Query 013741
Match_columns 437
No_of_seqs 297 out of 3161
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1.2E-84 2.6E-89 692.4 40.2 411 1-437 137-549 (613)
2 PLN03211 ABC transporter G-25; 100.0 9E-82 2E-86 676.6 45.8 409 3-437 175-596 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 9.5E-81 2.1E-85 667.7 46.7 412 2-437 133-552 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 5.4E-80 1.2E-84 708.0 45.3 415 4-437 178-612 (1394)
5 KOG0065 Pleiotropic drug resis 100.0 8.5E-80 1.8E-84 668.1 31.4 406 1-436 897-1314(1391)
6 PLN03140 ABC transporter G fam 100.0 2.9E-78 6.4E-83 691.9 45.6 406 3-437 988-1407(1470)
7 PLN03140 ABC transporter G fam 100.0 2.6E-78 5.7E-83 692.3 40.5 412 9-437 311-729 (1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 7.2E-76 1.6E-80 673.9 45.3 406 2-437 870-1296(1394)
9 KOG0065 Pleiotropic drug resis 100.0 1E-74 2.2E-79 628.6 33.1 418 3-437 228-651 (1391)
10 COG1126 GlnQ ABC-type polar am 99.9 2.3E-26 5E-31 208.7 14.3 116 1-122 108-223 (240)
11 COG1135 AbcC ABC-type metal io 99.9 3.9E-26 8.5E-31 217.2 13.1 116 1-122 113-229 (339)
12 COG4555 NatA ABC-type Na+ tran 99.9 9.6E-26 2.1E-30 202.1 12.1 118 1-124 105-222 (245)
13 COG1131 CcmA ABC-type multidru 99.9 1.6E-25 3.5E-30 219.4 14.7 118 4-127 111-229 (293)
14 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 4.9E-25 1.1E-29 207.8 13.5 111 7-124 117-227 (254)
15 COG1127 Ttg2A ABC-type transpo 99.9 7.3E-25 1.6E-29 201.9 13.8 119 1-124 116-235 (263)
16 COG1122 CbiO ABC-type cobalt t 99.9 5.8E-25 1.3E-29 207.6 12.9 118 1-124 110-228 (235)
17 COG1120 FepC ABC-type cobalami 99.9 1E-24 2.2E-29 206.6 13.0 113 5-123 114-227 (258)
18 COG1125 OpuBA ABC-type proline 99.9 5.1E-24 1.1E-28 197.4 13.9 119 2-124 106-225 (309)
19 PRK13537 nodulation ABC transp 99.9 1.1E-23 2.4E-28 207.9 15.2 116 3-124 112-227 (306)
20 COG3638 ABC-type phosphate/pho 99.9 8.4E-24 1.8E-28 194.4 11.7 114 5-124 123-237 (258)
21 TIGR01188 drrA daunorubicin re 99.9 2.5E-23 5.5E-28 205.2 15.3 115 4-124 99-213 (302)
22 TIGR02314 ABC_MetN D-methionin 99.9 2.2E-23 4.9E-28 208.1 15.1 115 3-123 114-229 (343)
23 PRK13643 cbiO cobalt transport 99.9 3.4E-23 7.4E-28 202.9 16.1 129 3-137 117-249 (288)
24 COG1137 YhbG ABC-type (unclass 99.9 1.9E-23 4E-28 187.3 12.0 114 5-124 115-228 (243)
25 COG0444 DppD ABC-type dipeptid 99.9 2.7E-23 5.9E-28 200.1 13.0 118 3-123 124-242 (316)
26 cd03261 ABC_Org_Solvent_Resist 99.9 4.7E-23 1E-27 196.0 14.5 113 4-122 111-224 (235)
27 PRK13536 nodulation factor exp 99.9 6.3E-23 1.4E-27 205.0 15.4 115 4-124 147-261 (340)
28 TIGR03258 PhnT 2-aminoethylpho 99.9 6.7E-23 1.4E-27 206.3 15.0 116 2-123 110-227 (362)
29 PRK13637 cbiO cobalt transport 99.9 1.4E-22 3.1E-27 198.4 16.9 115 3-123 116-233 (287)
30 PRK11650 ugpC glycerol-3-phosp 99.9 7.3E-23 1.6E-27 205.8 15.1 116 2-123 107-223 (356)
31 PRK13634 cbiO cobalt transport 99.9 1.6E-22 3.4E-27 198.5 16.9 115 3-123 118-234 (290)
32 TIGR01288 nodI ATP-binding ABC 99.9 1.1E-22 2.3E-27 200.9 15.2 115 4-124 110-224 (303)
33 PRK13647 cbiO cobalt transport 99.9 1.9E-22 4.1E-27 196.3 16.8 113 4-122 113-225 (274)
34 TIGR03265 PhnT2 putative 2-ami 99.9 9.9E-23 2.1E-27 204.6 14.9 116 2-123 107-223 (353)
35 COG1124 DppF ABC-type dipeptid 99.9 5.6E-23 1.2E-27 190.2 11.8 115 5-124 116-231 (252)
36 COG1123 ATPase components of v 99.9 8.8E-23 1.9E-27 209.9 14.5 118 3-124 126-244 (539)
37 cd03219 ABC_Mj1267_LivG_branch 99.9 1.4E-22 3E-27 192.8 14.4 112 5-122 119-230 (236)
38 PF01061 ABC2_membrane: ABC-2 99.9 1.5E-24 3.1E-29 200.7 0.6 208 225-437 1-210 (210)
39 PRK13651 cobalt transporter AT 99.9 3.5E-22 7.5E-27 197.1 17.3 115 3-123 138-253 (305)
40 COG1136 SalX ABC-type antimicr 99.9 1.2E-22 2.6E-27 188.9 13.1 102 5-112 117-219 (226)
41 PRK13636 cbiO cobalt transport 99.9 2.8E-22 6E-27 196.0 16.2 116 3-124 115-231 (283)
42 PRK11432 fbpC ferric transport 99.9 1.8E-22 3.9E-27 202.5 15.0 116 2-123 109-225 (351)
43 cd03218 ABC_YhbG The ABC trans 99.9 2.1E-22 4.5E-27 191.1 14.6 112 5-122 109-220 (232)
44 PRK10851 sulfate/thiosulfate t 99.9 2E-22 4.4E-27 202.4 15.3 115 3-123 110-225 (353)
45 cd03256 ABC_PhnC_transporter A 99.9 2.2E-22 4.8E-27 191.9 14.8 111 6-122 121-232 (241)
46 cd03259 ABC_Carb_Solutes_like 99.9 1.7E-22 3.7E-27 189.2 13.7 107 5-117 106-213 (213)
47 PRK13631 cbiO cobalt transport 99.9 4E-22 8.7E-27 197.8 17.0 126 3-134 149-278 (320)
48 cd03265 ABC_DrrA DrrA is the A 99.9 2.1E-22 4.5E-27 189.7 14.2 112 4-121 106-218 (220)
49 PRK13638 cbiO cobalt transport 99.9 3.9E-22 8.4E-27 193.8 16.5 114 4-123 111-224 (271)
50 PRK11153 metN DL-methionine tr 99.9 2.3E-22 5E-27 201.6 15.2 115 3-123 114-229 (343)
51 PRK13650 cbiO cobalt transport 99.9 4.3E-22 9.3E-27 194.3 16.5 114 3-123 114-228 (279)
52 PRK13641 cbiO cobalt transport 99.9 3E-22 6.6E-27 196.1 15.4 115 3-123 118-233 (287)
53 COG3840 ThiQ ABC-type thiamine 99.9 1.7E-22 3.6E-27 178.6 12.0 114 4-123 104-218 (231)
54 cd03296 ABC_CysA_sulfate_impor 99.9 2.6E-22 5.6E-27 191.4 14.3 112 5-122 112-224 (239)
55 PRK09536 btuD corrinoid ABC tr 99.9 2E-22 4.4E-27 204.9 14.4 112 5-122 115-226 (402)
56 PRK11264 putative amino-acid A 99.9 3.3E-22 7.1E-27 191.9 15.0 112 5-122 120-231 (250)
57 COG0411 LivG ABC-type branched 99.9 2E-22 4.4E-27 186.6 12.9 116 3-124 123-239 (250)
58 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.3E-22 7.1E-27 194.1 15.0 113 5-123 136-249 (269)
59 cd03260 ABC_PstB_phosphate_tra 99.9 2.6E-22 5.6E-27 189.9 13.8 111 6-121 116-226 (227)
60 PRK09473 oppD oligopeptide tra 99.9 3.6E-22 7.7E-27 199.0 15.5 118 3-123 132-250 (330)
61 PRK09493 glnQ glutamine ABC tr 99.9 3.6E-22 7.7E-27 190.5 14.8 114 4-123 111-224 (240)
62 PRK11000 maltose/maltodextrin 99.9 3E-22 6.5E-27 202.5 15.0 115 3-123 107-222 (369)
63 TIGR02315 ABC_phnC phosphonate 99.9 2.9E-22 6.3E-27 191.4 14.0 112 5-122 121-233 (243)
64 TIGR03522 GldA_ABC_ATP gliding 99.9 3.2E-22 6.8E-27 197.3 14.4 114 4-124 108-221 (301)
65 PRK15079 oligopeptide ABC tran 99.9 4E-22 8.7E-27 198.6 15.1 116 2-123 133-250 (331)
66 TIGR01186 proV glycine betaine 99.9 4.5E-22 9.8E-27 199.9 15.5 115 3-123 103-218 (363)
67 TIGR01184 ntrCD nitrate transp 99.9 2.7E-22 5.9E-27 190.3 13.0 110 5-120 90-200 (230)
68 cd03301 ABC_MalK_N The N-termi 99.9 3.5E-22 7.6E-27 187.1 13.7 108 4-117 105-213 (213)
69 PRK13639 cbiO cobalt transport 99.9 8.7E-22 1.9E-26 191.8 16.9 114 4-123 112-225 (275)
70 TIGR01187 potA spermidine/putr 99.9 5E-22 1.1E-26 197.8 15.3 114 4-123 75-189 (325)
71 PRK09452 potA putrescine/sperm 99.9 4.5E-22 9.8E-27 201.0 15.1 115 3-123 118-233 (375)
72 PRK13652 cbiO cobalt transport 99.9 5.3E-22 1.2E-26 193.4 15.1 114 4-123 112-226 (277)
73 PRK13646 cbiO cobalt transport 99.9 6E-22 1.3E-26 193.9 15.4 115 3-123 118-234 (286)
74 cd03258 ABC_MetN_methionine_tr 99.9 5.3E-22 1.1E-26 188.5 14.5 112 5-122 116-228 (233)
75 COG1118 CysA ABC-type sulfate/ 99.9 3E-22 6.6E-27 190.3 12.6 116 2-123 110-226 (345)
76 PRK11308 dppF dipeptide transp 99.9 5.7E-22 1.2E-26 197.3 15.3 115 3-123 127-243 (327)
77 PRK15093 antimicrobial peptide 99.9 5.4E-22 1.2E-26 198.0 15.1 116 5-123 131-247 (330)
78 PRK11022 dppD dipeptide transp 99.9 6.1E-22 1.3E-26 197.1 15.3 118 3-123 124-242 (326)
79 cd03266 ABC_NatA_sodium_export 99.9 4.4E-22 9.5E-27 187.1 13.5 108 4-117 111-218 (218)
80 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.8E-22 1.3E-26 186.6 14.3 110 5-120 107-219 (220)
81 TIGR00960 3a0501s02 Type II (G 99.9 4.4E-22 9.6E-27 186.8 13.2 104 4-113 113-216 (216)
82 PRK13644 cbiO cobalt transport 99.9 6.8E-22 1.5E-26 192.4 14.9 114 3-123 110-223 (274)
83 TIGR01978 sufC FeS assembly AT 99.9 6.9E-22 1.5E-26 188.8 14.5 113 6-123 119-233 (243)
84 PRK13649 cbiO cobalt transport 99.9 1.3E-21 2.8E-26 191.0 16.7 114 4-123 119-233 (280)
85 PRK11831 putative ABC transpor 99.9 6.9E-22 1.5E-26 191.8 14.6 111 6-122 120-231 (269)
86 COG1117 PstB ABC-type phosphat 99.9 2.1E-22 4.5E-27 182.4 10.0 129 4-143 120-248 (253)
87 PRK13633 cobalt transporter AT 99.9 9.3E-22 2E-26 192.0 15.5 114 3-123 118-232 (280)
88 COG1116 TauB ABC-type nitrate/ 99.9 4.3E-22 9.2E-27 185.7 12.3 104 2-111 103-207 (248)
89 PRK11607 potG putrescine trans 99.9 7.2E-22 1.6E-26 199.8 15.1 115 3-123 123-238 (377)
90 PRK11300 livG leucine/isoleuci 99.9 6.8E-22 1.5E-26 190.3 14.1 110 7-122 131-241 (255)
91 cd03295 ABC_OpuCA_Osmoprotecti 99.9 8.4E-22 1.8E-26 188.2 14.6 113 4-122 108-223 (242)
92 cd03263 ABC_subfamily_A The AB 99.9 6.9E-22 1.5E-26 186.0 13.7 111 5-122 109-219 (220)
93 TIGR02770 nickel_nikD nickel i 99.9 8.6E-22 1.9E-26 186.8 14.3 112 6-123 99-214 (230)
94 PRK10619 histidine/lysine/argi 99.9 1.1E-21 2.4E-26 189.1 15.3 113 4-122 126-239 (257)
95 TIGR00972 3a0107s01c2 phosphat 99.9 1.1E-21 2.4E-26 188.0 15.1 112 4-122 115-230 (247)
96 PRK10895 lipopolysaccharide AB 99.9 8.7E-22 1.9E-26 188.0 14.3 113 4-122 112-224 (241)
97 PRK10771 thiQ thiamine transpo 99.9 1E-21 2.2E-26 186.5 14.6 112 6-123 106-218 (232)
98 cd03269 ABC_putative_ATPase Th 99.9 7.4E-22 1.6E-26 184.5 13.4 108 4-117 103-210 (210)
99 PRK13635 cbiO cobalt transport 99.9 1.8E-21 4E-26 189.8 16.6 114 3-123 114-228 (279)
100 PRK13648 cbiO cobalt transport 99.9 2E-21 4.3E-26 188.6 16.7 113 4-123 117-230 (269)
101 PRK11614 livF leucine/isoleuci 99.9 7.7E-22 1.7E-26 187.9 13.3 112 6-123 113-225 (237)
102 TIGR02142 modC_ABC molybdenum 99.9 9.7E-22 2.1E-26 198.0 14.6 113 5-123 107-220 (354)
103 TIGR03771 anch_rpt_ABC anchore 99.9 1.1E-21 2.3E-26 185.4 13.8 110 6-122 90-199 (223)
104 PRK11231 fecE iron-dicitrate t 99.9 1.1E-21 2.4E-26 188.9 14.2 111 6-122 115-225 (255)
105 TIGR03415 ABC_choXWV_ATP choli 99.9 1.2E-21 2.6E-26 197.8 15.1 115 3-123 138-253 (382)
106 cd03226 ABC_cobalt_CbiO_domain 99.9 8.6E-22 1.9E-26 183.4 13.0 101 8-114 105-205 (205)
107 PRK11124 artP arginine transpo 99.9 1.5E-21 3.3E-26 186.4 14.8 112 5-122 117-228 (242)
108 COG3839 MalK ABC-type sugar tr 99.9 6.6E-22 1.4E-26 194.4 12.4 117 2-124 106-223 (338)
109 COG2884 FtsE Predicted ATPase 99.9 1.2E-21 2.6E-26 174.4 12.8 111 2-118 110-220 (223)
110 PRK10070 glycine betaine trans 99.9 1.4E-21 3E-26 198.6 15.2 115 3-123 138-253 (400)
111 cd03268 ABC_BcrA_bacitracin_re 99.9 8.8E-22 1.9E-26 183.7 12.5 105 7-117 104-208 (208)
112 COG4175 ProV ABC-type proline/ 99.9 1.5E-21 3.3E-26 185.9 14.2 118 1-124 136-254 (386)
113 cd03297 ABC_ModC_molybdenum_tr 99.9 1.3E-21 2.8E-26 183.5 13.6 106 6-117 108-214 (214)
114 TIGR03411 urea_trans_UrtD urea 99.9 1.5E-21 3.2E-26 186.5 14.3 110 6-122 120-229 (242)
115 cd03224 ABC_TM1139_LivF_branch 99.9 1E-21 2.3E-26 185.0 13.1 111 6-122 108-219 (222)
116 PRK13645 cbiO cobalt transport 99.9 1.7E-21 3.7E-26 191.0 15.0 113 5-123 125-239 (289)
117 TIGR02769 nickel_nikE nickel i 99.9 1.6E-21 3.5E-26 188.8 14.6 113 5-123 125-239 (265)
118 cd03235 ABC_Metallic_Cations A 99.9 1.2E-21 2.7E-26 183.4 13.3 106 5-117 108-213 (213)
119 PRK09984 phosphonate/organopho 99.9 1.5E-21 3.2E-26 188.8 14.1 111 5-121 128-239 (262)
120 PRK11144 modC molybdate transp 99.9 1.4E-21 3.1E-26 196.5 14.5 111 7-123 106-217 (352)
121 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.2E-21 4.8E-26 184.6 15.1 112 5-123 108-220 (236)
122 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.7E-21 3.8E-26 184.0 14.1 108 4-117 117-224 (224)
123 PRK13640 cbiO cobalt transport 99.9 3.7E-21 8E-26 188.0 16.7 114 3-123 117-231 (282)
124 TIGR03873 F420-0_ABC_ATP propo 99.9 1.9E-21 4.2E-26 187.3 14.4 111 6-122 114-224 (256)
125 TIGR03005 ectoine_ehuA ectoine 99.9 2.4E-21 5.2E-26 186.2 14.8 112 5-122 122-234 (252)
126 cd03234 ABCG_White The White s 99.9 2.2E-21 4.8E-26 183.4 14.3 105 8-117 121-226 (226)
127 cd03264 ABC_drug_resistance_li 99.9 1.6E-21 3.4E-26 182.4 13.2 107 4-117 105-211 (211)
128 PRK13548 hmuV hemin importer A 99.9 2.1E-21 4.5E-26 187.4 14.4 112 6-123 111-229 (258)
129 PRK10253 iron-enterobactin tra 99.9 2.2E-21 4.7E-26 187.9 14.5 112 6-123 120-232 (265)
130 PRK14268 phosphate ABC transpo 99.9 2.6E-21 5.6E-26 186.7 14.9 111 5-122 126-240 (258)
131 PRK14245 phosphate ABC transpo 99.9 2.5E-21 5.3E-26 185.9 14.6 115 6-123 119-233 (250)
132 cd03299 ABC_ModC_like Archeal 99.9 3E-21 6.4E-26 183.7 14.9 114 4-123 104-218 (235)
133 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.8E-21 3.9E-26 182.0 13.2 106 6-117 105-211 (211)
134 PRK10575 iron-hydroxamate tran 99.9 2.3E-21 5.1E-26 187.7 14.3 111 6-122 124-235 (265)
135 TIGR03740 galliderm_ABC gallid 99.9 1.9E-21 4.1E-26 183.5 13.1 107 8-120 103-209 (223)
136 COG4598 HisP ABC-type histidin 99.9 2.2E-21 4.9E-26 171.1 12.6 116 1-122 124-239 (256)
137 cd03225 ABC_cobalt_CbiO_domain 99.9 2.3E-21 5E-26 181.3 13.2 102 5-112 110-211 (211)
138 cd03267 ABC_NatA_like Similar 99.9 2.7E-21 5.8E-26 184.2 13.8 108 4-117 128-236 (236)
139 cd03292 ABC_FtsE_transporter F 99.9 2.2E-21 4.8E-26 181.7 13.1 104 4-113 111-214 (214)
140 PRK14273 phosphate ABC transpo 99.9 3.6E-21 7.8E-26 185.2 14.8 112 5-123 122-237 (254)
141 PRK15112 antimicrobial peptide 99.9 3.2E-21 7E-26 186.9 14.5 113 5-123 124-238 (267)
142 TIGR02673 FtsE cell division A 99.9 2.5E-21 5.5E-26 181.4 13.1 102 5-112 113-214 (214)
143 PRK03695 vitamin B12-transport 99.9 4.1E-21 8.9E-26 184.2 14.7 112 5-122 102-220 (248)
144 PRK11701 phnK phosphonate C-P 99.9 4.2E-21 9E-26 185.2 14.8 112 5-122 126-239 (258)
145 PRK11629 lolD lipoprotein tran 99.9 4.9E-21 1.1E-25 181.9 14.6 109 4-119 120-229 (233)
146 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.6E-21 5.6E-26 181.9 12.5 102 5-113 116-218 (218)
147 CHL00131 ycf16 sulfate ABC tra 99.9 6.4E-21 1.4E-25 183.2 15.3 111 7-122 127-239 (252)
148 PRK14247 phosphate ABC transpo 99.9 5.2E-21 1.1E-25 183.6 14.7 117 4-123 117-233 (250)
149 PRK09700 D-allose transporter 99.9 3.6E-21 7.7E-26 203.2 14.6 112 5-122 121-232 (510)
150 PRK13632 cbiO cobalt transport 99.9 5.6E-21 1.2E-25 185.7 14.8 113 4-123 117-230 (271)
151 PRK13642 cbiO cobalt transport 99.9 1E-20 2.2E-25 184.5 16.6 113 4-123 115-228 (277)
152 TIGR02323 CP_lyasePhnK phospho 99.9 5.6E-21 1.2E-25 183.7 14.6 112 6-123 124-237 (253)
153 TIGR01277 thiQ thiamine ABC tr 99.9 4.9E-21 1.1E-25 179.5 13.6 106 7-118 106-212 (213)
154 cd03300 ABC_PotA_N PotA is an 99.9 7.1E-21 1.5E-25 180.7 14.8 112 5-122 106-218 (232)
155 PRK15056 manganese/iron transp 99.9 5.4E-21 1.2E-25 185.9 14.3 110 6-122 119-228 (272)
156 PRK14242 phosphate transporter 99.9 6E-21 1.3E-25 183.5 14.5 115 5-122 121-235 (253)
157 cd03262 ABC_HisP_GlnQ_permease 99.9 4.7E-21 1E-25 179.4 13.2 103 5-113 111-213 (213)
158 PRK09580 sufC cysteine desulfu 99.9 1.1E-20 2.4E-25 181.0 16.1 119 7-131 121-241 (248)
159 PRK13545 tagH teichoic acids e 99.9 7.9E-21 1.7E-25 196.2 16.0 116 4-125 118-233 (549)
160 PRK10418 nikD nickel transport 99.9 7E-21 1.5E-25 183.3 14.6 110 8-123 116-229 (254)
161 PRK11248 tauB taurine transpor 99.9 6.3E-21 1.4E-25 183.7 14.2 111 4-120 103-216 (255)
162 TIGR00968 3a0106s01 sulfate AB 99.9 7.3E-21 1.6E-25 181.3 14.5 113 5-123 106-219 (237)
163 PRK15134 microcin C ABC transp 99.9 5.7E-21 1.2E-25 202.5 15.0 114 3-122 127-244 (529)
164 PRK10908 cell division protein 99.9 6.7E-21 1.4E-25 179.6 13.9 105 4-114 112-216 (222)
165 PRK11247 ssuB aliphatic sulfon 99.9 6E-21 1.3E-25 183.9 13.8 108 7-120 111-219 (257)
166 PRK10744 pstB phosphate transp 99.9 8.3E-21 1.8E-25 183.4 14.8 117 4-123 127-243 (260)
167 cd03257 ABC_NikE_OppD_transpor 99.9 6.4E-21 1.4E-25 180.3 13.6 101 11-117 126-228 (228)
168 PRK14244 phosphate ABC transpo 99.9 8.6E-21 1.9E-25 182.3 14.6 115 5-122 121-235 (251)
169 PRK14267 phosphate ABC transpo 99.9 8.8E-21 1.9E-25 182.4 14.6 116 5-123 121-236 (253)
170 TIGR03269 met_CoM_red_A2 methy 99.8 8.7E-21 1.9E-25 200.7 15.8 117 4-126 143-260 (520)
171 PRK14258 phosphate ABC transpo 99.8 1.1E-20 2.4E-25 182.6 15.0 117 5-123 122-244 (261)
172 PRK10938 putative molybdenum t 99.8 6.3E-21 1.4E-25 200.3 14.3 110 7-122 113-222 (490)
173 TIGR02211 LolD_lipo_ex lipopro 99.8 8E-21 1.7E-25 178.9 13.6 103 5-114 117-220 (221)
174 PRK14250 phosphate ABC transpo 99.8 9.6E-21 2.1E-25 180.9 14.2 110 7-122 108-219 (241)
175 PRK10762 D-ribose transporter 99.8 6.8E-21 1.5E-25 200.6 14.4 112 5-122 117-228 (501)
176 PRK10419 nikE nickel transport 99.8 1E-20 2.3E-25 183.5 14.6 113 5-123 126-240 (268)
177 PRK13549 xylose transporter AT 99.8 6.5E-21 1.4E-25 201.0 14.2 112 5-122 119-230 (506)
178 PRK13547 hmuV hemin importer A 99.8 1E-20 2.2E-25 183.9 14.4 111 6-122 122-242 (272)
179 PRK14274 phosphate ABC transpo 99.8 1.2E-20 2.6E-25 182.2 14.7 116 4-122 126-241 (259)
180 PRK13549 xylose transporter AT 99.8 7.9E-21 1.7E-25 200.4 14.3 112 5-122 380-492 (506)
181 PRK14235 phosphate transporter 99.8 1.4E-20 3E-25 182.5 14.8 115 5-122 135-249 (267)
182 PRK14269 phosphate ABC transpo 99.8 1.4E-20 3.1E-25 180.2 14.6 115 6-123 115-229 (246)
183 COG4172 ABC-type uncharacteriz 99.8 7.6E-21 1.6E-25 186.1 12.7 118 1-123 397-515 (534)
184 PRK14270 phosphate ABC transpo 99.8 1.5E-20 3.3E-25 180.6 14.8 112 5-123 119-234 (251)
185 PRK15439 autoinducer 2 ABC tra 99.8 9E-21 2E-25 200.0 14.4 111 6-122 117-227 (510)
186 PRK13546 teichoic acids export 99.8 2.6E-20 5.6E-25 180.2 16.2 115 4-124 118-232 (264)
187 COG4152 ABC-type uncharacteriz 99.8 7.9E-21 1.7E-25 175.2 11.8 121 1-127 102-222 (300)
188 PRK10584 putative ABC transpor 99.8 1.4E-20 3E-25 178.2 13.8 105 4-115 121-226 (228)
189 COG3842 PotA ABC-type spermidi 99.8 4.4E-21 9.5E-26 189.5 10.7 114 3-122 110-224 (352)
190 PRK10261 glutathione transport 99.8 1.2E-20 2.5E-25 203.4 14.9 114 4-123 437-552 (623)
191 COG1123 ATPase components of v 99.8 9.6E-21 2.1E-25 194.9 13.5 116 3-123 402-518 (539)
192 PRK14237 phosphate transporter 99.8 2E-20 4.4E-25 181.4 15.0 115 5-122 135-249 (267)
193 PRK14239 phosphate transporter 99.8 2E-20 4.3E-25 179.8 14.7 114 6-122 121-234 (252)
194 PRK14241 phosphate transporter 99.8 2E-20 4.3E-25 180.5 14.6 113 4-123 119-241 (258)
195 PRK14256 phosphate ABC transpo 99.8 2.2E-20 4.8E-25 179.5 14.8 115 5-122 120-234 (252)
196 PRK15134 microcin C ABC transp 99.8 1.3E-20 2.9E-25 199.6 14.6 114 4-123 399-514 (529)
197 PRK10982 galactose/methyl gala 99.8 1.5E-20 3.2E-25 197.6 14.7 112 5-122 110-221 (491)
198 TIGR03410 urea_trans_UrtE urea 99.8 1.2E-20 2.6E-25 178.8 12.7 109 8-122 109-219 (230)
199 PRK14248 phosphate ABC transpo 99.8 2.2E-20 4.8E-25 181.2 14.6 113 7-122 138-250 (268)
200 PRK10762 D-ribose transporter 99.8 1.3E-20 2.8E-25 198.5 14.0 112 5-122 370-482 (501)
201 COG4161 ArtP ABC-type arginine 99.8 1.8E-20 3.9E-25 162.6 12.2 114 1-120 113-226 (242)
202 PRK14262 phosphate ABC transpo 99.8 2.5E-20 5.4E-25 178.9 14.5 115 6-123 119-233 (250)
203 PRK11288 araG L-arabinose tran 99.8 1.4E-20 3E-25 198.2 14.0 110 7-122 373-483 (501)
204 PRK14240 phosphate transporter 99.8 3.1E-20 6.7E-25 178.3 14.9 115 5-122 118-232 (250)
205 PRK14253 phosphate ABC transpo 99.8 2.9E-20 6.2E-25 178.4 14.6 114 6-122 118-231 (249)
206 TIGR01257 rim_protein retinal- 99.8 1.9E-20 4.1E-25 218.4 15.8 119 3-127 2044-2162(2272)
207 PRK15439 autoinducer 2 ABC tra 99.8 1.5E-20 3.2E-25 198.4 13.5 109 7-121 380-489 (510)
208 TIGR03269 met_CoM_red_A2 methy 99.8 2.5E-20 5.4E-25 197.2 15.2 112 6-123 399-516 (520)
209 PRK09700 D-allose transporter 99.8 1.9E-20 4.2E-25 197.6 14.3 107 7-119 386-493 (510)
210 cd03214 ABC_Iron-Siderophores_ 99.8 1.9E-20 4.1E-25 170.9 12.4 102 10-117 78-180 (180)
211 PRK10261 glutathione transport 99.8 1.6E-20 3.5E-25 202.4 13.9 114 3-122 139-256 (623)
212 PRK14272 phosphate ABC transpo 99.8 3.9E-20 8.4E-25 177.7 14.8 111 6-123 121-235 (252)
213 PRK14275 phosphate ABC transpo 99.8 3.5E-20 7.5E-25 181.5 14.5 111 6-123 155-269 (286)
214 PRK14236 phosphate transporter 99.8 3.8E-20 8.3E-25 179.9 14.7 114 6-122 141-254 (272)
215 PRK14263 phosphate ABC transpo 99.8 4.3E-20 9.3E-25 178.5 14.6 115 6-123 122-244 (261)
216 PRK14260 phosphate ABC transpo 99.8 4.1E-20 8.8E-25 178.4 14.5 115 5-122 122-241 (259)
217 PRK14271 phosphate ABC transpo 99.8 4.7E-20 1E-24 179.7 14.9 117 4-123 134-250 (276)
218 PRK14257 phosphate ABC transpo 99.8 4E-20 8.6E-25 184.2 14.7 113 8-123 200-312 (329)
219 TIGR02633 xylG D-xylose ABC tr 99.8 2.7E-20 5.8E-25 196.1 14.2 111 5-121 116-227 (500)
220 cd03252 ABCC_Hemolysin The ABC 99.8 3.5E-20 7.6E-25 176.4 13.3 90 31-123 135-224 (237)
221 PRK09544 znuC high-affinity zi 99.8 3.8E-20 8.2E-25 177.8 13.5 108 8-122 99-207 (251)
222 PRK14249 phosphate ABC transpo 99.8 5.5E-20 1.2E-24 176.6 14.6 113 7-122 121-233 (251)
223 PRK14266 phosphate ABC transpo 99.8 5.6E-20 1.2E-24 176.5 14.5 115 6-123 119-233 (250)
224 PRK14251 phosphate ABC transpo 99.8 5.2E-20 1.1E-24 176.8 14.4 113 7-122 121-233 (251)
225 PRK14259 phosphate ABC transpo 99.8 5.2E-20 1.1E-24 178.7 14.3 114 7-123 128-252 (269)
226 cd03245 ABCC_bacteriocin_expor 99.8 3.3E-20 7.2E-25 174.5 12.3 107 8-117 108-220 (220)
227 PRK14261 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 176.7 14.2 114 6-122 122-235 (253)
228 PRK14246 phosphate ABC transpo 99.8 7.6E-20 1.6E-24 176.4 14.8 117 4-123 124-240 (257)
229 PRK14255 phosphate ABC transpo 99.8 8.2E-20 1.8E-24 175.5 14.8 114 7-123 122-235 (252)
230 TIGR02633 xylG D-xylose ABC tr 99.8 5.5E-20 1.2E-24 193.7 14.4 109 6-120 379-488 (500)
231 COG4586 ABC-type uncharacteriz 99.8 5.6E-20 1.2E-24 172.1 12.6 121 1-127 128-249 (325)
232 PRK14238 phosphate transporter 99.8 7.7E-20 1.7E-24 177.7 14.1 113 7-122 141-253 (271)
233 PRK11288 araG L-arabinose tran 99.8 6.5E-20 1.4E-24 193.1 14.6 109 5-119 116-224 (501)
234 PRK14265 phosphate ABC transpo 99.8 9.5E-20 2.1E-24 177.3 14.6 114 7-123 135-257 (274)
235 cd03217 ABC_FeS_Assembly ABC-t 99.8 6E-20 1.3E-24 170.5 12.6 94 33-128 103-197 (200)
236 TIGR02982 heterocyst_DevA ABC 99.8 7.4E-20 1.6E-24 172.3 13.0 103 4-113 116-219 (220)
237 PRK14243 phosphate transporter 99.8 1.1E-19 2.4E-24 175.9 14.3 114 7-123 125-247 (264)
238 TIGR01257 rim_protein retinal- 99.8 7.4E-20 1.6E-24 213.5 15.4 116 4-126 1036-1151(2272)
239 COG4608 AppF ABC-type oligopep 99.8 6.9E-20 1.5E-24 173.1 12.4 116 3-123 82-198 (268)
240 PRK14264 phosphate ABC transpo 99.8 1.2E-19 2.5E-24 179.3 14.4 113 7-122 174-287 (305)
241 PRK14254 phosphate ABC transpo 99.8 1.2E-19 2.7E-24 177.5 14.1 110 6-122 153-267 (285)
242 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.2E-19 2.7E-24 172.8 13.5 91 31-124 136-226 (238)
243 cd03254 ABCC_Glucan_exporter_l 99.8 1.1E-19 2.4E-24 172.1 12.9 112 9-123 108-225 (229)
244 cd03251 ABCC_MsbA MsbA is an e 99.8 1.2E-19 2.5E-24 172.5 13.0 90 31-123 135-224 (234)
245 PRK11174 cysteine/glutathione 99.8 1E-19 2.2E-24 195.4 14.1 113 8-124 453-572 (588)
246 cd03270 ABC_UvrA_I The excisio 99.8 1.9E-19 4E-24 170.4 14.0 100 11-117 118-226 (226)
247 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.4E-19 3.1E-24 175.8 13.4 114 8-124 106-225 (275)
248 PRK10982 galactose/methyl gala 99.8 1.2E-19 2.6E-24 190.7 13.7 109 6-120 367-476 (491)
249 cd03232 ABC_PDR_domain2 The pl 99.8 1.1E-19 2.4E-24 167.6 11.7 84 34-117 108-192 (192)
250 TIGR03608 L_ocin_972_ABC putat 99.8 1.7E-19 3.8E-24 167.9 12.7 98 4-108 109-206 (206)
251 cd03213 ABCG_EPDR ABCG transpo 99.8 1.5E-19 3.2E-24 167.1 12.1 84 34-117 111-194 (194)
252 COG4148 ModC ABC-type molybdat 99.8 7.5E-20 1.6E-24 171.7 9.9 112 7-124 106-218 (352)
253 cd03237 ABC_RNaseL_inhibitor_d 99.8 2.8E-19 6.1E-24 171.2 14.0 107 9-121 95-204 (246)
254 PRK14252 phosphate ABC transpo 99.8 3.3E-19 7.2E-24 172.7 14.5 113 7-122 135-247 (265)
255 PRK11176 lipid transporter ATP 99.8 2.1E-19 4.6E-24 192.7 14.5 113 7-123 447-566 (582)
256 COG1119 ModF ABC-type molybden 99.8 1.5E-19 3.3E-24 167.5 11.3 109 4-118 146-256 (257)
257 COG4559 ABC-type hemin transpo 99.8 2.6E-19 5.6E-24 162.2 12.4 113 5-123 111-229 (259)
258 cd03233 ABC_PDR_domain1 The pl 99.8 2.1E-19 4.6E-24 167.1 12.0 89 29-117 113-202 (202)
259 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 2.3E-19 5E-24 195.9 14.3 111 7-123 555-672 (686)
260 PRK15177 Vi polysaccharide exp 99.8 3.7E-19 8.1E-24 166.8 13.5 110 12-128 87-196 (213)
261 COG4172 ABC-type uncharacteriz 99.8 2.2E-19 4.9E-24 175.9 12.3 120 1-123 126-246 (534)
262 COG4987 CydC ABC-type transpor 99.8 2.1E-19 4.5E-24 182.1 12.4 114 7-124 441-561 (573)
263 PRK10790 putative multidrug tr 99.8 3.2E-19 6.9E-24 191.7 14.6 113 7-123 443-562 (592)
264 PRK10535 macrolide transporter 99.8 1.5E-18 3.3E-23 187.8 19.7 112 4-122 119-230 (648)
265 TIGR01842 type_I_sec_PrtD type 99.8 3.3E-19 7.1E-24 189.7 14.2 98 23-123 444-541 (544)
266 PRK11160 cysteine/glutathione 99.8 3.5E-19 7.7E-24 190.5 14.4 114 7-124 443-562 (574)
267 cd03253 ABCC_ATM1_transporter 99.8 4.9E-19 1.1E-23 168.4 13.0 90 31-123 134-223 (236)
268 cd03271 ABC_UvrA_II The excisi 99.8 6.5E-19 1.4E-23 169.3 13.9 105 8-119 147-261 (261)
269 COG1132 MdlB ABC-type multidru 99.8 4.3E-19 9.4E-24 189.7 14.0 101 20-124 452-552 (567)
270 cd03216 ABC_Carb_Monos_I This 99.8 4.4E-19 9.5E-24 159.4 11.6 80 35-115 83-162 (163)
271 cd03236 ABC_RNaseL_inhibitor_d 99.8 5E-19 1.1E-23 170.3 12.7 106 5-117 115-220 (255)
272 cd03288 ABCC_SUR2 The SUR doma 99.8 7.1E-19 1.5E-23 169.6 13.7 90 31-123 153-242 (257)
273 cd03238 ABC_UvrA The excision 99.8 7.7E-19 1.7E-23 159.4 13.1 98 11-115 68-168 (176)
274 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 5.1E-19 1.1E-23 193.9 14.3 112 7-124 582-700 (710)
275 TIGR03375 type_I_sec_LssB type 99.8 5.7E-19 1.2E-23 193.1 14.3 114 7-124 568-688 (694)
276 COG0396 sufC Cysteine desulfur 99.8 1.3E-18 2.8E-23 159.7 14.1 122 5-133 118-242 (251)
277 TIGR02203 MsbA_lipidA lipid A 99.8 5.9E-19 1.3E-23 188.8 14.0 113 7-123 436-555 (571)
278 cd03244 ABCC_MRP_domain2 Domai 99.8 6.9E-19 1.5E-23 165.7 12.5 107 8-118 107-220 (221)
279 COG4988 CydD ABC-type transpor 99.8 6.1E-19 1.3E-23 181.1 13.0 113 7-123 424-542 (559)
280 COG4604 CeuD ABC-type enteroch 99.8 2.7E-19 5.8E-24 160.3 9.0 115 4-124 110-225 (252)
281 COG4181 Predicted ABC-type tra 99.8 5.6E-19 1.2E-23 154.9 10.5 105 4-115 121-226 (228)
282 TIGR01193 bacteriocin_ABC ABC- 99.8 8.3E-19 1.8E-23 192.2 14.3 112 8-124 579-697 (708)
283 COG2274 SunT ABC-type bacterio 99.8 3.8E-19 8.2E-24 191.6 11.2 101 20-124 596-696 (709)
284 TIGR01846 type_I_sec_HlyB type 99.8 1E-18 2.2E-23 191.0 14.6 113 8-124 561-680 (694)
285 COG0410 LivF ABC-type branched 99.8 9.6E-19 2.1E-23 161.0 12.1 109 10-124 116-226 (237)
286 PRK10938 putative molybdenum t 99.8 6.9E-19 1.5E-23 185.0 12.5 106 7-118 378-486 (490)
287 PRK13657 cyclic beta-1,2-gluca 99.8 9.7E-19 2.1E-23 187.8 13.8 113 7-123 438-557 (588)
288 cd03231 ABC_CcmA_heme_exporter 99.8 9.1E-19 2E-23 162.7 11.8 96 7-108 103-198 (201)
289 KOG0055 Multidrug/pheromone ex 99.8 7.2E-19 1.6E-23 193.5 12.8 103 18-124 474-576 (1228)
290 TIGR01166 cbiO cobalt transpor 99.8 9.7E-19 2.1E-23 160.9 11.4 87 4-95 102-188 (190)
291 cd03215 ABC_Carb_Monos_II This 99.8 6.4E-19 1.4E-23 161.1 10.0 78 35-113 105-182 (182)
292 cd03230 ABC_DR_subfamily_A Thi 99.8 7.9E-19 1.7E-23 159.2 10.4 78 35-113 96-173 (173)
293 TIGR01192 chvA glucan exporter 99.8 1.6E-18 3.4E-23 185.9 14.5 98 23-124 461-558 (585)
294 PRK10789 putative multidrug tr 99.8 1.6E-18 3.5E-23 185.3 14.6 112 8-123 419-537 (569)
295 PRK13543 cytochrome c biogenes 99.8 1.4E-18 2.9E-23 163.1 12.2 98 7-110 115-212 (214)
296 TIGR02324 CP_lyasePhnL phospho 99.8 1.5E-18 3.3E-23 163.7 12.6 99 5-109 124-223 (224)
297 PRK13538 cytochrome c biogenes 99.8 1.1E-18 2.4E-23 162.5 11.4 96 7-108 107-202 (204)
298 cd03248 ABCC_TAP TAP, the Tran 99.8 1E-18 2.2E-23 165.1 11.3 96 10-113 129-226 (226)
299 PRK10247 putative ABC transpor 99.8 1.2E-18 2.6E-23 164.7 11.6 105 7-118 114-221 (225)
300 KOG0059 Lipid exporter ABCA1 a 99.8 9.7E-19 2.1E-23 194.7 12.6 120 2-127 671-790 (885)
301 cd03246 ABCC_Protease_Secretio 99.8 1E-18 2.2E-23 158.5 10.3 77 35-113 97-173 (173)
302 TIGR00958 3a01208 Conjugate Tr 99.8 1.6E-18 3.5E-23 189.7 13.8 112 7-124 584-702 (711)
303 cd03247 ABCC_cytochrome_bd The 99.8 2E-18 4.2E-23 157.3 11.1 83 32-117 96-178 (178)
304 PRK15064 ABC transporter ATP-b 99.8 2.7E-18 5.8E-23 182.1 13.8 108 7-123 132-241 (530)
305 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.4E-18 5.2E-23 160.5 11.4 86 31-119 122-207 (207)
306 TIGR02204 MsbA_rel ABC transpo 99.8 3.9E-18 8.4E-23 182.7 14.5 113 7-123 443-562 (576)
307 PRK15064 ABC transporter ATP-b 99.8 2.7E-18 5.8E-23 182.2 13.0 108 7-123 415-524 (530)
308 cd03229 ABC_Class3 This class 99.8 2.3E-18 5E-23 156.9 10.5 77 35-112 101-178 (178)
309 COG4525 TauB ABC-type taurine 99.8 5.9E-18 1.3E-22 151.5 12.1 119 1-125 104-225 (259)
310 KOG0057 Mitochondrial Fe/S clu 99.8 4.6E-18 1E-22 172.6 12.8 113 8-124 455-574 (591)
311 PRK13409 putative ATPase RIL; 99.8 3.7E-18 8.1E-23 182.2 12.7 104 9-119 433-537 (590)
312 cd03222 ABC_RNaseL_inhibitor T 99.8 4.8E-18 1E-22 154.4 10.8 85 35-120 72-159 (177)
313 TIGR01189 ccmA heme ABC export 99.8 4.6E-18 9.9E-23 157.5 10.9 92 8-107 106-197 (198)
314 PRK11819 putative ABC transpor 99.8 5.9E-18 1.3E-22 180.4 13.2 105 7-121 142-247 (556)
315 KOG0058 Peptide exporter, ABC 99.8 4.6E-18 1E-22 178.0 12.0 103 18-124 589-691 (716)
316 PRK13539 cytochrome c biogenes 99.7 6.7E-18 1.4E-22 157.6 11.4 95 8-110 106-200 (207)
317 cd03291 ABCC_CFTR1 The CFTR su 99.7 1.5E-17 3.2E-22 162.4 14.3 90 31-123 156-246 (282)
318 PTZ00265 multidrug resistance 99.7 6.9E-18 1.5E-22 195.8 13.7 113 8-123 1326-1451(1466)
319 PRK10636 putative ABC transpor 99.7 8.8E-18 1.9E-22 181.5 13.6 108 7-123 407-516 (638)
320 PRK10636 putative ABC transpor 99.7 9.9E-18 2.1E-22 181.1 13.5 106 6-120 125-232 (638)
321 cd03290 ABCC_SUR1_N The SUR do 99.7 1.2E-17 2.6E-22 157.0 12.1 101 9-112 109-218 (218)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.2E-17 2.7E-22 177.9 13.4 105 8-122 141-246 (552)
323 cd03250 ABCC_MRP_domain1 Domai 99.7 1.3E-17 2.7E-22 155.3 11.8 80 31-112 124-204 (204)
324 KOG0055 Multidrug/pheromone ex 99.7 6.3E-18 1.4E-22 186.1 11.2 104 17-124 1110-1213(1228)
325 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.8E-17 3.8E-22 176.8 14.3 109 6-116 441-551 (555)
326 PRK10522 multidrug transporter 99.7 2E-17 4.3E-22 176.1 14.6 106 7-116 422-530 (547)
327 COG1129 MglA ABC-type sugar tr 99.7 2.2E-17 4.7E-22 169.1 14.1 112 2-119 118-229 (500)
328 PRK13409 putative ATPase RIL; 99.7 1.2E-17 2.6E-22 178.4 12.6 98 7-111 190-287 (590)
329 PRK00349 uvrA excinuclease ABC 99.7 1.6E-17 3.5E-22 183.6 13.5 111 5-123 465-584 (943)
330 cd03228 ABCC_MRP_Like The MRP 99.7 1E-17 2.2E-22 151.6 9.9 75 35-112 97-171 (171)
331 PRK11147 ABC transporter ATPas 99.7 2.3E-17 5E-22 178.4 13.7 104 7-121 136-240 (635)
332 COG4618 ArpD ABC-type protease 99.7 1.1E-17 2.5E-22 168.3 10.2 107 17-126 456-562 (580)
333 PLN03073 ABC transporter F fam 99.7 3.4E-17 7.3E-22 178.1 14.0 109 7-124 604-714 (718)
334 PTZ00265 multidrug resistance 99.7 2.6E-17 5.5E-22 191.1 13.9 101 8-111 547-655 (1466)
335 PLN03232 ABC transporter C fam 99.7 3.5E-17 7.6E-22 191.2 14.5 113 8-124 1339-1458(1495)
336 PLN03073 ABC transporter F fam 99.7 5.4E-17 1.2E-21 176.5 14.3 106 7-121 321-428 (718)
337 TIGR00630 uvra excinuclease AB 99.7 4.7E-17 1E-21 179.6 13.8 103 14-123 471-582 (924)
338 PRK13540 cytochrome c biogenes 99.7 3.4E-17 7.4E-22 151.9 10.5 91 8-105 106-196 (200)
339 COG4674 Uncharacterized ABC-ty 99.7 3.1E-17 6.7E-22 146.9 9.5 112 5-123 123-234 (249)
340 PLN03232 ABC transporter C fam 99.7 4.6E-17 9.9E-22 190.2 13.9 113 7-123 707-827 (1495)
341 PLN03130 ABC transporter C fam 99.7 5.7E-17 1.2E-21 189.9 14.5 113 8-124 1342-1461(1622)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 4.1E-17 8.9E-22 143.6 10.0 76 33-112 69-144 (144)
343 cd03223 ABCD_peroxisomal_ALDP 99.7 5E-17 1.1E-21 146.5 10.2 75 32-111 89-163 (166)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.1E-16 2.4E-21 170.5 14.1 103 9-120 422-527 (552)
345 TIGR00957 MRP_assoc_pro multi 99.7 9.7E-17 2.1E-21 187.8 14.7 113 8-124 1389-1508(1522)
346 PRK11819 putative ABC transpor 99.7 1.3E-16 2.8E-21 170.2 14.0 104 9-121 424-530 (556)
347 COG1134 TagH ABC-type polysacc 99.7 2.2E-16 4.8E-21 146.8 13.5 123 1-129 119-241 (249)
348 PLN03130 ABC transporter C fam 99.7 1.2E-16 2.7E-21 187.1 14.3 113 7-123 707-827 (1622)
349 PTZ00243 ABC transporter; Prov 99.7 1.4E-16 3.1E-21 186.2 14.4 114 7-124 1412-1533(1560)
350 PRK13541 cytochrome c biogenes 99.7 9.8E-17 2.1E-21 148.3 10.4 83 8-95 102-184 (195)
351 TIGR01271 CFTR_protein cystic 99.7 1.6E-16 3.5E-21 185.5 13.9 113 7-123 1320-1439(1490)
352 COG4107 PhnK ABC-type phosphon 99.7 2.3E-16 5E-21 138.8 11.3 114 5-123 126-240 (258)
353 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.9E-16 4.1E-21 141.2 11.1 77 35-112 81-157 (157)
354 TIGR02857 CydD thiol reductant 99.7 1.3E-16 2.8E-21 169.3 11.2 98 7-108 425-529 (529)
355 COG3845 ABC-type uncharacteriz 99.7 3.6E-16 7.7E-21 157.5 13.1 111 2-118 113-223 (501)
356 COG1129 MglA ABC-type sugar tr 99.7 2.8E-16 6.2E-21 161.0 12.6 112 3-120 374-486 (500)
357 PRK00349 uvrA excinuclease ABC 99.7 4.2E-16 9.2E-21 172.5 14.6 108 9-123 809-926 (943)
358 PRK00635 excinuclease ABC subu 99.7 4.3E-16 9.3E-21 179.6 15.1 112 4-123 784-905 (1809)
359 COG5265 ATM1 ABC-type transpor 99.7 2.4E-16 5.1E-21 155.6 10.5 102 19-124 385-486 (497)
360 PRK00635 excinuclease ABC subu 99.7 6.4E-16 1.4E-20 178.1 14.5 102 14-122 460-570 (1809)
361 KOG0056 Heavy metal exporter H 99.7 2.7E-16 5.8E-21 157.2 9.7 104 17-124 658-761 (790)
362 PRK11147 ABC transporter ATPas 99.7 5.9E-16 1.3E-20 167.5 12.5 106 7-121 417-525 (635)
363 cd03279 ABC_sbcCD SbcCD and ot 99.6 9.8E-16 2.1E-20 143.7 12.1 93 14-112 108-210 (213)
364 TIGR00630 uvra excinuclease AB 99.6 1.2E-15 2.6E-20 168.6 14.3 107 9-122 807-923 (924)
365 TIGR00954 3a01203 Peroxysomal 99.6 7.3E-16 1.6E-20 167.2 12.4 98 7-109 551-652 (659)
366 TIGR00957 MRP_assoc_pro multi 99.6 9.3E-16 2E-20 179.6 13.6 98 23-123 750-849 (1522)
367 TIGR01271 CFTR_protein cystic 99.6 1.2E-15 2.5E-20 178.3 13.7 96 24-123 539-635 (1490)
368 TIGR02868 CydC thiol reductant 99.6 7.7E-16 1.7E-20 163.4 10.4 86 7-94 437-529 (529)
369 COG0488 Uup ATPase components 99.6 1.7E-15 3.7E-20 158.5 11.4 104 7-120 132-236 (530)
370 cd03278 ABC_SMC_barmotin Barmo 99.6 2.3E-15 4.9E-20 139.5 10.7 92 8-110 95-190 (197)
371 PTZ00243 ABC transporter; Prov 99.6 3.8E-15 8.2E-20 174.3 14.6 96 25-123 774-869 (1560)
372 cd03275 ABC_SMC1_euk Eukaryoti 99.6 4.6E-15 1E-19 142.3 11.9 101 8-110 112-233 (247)
373 cd03273 ABC_SMC2_euk Eukaryoti 99.6 4E-15 8.6E-20 143.0 11.5 101 6-109 123-242 (251)
374 cd03276 ABC_SMC6_euk Eukaryoti 99.6 4.3E-15 9.4E-20 137.7 10.0 96 7-112 90-192 (198)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.6 7E-15 1.5E-19 140.4 11.0 77 30-109 154-234 (243)
376 COG1101 PhnK ABC-type uncharac 99.6 1.1E-14 2.4E-19 132.5 11.4 102 10-117 127-231 (263)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.6 6.2E-15 1.3E-19 138.1 8.1 92 11-110 109-204 (212)
378 COG4167 SapF ABC-type antimicr 99.6 3.7E-14 8.1E-19 125.9 12.2 117 2-123 121-238 (267)
379 cd03240 ABC_Rad50 The catalyti 99.5 1.9E-14 4.2E-19 134.0 9.7 81 30-112 111-200 (204)
380 COG4619 ABC-type uncharacteriz 99.5 3.5E-14 7.6E-19 124.5 9.8 101 8-113 111-212 (223)
381 COG4778 PhnL ABC-type phosphon 99.5 3.6E-14 7.9E-19 124.6 8.7 104 2-110 124-227 (235)
382 KOG0054 Multidrug resistance-a 99.5 1.1E-13 2.3E-18 156.2 12.7 114 7-123 610-730 (1381)
383 cd03239 ABC_SMC_head The struc 99.5 2.2E-13 4.8E-18 124.1 10.5 75 34-110 94-172 (178)
384 KOG0927 Predicted transporter 99.5 2.2E-13 4.7E-18 138.4 10.4 108 5-120 196-305 (614)
385 COG3845 ABC-type uncharacteriz 99.5 2.5E-13 5.3E-18 137.2 10.4 115 3-122 376-490 (501)
386 cd03277 ABC_SMC5_euk Eukaryoti 99.4 2.8E-13 6E-18 127.0 8.4 82 30-112 122-211 (213)
387 COG4133 CcmA ABC-type transpor 99.4 6.9E-13 1.5E-17 118.6 9.2 84 8-96 109-192 (209)
388 COG4138 BtuD ABC-type cobalami 99.4 8.8E-14 1.9E-18 122.8 3.1 116 2-123 98-220 (248)
389 COG4170 SapD ABC-type antimicr 99.4 2.3E-13 5E-18 123.4 5.7 116 6-124 132-248 (330)
390 KOG0054 Multidrug resistance-a 99.4 1.7E-12 3.6E-17 146.7 13.1 98 23-124 1265-1362(1381)
391 cd03241 ABC_RecN RecN ATPase i 99.4 1.3E-12 2.7E-17 127.5 9.1 76 34-112 170-249 (276)
392 COG0488 Uup ATPase components 99.4 2.5E-12 5.3E-17 134.9 11.7 108 7-123 416-524 (530)
393 COG1245 Predicted ATPase, RNas 99.4 1.4E-12 3E-17 130.2 8.8 97 9-111 193-289 (591)
394 cd03280 ABC_MutS2 MutS2 homolo 99.4 5.4E-13 1.2E-17 123.8 5.1 82 33-117 90-172 (200)
395 TIGR01247 drrB daunorubicin re 99.4 4.2E-11 9.1E-16 113.8 17.8 194 233-433 1-202 (236)
396 cd03227 ABC_Class2 ABC-type Cl 99.3 3.7E-12 8E-17 114.3 9.6 75 34-110 77-155 (162)
397 TIGR00634 recN DNA repair prot 99.3 2.9E-12 6.3E-17 136.8 9.7 77 33-112 439-519 (563)
398 COG0178 UvrA Excinuclease ATPa 99.3 1.1E-11 2.4E-16 131.3 12.6 110 9-124 801-919 (935)
399 PRK10869 recombination and rep 99.3 8E-12 1.7E-16 132.6 10.4 104 6-112 375-509 (553)
400 PHA02562 46 endonuclease subun 99.3 7.8E-12 1.7E-16 133.7 10.0 79 31-113 465-555 (562)
401 TIGR00618 sbcc exonuclease Sbc 99.3 9.6E-12 2.1E-16 141.8 11.1 81 30-111 946-1036(1042)
402 COG1245 Predicted ATPase, RNas 99.3 1.1E-11 2.4E-16 123.9 8.4 94 10-109 436-530 (591)
403 COG4136 ABC-type uncharacteriz 99.2 2.1E-11 4.7E-16 105.2 7.5 86 4-94 109-195 (213)
404 KOG0062 ATPase component of AB 99.2 3.8E-11 8.2E-16 121.7 10.2 100 8-115 460-559 (582)
405 TIGR01291 nodJ ABC-2 type tran 99.2 8.1E-10 1.8E-14 106.3 18.5 197 227-432 7-213 (253)
406 PF00005 ABC_tran: ABC transpo 99.2 3.5E-11 7.7E-16 104.3 7.3 57 6-63 81-137 (137)
407 COG4178 ABC-type uncharacteriz 99.2 3.6E-11 7.9E-16 126.0 8.6 100 7-109 487-587 (604)
408 TIGR03861 phenyl_ABC_PedC alco 99.2 2E-09 4.4E-14 103.5 19.9 205 224-432 1-217 (253)
409 KOG0062 ATPase component of AB 99.2 1.5E-11 3.2E-16 124.6 4.9 106 7-120 175-281 (582)
410 COG0178 UvrA Excinuclease ATPa 99.1 3.5E-10 7.5E-15 120.2 13.4 91 32-124 479-577 (935)
411 KOG0927 Predicted transporter 99.1 7.4E-11 1.6E-15 120.3 7.7 107 5-120 484-592 (614)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.1 5.3E-11 1.2E-15 112.3 6.1 83 32-118 87-175 (222)
413 TIGR00025 Mtu_efflux ABC trans 99.1 4.4E-09 9.6E-14 99.8 17.8 187 239-433 2-194 (232)
414 PRK03918 chromosome segregatio 99.1 2.5E-10 5.4E-15 128.4 9.9 77 31-109 785-867 (880)
415 PRK10246 exonuclease subunit S 99.1 6.1E-10 1.3E-14 126.8 11.1 79 30-109 945-1031(1047)
416 cd03242 ABC_RecF RecF is a rec 99.0 5.4E-10 1.2E-14 108.6 8.3 77 32-113 181-269 (270)
417 PRK01156 chromosome segregatio 99.0 3.1E-09 6.8E-14 119.8 13.6 77 31-109 798-883 (895)
418 COG4615 PvdE ABC-type sideroph 99.0 9.4E-10 2E-14 108.5 7.1 110 7-118 421-531 (546)
419 TIGR03062 pip_yhgE_Cterm YhgE/ 99.0 3.7E-09 8E-14 98.5 10.2 115 315-435 58-172 (208)
420 TIGR00606 rad50 rad50. This fa 98.9 2.7E-09 5.9E-14 124.3 8.7 69 33-102 1198-1277(1311)
421 PRK15066 inner membrane transp 98.9 1.1E-07 2.3E-12 91.7 18.3 202 224-432 7-215 (257)
422 KOG0066 eIF2-interacting prote 98.9 3.6E-09 7.8E-14 105.4 7.5 81 8-95 682-762 (807)
423 TIGR02168 SMC_prok_B chromosom 98.9 3.3E-09 7.2E-14 122.5 7.7 76 31-109 1086-1165(1179)
424 PRK00064 recF recombination pr 98.8 7.7E-09 1.7E-13 104.6 8.6 79 31-113 270-359 (361)
425 cd03243 ABC_MutS_homologs The 98.8 1.4E-08 3E-13 94.4 8.9 85 33-120 90-175 (202)
426 KOG2355 Predicted ABC-type tra 98.8 1.2E-08 2.6E-13 92.8 8.0 109 8-124 128-237 (291)
427 TIGR02169 SMC_prok_A chromosom 98.8 8.8E-09 1.9E-13 119.1 8.2 77 31-110 1071-1151(1164)
428 smart00534 MUTSac ATPase domai 98.8 6E-09 1.3E-13 95.5 4.6 79 33-114 60-140 (185)
429 PRK02224 chromosome segregatio 98.8 2.1E-08 4.6E-13 113.0 9.4 77 32-110 779-868 (880)
430 KOG0066 eIF2-interacting prote 98.7 3.6E-09 7.7E-14 105.4 2.2 104 8-119 390-494 (807)
431 KOG0060 Long-chain acyl-CoA tr 98.7 6E-08 1.3E-12 100.0 10.2 102 7-113 537-645 (659)
432 PRK14079 recF recombination pr 98.6 6.3E-08 1.4E-12 97.5 7.9 75 33-115 262-345 (349)
433 PF02463 SMC_N: RecF/RecN/SMC 98.6 3.4E-07 7.4E-12 86.0 11.6 88 8-109 121-212 (220)
434 TIGR00611 recf recF protein. A 98.6 8E-08 1.7E-12 97.3 7.1 60 33-95 274-342 (365)
435 COG0419 SbcC ATPase involved i 98.5 4.3E-07 9.4E-12 102.5 10.6 87 22-110 801-897 (908)
436 cd03282 ABC_MSH4_euk MutS4 hom 98.5 2.1E-07 4.6E-12 86.6 6.4 67 33-102 90-157 (204)
437 cd01124 KaiC KaiC is a circadi 98.5 3.3E-07 7.2E-12 83.4 7.6 80 30-109 67-163 (187)
438 COG2401 ABC-type ATPase fused 98.5 4E-07 8.7E-12 90.7 8.4 100 10-113 486-587 (593)
439 KOG0063 RNAse L inhibitor, ABC 98.5 2.8E-07 6.1E-12 92.1 7.1 97 8-110 192-288 (592)
440 cd03283 ABC_MutS-like MutS-lik 98.4 1.1E-06 2.3E-11 81.6 9.8 71 37-108 88-163 (199)
441 TIGR01248 drrC daunorubicin re 98.4 2.7E-06 5.9E-11 75.4 11.6 128 300-432 16-145 (152)
442 PF13304 AAA_21: AAA domain; P 98.4 7.9E-07 1.7E-11 83.4 8.5 64 32-95 234-300 (303)
443 cd03284 ABC_MutS1 MutS1 homolo 98.4 5.2E-07 1.1E-11 84.8 5.7 86 33-122 84-179 (216)
444 TIGR02680 conserved hypothetic 98.3 8E-07 1.7E-11 103.7 7.3 59 32-93 1245-1315(1353)
445 KOG0064 Peroxisomal long-chain 98.3 7.5E-07 1.6E-11 91.1 4.9 85 8-95 582-670 (728)
446 PRK00409 recombination and DNA 98.2 1.9E-06 4.1E-11 95.2 7.4 82 32-116 388-470 (782)
447 KOG0063 RNAse L inhibitor, ABC 98.2 1.4E-06 3.1E-11 87.2 5.7 96 8-109 435-531 (592)
448 COG0842 ABC-type multidrug tra 98.2 4E-05 8.8E-10 73.5 15.5 114 317-433 131-245 (286)
449 PF13558 SbcCD_C: Putative exo 98.2 3.7E-06 8E-11 67.8 6.5 49 31-79 29-90 (90)
450 cd03281 ABC_MSH5_euk MutS5 hom 98.2 3.4E-06 7.3E-11 79.1 7.0 62 34-95 88-155 (213)
451 TIGR01069 mutS2 MutS2 family p 98.1 6.9E-06 1.5E-10 90.6 7.3 64 32-96 383-447 (771)
452 PRK13695 putative NTPase; Prov 98.0 1.1E-05 2.4E-10 73.0 6.9 81 33-117 77-157 (174)
453 TIGR03518 ABC_perm_GldF glidin 98.0 0.00058 1.3E-08 65.2 18.4 191 228-430 2-208 (240)
454 PTZ00132 GTP-binding nuclear p 98.0 7.2E-06 1.6E-10 76.7 5.2 45 38-82 156-205 (215)
455 TIGR02858 spore_III_AA stage I 97.8 4.7E-05 1E-09 73.8 7.5 68 45-121 187-266 (270)
456 PRK13830 conjugal transfer pro 97.8 4E-05 8.7E-10 85.5 7.4 71 49-119 649-728 (818)
457 COG1682 TagG ABC-type polysacc 97.8 0.0052 1.1E-07 59.4 20.5 194 223-432 16-219 (263)
458 cd01125 repA Hexameric Replica 97.7 0.00014 3.1E-09 69.3 7.8 86 2-95 52-160 (239)
459 cd03286 ABC_MSH6_euk MutS6 hom 97.6 0.00014 3E-09 68.4 6.9 58 38-95 95-154 (218)
460 PRK08533 flagellar accessory p 97.6 0.00016 3.5E-09 68.6 7.2 75 35-109 96-184 (230)
461 PRK06067 flagellar accessory p 97.5 0.00052 1.1E-08 65.1 9.2 76 35-110 101-187 (234)
462 PF12679 ABC2_membrane_2: ABC- 97.5 0.013 2.9E-07 56.4 18.7 95 303-397 88-199 (277)
463 cd01128 rho_factor Transcripti 97.4 5.6E-05 1.2E-09 72.5 1.8 77 31-113 126-211 (249)
464 cd03287 ABC_MSH3_euk MutS3 hom 97.4 0.00041 8.9E-09 65.4 7.2 64 37-102 95-160 (222)
465 COG3910 Predicted ATPase [Gene 97.4 0.00052 1.1E-08 62.2 7.0 68 27-95 122-189 (233)
466 PF12698 ABC2_membrane_3: ABC- 97.4 4.4E-05 9.5E-10 75.0 0.0 127 299-433 183-314 (344)
467 PRK15176 Vi polysaccharide exp 97.3 0.042 9.1E-07 53.3 20.1 62 366-432 159-223 (264)
468 cd01120 RecA-like_NTPases RecA 97.3 0.00077 1.7E-08 59.0 7.1 63 35-97 68-140 (165)
469 PF13175 AAA_15: AAA ATPase do 97.2 0.00088 1.9E-08 68.5 7.6 65 31-95 338-413 (415)
470 PRK13891 conjugal transfer pro 97.0 0.0012 2.6E-08 74.2 7.3 52 45-96 680-732 (852)
471 PF03379 CcmB: CcmB protein; 97.0 0.05 1.1E-06 51.1 16.6 140 227-380 1-149 (215)
472 COG4637 Predicted ATPase [Gene 96.7 0.0051 1.1E-07 60.0 7.7 67 33-102 269-337 (373)
473 COG0497 RecN ATPase involved i 96.7 0.0053 1.2E-07 64.6 8.5 75 33-110 430-508 (557)
474 PF13166 AAA_13: AAA domain 96.4 0.021 4.6E-07 63.1 11.3 87 8-94 462-571 (712)
475 COG1196 Smc Chromosome segrega 96.3 0.006 1.3E-07 71.1 6.1 73 33-108 1065-1141(1163)
476 TIGR02655 circ_KaiC circadian 96.2 0.00066 1.4E-08 71.5 -1.7 67 33-109 114-190 (484)
477 PRK13873 conjugal transfer ATP 96.2 0.0095 2.1E-07 66.9 7.3 62 49-110 632-702 (811)
478 KOG0964 Structural maintenance 96.2 0.0037 7.9E-08 68.3 3.7 72 33-107 1096-1171(1200)
479 TIGR02788 VirB11 P-type DNA tr 96.1 0.0062 1.3E-07 60.4 4.4 72 43-123 209-280 (308)
480 PRK07721 fliI flagellum-specif 95.8 0.027 5.9E-07 58.4 7.7 85 34-121 223-340 (438)
481 TIGR03185 DNA_S_dndD DNA sulfu 95.7 0.023 5E-07 62.2 7.2 58 32-93 549-613 (650)
482 TIGR01190 ccmB heme exporter p 95.5 0.86 1.9E-05 42.6 15.9 135 231-380 2-146 (211)
483 COG1277 NosY ABC-type transpor 95.5 1.9 4.1E-05 41.5 19.0 170 226-398 3-190 (278)
484 KOG0962 DNA repair protein RAD 95.2 0.03 6.5E-07 63.8 5.9 59 35-93 1184-1253(1294)
485 PRK13898 type IV secretion sys 95.0 0.063 1.4E-06 60.2 7.9 49 48-96 638-687 (800)
486 PRK06793 fliI flagellum-specif 95.0 0.03 6.6E-07 57.8 4.8 82 31-119 218-306 (432)
487 PRK05399 DNA mismatch repair p 95.0 0.088 1.9E-06 59.4 8.8 76 25-104 655-738 (854)
488 PRK14088 dnaA chromosomal repl 95.0 0.052 1.1E-06 56.6 6.6 100 51-152 193-300 (440)
489 cd01131 PilT Pilus retraction 94.9 0.042 9.1E-07 50.8 5.1 57 44-109 66-122 (198)
490 TIGR00152 dephospho-CoA kinase 94.6 0.02 4.3E-07 52.3 2.3 73 37-111 60-133 (188)
491 KOG0996 Structural maintenance 94.6 0.033 7.2E-07 62.3 4.2 75 32-109 1193-1271(1293)
492 PF12051 DUF3533: Protein of u 93.9 1.4 3.1E-05 44.9 14.3 112 315-434 240-356 (382)
493 COG4587 ABC-type uncharacteriz 93.8 4.1 8.8E-05 38.8 15.6 191 222-413 3-204 (268)
494 TIGR03733 lanti_perm_MutG lant 93.7 6.7 0.00015 37.4 19.7 83 300-382 71-158 (248)
495 COG4694 Uncharacterized protei 93.6 0.2 4.3E-06 52.3 7.1 69 34-103 529-605 (758)
496 PRK08699 DNA polymerase III su 93.1 0.11 2.3E-06 52.0 4.4 68 56-131 116-186 (325)
497 PRK04296 thymidine kinase; Pro 92.8 0.28 6.2E-06 44.9 6.5 56 51-110 77-141 (190)
498 cd00561 CobA_CobO_BtuR ATP:cor 92.5 0.31 6.7E-06 43.5 6.0 69 41-110 82-154 (159)
499 KOG0933 Structural maintenance 92.1 0.11 2.4E-06 57.5 3.1 71 32-105 1080-1154(1174)
500 COG1195 RecF Recombinational D 92.1 0.34 7.3E-06 48.8 6.3 76 33-113 274-361 (363)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-84 Score=692.38 Aligned_cols=411 Identities=36% Similarity=0.670 Sum_probs=361.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++|++++|++++++|||++|+||++|+...||+||||||||+||+||++||.||||||||||||+.++.++++.||++
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l 216 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL 216 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence 36789999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK 160 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 160 (437)
|++|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.+ +....
T Consensus 217 A~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~---- 291 (613)
T KOG0061|consen 217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD-SGTRE---- 291 (613)
T ss_pred HhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC-CCchh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753 10000
Q ss_pred CCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHH-HHhhccCcccccccCCCCCHHHHHHHHHHHHHHHhh
Q 013741 161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRV-RELAHNEQEETVLSKDRASWWKQLCILSHRSFLNML 239 (437)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~ 239 (437)
...........+.++..+...+..... ..... .........++||.|++.|.+|.+++.+
T Consensus 292 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~q~~~L~~R~~~~~~ 352 (613)
T KOG0061|consen 292 ----------------LEEAVRIAKLINKFSQTDNLKKTLEALEKSLST---SKKVEIGTSPSWWTQFKILLKRSLKNIR 352 (613)
T ss_pred ----------------HHhHHHHHHHhhhccccchhhhhHHHHhhhccc---ccccccccCCcHHHHHHHHHHHHhHHHh
Confidence 000111112222222111111100000 00000 0000111278999999999999999999
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHHHHhhhccCCCCcchHH
Q 013741 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEHKASYRERISCHYGEAV 318 (437)
Q Consensus 240 Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~~~ 318 (437)
|||.+...|+++.+++|+++|++||+++++..++++|.|+++|+..++.+.++ .+++.|+.||++|.||+.+|+|+.++
T Consensus 353 R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~ 432 (613)
T KOG0061|consen 353 RDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSS 432 (613)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999999999999999999999999999998877665 47999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 013741 319 FVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMM 398 (437)
Q Consensus 319 y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~ 398 (437)
|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++++++.+++++.||..+|++++++++..++
T Consensus 433 y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~ 512 (613)
T KOG0061|consen 433 YYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFL 512 (613)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 399 MVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 399 lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
+|+||+++.++||.| |+| ++|+|+++|++||+++|||
T Consensus 513 l~~G~fi~~~~ip~~-~~w-~~~~S~~ry~~e~l~~n~~ 549 (613)
T KOG0061|consen 513 LFGGFFINFDSIPKY-FRW-ISYLSYFRYAFEALLINQF 549 (613)
T ss_pred HHhhhhcCcccccHH-HHH-HHHHhHHHHHHHHHHHHHh
Confidence 999999999999985 788 9999999999999999997
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9e-82 Score=676.57 Aligned_cols=409 Identities=25% Similarity=0.433 Sum_probs=352.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++++++++++++.+||++++||.+|+...++||||||||++||++|+.+|++|+|||||+|||+.++.++++.|+++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~ 254 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCccccccccccCC
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQ 162 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 162 (437)
+|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||.+.|||||++++++.+.+. ...
T Consensus 255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~--~~~---- 328 (659)
T PLN03211 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT--DGV---- 328 (659)
T ss_pred CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC--CCc----
Confidence 89999999999988899999999999999999999999999999999999999999999999998653210 000
Q ss_pred CCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHh--hc-c-------Ccccc--cccCCCCCHHHHHHHH
Q 013741 163 APTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVREL--AH-N-------EQEET--VLSKDRASWWKQLCIL 230 (437)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~--~~-~-------~~~~~--~~~~~~~~~~~Q~~~L 230 (437)
...+ ..+..+.+.+.|++.. ..+..+..+.. .. . ..... ....+.++||+|+++|
T Consensus 329 ~~~~------------~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 395 (659)
T PLN03211 329 SERE------------KPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395 (659)
T ss_pred cccc------------cchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHH
Confidence 0000 0111233445554321 11111111100 00 0 00000 0112457899999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHH-HhhhhhhhHHHHHHHhhhcc
Q 013741 231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLIC-LSVGGLPSFIEEHKASYRER 309 (437)
Q Consensus 231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~-~~~~~~~~~~~er~v~~rE~ 309 (437)
++|++++ +||+.+...|+++.+++|+++|++||+++ +.++++|.|++||++.++.+ .++..++.|+.||++|+||+
T Consensus 396 ~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~ 472 (659)
T PLN03211 396 LQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKER 472 (659)
T ss_pred HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999998 89999999999999999999999999985 67899999999998887665 44678999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 013741 310 ISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGV 389 (437)
Q Consensus 310 ~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~ 389 (437)
.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++|++|++++++..++++++|+++++++||+.+|+.+
T Consensus 473 ~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~ 552 (659)
T PLN03211 473 ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTI 552 (659)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
+++++.++++||||+++ +||+| |+| ++|+||++|++||+++|||
T Consensus 553 ~~~~~~~~~lfsGf~i~--~ip~~-~~W-~~ylS~~~y~~eal~~nef 596 (659)
T PLN03211 553 VTVTMLAFVLTGGFYVH--KLPSC-MAW-IKYISTTFYSYRLLINVQY 596 (659)
T ss_pred HHHHHHHHHHHhhhhHh--hchHH-HHH-HHHhCHHHHHHHHHHHHhc
Confidence 99999999999999997 79986 999 9999999999999999998
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.5e-81 Score=667.68 Aligned_cols=412 Identities=28% Similarity=0.537 Sum_probs=369.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNW-HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~-~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++++++++++++.+||.+++||.+|+. ..++|||||||||+||++|+++|++++|||||+|||+.++.++++.|+++
T Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHH
Confidence 35677789999999999999999999986 37899999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK 160 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 160 (437)
+++|+|+|+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||++.||+||++++++.+.+.
T Consensus 213 ~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~------- 285 (617)
T TIGR00955 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS------- 285 (617)
T ss_pred HhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------
Confidence 9889999999999998999999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCc-----cc-ccccCCCCCHHHHHHHHHHHH
Q 013741 161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQ-----EE-TVLSKDRASWWKQLCILSHRS 234 (437)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~Q~~~L~~R~ 234 (437)
+ ....+..+++.+.|+++..+++..+........++ .. .....+..+|++|+++|++|+
T Consensus 286 -----~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~ 350 (617)
T TIGR00955 286 -----E----------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRS 350 (617)
T ss_pred -----c----------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHH
Confidence 0 00123345677788877666555444332211110 00 012345689999999999999
Q ss_pred HHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHh-hhhhhhHHHHHHHhhhccCCCC
Q 013741 235 FLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLS-VGGLPSFIEEHKASYRERISCH 313 (437)
Q Consensus 235 ~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~-~~~~~~~~~er~v~~rE~~~g~ 313 (437)
+++.+|||.++..|+++.+++|+++|++|++++++++++++|.|++|++..++.+.+ ...++.++.||++|+||+.+|+
T Consensus 351 ~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~ 430 (617)
T TIGR00955 351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430 (617)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999999999999999888777765 4668899999999999999999
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013741 314 YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTAL 393 (437)
Q Consensus 314 Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~ 393 (437)
|++++|++|++++|+|+.++.+++|++|+|||+|+++++++||+|++++++..+++.++++++++++|+..+|+.+++++
T Consensus 431 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 510 (617)
T TIGR00955 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPF 510 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 394 IVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 394 ~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
+.++++|+||+++.++||.| |+| ++|+||++|++||++.|||
T Consensus 511 ~~~~~lf~G~~i~~~~ip~~-~~W-~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 511 VIPFLLFGGFFINSDSIPVY-FKW-LSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHhhcccChhhccHH-HHH-HHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999985 999 9999999999999999998
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.4e-80 Score=707.99 Aligned_cols=415 Identities=22% Similarity=0.340 Sum_probs=369.6
Q ss_pred HHHHHH-HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDI-VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~-v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.++ ++++++.+||++++||++|+..+++|||||||||+||++|+++|++++|||||+|||+.++.++++.|+++++
T Consensus 178 ~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~ 257 (1394)
T TIGR00956 178 EEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257 (1394)
T ss_pred HHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 444444 5779999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCccccccccccC
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKS 161 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 161 (437)
.|+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++++.+.++......
T Consensus 258 ~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e-- 335 (1394)
T TIGR00956 258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYE-- 335 (1394)
T ss_pred hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcccccc--
Confidence 59999999999998999999999999999999999999999999999999999999999999987654322110000
Q ss_pred CCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccC---------------cc---cccccCCCCCH
Q 013741 162 QAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNE---------------QE---ETVLSKDRASW 223 (437)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~ 223 (437)
... . ...+++.+.|++|+.+++..+.++...... .. ......+..|+
T Consensus 336 ---~~~--------~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 400 (1394)
T TIGR00956 336 ---KKV--------P----RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSF 400 (1394)
T ss_pred ---ccC--------C----CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCH
Confidence 000 0 112457888888877666555544321110 00 00123466899
Q ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 013741 224 WKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHK 303 (437)
Q Consensus 224 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~ 303 (437)
|+|+++|++|++++.+|||.+++.|+++.+++|+++|++||+++++++++++|.|++||++.+.+++++..++.++.||+
T Consensus 401 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~ 480 (1394)
T TIGR00956 401 SMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARP 480 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred HhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 013741 304 ASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNV 383 (437)
Q Consensus 304 v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~ 383 (437)
||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++++++++++||.
T Consensus 481 i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~ 560 (1394)
T TIGR00956 481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL 560 (1394)
T ss_pred ceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 384 LMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 384 ~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
.+|+.++++++.++++|+||++|.++||.| |+| ++|+||++|++||+++|||
T Consensus 561 ~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~-~~W-~~yisp~~yafeal~~nef 612 (1394)
T TIGR00956 561 SEAMTPAAILLLALSIYTGFAIPRPSMLGW-SKW-IYYVNPLAYAFESLMVNEF 612 (1394)
T ss_pred HHHHHHHHHHHHHHHHHcccccChhhccHH-HHH-HHHcCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999985 999 9999999999999999998
No 5
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.5e-80 Score=668.08 Aligned_cols=406 Identities=28% Similarity=0.457 Sum_probs=369.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP-TVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p-~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+|+.+.||++++.++|++++|..||++. +|||.+||||++||+||++|| .||||||||||||+.+|..+++.+|+
T Consensus 897 v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrk 975 (1391)
T KOG0065|consen 897 VSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRK 975 (1391)
T ss_pred CCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHH
Confidence 3678888999999999999999999999988 999999999999999999999 89999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEeeChh----HHHHHHHHcC-CCCCCCCCchHHHHHhhccCccc
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGDAK----MAVKFFAEAG-FPCPSRRNPSDHFLRCINSDFDK 153 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~~G~~~----~~~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~ 153 (437)
+++.|+||+||||||+.++++.||++++|+ +|++||+||.. .+++||+++| .+||+..|||||++|++....+.
T Consensus 976 la~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~ 1055 (1391)
T KOG0065|consen 976 LADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA 1055 (1391)
T ss_pred HHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc
Confidence 999999999999999999999999999997 79999999985 4677999986 89999999999999998643211
Q ss_pred cccccccCCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCcc-ccc---ccCCCCCHHHHHHH
Q 013741 154 VAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQE-ETV---LSKDRASWWKQLCI 229 (437)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~Q~~~ 229 (437)
+...++.+.|++|+.++++.+.+++....... ..+ ++++++|+|.|++.
T Consensus 1056 ---------------------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~ 1108 (1391)
T KOG0065|consen 1056 ---------------------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKL 1108 (1391)
T ss_pred ---------------------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHH
Confidence 11136899999999999999988887654333 211 45678999999999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhhhh-hhhHHHHHHHhhhc
Q 013741 230 LSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGG-LPSFIEEHKASYRE 308 (437)
Q Consensus 230 L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~~~-~~~~~~er~v~~rE 308 (437)
+++|++..+||+|.+.++|++..++.|+++|+.||+.|++.+++||..++.|..+++......+. .+....||.+++||
T Consensus 1109 ~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE 1188 (1391)
T KOG0065|consen 1109 CLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRE 1188 (1391)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeee
Confidence 99999999999999999999999999999999999999999999999998887766655444443 44556799999999
Q ss_pred cCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 013741 309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMG 388 (437)
Q Consensus 309 ~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 388 (437)
+++|+||+.+|++|++++|+|+.++++++|.+++|+|+|+..++.+|++|++..+++.+....+|+++.+++||.++|.+
T Consensus 1189 ~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav 1268 (1391)
T KOG0065|consen 1189 RASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAV 1268 (1391)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhc
Q 013741 389 VGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDI 436 (437)
Q Consensus 389 ~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NE 436 (437)
+.+.+..++.+|||+++|++.||.| |+| |||+||+.|.+++++.-+
T Consensus 1269 ~~s~~~s~~~~F~G~l~p~~~iP~f-W~w-my~lsP~ty~l~gli~~~ 1314 (1391)
T KOG0065|consen 1269 IASLFFSFWNLFSGFLQPRSLIPKF-WIW-MYYLSPVTYTLEGLISSQ 1314 (1391)
T ss_pred HHHHHHHHHHHhcccccccccccce-eee-eeecCcHHHHHHHHHHHH
Confidence 9999999999999999999999995 999 999999999999998643
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.9e-78 Score=691.91 Aligned_cols=406 Identities=24% Similarity=0.410 Sum_probs=364.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++++.++|+++++.+||.+++|+.+|++.+++|||||||||+||++|+++|++|||||||+|||+.++..+++.|+++++
T Consensus 988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~ 1067 (1470)
T PLN03140 988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067 (1470)
T ss_pred HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEeeCh----hHHHHHHHHc-CCC-CCCCCCchHHHHHhhccCccccc
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSN-GETIYFGDA----KMAVKFFAEA-GFP-CPSRRNPSDHFLRCINSDFDKVA 155 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~-G~~v~~G~~----~~~~~~f~~~-g~~-~~~~~~~~d~~~~~~~~~~~~~~ 155 (437)
+|+|||+++|||+.+++++||++++|++ |+++|+|++ +++.+||+++ |++ ||+..|||||++++++.+.+.
T Consensus 1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-- 1145 (1470)
T PLN03140 1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-- 1145 (1470)
T ss_pred CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--
Confidence 9999999999999889999999999996 899999996 5799999997 664 999999999999987532110
Q ss_pred cccccCCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCccccc---ccCCCCCHHHHHHHHHH
Q 013741 156 GSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETV---LSKDRASWWKQLCILSH 232 (437)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Q~~~L~~ 232 (437)
....++.+.|++|+.+++..+.+++.........+ ...+.+++|+|+++|++
T Consensus 1146 -------------------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 1200 (1470)
T PLN03140 1146 -------------------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLW 1200 (1470)
T ss_pred -------------------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHH
Confidence 00125788899998887776665544332111111 24567899999999999
Q ss_pred HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHhhhhHHHHHHHHHHHHHh-hhhhhhHHHHHHHhhhc
Q 013741 233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSN---PAIYGRPKCVAFIYGFLICLS-VGGLPSFIEEHKASYRE 308 (437)
Q Consensus 233 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~---~~i~~r~~~l~f~~~~~~~~~-~~~~~~~~~er~v~~rE 308 (437)
|+++++||||.+.++|+++.+++|+++|++||++++++ +++++|.|++|+++.++.+.. .+.+|.+..||++|+||
T Consensus 1201 R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~RE 1280 (1470)
T PLN03140 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRE 1280 (1470)
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865 567788999888887776644 45679999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 013741 309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMG 388 (437)
Q Consensus 309 ~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 388 (437)
|++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++|+++++++||..+|..
T Consensus 1281 r~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~ 1360 (1470)
T PLN03140 1281 RAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAI 1360 (1470)
T ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 389 VGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 389 ~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
++++++.++++||||++|.++||.| |+| ++|+||++|+++|++.|||
T Consensus 1361 ~~~~~~~~~~lf~Gf~i~~~~iP~~-~~W-~~~isp~~y~~~~l~~~~f 1407 (1470)
T PLN03140 1361 FAAAFYGLFNLFSGFFIPRPKIPKW-WVW-YYWICPVAWTVYGLIVSQY 1407 (1470)
T ss_pred HHHHHHHHHHHHeeeccChHHCchH-HHH-HHHcCHHHHHHhhhHHHHh
Confidence 9999999999999999999999985 999 9999999999999999998
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-78 Score=692.31 Aligned_cols=412 Identities=21% Similarity=0.375 Sum_probs=363.4
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV 87 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv 87 (437)
.++++++.+||++|+||.+|+..+++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++ .|+|+
T Consensus 311 ~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv 390 (1470)
T PLN03140 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390 (1470)
T ss_pred HHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999987 68999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCccccccccccCCCCCCC
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEI 167 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (437)
|+++|||+.+++++||+|++|++|+++|+||++++.+||+++|++||++.|||||++++++.+..+.. . .....
T Consensus 391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~--~----~~~~~ 464 (1470)
T PLN03140 391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQY--W----ADRNK 464 (1470)
T ss_pred EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhh--h----hccCC
Confidence 99999999999999999999999999999999999999999999999999999999998764321100 0 00000
Q ss_pred CCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccC---cccccccCCCCCHHHHHHHHHHHHHHHhhhChHH
Q 013741 168 PMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNE---QEETVLSKDRASWWKQLCILSHRSFLNMLRDMGY 244 (437)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~ 244 (437)
+.... ..+++.+.|+++..+++..++++...... ......+.+..+++.|++.|++|+++.++||+..
T Consensus 465 -----p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~ 535 (1470)
T PLN03140 465 -----PYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFV 535 (1470)
T ss_pred -----ccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 00001 13457888998887766655544322111 1111124567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCh---hhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhccCCCCcchHHHHH
Q 013741 245 YWLRIVFYVLVSITVGILYLNVGLSN---PAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVL 321 (437)
Q Consensus 245 ~~~r~~~~~~~~li~G~~f~~~~~~~---~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~l 321 (437)
+..|+++.+++|+++|++||+++.++ .+.+.+.|++||++.+.++++++.++.++.||+||+|||+.++|++++|++
T Consensus 536 ~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~l 615 (1470)
T PLN03140 536 YVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTL 615 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHH
Confidence 99999999999999999999997543 345567788888888888888888999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhh
Q 013741 322 SNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVS 401 (437)
Q Consensus 322 a~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~ 401 (437)
|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++++++++++|++.+|+.++++++.++++|+
T Consensus 616 a~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~ 695 (1470)
T PLN03140 616 PTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLG 695 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 402 PVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 402 Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
||++|.++||+| |+| ++|+||++||+||+++|||
T Consensus 696 Gf~i~~~~ip~w-~~W-~~yisp~~Ya~eal~~NEf 729 (1470)
T PLN03140 696 GFILPKGEIPNW-WEW-AYWVSPLSYGFNALAVNEM 729 (1470)
T ss_pred cceechHhCchH-HHH-HHHhCHHHHHHHHHHHHhc
Confidence 999999999985 999 9999999999999999998
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.2e-76 Score=673.92 Aligned_cols=406 Identities=26% Similarity=0.423 Sum_probs=360.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-VLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~-ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++++++|+++++.+||.+++|+.+|+. .++|||||||||+||++|+.+|+ +|||||||+|||+.++.++++.|+++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 34567789999999999999999999864 34899999999999999999997 99999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEeeCh----hHHHHHHHHcCC-CCCCCCCchHHHHHhhccCcccc
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG-ETIYFGDA----KMAVKFFAEAGF-PCPSRRNPSDHFLRCINSDFDKV 154 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G-~~v~~G~~----~~~~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~~ 154 (437)
+++|+|||+++|||+..+++.||++++|++| +++|+|++ +++.+||++.|+ +||++.|||||++|+++.+.+.
T Consensus 949 a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~- 1027 (1394)
T TIGR00956 949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA- 1027 (1394)
T ss_pred HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-
Confidence 9999999999999998788999999999987 99999997 578999999996 9999999999999987642110
Q ss_pred ccccccCCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCc-c----c-ccccCCCCCHHHHHH
Q 013741 155 AGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQ-E----E-TVLSKDRASWWKQLC 228 (437)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~Q~~ 228 (437)
+..+++.+.|+.|...++..+.++....... . . ...+.++++||+|++
T Consensus 1028 --------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 1081 (1394)
T TIGR00956 1028 --------------------------HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFK 1081 (1394)
T ss_pred --------------------------chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHH
Confidence 0012467788888776666555444322111 0 0 112356799999999
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-hh
Q 013741 229 ILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKAS-YR 307 (437)
Q Consensus 229 ~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~-~r 307 (437)
+|++|+++++||||.+.+.|+++.+++|+++|++||++++++.++++|.|++|+++.+..+.....+|.|+.||.+| +|
T Consensus 1082 ~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~R 1161 (1394)
T TIGR00956 1082 LVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVR 1161 (1394)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887766666667789999999886 99
Q ss_pred ccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013741 308 ERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSH-------YCHFCLSLFCCVSIVETCMMVVALLV 380 (437)
Q Consensus 308 E~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~-------f~~f~l~~~~~~~~~~~~~~~i~~~~ 380 (437)
|+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++...+++++|+++++++
T Consensus 1162 E~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~ 1241 (1394)
T TIGR00956 1162 ERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFN 1241 (1394)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999988866 99999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 381 PNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
|+..+|+.++++++.++++||||+++.++||.| |+| ++|+||++|+++|++.|||
T Consensus 1242 ~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~-~~w-~~~~sp~~y~~~~l~~~~~ 1296 (1394)
T TIGR00956 1242 PNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF-WIF-MYRCSPFTYLVQALLSTGL 1296 (1394)
T ss_pred CcHHHHHHHHHHHHHHHHHhccccCChhHCcHH-HhH-HHhcCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999986 999 9999999999999999997
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-74 Score=628.59 Aligned_cols=418 Identities=26% Similarity=0.418 Sum_probs=376.1
Q ss_pred HHHHHH-HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEIND-IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++|+.+ .+|.+++.+||+||+||+|||...||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.||+++
T Consensus 228 R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a 307 (1391)
T KOG0065|consen 228 RREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLA 307 (1391)
T ss_pred HHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHH
Confidence 444443 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK 160 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 160 (437)
+ .+.|.++++|||+.+++++||+|++|++|+++|+||.+++++||+++|+.||+++++|||+.++++.. ++.....
T Consensus 308 ~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~~~~~~-- 384 (1391)
T KOG0065|consen 308 HITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKK-DQEQYWN-- 384 (1391)
T ss_pred hhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCc-ccccccc--
Confidence 8 78999999999999999999999999999999999999999999999999999999999999987621 1100000
Q ss_pred CCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCccc---ccccCCCCCHHHHHHHHHHHHHHH
Q 013741 161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEE---TVLSKDRASWWKQLCILSHRSFLN 237 (437)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Q~~~L~~R~~~~ 237 (437)
....+.... ...++.+.|.+++.+++....++....+.... ...+.+..+.|.|++.|++|.+..
T Consensus 385 --------~~~~~~~~~----~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 385 --------KRSKPYPYT----SVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred --------ccCCCcccC----CHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 000011111 12567889999998888777766544332111 113567789999999999999999
Q ss_pred hhhChHHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhccCCCCcch
Q 013741 238 MLRDMGYYWLRIVFYVLVSITVGILYLNVG-LSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGE 316 (437)
Q Consensus 238 ~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~-~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~ 316 (437)
+.||..++..+.++.+++|+++|++|++.+ .+..+...|.|++||...+.++++++.++..++.||||+|||...+|++
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p 532 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPP 532 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccCh
Confidence 999999999999999999999999999999 7788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 013741 317 AVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVL 396 (437)
Q Consensus 317 ~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~ 396 (437)
++|.++..++++|+.++.+++|.+|+||++||.++|++||+++|+++++..++.+++++++++++++..|++++++.+..
T Consensus 533 ~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~ 612 (1391)
T KOG0065|consen 533 WAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLV 612 (1391)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 397 MMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 397 ~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
+.+++||+||.++||+| |+| ++|+||+.|++|++|+|||
T Consensus 613 i~m~~Gf~Ip~~~m~~W-~~W-i~yinPl~Y~fesl~~NEF 651 (1391)
T KOG0065|consen 613 LFMYGGFVIPKKDMPPW-FRW-IAYINPLMYAFESLMSNEF 651 (1391)
T ss_pred HHHHcceeeeccccchH-HHH-HHHHCHHHHHHHHHHHhhh
Confidence 99999999999999985 999 9999999999999999998
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.3e-26 Score=208.75 Aligned_cols=116 Identities=26% Similarity=0.384 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++|.+++..++|+.+||.+.+|. ++..|||||||||+|||+|+.+|+++++|||||.|||....++.+.+++|
T Consensus 108 ~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 108 LSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 4678888999999999999988875 56789999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|++|.|.||++|.. ....+.+|||++|++|+++..|++++.
T Consensus 183 A~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 183 AEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999996 578899999999999999999988855
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.9e-26 Score=217.17 Aligned_cols=116 Identities=27% Similarity=0.369 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++++++||.++++.+||++.+|. ++..|||||||||+|||||+.+|+||++|||||.|||.+...+.+.|+++
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 4789999999999999999987765 56789999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.+ .|.||++++|++ .-+-+.||||.+|++|+++..|+..++
T Consensus 188 n~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 188 NRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 87 699999999996 578999999999999999999998765
No 12
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.6e-26 Score=202.13 Aligned_cols=118 Identities=27% Similarity=0.449 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++++.+++.+++.+.|+|.++.|+.+| ++|-|+||||+||++|+++|++++|||||||||..+...+.+.++++
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~ 179 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh
Confidence 4677889999999999999999999998 59999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.++|++||.++|.. .++..+||+|++|++|++++.|++++...
T Consensus 180 k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 180 KNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999995 58999999999999999999999987654
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.6e-25 Score=219.35 Aligned_cols=118 Identities=34% Similarity=0.519 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+.+++++ ++||+|||||++||++|+++|+++||||||+|||+.++.++.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 345679999999999998555545 579999999999999999999999999999999999999999999999997
Q ss_pred C-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741 84 G-RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (437)
Q Consensus 84 g-~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~ 127 (437)
| +||++|+|++. ++..+||+|++|++|++++.|+.+++...+.
T Consensus 186 g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 186 GGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred CCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 7 89999999975 7899999999999999999999998776554
No 14
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.9e-25 Score=207.82 Aligned_cols=111 Identities=26% Similarity=0.491 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++.|++.|+.+|+.+.+|..+|. |||||+|||.|||+|+.+|++|+|||||+|+|+.++..+.++|++++++|+|
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 68999999999999999999984 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|++++|++. .+.+.||+|++|+ +++++.|+++++.+
T Consensus 192 Il~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 192 VLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred EEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 999999985 6899999999995 57889999987643
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=7.3e-25 Score=201.88 Aligned_cols=119 Identities=26% Similarity=0.403 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++++.++.|..-|+..||... +.+.++.+||||||||+++|||++.||+++|+||||+||||.++..+.++++++
T Consensus 116 lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 116 LPESLIRELVLMKLELVGLRGA----AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 4678888999999999999865 244578899999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+ -|.|+++++|+.. +++..+||+++|.+|+++..|+++++.+
T Consensus 192 ~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 192 NDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 98 5899999999974 7999999999999999999999998753
No 16
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.8e-25 Score=207.64 Aligned_cols=118 Identities=26% Similarity=0.455 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++|.+++|+++++.+||.+.++... ..|||||||||+||.+|+.+|++|+|||||+|||+.++.++++.+++|
T Consensus 110 ~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 110 LPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred CCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 356788899999999999999877654 579999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.++ |.|+|+++|+. ..+...+|++++|++|++++.|+++++.+
T Consensus 185 ~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 185 KEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 986 78999999996 57899999999999999999999876644
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=1e-24 Score=206.60 Aligned_cols=113 Identities=32% Similarity=0.485 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.++.|++.|+.+|+.+.++..+. .|||||||||.||++|+.+|++|+||||||.||...+.++++.++++++ +
T Consensus 114 ~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~ 188 (258)
T COG1120 114 EDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188 (258)
T ss_pred hHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence 334589999999999999998775 6999999999999999999999999999999999999999999999996 6
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|+++ ...++||++++|++|+++..|+++++.
T Consensus 189 ~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 189 GLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999986 688999999999999999999998764
No 18
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=5.1e-24 Score=197.39 Aligned_cols=119 Identities=19% Similarity=0.369 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++++++++++|+.+||++. ...+.+++.|||||+|||.+||||+.+|++++||||++.||+.++.++.+.++++.
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq 182 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHH
Confidence 577888999999999999752 23456888999999999999999999999999999999999999999999999999
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+ -|+|||+++|+. .|.+++.||+++|++|+++.+|+|+++..
T Consensus 183 ~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 183 KELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 8 599999999995 68999999999999999999999998864
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.91 E-value=1.1e-23 Score=207.94 Aligned_cols=116 Identities=26% Similarity=0.445 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.++..++++++++.++|.+.+++.++ +||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 186 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 34456688999999999988888775 6999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+|+|||+++|++. ++.++||++++|++|++++.|++++..+
T Consensus 187 ~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 187 RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999974 7899999999999999999999987754
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.4e-24 Score=194.38 Aligned_cols=114 Identities=27% Similarity=0.412 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.+++.-+.|+.+|+.+.+.++.+ .|||||+|||+|||+|+.+|++++.|||+++||+.++.++|+.|+++++ +
T Consensus 123 ~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 123 EDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence 344577789999999999998886 5999999999999999999999999999999999999999999999998 7
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|.|+|++.||.. -..++|||++-|++|+++|+||++++.+
T Consensus 198 g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 198 GITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred CCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999974 6789999999999999999999988654
No 21
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=2.5e-23 Score=205.21 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 99 DEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred HHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 3455678999999999988877664 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|.|||+++|++. ++.++||++++|++|++++.|+++++.+
T Consensus 174 g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 174 GVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999974 7889999999999999999999987654
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=2.2e-23 Score=208.13 Aligned_cols=115 Identities=30% Similarity=0.414 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.++++.++++.+||++..|... +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~ 188 (343)
T TIGR02314 114 KDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188 (343)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4566778999999999998777654 57999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|||+++|++ ..+.++||++++|++|+++..|+++++.
T Consensus 189 ~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 189 RLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 99999999996 4688999999999999999999988763
No 23
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.4e-23 Score=202.89 Aligned_cols=129 Identities=26% Similarity=0.402 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++.+++++++++.+||. +..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 117 KEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191 (288)
T ss_pred HHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 455667899999999996 355544 45799999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH---HHHHHcCCCCCCCC
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV---KFFAEAGFPCPSRR 137 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~---~~f~~~g~~~~~~~ 137 (437)
++|.|||+++|++. ++.+++|++++|++|++++.|++++.. +.++..|+.+|...
T Consensus 192 ~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 192 QSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred HCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHH
Confidence 88999999999974 688899999999999999999998763 34455677666543
No 24
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=187.29 Aligned_cols=114 Identities=21% Similarity=0.380 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+++++++++|+++.+.|+++++.. .||||||||+.|||+|+.+|+.++||||++|.||.+..++.++++.|++.|
T Consensus 115 ~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 115 ERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred HHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 555678899999999999998765 599999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
..|++|-|..+ |...++||..++++|+++.+|+++++.+
T Consensus 190 iGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 190 IGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred ceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999976 7899999999999999999999998753
No 25
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=200.08 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++|..+++.++|+.+||.+.. .+-+.++..|||||||||.||.+|+.+|++|+.||||++||...+.+++++|+++.+
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 456678999999999998643 234568899999999999999999999999999999999999999999999999998
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.++|++||+.. -+.+++|||++|+.|++|..|+.+++.
T Consensus 202 e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 202 EKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred hcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 7999999999974 699999999999999999999998664
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.7e-23 Score=195.99 Aligned_cols=113 Identities=26% Similarity=0.426 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++..++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 111 EEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567899999999987776655 46999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 186 ~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 186 LGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred cCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 4899999999975 68889999999999999999988754
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=6.3e-23 Score=205.02 Aligned_cols=115 Identities=25% Similarity=0.467 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..+++++ +||||||||++||++|+++|++++|||||+|||+.++.++.+.|++++++
T Consensus 147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3445678899999999988888775 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|+|||+++|++ .++.++||++++|++|++++.|++++..+
T Consensus 222 g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 222 GKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999997 47899999999999999999999998754
No 28
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=6.7e-23 Score=206.29 Aligned_cols=116 Identities=23% Similarity=0.379 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|++++
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 34566778999999999998887765 4699999999999999999999999999999999999999999999998
Q ss_pred hc--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD--GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~--g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 86 79999999997 4789999999999999999999998774
No 29
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-22 Score=198.43 Aligned_cols=115 Identities=23% Similarity=0.408 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ--ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++..++++++++.+||. +..|+. ++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus 116 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 116 EEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 455667899999999996 555554 4579999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++ |+|||+++|++. ++.+++||+++|++|++++.|++++..
T Consensus 191 ~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 191 HKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 875 999999999974 678899999999999999999998764
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.3e-23 Score=205.81 Aligned_cols=116 Identities=22% Similarity=0.337 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++..+... +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34566678999999999998877655 4799999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 75 89999999997 4799999999999999999999998763
No 31
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-22 Score=198.45 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++.+++++++++.+||. +..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~ 192 (290)
T PRK13634 118 EEDAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192 (290)
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 345557899999999996 5556544 5799999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|||+++|++. ++.+.+||+++|++|++++.|++++..
T Consensus 193 ~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 193 KEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 74 899999999975 688999999999999999999988763
No 32
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.89 E-value=1.1e-22 Score=200.89 Aligned_cols=115 Identities=25% Similarity=0.456 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.++|.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 110 ~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 184 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184 (303)
T ss_pred HHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 3445678889999999988877765 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|.|||+++|++. ++.++||++++|++|++++.|+++++.+
T Consensus 185 g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 185 GKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999975 7889999999999999999999987753
No 33
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.9e-22 Score=196.27 Aligned_cols=113 Identities=25% Similarity=0.390 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 113 DEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred HHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 345567899999999987777655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|.|||+++|++. .+.+.+|++++|++|++++.|++++.
T Consensus 188 g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 188 GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999974 67789999999999999999998654
No 34
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.89 E-value=9.9e-23 Score=204.62 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++..|... +.|||||||||+||++|+.+|++++||||++|||..++.++.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 34567789999999999998877655 5799999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 182 ~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 182 RRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 74 89999999997 4799999999999999999999998774
No 35
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.6e-23 Score=190.16 Aligned_cols=115 Identities=21% Similarity=0.375 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.++++.++++.+||.+.. -+.++..||||||||++|||||+.+|++|+||||||.||...+.++++.|.++++ .
T Consensus 116 ~~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 116 KSQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred HHHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 3445699999999997533 2346678999999999999999999999999999999999999999999999998 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+.|.|+++|+. .-+.++|||+++|++|+++..++.+++.+
T Consensus 192 ~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 192 GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred CceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 78999999996 57999999999999999999999998754
No 36
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=8.8e-23 Score=209.88 Aligned_cols=118 Identities=22% Similarity=0.339 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.+|.++++.++|+..||.+.... +.++..|||||||||.||++|+.+|++|++||||++||..++.+|++.||++.+
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR 202 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH
Confidence 56788899999999999887655 668999999999999999999999999999999999999999999999999997
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.|.++|+++|++. -+.+++|||++|++|+++..|+++++.+
T Consensus 203 e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 203 ELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 7999999999985 6899999999999999999999998865
No 37
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.89 E-value=1.4e-22 Score=192.83 Aligned_cols=112 Identities=27% Similarity=0.417 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 193 (236)
T cd03219 119 EARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193 (236)
T ss_pred HHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 44567899999999987776655 4699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 194 ~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 194 ITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999975 68889999999999999999988765
No 38
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.89 E-value=1.5e-24 Score=200.74 Aligned_cols=208 Identities=23% Similarity=0.358 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhhhChHHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHH
Q 013741 225 KQLCILSHRSFLNMLRDMGYY-WLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEH 302 (437)
Q Consensus 225 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~~~~er 302 (437)
+|++.+++|+++..+|||... ...++..++.++++|.+|.++++++++. ++.+.+++......+... +.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988555555 677766666555553333 3336788899
Q ss_pred HHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013741 303 KASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPN 382 (437)
Q Consensus 303 ~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~ 382 (437)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++...+..++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999987 67777777788888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741 383 VLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437 (437)
Q Consensus 383 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf 437 (437)
...+..+.+.+..+++++||.+.|.+.+|++ ++| +.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~-~~~-i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSW-LRW-ISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHH-HHH-HHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999964 889 9999999999999999987
No 39
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.5e-22 Score=197.09 Aligned_cols=115 Identities=20% Similarity=0.381 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++..++++++++.+||. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 138 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 212 (305)
T PRK13651 138 KEEAKKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN 212 (305)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 455667899999999996 5666544 5799999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++|.|||+++|++. .+.+.+||+++|++|++++.|++++..
T Consensus 213 ~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 213 KQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 88999999999964 688999999999999999999998764
No 40
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=1.2e-22 Score=188.94 Aligned_cols=102 Identities=26% Similarity=0.467 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+++++++++++.+||++..+. .++..|||||||||+|||+|+.+|++++.||||..||+.++..+++.+++++++
T Consensus 117 ~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~ 192 (226)
T COG1136 117 RRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER 192 (226)
T ss_pred HHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc
Confidence 567789999999999976652 245679999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
|+|+|++||+| ++...+||++.|.+|+
T Consensus 193 g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 193 GKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 99999999997 5788999999999998
No 41
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.8e-22 Score=196.04 Aligned_cols=116 Identities=25% Similarity=0.469 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 115 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 115 EDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 3455678999999999988776655 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+ |+|||+++|++. ++.+.+|++++|++|++++.|++++..+
T Consensus 190 ~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 190 ELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred hCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 5 899999999975 5778999999999999999999887643
No 42
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.8e-22 Score=202.51 Aligned_cols=116 Identities=21% Similarity=0.378 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||.+..|... +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus 109 ~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 109 PKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 35567789999999999988776554 5799999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|+|+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 184 ~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 184 QQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 74 89999999997 4789999999999999999999998763
No 43
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=2.1e-22 Score=191.06 Aligned_cols=112 Identities=23% Similarity=0.377 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 183 (232)
T cd03218 109 EREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183 (232)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 44567889999999988777655 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 184 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 184 IGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999975 78999999999999999999988765
No 44
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=2e-22 Score=202.37 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.++|.+..|.++ +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 3456678999999999988777655 57999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|+|+++|++ .++..++|++++|++|++++.|+++++.
T Consensus 185 ~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 185 ELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 89999999997 4789999999999999999999998764
No 45
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.2e-22 Score=191.93 Aligned_cols=111 Identities=27% Similarity=0.405 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3467889999999987666654 57999999999999999999999999999999999999999999999987 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 196 ~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 196 ITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 99999999975 68889999999999999999998765
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.7e-22 Score=189.21 Aligned_cols=107 Identities=25% Similarity=0.387 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~ 180 (213)
T cd03259 106 EIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180 (213)
T ss_pred HHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 44567889999999988777665 46999999999999999999999999999999999999999999999987 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
|+|||+++|++. ++.+++|++++|++|+++..|
T Consensus 181 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 181 GITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 899999999974 688899999999999998765
No 47
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4e-22 Score=197.85 Aligned_cols=126 Identities=24% Similarity=0.434 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++..++++++++.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 149 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~ 223 (320)
T PRK13631 149 KSEAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK 223 (320)
T ss_pred HHHHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 344556889999999996 455543 45799999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH---HHHHHcCCCCC
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV---KFFAEAGFPCP 134 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~---~~f~~~g~~~~ 134 (437)
++|+|||+++|++. ++.+.+|++++|++|+++..|++++.. +.++..|...|
T Consensus 224 ~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 224 ANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred HCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 88999999999974 678899999999999999999988653 23344455543
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.1e-22 Score=189.67 Aligned_cols=112 Identities=26% Similarity=0.409 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 106 AERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 3445678999999999887777654 69999999999999999999999999999999999999999999999886
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
|.|+|+++|++. ++.+.+|++++|.+|+++..|++++
T Consensus 181 ~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 181 FGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 899999999975 6888999999999999999988765
No 49
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.9e-22 Score=193.83 Aligned_cols=114 Identities=30% Similarity=0.457 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (271)
T PRK13638 111 AEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185 (271)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 344567889999999988777655 469999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 186 g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 186 GNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 899999999975 678899999999999999999987653
No 50
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.3e-22 Score=201.57 Aligned_cols=115 Identities=28% Similarity=0.390 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 114 KAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3455678899999999988777655 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |+|+|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 189 ~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 189 ELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 899999999975 688899999999999999999988663
No 51
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.3e-22 Score=194.28 Aligned_cols=114 Identities=26% Similarity=0.410 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++..++++++++.+||++..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 4455678999999999988777655 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |+|||+++|++. ++ ..+|++++|++|+++..|++++..
T Consensus 189 ~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 189 DYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred hcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 5 999999999975 45 579999999999999999988654
No 52
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3e-22 Score=196.12 Aligned_cols=115 Identities=26% Similarity=0.370 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++..++++++++.+||+ +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 192 (287)
T PRK13641 118 EDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192 (287)
T ss_pred HHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 345566889999999997 5666655 4699999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++|.|||+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus 193 ~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 193 KAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 78999999999974 688999999999999999999988654
No 53
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=1.7e-22 Score=178.63 Aligned_cols=114 Identities=22% Similarity=0.348 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++.+++|+.++...||..+.+..- ..|||||||||++||.|+++-.|++||||+|.||+.-+.++...+.++++
T Consensus 104 a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 104 AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 455679999999999998877654 47999999999999999999999999999999999999999999999998
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++.|+++++|||+ ++.++.|+++++++||+.+.|+.++..
T Consensus 179 ~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 179 RKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 6899999999996 789999999999999999999988653
No 54
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.6e-22 Score=191.41 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 186 (239)
T cd03296 112 EIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186 (239)
T ss_pred HHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 34467889999999987777655 469999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|||+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 187 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 899999999974 67889999999999999999988765
No 55
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=2e-22 Score=204.87 Aligned_cols=112 Identities=26% Similarity=0.419 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..++.+ +.||||||||+.||++|+++|++|+|||||+|||+.++.++++.|++++++|
T Consensus 115 ~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g 189 (402)
T PRK09536 115 TDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189 (402)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 34568999999999998887765 4699999999999999999999999999999999999999999999999888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.+++||+++|++|++++.|+++++
T Consensus 190 ~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 190 KTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999974 78899999999999999999999874
No 56
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.88 E-value=3.3e-22 Score=191.93 Aligned_cols=112 Identities=28% Similarity=0.400 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+..|+.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 120 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 194 (250)
T PRK11264 120 EATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194 (250)
T ss_pred HHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 34567889999999987766654 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|+|+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus 195 ~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 195 RTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999975 68889999999999999999998765
No 57
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2e-22 Score=186.59 Aligned_cols=116 Identities=28% Similarity=0.420 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.++..++..++|+.+||.+.+|+..|+ ||+|||||+.||++|+++|++|+||||.+||.+..+.++.+.|+++++
T Consensus 123 e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~ 197 (250)
T COG0411 123 EREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197 (250)
T ss_pred HHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh
Confidence 345667899999999999999999985 999999999999999999999999999999999999999999999998
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.|.||+++-|+. .-++++||||++|+.|+++..|+++++.+
T Consensus 198 ~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 198 RGGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 579999999996 57999999999999999999999998753
No 58
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.3e-22 Score=194.12 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 210 (269)
T cd03294 136 EREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 445678899999999887777664 6999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 211 g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 211 QKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 899999999975 688999999999999999999887653
No 59
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=2.6e-22 Score=189.88 Aligned_cols=111 Identities=28% Similarity=0.433 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+||.+..+.... ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +
T Consensus 116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~ 191 (227)
T cd03260 116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-Y 191 (227)
T ss_pred HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-c
Confidence 45678899999999877665431 3579999999999999999999999999999999999999999999999887 9
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 192 tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 192 TIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999975 6888999999999999999998764
No 60
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=3.6e-22 Score=199.04 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++..+++.++++.+||.+..+. + +.+++.|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++++
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999753322 2 356788999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|+|+++|++. .+.+++|++++|++|+++..|+++++.
T Consensus 210 ~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 210 EFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4 899999999975 677899999999999999999998774
No 61
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=3.6e-22 Score=190.54 Aligned_cols=114 Identities=25% Similarity=0.414 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||++..|..+ +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (240)
T PRK09493 111 EEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 (240)
T ss_pred HHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 344567899999999987776655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+|+++|++. ++.+++|++++|++|++++.|+.++..
T Consensus 186 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 186 GMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999975 678889999999999999999987653
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3e-22 Score=202.52 Aligned_cols=115 Identities=25% Similarity=0.408 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||++..+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3455678999999999988777655 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|+|+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 182 ~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 182 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 899999999974 788999999999999999999998764
No 63
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.88 E-value=2.9e-22 Score=191.43 Aligned_cols=112 Identities=27% Similarity=0.391 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.+++++++++.+||.+..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 195 (243)
T TIGR02315 121 EDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED 195 (243)
T ss_pred HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 34567889999999987766654 46999999999999999999999999999999999999999999999976 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 196 ~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 196 GITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 899999999975 67889999999999999999988754
No 64
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=3.2e-22 Score=197.29 Aligned_cols=114 Identities=26% Similarity=0.434 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..|+.++ .||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~- 181 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK- 181 (301)
T ss_pred HHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-
Confidence 4456688999999999988877664 6999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
++|||+++|++. ++.++||++++|++|++++.|+.++..+
T Consensus 182 ~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 182 DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 799999999974 7999999999999999999999998754
No 65
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.88 E-value=4e-22 Score=198.65 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++.+++++++++.+||. +..++ ++..|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++
T Consensus 133 ~~~~~~~~~~~~l~~vgl~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 133 SRQEVKDRVKAMMLKVGLLPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CHHHHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3456677889999999994 33443 55689999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.++ |.|+|+++|++. .+.+++|++++|++|+++..|+.+++.
T Consensus 208 ~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 208 QREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 874 899999999974 688899999999999999999988764
No 66
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=4.5e-22 Score=199.93 Aligned_cols=115 Identities=20% Similarity=0.298 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++..+++.++++.+||++..++.. +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.++++.+
T Consensus 103 ~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 103 EQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177 (363)
T ss_pred HHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999987776655 46999999999999999999999999999999999999999999999986
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|+|||+++|++ .++.+++|++++|++|+++..|++++..
T Consensus 178 ~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 178 TLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 489999999996 4688999999999999999999988764
No 67
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=2.7e-22 Score=190.28 Aligned_cols=110 Identities=31% Similarity=0.412 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 44557889999999988777655 469999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
|+|||+++|++. ++.+.+|++++|++|+++..|+..
T Consensus 165 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 165 RVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCce
Confidence 899999999975 688999999999999999888654
No 68
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=3.5e-22 Score=187.05 Aligned_cols=108 Identities=24% Similarity=0.408 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999887777654 6999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
.|.|||+++|++. ++.+++|++++|++|++++.|
T Consensus 180 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 180 LGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 4899999999974 688899999999999999876
No 69
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.7e-22 Score=191.75 Aligned_cols=114 Identities=27% Similarity=0.451 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..+++.++++.+||.+..++.++ .||||||||+.||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (275)
T PRK13639 112 EEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186 (275)
T ss_pred HHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 3455678999999999887777654 69999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 187 ~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 187 GITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999974 678899999999999999999988764
No 70
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.88 E-value=5e-22 Score=197.79 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 445668899999999988777655 569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999974 789999999999999999999998764
No 71
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.88 E-value=4.5e-22 Score=201.05 Aligned_cols=115 Identities=25% Similarity=0.337 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||++..|... +.|||||||||+||++|+.+|++|+|||||+|||...+..+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4556678999999999998877655 57999999999999999999999999999999999999999999999987
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 489999999997 4789999999999999999999998764
No 72
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.3e-22 Score=193.44 Aligned_cols=114 Identities=28% Similarity=0.434 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567899999999988777665 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. ++.+.+|++++|++|++++.|++++..
T Consensus 187 ~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 187 YGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 899999999975 688899999999999999999998764
No 73
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6e-22 Score=193.92 Aligned_cols=115 Identities=20% Similarity=0.408 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++..++++++++.+||. +..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~ 192 (286)
T PRK13646 118 LDEVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192 (286)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 445667899999999996 5666544 5799999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|||+++|++. ++.+++|++++|++|++++.|++++..
T Consensus 193 ~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 193 TDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6 5899999999975 688899999999999999999988653
No 74
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.3e-22 Score=188.49 Aligned_cols=112 Identities=28% Similarity=0.403 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+..+.++++++.+||.+..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (233)
T cd03258 116 EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190 (233)
T ss_pred HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence 34567889999999987777655 469999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|||+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 191 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 191 GLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 899999999974 68889999999999999999987765
No 75
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3e-22 Score=190.32 Aligned_cols=116 Identities=25% Similarity=0.344 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++.+++.+|+++|+.+.|++.++ .++..|||||||||++||+|+.+|++|+||||+++||..-+.++-+.|+++.
T Consensus 110 ~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~ 184 (345)
T COG1118 110 SEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184 (345)
T ss_pred ChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH
Confidence 45678889999999999987665 4678899999999999999999999999999999999999999999999999
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|++.++|++ .++++++|||++|++|++...|+++++.
T Consensus 185 ~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 185 DRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 84 99999999997 5899999999999999999999999874
No 76
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.7e-22 Score=197.31 Aligned_cols=115 Identities=21% Similarity=0.298 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++.++++.++++.+||.+ ..++ +++.||||||||++||++|+.+|++|++||||+|||..++.++++.|++++
T Consensus 127 ~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 127 AAERREKALAMMAKVGLRPEHYDR-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHHHHHHCCCChHHhcC-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 4456678999999999963 4444 456899999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|+|+++|+.. .+.+++|++++|++|+++..|+.+++.
T Consensus 202 ~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 202 QELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 7 4999999999964 677899999999999999999988764
No 77
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.4e-22 Score=197.97 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.++++.++++.+||.+..+ .-+.++..|||||||||+||++|+.+|++|++||||+|||+.++.++.+.|+++++ .
T Consensus 131 ~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 131 WRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 34568899999999975322 12345678999999999999999999999999999999999999999999999988 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++ ..+.+++|++++|++|+++..|+.+++.
T Consensus 209 g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 89999999996 4688999999999999999999988663
No 78
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.1e-22 Score=197.14 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+..+. -+.++..|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++++
T Consensus 124 ~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 124 KKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566789999999999753211 1245678999999999999999999999999999999999999999999999987
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.|+|+++|+.. .+.+++|++++|++|+++..|+++++.
T Consensus 202 ~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 202 KENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5899999999975 678899999999999999999998764
No 79
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.88 E-value=4.4e-22 Score=187.07 Aligned_cols=108 Identities=29% Similarity=0.552 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..+..++ .||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (218)
T cd03266 111 DELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185 (218)
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 3456788999999999887777654 69999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
|+|+|+++|++. ++.+.+|++++|++|+++..|
T Consensus 186 ~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 186 GKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999974 688899999999999998754
No 80
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.8e-22 Score=186.60 Aligned_cols=110 Identities=26% Similarity=0.368 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 44567899999999988777655 46999999999999999999999999999999999999999999999976 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEeeChh
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAK 120 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~--~G~~v~~G~~~ 120 (437)
|+|||+++|++. ++.+.+|++++|+ +|+++..++.+
T Consensus 182 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 182 GKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 899999999975 6788999999999 79999888753
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=4.4e-22 Score=186.84 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (216)
T TIGR00960 113 RDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR 187 (216)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 345568899999999988777655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
|.|||+++|++. ++.+++|++++|++|++
T Consensus 188 ~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 188 GTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999975 67889999999999974
No 82
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.8e-22 Score=192.41 Aligned_cols=114 Identities=22% Similarity=0.371 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++..++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 184 (274)
T PRK13644 110 PIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 3445678899999999988777655 46999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|.|||+++|++. ++ ..+|++++|++|++++.|++++..
T Consensus 185 ~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 185 KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999986 45 569999999999999999988753
No 83
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.87 E-value=6.9e-22 Score=188.76 Aligned_cols=113 Identities=26% Similarity=0.369 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
..++++++++.+||. +..++.++ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 194 (243)
T TIGR01978 119 FLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPD 194 (243)
T ss_pred HHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 346788999999997 45555442 2499999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|||+++|++. .+... +|++++|++|++++.|++++..
T Consensus 195 ~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 195 RSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred cEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999975 57777 7999999999999999987554
No 84
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.3e-21 Score=190.97 Aligned_cols=114 Identities=24% Similarity=0.375 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++..++++++++.+||.+ ..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 119 EEAEALAREKLALVGISESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 344567889999999973 455544 56999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 194 ~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 194 SGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred CCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8899999999974 688899999999999999999988763
No 85
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=6.9e-22 Score=191.85 Aligned_cols=111 Identities=18% Similarity=0.343 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g 84 (437)
.+++++++++.+||.+..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 120 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 194 (269)
T PRK11831 120 LHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG 194 (269)
T ss_pred HHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 3457888999999988777765 469999999999999999999999999999999999999999999999874 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 195 ~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 195 VTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred cEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999974 68889999999999999999998765
No 86
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.1e-22 Score=182.37 Aligned_cols=129 Identities=26% Similarity=0.394 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++|++.|+.-.|++--..+.. ....+|||||+||++|||+|+.+|+||+||||||.|||.+..+|-+++.+|++
T Consensus 120 ~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~- 197 (253)
T COG1117 120 KELDEIVESSLKKAALWDEVKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK- 197 (253)
T ss_pred HHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-
Confidence 5677899999999998754333332 24457999999999999999999999999999999999999999999999984
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHF 143 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~ 143 (437)
..|||+++|.+ ....+..|+..++..|+++.+|+.+++. ..|.+.-..||+
T Consensus 198 ~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 198 KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 58999999996 4789999999999999999999998662 345555555553
No 87
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=9.3e-22 Score=192.03 Aligned_cols=114 Identities=23% Similarity=0.373 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3455678899999999998877766 46999999999999999999999999999999999999999999999987
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.|||+++|++. ++.. +|++++|++|+++..|++++..
T Consensus 193 ~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 193 KYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred hcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 4999999999986 4555 9999999999999999988764
No 88
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.3e-22 Score=185.74 Aligned_cols=104 Identities=26% Similarity=0.373 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++|.++++++.|+.+||.+..|. +++.|||||||||+|||+|+.+|++|+||||++.||+.++.++.+.|.++.
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 467778899999999999987764 678899999999999999999999999999999999999999999999887
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
+ .++||+++||+.. |...+.|||++|+++
T Consensus 178 ~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 178 EETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 6 6899999999974 788899999999984
No 89
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.2e-22 Score=199.85 Aligned_cols=115 Identities=22% Similarity=0.316 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+..+... ++|||||||||+||++|+.+|++|+|||||+|||...+.++.+.|+++.+
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4566778999999999988776654 57999999999999999999999999999999999999999999999876
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.|+|+++|++. ++..++|++++|++|+++..|+++++.
T Consensus 198 ~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 198 RVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 5899999999974 789999999999999999999998764
No 90
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.8e-22 Score=190.27 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 85 (437)
.+++++.++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 131 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 205 (255)
T PRK11300 131 LDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV 205 (255)
T ss_pred HHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence 357888999999987777665 469999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 206 tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 206 TVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9999999975 68899999999999999999998765
No 91
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.4e-22 Score=188.24 Aligned_cols=113 Identities=24% Similarity=0.452 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 4 DEINDIVEETIIKMGLQA--CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++..++++++++.+||.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 344567899999999985 555544 5799999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++ |+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 183 ~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 183 QELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 74 899999999975 67889999999999999999988765
No 92
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.87 E-value=6.9e-22 Score=186.00 Aligned_cols=111 Identities=32% Similarity=0.491 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C
Confidence 445678899999999887777654 6999999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|+|+++|++. .+.+.+|++++|++|+++..|+++++
T Consensus 183 ~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 183 RSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999985 67788999999999999999987753
No 93
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=8.6e-22 Score=186.78 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCc---ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 6 INDIVEETIIKMGLQ---ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.+++++++++.+||. +..+..+ +.|||||||||+||++++.+|++++|||||+|||..++..+.+.|+++++
T Consensus 99 ~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 99 ARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred HHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 345788999999997 3444444 56999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |+|||+++|++. ++..++|++++|++|+++..|++++..
T Consensus 174 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 174 LFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4 899999999975 688899999999999999999987653
No 94
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=189.11 Aligned_cols=113 Identities=25% Similarity=0.369 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++.++++.++++.+||.+.. +. .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 200 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 34456788999999997653 44 3457999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+|+|+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus 201 ~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 201 EGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 8999999999975 67888999999999999999988765
No 95
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.87 E-value=1.1e-21 Score=188.02 Aligned_cols=112 Identities=28% Similarity=0.430 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 4 DEINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++..++++++++.+||. +..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 115 KELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 44556789999999997 555544 457999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++++ .|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 190 ~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 190 LKKK-YTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHhc-CeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9874 89999999975 68889999999999999999998765
No 96
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.7e-22 Score=187.99 Aligned_cols=113 Identities=20% Similarity=0.365 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..+..+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.+++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 112 EQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred HHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 344567899999999987666554 579999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|.|+|+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 187 g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 187 GLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred CCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999999999974 68899999999999999999998765
No 97
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1e-21 Score=186.48 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
.+++++++++.+||++..++.++ .||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++ .|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999887777664 6999999999999999999999999999999999999999999999987 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|+|+++|++. ++.+.+|++++|++|++++.|+.++..
T Consensus 181 ~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 181 LTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999975 678899999999999999999987654
No 98
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.4e-22 Score=184.54 Aligned_cols=108 Identities=28% Similarity=0.532 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
.+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 103 EEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 344567899999999988777655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 178 ~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 178 GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 899999999975 678889999999999998764
No 99
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=189.85 Aligned_cols=114 Identities=22% Similarity=0.368 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||++..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34556789999999999987777654 6999999999999999999999999999999999999999999999998
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |+|||+++|++. ++. .+|++++|++|++++.|+.++..
T Consensus 189 ~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 189 QKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred cCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 5 899999999976 455 59999999999999999988754
No 100
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2e-21 Score=188.61 Aligned_cols=113 Identities=21% Similarity=0.356 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+|+.+..|+.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (269)
T PRK13648 117 DEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191 (269)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999988777654 569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++. ++.. +|++++|++|++++.|++++..
T Consensus 192 ~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 192 HNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 899999999985 4555 9999999999999999988653
No 101
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.7e-22 Score=187.89 Aligned_cols=112 Identities=20% Similarity=0.298 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 6 INDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
..++++++++.+ ++.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 113 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (237)
T PRK11614 113 FQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG 187 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC
Confidence 345677788887 5766555544 5699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 188 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 188 MTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999974 688999999999999999999988663
No 102
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=9.7e-22 Score=197.96 Aligned_cols=113 Identities=24% Similarity=0.369 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+.+++++++++.+||.+..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 107 ~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 107 ERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred HHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999988777665 469999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++. ++..++|++++|++|+++..|+++++.
T Consensus 182 g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 182 GIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 899999999975 788999999999999999999988764
No 103
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.87 E-value=1.1e-21 Score=185.36 Aligned_cols=110 Identities=27% Similarity=0.471 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+|+++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 90 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 164 (223)
T TIGR03771 90 DFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164 (223)
T ss_pred HHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 34578899999999877766554 6999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+.+|+++++ +|++++.|+.++.
T Consensus 165 tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 165 AILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 9999999975 688999999999 8999999998765
No 104
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=188.89 Aligned_cols=111 Identities=23% Similarity=0.404 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
..++++++++.+||.+..++.+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~ 189 (255)
T PRK11231 115 DNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK 189 (255)
T ss_pred HHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 4457889999999988777655 46999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 190 tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 190 TVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999975 78899999999999999999988765
No 105
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.87 E-value=1.2e-21 Score=197.77 Aligned_cols=115 Identities=22% Similarity=0.340 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||++..|...+ .||||||||+.||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus 138 ~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 138 EAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA 212 (382)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 45566789999999999887776654 6999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |+|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 213 ~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 213 KLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 4 899999999974 788999999999999999999998764
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=8.6e-22 Score=183.44 Aligned_cols=101 Identities=32% Similarity=0.484 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 179 (205)
T cd03226 105 EQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179 (205)
T ss_pred HHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 57889999999988777655 4699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETI 114 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v 114 (437)
|+++|++. ++.+++|++++|++|+++
T Consensus 180 i~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 180 IVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999975 678899999999999874
No 107
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=186.40 Aligned_cols=112 Identities=23% Similarity=0.354 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..+++++.++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~ 191 (242)
T PRK11124 117 QALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG 191 (242)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 34567889999999987776655 4699999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+|+++|++. ++.+++|++++|.+|++++.|+.++.
T Consensus 192 ~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 192 ITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999975 67788999999999999999987653
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.87 E-value=6.6e-22 Score=194.40 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++|++++|+++.+.|+|+|..|.+ +++|||||||||++||+|+++|++++||||.|.||...+.++...|+++.
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh 180 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence 5788999999999999999998875 46799999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+ -|.|+|.+||+. .|+..+.||+++|++|++...|++.++.+
T Consensus 181 ~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 181 ERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 8 589999999996 58999999999999999999999998753
No 109
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.87 E-value=1.2e-21 Score=174.41 Aligned_cols=111 Identities=28% Similarity=0.389 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++|.++|+..||.+.++. .+..|||||+|||+||||++.+|++|+.||||.+||+..+.++++++.++.
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 567889999999999999987764 456899999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
+.|.||++++|+- .-+-.+-.|++.|.+|+++....
T Consensus 185 r~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 185 RLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999994 44566678999999999987654
No 110
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-21 Score=198.62 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||++..++.. +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus 138 ~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~ 212 (400)
T PRK10070 138 AEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212 (400)
T ss_pred HHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 3455678899999999988776655 57999999999999999999999999999999999999999999999986
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|+|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 213 ~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 213 KHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 5899999999974 788999999999999999999987653
No 111
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.87 E-value=8.8e-22 Score=183.75 Aligned_cols=105 Identities=30% Similarity=0.488 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+||.+..++.+ +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 104 KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 357888999999988777655 469999999999999999999999999999999999999999999999888899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+|+++|++. ++.+++|++++|++|++++.|
T Consensus 179 ii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 179 VLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999975 677889999999999998765
No 112
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.5e-21 Score=185.85 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++|+++++.+.|+..||+..++.. +..|||||||||.+||+|+.+|+||++|||+|.|||--+.++.+.|.+|
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 136 VPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 47899999999999999999888764 4679999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+ -++|||.++|+. +|.+++-||+.+|.+|+++..|+++|++.
T Consensus 211 q~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 211 QAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 87 589999999996 58999999999999999999999999863
No 113
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.3e-21 Score=183.52 Aligned_cols=106 Identities=31% Similarity=0.436 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g 84 (437)
.+++++++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (214)
T cd03297 108 DRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182 (214)
T ss_pred HHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3457889999999987666654 469999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+|+|+++|++. ++.+.+|++++|++|+++..|
T Consensus 183 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 183 IPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999974 678899999999999998765
No 114
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1.5e-21 Score=186.48 Aligned_cols=110 Identities=26% Similarity=0.379 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+|+.+..++.+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ ++
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 193 (242)
T TIGR03411 120 EKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KH 193 (242)
T ss_pred HHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CC
Confidence 4567899999999988776655 46999999999999999999999999999999999999999999999976 68
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 194 tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 194 SVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999974 68889999999999999999987754
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.87 E-value=1e-21 Score=184.95 Aligned_cols=111 Identities=20% Similarity=0.312 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 6 INDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
..++++++++.+ ++.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 108 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (222)
T cd03224 108 RKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG 182 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 345677888888 5776666554 4699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 183 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 183 VTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999974 68899999999999999999988765
No 116
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.7e-21 Score=191.03 Aligned_cols=113 Identities=21% Similarity=0.325 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
+..++++++++.++|. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 125 ~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (289)
T PRK13645 125 EAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199 (289)
T ss_pred HHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3446788899999994 5565544 56999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|+|||+++|++. ++.+++|++++|++|++++.|+.++..
T Consensus 200 ~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 200 YKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 4899999999975 688999999999999999999987653
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.87 E-value=1.6e-21 Score=188.84 Aligned_cols=113 Identities=19% Similarity=0.321 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+.+++++++++.+||. +..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 125 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 125 EQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199 (265)
T ss_pred HHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3456789999999995 5566544 469999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. .+.+++|++++|++|++++.|+.++..
T Consensus 200 ~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 200 FGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred cCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 899999999975 678899999999999999999988664
No 118
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=1.2e-21 Score=183.44 Aligned_cols=106 Identities=25% Similarity=0.478 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (213)
T cd03235 108 ADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182 (213)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 34567899999999987777655 4699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
.|+|+++|++. ++.+++|++++|++| +++.|
T Consensus 183 ~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 183 MTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999975 688899999999876 55554
No 119
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=188.79 Aligned_cols=111 Identities=27% Similarity=0.481 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.+++++++++.+||.+..|..++ .||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .
T Consensus 128 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 202 (262)
T PRK09984 128 EQKQRALQALTRVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202 (262)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence 345678999999999887776654 6999999999999999999999999999999999999999999999987 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
|.|||+++|++. .+.+.+|++++|++|++++.|++++
T Consensus 203 g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 203 GITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 899999999974 5788999999999999999998875
No 120
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-21 Score=196.52 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 85 (437)
.++++++++.+||.+..+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 106 VAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred HHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 457899999999988777655 469999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 181 tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 181 PILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred eEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999974 789999999999999999999998764
No 121
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=2.2e-21 Score=184.64 Aligned_cols=112 Identities=28% Similarity=0.466 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 345678899999999887776654 6999999999999999999999999999999999999999999999986 6
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++. ++. .+|++++|++|+++..|++++..
T Consensus 183 ~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 183 GLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 899999999985 454 49999999999999999887664
No 122
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.87 E-value=1.7e-21 Score=184.00 Aligned_cols=108 Identities=29% Similarity=0.365 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 117 KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 3445578889999999888777664 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
|.|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 192 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 192 GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 899999999974 678889999999999998765
No 123
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.7e-21 Score=187.99 Aligned_cols=114 Identities=22% Similarity=0.394 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+..++.. +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 117 RPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 3455678999999999987766654 57999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|||+++|++. .+ ..+|++++|++|+++..|++++..
T Consensus 192 ~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 192 KNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred hcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 4 899999999986 45 579999999999999999988764
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=1.9e-21 Score=187.32 Aligned_cols=111 Identities=23% Similarity=0.438 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
..++++++++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (256)
T TIGR03873 114 DAAVVDRALARTELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188 (256)
T ss_pred HHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 34578899999999877776654 6999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus 189 tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 189 TVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999975 68899999999999999999988765
No 125
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=2.4e-21 Score=186.25 Aligned_cols=112 Identities=22% Similarity=0.304 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+..++++++++.+|+.+..+... +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 122 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 196 (252)
T TIGR03005 122 EAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH 196 (252)
T ss_pred HHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999987766544 579999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|.|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 197 ~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 197 DLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred CcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 899999999975 68889999999999999999987755
No 126
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.86 E-value=2.2e-21 Score=183.45 Aligned_cols=105 Identities=47% Similarity=0.773 Sum_probs=94.5
Q ss_pred HHHHH-HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 8 DIVEE-TIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 8 ~~v~~-~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++ .++.+++.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~t 195 (226)
T cd03234 121 KRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195 (226)
T ss_pred HHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 34555 888899887666554 579999999999999999999999999999999999999999999999888899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+|+++|++..++.+++|++++|++|++++.|
T Consensus 196 iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999866799999999999999998865
No 127
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=182.41 Aligned_cols=107 Identities=28% Similarity=0.490 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 178 (211)
T cd03264 105 KEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE- 178 (211)
T ss_pred HHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence 344567899999999988777655 46999999999999999999999999999999999999999999999986
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+.|+|+++|++. .+.+++|++++|++|+++..|
T Consensus 179 ~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 179 DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 589999999975 577899999999999998765
No 128
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-21 Score=187.37 Aligned_cols=112 Identities=26% Similarity=0.377 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL------TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
.+++++++++.+||.+..++.++ .||||||||++||++|+ .+|++++|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 111 DDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred HHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 44578899999999887776654 69999999999999999 59999999999999999999999999999
Q ss_pred HH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~-~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ ++|.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 186 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 186 LAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 98 57899999999974 688899999999999999999887653
No 129
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=187.94 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
.+++++++++.+||++..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~ 194 (265)
T PRK10253 120 DEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194 (265)
T ss_pred HHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3457889999999987766655 56999999999999999999999999999999999999999999999987 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 195 ~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 195 YTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999975 689999999999999999999987653
No 130
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.6e-21 Score=186.71 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+++++++++.+|+. +..++ .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 126 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 126 DLDGVVENALRSAALWDETSDRLKS-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 3445788899999984 33333 34579999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++ |+|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 201 ~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 201 KK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred hh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 65 799999999974 67889999999999999999998765
No 131
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.5e-21 Score=185.93 Aligned_cols=115 Identities=27% Similarity=0.359 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
..+.++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +++
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~ 196 (250)
T PRK14245 119 IRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDY 196 (250)
T ss_pred HHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCC
Confidence 3457889999999864322111 23456799999999999999999999999999999999999999999999995 479
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|||+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 197 tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 197 TIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred eEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999975 688999999999999999999988764
No 132
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3e-21 Score=183.73 Aligned_cols=114 Identities=29% Similarity=0.405 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
.+..+.++++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 345567888999999988777766 469999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+|+++|++. ++.+.+|++++|++|+++..|+.++..
T Consensus 179 ~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 179 FGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999974 688899999999999999999877553
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.8e-21 Score=182.03 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ .|
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 179 (211)
T cd03298 105 DRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK 179 (211)
T ss_pred HHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4557899999999988777655 46999999999999999999999999999999999999999999999986 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
.|+|+++|++. ++.+++|++++|++|+++..|
T Consensus 180 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 180 MTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 99999999974 688899999999999998754
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=187.72 Aligned_cols=111 Identities=31% Similarity=0.411 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g 84 (437)
.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |
T Consensus 124 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~ 198 (265)
T PRK10575 124 DREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 (265)
T ss_pred HHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999877776654 69999999999999999999999999999999999999999999999874 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus 199 ~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 199 LTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 99999999975 68899999999999999999988765
No 135
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.86 E-value=1.9e-21 Score=183.54 Aligned_cols=107 Identities=30% Similarity=0.452 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||++..|..+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti 177 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV 177 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 46788999999998777655 4699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
|+++|++. ++.+.+|++++|++|++++.|++.
T Consensus 178 ii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 178 ILSSHILS-EVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEEcCCHH-HHHHhcCEEEEEeCCEEEEecChh
Confidence 99999975 688899999999999999999875
No 136
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.2e-21 Score=171.07 Aligned_cols=116 Identities=25% Similarity=0.383 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++.|..++.+.+|...|+.+.+|. ++..|||||+||++|||+|+.+|+++++|||||.||+.-.-++.+.+++|
T Consensus 124 ~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 124 VSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred CCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 3677888899999999999887764 56679999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|++|+|.++++|.. ...-+...+|++|++|.+-..|+++++
T Consensus 199 AeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 199 AEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCChHHH
Confidence 99999999999996 467888999999999999999999976
No 137
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=2.3e-21 Score=181.28 Aligned_cols=102 Identities=32% Similarity=0.548 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 184 (211)
T cd03225 110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184 (211)
T ss_pred HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 34567889999999987766655 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
+|+|+++|++. ++.+++|++++|++|+
T Consensus 185 ~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 185 KTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999975 6888899999999885
No 138
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.86 E-value=2.7e-21 Score=184.16 Aligned_cols=108 Identities=26% Similarity=0.405 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..|+.++ .||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3445678889999999988887664 69999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 203 ~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 203 RGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 899999999975 688999999999999998765
No 139
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.86 E-value=2.2e-21 Score=181.69 Aligned_cols=104 Identities=28% Similarity=0.417 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 185 (214)
T cd03292 111 REIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA 185 (214)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 344567889999999988777655 469999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
|.|+|+++|++. .+.+++|++++|++|++
T Consensus 186 ~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 186 GTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999974 67788999999999974
No 140
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-21 Score=185.22 Aligned_cols=112 Identities=23% Similarity=0.305 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.++++++.++.+++. +..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (254)
T PRK14273 122 KLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196 (254)
T ss_pred HHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 3456788899999873 33444 34679999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ +.|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 197 ~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 197 KE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred hc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 64 789999999975 678899999999999999999988663
No 141
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.86 E-value=3.2e-21 Score=186.94 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+..++++++++.+||. +..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (267)
T PRK15112 124 QREKQIIETLRQVGLLPDHASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198 (267)
T ss_pred HHHHHHHHHHHHcCCChHHHhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4456788999999994 5555544 579999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. ++.+++|++++|++|+++..|+.++..
T Consensus 199 ~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 199 QGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred cCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 899999999975 688899999999999999999877653
No 142
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=2.5e-21 Score=181.39 Aligned_cols=102 Identities=28% Similarity=0.457 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 113 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (214)
T TIGR02673 113 EIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187 (214)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 34567899999999987666655 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
+|+|+++|++. ++.+++|++++|++|+
T Consensus 188 ~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 188 TTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 99999999974 7888999999999885
No 143
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.86 E-value=4.1e-21 Score=184.23 Aligned_cols=112 Identities=26% Similarity=0.366 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT-------QPTVLLLDEPTSGLDSASAFFVIQVL 77 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~-------~p~ll~lDEPtsgLD~~~~~~i~~~l 77 (437)
+..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++++|||||+|||+.++..+.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L 176 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 34567899999999987776655 4699999999999999998 67999999999999999999999999
Q ss_pred HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 78 KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 78 ~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++++++|.|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 177 ~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 177 SELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred HHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999888999999999974 68899999999999999999987755
No 144
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=4.2e-21 Score=185.23 Aligned_cols=112 Identities=23% Similarity=0.383 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+.+++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 126 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (258)
T PRK11701 126 DIRATAGDWLERVEIDAARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200 (258)
T ss_pred HHHHHHHHHHHHcCCChhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 34557889999999974 455544 569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|.|||+++|++. .+.+.+|++++|++|++++.|++++.
T Consensus 201 ~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 201 LGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred cCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 899999999974 67788999999999999999998765
No 145
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.9e-21 Score=181.91 Aligned_cols=109 Identities=25% Similarity=0.339 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++.+++++++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 120 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (233)
T PRK11629 120 AEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194 (233)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344568899999999987776655 46999999999999999999999999999999999999999999999986
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
+|+|||+++|++. ++.. +|++++|++|+++..|+.
T Consensus 195 ~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 195 QGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 5899999999975 4555 589999999999988864
No 146
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=2.6e-21 Score=181.85 Aligned_cols=102 Identities=26% Similarity=0.439 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (218)
T cd03255 116 ERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA 190 (218)
T ss_pred HHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999987776655 46999999999999999999999999999999999999999999999987 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
|+|||+++|++. ++. .+|++++|++|++
T Consensus 191 ~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 191 GTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred CCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 899999999985 454 8999999999974
No 147
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.86 E-value=6.4e-21 Score=183.17 Aligned_cols=111 Identities=27% Similarity=0.400 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.++++++++.+||. +..++..+ .+||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|.
T Consensus 127 ~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 202 (252)
T CHL00131 127 LEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN 202 (252)
T ss_pred HHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 45678899999996 34454442 25999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++. .+... +|++++|++|++++.|+++.+
T Consensus 203 tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 203 SIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 9999999975 45555 899999999999999998854
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.2e-21 Score=183.64 Aligned_cols=117 Identities=23% Similarity=0.311 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..+.. -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~- 194 (250)
T PRK14247 117 KELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK- 194 (250)
T ss_pred HHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 34456788999999986421111 1234467999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+|+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus 195 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 195 DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 799999999975 678899999999999999999988663
No 149
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-21 Score=203.17 Aligned_cols=112 Identities=19% Similarity=0.376 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 121 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 195 (510)
T PRK09700 121 EMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195 (510)
T ss_pred HHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 445688999999999887777664 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. .+.+++|++++|++|++++.|++++.
T Consensus 196 ~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 196 TAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999974 68889999999999999999998754
No 150
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.6e-21 Score=185.67 Aligned_cols=113 Identities=21% Similarity=0.407 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567899999999988777765 469999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++|+|+++|++. ++ ..+|++++|++|+++..|+.++..
T Consensus 192 ~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 192 RKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 589999999986 45 479999999999999999987653
No 151
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-20 Score=184.48 Aligned_cols=113 Identities=22% Similarity=0.314 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567899999999988776654 579999999999999999999999999999999999999999999999885
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++.. +. .+|++++|++|+++..|++++..
T Consensus 190 ~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 190 YQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred cCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999764 54 59999999999999999987653
No 152
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=5.6e-21 Score=183.74 Aligned_cols=112 Identities=22% Similarity=0.372 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 6 INDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
.+++++++++.+|+.+ ..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~ 198 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3467889999999963 555544 56999999999999999999999999999999999999999999999876 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++. ++.+.+|++++|++|+++..|+.++..
T Consensus 199 ~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 199 GLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 899999999974 678889999999999999999887553
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=4.9e-21 Score=179.49 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 85 (437)
+++++++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++ |.
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 180 (213)
T TIGR01277 106 QEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180 (213)
T ss_pred HHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 457889999999987766655 479999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
|+|+++|++. ++.+.+|++++|++|+++..|+
T Consensus 181 tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 181 TLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999974 6778999999999999998875
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=7.1e-21 Score=180.72 Aligned_cols=112 Identities=26% Similarity=0.381 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+..++++++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~ 180 (232)
T cd03300 106 EIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180 (232)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 34557889999999988777655 479999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|||+++|++. ++.+.+|++++|++|++++.|+.++.
T Consensus 181 ~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 181 GITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 899999999974 68899999999999999999987655
No 155
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.4e-21 Score=185.88 Aligned_cols=110 Identities=25% Similarity=0.423 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 119 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~ 193 (272)
T PRK15056 119 DRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK 193 (272)
T ss_pred HHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 34578889999999988777665 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++. ++.+++|+++++ +|++++.|++++.
T Consensus 194 tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 194 TMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999974 688899999877 8999999988765
No 156
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6e-21 Score=183.51 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.++++++.++.+||.+...+.. +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 198 (253)
T PRK14242 121 YLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-R 198 (253)
T ss_pred HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 34567888999999864322212 234567999999999999999999999999999999999999999999999964 7
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 199 ~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 199 YTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred CeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999975 67889999999999999999988755
No 157
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.85 E-value=4.7e-21 Score=179.38 Aligned_cols=103 Identities=28% Similarity=0.421 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 111 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 185 (213)
T cd03262 111 EAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 185 (213)
T ss_pred HHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC
Confidence 44567889999999987776655 4699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
+|+|+++|++. ++.+++|++++|++|++
T Consensus 186 ~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 186 MTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999974 68889999999999974
No 158
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.85 E-value=1.1e-20 Score=181.03 Aligned_cols=119 Identities=28% Similarity=0.387 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++.++.++|. +..++.+. +.||||||||++||++++.+|++|+|||||+|||..++..+.+.|+++++.|+
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~ 196 (248)
T PRK09580 121 QDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR 196 (248)
T ss_pred HHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 45678888999984 34444331 36999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHHHHHHHHcCC
Q 013741 86 IVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAVKFFAEAGF 131 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~ 131 (437)
|||+++|++. .+... +|++++|++|++++.|+.+.+ +.++..++
T Consensus 197 tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 197 SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 9999999975 45555 899999999999999998855 33343333
No 159
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=7.9e-21 Score=196.19 Aligned_cols=116 Identities=23% Similarity=0.314 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 344567888999999988777665 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF 125 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~ 125 (437)
|.|||+++|++. ++.++||++++|++|++++.|+++++.+-
T Consensus 193 G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 193 GKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999974 68889999999999999999999877543
No 160
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=7e-21 Score=183.25 Aligned_cols=110 Identities=21% Similarity=0.334 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 8 DIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
++++++++.+||.+ ..++. ++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 116 ATLTAALEAVGLENAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHHHHHcCCCChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 57888999999976 23443 457999999999999999999999999999999999999999999999987 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus 191 g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 191 ALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 899999999975 677899999999999999999988653
No 161
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.3e-21 Score=183.70 Aligned_cols=111 Identities=24% Similarity=0.367 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 344567899999999987776654 46999999999999999999999999999999999999999999999965
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEeeChh
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAK 120 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~--~G~~v~~G~~~ 120 (437)
+|+|||+++|++. ++.+++|++++|+ +|+++..++.+
T Consensus 178 ~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 178 TGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 6899999999975 7889999999998 59999887654
No 162
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.85 E-value=7.3e-21 Score=181.27 Aligned_cols=113 Identities=23% Similarity=0.336 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+..+.++++++.+++.+..++.. +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~ 180 (237)
T TIGR00968 106 KIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180 (237)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999987777655 469999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+|+++|++. ++.+.+|++++|++|++++.|+.++..
T Consensus 181 ~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 181 HVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 899999999974 688999999999999999999987653
No 163
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.85 E-value=5.7e-21 Score=202.49 Aligned_cols=114 Identities=22% Similarity=0.362 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHcCCccc---ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQAC---AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~---~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++.+++++++++.+||.+. .+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 127 REAARGEILNCLDRVGIRQAAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 34556789999999999752 35544 57999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 80 IALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 80 l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++++ |.|||+++|++. .+.+++|++++|++|++++.|++++.
T Consensus 202 l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 202 LQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9875 899999999975 67889999999999999999988765
No 164
>PRK10908 cell division protein FtsE; Provisional
Probab=99.85 E-value=6.7e-21 Score=179.65 Aligned_cols=105 Identities=29% Similarity=0.370 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..+++++.++.+||.+..++.+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (222)
T PRK10908 112 DDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186 (222)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 344557889999999987766654 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v 114 (437)
|.|+|+++|++. ++.+.+|++++|++|+++
T Consensus 187 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 187 GVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 899999999975 688889999999999974
No 165
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=6e-21 Score=183.94 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 85 (437)
+++++++++.+||.+..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 111 RDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 457889999999987766654 46999999999999999999999999999999999999999999999976 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
|||+++|++. ++.+++|++++|++|++++.|+.+
T Consensus 186 tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 186 TVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999975 678899999999999999988754
No 166
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.3e-21 Score=183.38 Aligned_cols=117 Identities=28% Similarity=0.335 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+++.+...... +..+..||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++
T Consensus 127 ~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 204 (260)
T PRK10744 127 AEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ- 204 (260)
T ss_pred HHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 344567899999999843111111 223457999999999999999999999999999999999999999999999964
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+.|+|+++|++. ++.+++|++++|++|+++..|+.++..
T Consensus 205 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 205 DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 789999999975 678899999999999999999987653
No 167
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.85 E-value=6.4e-21 Score=180.27 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=90.5
Q ss_pred HHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Q 013741 11 EETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV 88 (437)
Q Consensus 11 ~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi 88 (437)
+++++.++|. +..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 126 LLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788999995 4555544 469999999999999999999999999999999999999999999999875 89999
Q ss_pred EEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 89 CSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 89 ~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+++|++. ++.+.+|++++|++|+++..|
T Consensus 201 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999975 677889999999999998764
No 168
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.6e-21 Score=182.26 Aligned_cols=115 Identities=21% Similarity=0.381 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.++.++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 198 (251)
T PRK14244 121 KLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-N 198 (251)
T ss_pred HHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 34456788999999975322222 224467999999999999999999999999999999999999999999999864 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus 199 ~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 199 FTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999975 67889999999999999999988765
No 169
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.8e-21 Score=182.37 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 198 (253)
T PRK14267 121 ELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-E 198 (253)
T ss_pred HHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C
Confidence 34457888999999853211111 234567999999999999999999999999999999999999999999999976 6
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 199 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 199 YTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred CEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 89999999975 688899999999999999999987653
No 170
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.85 E-value=8.7e-21 Score=200.68 Aligned_cols=117 Identities=28% Similarity=0.340 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++.+++++++++.+||++..+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 445678999999999987776655 46999999999999999999999999999999999999999999999976
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFF 126 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f 126 (437)
.|.|||+++|++. .+.+++|++++|++|++++.|++++..+.+
T Consensus 218 ~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 218 SGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred cCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 5899999999975 577899999999999999999988765543
No 171
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=182.58 Aligned_cols=117 Identities=29% Similarity=0.410 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+..+++.++++.+++.+..+... +..+..||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ .
T Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~ 200 (261)
T PRK14258 122 EIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS 200 (261)
T ss_pred HHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 34567889999999854322111 234567999999999999999999999999999999999999999999999976 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeC-----CeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSN-----GETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~-----G~~v~~G~~~~~~ 123 (437)
|+|+|+++|++. ++.+++|++++|++ |++++.|+++++.
T Consensus 201 ~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 201 ELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 899999999974 78899999999999 9999999998763
No 172
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=6.3e-21 Score=200.33 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 113 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 187 (490)
T PRK10938 113 PARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187 (490)
T ss_pred HHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 4678899999999887777665 69999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
||+++|++. .+.+.+|++++|++|+++..|++++.
T Consensus 188 vii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 188 LVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999974 68899999999999999999998765
No 173
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.85 E-value=8e-21 Score=178.87 Aligned_cols=103 Identities=23% Similarity=0.385 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
+..++++++++.+||.+..+..+ +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~ 191 (221)
T TIGR02211 117 EAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191 (221)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999987776655 46999999999999999999999999999999999999999999999987 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v 114 (437)
|.|+|+++|++. .+. .+|++++|++|+++
T Consensus 192 ~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 192 NTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 899999999985 454 47999999999875
No 174
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.6e-21 Score=180.89 Aligned_cols=110 Identities=27% Similarity=0.330 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
.++++++++.+||. +..++. ++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 182 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 34678899999996 455543 457999999999999999999999999999999999999999999999987 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 183 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 183 LTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred CEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999975 68889999999999999999988865
No 175
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.85 E-value=6.8e-21 Score=200.61 Aligned_cols=112 Identities=20% Similarity=0.374 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..|..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 191 (501)
T PRK10762 117 KMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191 (501)
T ss_pred HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence 345678999999999987776665 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 192 ~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 192 RGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999974 68899999999999999999987654
No 176
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.85 E-value=1e-20 Score=183.48 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+..++++++++.+|+. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++
T Consensus 126 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 200 (268)
T PRK10419 126 ERLARASEMLRAVDLDDSVLDKRP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200 (268)
T ss_pred HHHHHHHHHHHHcCCChhHhhCCC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence 3445789999999996 4555544 569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|.|+|+++|++. ++.+++|++++|++|++++.|++++..
T Consensus 201 ~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 201 FGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred cCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 899999999974 688899999999999999999987653
No 177
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.5e-21 Score=200.99 Aligned_cols=112 Identities=17% Similarity=0.303 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+..+..++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 193 (506)
T PRK13549 119 AMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193 (506)
T ss_pred HHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 445678999999999877777664 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 194 ~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 194 IACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999974 68889999999999999999988654
No 178
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=183.86 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHH
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQV 76 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~ 76 (437)
..++++++++.+||.+..++.+ ..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~ 196 (272)
T PRK13547 122 DGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196 (272)
T ss_pred HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 4457889999999987666554 469999999999999999 59999999999999999999999999
Q ss_pred HHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 77 LKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 77 l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|++++++ |.|+|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 197 l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 197 VRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999875 899999999975 68889999999999999999998765
No 179
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=182.17 Aligned_cols=116 Identities=24% Similarity=0.358 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+|+.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 126 ~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 203 (259)
T PRK14274 126 KKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE- 203 (259)
T ss_pred HHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence 344567888999999854211111 234567999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++|+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus 204 ~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 204 KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 789999999975 68889999999999999999998865
No 180
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.9e-21 Score=200.35 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+.+++++++++.+||. +..|..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 380 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 380 AELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred HHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 3446789999999996 56666654 69999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|.|||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 455 g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 455 GVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999974 78899999999999999999987654
No 181
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-20 Score=182.55 Aligned_cols=115 Identities=25% Similarity=0.386 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 135 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~ 212 (267)
T PRK14235 135 ELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-N 212 (267)
T ss_pred HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C
Confidence 34567889999999964211111 223467999999999999999999999999999999999999999999999976 6
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. .+.+++|++++|++|+++..|+.++.
T Consensus 213 ~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 213 YTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred CeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999975 67889999999999999999988765
No 182
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-20 Score=180.21 Aligned_cols=115 Identities=28% Similarity=0.377 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~ 192 (246)
T PRK14269 115 EEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NL 192 (246)
T ss_pred HHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CC
Confidence 4456889999999953221111 224567999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+++|++. ++.+.+|++++|++|+++..|+.++..
T Consensus 193 tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 193 SMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred EEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999974 688899999999999999999987653
No 183
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=7.6e-21 Score=186.10 Aligned_cols=118 Identities=23% Similarity=0.394 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
.|++|++++|.+.|++.||... ..+.++.+.|||||||++||++++.+|++++||||||.||-.-+.+++++|++|
T Consensus 397 ls~~eR~~rv~~aL~EVGLDp~----~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L 472 (534)
T COG4172 397 LSAAERDQRVIEALEEVGLDPA----TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472 (534)
T ss_pred CCHHHHHHHHHHHHHHcCCChh----HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence 3678999999999999999753 345688899999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.+ .|.+-+.++|+. .-+-.+||+|++|.+|++|..|+.+++.
T Consensus 473 Q~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 473 QQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 87 688999999996 4688999999999999999999999774
No 184
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=180.55 Aligned_cols=112 Identities=26% Similarity=0.341 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+++++++++.+||.+ ..+. .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~ 193 (251)
T PRK14270 119 ELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193 (251)
T ss_pred HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 44567888999998842 2333 45679999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ ++|+|+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus 194 ~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 194 KK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred Hh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 76 589999999974 788999999999999999999988763
No 185
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=9e-21 Score=200.02 Aligned_cols=111 Identities=17% Similarity=0.282 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 191 (510)
T PRK15439 117 SMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191 (510)
T ss_pred HHHHHHHHHHHcCCCccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999887777664 6999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 192 tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 192 GIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999974 68889999999999999999998764
No 186
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=2.6e-20 Score=180.17 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..+.++++++.++|.+..+..+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 344456778899999987776655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|.|+|+++|++. ++.+.+|++++|++|+++..|+.++..+
T Consensus 193 g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 193 NKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999964 6788999999999999999999887654
No 187
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=7.9e-21 Score=175.21 Aligned_cols=121 Identities=25% Similarity=0.469 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
|+++|.+++.+.+|+.+++......+| +.||.|++|++.+-.+++++|++++||||+|||||.+...+-+.++++
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l 176 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH
Confidence 578899999999999999988777666 579999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~ 127 (437)
+++|.|||.++|.. ..+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 177 k~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 177 KEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999996 57999999999999999999999999987554
No 188
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.84 E-value=1.4e-20 Score=178.20 Aligned_cols=105 Identities=22% Similarity=0.299 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..+..+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 121 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 195 (228)
T PRK10584 121 RQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE 195 (228)
T ss_pred HHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344568899999999987776655 469999999999999999999999999999999999999999999999774
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (437)
Q Consensus 84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~ 115 (437)
|.|||+++|++. .+ +.+|++++|++|+++.
T Consensus 196 ~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 196 HGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred cCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 899999999986 45 4599999999999864
No 189
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=4.4e-21 Score=189.54 Aligned_cols=114 Identities=27% Similarity=0.406 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++++++|+++++.++|++.++.+ +..|||||+|||++||+|+.+|++|+||||.|.||..-+.++...|+++.+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 456888999999999999877654 467999999999999999999999999999999999999999999999987
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|.|.|.+||+. .|...+.|||++|++|++...|+++++
T Consensus 185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 699999999996 589999999999999999999999987
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=203.42 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++.+++++++++.+||. +..++.+ +.|||||||||+||++|+.+|++|+|||||+|||..++.++.+.|+++++
T Consensus 437 ~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 437 KAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred HHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34557889999999995 4555544 57999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|||+++|++. .+.+++|++++|++|++++.|+++++.
T Consensus 512 ~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 512 DFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 5 899999999974 688999999999999999999988764
No 191
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=9.6e-21 Score=194.88 Aligned_cols=116 Identities=23% Similarity=0.331 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.++++++|+++++..||.+- ..+.++.+||||||||++||++|+.+|+++++|||||.||...+.++.+.|+++.+
T Consensus 402 ~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 402 GAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred hHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence 35677899999999999842 44567889999999999999999999999999999999999999999999999998
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.|.+.++|+. ..+.++||||++|++|++|..||.+++.
T Consensus 478 e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 478 ELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred HhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 599999999996 5789999999999999999999888764
No 192
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2e-20 Score=181.38 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.++|.+..++.. +..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 135 ~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~ 212 (267)
T PRK14237 135 VLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-N 212 (267)
T ss_pred HHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 44567888999999864322222 235568999999999999999999999999999999999999999999999964 7
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 213 ~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 213 YTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred CEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999975 68899999999999999999998865
No 193
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2e-20 Score=179.77 Aligned_cols=114 Identities=23% Similarity=0.325 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+++.+...+.. +..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ ++
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 198 (252)
T PRK14239 121 LDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DY 198 (252)
T ss_pred HHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CC
Confidence 3456788899998753211111 234567999999999999999999999999999999999999999999999975 68
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++. ++.+.+|++++|++|++++.|+.++.
T Consensus 199 tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 199 TMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred eEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999975 68889999999999999999998865
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2e-20 Score=180.53 Aligned_cols=113 Identities=23% Similarity=0.386 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 4 DEINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+++++++++.+||. +..++ .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 119 KDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred HHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 34456788899999984 23333 3457999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~~ 123 (437)
+++ ++|||+++|++. ++.+++|++++|+ +|++++.|++++..
T Consensus 194 ~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 194 LKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred Hhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 965 689999999974 6888999999997 79999999987653
No 195
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-20 Score=179.51 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.++++++.++.+|+.+...... +..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ +
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~ 197 (252)
T PRK14256 120 EADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-K 197 (252)
T ss_pred HHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C
Confidence 34567889999999864211111 124567999999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 198 ~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 198 YTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred CcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999974 68899999999999999999998765
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=1.3e-20 Score=199.63 Aligned_cols=114 Identities=22% Similarity=0.373 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++.+++++++++.+||. +..+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 399 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 399 AQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 34456789999999997 4566655 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ |.|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 474 ~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 474 KHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred hhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 5 899999999974 688899999999999999999887663
No 197
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=197.62 Aligned_cols=112 Identities=16% Similarity=0.267 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+|+.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 184 (491)
T PRK10982 110 KMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184 (491)
T ss_pred HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 345678999999999877776654 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. ++.++||++++|++|+++..|++++.
T Consensus 185 ~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 185 CGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999974 68889999999999999999987654
No 198
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=1.2e-20 Score=178.80 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=96.0
Q ss_pred HHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741 8 DIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (437)
Q Consensus 8 ~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 85 (437)
+.++++++.++ +.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 109 ~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (230)
T TIGR03410 109 KIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183 (230)
T ss_pred HHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence 34577788776 565555544 569999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+++|++++|++|+++..|+.+++
T Consensus 184 tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 184 AILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999975 68889999999999999999998765
No 199
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-20 Score=181.17 Aligned_cols=113 Identities=24% Similarity=0.369 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++.+++.++.+++.+..... -+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|
T Consensus 138 ~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 215 (268)
T PRK14248 138 DEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYS 215 (268)
T ss_pred HHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCE
Confidence 45677888888885211111 1224457999999999999999999999999999999999999999999999965 689
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
||+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus 216 iii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 216 IIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred EEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999974 68889999999999999999998765
No 200
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=198.48 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 3456789999999995 56666654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|.|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 445 g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 445 GLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999974 78899999999999999999987754
No 201
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1.8e-20 Score=162.64 Aligned_cols=114 Identities=25% Similarity=0.393 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++++.+.+..++++.|.|.+.+|. ++-.|||||+|||+|||+|+.+|++|++||||+.||+.-..++++++|+|
T Consensus 113 l~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel 187 (242)
T COG4161 113 LSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187 (242)
T ss_pred CCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence 4677888899999999999998875 45579999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
+..|.|-++++|... ..-+...+|+.|.+|+++..|+.+
T Consensus 188 ~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 188 AETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchh
Confidence 999999999999964 566778999999999999999865
No 202
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=178.91 Aligned_cols=115 Identities=28% Similarity=0.404 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.++.+++.++.+|+.+..+.. .+..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ ++
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 196 (250)
T PRK14262 119 LDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NY 196 (250)
T ss_pred HHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-Cc
Confidence 445678889999986422111 2334568999999999999999999999999999999999999999999999975 68
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 197 tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 197 TIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999975 688899999999999999999988664
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=198.22 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||..++.++++.|++++++|.
T Consensus 373 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 447 (501)
T PRK11288 373 AENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447 (501)
T ss_pred HHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCC
Confidence 45788999999994 66777665 5999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 448 tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 448 AVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999997 478899999999999999999987643
No 204
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.1e-20 Score=178.28 Aligned_cols=115 Identities=27% Similarity=0.434 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+++.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 118 ~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 195 (250)
T PRK14240 118 KLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-D 195 (250)
T ss_pred HHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 44567888899988753211111 224467999999999999999999999999999999999999999999999964 7
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+|+++|++. .+.+.+|++++|++|+++..|+.++.
T Consensus 196 ~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 196 YTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred CeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999974 68889999999999999999988765
No 205
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.9e-20 Score=178.38 Aligned_cols=114 Identities=24% Similarity=0.393 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.++++++.++.+|+.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 195 (249)
T PRK14253 118 LDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NY 195 (249)
T ss_pred HHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 3457788888888754221111 224467999999999999999999999999999999999999999999999976 58
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|||+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus 196 tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 196 TIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred eEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999974 78899999999999999999987755
No 206
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=1.9e-20 Score=218.37 Aligned_cols=119 Identities=28% Similarity=0.443 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+.+|++++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 34556788999999999998888775 5999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~ 127 (437)
+|+|||+|+|++ .++..+|||+++|.+|+++..|+++++.+.|.
T Consensus 2119 ~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2119 EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 899999999996 58999999999999999999999999987664
No 207
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=1.5e-20 Score=198.37 Aligned_cols=109 Identities=21% Similarity=0.310 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||+ +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 380 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 454 (510)
T PRK15439 380 NAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454 (510)
T ss_pred HHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCC
Confidence 45688999999997 66776664 6999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
|||+++|++. ++.++||++++|++|+++..|.+++
T Consensus 455 tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 455 AVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred EEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999974 7889999999999999999987764
No 208
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=2.5e-20 Score=197.21 Aligned_cols=112 Identities=19% Similarity=0.333 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCcc-----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 6 INDIVEETIIKMGLQA-----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
.+++++++++.+||.+ ..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 399 ~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 399 ARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4467889999999975 34444 4579999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++ |.|||+++|++. .+.+++|++++|++|+++..|+++++.
T Consensus 474 ~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 474 REEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 874 899999999975 688999999999999999999987654
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-20 Score=197.59 Aligned_cols=107 Identities=20% Similarity=0.356 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||. +..++.++ .|||||||||.||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 386 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 460 (510)
T PRK09700 386 QRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460 (510)
T ss_pred HHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 35688999999996 66777665 6999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
|||+++|++. ++.+++|++++|++|+++..++.
T Consensus 461 tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 461 VILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 9999999974 68899999999999999988866
No 210
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.84 E-value=1.9e-20 Score=170.94 Aligned_cols=102 Identities=30% Similarity=0.514 Sum_probs=91.2
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Q 013741 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV 88 (437)
Q Consensus 10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi 88 (437)
+.++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |.|+|
T Consensus 78 ~~q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii 152 (180)
T cd03214 78 VPQALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152 (180)
T ss_pred HHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 444788999987666544 569999999999999999999999999999999999999999999999876 89999
Q ss_pred EEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 89 CSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 89 ~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+++|++. ++.+++|++++|++|++++.|
T Consensus 153 i~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 153 MVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999975 677899999999999998754
No 211
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=202.36 Aligned_cols=114 Identities=20% Similarity=0.322 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++.+++++++++.+||.+ ..+. ++..|||||||||.||++|+.+|++|+|||||+|||+.++.++.+.|++
T Consensus 139 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 139 REEAMVEAKRMLDQVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV 213 (623)
T ss_pred HHHHHHHHHHHHHHCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence 3455678999999999953 3444 4457999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 80 IALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 80 l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++++ |.|||+++|++ ..+.+++||+++|++|+++..|+++++
T Consensus 214 l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 214 LQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 9874 89999999996 468899999999999999999998765
No 212
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=177.72 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 6 INDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
..+++++.++.+++. +..++ .++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++
T Consensus 121 ~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 121 LMEVAERSLRGAALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHHHHHHHHHcCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 345667777777764 23333 346799999999999999999999999999999999999999999999997
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ +.|+|+++|++. ++.+.+|++++|++|++++.|++++..
T Consensus 196 ~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 196 K-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred c-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 699999999975 688899999999999999999988663
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.5e-20 Score=181.49 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 6 INDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
.+++++++++.+|+. +..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 155 ~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 155 LEEIVEKSLRKAALWDEVSDRLDK-----NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHHHHHhCCccchhhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 345677888888874 33333 446799999999999999999999999999999999999999999999987
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ ++|||+++|++. ++.+++|++++|++|+++..|+.++..
T Consensus 230 ~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 230 G-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred c-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 6 589999999975 678899999999999999999987653
No 214
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.8e-20 Score=179.91 Aligned_cols=114 Identities=25% Similarity=0.385 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+++.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.
T Consensus 141 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~ 218 (272)
T PRK14236 141 LDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KY 218 (272)
T ss_pred HHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC
Confidence 3456888999999864211111 234567999999999999999999999999999999999999999999999976 68
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus 219 tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 219 TIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred eEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999974 67889999999999999999988765
No 215
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.3e-20 Score=178.52 Aligned_cols=115 Identities=24% Similarity=0.318 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
..++++++++.++|.+..+... +...+.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++++ ++
T Consensus 122 ~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~ 199 (261)
T PRK14263 122 LGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DY 199 (261)
T ss_pred HHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 3467889999999865433222 235568999999999999999999999999999999999999999999999964 78
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe--------CCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLS--------NGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~--------~G~~v~~G~~~~~~ 123 (437)
|+|+++|++. ++.+++|++++|+ +|+++..|+.++..
T Consensus 200 tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 200 TIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred eEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999975 6889999999996 89999999988653
No 216
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=178.45 Aligned_cols=115 Identities=25% Similarity=0.364 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+|+.+..... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~ 199 (259)
T PRK14260 122 DLDEIVESALKGAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-E 199 (259)
T ss_pred HHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 3445788899999884211111 1234567999999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEe-----CCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLS-----NGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~-----~G~~v~~G~~~~~ 122 (437)
+|+|+++|++. ++.+.+|++++|+ +|+++..|++++.
T Consensus 200 ~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 200 LTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 89999999975 7889999999998 4999999999876
No 217
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.7e-20 Score=179.67 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..+++++.++.+||.+..++.. +..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++
T Consensus 134 ~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 211 (276)
T PRK14271 134 KEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211 (276)
T ss_pred HHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence 344456778899999875432222 224567999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus 212 ~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 212 RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 489999999974 688999999999999999999988663
No 218
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4e-20 Score=184.19 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=99.4
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+.+++.++..+|.+..++.++ .....||||||||++||++++.+|+||+|||||+|||+.+...+.+.|+++++ ++|+
T Consensus 200 ~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Ti 277 (329)
T PRK14257 200 KIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSI 277 (329)
T ss_pred HHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 457888999988654444444 35678999999999999999999999999999999999999999999999876 6999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+++|++. .+.+.+|++++|++|+++..|+++++.
T Consensus 278 i~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 278 IIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999974 678889999999999999999999774
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=2.7e-20 Score=196.09 Aligned_cols=111 Identities=16% Similarity=0.291 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+.+++++++++.+||.+.. +..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (500)
T TIGR02633 116 AMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190 (500)
T ss_pred HHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3456789999999997654 3434 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
|.|||+++|++. ++.+.+|++++|++|+++..|++++
T Consensus 191 g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 191 GVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred CCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999974 6888999999999999999998764
No 220
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.83 E-value=3.5e-20 Score=176.42 Aligned_cols=90 Identities=26% Similarity=0.469 Sum_probs=82.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..+|++++|++
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~ 211 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK 211 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999999974 899999999986 45 46999999999
Q ss_pred CeEEEeeChhHHH
Q 013741 111 GETIYFGDAKMAV 123 (437)
Q Consensus 111 G~~v~~G~~~~~~ 123 (437)
|++++.|++++..
T Consensus 212 G~i~~~~~~~~~~ 224 (237)
T cd03252 212 GRIVEQGSHDELL 224 (237)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987654
No 221
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=3.8e-20 Score=177.83 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 86 (437)
+++.++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|
T Consensus 99 ~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 173 (251)
T PRK09544 99 EDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA 173 (251)
T ss_pred HHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 46788999999988777655 469999999999999999999999999999999999999999999999875 899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+++|++. ++.+.+|++++|+ |+++..|++++.
T Consensus 174 iiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 174 VLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred EEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 999999975 6888999999996 479999988765
No 222
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.5e-20 Score=176.64 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++++++.++.++|.+..... .+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|.|
T Consensus 121 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t 198 (251)
T PRK14249 121 DEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYT 198 (251)
T ss_pred HHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCE
Confidence 45677788888875321111 123456799999999999999999999999999999999999999999999995 5899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 199 ilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 199 IAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999974 68889999999999999999998765
No 223
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.6e-20 Score=176.49 Aligned_cols=115 Identities=26% Similarity=0.332 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.++++++.++.+||.+...... +..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ +.
T Consensus 119 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~ 196 (250)
T PRK14266 119 IEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DY 196 (250)
T ss_pred HHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 4567888999999854321112 234567999999999999999999999999999999999999999999999965 78
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+++|++. ++...+|++++|++|++++.|++++..
T Consensus 197 tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 197 TIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred eEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999974 788999999999999999999988663
No 224
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.2e-20 Score=176.78 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+++.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 198 (251)
T PRK14251 121 DQRVEESLKQAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYT 198 (251)
T ss_pred HHHHHHHHHHcCCCcchHHHh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCe
Confidence 457788999999853211111 224467999999999999999999999999999999999999999999999865 689
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus 199 iiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 199 FIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999975 68888999999999999999998765
No 225
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.2e-20 Score=178.72 Aligned_cols=114 Identities=24% Similarity=0.334 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+++....++. -+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus 128 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~t 205 (269)
T PRK14259 128 DELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFT 205 (269)
T ss_pred HHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence 45677888888874211111 1234567999999999999999999999999999999999999999999999965 689
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC-----------CeEEEeeChhHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN-----------GETIYFGDAKMAV 123 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~-----------G~~v~~G~~~~~~ 123 (437)
||+++|++. ++.+++|++++|++ |++++.|+++++.
T Consensus 206 iiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 206 IVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 999999974 78899999999996 6789999998774
No 226
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=3.3e-20 Score=174.54 Aligned_cols=107 Identities=25% Similarity=0.424 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+.+++.++.+++.+..+.... ...+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 456778888999877665431 12346899999999999999999999999999999999999999999999997
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
++ .|||+++|++. .+ +.+|++++|++|++++.|
T Consensus 188 ~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 188 GD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 65 89999999985 44 799999999999998764
No 227
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.8e-20 Score=176.69 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+++++++++.+++.+...+.. +..++.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++ ++
T Consensus 122 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~ 199 (253)
T PRK14261 122 LDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EY 199 (253)
T ss_pred HHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-Cc
Confidence 3457888889888853211111 234567999999999999999999999999999999999999999999999976 58
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus 200 tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 200 TVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred eEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999974 67789999999999999999998765
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.6e-20 Score=176.37 Aligned_cols=117 Identities=29% Similarity=0.428 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+++.+...... +..++.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++
T Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~- 201 (257)
T PRK14246 124 REIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN- 201 (257)
T ss_pred HHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 344567889999999964211111 224567999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+.|+|+++|++. .+.+++|++++|++|+++..|+.++..
T Consensus 202 ~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 202 EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 699999999974 678899999999999999999987654
No 229
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.2e-20 Score=175.52 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++++.+.++.+++....... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus 122 ~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 199 (252)
T PRK14255 122 DEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYT 199 (252)
T ss_pred HHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence 34567778888764211111 1224467999999999999999999999999999999999999999999999976 489
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+++|++. ++.+.+|++++|++|+++..|++.+..
T Consensus 200 ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 200 IILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999975 688899999999999999999888653
No 230
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=5.5e-20 Score=193.71 Aligned_cols=109 Identities=22% Similarity=0.380 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 6 INDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
.+++++++++.+||.+ ..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 379 ~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 453 (500)
T TIGR02633 379 ELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453 (500)
T ss_pred HHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence 3467899999999964 4566554 699999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
.|||+++|++. ++.+++|++++|++|+++..++.+
T Consensus 454 ~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 454 VAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999974 788999999999999999887654
No 231
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=5.6e-20 Score=172.13 Aligned_cols=121 Identities=25% Similarity=0.378 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++.++.+++.+...+.|+|+...+..+ |.||-|||.|+.+|.+|+++|+||||||||=|||-.++..+.+.|++.
T Consensus 128 Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 128 IPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred CCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 467788899999999999998777666 579999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~ 127 (437)
.+ .+.||+.|+|.. +++..+||||+++++|+++|.|+.++..+-|.
T Consensus 203 n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 203 NEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred HHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 87 688999999996 57999999999999999999999998877553
No 232
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.7e-20 Score=177.69 Aligned_cols=113 Identities=23% Similarity=0.358 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++.+.+.++.+++.+-..... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|
T Consensus 141 ~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 218 (271)
T PRK14238 141 DEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYS 218 (271)
T ss_pred HHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCE
Confidence 345677777775432111111 234567999999999999999999999999999999999999999999999976 699
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 219 iiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 219 IIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999974 67889999999999999999998765
No 233
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.5e-20 Score=193.15 Aligned_cols=109 Identities=21% Similarity=0.387 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 190 (501)
T PRK11288 116 LLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190 (501)
T ss_pred HHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 44568899999999987666555 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
.|||+++|++. ++.+++|++++|++|+++..++.
T Consensus 191 ~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 191 RVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999975 68889999999999999887653
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.5e-20 Score=177.33 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++.+++.++.+++.+...... +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t 212 (274)
T PRK14265 135 DELVEDSLRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYT 212 (274)
T ss_pred HHHHHHHHHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCE
Confidence 345677788888742211111 234567999999999999999999999999999999999999999999999975 689
Q ss_pred EEEEecCCchHHHhhcCeEEEEe---------CCeEEEeeChhHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLS---------NGETIYFGDAKMAV 123 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~---------~G~~v~~G~~~~~~ 123 (437)
||+++|++. ++.+++|++++|+ +|+++..|+++++.
T Consensus 213 iii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 213 IIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999974 6889999999998 89999999998763
No 235
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.82 E-value=6e-20 Score=170.49 Aligned_cols=94 Identities=32% Similarity=0.440 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeCC
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSNG 111 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~-~fd~v~~L~~G 111 (437)
+.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ .+|++++|++|
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G 181 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDG 181 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999888899999999985 5666 79999999999
Q ss_pred eEEEeeChhHHHHHHHH
Q 013741 112 ETIYFGDAKMAVKFFAE 128 (437)
Q Consensus 112 ~~v~~G~~~~~~~~f~~ 128 (437)
+++..|+.+ +.+++.+
T Consensus 182 ~i~~~~~~~-~~~~~~~ 197 (200)
T cd03217 182 RIVKSGDKE-LALEIEK 197 (200)
T ss_pred EEEEEccHH-HHhhhcc
Confidence 999999554 5554543
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.82 E-value=7.4e-20 Score=172.34 Aligned_cols=103 Identities=23% Similarity=0.425 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 116 QEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 445568999999999987776655 46999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
.|+|+|+++|++. +.+.+|++++|++|++
T Consensus 191 ~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 191 QGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred cCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 5899999999974 4689999999999986
No 237
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=175.93 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
.++++++++.+++.+..+.. -+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus 125 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t 202 (264)
T PRK14243 125 DELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYT 202 (264)
T ss_pred HHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence 45667778888875321111 1234567999999999999999999999999999999999999999999999976 589
Q ss_pred EEEEecCCchHHHhhcCeEEEEe---------CCeEEEeeChhHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLS---------NGETIYFGDAKMAV 123 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~---------~G~~v~~G~~~~~~ 123 (437)
||+++|++. ++.+++|++++|+ +|+++..|+++++.
T Consensus 203 vi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 203 IIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999974 7899999999998 79999999988763
No 238
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=7.4e-20 Score=213.49 Aligned_cols=116 Identities=26% Similarity=0.375 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||++.+|+.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 1036 ~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~ 1109 (2272)
T TIGR01257 1036 EEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S 1109 (2272)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C
Confidence 4456789999999999988877665 699999999999999999999999999999999999999999999995 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFF 126 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f 126 (437)
|+|||+++|++ .++..++||+++|++|+++..|+++++.+.|
T Consensus 1110 g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1110 GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 89999999997 4788899999999999999999999887755
No 239
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=6.9e-20 Score=173.06 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++++.++|.++|+.+||... .-+.++..+|||||||+.|||+|+.+|+++++|||+|.||...+.++.++|+++.+
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 82 KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 45677899999999997642 23457789999999999999999999999999999999999999999999999998
Q ss_pred -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.|.|.+.++|+.+ .+.+++||+.+|+.|++|..|+.+++.
T Consensus 158 ~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 158 ELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHh
Confidence 6999999999964 688999999999999999999999774
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=179.33 Aligned_cols=113 Identities=24% Similarity=0.414 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.++|.+..++.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ .|
T Consensus 174 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~t 251 (305)
T PRK14264 174 DELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YT 251 (305)
T ss_pred HHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CE
Confidence 467888999998853222222 3345689999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEecCCchHHHhhcCeE-EEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDL-LLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v-~~L~~G~~v~~G~~~~~ 122 (437)
+|+++|++. .+.+++|++ ++|++|+++..|++++.
T Consensus 252 iiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 252 VVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 999999974 678899997 57899999999998765
No 241
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=177.49 Aligned_cols=110 Identities=27% Similarity=0.410 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 6 INDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
..++++++++.+||.+ ..+. .+..||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++
T Consensus 153 ~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 153 IDERVEESLRRAALWDEVKDQLDS-----SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHHHHHHcCCCchhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 3567889999999853 3333 446799999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEeeChhHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKMA 122 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~-~L~~G~~v~~G~~~~~ 122 (437)
++ .|+|+++|++. ++.+++|+++ +|++|+++..|+.++.
T Consensus 228 ~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 228 EE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred cC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 74 89999999974 6788999975 6799999999988765
No 242
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=1.2e-19 Score=172.78 Aligned_cols=91 Identities=31% Similarity=0.437 Sum_probs=83.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|+|+++|++. ++. .+|++++|++
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~ 212 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQN 212 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC
Confidence 456899999999999999999999999999999999999999999999997 7899999999975 454 7999999999
Q ss_pred CeEEEeeChhHHHH
Q 013741 111 GETIYFGDAKMAVK 124 (437)
Q Consensus 111 G~~v~~G~~~~~~~ 124 (437)
|++++.|+.++..+
T Consensus 213 G~i~~~~~~~~~~~ 226 (238)
T cd03249 213 GQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCCHHHHhh
Confidence 99999998876544
No 243
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.1e-19 Score=172.09 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCcccccccc------cCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 9 IVEETIIKMGLQACAETKI------GNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~v------g~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.+++.++.+++.+..+... -+..++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~- 186 (229)
T cd03254 108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM- 186 (229)
T ss_pred HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 4555566666654433221 123457899999999999999999999999999999999999999999999996
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. ++ ..+|++++|++|++++.|+.++..
T Consensus 187 ~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 187 KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 5899999999985 45 459999999999999999876553
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.2e-19 Score=172.47 Aligned_cols=90 Identities=27% Similarity=0.418 Sum_probs=82.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||+++|++. ++.. +|++++|++
T Consensus 135 ~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~ 211 (234)
T cd03251 135 RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLED 211 (234)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecC
Confidence 3567999999999999999999999999999999999999999999999975 899999999985 4554 999999999
Q ss_pred CeEEEeeChhHHH
Q 013741 111 GETIYFGDAKMAV 123 (437)
Q Consensus 111 G~~v~~G~~~~~~ 123 (437)
|+++..|+.++..
T Consensus 212 G~i~~~~~~~~~~ 224 (234)
T cd03251 212 GKIVERGTHEELL 224 (234)
T ss_pred CeEeeeCCHHHHH
Confidence 9999999887654
No 245
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=1e-19 Score=195.38 Aligned_cols=113 Identities=25% Similarity=0.409 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.++++++..++.+ -.||.+|+. ...||||||||++|||+++++|++|+||||||+||+.+..++.+.|+++
T Consensus 453 eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 45666666666543 347888864 4579999999999999999999999999999999999999999999988
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +++|+|+++|+++ ..+.+|++++|++|+++..|+.++..+
T Consensus 532 ~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 532 S-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred h-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 5 5799999999984 456799999999999999999887753
No 246
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=1.9e-19 Score=170.40 Aligned_cols=100 Identities=23% Similarity=0.334 Sum_probs=88.8
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 11 EETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 11 ~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
.+.++.+||.+ ..+.. +..||||||||++||++|+.+| ++++|||||+|||+.++.++.+.|++++++|.|+
T Consensus 118 ~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 46788999975 34444 4579999999999999999998 5999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEE------eCCeEEEee
Q 013741 88 VCSIHQPSSHLFYLFDDLLLL------SNGETIYFG 117 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G 117 (437)
|+++|++. ++ +.+|++++| ++|++++.|
T Consensus 193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999985 44 689999999 899999876
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=1.4e-19 Score=175.84 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+.+.+.++.+||.+..+...+. +..+.||||||||+++|++++.+|+|++|||||+|||+.+...+.+.|+++.
T Consensus 106 ~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 106 EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 4567788899998765554432 1335699999999999999999999999999999999999999999999875
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+++|||+++|++. .+. .+||+++|++|++++.|+++++..
T Consensus 186 -~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 186 -ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred -CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 4899999999984 555 499999999999999999998754
No 248
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=190.73 Aligned_cols=109 Identities=28% Similarity=0.411 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
.+++++++++.+++. +..++.+ ..|||||||||.||++++.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus 367 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~ 441 (491)
T PRK10982 367 MKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD 441 (491)
T ss_pred HHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC
Confidence 345788899999995 4456555 4699999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
.|||+++|++. ++.+++|++++|++|+++..++.+
T Consensus 442 ~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 442 KGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999974 688999999999999999877653
No 249
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.1e-19 Score=167.58 Aligned_cols=84 Identities=50% Similarity=0.944 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-Ce
Q 013741 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN-GE 112 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~-G~ 112 (437)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++ |+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 69999999999999999999999999999999999999999999999888999999999986457888999999998 99
Q ss_pred EEEee
Q 013741 113 TIYFG 117 (437)
Q Consensus 113 ~v~~G 117 (437)
+++.|
T Consensus 188 i~~~g 192 (192)
T cd03232 188 TVYFG 192 (192)
T ss_pred EEeCC
Confidence 99876
No 250
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.81 E-value=1.7e-19 Score=167.87 Aligned_cols=98 Identities=29% Similarity=0.459 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 183 (206)
T TIGR03608 109 KEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183 (206)
T ss_pred HHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc
Confidence 344567899999999988777765 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
|.|+|+++|++. ..+.+|++++|
T Consensus 184 ~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 184 GKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999985 34689999875
No 251
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.81 E-value=1.5e-19 Score=167.09 Aligned_cols=84 Identities=60% Similarity=1.043 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
.||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++|++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 69999999999999999999999999999999999999999999999878999999999987678889999999999999
Q ss_pred EEee
Q 013741 114 IYFG 117 (437)
Q Consensus 114 v~~G 117 (437)
++.|
T Consensus 191 ~~~~ 194 (194)
T cd03213 191 IYFG 194 (194)
T ss_pred EecC
Confidence 8765
No 252
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.5e-20 Score=171.69 Aligned_cols=112 Identities=22% Similarity=0.344 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 85 (437)
....+++.+.||++|..+. ++..|||||||||+|||+|+++|++|+||||.+.||-....+++-.|++|+++ ..
T Consensus 106 ~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 106 RAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 3467889999999998876 45679999999999999999999999999999999999999999999999985 66
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.|+-++|.+ .|+.+++|+|++|.+|++...|+.+++.+
T Consensus 181 PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 181 PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 899999996 68999999999999999999999997753
No 253
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=2.8e-19 Score=171.20 Aligned_cols=107 Identities=19% Similarity=0.316 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV 87 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv 87 (437)
.++++++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus 95 ~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 169 (246)
T cd03237 95 FKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169 (246)
T ss_pred HHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 46789999999877776554 6999999999999999999999999999999999999999999999987 58999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEE--EeeChhH
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETI--YFGDAKM 121 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v--~~G~~~~ 121 (437)
|+++|++. .+..++|++++|+++..+ ..+++.+
T Consensus 170 iivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 170 FVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred EEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999974 678899999999765433 3344444
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.3e-19 Score=172.66 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++++++.++.+++.+...+.. +.....||||||||+.||++|+.+|++++|||||+|||..++..+.+.|+++++ +.|
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~t 212 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVT 212 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence 456788888888742111111 223457999999999999999999999999999999999999999999999976 689
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus 213 iiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 213 ILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred EEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999997 468889999999999999999998765
No 255
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=192.66 Aligned_cols=113 Identities=25% Similarity=0.315 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..|+.+ -.||.+|+. .+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 456777777777543 357888863 467999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+.+ ++|+|+++|+++ ..+.||+|++|++|+++..|+.++..
T Consensus 526 ~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 526 LQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 754 699999999984 57789999999999999999988775
No 256
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.5e-19 Score=167.53 Aligned_cols=109 Identities=26% Similarity=0.402 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..+++..+++.+|+++.+|...+ .||-||||||-|||||+.+|.+|+||||++|||...+.++.+.|.+++..
T Consensus 146 ~~~~~~a~~lle~~g~~~la~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 146 AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHHHHHHHcchhhhccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 4566789999999999999998886 59999999999999999999999999999999999999999999999985
Q ss_pred --CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 84 --GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 84 --g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
+.++|+++|++ .++-..|+++++|++|++++.|.
T Consensus 221 ~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 221 PGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 78999999997 57999999999999999999874
No 257
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.6e-19 Score=162.16 Aligned_cols=113 Identities=26% Similarity=0.381 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLK 78 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~ 78 (437)
|..+.+++.|...++.+.+...+ +.|||||||||.+||.|+. ++++||||||||.||..-+..++++.+
T Consensus 111 e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 111 EDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred hhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 45567899999999998887655 4799999999999999975 455899999999999999999999999
Q ss_pred HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++++|..|+++.|+.+ -...++||+++|++||++..|+++++.
T Consensus 186 ~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 186 QLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 99999999999999986 467889999999999999999999875
No 258
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.1e-19 Score=167.11 Aligned_cols=89 Identities=37% Similarity=0.636 Sum_probs=80.7
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEE
Q 013741 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLL 107 (437)
Q Consensus 29 ~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~ 107 (437)
+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 4455689999999999999999999999999999999999999999999999875 678888888766788999999999
Q ss_pred EeCCeEEEee
Q 013741 108 LSNGETIYFG 117 (437)
Q Consensus 108 L~~G~~v~~G 117 (437)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
No 259
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.80 E-value=2.3e-19 Score=195.89 Aligned_cols=111 Identities=25% Similarity=0.303 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+.++++..|+.+. .||.+|+ ....||||||||++|||+++++|++|+||||||+||+.+..++.+.|++
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 3456777887777643 4677875 3467999999999999999999999999999999999999999999988
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ ++|+|+++|+++ ..+.+|++++|++|+++..|+.+++.
T Consensus 634 ~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 634 L---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred h---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 6 589999999984 45679999999999999999988775
No 260
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.80 E-value=3.7e-19 Score=166.82 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=94.9
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013741 12 ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91 (437)
Q Consensus 12 ~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~ 91 (437)
.+.+.++|+...|+.++ .+|||||||+++|++++.+|++++|||||+++|+.++..+.+.+.+..+ ++++|+++
T Consensus 87 ~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs 160 (213)
T PRK15177 87 FCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT 160 (213)
T ss_pred HHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence 34456778777776664 6999999999999999999999999999999999999999998865443 46899999
Q ss_pred cCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHH
Q 013741 92 HQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAE 128 (437)
Q Consensus 92 hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~ 128 (437)
|++. .+..++|++++|++|++++.|+.++..++++.
T Consensus 161 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 161 HNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred CCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 9975 67889999999999999999999998877654
No 261
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.80 E-value=2.2e-19 Score=175.85 Aligned_cols=120 Identities=18% Similarity=0.315 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++++.++++-++|+..|+.+-.... +.++..|||||||||.||++|+.+|++|+.||||+.||-.-+.+|.++||+|
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L 203 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL 203 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence 45677888999999999998765432 4588999999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.+ .|..++.++|+.+ -+-+++|||.+|.+|+++..|+.+++.
T Consensus 204 q~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 204 QAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 87 6999999999974 577888999999999999999988664
No 262
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.1e-19 Score=182.08 Aligned_cols=114 Identities=27% Similarity=0.425 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+.++++..||++.. ||.+|+ ..+.||||||||++|||.|++|.++++|||||.|||+.+..++++.|.+
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 35677788888887644 445654 5678999999999999999999999999999999999999999999988
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
-++ |+|+|+++|+... .+.||||++|++|+++..|..++...
T Consensus 520 ~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 520 HAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred Hhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 554 8999999999753 56799999999999999999987754
No 263
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.80 E-value=3.2e-19 Score=191.66 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..|+.+ -.||.+|. ....||||||||++|||+|+.+|++++||||||+||+.+...+.+.|++
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 356788888888764 34677765 4467999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++ ++|+|+++|+++ ....+|++++|++|+++..|+.++..
T Consensus 522 ~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 522 VRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 865 599999999984 56679999999999999999999875
No 264
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=187.78 Aligned_cols=112 Identities=25% Similarity=0.348 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.++++.++++.+||.+..|+..+ .||||||||+.||++|+.+|++++|||||+|||..++..+.+.|++++++
T Consensus 119 ~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~ 193 (648)
T PRK10535 119 KQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193 (648)
T ss_pred HHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4556688999999999987777654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|+|+++|++. .+ +.+|++++|++|++++.|+.++.
T Consensus 194 g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 194 GHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred CCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 999999999975 34 57999999999999999988754
No 265
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=3.3e-19 Score=189.67 Aligned_cols=98 Identities=29% Similarity=0.510 Sum_probs=88.3
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
.||.+|. ..+.||||||||++|||+++++|++++|||||+|||+.++.++.+.|++++.+|+|+|+++|+++ ..+.+
T Consensus 444 l~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~ 520 (544)
T TIGR01842 444 YDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCV 520 (544)
T ss_pred cccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhC
Confidence 3566664 45789999999999999999999999999999999999999999999998777899999999985 45779
Q ss_pred CeEEEEeCCeEEEeeChhHHH
Q 013741 103 DDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 103 d~v~~L~~G~~v~~G~~~~~~ 123 (437)
|++++|++|+++..|+.++..
T Consensus 521 d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 521 DKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred CEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999987664
No 266
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=3.5e-19 Score=190.51 Aligned_cols=114 Identities=28% Similarity=0.480 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++.+.+.++..++.+. .||.+|+ ..+.||||||||++|||+++++|++++|||||++||+.+...+.+.|+++
T Consensus 443 ~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 443 DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4578888999998765 4677775 35679999999999999999999999999999999999999999999998
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +++|+|+++|+++. ...+|++++|++|+++..|+.++..+
T Consensus 522 ~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 522 A-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred c-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 6 47999999999853 45699999999999999999887653
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.9e-19 Score=168.36 Aligned_cols=90 Identities=30% Similarity=0.458 Sum_probs=82.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|+|+++|++. .+. .+|++++|++
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~ 210 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKD 210 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEEC
Confidence 3568999999999999999999999999999999999999999999999987 899999999975 454 4999999999
Q ss_pred CeEEEeeChhHHH
Q 013741 111 GETIYFGDAKMAV 123 (437)
Q Consensus 111 G~~v~~G~~~~~~ 123 (437)
|+++..|+.++..
T Consensus 211 g~i~~~~~~~~~~ 223 (236)
T cd03253 211 GRIVERGTHEELL 223 (236)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999877553
No 268
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=6.5e-19 Score=169.30 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQ---PTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~---p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+++.+.++.+||.+ ..+..+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~ 221 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221 (261)
T ss_pred HHHHHHHHHcCCchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 46678899999986 345444 57999999999999999996 7999999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeCh
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDA 119 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~ 119 (437)
|.|+|+++|++. .+ +.+|+++.| ++|++++.|++
T Consensus 222 g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 222 GNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999975 34 579999999 79999999974
No 269
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.79 E-value=4.3e-19 Score=189.69 Aligned_cols=101 Identities=28% Similarity=0.437 Sum_probs=90.9
Q ss_pred cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741 20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (437)
Q Consensus 20 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~ 99 (437)
.+-.||.+| +....||||||||++|||+++++|++|+||||||.||+.+...+.+.++++. +++|++++.|.++ .+.
T Consensus 452 p~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~ 528 (567)
T COG1132 452 PDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIK 528 (567)
T ss_pred cccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHH
Confidence 335789998 4556799999999999999999999999999999999999999999999887 5689999999985 455
Q ss_pred hhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 100 YLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 100 ~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+ +|++++|++|+++..|+.+++.+
T Consensus 529 ~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 529 N-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred h-CCEEEEEECCEEEEecCHHHHHH
Confidence 5 99999999999999999998865
No 270
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.79 E-value=4.4e-19 Score=159.42 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v 114 (437)
||||||||+++|++++.+|++++|||||+|||..++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|+++
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVV 161 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999974 678889999999999987
Q ss_pred E
Q 013741 115 Y 115 (437)
Q Consensus 115 ~ 115 (437)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 5
No 271
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=5e-19 Score=170.28 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.++.++++++.+||.+..+..+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 115 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~ 189 (255)
T cd03236 115 DERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189 (255)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 33467889999999987766654 4699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
+|+|+++|++. .+.+++|++++|+ |++.+.|
T Consensus 190 ~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 190 NYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999974 6777899999995 5565544
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=7.1e-19 Score=169.61 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=82.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ ++.|+|+++|++. .+.. +|++++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEEC
Confidence 456899999999999999999999999999999999999999999999975 4899999999986 4554 999999999
Q ss_pred CeEEEeeChhHHH
Q 013741 111 GETIYFGDAKMAV 123 (437)
Q Consensus 111 G~~v~~G~~~~~~ 123 (437)
|+++..|++++..
T Consensus 230 G~i~~~g~~~~~~ 242 (257)
T cd03288 230 GILVECDTPENLL 242 (257)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987664
No 273
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=7.7e-19 Score=159.42 Aligned_cols=98 Identities=26% Similarity=0.364 Sum_probs=84.3
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 11 EETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQ--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 11 ~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~--p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
.+.++.++|.. ..+.. ++.||||||||++||++++.+ |++++|||||+|||..++..+.+.|++++++|+||
T Consensus 68 ~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv 142 (176)
T cd03238 68 LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142 (176)
T ss_pred HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 35788899875 34444 457999999999999999999 99999999999999999999999999998789999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~ 115 (437)
|+++|++. .+ +.+|++++|.+|+..+
T Consensus 143 IivSH~~~-~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 143 ILIEHNLD-VL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred EEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence 99999975 44 6799999997655433
No 274
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.79 E-value=5.1e-19 Score=193.90 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++++.++++..|+.+ -.||.+|+ ...+||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 345667777777654 34677775 3568999999999999999999999999999999999999999999986
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.++|+|+++|+++ ....+|++++|++|+++..|+.+++.+
T Consensus 661 ---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 661 ---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 4799999999985 456699999999999999999998764
No 275
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.79 E-value=5.7e-19 Score=193.07 Aligned_cols=114 Identities=26% Similarity=0.440 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++++.++++..|+.+ -.||.+|+ ....||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 345666777766643 35778875 3567999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+.+ ++|+|+++|+++ ..+.+|++++|++|+++..|+.++..+
T Consensus 647 ~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 647 WLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 864 799999999985 457899999999999999999888754
No 276
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-18 Score=159.66 Aligned_cols=122 Identities=30% Similarity=0.429 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+..+++++.++.+++.+ .++..+. .|+|||||||..|...++.+|++.+||||-||||..+-..+.+.+.+++..
T Consensus 118 ~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 118 EFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred HHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 55678999999999987 5665554 489999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCchHHHhhc--CeEEEEeCCeEEEeeChhHHHHHHHHcCCCC
Q 013741 84 GRIVVCSIHQPSSHLFYLF--DDLLLLSNGETIYFGDAKMAVKFFAEAGFPC 133 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~f--d~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~ 133 (437)
|++++++||.. .+.+.- |+|.+|.+||++..|.+ ++.+++++.||.|
T Consensus 194 ~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 194 GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999995 577777 99999999999999999 7888999999865
No 277
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.79 E-value=5.9e-19 Score=188.77 Aligned_cols=113 Identities=26% Similarity=0.358 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..||.+ -.||.+|+. .+.||||||||++|||+++++|++++||||||+||..+...+.+.|++
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 456777888888754 356778754 567999999999999999999999999999999999999999999998
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ +++|+|+++|+++ ..+.+|++++|++|+++..|+.++..
T Consensus 515 ~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 515 LM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred Hh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 75 4699999999984 67889999999999999999988764
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=6.9e-19 Score=165.69 Aligned_cols=107 Identities=19% Similarity=0.346 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++.+.++.+++.+..+. .. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 107 EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 356667777887665432 11 2356789999999999999999999999999999999999999999999998
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
++ +.|+|+++|++. ++. .+|++++|++|+++..|+
T Consensus 186 ~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 186 FK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred cC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 65 689999999975 454 499999999999998876
No 279
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.1e-19 Score=181.11 Aligned_cols=113 Identities=27% Similarity=0.411 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++.+.++++.-||.+. .|+.+|+ ..++|||||+|||++||+|+.+++++++||||++||..+...+.+.|.++
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 4567777777777654 3566664 56789999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++ +|+++++|++. ...-+|+|++|++|+++..|..+++.
T Consensus 503 ~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 503 AKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHh
Confidence 886 99999999974 45568999999999999999998874
No 280
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.7e-19 Score=160.27 Aligned_cols=115 Identities=23% Similarity=0.395 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
+|.++.+++.++.++|++..|..+ ..||||||||.-||+.++.+.+.++||||.++||-.-+.++|+.||++++
T Consensus 110 ~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e 184 (252)
T COG4604 110 KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184 (252)
T ss_pred hHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH
Confidence 456789999999999999888765 57999999999999999999999999999999999999999999999998
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
-|+|||+++|+.+ ....+.|.++-|++|+++..|+++++.+
T Consensus 185 l~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 185 LGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred hCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 5999999999975 6778899999999999999999998753
No 281
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=5.6e-19 Score=154.90 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
.+-.+...+.|+.+||.+..+. ++..|||||+|||+|||+++..|++||-||||.+||..+..+|.++|-.+.+
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre 195 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195 (228)
T ss_pred ccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence 3445678899999999977654 5678999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~ 115 (437)
.|.|.|+++|+|. +..-|||.+-|..|+++.
T Consensus 196 ~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 196 RGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 6999999999985 678899999999999864
No 282
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.79 E-value=8.3e-19 Score=192.19 Aligned_cols=112 Identities=23% Similarity=0.350 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.++++..|+.+ -.||.+|+ ...+||||||||++|||+++++|++|+||||||+||+.+...+.+.|+++
T Consensus 579 ~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 579 DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 45667777766643 34788875 45679999999999999999999999999999999999999999999985
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+|+|+|+++|+++ ..+.+|++++|++|+++..|+.++..+
T Consensus 658 --~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 658 --QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred --cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 5799999999985 467899999999999999999887754
No 283
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.78 E-value=3.8e-19 Score=191.58 Aligned_cols=101 Identities=29% Similarity=0.457 Sum_probs=91.0
Q ss_pred cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741 20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (437)
Q Consensus 20 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~ 99 (437)
-.-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+...+.+.|+++.. |+|+|+++|.++ ..
T Consensus 596 P~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti 671 (709)
T COG2274 596 PMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TI 671 (709)
T ss_pred cccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--Hh
Confidence 3445677874 5568999999999999999999999999999999999999999999999765 699999999975 67
Q ss_pred hhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 100 YLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 100 ~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+.+||+++|++|+++..|+.++..+
T Consensus 672 ~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 672 RSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hhccEEEEccCCceeccCCHHHHHH
Confidence 8899999999999999999998865
No 284
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.78 E-value=1e-18 Score=191.01 Aligned_cols=113 Identities=24% Similarity=0.401 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.+.++..|+.+ -.||.+|+ ..++||||||||++|||+|+++|++++|||||+|||+.+..++.+.|+++
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 45556666666543 35777775 35689999999999999999999999999999999999999999999998
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +++|+|+++|+++ ....+|++++|++|+++..|+.++..+
T Consensus 640 ~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 640 C-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred h-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 5 5799999999985 345699999999999999999887653
No 285
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=9.6e-19 Score=161.02 Aligned_cols=109 Identities=24% Similarity=0.397 Sum_probs=98.3
Q ss_pred HHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEE
Q 013741 10 VEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV 87 (437)
Q Consensus 10 v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tv 87 (437)
++++.+.+- |.+.++++.|+ |||||||.++|||+|+++|++|+|||||.||-|.-..+|.+.+++++++ |.||
T Consensus 116 ~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 116 LEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred HHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence 788888885 88888888875 9999999999999999999999999999999999999999999999975 6677
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+++-+. -....++.||.++|.+|++++.|+.+++.+
T Consensus 191 lLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 191 LLVEQN-ARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 777655 567889999999999999999999987753
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=6.9e-19 Score=184.95 Aligned_cols=106 Identities=19% Similarity=0.365 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 378 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~ 452 (490)
T PRK10938 378 QKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE 452 (490)
T ss_pred HHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 457899999999987 6666654 6999999999999999999999999999999999999999999999988764
Q ss_pred -EEEEEecCCchHHHh-hcCeEEEEeCCeEEEeeC
Q 013741 86 -IVVCSIHQPSSHLFY-LFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 86 -tvi~t~hqp~~~i~~-~fd~v~~L~~G~~v~~G~ 118 (437)
|||+++|++. ++.+ ++|++++|++|+++..-.
T Consensus 453 ~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 453 TQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred cEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence 6999999974 5666 589999999999887643
No 287
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.78 E-value=9.7e-19 Score=187.80 Aligned_cols=113 Identities=27% Similarity=0.390 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+.+.++..|+.+ -.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus 438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 345666777766553 34677765 3567999999999999999999999999999999999999999999998
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+. +++|+|+++|+++ ..+.+|++++|++|+++..|+.++..
T Consensus 517 ~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 517 LM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred Hh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 75 4799999999984 56789999999999999999987764
No 288
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.78 E-value=9.1e-19 Score=162.67 Aligned_cols=96 Identities=26% Similarity=0.385 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 177 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177 (201)
T ss_pred HHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 457889999999987776655 469999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEE
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L 108 (437)
+|+++|++. ++...+|+++++
T Consensus 178 iii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 178 VVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EEEEecCch-hhhhccceeEec
Confidence 999999975 577789999887
No 289
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=7.2e-19 Score=193.49 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=92.3
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741 18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (437)
Q Consensus 18 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~ 97 (437)
.|.+-.||.+|+..+. ||||||||++|||+|+.||+||+||||||+||+.+...+.+.|.+.+ +|+|.|++.|+.+ .
T Consensus 474 ~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-t 550 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-T 550 (1228)
T ss_pred hhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-h
Confidence 3566778999986555 99999999999999999999999999999999999999999998754 5899999999975 5
Q ss_pred HHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 98 LFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 98 i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+-+ .|+++++++|+++..|+.+|+.+
T Consensus 551 Irn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 551 IRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred hhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 666 99999999999999999998865
No 290
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.78 E-value=9.7e-19 Score=160.93 Aligned_cols=87 Identities=36% Similarity=0.539 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 176 (190)
T TIGR01166 102 AEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176 (190)
T ss_pred HHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 344567899999999988777655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCc
Q 013741 84 GRIVVCSIHQPS 95 (437)
Q Consensus 84 g~tvi~t~hqp~ 95 (437)
|+|||+++|++.
T Consensus 177 ~~tili~sH~~~ 188 (190)
T TIGR01166 177 GMTVVISTHDVD 188 (190)
T ss_pred CCEEEEEeeccc
Confidence 999999999974
No 291
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=6.4e-19 Score=161.13 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+++|++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999999999999878899999999974 78899999999999974
No 292
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=7.9e-19 Score=159.24 Aligned_cols=78 Identities=35% Similarity=0.545 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999888899999999975 67889999999999874
No 293
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.78 E-value=1.6e-18 Score=185.90 Aligned_cols=98 Identities=29% Similarity=0.393 Sum_probs=86.7
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
.||.+|+ ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. +++|+|+++|+++ .+ +.+
T Consensus 461 ~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~ 536 (585)
T TIGR01192 461 YDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNA 536 (585)
T ss_pred ccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcC
Confidence 3566664 456799999999999999999999999999999999999999999999875 5899999999984 34 669
Q ss_pred CeEEEEeCCeEEEeeChhHHHH
Q 013741 103 DDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 103 d~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|++++|++|+++..|+.++..+
T Consensus 537 d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 537 DLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999887653
No 294
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=1.6e-18 Score=185.26 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+++.++..++. +-.||.+|+ ....||||||||++|||+++++|++++|||||+|||+.+..++.+.|+++
T Consensus 419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 419 QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4556666666654 334677765 35679999999999999999999999999999999999999999999997
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
. +|+|+|+++|+++ ..+.+|++++|++|+++..|+.++..
T Consensus 498 ~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 498 G-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred h-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 5 5899999999984 45679999999999999999988764
No 295
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=1.4e-18 Score=163.09 Aligned_cols=98 Identities=23% Similarity=0.339 Sum_probs=88.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
++++++.++.++|.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 115 KQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred HHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 346778999999987777665 469999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
+|+++|++. ++.+++|++++++.
T Consensus 190 iii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 190 ALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEecChh-hhhhhcceEEEEee
Confidence 999999974 78999999999863
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.78 E-value=1.5e-18 Score=163.70 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+..++++++++.+||.+. .+.. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 124 AARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred HHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 345678889999999753 3444 4579999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
|.|+|+++|++ ..+.+++|+++.+.
T Consensus 199 g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 199 GAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999995 45778899998763
No 297
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=1.1e-18 Score=162.51 Aligned_cols=96 Identities=23% Similarity=0.339 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+||.+..|+.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 107 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 181 (204)
T PRK13538 107 DEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM 181 (204)
T ss_pred HHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 457889999999987776655 469999999999999999999999999999999999999999999999888899
Q ss_pred EEEEecCCchHHHhhcCeEEEE
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L 108 (437)
+|+++|++. .+-..-+|++++
T Consensus 182 iii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 182 VILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred EEEEecChh-hhccCCceEEec
Confidence 999999975 455555677666
No 298
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.78 E-value=1e-18 Score=165.12 Aligned_cols=96 Identities=31% Similarity=0.398 Sum_probs=83.5
Q ss_pred HHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 10 VEETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 10 v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+++.++.+ |+++..+.. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+
T Consensus 129 ~~~~l~~l~~gl~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 202 (226)
T cd03248 129 AHSFISELASGYDTEVGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV 202 (226)
T ss_pred cHHHHHhccccccchhhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence 56778887 776555544 457999999999999999999999999999999999999999999999876 6899
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
|+++|++. ++. .+|++++|++|++
T Consensus 203 i~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 203 LVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred EEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999985 454 5999999999874
No 299
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.78 E-value=1.2e-18 Score=164.67 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
+++++++++.+||. ...++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKNI-----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35678999999995 3555544 56999999999999999999999999999999999999999999999987 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEe-CCeEEEeeC
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGD 118 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~~G~ 118 (437)
.|+|+++|++. ++ ..+|++++|. ++..+..|.
T Consensus 189 ~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 189 IAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 99999999975 45 4699999995 555555443
No 300
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.77 E-value=9.7e-19 Score=194.68 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.++.++..++.+||.+++|+.+| .+|||+|||+++|.+++.+|++++|||||+|+||.++..+.+.++++.
T Consensus 671 ~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~ 745 (885)
T KOG0059|consen 671 PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR 745 (885)
T ss_pred ChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 566788889999999999999999886 499999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~ 127 (437)
++|+.+|.|+|.. +|...+|||+.+|.+|+....|++++..+.|.
T Consensus 746 k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 746 KNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred hcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 9888999999995 68999999999999999999999999998774
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1e-18 Score=158.46 Aligned_cols=77 Identities=29% Similarity=0.517 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.+|++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999888999999999975 45 67999999999974
No 302
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.77 E-value=1.6e-18 Score=189.74 Aligned_cols=112 Identities=24% Similarity=0.395 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+.++++..++.+. .||.+|+ ..+.||||||||++|||+++++|+|++||||||+||+.+...+.+ ..
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~- 660 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR- 660 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-
Confidence 4567777887776543 5777875 356799999999999999999999999999999999999999888 22
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
..+++|+|+++|+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 661 -~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 661 -SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 236899999999985 456799999999999999999988754
No 303
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=2e-18 Score=157.34 Aligned_cols=83 Identities=29% Similarity=0.506 Sum_probs=76.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++.|+|+++|++. ++ ..+|++++|++|
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g 172 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENG 172 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECC
Confidence 56799999999999999999999999999999999999999999999996 5899999999986 45 469999999999
Q ss_pred eEEEee
Q 013741 112 ETIYFG 117 (437)
Q Consensus 112 ~~v~~G 117 (437)
++++.|
T Consensus 173 ~i~~~~ 178 (178)
T cd03247 173 KIIMQG 178 (178)
T ss_pred EEEecC
Confidence 998764
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=182.12 Aligned_cols=108 Identities=22% Similarity=0.343 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||.+.. +..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.
T Consensus 132 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~ 203 (530)
T PRK15064 132 EARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNS 203 (530)
T ss_pred HHHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCC
Confidence 45788999999997543 2333 56999999999999999999999999999999999999999999864 588
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeE-EEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGET-IYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~-v~~G~~~~~~ 123 (437)
|||+++|++. .+.+++|++++|++|++ ++.|++++..
T Consensus 204 tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 204 TMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 9999999975 68899999999999999 5889887553
No 305
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=2.4e-18 Score=160.47 Aligned_cols=86 Identities=21% Similarity=0.406 Sum_probs=78.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +|.|+|+++|++. .+.. +|++++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~ 198 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDA 198 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEEC
Confidence 456899999999999999999999999999999999999999999999985 4899999999975 4544 899999999
Q ss_pred CeEEEeeCh
Q 013741 111 GETIYFGDA 119 (437)
Q Consensus 111 G~~v~~G~~ 119 (437)
|+++..|++
T Consensus 199 g~i~~~g~~ 207 (207)
T cd03369 199 GEVKEYDHP 207 (207)
T ss_pred CEEEecCCC
Confidence 999988763
No 306
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=3.9e-18 Score=182.72 Aligned_cols=113 Identities=26% Similarity=0.392 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++++++.++..|+.+. .||.+|+ ..+.||||||||+++||+++++|++++||||||+||+.++..+.+.|++
T Consensus 443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 443 DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 3567777777776532 3566665 3567999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+. +++|+|+++|+++ ....+|+++.|++|+++..|+.++..
T Consensus 522 ~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 522 LM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred Hh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 85 4799999999984 46779999999999999999987653
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.7e-18 Score=182.15 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+|+. +..|..+ ..||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++ +.
T Consensus 415 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ 486 (530)
T PRK15064 415 EQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EG 486 (530)
T ss_pred HHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC
Confidence 45788999999994 5666655 469999999999999999999999999999999999999999999886 35
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~ 123 (437)
|||+++|++. .+.+++|++++|++|+++ +.|++++..
T Consensus 487 tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 487 TLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999974 788899999999999998 889887543
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.3e-18 Score=156.90 Aligned_cols=77 Identities=34% Similarity=0.515 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999987 899999999974 6777899999999885
No 309
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=5.9e-18 Score=151.48 Aligned_cols=119 Identities=23% Similarity=0.374 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++.++.+++.+.+...||++..+..+ -.|||||||||.||++|+.+|++|+||||++.||..++.++.++|-++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 467889999999999999998776655 579999999999999999999999999999999999999999998888
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEeeChhHHHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAKMAVKF 125 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~--~G~~v~~G~~~~~~~~ 125 (437)
.+ .|+.+++++|+.. |..-+.+++++|+ .||++..-+++-...|
T Consensus 179 w~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 179 WQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 76 7999999999975 6667899999998 6899988777755444
No 310
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.6e-18 Score=172.55 Aligned_cols=113 Identities=30% Similarity=0.467 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.|-++.+..|+. +-.+|.+|+ ..+-|||||||||+++|+++.||+|+++|||||.||+.+..++++.+++
T Consensus 455 eeV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~- 532 (591)
T KOG0057|consen 455 EEVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD- 532 (591)
T ss_pred HHHHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-
Confidence 3455555555543 345566775 4456999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
...|+|+|++.|.. ....-||+|++|++|++...|+-+++..
T Consensus 533 ~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 533 VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 45789999999985 4677899999999999999999998875
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=3.7e-18 Score=182.22 Aligned_cols=104 Identities=25% Similarity=0.363 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV 87 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv 87 (437)
.++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|+
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 57889999999887777664 6999999999999999999999999999999999999999999999987 48999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
|+++|++. .+..++||+++|+ |++...|..
T Consensus 508 iivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 508 LVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 99999964 6888999999996 477777763
No 312
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=4.8e-18 Score=154.36 Aligned_cols=85 Identities=25% Similarity=0.424 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++++ .|+|+++|++ ..+.+++|++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999998765 8999999997 467788999999998776
Q ss_pred EEe--eChh
Q 013741 114 IYF--GDAK 120 (437)
Q Consensus 114 v~~--G~~~ 120 (437)
+|. |++.
T Consensus 151 ~~~~~~~~~ 159 (177)
T cd03222 151 VYGIASQPK 159 (177)
T ss_pred cceeccCCc
Confidence 665 6554
No 313
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.75 E-value=4.6e-18 Score=157.54 Aligned_cols=92 Identities=25% Similarity=0.419 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 106 RTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred HHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 467889999999887776654 699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEE
Q 013741 88 VCSIHQPSSHLFYLFDDLLL 107 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~ 107 (437)
|+++|++.. -.+|+++.
T Consensus 181 i~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 181 LLTTHQDLG---LVEARELR 197 (198)
T ss_pred EEEEccccc---ccceEEee
Confidence 999999853 23566654
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=5.9e-18 Score=180.42 Aligned_cols=105 Identities=28% Similarity=0.389 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
.++++++++.+||.+ .+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t 212 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT 212 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence 457888999999953 55555 4699999999999999999999999999999999999999999999873 59
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM 121 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~ 121 (437)
||+++|++ ..+.+.+|++++|++|+++ |.|+.++
T Consensus 213 viiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 213 VVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred EEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 99999997 4688899999999999986 8888764
No 315
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.6e-18 Score=177.96 Aligned_cols=103 Identities=27% Similarity=0.440 Sum_probs=92.5
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741 18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (437)
Q Consensus 18 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~ 97 (437)
++.+-.||.||.+ ...||||||||++|||||++||.||+|||.||.||+.+...+.+.|.++.++ +|||++.|..+
T Consensus 589 ~~p~gY~T~VGEk-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLS-- 664 (716)
T KOG0058|consen 589 NFPDGYNTVVGEK-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLS-- 664 (716)
T ss_pred hCccccccccCCc-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhh--
Confidence 5667799999963 3469999999999999999999999999999999999999999999987765 99999999965
Q ss_pred HHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 98 LFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 98 i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
..+.+|+|+++++|+++..|+-+|..+
T Consensus 665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 665 TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 567799999999999999998887754
No 316
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=6.7e-18 Score=157.59 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||.+..+..+ +.||||||||++||++++.+|++++|||||+|||+.+..++.+.|++++++|+|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred HHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 45889999999987666655 4699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeC
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
|+++|++. ++.. |+++.+..
T Consensus 181 ii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 181 IAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred EEEeCCch-hhcc--CcEEeecC
Confidence 99999974 4554 88877743
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=1.5e-17 Score=162.35 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=79.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL-KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
..+.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. .+ ..+|++++|+
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~ 232 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILH 232 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEE
Confidence 34689999999999999999999999999999999999999999864 5554 4789999999976 34 5799999999
Q ss_pred CCeEEEeeChhHHH
Q 013741 110 NGETIYFGDAKMAV 123 (437)
Q Consensus 110 ~G~~v~~G~~~~~~ 123 (437)
+|++++.|+++++.
T Consensus 233 ~G~i~~~g~~~~~~ 246 (282)
T cd03291 233 EGSSYFYGTFSELQ 246 (282)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
No 318
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=6.9e-18 Score=195.80 Aligned_cols=113 Identities=24% Similarity=0.370 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.++++++..++. +-.||.+|. ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++
T Consensus 1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1326 EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 3466666665543 445899985 55679999999999999999999999999999999999999999999998
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeC----CeEE-EeeChhHHH
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSN----GETI-YFGDAKMAV 123 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~----G~~v-~~G~~~~~~ 123 (437)
++ +++|+|+++|+++ ..+.+|+|++|++ |+++ ..|+.+++.
T Consensus 1405 ~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1405 KDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 73 6899999999984 4567999999998 9955 899988775
No 319
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.8e-18 Score=181.45 Aligned_cols=108 Identities=28% Similarity=0.384 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.++++++++.+++. +..+++++ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++ .|
T Consensus 407 ~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g- 478 (638)
T PRK10636 407 EQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG- 478 (638)
T ss_pred HHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence 45788999999996 35666665 69999999999999999999999999999999999999999999987 34
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~ 123 (437)
|||+++|++ ..+.++||++++|++|+++ |.|+.++..
T Consensus 479 tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 479 ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999996 5788999999999999997 889888653
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=9.9e-18 Score=181.07 Aligned_cols=106 Identities=22% Similarity=0.367 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
.+++++++++.+|+. +..+..++ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +
T Consensus 125 ~~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~ 196 (638)
T PRK10636 125 IRSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q 196 (638)
T ss_pred hHHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C
Confidence 345788999999997 46676665 59999999999999999999999999999999999999999998875 4
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChh
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK 120 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~ 120 (437)
.|||+++|++ ..+.+++|++++|++|++. |.|+.+
T Consensus 197 ~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 197 GTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred CeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHH
Confidence 6999999996 4788999999999999996 677665
No 321
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=1.2e-17 Score=157.04 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHH
Q 013741 9 IVEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ--VLKC 79 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~--~l~~ 79 (437)
+.+++++.++|.+..+. .. +..+..||||||||++||++++.+|++++|||||+|||+.++..+++ .++.
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~ 187 (218)
T cd03290 109 RYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187 (218)
T ss_pred HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 34566777777554321 12 22467899999999999999999999999999999999999999998 6777
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
+++.|.|+|+++|++. .+ ..+|++++|++|+
T Consensus 188 ~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 188 LQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 7667899999999985 45 5699999999884
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=1.2e-17 Score=177.85 Aligned_cols=105 Identities=27% Similarity=0.355 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+|+.. .++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tv 211 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTV 211 (552)
T ss_pred HHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeE
Confidence 45677788888843 44444 569999999999999999999999999999999999999999999876 3599
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHH
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMA 122 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~ 122 (437)
|+++|++. .+...+|++++|++|+++ +.|+.++.
T Consensus 212 IiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 212 VAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred EEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 99999974 688899999999999976 78887754
No 323
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=1.3e-17 Score=155.27 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=71.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+ .+++++++|+|||+++|++. .+.. +|++++|+
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~ 201 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLD 201 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEe
Confidence 457899999999999999999999999999999999999999998 56777667899999999975 4555 99999999
Q ss_pred CCe
Q 013741 110 NGE 112 (437)
Q Consensus 110 ~G~ 112 (437)
+|+
T Consensus 202 ~G~ 204 (204)
T cd03250 202 NGR 204 (204)
T ss_pred CCC
Confidence 985
No 324
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=6.3e-18 Score=186.15 Aligned_cols=104 Identities=32% Similarity=0.442 Sum_probs=93.8
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 17 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
.+|.+-.||.+|+. ...||||||||++||||+++||+||+|||.||.||+.+.+.+.+.|.+. ..|+|+|++.|+++
T Consensus 1110 ~sLP~GyDT~vGer-G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS- 1186 (1228)
T KOG0055|consen 1110 SSLPQGYDTRVGER-GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS- 1186 (1228)
T ss_pred hcCcCcccCccCcc-cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh-
Confidence 35778889999974 4469999999999999999999999999999999999999999999985 46899999999986
Q ss_pred HHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 97 HLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
..+.+|.+.++++|++++.|+-+++.+
T Consensus 1187 -TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1187 -TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred -hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 456699999999999999999998875
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.74 E-value=1.8e-17 Score=176.78 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHcCCccccccc-ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhc
Q 013741 6 INDIVEETIIKMGLQACAETK-IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK-CIALD 83 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~-vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~-~l~~~ 83 (437)
.++++++.++.+++.+..+.. -|-.....||||||||++|||+++.+|++++|||||++||+.+...+.+.+. .+..+
T Consensus 441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 345678899999987654332 1222346799999999999999999999999999999999999999998654 56567
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYF 116 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~ 116 (437)
|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 521 ~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 521 GKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 899999999974 5678999999999998754
No 326
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=2e-17 Score=176.13 Aligned_cols=106 Identities=25% Similarity=0.279 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCcccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 7 NDIVEETIIKMGLQACAETKIGNW--HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~--~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
++.+++.++.+++.+..+. ++. ....||||||||++|||+++++|++++|||||+|||+.+...+.+.|.+..+ .
T Consensus 422 ~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 499 (547)
T PRK10522 422 PALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM 499 (547)
T ss_pred HHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4567888999998765432 221 1357999999999999999999999999999999999999999999987654 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYF 116 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~ 116 (437)
|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 500 ~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 500 GKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 899999999974 5678999999999999866
No 327
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.2e-17 Score=169.11 Aligned_cols=112 Identities=19% Similarity=0.366 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
.+++.+++.+++|+.+|+....++++++ ||+||||.|.||+++..++++++|||||+.|+...+..+.+.+++|+
T Consensus 118 d~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk 192 (500)
T COG1129 118 DRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192 (500)
T ss_pred CHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 4566778999999999997557888874 99999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
++|.++|.++|.. .|++++|||+.+|.+|+.+-.++.
T Consensus 193 ~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 193 AQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred hCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999996 689999999999999999998883
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=1.2e-17 Score=178.39 Aligned_cols=98 Identities=27% Similarity=0.438 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |.|
T Consensus 190 ~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~t 263 (590)
T PRK13409 190 RGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKY 263 (590)
T ss_pred HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCE
Confidence 4578999999999988887775 5999999999999999999999999999999999999999999999988 999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCC
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
||+++|++. .+..++|++++|++|
T Consensus 264 vIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 264 VLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999974 688999999999864
No 329
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=1.6e-17 Score=183.61 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+..++++ .++.+||.+. .|+.++ .|||||||||.||++|..+| ++++|||||+|||+..+..+.+.|++++
T Consensus 465 ~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~ 538 (943)
T PRK00349 465 EIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR 538 (943)
T ss_pred HHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 3445564 6888999865 566654 69999999999999999997 9999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
+.|.|||+++|++. ++ ..+|++++| .+|++++.|+++++.
T Consensus 539 ~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 539 DLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred hCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 88999999999975 45 469999999 899999999998763
No 330
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1e-17 Score=151.63 Aligned_cols=75 Identities=31% Similarity=0.623 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++++ ++|+|+++|++. ++.. +|++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999964 699999999975 5666 99999999885
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=2.3e-17 Score=178.39 Aligned_cols=104 Identities=24% Similarity=0.439 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+|+.. +.. +..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .|
T Consensus 136 ~~~~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~t 205 (635)
T PRK11147 136 ENRINEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GS 205 (635)
T ss_pred HHHHHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CE
Confidence 457889999999963 444 45799999999999999999999999999999999999999999999873 59
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM 121 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~ 121 (437)
||+++|++ ..+.+.+|+++.|++|+++ |.|+.++
T Consensus 206 vlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 206 IIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred EEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHH
Confidence 99999996 4688899999999999997 5687653
No 332
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=168.27 Aligned_cols=107 Identities=26% Similarity=0.438 Sum_probs=98.6
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 17 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
+.|.+-.||.||+ ...+||||||||+.+||+|-.||.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+
T Consensus 456 l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs- 533 (580)
T COG4618 456 LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS- 533 (580)
T ss_pred HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH-
Confidence 3456678999996 45689999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhhcCeEEEEeCCeEEEeeChhHHHHHH
Q 013741 97 HLFYLFDDLLLLSNGETIYFGDAKMAVKFF 126 (437)
Q Consensus 97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f 126 (437)
+....|+|++|++|++-.+|+.+|+....
T Consensus 534 -~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 534 -ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred -HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 78889999999999999999999988754
No 333
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=3.4e-17 Score=178.11 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.++++++++.+||.+ ..+..+ +.|||||||||+||++++.+|++|+|||||+|||..++..+.+.|++. +|
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g- 675 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG- 675 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence 356788999999973 455544 579999999999999999999999999999999999999998888764 34
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAVK 124 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~~ 124 (437)
|||+++|++. .+..++|++++|.+|+++ +.|+.++..+
T Consensus 676 tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 676 GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999974 688899999999999998 7888775443
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.72 E-value=2.6e-17 Score=191.10 Aligned_cols=101 Identities=30% Similarity=0.470 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.++++..++.+. .||.+|. ....||||||||++|||+|+++|+||+|||||++||+.+...+.+.|+++
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~ 625 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 567778888877654 4677765 46689999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
++ +|+|+|+++|+++ .+ +.+|++++|++|
T Consensus 626 ~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 626 KGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred hhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 86 6899999999985 34 789999999986
No 335
>PLN03232 ABC transporter C family member; Provisional
Probab=99.72 E-value=3.5e-17 Score=191.17 Aligned_cols=113 Identities=16% Similarity=0.297 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.++++..+|.+ -.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus 1339 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1339 ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 45666777766643 34677765 44579999999999999999999999999999999999999999999986
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +++|+|+++|+++ .+ ..+|+|++|++|+++..|+++++.+
T Consensus 1418 ~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1418 F-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred c-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 5799999999985 34 4599999999999999999998753
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=5.4e-17 Score=176.53 Aligned_cols=106 Identities=21% Similarity=0.342 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 34566677777775 3345444 469999999999999999999999999999999999999999999886 67
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM 121 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~ 121 (437)
|+|+++|+. ..+.+.||++++|++|++. |.|+.++
T Consensus 393 tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 393 TFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999999995 5688899999999999996 6777653
No 337
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=4.7e-17 Score=179.64 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=90.9
Q ss_pred HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 013741 14 IIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS 90 (437)
Q Consensus 14 l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t 90 (437)
+..+||... .+.. +..|||||+||+.||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus 471 L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvV 545 (924)
T TIGR00630 471 LIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVV 545 (924)
T ss_pred HhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 667787654 3444 4579999999999999999986 8999999999999999999999999999899999999
Q ss_pred ecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 91 IHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 91 ~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
+|++. .+ ..+|++++| ++|++++.|+++++.
T Consensus 546 eHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 546 EHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred ECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99974 45 589999999 899999999998763
No 338
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=3.4e-17 Score=151.94 Aligned_cols=91 Identities=23% Similarity=0.243 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+++.+..+..++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred HHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 468899999999876666554 699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeE
Q 013741 88 VCSIHQPSSHLFYLFDDL 105 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v 105 (437)
|+++|++. ..+.+|..
T Consensus 181 ii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 181 LLTSHQDL--PLNKADYE 196 (200)
T ss_pred EEEeCCch--hccccchh
Confidence 99999975 34556643
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=3.1e-17 Score=146.89 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+-+++++++|...||.+.+|...+. ||.||||++.||+-++.+|++|+||||++|+-.....+.-++|+.++.+
T Consensus 123 ~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~- 196 (249)
T COG4674 123 EERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK- 196 (249)
T ss_pred hHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-
Confidence 3456999999999999999988875 9999999999999999999999999999999999999999999999874
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.+|+++-|+. ..+-++.|+|.+|++|.+...|+.+++.
T Consensus 197 hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 197 HSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred ceEEEEeccH-HHHHHhhheeEEEeccceeecccHHHhh
Confidence 7899999995 6899999999999999999999998774
No 340
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=4.6e-17 Score=190.24 Aligned_cols=113 Identities=27% Similarity=0.321 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LK 78 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~ 78 (437)
+++.+++++..+|.+ --+|.||+. ...||||||||++|||++.++|+|++||||||+||+.++.++++. ++
T Consensus 707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 707 SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 356777777777654 236788864 457999999999999999999999999999999999999999765 44
Q ss_pred HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.+ .+++|+|+++|+++ ....+|+|++|++|+++..|+.++..
T Consensus 786 ~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 786 DE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 43 36899999999985 46779999999999999999988775
No 341
>PLN03130 ABC transporter C family member; Provisional
Probab=99.71 E-value=5.7e-17 Score=189.86 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.++++..++. .-.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 4566666666554 345677775 44579999999999999999999999999999999999999999999987
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +++|+|++.|.++. +. .+|||++|++|+++..|+++++.+
T Consensus 1421 ~-~~~TvI~IAHRL~t-I~-~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1421 F-KSCTMLIIAHRLNT-II-DCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred C-CCCEEEEEeCChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 5 57999999999853 44 499999999999999999998763
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.71 E-value=4.1e-17 Score=143.59 Aligned_cols=76 Identities=33% Similarity=0.426 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..||+|||||++||++|+.+|+++++||||+|||+.++..+.+.|+++ ++|+++++|++. ++.+.+|++++|++|+
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 349999999999999999999999999999999999999999999987 479999999974 6788899999999985
No 343
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.70 E-value=5e-17 Score=146.46 Aligned_cols=75 Identities=36% Similarity=0.493 Sum_probs=69.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
.+.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++ ++|+|+++|++. ....+|++++|++|
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 4679999999999999999999999999999999999999999999986 589999999975 35789999999865
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=1.1e-16 Score=170.54 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 9 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+++++++.+||.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | ||
T Consensus 422 ~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~v 493 (552)
T TIGR03719 422 PSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CA 493 (552)
T ss_pred HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eE
Confidence 4567899999964 456555 4699999999999999999999999999999999999999999999873 3 89
Q ss_pred EEEecCCchHHHhhcCeEEEEeC-CeEE-EeeChh
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSN-GETI-YFGDAK 120 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~-G~~v-~~G~~~ 120 (437)
|+++|++ ..+.+++|++++|++ |+++ +.|+.+
T Consensus 494 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 494 VVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 9999997 468889999999986 6776 556654
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=9.7e-17 Score=187.79 Aligned_cols=113 Identities=16% Similarity=0.270 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.++++..+|.+ -.||.+|. ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus 1389 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1389 EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 45666777777653 35777765 44579999999999999999999999999999999999999999999886
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +++|+|++.|+++ ....+|||++|++|+++..|+++++.+
T Consensus 1468 ~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1468 F-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred c-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 5799999999985 344589999999999999999998764
No 346
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.70 E-value=1.3e-16 Score=170.20 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 9 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
.++++++.+||.+ ..+..+ ..|||||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++. | ||
T Consensus 424 ~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tv 495 (556)
T PRK11819 424 PSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CA 495 (556)
T ss_pred HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eE
Confidence 4567899999963 456555 4699999999999999999999999999999999999999999999873 4 89
Q ss_pred EEEecCCchHHHhhcCeEEEEeC-CeEE-EeeChhH
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSN-GETI-YFGDAKM 121 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~-G~~v-~~G~~~~ 121 (437)
|+++|++. .+..++|++++|++ |++. +.|+.++
T Consensus 496 i~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 496 VVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 99999974 78899999999985 7876 5666553
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=2.2e-16 Score=146.75 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++|.+++++++++.-+|.+..|.++. .+|.||+-|++++++...+|+||++||-.+-.|+.-+.+-.+.++++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998874 69999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHc
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEA 129 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~ 129 (437)
.++++|+|+++|++. .+-+.||++++|++|++.+.|+++++.++|++.
T Consensus 194 ~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 194 VEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHcCCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 888899999999974 799999999999999999999999999988753
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.2e-16 Score=187.07 Aligned_cols=113 Identities=25% Similarity=0.288 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLK 78 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~ 78 (437)
+++.+++++..+|.+. .+|.+|+. ...||||||||++|||++.++|+|++||||||+||+.++.++.+ .++
T Consensus 707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 707 PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence 4577788888777543 36788864 45699999999999999999999999999999999999998875 455
Q ss_pred HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.+. +|+|+|+++|+++ ....+|+|++|++|+++..|+.++..
T Consensus 786 ~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 786 DEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 543 5799999999974 56779999999999999999998875
No 349
>PTZ00243 ABC transporter; Provisional
Probab=99.69 E-value=1.4e-16 Score=186.21 Aligned_cols=114 Identities=16% Similarity=0.266 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQ-PTVLLLDEPTSGLDSASAFFVIQVLK 78 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~-p~ll~lDEPtsgLD~~~~~~i~~~l~ 78 (437)
++.+.++++..||.+. .||.+|. ....||||||||++|||+|+++ |+||+||||||+||+.+...+.+.|+
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 3567778888777643 5777875 4457999999999999999996 89999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+.. +++|+|++.|.++ ....||+|++|++|+++..|+++++.+
T Consensus 1491 ~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1491 SAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 854 4799999999974 456699999999999999999998753
No 350
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=9.8e-17 Score=148.27 Aligned_cols=83 Identities=27% Similarity=0.278 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+++.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++.+++|+|+
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 176 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV 176 (195)
T ss_pred HHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 46788899999987776654 4699999999999999999999999999999999999999999998877788999
Q ss_pred EEEecCCc
Q 013741 88 VCSIHQPS 95 (437)
Q Consensus 88 i~t~hqp~ 95 (437)
|+++|++.
T Consensus 177 ii~sh~~~ 184 (195)
T PRK13541 177 LLSSHLES 184 (195)
T ss_pred EEEeCCcc
Confidence 99999975
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.68 E-value=1.6e-16 Score=185.47 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+.++++..+|.+ -.||.+|+ ....||||||||++|||+|+++|+||+|||||++||..+...+.+.|++
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456778888888753 35777775 4457999999999999999999999999999999999999999999998
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.. +++|||+++|.++ ....+|+|++|++|+++..|+++++.
T Consensus 1399 ~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1399 SF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred Hc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 64 4699999999975 34559999999999999999999875
No 352
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.3e-16 Score=138.80 Aligned_cols=114 Identities=24% Similarity=0.373 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (437)
++++...+++++.++... .+ +..++.+|||++||+.||+.|++.|++.|+||||.|||..-+..+.+.++.|.. -
T Consensus 126 ~iR~~a~~WL~~VEI~~~---Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l 201 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLD---RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred hHHHHHHHHHHhcccCcc---cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence 345667788888887643 23 346789999999999999999999999999999999999999999999999987 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|..+++++|+.. -.--+.||+++|.+|+++..|-.+.+.
T Consensus 202 ~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 202 GLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred CceEEEEechhH-HHHHhhhcceeecCCCEeccccccccc
Confidence 899999999964 455568999999999999999887664
No 353
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.9e-16 Score=141.19 Aligned_cols=77 Identities=36% Similarity=0.642 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
||||||||++||++++.+|++++|||||+|||..++..+.+.+++++++++|+++++|++. ++...+|+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999999999999887899999999964 6777889999999875
No 354
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.68 E-value=1.3e-16 Score=169.30 Aligned_cols=98 Identities=31% Similarity=0.516 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+++.++..++.+. .||.+|+ ....||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus 425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 425 DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 3567777888777543 4777775 4567999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
+. +++|+|+++|+++ ..+.+|++++|
T Consensus 504 ~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 504 LA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred hc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 75 5799999999984 35779999875
No 355
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.67 E-value=3.6e-16 Score=157.53 Aligned_cols=111 Identities=23% Similarity=0.393 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+.++.+++++++.+..||.-..|.+|++ ||-||||||.|-.+|..+|++|+|||||+-|-|..+.++++.|++++
T Consensus 113 ~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 113 DRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 3556778999999999999888888874 99999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
++|+|||.++|.. .|+.+.+||+.+|.+|+++-.-+
T Consensus 188 ~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 188 AEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999996 58999999999999999886655
No 356
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.8e-16 Score=160.97 Aligned_cols=112 Identities=21% Similarity=0.390 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++..++.+++..+.|++... .++ .+..||||.+|||.||+.|.++|++|+|||||.|.|.-+..+|.+++++++
T Consensus 374 ~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA 448 (500)
T COG1129 374 RRKERALAERYIRRLRIKTPSPEQ-----PIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA 448 (500)
T ss_pred hHHHHHHHHHHHHhcCcccCCccc-----hhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHH
Confidence 44555688999999998632 223 445799999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~ 120 (437)
++|++||+++... .|+..+||||++|++|+++-.=+.+
T Consensus 449 ~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 449 AEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999988885 5899999999999999998754443
No 357
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.67 E-value=4.2e-16 Score=172.49 Aligned_cols=108 Identities=25% Similarity=0.340 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 9 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..+.++.+||.+ ..+..+ +.||||||||+.||++|+.+| ++++|||||+|||..+...+.+.|+++.++|
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred HHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3457888899975 345544 469999999999999999999 9999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 884 ~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 884 NTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999984 34 679999999 699999999988764
No 358
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.67 E-value=4.3e-16 Score=179.56 Aligned_cols=112 Identities=27% Similarity=0.415 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEIL---TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~---~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++..+++ +.++.+||.+. .+..+ ..||||||||+.||++|+ .+|++++|||||+|||..++.++++.|++
T Consensus 784 ~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~ 857 (1809)
T PRK00635 784 PSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS 857 (1809)
T ss_pred HHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3445566 48899999875 56554 469999999999999998 69999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~~ 123 (437)
++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 858 L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 858 LTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred HHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9989999999999975 45 8999999996 79999999998764
No 359
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=155.64 Aligned_cols=102 Identities=30% Similarity=0.501 Sum_probs=90.3
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHH
Q 013741 19 LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHL 98 (437)
Q Consensus 19 L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i 98 (437)
|-+-.||.||.... .|||||||||+|||.++.+|+||++||.||.||+.+..++...|++++ .|+|.+++.|..+. +
T Consensus 385 lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i 461 (497)
T COG5265 385 LPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I 461 (497)
T ss_pred Cchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c
Confidence 45567899997544 389999999999999999999999999999999999999999999987 57899999999763 5
Q ss_pred HhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 99 FYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 99 ~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+ +|.+++|++|+++..|.-+++..
T Consensus 462 ~~-adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 462 ID-ADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred cC-CceEEEeeCCEEEecCcHHHHHH
Confidence 54 79999999999999999887764
No 360
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.66 E-value=6.4e-16 Score=178.11 Aligned_cols=102 Identities=25% Similarity=0.440 Sum_probs=91.1
Q ss_pred HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 013741 14 IIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS 90 (437)
Q Consensus 14 l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t 90 (437)
|+.+||++. .|+.+ ..|||||+|||.||++|..+| ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus 460 L~~vGL~~L~ldR~~-----~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvV 534 (1809)
T PRK00635 460 LIDLGLPYLTPERAL-----ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV 534 (1809)
T ss_pred HHhccccCCCCCCch-----hhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456788765 45555 469999999999999999999 8999999999999999999999999999899999999
Q ss_pred ecCCchHHHhhcCeEEEEe------CCeEEEeeChhHH
Q 013741 91 IHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMA 122 (437)
Q Consensus 91 ~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~ 122 (437)
+|++. +.+.+|++++|. +|++++.|++++.
T Consensus 535 eHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 535 EHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred eCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 99975 678999999996 7899999998765
No 361
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.7e-16 Score=157.18 Aligned_cols=104 Identities=30% Similarity=0.475 Sum_probs=92.9
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 17 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
+++-+-.+|+||....| |||||||||+|||+++.+|.+++|||.||.||..+...+...|.+++. ++|.|++.|..+
T Consensus 658 l~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS- 734 (790)
T KOG0056|consen 658 LQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS- 734 (790)
T ss_pred hcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh-
Confidence 67778889999975543 899999999999999999999999999999999999999999999986 588888899976
Q ss_pred HHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 97 HLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+.+ +|.++++++|+++..|.-+|+..
T Consensus 735 Tivn-AD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 735 TIVN-ADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred heec-ccEEEEEeCCeEeecCcHHHHHh
Confidence 3554 89999999999999999887764
No 362
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.65 E-value=5.9e-16 Score=167.49 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
.+.+.++++.+++. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++ +.
T Consensus 417 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 488 (635)
T PRK11147 417 PRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QG 488 (635)
T ss_pred HHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC
Confidence 34678889999985 45666664 69999999999999999999999999999999999999999999876 45
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe-CCeEEE-eeChhH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLS-NGETIY-FGDAKM 121 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~-~G~~~~ 121 (437)
|||+++|+. ..+..++|+++++. +|++.. .|+.++
T Consensus 489 tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 489 TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999996 57888999999998 798764 566553
No 363
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.65 E-value=9.8e-16 Score=143.66 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=78.7
Q ss_pred HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 14 IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 14 l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~----------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++..++.+..+.. +..||||||||+++|++++. +|++++|||||+|||+.++..+.+.|++++++
T Consensus 108 l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~ 182 (213)
T cd03279 108 LPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE 182 (213)
T ss_pred hhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 3444455444443 45799999999999999985 67899999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
|.|+|+++|++. .+...+|+++++++|.
T Consensus 183 ~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 183 NRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999974 6778899999999875
No 364
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.2e-15 Score=168.62 Aligned_cols=107 Identities=24% Similarity=0.322 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILT---QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 9 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~---~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++.+||... .+.. .+.||||||||+.||++|+. +|++++|||||+|||+.++..+.+.|+++.++|
T Consensus 807 ~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G 881 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQG 881 (924)
T ss_pred HHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 45578888999752 3443 35799999999999999997 599999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~ 122 (437)
.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999985 34 679999999 79999999998764
No 365
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.64 E-value=7.3e-16 Score=167.17 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCccccccccc----CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 7 NDIVEETIIKMGLQACAETKIG----NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg----~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++++++++.+||.+..+...| ......||||||||++||++++++|++++|||||+|||+.+...+.+.+++
T Consensus 551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--- 627 (659)
T TIGR00954 551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--- 627 (659)
T ss_pred HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---
Confidence 4567889999999876655332 113467999999999999999999999999999999999999999998876
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
.|+|+|+++|+++ ..+.+|++++|+
T Consensus 628 ~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 628 FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 3899999999985 357899999997
No 366
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.64 E-value=9.3e-16 Score=179.58 Aligned_cols=98 Identities=20% Similarity=0.349 Sum_probs=85.5
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCCchHHHh
Q 013741 23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA--LDGRIVVCSIHQPSSHLFY 100 (437)
Q Consensus 23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~--~~g~tvi~t~hqp~~~i~~ 100 (437)
.+|.+|. ....||||||||++|||++..+|++++|||||++||+.++..+.+.+.+.. .+|+|+|+++|++. ...
T Consensus 750 ~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~ 826 (1522)
T TIGR00957 750 DRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLP 826 (1522)
T ss_pred CCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhh
Confidence 3466765 456899999999999999999999999999999999999999999987542 35799999999985 345
Q ss_pred hcCeEEEEeCCeEEEeeChhHHH
Q 013741 101 LFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 101 ~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
.+|++++|++|+++..|+.++..
T Consensus 827 ~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 827 QVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hCCEEEEecCCeEEeeCCHHHHH
Confidence 59999999999999999988775
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.64 E-value=1.2e-15 Score=178.31 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=84.1
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 24 ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 24 ~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
+|.+|. ....||||||||++|||+++.+|++++|||||+|||+.++.++.+. ++++. +|+|+|+++|++. . ...+
T Consensus 539 ~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~-~~~a 614 (1490)
T TIGR01271 539 KTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-H-LKKA 614 (1490)
T ss_pred cccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-H-HHhC
Confidence 456665 3568999999999999999999999999999999999999999984 66654 4899999999985 3 4569
Q ss_pred CeEEEEeCCeEEEeeChhHHH
Q 013741 103 DDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 103 d~v~~L~~G~~v~~G~~~~~~ 123 (437)
|++++|++|+++..|+.++..
T Consensus 615 d~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 615 DKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999988765
No 368
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.63 E-value=7.7e-16 Score=163.37 Aligned_cols=86 Identities=28% Similarity=0.456 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..++++ -.||.+|+ ....||||||||++|||+++++|++++||||||+||+.+...+.+.|++
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456777888877754 34788886 4457999999999999999999999999999999999999999999998
Q ss_pred HHhcCCEEEEEecCC
Q 013741 80 IALDGRIVVCSIHQP 94 (437)
Q Consensus 80 l~~~g~tvi~t~hqp 94 (437)
+. +++|+|+++|++
T Consensus 516 ~~-~~~TvIiItHrl 529 (529)
T TIGR02868 516 AL-SGKTVVVITHHL 529 (529)
T ss_pred hc-CCCEEEEEecCC
Confidence 64 569999999985
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.62 E-value=1.7e-15 Score=158.52 Aligned_cols=104 Identities=28% Similarity=0.461 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+.+++.++..+|+.+. +++++ .||||||+||.+|++|+.+|++|+|||||+.||..+...+-+.|++ ..| |
T Consensus 132 e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g-t 202 (530)
T COG0488 132 EARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG-T 202 (530)
T ss_pred HHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-c
Confidence 4678889999999877 67665 5999999999999999999999999999999999999999999985 356 9
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChh
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK 120 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~ 120 (437)
+|+++|+ +..+-+.|++++-++.|++. |.|+.+
T Consensus 203 viiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 203 VIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred EEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence 9999999 78899999999999998765 555543
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=2.3e-15 Score=139.46 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++++++++. .+..++. ++.||||||||++||++++ .+|++++|||||+|||+..+..+.+.|+++++
T Consensus 95 ~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~- 165 (197)
T cd03278 95 GDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK- 165 (197)
T ss_pred hhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-
Confidence 467777777 3334443 4579999999999999997 46699999999999999999999999999876
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
+.|||+++|++. . .+.+|+++.+..
T Consensus 166 ~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 166 ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 689999999975 3 468999999973
No 371
>PTZ00243 ABC transporter; Provisional
Probab=99.61 E-value=3.8e-15 Score=174.34 Aligned_cols=96 Identities=28% Similarity=0.357 Sum_probs=81.8
Q ss_pred ccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741 25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 25 ~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~ 104 (437)
|.+|. ....||||||||++|||+++.+|++++|||||++||+.++..+++.+.....+|+|+|+++|++. ....+|+
T Consensus 774 t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ 850 (1560)
T PTZ00243 774 TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADY 850 (1560)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence 44543 45679999999999999999999999999999999999999998754332336899999999975 3467999
Q ss_pred EEEEeCCeEEEeeChhHHH
Q 013741 105 LLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 105 v~~L~~G~~v~~G~~~~~~ 123 (437)
+++|++|++++.|+.++..
T Consensus 851 ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 851 VVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred EEEEECCEEEEecCHHHHH
Confidence 9999999999999988764
No 372
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=4.6e-15 Score=142.25 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCcccccc---------cccCc--------ccCCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCC
Q 013741 8 DIVEETIIKMGLQACAET---------KIGNW--------HLRGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLD 66 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~---------~vg~~--------~~~~lSgGerkRv~ia~~l~~~----p~ll~lDEPtsgLD 66 (437)
+.++++++.+|+...... .+.+. .+..||||||||++||++++.+ |+++++||||+|||
T Consensus 112 ~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD 191 (247)
T cd03275 112 KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALD 191 (247)
T ss_pred HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCC
Confidence 456788999998643221 11111 2378999999999999999875 89999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 67 SASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 67 ~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
...+..+.+.|++++++|.++|+++|++ ++.+.+|+++++.+
T Consensus 192 ~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 192 NTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 9999999999999988899999999995 46789999999973
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=4e-15 Score=143.02 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCcccccc---------------cccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCC
Q 013741 6 INDIVEETIIKMGLQACAET---------------KIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLD 66 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~---------------~vg~~~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD 66 (437)
..+++++.++.+||...... ..-+..++.||||||||++||++|+ .+|+++++||||+|||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 45788999999998621100 0112345679999999999999998 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 67 SASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 67 ~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
...+..+.+.|++++ +|.++|+++|.+ ++.+.+|+++-+.
T Consensus 203 ~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 203 LSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999999999999985 488999999994 6788899998775
No 374
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=4.3e-15 Score=137.70 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l----~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++++++++. .+..++.+ +.||+|||||++||+++ +.+|++++|||||+|||..++..+.+.|+++++
T Consensus 90 ~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 90 QDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence 3567777777 45555544 57999999999999999 589999999999999999999999999999865
Q ss_pred c---CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 83 D---GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 83 ~---g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
+ +.||++++|++. ++.+ +|+|.+|..|+
T Consensus 162 ~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 162 KQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred cCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 3 358999999975 5655 49999998654
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=7e-15 Score=140.41 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=69.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 013741 30 WHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL 105 (437)
Q Consensus 30 ~~~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v 105 (437)
..++.||||||||++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.++|+++|.+ ++.+++|++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEE
Confidence 4567899999999999999974 5899999999999999999999999999866 78888888874 578999999
Q ss_pred EEEe
Q 013741 106 LLLS 109 (437)
Q Consensus 106 ~~L~ 109 (437)
++|.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9996
No 376
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=132.54 Aligned_cols=102 Identities=26% Similarity=0.420 Sum_probs=90.0
Q ss_pred HHHHHHH--cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 10 VEETIIK--MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 10 v~~~l~~--l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
-.+-++. +||++..++.+|- |||||||-++++++.++.|+||+|||=|+.|||.++..+++.-.++-+ .+.|
T Consensus 127 f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klT 201 (263)
T COG1101 127 FRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLT 201 (263)
T ss_pred HHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCc
Confidence 3344444 5688889998885 999999999999999999999999999999999999999999888776 6779
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
.++++|... +..++-+|+++|++|++|.+=
T Consensus 202 tlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 202 TLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred eEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 999999965 688999999999999999863
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=6.2e-15 Score=138.09 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=78.1
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 11 EETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 11 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++.++|.+..++.+ +.+|+|||||++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.+
T Consensus 109 ~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~ 182 (212)
T cd03274 109 GEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQ 182 (212)
T ss_pred CcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCE
Confidence 55667777777666655 4699999999999999974 4799999999999999999999999999864 567
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
+|+++|++ ++.+.+|++++|+.
T Consensus 183 ~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 183 FIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEECcH--HHHHhCCEEEEEEe
Confidence 77788985 67899999999974
No 378
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=3.7e-14 Score=125.92 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+.+++.+++-+.|+..||-+.. .|.+++-||.||||||++||+|+.+|+|++.||...+||...+-++.++.-+|.
T Consensus 121 ~~~~R~~~i~~TL~~VGL~Pdh----an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 121 EPEQRRKQIFETLRMVGLLPDH----ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred ChHHHHHHHHHHHHHhccCccc----cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 4677889999999999985432 234567899999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.+-|-++++. .-+-++.|+|++|++|+++..|+++++.
T Consensus 197 ek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 197 EKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhh
Confidence 7 688988888775 5789999999999999999999998764
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.54 E-value=1.9e-14 Score=133.98 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=71.5
Q ss_pred cccCCCCHHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhc-CCEEEEEecCCchHHHhh
Q 013741 30 WHLRGISSGEKKR------LSISIEILTQPTVLLLDEPTSGLDSASAF-FVIQVLKCIALD-GRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 30 ~~~~~lSgGerkR------v~ia~~l~~~p~ll~lDEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~ 101 (437)
..++.||+||||| +++|++++.+|+++++||||+|||+..+. .+.+.|++++++ |.++|+++|++. ....
T Consensus 111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~ 188 (204)
T cd03240 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDA 188 (204)
T ss_pred cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhh
Confidence 3456799999996 78999999999999999999999999999 999999999876 899999999964 4567
Q ss_pred cCeEEEEe-CCe
Q 013741 102 FDDLLLLS-NGE 112 (437)
Q Consensus 102 fd~v~~L~-~G~ 112 (437)
+|+++.|. +|+
T Consensus 189 ~d~i~~l~~~~~ 200 (204)
T cd03240 189 ADHIYRVEKDGR 200 (204)
T ss_pred CCEEEEEeeCCC
Confidence 99999996 453
No 380
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=3.5e-14 Score=124.51 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
....+.++.++|.+..- +..+..||||||||.+++|.|..-|+||+||||||.||..++..+-++|.++-+ +.+.
T Consensus 111 ~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vA 186 (223)
T COG4619 111 AAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186 (223)
T ss_pred HHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceE
Confidence 45667888999876432 234557999999999999999999999999999999999999999999999874 7789
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
++-++|+|. +..+.+|+++-+..|..
T Consensus 187 v~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 187 VLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred EEEEecChH-HHhhhhheEEEeccCcc
Confidence 999999985 56778999999998875
No 381
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.6e-14 Score=124.61 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.++++..++..|++.+..=.. .+.+.||||+|||.||+.++.+-.||+|||||+.||+.++..++++|++-+
T Consensus 124 ~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K 199 (235)
T COG4778 124 PREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK 199 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence 4566778899999999986543322 356899999999999999999999999999999999999999999999988
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
..|..+|-+-|+ ..--...+||++-+..
T Consensus 200 a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 200 ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 899999999998 4445677899987753
No 382
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=1.1e-13 Score=156.23 Aligned_cols=114 Identities=22% Similarity=0.348 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++-+++++...|++. -.|.||+ +.-.||||||||+++|||+-+|+||++||.|.|.+|+....++.+..-+
T Consensus 610 ~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~ 688 (1381)
T KOG0054|consen 610 EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR 688 (1381)
T ss_pred HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH
Confidence 4566777777776643 3455665 3346999999999999999999999999999999999999999986655
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
..-+++|+|++|||. +....+|.|++|++|++...|+.+|..
T Consensus 689 ~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 689 GLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 555789999999984 577889999999999999999999887
No 383
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.47 E-value=2.2e-13 Score=124.09 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 34 GISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
-+|||||||+++|++++ .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~ 171 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVL 171 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEE
Confidence 39999999999999996 699999999999999999999999999999888899999999974 557899999997
Q ss_pred C
Q 013741 110 N 110 (437)
Q Consensus 110 ~ 110 (437)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=138.44 Aligned_cols=108 Identities=23% Similarity=0.378 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
..+.++.++|..+| +.+..+..+ +++|||+|+|+++|++|..+|++|+|||||+|||..+...+-+.|++..+-
T Consensus 196 ~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~ 270 (614)
T KOG0927|consen 196 TFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI 270 (614)
T ss_pred hHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence 34456667777777 445555544 679999999999999999999999999999999999999999998774322
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeE-EEeeChh
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET-IYFGDAK 120 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~-v~~G~~~ 120 (437)
++|+++|. .+.+=..|.+|+-|.+++. .|.|+.+
T Consensus 271 --~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 271 --ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred --eEEEEecc-hhhhhhHhhhhheecccceeeecCCHH
Confidence 78888886 6788899999999999994 4556654
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=2.5e-13 Score=137.21 Aligned_cols=115 Identities=21% Similarity=0.332 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
..+.++...++++.++...+.- ....+.||||.+||+-+||||..+|++|+..+||.|||..++..+.+.|.+.++
T Consensus 376 ~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~ 451 (501)
T COG3845 376 RRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD 451 (501)
T ss_pred HHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh
Confidence 4567788999999999863221 123567999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.|+.|++++.+. +|++.++||+.+|++|+++...+++++
T Consensus 452 ~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 452 AGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred cCCEEEEEehhH-HHHHHhhheeeeeeCCceecccccccC
Confidence 999999999885 689999999999999999998887753
No 386
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=2.8e-13 Score=126.99 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=69.1
Q ss_pred cccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C-CEEEEEecCCchHHHhhcC
Q 013741 30 WHLRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G-RIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 30 ~~~~~lSgGerkRv~ia~~l----~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~t~hqp~~~i~~~fd 103 (437)
..+..||||||||+.++.++ +.+|+++++||||+|||+.++..+.+.|++++++ | .++|+++|+.. +..+.+|
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~ 200 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHE 200 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccC
Confidence 35568999999998877554 5899999999999999999999999999999876 5 57999999865 3556665
Q ss_pred --eEEEEeCCe
Q 013741 104 --DLLLLSNGE 112 (437)
Q Consensus 104 --~v~~L~~G~ 112 (437)
++++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888887
No 387
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.9e-13 Score=118.63 Aligned_cols=84 Identities=25% Similarity=0.485 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+.+.+.++.+||....|.+++ .||-||||||+||+-.++.+++=+||||+++||......+-..+..=+++|-.|
T Consensus 109 ~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiV 183 (209)
T COG4133 109 ATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183 (209)
T ss_pred hhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEE
Confidence 568889999999999999887 599999999999999999999999999999999999999999999888889999
Q ss_pred EEEecCCch
Q 013741 88 VCSIHQPSS 96 (437)
Q Consensus 88 i~t~hqp~~ 96 (437)
|.|+|||..
T Consensus 184 llttHq~l~ 192 (209)
T COG4133 184 LLTTHQPLP 192 (209)
T ss_pred EEecCCccC
Confidence 999999974
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.41 E-value=8.8e-14 Score=122.75 Aligned_cols=116 Identities=22% Similarity=0.353 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH-----hCC--CEEEEeCCCCCCCHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL-----TQP--TVLLLDEPTSGLDSASAFFVI 74 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~-----~~p--~ll~lDEPtsgLD~~~~~~i~ 74 (437)
|.+++...++++...++|++.....+ ..|||||=|||-+|-..+ .|| ++|+||||.++||......+-
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 45667778899999999987655444 479999999999886654 355 589999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 75 QVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 75 ~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+.|.+++..|.+||++.|+.+ ...+..|++.+|++|++...|..+|+.
T Consensus 173 rll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999986 567779999999999999999999875
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.41 E-value=2.3e-13 Score=123.37 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG 84 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g 84 (437)
++++.-++|...|+.+..|-. ..++.+|.-||-|+|.||.+++.+|++|+.||||+.+|+.++.++.++|.++.+ +|
T Consensus 132 rKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred hHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 356777899999999888743 457889999999999999999999999999999999999999999999999987 78
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.||++++|+.. .+.+-+|++-+|+=|+.+..++.+++++
T Consensus 210 TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 210 TTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred ceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 89999999964 6899999999999999999999988764
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=1.7e-12 Score=146.72 Aligned_cols=98 Identities=17% Similarity=0.329 Sum_probs=85.9
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
.|+.|. +...++|-||||-+++||||+++++||+|||.|+..|+.+-..|.++||+- -+++||+.+-|..+ .+.+ +
T Consensus 1265 Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~-TVmd-~ 1340 (1381)
T KOG0054|consen 1265 LDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLN-TVMD-S 1340 (1381)
T ss_pred CCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccc-hhhh-c
Confidence 444443 345679999999999999999999999999999999999999999999983 36799999999986 4666 8
Q ss_pred CeEEEEeCCeEEEeeChhHHHH
Q 013741 103 DDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 103 d~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|||++|++|+++.+|+|+++.+
T Consensus 1341 DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1341 DRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred CeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999998864
No 391
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.3e-12 Score=127.47 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 34 GISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
.||||||||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +...+|+++++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999987654 9999999999999999999999999999865 689999999985 568899999998
Q ss_pred CCe
Q 013741 110 NGE 112 (437)
Q Consensus 110 ~G~ 112 (437)
+|+
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 653
No 392
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.37 E-value=2.5e-12 Score=134.92 Aligned_cols=108 Identities=25% Similarity=0.285 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
++.+...|..+++.. ...++| +.||||||.||.+|..++.+|.+|+|||||+.||..+...+.+.|++. .-
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~G 487 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EG 487 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CC
Confidence 567888999999863 233444 579999999999999999999999999999999999999999998875 35
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|||+++|+ +..+-+.+++++.+.++-..|.|..++-.
T Consensus 488 tvl~VSHD-r~Fl~~va~~i~~~~~~~~~~~g~y~~y~ 524 (530)
T COG0488 488 TVLLVSHD-RYFLDRVATRIWLVEDKVEEFEGGYEDYL 524 (530)
T ss_pred eEEEEeCC-HHHHHhhcceEEEEcCceeEcCCCHHHHH
Confidence 99999999 46899999999999883333447766443
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.37 E-value=1.4e-12 Score=130.19 Aligned_cols=97 Identities=28% Similarity=0.452 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 88 (437)
+.+++++.|+|+...|..+. .|||||-||++||.+++++++++++|||||-||...+..+.+.++++++.+++|+
T Consensus 193 ~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~Vi 267 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267 (591)
T ss_pred cHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEE
Confidence 67889999999999888775 5999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCchHHHhhcCeEEEEeCC
Q 013741 89 CSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 89 ~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
++-|+.. -+--+.|-|.++.+-
T Consensus 268 VVEHDLa-vLD~lsD~vhI~YG~ 289 (591)
T COG1245 268 VVEHDLA-VLDYLSDFVHILYGE 289 (591)
T ss_pred EEechHH-HHHHhhheeEEEecC
Confidence 9999964 456678888888753
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.36 E-value=5.4e-13 Score=123.84 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
..+|+||||++.++++ +.+|+++++|||++|||+.....+. ..++++.+.|.++|+++|. .++.+++|++..+.+|
T Consensus 90 s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g 166 (200)
T cd03280 90 STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENA 166 (200)
T ss_pred chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEE
Confidence 5689999999999977 5899999999999999999999997 4788888789999999997 3678999999999999
Q ss_pred eEEEee
Q 013741 112 ETIYFG 117 (437)
Q Consensus 112 ~~v~~G 117 (437)
++.+.+
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 998874
No 395
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.35 E-value=4.2e-11 Score=113.82 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=134.3
Q ss_pred HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhHhhh----hHHHHHHHHHHHHHhhhhhhhHHHHHH-H
Q 013741 233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLS--NPAIYGR----PKCVAFIYGFLICLSVGGLPSFIEEHK-A 304 (437)
Q Consensus 233 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~-~~~--~~~i~~r----~~~l~f~~~~~~~~~~~~~~~~~~er~-v 304 (437)
|+++...|||.....-+++-+++.++.|.++-+. +.+ ..+.... .|.+.+.....+. ..... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence 6778889999988888888888888888887542 111 1121111 1111111111111 11111 122222 1
Q ss_pred hhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 013741 305 SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVL 384 (437)
Q Consensus 305 ~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~ 384 (437)
+.|+....=-++..|+++|.+.+++..++..+++.++.+++.+++. ..++..++..++...+..++|.+++...++.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2222222233678999999999999999999999999998877654 33444444455555667889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741 385 MGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM 433 (437)
Q Consensus 385 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~ 433 (437)
.+..+.+.+..+++.+||.+.|.+.+|.| ++| +.+++|++|+.|++-
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~-~~~-i~~~~P~~~~~~~~r 202 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAW-MQG-LAKINPLTYAVDGAR 202 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHH-HHH-HHHHCcHHHHHHHHH
Confidence 88888888888899999999999999985 899 999999999999864
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=3.7e-12 Score=114.29 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 34 GISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
++|+||+||++++++|.. +|+++++|||++|+|+.....+.+.+++..++|.++|+++|++. +.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 699999999999999987 78999999999999999999999999988766889999999974 567799999986
Q ss_pred C
Q 013741 110 N 110 (437)
Q Consensus 110 ~ 110 (437)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 397
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.34 E-value=2.9e-12 Score=136.79 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741 33 RGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~----p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
+.+||||++|++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||+++|+|. +...+|+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 56899999999999999985 699999999999999999999999999985 799999999984 45689999999
Q ss_pred eCCe
Q 013741 109 SNGE 112 (437)
Q Consensus 109 ~~G~ 112 (437)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8865
No 398
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.1e-11 Score=131.31 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+.-+.|.++||.=. +.|. ...+|||||.||+-+|.+|..+. .+++|||||+||......++++.|.+|.+.|.
T Consensus 801 rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn 876 (935)
T COG0178 801 RKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN 876 (935)
T ss_pred HHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 34456677787632 2342 44579999999999999999887 89999999999999999999999999999999
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe------CCeEEEeeChhHHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAVK 124 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~~~ 124 (437)
|||++-|.. ++.+.+|.|+=|- +|++|..|+|+++.+
T Consensus 877 TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 877 TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999985 5788899999883 689999999999864
No 399
>PRK10869 recombination and repair protein; Provisional
Probab=99.30 E-value=8e-12 Score=132.62 Aligned_cols=104 Identities=19% Similarity=0.347 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCcccc-------cc----cccCc----------------ccCCCCHHHHHHHHHHHHHHh----CCC
Q 013741 6 INDIVEETIIKMGLQACA-------ET----KIGNW----------------HLRGISSGEKKRLSISIEILT----QPT 54 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~-------~~----~vg~~----------------~~~~lSgGerkRv~ia~~l~~----~p~ 54 (437)
..+.|.+.|+.|+|.+.. +. .-|.. ..+.+||||++|++||+.++. +|+
T Consensus 375 l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~ 454 (553)
T PRK10869 375 LAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETP 454 (553)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCC
Confidence 445778889999997652 11 11211 024689999999999999997 589
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 55 VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 55 ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
++++|||++|||..++..+.+.|+++++ +.+|||++|+|. +...+|+.+.+.++.
T Consensus 455 ~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 455 ALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSKET 509 (553)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEeccc
Confidence 9999999999999999999999999975 689999999984 568999999998753
No 400
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.29 E-value=7.8e-12 Score=133.70 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=69.6
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741 31 HLRGISSGEKKRLSISIEIL----------TQPTVLLLDEPT-SGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~----------~~p~ll~lDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~ 99 (437)
....||||||||++||++++ .+|++++||||| ++||+.+...+.+.|+++ .|.+||+++|++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 5889999999964 55
Q ss_pred hhcCeEEEEeC-CeE
Q 013741 100 YLFDDLLLLSN-GET 113 (437)
Q Consensus 100 ~~fd~v~~L~~-G~~ 113 (437)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999985 654
No 401
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=9.6e-12 Score=141.79 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=74.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741 30 WHLRGISSGEKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (437)
Q Consensus 30 ~~~~~lSgGerkRv~ia~~l~~----------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~ 99 (437)
..++.|||||++||++|++|+. +|++||+||||+|||+.+...+++.|++++..|++|++++|.|. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 3568899999999999999986 79999999999999999999999999999888999999999974 578
Q ss_pred hhcCeEEEEeCC
Q 013741 100 YLFDDLLLLSNG 111 (437)
Q Consensus 100 ~~fd~v~~L~~G 111 (437)
..+|+|.+++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999743
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.26 E-value=1.1e-11 Score=123.88 Aligned_cols=94 Identities=22% Similarity=0.377 Sum_probs=82.8
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Q 013741 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVV 88 (437)
Q Consensus 10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi 88 (437)
..++++-|+|++..+..+. +|||||.|||+||.+|..++++++||||++-||+..+..+.+.+|+... .++|.+
T Consensus 436 ~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~ 510 (591)
T COG1245 436 KTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTAL 510 (591)
T ss_pred HHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEE
Confidence 4567788888888877764 6999999999999999999999999999999999999999999999998 678999
Q ss_pred EEecCCchHHHhhcCeEEEEe
Q 013741 89 CSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 89 ~t~hqp~~~i~~~fd~v~~L~ 109 (437)
++-|+.. -+--+.||+++..
T Consensus 511 vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 511 VVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred EEeccee-hhhhhhceEEEEe
Confidence 9999964 4566788888775
No 403
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.23 E-value=2.1e-11 Score=105.24 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHh
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC-IAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~-l~~ 82 (437)
+.+++.++..+++.||....+. .+..||||||-||++-|+|+..|+.++||||+|.||..-+.+..+..-. +..
T Consensus 109 ~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ 183 (213)
T COG4136 109 NARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA 183 (213)
T ss_pred HHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3566788999999999887765 3457999999999999999999999999999999999999999887544 445
Q ss_pred cCCEEEEEecCC
Q 013741 83 DGRIVVCSIHQP 94 (437)
Q Consensus 83 ~g~tvi~t~hqp 94 (437)
.|..+|.++|+-
T Consensus 184 agiPtv~VTHD~ 195 (213)
T COG4136 184 AGIPTVQVTHDL 195 (213)
T ss_pred cCCCeEEEeccc
Confidence 799999999984
No 404
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.8e-11 Score=121.70 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+..+.-+..+||+.- +....+.+||||||-||.+|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.|
T Consensus 460 ee~r~hl~~~Gl~g~----la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGV 532 (582)
T KOG0062|consen 460 EEIRRHLGSFGLSGE----LALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGV 532 (582)
T ss_pred HHHHHHHHhcCCCch----hhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcE
Confidence 456667888998632 222335689999999999999999999999999999999999999998888875 3578
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~ 115 (437)
|+++|+ ...+-.+|+.+-+..+|++.-
T Consensus 533 v~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 533 VLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 999999 467899999999999999864
No 405
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.21 E-value=8.1e-10 Score=106.35 Aligned_cols=197 Identities=13% Similarity=-0.001 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHHHH
Q 013741 227 LCILSHRSFLNMLRD-MGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEHKA 304 (437)
Q Consensus 227 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~~~~er~v 304 (437)
...+.+|+++..+|+ |......+++-++.-+++|..+-....+..+ ....-|..-+.+.+..+ ++.. -.--..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g---~~y~~f~~pg~l~~~~~~~~~~--~~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG---VSYAAFLAAGMVATSAMTASTF--ETIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC---CCHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 345679999999999 8988888999888888888887543111111 11122222222222111 1110 000123
Q ss_pred hhhccCCCCc--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013741 305 SYRERISCHY--------GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV 376 (437)
Q Consensus 305 ~~rE~~~g~Y--------~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i 376 (437)
+.|||.+|.+ ++..+.+||++.+.-..++..++...+.++ .|..+. .........+++...+..++|.++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 678899999999877777766665554443 344433 334444444455556666899999
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741 377 ALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI 432 (437)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l 432 (437)
+.+.++.+.+..+.+.+..+++..||.+.|.+.+|.+ +++ +.++||+.|+.|++
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~-lq~-i~~~nPlt~~v~~~ 213 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDV-IQG-MTHFLPLAHSIDDI 213 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHH-HHH-HHHHCcHHHHHHHH
Confidence 9999999998888889999999999999999999985 788 99999999999985
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.20 E-value=3.5e-11 Score=104.27 Aligned_cols=57 Identities=40% Similarity=0.710 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 013741 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63 (437)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts 63 (437)
..++++++++.+++.+..++.++.. .+.||||||||+.||++|+.+|++++|||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4567999999999999888888653 37899999999999999999999999999996
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.20 E-value=3.6e-11 Score=126.02 Aligned_cols=100 Identities=29% Similarity=0.340 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCcccccccccC-cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQACAETKIGN-WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~-~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
++.+.++|.+.||++..+..-+. ..-+.||+|||||+++||.|+++|++++|||.|++||..+...+.+.+++-. .+.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~ 565 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA 565 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence 45788999999999988775443 2457899999999999999999999999999999999999999999998732 468
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
|||-+.|+|. +..+.++.+-+.
T Consensus 566 tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 566 TVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred EEEEeccchh--hHHHHhhheeec
Confidence 9999999976 455556655543
No 408
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.19 E-value=2e-09 Score=103.48 Aligned_cols=205 Identities=13% Similarity=0.099 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCChhhHh--hhhHHHHHHHHHHHHH----hhhhhh
Q 013741 224 WKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLSNPAIY--GRPKCVAFIYGFLICL----SVGGLP 296 (437)
Q Consensus 224 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~-~~~~~~i~--~r~~~l~f~~~~~~~~----~~~~~~ 296 (437)
+++++.+++|+++...|||..+...+++-++.-+++|.+|-.. +.+..... ...-..|...+.+.+. ++..-.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999988542 11100000 0011122222221111 111111
Q ss_pred hHHHHHH--HhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHH
Q 013741 297 SFIEEHK--ASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMM 374 (437)
Q Consensus 297 ~~~~er~--v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~ 374 (437)
....||. ...+=+... -++..+.+++++..+-..++..++..++.+. .|.+.+...+......+++......++|.
T Consensus 81 ~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl 158 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGL 158 (253)
T ss_pred HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 222222222 3778899999999987777766555554433 36655544444334444445556678999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCc---ccccccccccccChhHHHHHHh
Q 013741 375 VVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDL---PKFFWQYPMSYITFAAWAIEPI 432 (437)
Q Consensus 375 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~w~w~~~yisp~~y~~e~l 432 (437)
+++.++++......+.+.++.+++..||.+-|.+.+ |.| ++| +.++||+.|..|++
T Consensus 159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~-l~~-i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 159 ALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTW-LYW-ICALNPFTHAVELV 217 (253)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHH-HHH-HHHhCcHHHHHHHH
Confidence 999999998888888888888888999999898766 664 677 99999999999876
No 409
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-11 Score=124.60 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
.+..+++|..+|.++-. -....+.+|||=|=|+++||||..+||||+|||||+.||..+...+.+.|+.+. .|
T Consensus 175 ~ei~~~~L~glGFt~em----q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T 247 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEM----QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---IT 247 (582)
T ss_pred HHHHHHHHHhCCCCHHH----HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ce
Confidence 44555588888886432 123456899999999999999999999999999999999999999999998864 79
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChh
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK 120 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~ 120 (437)
+|+++|+ +..+-+.|.+|+-+++-++- |-|+.+
T Consensus 248 ~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 248 SLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred EEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 9999999 67788888888888765543 445544
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.15 E-value=3.5e-10 Score=120.18 Aligned_cols=91 Identities=24% Similarity=0.340 Sum_probs=81.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE-
Q 013741 32 LRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL- 108 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L- 108 (437)
..+|||||.||+-+|..+=++=. +++||||+-||.+....++++.|++|++.|.|+|++-|++ +....+|+|+=+
T Consensus 479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiG 556 (935)
T COG0178 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIG 556 (935)
T ss_pred CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeC
Confidence 35799999999999999977643 6799999999999999999999999999999999999995 577889999987
Q ss_pred -----eCCeEEEeeChhHHHH
Q 013741 109 -----SNGETIYFGDAKMAVK 124 (437)
Q Consensus 109 -----~~G~~v~~G~~~~~~~ 124 (437)
++|++++.|+++++.+
T Consensus 557 PgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 557 PGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred CCCCcCCCEEEEccCHHHHHh
Confidence 4799999999998864
No 411
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.14 E-value=7.4e-11 Score=120.25 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
...+.+..++..+||+. ..+.+ .+.||+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.++
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--- 555 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVP-----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--- 555 (614)
T ss_pred chHHHHHHHHHHhCCCccccccc-----hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---
Confidence 34567889999999984 33333 4579999999999999999999999999999999999999999888764
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEeeChh
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNG-ETIYFGDAK 120 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G-~~v~~G~~~ 120 (437)
.-+||.++|+- .-|-+..+++.+-.+| ...+.|+..
T Consensus 556 ~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 556 PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CCceeeeechh-hHHHHHHHHhHhhccCceeecCccHH
Confidence 34788999995 4688888888888754 455666554
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=5.3e-11 Score=112.26 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=70.9
Q ss_pred cCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeE
Q 013741 32 LRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDL 105 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l--~~~p~ll~lDEP---tsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v 105 (437)
.+++|.|+++++.++..+ +.+|++++|||| |++||..+.... .++.+.+ .|.++|+++|. .++.+++|++
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~ 162 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEV 162 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcC
Confidence 357999999999999999 899999999999 999998888543 3455554 58899999996 5789999999
Q ss_pred EEEeCCeEEEeeC
Q 013741 106 LLLSNGETIYFGD 118 (437)
Q Consensus 106 ~~L~~G~~v~~G~ 118 (437)
..+++|++...++
T Consensus 163 ~~i~~g~~~~~~~ 175 (222)
T cd03285 163 PNVKNLHVTALTD 175 (222)
T ss_pred CCeEEEEEEEEEe
Confidence 9999999988764
No 413
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.11 E-value=4.4e-09 Score=99.75 Aligned_cols=187 Identities=9% Similarity=0.084 Sum_probs=116.0
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhh-hhHHHHHHHHHHHHHhhhhhhhHHHHHH--HhhhccCCCCcc
Q 013741 239 LRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYG-RPKCVAFIYGFLICLSVGGLPSFIEEHK--ASYRERISCHYG 315 (437)
Q Consensus 239 ~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~-r~~~l~f~~~~~~~~~~~~~~~~~~er~--v~~rE~~~g~Y~ 315 (437)
+|||.....-+.+-+++-++.+.+|-+- .+.+..+. -.+.+.... +.+.....--....||. .+.|=+... .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLMALAA--ISTAFTGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 6899988888888888777777777542 11111111 111110000 11111111112233433 333333332 37
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHH
Q 013741 316 EAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVP---NVLMGMGVGTA 392 (437)
Q Consensus 316 ~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~---~~~~a~~~~~~ 392 (437)
+..|+++|.+..++..++..+++. +++++.|++...... ..++...+....+.+++.+++++++ +.+.+..+++.
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888877665554 556677988654332 2333333333444566666666664 44444777788
Q ss_pred HHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741 393 LIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM 433 (437)
Q Consensus 393 ~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~ 433 (437)
...+++++||.+.|.+.||.| ++| +.+++|++|+.+++-
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~-lq~-i~~~~P~t~~~~~~r 194 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTW-IKW-FVRVQPSSYATEALR 194 (232)
T ss_pred HHHHHHHHhheeeecccccHH-HHH-HHHhCcHHHHHHHHH
Confidence 888899999999999999985 899 999999999999863
No 414
>PRK03918 chromosome segregation protein; Provisional
Probab=99.09 E-value=2.5e-10 Score=128.45 Aligned_cols=77 Identities=25% Similarity=0.269 Sum_probs=68.3
Q ss_pred ccCCCCHHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741 31 HLRGISSGEKKR------LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 31 ~~~~lSgGerkR------v~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~ 104 (437)
.+..||||||++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.++|+++|++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 456799999995 4555678899999999999999999999999999999887788999999996 36789999
Q ss_pred EEEEe
Q 013741 105 LLLLS 109 (437)
Q Consensus 105 v~~L~ 109 (437)
++.|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
No 415
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.06 E-value=6.1e-10 Score=126.77 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=67.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741 30 WHLRGISSGEKKRLSISIEILT--------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 30 ~~~~~lSgGerkRv~ia~~l~~--------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~ 101 (437)
..+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+.+++.|++|++++|.+. -.-.+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4568899999999999999996 89999999999999999999999999999989999999999642 23333
Q ss_pred cCeEEEEe
Q 013741 102 FDDLLLLS 109 (437)
Q Consensus 102 fd~v~~L~ 109 (437)
-.+|.|-.
T Consensus 1024 ~~qi~V~k 1031 (1047)
T PRK10246 1024 PVQIKVKK 1031 (1047)
T ss_pred cceEEEEE
Confidence 44555554
No 416
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=5.4e-10 Score=108.63 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=62.4
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 32 LRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
.+-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.+++++ . +++++|+. ..+.+.+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999998753 3 45555543 2456666
Q ss_pred ---CeEEEEeCCeE
Q 013741 103 ---DDLLLLSNGET 113 (437)
Q Consensus 103 ---d~v~~L~~G~~ 113 (437)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 67899999985
No 417
>PRK01156 chromosome segregation protein; Provisional
Probab=98.99 E-value=3.1e-09 Score=119.79 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=66.5
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-C-CEEEEEecCCchHHHhh
Q 013741 31 HLRGISSGEKKRLSI------SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D-G-RIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 31 ~~~~lSgGerkRv~i------a~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~-g-~tvi~t~hqp~~~i~~~ 101 (437)
.+..||||||+|+++ |++++.+|++++|||||+|||+.....+.+.++.... . | .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 4888999999999999999999999999999986543 3 3 48999999974 5578
Q ss_pred cCeEEEEe
Q 013741 102 FDDLLLLS 109 (437)
Q Consensus 102 fd~v~~L~ 109 (437)
+|+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 418
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.97 E-value=9.4e-10 Score=108.51 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK-CIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~-~l~~~g~ 85 (437)
.+.++..++.+.|.|...-.-|+-..-.||-|||||++.-.+++-+-+|+++||=-+.-||.-+....+.+- .+++.|+
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 357888999999887654444444456799999999999999999999999999999999999999987654 5566899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
||+.++|+. .-|..+||++.+.+|+++..-+
T Consensus 501 TI~aIsHDd--~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 501 TIFAISHDD--HYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred eEEEEecCc--hhhhhHHHHHHHhcCceeeccc
Confidence 999999995 4689999999999999987643
No 419
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.95 E-value=3.7e-09 Score=98.47 Aligned_cols=115 Identities=16% Similarity=0.052 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013741 315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALI 394 (437)
Q Consensus 315 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~ 394 (437)
+.+.++++|.+..++..++.+++...+.|++.|++.+ +++.+++.+++...+..+++.++++.+++...+ .+....
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567799999999999999999999999999999874 566667777777778888999999998876543 333444
Q ss_pred HHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhh
Q 013741 395 VLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMED 435 (437)
Q Consensus 395 ~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~N 435 (437)
.+.++++|.+.|.+.+|.| ++| +.+++|++|+.+++-.+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~-~~~-i~~~~P~t~~~~~~r~~ 172 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAF-FQA-IHPFLPMTYSVNGLRQL 172 (208)
T ss_pred HHHHccCCCccchhhCHHH-HHH-hhhhCcHHHHHHHHHHH
Confidence 5566678988999999985 899 99999999999998543
No 420
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=2.7e-09 Score=124.31 Aligned_cols=69 Identities=23% Similarity=0.238 Sum_probs=61.1
Q ss_pred CCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCchHHHhh
Q 013741 33 RGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-----DGRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 33 ~~lSgGerk------Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~t~hqp~~~i~~~ 101 (437)
..||||||+ |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.++|+++|++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 469999999 99999999999999999999999999999999999988742 4789999999974 56665
Q ss_pred c
Q 013741 102 F 102 (437)
Q Consensus 102 f 102 (437)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 421
>PRK15066 inner membrane transport permease; Provisional
Probab=98.90 E-value=1.1e-07 Score=91.74 Aligned_cols=202 Identities=15% Similarity=0.145 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHH----hhh-hhhh
Q 013741 224 WKQLCILSHRSFLNMLRDMGY-YWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICL----SVG-GLPS 297 (437)
Q Consensus 224 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~----~~~-~~~~ 297 (437)
|+-++.+.+|+.+...||+.. ...-+++.++..++.|.++-....+..+. ....|++.+.+... +.. ....
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~---~y~~fl~pGll~~~~~~~~~~~~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF---SYMQFIVPGLIMMSVITNSYSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999854 33345556667777776653210110111 11222222222211 111 1122
Q ss_pred HHHHHHH-hhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013741 298 FIEEHKA-SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV 376 (437)
Q Consensus 298 ~~~er~v-~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i 376 (437)
+..+|.. ..++...---++..+.+++++...-..++..++..++.+...|.+.. ....+...+++........+.++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233311 01111111247778899999987766666655555555444466543 22222222223223233457888
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741 377 ALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI 432 (437)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l 432 (437)
+.+.++......+.+.+..+++..||.+.|.+++|.+ ++| +.++||+.|..|++
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~-l~~-i~~~nPlt~~v~~~ 215 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPF-WQG-VSKLNPIVYMVNAF 215 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHH-HHH-HHHHCcHHHHHHHH
Confidence 8888888887888888888899999999999999984 677 99999999999875
No 422
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3.6e-09 Score=105.39 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+...+.|-.+||...++|. .++.||||||-||++|.--++.|+||+|||||++||..+...+.+.|.+. .-.|
T Consensus 682 q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgV 754 (807)
T KOG0066|consen 682 QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGV 754 (807)
T ss_pred HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcE
Confidence 3456678888998888774 35789999999999999999999999999999999999999888888764 3478
Q ss_pred EEEecCCc
Q 013741 88 VCSIHQPS 95 (437)
Q Consensus 88 i~t~hqp~ 95 (437)
|+++|+-+
T Consensus 755 i~VsHDeR 762 (807)
T KOG0066|consen 755 IMVSHDER 762 (807)
T ss_pred EEEecccc
Confidence 88999854
No 423
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.86 E-value=3.3e-09 Score=122.45 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=66.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 013741 31 HLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL 106 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~ 106 (437)
.+..||||||+|++||++++ .+|++++|||||+|||+.....+.+.|+.+++. .++|+++|+|. ....+|+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChh--HHHHhhhHe
Confidence 45689999999999999985 577999999999999999999999999998754 78999999976 457799998
Q ss_pred EEe
Q 013741 107 LLS 109 (437)
Q Consensus 107 ~L~ 109 (437)
...
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
No 424
>PRK00064 recF recombination protein F; Reviewed
Probab=98.84 E-value=7.7e-09 Score=104.64 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=65.2
Q ss_pred ccCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741 31 HLRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~ 101 (437)
....+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+.+.++++ +..+++|+|++. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 34579999999999999885 799999999999999999999999988764 357888888764 34444
Q ss_pred c--CeEEEEeCCeE
Q 013741 102 F--DDLLLLSNGET 113 (437)
Q Consensus 102 f--d~v~~L~~G~~ 113 (437)
+ +++..+.+|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 47888999986
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.82 E-value=1.4e-08 Score=94.42 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
..+++++| |++.+.+++.+|+++++||||+|+|+.....+.. .++.+.+.+.++|+++|++ ++.+.+|++..+..|
T Consensus 90 s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~ 166 (202)
T cd03243 90 STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNL 166 (202)
T ss_pred eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEE
Confidence 34555554 5777788899999999999999999999888765 5677777789999999984 577789999999999
Q ss_pred eEEEeeChh
Q 013741 112 ETIYFGDAK 120 (437)
Q Consensus 112 ~~v~~G~~~ 120 (437)
++...++..
T Consensus 167 ~~~~~~~~~ 175 (202)
T cd03243 167 HMEELITTG 175 (202)
T ss_pred EEEEEecCC
Confidence 999888653
No 426
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.82 E-value=1.2e-08 Score=92.79 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
+|-+++++.|.+.-. .....+|-||||||.|++.|+..=++|+|||-|-.||..++..+.+.+|+-++ .|.|
T Consensus 128 ~Rre~LI~iLDIdl~-------WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 128 ERREKLIDILDIDLR-------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred hHhhhhhhheeccce-------EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 455666777665421 12345899999999999999999999999999999999999999999999887 6899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
||-.+|-= +-+..-..++..++.|+++-.-+.++..+
T Consensus 201 IVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 201 IVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred EEEEeeec-cchhhcchhEEEecCCeeeeccccchhhh
Confidence 99999974 34666678999999999998666665544
No 427
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.79 E-value=8.8e-09 Score=119.05 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=68.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 013741 31 HLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL 106 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~ 106 (437)
.+..||||||++++||..++. .|++++||||++|||+..+..+.+.|++++.. ..+|+++|++. ....+|+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 67999999999999999999999999998654 67899999974 678999999
Q ss_pred EEeC
Q 013741 107 LLSN 110 (437)
Q Consensus 107 ~L~~ 110 (437)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8863
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.77 E-value=6e-09 Score=95.51 Aligned_cols=79 Identities=20% Similarity=0.192 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
..+|+|++|...+. ..+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|.+ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 35777666533333 334599999999999999999887765 567778774 88999999996 57787775333334
Q ss_pred CeEE
Q 013741 111 GETI 114 (437)
Q Consensus 111 G~~v 114 (437)
++..
T Consensus 137 ~~~~ 140 (185)
T smart00534 137 LHMS 140 (185)
T ss_pred EEEE
Confidence 4433
No 429
>PRK02224 chromosome segregation protein; Provisional
Probab=98.76 E-value=2.1e-08 Score=112.95 Aligned_cols=77 Identities=29% Similarity=0.361 Sum_probs=66.4
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEecCCchHH
Q 013741 32 LRGISSGEKK------RLSISIEILTQ-----P-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVVCSIHQPSSHL 98 (437)
Q Consensus 32 ~~~lSgGerk------Rv~ia~~l~~~-----p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~t~hqp~~~i 98 (437)
+..||||||+ |++++++++.+ | .++++||||+|||+.....+.+.|+.++..|. +||+++|++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 88888888863 3 67999999999999999999999999987664 7999999974 4
Q ss_pred HhhcCeEEEEeC
Q 013741 99 FYLFDDLLLLSN 110 (437)
Q Consensus 99 ~~~fd~v~~L~~ 110 (437)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 567999999974
No 430
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.6e-09 Score=105.44 Aligned_cols=104 Identities=22% Similarity=0.354 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
.+...+|..||.+.- ..+.+...+|||=|-||++||+|...|.+|.|||||+.||-.....+-+.|+.+. +|.
T Consensus 390 arARRILAGLGFskE----MQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTL 462 (807)
T KOG0066|consen 390 ARARRILAGLGFSKE----MQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTL 462 (807)
T ss_pred hHHHHHHhhcCCChh----HhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---hee
Confidence 455667777777532 2334456799999999999999999999999999999999999999999999886 499
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEE-eeCh
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIY-FGDA 119 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~-~G~~ 119 (437)
++++|+- ..+-..|..|+.|++-++-| .|..
T Consensus 463 LIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 463 LIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred EEEeccc-chHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999984 57889999999999777654 3544
No 431
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.71 E-value=6e-08 Score=100.03 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++...|+..+|+|..+..=|= ..-..||+||+||++.||.+.++|++-+|||.||.+|-.....+.+.+++
T Consensus 537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~- 615 (659)
T KOG0060|consen 537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE- 615 (659)
T ss_pred HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH-
Confidence 45677788888888877643221 13467999999999999999999999999999999999888888877765
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeE
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLS-NGET 113 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~ 113 (437)
.|.|.|-+.|.++ +.+.=|.++-|+ +|+.
T Consensus 616 --~giT~iSVgHRkS--L~kfHd~~L~~~g~g~w 645 (659)
T KOG0060|consen 616 --MGITFISVGHRKS--LWKFHDYVLRMDGRGSW 645 (659)
T ss_pred --cCCeEEEeccHHH--HHhhhhEEEEecCCCce
Confidence 5899999999976 444447777776 3443
No 432
>PRK14079 recF recombination protein F; Provisional
Probab=98.64 E-value=6.3e-08 Score=97.53 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741 33 RGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd 103 (437)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.|. .+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~~-----~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAPP-----GAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCCC-----CCc
Confidence 357999999999999998 899999999999999999999999888653 256666666554 589
Q ss_pred eEEEEeCCeEEE
Q 013741 104 DLLLLSNGETIY 115 (437)
Q Consensus 104 ~v~~L~~G~~v~ 115 (437)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988643
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.62 E-value=3.4e-07 Score=85.98 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+.+.+.++..++... .+|||||++++||.-|+ .+.++++||||.++||...+..+.+.|+++.++
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~ 189 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ 189 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445566666665432 59999999999986663 466899999999999999999999999998754
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
.-+|+++|++ .++..+|+.+-+.
T Consensus 190 -~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 190 -SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -cccccccccc--ccccccccccccc
Confidence 6788899995 5889999888764
No 434
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=8e-08 Score=97.26 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 33 RGISSGEKKRLSISIEILT---------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~---------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
..+|.||+|++.+|..|+. +|+|++||||+++||...+..+++.|++. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 679999999864
No 435
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.50 E-value=4.3e-07 Score=102.52 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=73.7
Q ss_pred cccccccCc--ccCCCCHHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013741 22 CAETKIGNW--HLRGISSGEKKRLSISIEIL------TQ--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91 (437)
Q Consensus 22 ~~~~~vg~~--~~~~lSgGerkRv~ia~~l~------~~--p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~ 91 (437)
..+...|+. .+..|||||+-.++||.+|+ .+ -+.+||||||..||+.....+++.|..+...+++|++++
T Consensus 801 ~~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIIS 880 (908)
T COG0419 801 VVVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIIS 880 (908)
T ss_pred EEEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 344445544 67789999999888877663 45 689999999999999999999999999999999999999
Q ss_pred cCCchHHHhhcCeEEEEeC
Q 013741 92 HQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 92 hqp~~~i~~~fd~v~~L~~ 110 (437)
|++ ++.+.+|.++.+.+
T Consensus 881 H~e--el~e~~~~~i~V~k 897 (908)
T COG0419 881 HVE--ELKERADVRIRVKK 897 (908)
T ss_pred ChH--HHHHhCCeEEEEEe
Confidence 995 67889999999874
No 436
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.49 E-value=2.1e-07 Score=86.62 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
+.+|+|+||+ +.+..++++|++++||||++|+|+.....+. ..++.+.+.|.++|+++|.. ++.+.+
T Consensus 90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 4588888865 5667788999999999999999998766654 56888888899999999985 344443
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.49 E-value=3.3e-07 Score=83.44 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=65.8
Q ss_pred cccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCEEEEEecCCch----
Q 013741 30 WHLRGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLD---SASAFFVIQVLKCIALDGRIVVCSIHQPSS---- 96 (437)
Q Consensus 30 ~~~~~lSgGerk------Rv~ia~~l~~~p~ll~lDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~---- 96 (437)
..+..+|+|+++ +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 345578999988 4444455667999999999999999 888888889999998889999999998653
Q ss_pred ----HHHhhcCeEEEEe
Q 013741 97 ----HLFYLFDDLLLLS 109 (437)
Q Consensus 97 ----~i~~~fd~v~~L~ 109 (437)
.+..++|.++.|.
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 2678899999987
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.48 E-value=4e-07 Score=90.70 Aligned_cols=100 Identities=26% Similarity=0.380 Sum_probs=82.6
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Q 013741 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVV 88 (437)
Q Consensus 10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi 88 (437)
..++|...||.+.- .-....+.||-|||.|+.||..+...|.+++.||--+.||..++..+.+-+.++++ .|.|++
T Consensus 486 AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 486 AVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 45678888886432 22234568999999999999999999999999999999999999999999999998 699999
Q ss_pred EEecCCchHHHhh-cCeEEEEeCCeE
Q 013741 89 CSIHQPSSHLFYL-FDDLLLLSNGET 113 (437)
Q Consensus 89 ~t~hqp~~~i~~~-fd~v~~L~~G~~ 113 (437)
+++|.|. -+-.+ -|+++++.-|.+
T Consensus 563 vvThrpE-v~~AL~PD~li~vgYg~v 587 (593)
T COG2401 563 VVTHRPE-VGNALRPDTLILVGYGKV 587 (593)
T ss_pred EEecCHH-HHhccCCceeEEeecccc
Confidence 9999984 34444 488888876654
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.47 E-value=2.8e-07 Score=92.06 Aligned_cols=97 Identities=25% Similarity=0.337 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
+..+++++.+.|.+..|.-+. .+||||-||.+||++-+.+.++...|||.+-||...+.+....++.+....+=|
T Consensus 192 ~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~Yi 266 (592)
T KOG0063|consen 192 DNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYI 266 (592)
T ss_pred ccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeE
Confidence 467789999999888887665 599999999999999999999999999999999999999999999999988999
Q ss_pred EEEecCCchHHHhhcCeEEEEeC
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
|++.|+.+ -+-.+.|-+..|.+
T Consensus 267 IVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 267 IVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred EEEEeech-HHHhhhcceeEEec
Confidence 99999975 45667788888874
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.44 E-value=1.1e-06 Score=81.63 Aligned_cols=71 Identities=25% Similarity=0.213 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh--cCeEEEE
Q 013741 37 SGEKKRLSISIEILT--QPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYL--FDDLLLL 108 (437)
Q Consensus 37 gGerkRv~ia~~l~~--~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~--fd~v~~L 108 (437)
..|++|+.-..+.+. +|+++++|||++|+|+..+..+.. .++++++.|.++|+++|++. .+..+ .+++..+
T Consensus 88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 456677777777777 999999999999999999987754 78888888899999999975 34333 3444443
No 441
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.42 E-value=2.7e-06 Score=75.43 Aligned_cols=128 Identities=16% Similarity=-0.024 Sum_probs=87.2
Q ss_pred HHHHHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 013741 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFS--HYCHFCLSLFCCVSIVETCMMVVA 377 (437)
Q Consensus 300 ~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~l~~~~~~~~~~~~~~~i~ 377 (437)
.|+..+.|-+..-. +++.++++|++...-..++..++..++.+. .|.+...+ ..+.+.+...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665554 789999999999998888888777777754 48876632 122222222333333344555555
Q ss_pred HhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741 378 LLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI 432 (437)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l 432 (437)
...++.+. ......++.++...||.+.|.+++|.| .+| +.+++|++|+.+++
T Consensus 94 ~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~w-lq~-ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 94 LRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDW-AQP-LIAHQPISPAIEAC 145 (152)
T ss_pred HHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHH-HHH-HHhhCCccHHHHHH
Confidence 55555543 333466677777888888999999984 788 99999999999986
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.42 E-value=7.9e-07 Score=83.45 Aligned_cols=64 Identities=33% Similarity=0.474 Sum_probs=54.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 32 LRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
...+|.|+||.+.+...+...+ .++++|||-++|++..+..+++.|+++++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567999999999998888877 899999999999999999999999988877789999999984
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.36 E-value=5.2e-07 Score=84.81 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCCCHHHHHH----HHHHHH--HHhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhc
Q 013741 33 RGISSGEKKR----LSISIE--ILTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 33 ~~lSgGerkR----v~ia~~--l~~~p~ll~lDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~f 102 (437)
..+|+|+.++ ..++.. .+.+|++++|||| |+++|.... ....++.+.+. +.++|+++|+. ++.++.
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~ 159 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELE 159 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHh
Confidence 3567776653 234444 4579999999999 888887542 23455566665 88999999994 688889
Q ss_pred CeEEEEeCCeEEEeeChhHH
Q 013741 103 DDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 103 d~v~~L~~G~~v~~G~~~~~ 122 (437)
|++.-+.+|++...+..++.
T Consensus 160 ~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 160 GKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hcCCCeEEEEEEEEeeCCeE
Confidence 98888888988877665543
No 444
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.32 E-value=8e-07 Score=103.67 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=51.8
Q ss_pred cCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 32 LRGISSGEKKRLS----ISIE--------ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 32 ~~~lSgGerkRv~----ia~~--------l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
..++|||||||+. +|.+ +..+|++++||||++|||+..+..+++.++++ |.++|+|+|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 4689999999996 4544 55899999999999999999999999999888 6889988876
No 445
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.28 E-value=7.5e-07 Score=91.10 Aligned_cols=85 Identities=25% Similarity=0.243 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCcccccccccCc----ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQACAETKIGNW----HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~----~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+..+.+|+.+.|+|.+..-.|=. .-.-||||||||+.+||.+-++|+.-+|||.||.........+.+..|+ .
T Consensus 582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~ 658 (728)
T KOG0064|consen 582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---A 658 (728)
T ss_pred HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---c
Confidence 45667788888887776554421 2346999999999999999999999999999999988877777776654 5
Q ss_pred CCEEEEEecCCc
Q 013741 84 GRIVVCSIHQPS 95 (437)
Q Consensus 84 g~tvi~t~hqp~ 95 (437)
|.+.+-++|+|+
T Consensus 659 gi~llsithrps 670 (728)
T KOG0064|consen 659 GISLLSITHRPS 670 (728)
T ss_pred CceEEEeecCcc
Confidence 889999999997
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.24 E-value=1.9e-06 Score=95.23 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. .++.+.+.|.++|+++|++. ......|+..+. +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-E
Confidence 456899999999999988 8999999999999999999988864 67788888899999999954 233334544433 4
Q ss_pred CeEEEe
Q 013741 111 GETIYF 116 (437)
Q Consensus 111 G~~v~~ 116 (437)
+.+.+.
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555553
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.23 E-value=1.4e-06 Score=87.15 Aligned_cols=96 Identities=21% Similarity=0.388 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~-~~g~t 86 (437)
+.+.++++-|.+++..|..+ ++|||||.|||+++..|-..+++++.|||.+-||+..+....+.+++.- +.++|
T Consensus 435 qF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt 509 (592)
T KOG0063|consen 435 QFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT 509 (592)
T ss_pred HHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch
Confidence 45778888888888777766 5799999999999999999999999999999999999999999998865 36789
Q ss_pred EEEEecCCchHHHhhcCeEEEEe
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
-.++-|+--- .-.++|||++..
T Consensus 510 afvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 510 AFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hhhhhhHHHH-HHhhcceeEEEe
Confidence 8999998422 224678887654
No 448
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.22 E-value=4e-05 Score=73.49 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH
Q 013741 317 AVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVA-LLVPNVLMGMGVGTALIV 395 (437)
Q Consensus 317 ~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~-~~~~~~~~a~~~~~~~~~ 395 (437)
..+++++.+...-...+...+...+..+..|. .....+..+...+.+......++|.+++ ....+...+..++..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666777766666666666666666666662 2334444455555555555556777555 366778888888888989
Q ss_pred HHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741 396 LMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM 433 (437)
Q Consensus 396 ~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~ 433 (437)
++..++|.+.|.+.+|.+ .+| +.+++|..|+.+++-
T Consensus 210 ~~~~l~g~~~p~~~~p~~-~~~-i~~~~P~t~~~~~~~ 245 (286)
T COG0842 210 PLGFLSGVFFPLELLPAW-LQG-ISYINPLTYAIDALR 245 (286)
T ss_pred HHHHHccccCchhhhHHH-HHH-HHHHccHHHHHHHHH
Confidence 999999999999999984 788 999999999999874
No 449
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.20 E-value=3.7e-06 Score=67.75 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=37.1
Q ss_pred ccCCCCHHHHH-HHHHHHHH------Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 31 HLRGISSGEKK-RLSISIEI------LT------QPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 31 ~~~~lSgGerk-Rv~ia~~l------~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
...++|||||| .+.++..+ -. .|++++||||+++||...+..+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 34679999994 44443333 22 3789999999999999999999999874
No 450
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.19 E-value=3.4e-06 Score=79.13 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc---CCEEEEEecCCc
Q 013741 34 GIS--SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD---GRIVVCSIHQPS 95 (437)
Q Consensus 34 ~lS--gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~~---g~tvi~t~hqp~ 95 (437)
++| .-|-||+++++.++.+|+++++|||++|+|+.....+ ...++++.+. +.++|+++|.+.
T Consensus 88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 455 5678999999999999999999999999999765544 5688888764 348999999964
No 451
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.06 E-value=6.9e-06 Score=90.63 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=57.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEecCCch
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
...+|+|+++++.|...+ .+|+++++|||++|+|+.....+ ...++.+++.|.++|+++|.+.-
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 457999999999998776 89999999999999999999998 57888888889999999999653
No 452
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=1.1e-05 Score=72.98 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..+||+|+.+..+....+.+|+++++||| ..++..+ ....+.+.++.+.|.++|+++|.. .+....|++..+.+|+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGR 152 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcE
Confidence 35899999999999999999999999995 2233333 445677777667789999999983 4567789999999999
Q ss_pred EEEee
Q 013741 113 TIYFG 117 (437)
Q Consensus 113 ~v~~G 117 (437)
++..-
T Consensus 153 i~~~~ 157 (174)
T PRK13695 153 VYELT 157 (174)
T ss_pred EEEEc
Confidence 87763
No 453
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.00 E-value=0.00058 Score=65.21 Aligned_cols=191 Identities=9% Similarity=0.051 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 013741 228 CILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASY 306 (437)
Q Consensus 228 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~-~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~~ 306 (437)
+.+.||.++.+.|.|..+..-.+..++.|+.. ..+.+. +....+..+..+.+.+......+ .+|.. --..+.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~p~l--~~~~ia 74 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPWVFLF----LIPAI--TMRSFA 74 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHHHHHH----HHHHH--HHHHHH
Confidence 46889999999999998877666666656432 222111 10111111222211111111111 11211 124456
Q ss_pred hccCCCCc--------chHHHHHHHHHHHhhHHHHHHH---hhhhhhhcccc--cccChHHHHHHHHHHHHHHHHHHHHH
Q 013741 307 RERISCHY--------GEAVFVLSNFLSSFPFLVILSI---SSGTILHYMVQ--FHPGFSHYCHFCLSLFCCVSIVETCM 373 (437)
Q Consensus 307 rE~~~g~Y--------~~~~y~la~~l~elP~~~~~~~---if~~i~Y~m~g--l~~~~~~f~~f~l~~~~~~~~~~~~~ 373 (437)
|||++|.. ++..+.++|.++-+-..++..+ ++....++... -..+.+.++...+..++...+..++|
T Consensus 75 ~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig 154 (240)
T TIGR03518 75 EERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIG 154 (240)
T ss_pred HHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66766653 4678899999987655443322 12222211111 11234444433344444445666899
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCc--ccccccccccccChhHHHHH
Q 013741 374 MVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDL--PKFFWQYPMSYITFAAWAIE 430 (437)
Q Consensus 374 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~w~w~~~yisp~~y~~e 430 (437)
.++++++.|...|..++..+.. .++.|+-. ..++ |.+ ..| +.|+||..|..+
T Consensus 155 ~~iSsl~~~q~~a~~~~~~~~~--~l~~~~~~-l~~~~~~~~-~~~-l~~~sp~~~~~~ 208 (240)
T TIGR03518 155 LFASSLTENQIVAFIIAVFLCF--LFYFGFDG-LASLLWGGS-AYT-ISELGLSYHYES 208 (240)
T ss_pred HHHHHHhchHHHHHHHHHHHHH--HHHHHHHH-HhhhcchhH-HHH-HHHcCHHHHHHH
Confidence 9999999998887655443322 22223211 2333 542 456 999999777554
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.00 E-value=7.2e-06 Score=76.65 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 013741 38 GEKKRLSISIEILTQPTVLLLDEPT-----SGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 38 GerkRv~ia~~l~~~p~ll~lDEPt-----sgLD~~~~~~i~~~l~~l~~ 82 (437)
-|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
No 455
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.82 E-value=4.7e-05 Score=73.84 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH------------hhcCeEEEEeCCe
Q 013741 45 ISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF------------YLFDDLLLLSNGE 112 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~------------~~fd~v~~L~~G~ 112 (437)
....+..+|+++++|||++. ..+...++.+ ++|.++|+|+|.+..+-. ..|||+++|++|+
T Consensus 187 ~~~i~~~~P~villDE~~~~------e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGRE------EDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcH------HHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 34444479999999999742 3344444444 469999999998654222 6799999999887
Q ss_pred EEEeeChhH
Q 013741 113 TIYFGDAKM 121 (437)
Q Consensus 113 ~v~~G~~~~ 121 (437)
..|.+++
T Consensus 260 --~~g~~~~ 266 (270)
T TIGR02858 260 --GPGTVEA 266 (270)
T ss_pred --CCCceee
Confidence 5565543
No 456
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.79 E-value=4e-05 Score=85.52 Aligned_cols=71 Identities=21% Similarity=0.146 Sum_probs=61.6
Q ss_pred HHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchH--------HHhhcCeEEEEeCCeEEEeeCh
Q 013741 49 ILTQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRIVVCSIHQPSSH--------LFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 49 l~~~p~ll~lDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~--------i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
+..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|+|... +.+.||.+++|.+|+....|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35799999999999999 79999999999999999899999999998642 2368999999999998776643
No 457
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=0.0052 Score=59.42 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHH---HH--hh
Q 013741 223 WWKQLCILSHRSFLNMLRDMG--YYWL---RIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLI---CL--SV 292 (437)
Q Consensus 223 ~~~Q~~~L~~R~~~~~~Rd~~--~~~~---r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~---~~--~~ 292 (437)
.++..+.|.+|.++...|+.. ..|. =+++.++++++.|.+.-.-+.+. ..+...+... +. ..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~--------~~~l~~G~~~w~f~~~~i~ 87 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNF--------LAYLLAGLILWFFFSEAIS 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--------HHHHHHHHHHHHHHHHHHH
Confidence 356778899999999888763 2332 23455555555555553321111 1111111111 11 11
Q ss_pred hhhhhHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHH
Q 013741 293 GGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETC 372 (437)
Q Consensus 293 ~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~ 372 (437)
.+...+.+..+++.|-+ .++..+.+++++.++-...+..++....+-+.-+.. + .++......+.+....+.++
T Consensus 88 ~~~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~ 161 (263)
T COG1682 88 EGAGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGL 161 (263)
T ss_pred hHHHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHH
Confidence 22334445555555431 278899999999988766666555444444444433 2 33444434444444455567
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741 373 MMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI 432 (437)
Q Consensus 373 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l 432 (437)
+.++|.++.-..-=.-+-+.++-+++..+|.+=+.+.+|.. ++| +.++||+.+-.|++
T Consensus 162 ~l~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~ 219 (263)
T COG1682 162 GLILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESF 219 (263)
T ss_pred HHHHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHH
Confidence 77777776433332334455667777889999999999986 889 99999999998874
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.65 E-value=0.00014 Score=69.26 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC--
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISI----------------EILTQPTVLLLDEPTS-- 63 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~----------------~l~~~p~ll~lDEPts-- 63 (437)
+.++..+|+..+...+++.+..+... ..+|+.+++.++. ....+|+++++| |++
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 45567788999988888665443322 2245555554433 235799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741 64 ----GLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS 95 (437)
Q Consensus 64 ----gLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~ 95 (437)
.+|+.....+++.|+++++ .|.+|+++.|..-
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999999999987 5889999999863
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.61 E-value=0.00014 Score=68.44 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhc-CCEEEEEecCCc
Q 013741 38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIALD-GRIVVCSIHQPS 95 (437)
Q Consensus 38 GerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~~~-g~tvi~t~hqp~ 95 (437)
.|-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+. +.++|+++|.+.
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 567888777788899999999999999999999999887 8888875 899999999964
No 460
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.59 E-value=0.00016 Score=68.63 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHh
Q 013741 35 ISSGEKKRLSISIEIL----TQPTVLLLDEPTSGL----DSASAFFVIQVLKCIALDGRIVVCSIHQPSS------HLFY 100 (437)
Q Consensus 35 lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgL----D~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~------~i~~ 100 (437)
+|++++++-.+...+- .+|+++++||||+++ |+....++.+.++++++.|.|+++|.|+... .+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 5666655544333222 379999999999999 7788889999999998888888887765421 1245
Q ss_pred hcCeEEEEe
Q 013741 101 LFDDLLLLS 109 (437)
Q Consensus 101 ~fd~v~~L~ 109 (437)
++|-++.|+
T Consensus 176 ~~DgvI~L~ 184 (230)
T PRK08533 176 AATMLIRLE 184 (230)
T ss_pred eeeEEEEEE
Confidence 567788776
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.49 E-value=0.00052 Score=65.08 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHhhcC
Q 013741 35 ISSGEKKRLSISIEILT--QPTVLLLDEPTSG---LDSASAFFVIQVLKCIALDGRIVVCSIHQPSS------HLFYLFD 103 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~--~p~ll~lDEPtsg---LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~------~i~~~fd 103 (437)
.+.++++.+....+++. +|+++++||||+. .|.....++++.++.+++.|.|+++++|++.. .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 46788999999999988 9999999999964 45555556666677777788999999998653 1566778
Q ss_pred eEEEEeC
Q 013741 104 DLLLLSN 110 (437)
Q Consensus 104 ~v~~L~~ 110 (437)
.++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 8887763
No 462
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.45 E-value=0.013 Score=56.35 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=55.9
Q ss_pred HHhhhccCCC--------CcchHHHHHHHHHHHhhHHHH---HHHhh-hh--hhhcccccccChHHHHHHHHHHHHHHH-
Q 013741 303 KASYRERISC--------HYGEAVFVLSNFLSSFPFLVI---LSISS-GT--ILHYMVQFHPGFSHYCHFCLSLFCCVS- 367 (437)
Q Consensus 303 ~v~~rE~~~g--------~Y~~~~y~la~~l~elP~~~~---~~~if-~~--i~Y~m~gl~~~~~~f~~f~l~~~~~~~- 367 (437)
..+.+|+++| =+++..++++|.++.+...++ ...+- .+ ......|.+.+...+....+.......
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3456666665 267899999999998877432 11111 11 111223445555555444333322222
Q ss_pred --HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 013741 368 --IVETCMMVVALLVPNVLMGMGVGTALIVLM 397 (437)
Q Consensus 368 --~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ 397 (437)
+..+++.++++++.+...|...+..+....
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 447899999999998888887766554444
No 463
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.44 E-value=5.6e-05 Score=72.49 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=63.4
Q ss_pred ccCCCCHHH--------HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741 31 HLRGISSGE--------KKRLSISIEILTQPTVLLLDEPTSGLDSASAFF-VIQVLKCIALDGRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 31 ~~~~lSgGe--------rkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~t~hqp~~~i~~~ 101 (437)
..+.+|||+ |||+++|+.+..+++|..| ||+.+|+.+... ++ +.++...+.|.|+.+|... ....
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCC
Confidence 345689999 9999999999899999999 999999655543 54 5555556789999999964 4678
Q ss_pred cCeEEEEeCCeE
Q 013741 102 FDDLLLLSNGET 113 (437)
Q Consensus 102 fd~v~~L~~G~~ 113 (437)
+|.|.+|..|+.
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999986
No 464
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.40 E-value=0.00041 Score=65.42 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhc
Q 013741 37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD-GRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~~-g~tvi~t~hqp~~~i~~~f 102 (437)
..|-+|++-...-+++|+++++|||.+|.|+.....+ ...++.+.+. +.++|+++|.+. +.++.
T Consensus 95 ~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 95 MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 3577888888888899999999999999998777765 5677888775 889999999964 44443
No 465
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.37 E-value=0.00052 Score=62.16 Aligned_cols=68 Identities=24% Similarity=0.399 Sum_probs=54.6
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 27 IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 27 vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
+|+.....-|.||-=- .|-..-..+.-+++||||-++|.+.-+..+...|+++++.|.-+|+.+|.|-
T Consensus 122 ~~~~sLh~~SHGEsf~-~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFL-AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHH-HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3333344568888543 3333445678899999999999999999999999999999999999999983
No 466
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.35 E-value=4.4e-05 Score=75.01 Aligned_cols=127 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHhhhc--cCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccc---cccChHHHHHHHHHHHHHHHHHHHHH
Q 013741 299 IEEHKASYRE--RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQ---FHPGFSHYCHFCLSLFCCVSIVETCM 373 (437)
Q Consensus 299 ~~er~v~~rE--~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~g---l~~~~~~f~~f~l~~~~~~~~~~~~~ 373 (437)
..||.-=.+| +..| -++..|.+++.+..+...++..++..++ +.| ++.+ +++..++.+++...+..+++
T Consensus 183 ~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 256 (344)
T PF12698_consen 183 VEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFG 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHH
Confidence 4555443333 3555 4888999999999999988888776664 334 4433 44444555666666777899
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741 374 MVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM 433 (437)
Q Consensus 374 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~ 433 (437)
.+++.++++...|..+++++..+.+.++|.+.+.+++|.+ ++| +.++.|..|..+++.
T Consensus 257 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~~~P~~~~~~~~~ 314 (344)
T PF12698_consen 257 FLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSF-LQW-ISSFLPFYWFIQGLR 314 (344)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH-HHH-HHHHhhHHHHHHHHH
Confidence 9999999999998877777777566666666778888875 788 888889999887763
No 467
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.31 E-value=0.042 Score=53.26 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741 366 VSIVETCMMVVALLV---PNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI 432 (437)
Q Consensus 366 ~~~~~~~~~~i~~~~---~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l 432 (437)
...+.++|+++|++. |+.+- +.+.++.+++..+|.+-+.+.+|.. +++ +.+.||+.+..|+.
T Consensus 159 ~l~~~glglils~l~v~~rDi~~---i~~~~l~~lf~~SpI~y~~~~vp~~-~~~-il~~NPl~~~ie~~ 223 (264)
T PRK15176 159 WLLGLSFGYFCDALSERFPLVYK---AVPVMLRPMFLISAVFYTANELPYS-LLS-IFSWNPLLHANEIV 223 (264)
T ss_pred HHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHhhHhhhHHhCcHH-HHH-HHHHCcHHHHHHHH
Confidence 334446666666654 54433 3355667777888988888999985 777 88999999998864
No 468
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.28 E-value=0.00077 Score=59.03 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTS----------GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~ 97 (437)
-+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.++|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45566677788888889999999999994 5555555666666656555789999999997654
No 469
>PF13175 AAA_15: AAA ATPase domain
Probab=97.19 E-value=0.00088 Score=68.51 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=55.1
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741 31 HLRGISSGEKKRLSISIEIL------TQ-PT---VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS 95 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~------~~-p~---ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~ 95 (437)
.....|.|+|+.+.++..+. .+ +. ++++|||-+.|.+..+..+++.|++++. .+..||+|||.|.
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 44678999999988876652 12 22 9999999999999999999999999998 6789999999983
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.04 E-value=0.0012 Score=74.19 Aligned_cols=52 Identities=25% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 45 ISIEILTQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|+|..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567788999999999999999 7999999999999999989999999999864
No 471
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=96.99 E-value=0.05 Score=51.06 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhh-HHHHHHHHHHHHHhhhhhhhHHHHHHHh
Q 013741 227 LCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRP-KCVAFIYGFLICLSVGGLPSFIEEHKAS 305 (437)
Q Consensus 227 ~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~-~~l~f~~~~~~~~~~~~~~~~~~er~v~ 305 (437)
++.++||.++.-+|++.....-+...+..-.+... -++.+.+....-. |.+..+..+....+ + ...|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~---al~~~~~~l~~~~~gllWi~~lfa~~l~---~------~r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSF---ALGPDPDLLARVAPGLLWIALLFASLLG---L------NRSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHh---hcCCchhHHHHHhHHHHHHHHHHHHHHH---h------hHhH
Confidence 46789999999999987655554444443333333 3444433322222 33322222221111 1 2337
Q ss_pred hhccCCCC--------cchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013741 306 YRERISCH--------YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVA 377 (437)
Q Consensus 306 ~rE~~~g~--------Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~ 377 (437)
.+|+++|. .++.+.+++|.+...-...+..++..-+...+-|++. .....+.+++.+........|.+.+
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a 146 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA 146 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777764 1456799999999876665555554444444556554 4455555555555555555666656
Q ss_pred Hhc
Q 013741 378 LLV 380 (437)
Q Consensus 378 ~~~ 380 (437)
+++
T Consensus 147 al~ 149 (215)
T PF03379_consen 147 ALA 149 (215)
T ss_pred HHH
Confidence 554
No 472
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.73 E-value=0.0051 Score=59.98 Aligned_cols=67 Identities=28% Similarity=0.470 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 33 RGISSGEKKRLSISIEILT--QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~--~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
+.||-|+.|-++++.+|.. .|.+++||||-++|-+..-..+...+++-++.+ -|++++|.|+ +.+.+
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r--Ll~~~ 337 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR--LLNAV 337 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH--HHhhc
Confidence 5899999999999999986 678999999999999999999999999988765 7889999864 44444
No 473
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0053 Score=64.58 Aligned_cols=75 Identities=23% Similarity=0.408 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741 33 RGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~----p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
+--||||--|+.+|...+.. ...|++||--+|+--..+..|-+.|++|++. .-|+|+||+|. +..+.|.=+..
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~-~QVl~VTHlPQ--VAa~ad~H~~V 506 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEH-HQVLCVTHLPQ--VAAMADTHFLV 506 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcC-ceEEEEecHHH--HHhhhcceEEE
Confidence 56799999999998776542 3489999999999999999999999999874 67999999984 77788876666
Q ss_pred eC
Q 013741 109 SN 110 (437)
Q Consensus 109 ~~ 110 (437)
++
T Consensus 507 ~K 508 (557)
T COG0497 507 EK 508 (557)
T ss_pred EE
Confidence 54
No 474
>PF13166 AAA_13: AAA domain
Probab=96.43 E-value=0.021 Score=63.09 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCcccccccc------------cCcccCCCCHHHHHHHHHHHHH--Hh-------CCCEEEEeCCCCCCC
Q 013741 8 DIVEETIIKMGLQACAETKI------------GNWHLRGISSGEKKRLSISIEI--LT-------QPTVLLLDEPTSGLD 66 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~v------------g~~~~~~lSgGerkRv~ia~~l--~~-------~p~ll~lDEPtsgLD 66 (437)
+++.+.|+.+|..+..=... |....+.||-|||+-++++-=| +. +..++++|.|-|.||
T Consensus 462 ~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD 541 (712)
T PF13166_consen 462 DRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLD 541 (712)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCC
Confidence 46677788887554221111 1123468999999999997533 22 568999999999999
Q ss_pred HHHHHHHHHHHHHHH--hcCCEEEEEecCC
Q 013741 67 SASAFFVIQVLKCIA--LDGRIVVCSIHQP 94 (437)
Q Consensus 67 ~~~~~~i~~~l~~l~--~~g~tvi~t~hqp 94 (437)
......+.+.|+++. ...+-||+.||..
T Consensus 542 ~~~~~~v~~~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 542 HNRRFGVASRLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred HHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence 999999999999997 5567899999984
No 475
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.27 E-value=0.006 Score=71.05 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741 33 RGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
..||||||--++||.-++ ...++.+|||--++||..+...+.++|++.+ ++.-.|++||++. .+..+|+++-.
T Consensus 1065 ~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~--~m~~ad~l~GV 1141 (1163)
T COG1196 1065 SLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG--TMEAADRLVGV 1141 (1163)
T ss_pred hhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH--HHHHHHHHeee
Confidence 469999999999987664 3457999999999999999999999999998 5567888889864 67778876644
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.25 E-value=0.00066 Score=71.53 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-------H-Hhhc
Q 013741 33 RGISSGEKKRLSIS--IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH-------L-FYLF 102 (437)
Q Consensus 33 ~~lSgGerkRv~ia--~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~-------i-~~~f 102 (437)
+.+|+|++|||.|+ .++..+|+.. ...+..+.+.++.+++.|.|+++++|++... + ..++
T Consensus 114 ~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~la 183 (484)
T TIGR02655 114 YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVS 183 (484)
T ss_pred HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEee
Confidence 45788888888888 5555555433 4677888999999988999999999986421 2 5678
Q ss_pred CeEEEEe
Q 013741 103 DDLLLLS 109 (437)
Q Consensus 103 d~v~~L~ 109 (437)
|.|+.|+
T Consensus 184 DgVI~L~ 190 (484)
T TIGR02655 184 DNVVILR 190 (484)
T ss_pred eeEEEEE
Confidence 9999997
No 477
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.24 E-value=0.0095 Score=66.86 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=49.6
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCch--------HHHhhcCeEEEEeC
Q 013741 49 ILTQPTVLLLDEPTSGLD-SASAFFVIQVLKCIALDGRIVVCSIHQPSS--------HLFYLFDDLLLLSN 110 (437)
Q Consensus 49 l~~~p~ll~lDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~--------~i~~~fd~v~~L~~ 110 (437)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|.|.. .+.+.++-.++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 346899999999999999 788999999999999889999999999752 24445555555544
No 478
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.0037 Score=68.28 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741 33 RGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~---~p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~ 107 (437)
..||||||--|++|.-++. +| +.+++||.-+.||+..+..|..+|++|+.. .-.|||+-.| ++...+|+.+=
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp--Ell~vAdKfyg 1171 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP--ELLSVADKFYG 1171 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH--HHHHHHHhhhc
Confidence 4799999999999877754 45 689999999999999999999999999987 6788999887 67888887653
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.09 E-value=0.0062 Score=60.38 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 43 LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 43 v~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
-.+..+|-.+|+++++|||.+ .+..+.++.+...+.+++.|+|.++ ..+..||+..|..|+....|.+.+.
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 356667889999999999996 3456667776644456799999976 5666899999999998888877765
Q ss_pred H
Q 013741 123 V 123 (437)
Q Consensus 123 ~ 123 (437)
.
T Consensus 280 ~ 280 (308)
T TIGR02788 280 I 280 (308)
T ss_pred H
Confidence 4
No 480
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.81 E-value=0.027 Score=58.44 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=66.9
Q ss_pred CCCHHHHHHHH-----HHHHHH-hCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--cCC
Q 013741 34 GISSGEKKRLS-----ISIEIL-TQPT-VLLLD-----------------EP--TSGLDSASAFFVIQVLKCIAL--DGR 85 (437)
Q Consensus 34 ~lSgGerkRv~-----ia~~l~-~~p~-ll~lD-----------------EP--tsgLD~~~~~~i~~~l~~l~~--~g~ 85 (437)
.=|.++|-|.. +|.=+. ..-+ ++++| || |+|+|+.....+.+.++++.. +|.
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 45788888743 444442 2334 46788 75 789999999999999999984 675
Q ss_pred -----EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 86 -----IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 86 -----tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
||++..|+.+. ..+|++..+.+|+++..++..+
T Consensus 303 IT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 303 ITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred eeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 99999999763 7799999999999999998763
No 481
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.71 E-value=0.023 Score=62.19 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=41.2
Q ss_pred cCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecC
Q 013741 32 LRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hq 93 (437)
+..||||||+-+++|..++. +.++ ++|||++.||+.-+..+++ .+.++ ..-||+.+|+
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d 613 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTD 613 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEech
Confidence 45799999999766554432 2344 5699999999999999885 66553 3455555566
No 482
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=95.53 E-value=0.86 Score=42.57 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=73.3
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHh-cCCCCChhhHhhhhHHHHHHHH-HHHHHhhhhhhhHHHHHHHhhhc
Q 013741 231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILY-LNVGLSNPAIYGRPKCVAFIYG-FLICLSVGGLPSFIEEHKASYRE 308 (437)
Q Consensus 231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f-~~~~~~~~~i~~r~~~l~f~~~-~~~~~~~~~~~~~~~er~v~~rE 308 (437)
.+|.++.-+|++.....-+ ++.+++-++| +..+.+.+-.+.-...++.+.. +....+ -...|.+|
T Consensus 2 ~~kDl~l~~r~~~~~~~~l----lF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~---------l~rlF~~d 68 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPL----WFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLS---------LDRLFRDD 68 (211)
T ss_pred cHHHHHHHHcccchHHHHH----HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHH
Confidence 5888999999877544333 3444444444 4455554434333333333322 222211 13457777
Q ss_pred cCCCC--------cchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013741 309 RISCH--------YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLV 380 (437)
Q Consensus 309 ~~~g~--------Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~ 380 (437)
+++|. .++...+++|.++..-...+.-++..-+.-.+-|++. .....+.+.+.+.......+|-+.++++
T Consensus 69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt 146 (211)
T TIGR01190 69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALT 146 (211)
T ss_pred HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77773 3667888999998754444433333333333555554 3345566666665555556666666654
No 483
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=95.48 E-value=1.9 Score=41.54 Aligned_cols=170 Identities=17% Similarity=0.182 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhc-CCCCC--hhhHhhhh-HHHHHHHHHHHHHhhhhhhhHHHH
Q 013741 226 QLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYL-NVGLS--NPAIYGRP-KCVAFIYGFLICLSVGGLPSFIEE 301 (437)
Q Consensus 226 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~-~~~~~--~~~i~~r~-~~l~f~~~~~~~~~~~~~~~~~~e 301 (437)
++..+.++.++...|+|..+..-....++.++.....+. ..... ..+..... ....+...+..+.. +-....-
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 79 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLP---LLAILLG 79 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHH---HHHHHHc
Confidence 577889999999999998877766555555555555552 11110 00000000 11000111111111 0011112
Q ss_pred HHHhhhccCCCC--------cchHHHHHHHHHHHhhHHHHHHHhhh---hhhhcccccccCh---HHHHHHHHHHHHHHH
Q 013741 302 HKASYRERISCH--------YGEAVFVLSNFLSSFPFLVILSISSG---TILHYMVQFHPGF---SHYCHFCLSLFCCVS 367 (437)
Q Consensus 302 r~v~~rE~~~g~--------Y~~~~y~la~~l~elP~~~~~~~if~---~i~Y~m~gl~~~~---~~f~~f~l~~~~~~~ 367 (437)
-.++.+|+.+|. .++.--.++|.+.-+-..++..++.. ...+...|...+. ..+..+....++...
T Consensus 80 ~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (278)
T COG1277 80 ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGL 159 (278)
T ss_pred cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence 345567777664 45667778998887665555444444 2234444444432 344455555555556
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 013741 368 IVETCMMVVALLVPNVLMGMGVGTALIVLMM 398 (437)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~ 398 (437)
+..+++.+++....+...+..++..+...+.
T Consensus 160 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 190 (278)
T COG1277 160 VLLSISLLISSLFSSSSLALLVSIILLLLFI 190 (278)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 6667888899998887777766655444443
No 484
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.20 E-value=0.03 Score=63.77 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=49.0
Q ss_pred CCHHHH------HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecC
Q 013741 35 ISSGEK------KRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-----DGRIVVCSIHQ 93 (437)
Q Consensus 35 lSgGer------kRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~t~hq 93 (437)
.|-||| =|+++|..+..+..+|=|||||++||......+...|.++-+ .+.-.|+++|+
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence 599998 578889999999999999999999999998888877766543 24467777887
No 485
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=95.02 E-value=0.063 Score=60.25 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=44.0
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 48 EILTQPTVLLLDEPTSGLD-SASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 48 ~l~~~p~ll~lDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
.+..+|.++++|||..+|| +..+..+.+.++.+++.|..+++++|.|..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3567999999999999999 888999999999999889999999999853
No 486
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.98 E-value=0.03 Score=57.80 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=61.5
Q ss_pred ccCCCCHHHHHHHHHHHHHH-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741 31 HLRGISSGEKKRLSISIEIL-------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~-------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd 103 (437)
...+-|.|+|+|+..+...+ .++-++++|+||++.|+. .++-..+.+....|.+..+.+|.+ .+ ++
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~E 290 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LE 290 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HH
Confidence 34578999999999988877 789999999999999996 555556666655688888888853 34 44
Q ss_pred eEEEEeCCeEEEeeCh
Q 013741 104 DLLLLSNGETIYFGDA 119 (437)
Q Consensus 104 ~v~~L~~G~~v~~G~~ 119 (437)
|.-...+|.+...+..
T Consensus 291 Rag~~~~GSiT~~~tv 306 (432)
T PRK06793 291 RSGKTQKGSITGIYTV 306 (432)
T ss_pred HhccCCCcceEEEEEE
Confidence 4444578887776654
No 487
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=94.97 E-value=0.088 Score=59.37 Aligned_cols=76 Identities=25% Similarity=0.202 Sum_probs=52.5
Q ss_pred ccccC--cccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCch
Q 013741 25 TKIGN--WHLRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSS 96 (437)
Q Consensus 25 ~~vg~--~~~~~lSgGerkRv~ia~~l--~~~p~ll~lDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~ 96 (437)
|.+|. ...+|.|-=+.-...++..| +++++++++||| |+.+|..+ .....++.+.+. |.++++++|. .
T Consensus 655 triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~ 730 (854)
T PRK05399 655 TRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY--H 730 (854)
T ss_pred eccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--H
Confidence 44553 23456776555555555554 559999999999 88888433 455567777765 5889999999 4
Q ss_pred HHHhhcCe
Q 013741 97 HLFYLFDD 104 (437)
Q Consensus 97 ~i~~~fd~ 104 (437)
++.+++|+
T Consensus 731 el~~l~~~ 738 (854)
T PRK05399 731 ELTELEEK 738 (854)
T ss_pred HHHHHhhh
Confidence 67777765
No 488
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.96 E-value=0.052 Score=56.56 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=66.5
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEeeChhH------H
Q 013741 51 TQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKM------A 122 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~-~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~-~L~~G~~v~~G~~~~------~ 122 (437)
.+|++|++|||...+|.. ....+...+..+.+.|+.+|++++++..++-.+.|++. -+..|-++...+++. +
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 379999999999988765 45678888988888888888877544456666666654 356788888888753 1
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHhhccCcc
Q 013741 123 VKFFAEAGFPCPSRRNPSDHFLRCINSDFD 152 (437)
Q Consensus 123 ~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~ 152 (437)
....+..+...|+ +..+|+.+.+..+.+
T Consensus 273 ~~~~~~~~~~l~~--ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 273 RKMLEIEHGELPE--EVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHhcCCCCCH--HHHHHHHhccccCHH
Confidence 2233334555443 345666655544433
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.90 E-value=0.042 Score=50.77 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
.+..+|..+|+++++|||. |..+.. ...+.+..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~----~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR----LALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH----HHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5678888999999999996 555433 33345667899999999975 346789987664
No 490
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.64 E-value=0.02 Score=52.30 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch-HHHhhcCeEEEEeCC
Q 013741 37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS-HLFYLFDDLLLLSNG 111 (437)
Q Consensus 37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~-~i~~~fd~v~~L~~G 111 (437)
-|+-.|..+|..+..+|+.+..+| +.+||....++.+.+++...+|.+|++.+|.... .+...||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999888776 8999999999999998887667899999988632 366789999887643
No 491
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.033 Score=62.29 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=63.0
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741 32 LRGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~---~p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~ 107 (437)
+..||||||-.-|+|..++. +| +++++||.-+.||-.+.-.|.+.+++-.+.-+=||++. +..+|++.||++=
T Consensus 1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISL---RnnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISL---RNNMFELANRLVG 1269 (1293)
T ss_pred cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEe---hhhHHHHHhhhee
Confidence 35799999999999888765 45 79999999999999999999999998766555566664 4679999999988
Q ss_pred Ee
Q 013741 108 LS 109 (437)
Q Consensus 108 L~ 109 (437)
++
T Consensus 1270 IY 1271 (1293)
T KOG0996|consen 1270 IY 1271 (1293)
T ss_pred eE
Confidence 76
No 492
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=93.92 E-value=1.4 Score=44.94 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhhhhccccccc--Ch--HHHHHHHHHHHHHHHHHHHHH-HHHHHhccchHHHHHH
Q 013741 315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHP--GF--SHYCHFCLSLFCCVSIVETCM-MVVALLVPNVLMGMGV 389 (437)
Q Consensus 315 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~--~~--~~f~~f~l~~~~~~~~~~~~~-~~i~~~~~~~~~a~~~ 389 (437)
++..+.+-|.++.....++.+++|+.+. +.-+.+- .. +.|+.+|+..++...+..... .+++.+ +..-++..
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i-~~~~~~~~- 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISII-GPPFMPFW- 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHH-
Confidence 7778899999999999999999988887 5554443 33 448888877766543321111 122222 22222211
Q ss_pred HHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhh
Q 013741 390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIME 434 (437)
Q Consensus 390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~ 434 (437)
-++.++..+-+++ .|.+-.|.+ .|| .|=+ |++.++|++-+
T Consensus 317 -ll~wvi~nv~~~~-~P~el~p~f-yr~-gya~-P~~n~~~~~r~ 356 (382)
T PF12051_consen 317 -LLFWVILNVSSTF-YPLELSPGF-YRY-GYAM-PMHNIYEGLRV 356 (382)
T ss_pred -HHHHHHHhccccc-CChhhCccH-HHH-hhhh-hHHHHHHHHHH
Confidence 1222233344665 478888985 899 8888 99999999764
No 493
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.82 E-value=4.1 Score=38.75 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChh---hHhhhhHHHHHHHHHHHHHhhhhhhhH
Q 013741 222 SWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNP---AIYGRPKCVAFIYGFLICLSVGGLPSF 298 (437)
Q Consensus 222 ~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~---~i~~r~~~l~f~~~~~~~~~~~~~~~~ 298 (437)
++|+....+.+-.++.+.--+.-...-.+...+-+++.+.++-.+-++.+ +..-.--..+++..+..-.....-..+
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~ 82 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW 82 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555544332332233333444444555555544433222 211111123333333322111111222
Q ss_pred HHHHHHhhhccCCCCcchHHHHHHHHHHHhh--------HHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHH
Q 013741 299 IEEHKASYRERISCHYGEAVFVLSNFLSSFP--------FLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVE 370 (437)
Q Consensus 299 ~~er~v~~rE~~~g~Y~~~~y~la~~l~elP--------~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~ 370 (437)
--|+.|-.-|-+-.+-+|..|.....-.+.+ +.++..++|... |--+-.-.+....+.+.+.+.+....--
T Consensus 83 ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l-~~~~~~~l~~~~l~~~~l~la~~~~~~F 161 (268)
T COG4587 83 EFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALL-YGAILQFLSPWTLYLFVLALALLFLLRF 161 (268)
T ss_pred HHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 2356665555555566666666555555544 444434333221 2111122334444444443333322212
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 013741 371 TCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKF 413 (437)
Q Consensus 371 ~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~ 413 (437)
.+-..+++.+--..-|+.+....-.+..+.||.+.|..-.|++
T Consensus 162 ~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~~ 204 (268)
T COG4587 162 LIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPDW 204 (268)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChHH
Confidence 2223344443333446666777667777899999999999984
No 494
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=93.67 E-value=6.7 Score=37.38 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=45.9
Q ss_pred HHHHHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhc----ccc-cccChHHHHHHHHHHHHHHHHHHHHHH
Q 013741 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHY----MVQ-FHPGFSHYCHFCLSLFCCVSIVETCMM 374 (437)
Q Consensus 300 ~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~----m~g-l~~~~~~f~~f~l~~~~~~~~~~~~~~ 374 (437)
+++.--+|.-.+.-.++..+++||.++-+-+.++..++..++... ..+ -+-+...++...+.+++.......+..
T Consensus 71 E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l 150 (248)
T TIGR03733 71 EESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHL 150 (248)
T ss_pred HHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555566788999999998766666544432222221 111 122334454444445555555556777
Q ss_pred HHHHhccc
Q 013741 375 VVALLVPN 382 (437)
Q Consensus 375 ~i~~~~~~ 382 (437)
+++....+
T Consensus 151 ~ls~~~g~ 158 (248)
T TIGR03733 151 FVSFAFGM 158 (248)
T ss_pred HHHHHhCC
Confidence 77776664
No 495
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=0.2 Score=52.30 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHH---hCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741 34 GISSGEKKRLSISIEIL---TQP-----TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~---~~p-----~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd 103 (437)
.||-|||+-++++--|+ .+| +++++|.|.+.+|+.-....+..++..+.+++-||+-+|. ...+-+++|
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-tYF~rd~~~ 605 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-TYFYRDITL 605 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc-ceehHHHHh
Confidence 59999999988765543 355 4689999999999999999999999999999999999998 444444443
No 496
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.13 E-value=0.11 Score=51.97 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=47.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeCCeEEEeeC--hhHHHHHHHHcCC
Q 013741 56 LLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSNGETIYFGD--AKMAVKFFAEAGF 131 (437)
Q Consensus 56 l~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~-~fd~v~~L~~G~~v~~G~--~~~~~~~f~~~g~ 131 (437)
+++|||+.+||...+..+.+.|++.. ++.++|+++|+|.. +.. +-.|. +++.+.+ .+++.++.++.|.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~-ll~ti~SRc------~~~~~~~~~~~~~~~~L~~~~~ 186 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADK-VLPTIKSRC------RKMVLPAPSHEEALAYLRERGV 186 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHh-ChHHHHHHh------hhhcCCCCCHHHHHHHHHhcCC
Confidence 56789999999999999999999975 56889999999863 332 22222 2333333 3455667766543
No 497
>PRK04296 thymidine kinase; Provisional
Probab=92.84 E-value=0.28 Score=44.92 Aligned_cols=56 Identities=27% Similarity=0.249 Sum_probs=44.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC---------CchHHHhhcCeEEEEeC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ---------PSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq---------p~~~i~~~fd~v~~L~~ 110 (437)
.+++++++||- -=|| ..++.+.++.+++.|.+||++-+. ++..+..++|.|..|..
T Consensus 77 ~~~dvviIDEa-q~l~---~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 77 EKIDCVLIDEA-QFLD---KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred CCCCEEEEEcc-ccCC---HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 37899999999 1133 344677778778899999999999 77889999999998853
No 498
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.55 E-value=0.31 Score=43.48 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHHHHHHh--CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 41 KRLSISIEILT--QPTVLLLDEPTSG--LDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 41 kRv~ia~~l~~--~p~ll~lDEPtsg--LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
+-+..|.+.+. +.++++|||-..- ++-.....+.+.|++ +.++..+|+|.+.++.++.+++|-|--|..
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 34556666664 5699999998765 455667788888876 346789999999999999999999987754
No 499
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.14 E-value=0.11 Score=57.50 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=52.4
Q ss_pred cCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 013741 32 LRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL 105 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v 105 (437)
...||||||-.|++..-|+ ..+++++|||.-+.||-.-...|-++||.--....=||++.-+ -+|.-+|++
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKe---GMF~NANvL 1154 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKE---GMFNNANVL 1154 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchh---hccccchhh
Confidence 3579999999988765543 3557999999999999999999999999743344556666554 345555543
No 500
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=92.07 E-value=0.34 Score=48.83 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHH---------HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741 33 RGISSGEKKRLSISIEI---------LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l---------~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd 103 (437)
.-.|-||+|-+.++.-| ..++.||+|||-+|-||..-+..+++. .. ...++.|.+++.+ .+-+..+
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~--~~~Q~fvT~t~~~--~~~~~~~ 348 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE--LGVQVFVTTTDLE--DIDDNLD 348 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc--cCCeEEEEccCHH--Hhhhhhh
Confidence 34799999999887655 457899999999999999999999887 32 2345666666553 3443444
Q ss_pred ---eEEEEeCCeE
Q 013741 104 ---DLLLLSNGET 113 (437)
Q Consensus 104 ---~v~~L~~G~~ 113 (437)
++....+|++
T Consensus 349 ~~~~~f~V~~g~i 361 (363)
T COG1195 349 ENAQMFHVEDGKI 361 (363)
T ss_pred ccceEEEEeccee
Confidence 6666677765
Done!