Query 013741
Match_columns 437
No_of_seqs 297 out of 3161
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 1.4E-25 4.8E-30 216.7 15.5 117 2-124 116-233 (275)
2 3tui_C Methionine import ATP-b 99.9 3.5E-25 1.2E-29 220.9 15.1 116 2-123 136-252 (366)
3 2olj_A Amino acid ABC transpor 99.9 7.3E-25 2.5E-29 210.4 16.7 115 3-123 133-247 (263)
4 1b0u_A Histidine permease; ABC 99.9 6.7E-25 2.3E-29 210.7 15.9 115 3-123 126-241 (262)
5 1g6h_A High-affinity branched- 99.9 8.3E-25 2.8E-29 209.5 15.3 111 5-121 129-239 (257)
6 1vpl_A ABC transporter, ATP-bi 99.9 1.6E-24 5.3E-29 207.3 15.7 115 4-124 121-235 (256)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 2.8E-24 9.6E-29 214.1 16.6 117 2-124 111-228 (359)
8 3rlf_A Maltose/maltodextrin im 99.9 3.3E-24 1.1E-28 215.1 17.1 117 2-124 106-223 (381)
9 3tif_A Uncharacterized ABC tra 99.9 1.9E-24 6.5E-29 204.3 14.4 113 3-122 118-232 (235)
10 2pcj_A ABC transporter, lipopr 99.9 1.8E-24 6.2E-29 203.0 14.2 109 4-119 115-223 (224)
11 4g1u_C Hemin import ATP-bindin 99.9 1.9E-24 6.4E-29 208.0 14.5 113 5-123 117-236 (266)
12 2onk_A Molybdate/tungstate ABC 99.9 2E-24 6.8E-29 204.7 14.3 111 7-123 104-215 (240)
13 1z47_A CYSA, putative ABC-tran 99.9 5.6E-24 1.9E-28 212.0 16.9 116 2-123 118-234 (355)
14 1ji0_A ABC transporter; ATP bi 99.9 2.7E-24 9.2E-29 203.9 13.0 114 4-123 113-227 (240)
15 1oxx_K GLCV, glucose, ABC tran 99.9 6.5E-24 2.2E-28 211.9 16.1 116 2-123 113-229 (353)
16 1g29_1 MALK, maltose transport 99.9 1.1E-23 3.7E-28 211.6 17.0 116 2-123 112-228 (372)
17 2yz2_A Putative ABC transporte 99.9 4.1E-24 1.4E-28 205.7 13.4 114 5-124 112-227 (266)
18 2it1_A 362AA long hypothetical 99.9 7.2E-24 2.5E-28 211.9 15.6 116 2-123 106-222 (362)
19 2nq2_C Hypothetical ABC transp 99.9 7.8E-24 2.7E-28 202.2 15.2 111 5-122 104-215 (253)
20 2ihy_A ABC transporter, ATP-bi 99.9 3.9E-24 1.3E-28 207.1 12.9 112 5-122 137-250 (279)
21 2yyz_A Sugar ABC transporter, 99.9 7.3E-24 2.5E-28 211.6 15.2 115 4-124 108-223 (359)
22 2zu0_C Probable ATP-dependent 99.9 1.1E-23 3.9E-28 202.7 15.7 122 4-131 137-260 (267)
23 1v43_A Sugar-binding transport 99.9 1.1E-23 3.8E-28 211.2 15.8 116 2-123 114-230 (372)
24 2d2e_A SUFC protein; ABC-ATPas 99.9 8.7E-24 3E-28 201.6 13.9 111 5-121 117-230 (250)
25 2qi9_C Vitamin B12 import ATP- 99.9 2.3E-23 7.8E-28 198.5 14.2 110 7-122 104-220 (249)
26 3d31_A Sulfate/molybdate ABC t 99.9 3.9E-23 1.3E-27 205.6 14.4 110 8-123 106-216 (348)
27 2ff7_A Alpha-hemolysin translo 99.9 1.7E-22 5.7E-27 192.4 13.8 113 8-123 113-231 (247)
28 2pjz_A Hypothetical protein ST 99.9 2E-22 6.9E-27 193.4 13.0 108 7-123 105-214 (263)
29 2ixe_A Antigen peptide transpo 99.9 2.3E-22 7.9E-27 193.9 12.7 109 9-124 134-245 (271)
30 1mv5_A LMRA, multidrug resista 99.9 1.7E-22 5.9E-27 191.8 11.3 113 8-123 107-225 (243)
31 3nh6_A ATP-binding cassette SU 99.9 7.8E-22 2.7E-26 193.0 15.4 113 8-124 158-277 (306)
32 2ghi_A Transport protein; mult 99.9 1.2E-21 4E-26 187.9 15.0 112 8-123 123-241 (260)
33 3gd7_A Fusion complex of cysti 99.8 1.4E-21 4.8E-26 197.1 10.1 115 7-124 122-242 (390)
34 2yl4_A ATP-binding cassette SU 99.8 9.6E-21 3.3E-25 202.0 14.4 113 7-123 450-569 (595)
35 3b60_A Lipid A export ATP-bind 99.8 1.2E-20 4.2E-25 200.6 15.1 114 7-124 447-567 (582)
36 2cbz_A Multidrug resistance-as 99.8 9.2E-21 3.1E-25 179.2 12.5 91 30-123 123-216 (237)
37 2pze_A Cystic fibrosis transme 99.8 7E-21 2.4E-25 179.1 11.5 110 10-123 100-217 (229)
38 3b5x_A Lipid A export ATP-bind 99.8 1.1E-20 3.7E-25 201.1 14.1 113 7-123 447-566 (582)
39 3qf4_A ABC transporter, ATP-bi 99.8 3.6E-20 1.2E-24 197.1 15.6 113 8-124 447-566 (587)
40 4a82_A Cystic fibrosis transme 99.8 5E-20 1.7E-24 195.8 15.2 113 8-124 445-564 (578)
41 3j16_B RLI1P; ribosome recycli 99.8 2.3E-20 8E-25 198.3 12.0 111 8-124 446-559 (608)
42 1sgw_A Putative ABC transporte 99.8 5.2E-21 1.8E-25 178.0 5.7 96 7-109 112-207 (214)
43 3qf4_B Uncharacterized ABC tra 99.8 4.2E-20 1.4E-24 197.0 12.0 112 9-124 460-578 (598)
44 2bbs_A Cystic fibrosis transme 99.8 6.4E-20 2.2E-24 178.3 11.8 110 10-123 129-246 (290)
45 3bk7_A ABC transporter ATP-bin 99.8 9.7E-20 3.3E-24 193.8 13.6 111 8-124 450-563 (607)
46 1yqt_A RNAse L inhibitor; ATP- 99.8 7E-20 2.4E-24 192.7 12.3 111 8-124 380-493 (538)
47 3ux8_A Excinuclease ABC, A sub 99.8 2.6E-19 9E-24 193.4 15.2 109 8-123 521-639 (670)
48 3ozx_A RNAse L inhibitor; ATP 99.8 2.6E-19 8.8E-24 188.1 12.9 109 8-122 364-475 (538)
49 3ux8_A Excinuclease ABC, A sub 99.8 2.9E-19 9.9E-24 193.1 13.6 104 13-123 185-297 (670)
50 3bk7_A ABC transporter ATP-bin 99.8 2.7E-19 9.1E-24 190.4 11.7 99 8-112 207-305 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 2.2E-19 7.5E-24 188.9 10.7 99 8-112 137-235 (538)
52 3j16_B RLI1P; ribosome recycli 99.8 4E-19 1.4E-23 188.9 12.1 103 8-116 200-302 (608)
53 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 8.4E-19 2.9E-23 153.7 11.9 82 29-112 52-141 (148)
54 2iw3_A Elongation factor 3A; a 99.8 1.4E-18 4.9E-23 191.6 15.2 109 7-124 525-635 (986)
55 3ozx_A RNAse L inhibitor; ATP 99.8 3.2E-19 1.1E-23 187.4 8.9 101 8-115 117-217 (538)
56 3pih_A Uvrabc system protein A 99.8 1.8E-18 6.3E-23 190.4 15.2 110 8-123 783-901 (916)
57 4f4c_A Multidrug resistance pr 99.8 9.1E-19 3.1E-23 201.5 11.9 114 7-124 1184-1304(1321)
58 2vf7_A UVRA2, excinuclease ABC 99.8 2.6E-18 9E-23 187.7 13.6 110 7-123 707-826 (842)
59 2r6f_A Excinuclease ABC subuni 99.8 4.7E-18 1.6E-22 186.3 14.8 109 8-123 823-941 (972)
60 3pih_A Uvrabc system protein A 99.7 4.8E-18 1.6E-22 187.1 14.2 108 9-123 443-559 (916)
61 2ygr_A Uvrabc system protein A 99.7 8.1E-18 2.8E-22 185.0 15.4 110 8-124 841-960 (993)
62 4f4c_A Multidrug resistance pr 99.7 3.3E-18 1.1E-22 196.8 12.7 114 7-124 521-641 (1321)
63 2r6f_A Excinuclease ABC subuni 99.7 5.1E-18 1.7E-22 186.0 13.3 110 5-122 480-598 (972)
64 2ygr_A Uvrabc system protein A 99.7 8.4E-18 2.9E-22 184.9 14.5 113 4-124 496-617 (993)
65 3g5u_A MCG1178, multidrug resi 99.7 8.8E-18 3E-22 192.9 15.2 100 21-124 1159-1258(1284)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 4.4E-18 1.5E-22 170.8 9.6 84 30-115 275-364 (365)
67 3g5u_A MCG1178, multidrug resi 99.7 9.7E-18 3.3E-22 192.5 13.2 100 21-124 514-613 (1284)
68 2vf7_A UVRA2, excinuclease ABC 99.7 1.6E-17 5.6E-22 181.5 13.5 110 5-122 355-473 (842)
69 2iw3_A Elongation factor 3A; a 99.7 9.4E-18 3.2E-22 185.1 8.4 103 7-118 877-981 (986)
70 4aby_A DNA repair protein RECN 99.7 2E-16 6.8E-21 161.0 13.4 80 35-117 296-381 (415)
71 3kta_B Chromosome segregation 99.6 2.5E-14 8.6E-19 128.4 13.0 90 32-124 62-158 (173)
72 3qkt_A DNA double-strand break 99.6 8.3E-15 2.9E-19 145.5 10.1 77 31-109 245-327 (339)
73 4ad8_A DNA repair protein RECN 99.6 6.3E-15 2.2E-19 154.5 9.6 77 32-111 394-473 (517)
74 2o5v_A DNA replication and rep 99.5 4.1E-15 1.4E-19 148.5 7.5 87 28-122 258-354 (359)
75 1e69_A Chromosome segregation 99.5 1.7E-14 5.7E-19 142.3 11.1 88 31-121 216-310 (322)
76 3auy_A DNA double-strand break 99.5 1.5E-13 5.2E-18 138.0 11.9 100 7-109 242-359 (371)
77 2npi_A Protein CLP1; CLP1-PCF1 99.5 2.7E-15 9.4E-20 154.5 -2.3 102 9-122 217-336 (460)
78 1ye8_A Protein THEP1, hypothet 99.4 3.2E-13 1.1E-17 121.8 7.6 78 31-115 73-159 (178)
79 4gp7_A Metallophosphoesterase; 99.3 2.4E-13 8.4E-18 121.5 3.3 62 34-95 83-160 (171)
80 1w1w_A Structural maintenance 99.3 2.1E-12 7.1E-17 132.2 10.4 75 33-109 332-410 (430)
81 3b85_A Phosphate starvation-in 99.2 1.3E-12 4.4E-17 120.8 -2.4 52 38-95 108-159 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.1 2.7E-11 9.2E-16 127.1 5.7 81 31-112 350-444 (525)
83 1tq4_A IIGP1, interferon-induc 99.0 3.1E-11 1.1E-15 122.4 -1.7 97 8-111 135-254 (413)
84 1cr0_A DNA primase/helicase; R 98.9 1.6E-09 5.6E-14 104.8 9.3 80 33-113 128-237 (296)
85 3thx_A DNA mismatch repair pro 98.9 8.5E-10 2.9E-14 122.1 7.5 90 31-122 718-811 (934)
86 2pt7_A CAG-ALFA; ATPase, prote 98.7 2.6E-09 8.8E-14 105.5 1.2 68 37-113 225-292 (330)
87 2w0m_A SSO2452; RECA, SSPF, un 98.6 5.7E-08 1.9E-12 89.5 8.3 78 34-111 103-192 (235)
88 2v9p_A Replication protein E1; 98.6 3.6E-10 1.2E-14 110.1 -7.3 72 33-128 199-270 (305)
89 2o8b_B DNA mismatch repair pro 98.6 4.9E-08 1.7E-12 109.3 8.4 84 34-120 851-938 (1022)
90 1znw_A Guanylate kinase, GMP k 98.6 3.1E-10 1.1E-14 104.2 -7.8 89 4-109 103-202 (207)
91 3thx_B DNA mismatch repair pro 98.6 3.4E-08 1.2E-12 109.1 6.5 81 32-115 733-816 (918)
92 1nlf_A Regulatory protein REPA 98.6 8.4E-08 2.9E-12 92.0 7.5 78 10-95 99-182 (279)
93 2ehv_A Hypothetical protein PH 98.5 1.1E-07 3.7E-12 88.9 5.4 72 37-109 120-206 (251)
94 2cvh_A DNA repair and recombin 98.3 1.1E-06 3.7E-11 80.3 8.4 78 34-111 84-185 (220)
95 1tf7_A KAIC; homohexamer, hexa 98.3 1.3E-07 4.5E-12 99.0 2.0 72 41-112 126-211 (525)
96 3b9q_A Chloroplast SRP recepto 98.3 1.8E-07 6.2E-12 91.0 2.1 71 33-113 203-284 (302)
97 4a74_A DNA repair and recombin 98.2 1E-06 3.5E-11 81.0 5.6 103 8-112 74-201 (231)
98 3sop_A Neuronal-specific septi 98.2 1.4E-07 4.8E-12 90.3 -0.9 54 33-94 97-150 (270)
99 1wb9_A DNA mismatch repair pro 98.2 1E-06 3.4E-11 96.4 4.7 82 34-118 669-752 (800)
100 1pzn_A RAD51, DNA repair and r 98.1 1.3E-06 4.5E-11 86.7 4.7 108 8-118 180-309 (349)
101 1ewq_A DNA mismatch repair pro 98.1 1.6E-06 5.3E-11 94.4 5.6 66 32-102 633-704 (765)
102 2obl_A ESCN; ATPase, hydrolase 98.1 1.1E-07 3.9E-12 94.2 -3.6 78 32-122 169-253 (347)
103 2og2_A Putative signal recogni 98.1 1.9E-06 6.6E-11 85.6 4.9 71 33-113 260-341 (359)
104 2dpy_A FLII, flagellum-specifi 98.0 2.7E-07 9.2E-12 94.4 -2.9 78 32-122 256-342 (438)
105 2eyu_A Twitching motility prot 98.0 3.5E-06 1.2E-10 80.2 4.6 61 41-110 87-147 (261)
106 1pui_A ENGB, probable GTP-bind 97.9 8.5E-06 2.9E-10 73.7 5.6 74 9-86 128-202 (210)
107 3aez_A Pantothenate kinase; tr 97.9 2.6E-07 8.9E-12 90.3 -5.6 55 7-67 155-209 (312)
108 1z6g_A Guanylate kinase; struc 97.9 6.4E-08 2.2E-12 89.6 -9.6 50 33-82 121-175 (218)
109 3ec2_A DNA replication protein 97.8 2.7E-05 9.1E-10 69.1 6.2 51 47-97 95-146 (180)
110 2i3b_A HCR-ntpase, human cance 97.8 9E-07 3.1E-11 80.1 -3.9 79 32-117 81-169 (189)
111 3asz_A Uridine kinase; cytidin 97.8 6.1E-08 2.1E-12 88.6 -11.9 83 8-95 68-162 (211)
112 3jvv_A Twitching mobility prot 97.7 1E-05 3.6E-10 80.3 2.9 59 44-111 188-246 (356)
113 1n0w_A DNA repair protein RAD5 97.5 0.00024 8.1E-09 65.6 7.7 79 34-112 98-210 (243)
114 2qnr_A Septin-2, protein NEDD5 97.4 7.5E-06 2.5E-10 79.5 -3.5 57 31-95 110-168 (301)
115 2kjq_A DNAA-related protein; s 97.3 0.00012 4.1E-09 63.3 3.3 50 48-98 79-129 (149)
116 2bdt_A BH3686; alpha-beta prot 97.3 1.4E-06 4.7E-11 78.2 -9.5 80 36-122 96-182 (189)
117 2jeo_A Uridine-cytidine kinase 97.2 2.8E-05 9.7E-10 72.8 -1.6 75 32-126 114-189 (245)
118 3lda_A DNA repair protein RAD5 97.1 0.0011 3.9E-08 66.6 8.3 73 40-112 259-364 (400)
119 2r6a_A DNAB helicase, replicat 97.1 0.0024 8.1E-08 65.3 10.7 79 33-113 294-401 (454)
120 1sxj_E Activator 1 40 kDa subu 96.9 0.00083 2.9E-08 65.7 6.0 46 49-96 131-176 (354)
121 2ewv_A Twitching motility prot 96.5 0.0012 4.1E-08 65.8 3.1 59 42-109 199-257 (372)
122 1lw7_A Transcriptional regulat 96.4 0.00029 1E-08 69.9 -1.8 74 34-109 258-342 (365)
123 3szr_A Interferon-induced GTP- 96.4 0.0014 4.8E-08 69.6 3.2 75 50-124 144-237 (608)
124 2dr3_A UPF0273 protein PH0284; 96.3 0.012 3.9E-07 54.0 8.5 60 51-110 127-196 (247)
125 2qag_C Septin-7; cell cycle, c 96.2 0.00063 2.1E-08 68.9 -0.4 54 35-93 119-176 (418)
126 1rj9_A FTSY, signal recognitio 96.0 0.002 7E-08 62.3 1.9 56 35-95 203-259 (304)
127 2zr9_A Protein RECA, recombina 96.0 0.021 7E-07 56.3 9.1 78 41-118 126-237 (349)
128 1odf_A YGR205W, hypothetical 3 95.8 0.0005 1.7E-08 66.2 -3.3 37 31-69 131-169 (290)
129 2f1r_A Molybdopterin-guanine d 95.8 0.00038 1.3E-08 61.7 -3.9 69 9-84 84-163 (171)
130 1nij_A Hypothetical protein YJ 95.8 0.00089 3E-08 65.2 -1.6 57 34-103 141-197 (318)
131 2bbw_A Adenylate kinase 4, AK4 95.8 0.0002 6.8E-09 66.8 -6.1 46 32-84 150-200 (246)
132 1udx_A The GTP-binding protein 95.7 0.0026 8.7E-08 64.3 1.2 70 31-105 249-319 (416)
133 2ce7_A Cell division protein F 95.2 0.028 9.5E-07 57.7 7.0 59 37-95 93-165 (476)
134 2xau_A PRE-mRNA-splicing facto 95.2 0.0095 3.2E-07 64.9 3.5 80 32-112 188-270 (773)
135 2ius_A DNA translocase FTSK; n 94.9 0.0026 9.1E-08 65.8 -1.8 88 5-96 242-344 (512)
136 4a1f_A DNAB helicase, replicat 94.4 0.063 2.2E-06 52.5 6.7 77 1-90 84-162 (338)
137 1s96_A Guanylate kinase, GMP k 93.6 0.1 3.6E-06 47.6 6.3 63 46-127 101-163 (219)
138 3bh0_A DNAB-like replicative h 93.5 0.31 1E-05 46.9 9.7 75 35-109 134-264 (315)
139 1ni3_A YCHF GTPase, YCHF GTP-b 93.3 0.0003 1E-08 70.6 -12.4 67 52-121 139-210 (392)
140 2z4s_A Chromosomal replication 92.9 0.019 6.5E-07 58.3 0.1 69 52-120 194-264 (440)
141 1zp6_A Hypothetical protein AT 92.4 0.015 5.3E-07 51.1 -1.3 53 32-92 107-159 (191)
142 3euj_A Chromosome partition pr 92.3 0.17 5.8E-06 51.8 6.2 71 32-109 377-464 (483)
143 1g5t_A COB(I)alamin adenosyltr 91.5 0.15 5.1E-06 45.8 4.2 72 40-112 106-181 (196)
144 1vma_A Cell division protein F 91.5 0.2 6.9E-06 48.2 5.4 60 10-82 151-213 (306)
145 1ls1_A Signal recognition part 91.5 0.37 1.3E-05 46.0 7.2 46 36-81 164-210 (295)
146 2px0_A Flagellar biosynthesis 90.9 0.13 4.5E-06 49.2 3.4 70 44-116 174-247 (296)
147 2gza_A Type IV secretion syste 90.6 0.072 2.5E-06 52.5 1.3 68 36-112 236-303 (361)
148 1lw7_A Transcriptional regulat 90.2 0.2 6.7E-06 49.3 4.1 29 34-62 296-329 (365)
149 2e87_A Hypothetical protein PH 88.3 0.53 1.8E-05 46.0 5.6 60 33-94 230-292 (357)
150 3b9p_A CG5977-PA, isoform A; A 87.3 1.4 4.7E-05 41.3 7.7 73 36-108 97-186 (297)
151 2b8t_A Thymidine kinase; deoxy 85.3 1.7 5.8E-05 39.6 6.8 53 52-109 89-150 (223)
152 1lvg_A Guanylate kinase, GMP k 84.9 0.016 5.5E-07 51.9 -6.9 54 48-110 120-173 (198)
153 1oix_A RAS-related protein RAB 84.0 0.33 1.1E-05 42.5 1.4 38 40-79 151-188 (191)
154 2q6t_A DNAB replication FORK h 80.7 7.4 0.00025 38.9 10.2 60 51-110 309-397 (444)
155 2rcn_A Probable GTPase ENGC; Y 79.9 0.36 1.2E-05 47.5 0.0 42 2-49 287-328 (358)
156 2eyu_A Twitching motility prot 78.6 0.0021 7.3E-08 60.7 -15.9 69 22-93 161-239 (261)
157 2qag_B Septin-6, protein NEDD5 76.8 2.4 8.3E-05 42.5 5.0 57 33-92 160-217 (427)
158 2w58_A DNAI, primosome compone 75.9 1.9 6.3E-05 37.8 3.5 54 48-101 111-166 (202)
159 1fnn_A CDC6P, cell division co 75.5 4.3 0.00015 39.1 6.4 44 51-95 124-170 (389)
160 3c8u_A Fructokinase; YP_612366 75.3 0.031 1.1E-06 50.3 -8.6 73 33-126 110-183 (208)
161 2z43_A DNA repair and recombin 74.2 3.7 0.00013 39.3 5.5 53 41-93 189-257 (324)
162 1l8q_A Chromosomal replication 73.5 2.3 8E-05 40.4 3.8 47 50-96 96-143 (324)
163 2qtf_A Protein HFLX, GTP-bindi 72.7 2.1 7.2E-05 42.0 3.3 71 7-82 278-353 (364)
164 1u94_A RECA protein, recombina 72.6 15 0.00052 35.6 9.5 76 42-117 129-238 (356)
165 2orv_A Thymidine kinase; TP4A 72.0 6.2 0.00021 36.1 6.1 55 49-109 87-150 (234)
166 2r8r_A Sensor protein; KDPD, P 71.4 4.1 0.00014 37.2 4.7 48 45-92 77-125 (228)
167 3bgw_A DNAB-like replicative h 70.9 15 0.00051 36.8 9.3 59 52-110 308-394 (444)
168 1in4_A RUVB, holliday junction 70.7 0.29 9.9E-06 47.4 -3.5 35 32-82 160-194 (334)
169 1xx6_A Thymidine kinase; NESG, 68.0 9 0.00031 33.7 6.2 53 52-109 81-142 (191)
170 2f9l_A RAB11B, member RAS onco 67.7 3.4 0.00012 35.9 3.3 38 42-81 129-166 (199)
171 1v5w_A DMC1, meiotic recombina 67.6 6.6 0.00023 37.9 5.6 53 41-93 204-273 (343)
172 2j9r_A Thymidine kinase; TK1, 67.2 5.2 0.00018 36.1 4.4 53 52-109 101-162 (214)
173 3k1j_A LON protease, ATP-depen 67.0 1.4 4.7E-05 46.3 0.6 46 33-79 182-227 (604)
174 2qm8_A GTPase/ATPase; G protei 65.7 2.4 8.3E-05 41.0 2.0 46 33-82 209-260 (337)
175 2ewv_A Twitching motility prot 64.6 0.011 3.9E-07 58.6 -15.2 60 35-96 284-353 (372)
176 3hr8_A Protein RECA; alpha and 63.9 42 0.0014 32.5 10.6 77 41-117 126-236 (356)
177 2qgz_A Helicase loader, putati 62.9 5.5 0.00019 37.9 3.9 54 49-102 211-266 (308)
178 2oap_1 GSPE-2, type II secreti 59.0 0.014 4.7E-07 60.5 -16.3 57 33-102 399-457 (511)
179 3d8b_A Fidgetin-like protein 1 58.7 22 0.00076 34.2 7.6 53 42-94 166-231 (357)
180 1b9m_A Protein (mode); DNA-bin 56.5 6.9 0.00024 35.9 3.3 47 2-54 47-93 (265)
181 4ag6_A VIRB4 ATPase, type IV s 53.5 16 0.00055 35.6 5.6 45 52-96 262-309 (392)
182 3e70_C DPA, signal recognition 53.3 1.2 4E-05 43.2 -2.7 44 44-94 235-279 (328)
183 3llm_A ATP-dependent RNA helic 52.3 18 0.00062 32.3 5.4 67 36-104 162-229 (235)
184 2qby_A CDC6 homolog 1, cell di 51.6 2.8 9.5E-05 40.3 -0.3 44 52-95 128-174 (386)
185 3cf0_A Transitional endoplasmi 51.5 16 0.00054 34.3 5.0 51 45-95 101-165 (301)
186 3bos_A Putative DNA replicatio 48.8 12 0.00041 32.9 3.5 45 51-95 103-149 (242)
187 1njg_A DNA polymerase III subu 46.5 12 0.00042 32.6 3.2 42 52-95 126-167 (250)
188 1m3s_A Hypothetical protein YC 46.5 30 0.001 29.6 5.6 42 71-112 93-134 (186)
189 4dgh_A Sulfate permease family 46.2 42 0.0014 26.9 6.2 51 50-102 46-97 (130)
190 2orw_A Thymidine kinase; TMTK, 46.0 14 0.00047 32.1 3.4 53 52-109 76-137 (184)
191 3h4m_A Proteasome-activating n 45.9 20 0.00068 32.8 4.7 51 44-94 102-166 (285)
192 1tk9_A Phosphoheptose isomeras 45.7 28 0.00096 29.7 5.4 42 71-112 124-165 (188)
193 2x8a_A Nuclear valosin-contain 44.1 0.44 1.5E-05 44.9 -7.3 30 32-63 135-164 (274)
194 1jjv_A Dephospho-COA kinase; P 43.8 3 0.0001 36.6 -1.4 70 36-109 61-131 (206)
195 2xhz_A KDSD, YRBH, arabinose 5 43.3 31 0.001 29.3 5.2 41 71-111 110-150 (183)
196 3sho_A Transcriptional regulat 43.0 32 0.0011 29.3 5.3 42 71-112 101-142 (187)
197 2i1q_A DNA repair and recombin 43.0 23 0.00078 33.4 4.7 68 42-110 191-290 (322)
198 2kln_A Probable sulphate-trans 42.9 8.1 0.00028 31.3 1.3 75 52-128 47-123 (130)
199 1q57_A DNA primase/helicase; d 42.7 96 0.0033 31.1 9.6 68 43-110 343-441 (503)
200 2xbl_A Phosphoheptose isomeras 41.8 34 0.0012 29.4 5.3 41 71-111 130-170 (198)
201 2qz4_A Paraplegin; AAA+, SPG7, 40.4 55 0.0019 29.1 6.7 51 45-95 91-156 (262)
202 1p9r_A General secretion pathw 40.0 0.94 3.2E-05 45.5 -6.0 36 13-57 279-314 (418)
203 3fxa_A SIS domain protein; str 39.9 27 0.00094 30.3 4.4 42 71-112 106-147 (201)
204 1vim_A Hypothetical protein AF 39.8 40 0.0014 29.4 5.5 61 52-112 73-144 (200)
205 3ny7_A YCHM protein, sulfate t 38.0 19 0.00064 28.7 2.7 51 51-104 44-95 (118)
206 3szr_A Interferon-induced GTP- 37.9 15 0.0005 38.5 2.6 60 32-92 162-223 (608)
207 4dgf_A Sulfate transporter sul 37.8 54 0.0019 26.4 5.7 43 51-93 50-93 (135)
208 1x92_A APC5045, phosphoheptose 37.7 52 0.0018 28.3 5.9 42 71-112 127-171 (199)
209 2nly_A BH1492 protein, diverge 36.6 2.2E+02 0.0075 25.9 10.0 105 1-119 80-193 (245)
210 1xwi_A SKD1 protein; VPS4B, AA 36.3 1.2E+02 0.0042 28.3 8.7 62 45-106 98-174 (322)
211 2qp9_X Vacuolar protein sortin 36.0 1.1E+02 0.0037 29.2 8.4 63 45-107 136-213 (355)
212 1xp8_A RECA protein, recombina 35.6 1.2E+02 0.0041 29.3 8.6 72 41-113 139-245 (366)
213 3etn_A Putative phosphosugar i 35.1 56 0.0019 28.9 5.8 43 70-112 119-163 (220)
214 3fj1_A Putative phosphosugar i 34.6 52 0.0018 31.5 5.7 43 70-112 104-146 (344)
215 3llo_A Prestin; STAS domain, c 34.3 79 0.0027 25.6 6.2 72 52-125 63-137 (143)
216 3hu3_A Transitional endoplasmi 34.0 34 0.0012 34.6 4.5 51 45-95 290-351 (489)
217 3jte_A Response regulator rece 33.4 1.1E+02 0.0037 23.9 6.9 40 51-93 48-87 (143)
218 1tue_A Replication protein E1; 33.3 45 0.0016 29.8 4.7 55 51-109 102-175 (212)
219 3eua_A Putative fructose-amino 32.8 56 0.0019 31.0 5.6 43 70-112 87-129 (329)
220 1srr_A SPO0F, sporulation resp 32.2 1.5E+02 0.005 22.3 7.3 38 51-92 46-83 (124)
221 2i2w_A Phosphoheptose isomeras 32.1 41 0.0014 29.5 4.3 41 71-111 145-185 (212)
222 3oiz_A Antisigma-factor antago 31.9 51 0.0017 25.2 4.3 53 50-104 41-94 (99)
223 3k7i_B IHH, HHG-2, indian hedg 31.8 20 0.00067 31.2 1.9 34 50-83 69-102 (187)
224 3co5_A Putative two-component 31.3 75 0.0026 25.7 5.5 43 51-94 74-116 (143)
225 2yva_A DNAA initiator-associat 30.7 73 0.0025 27.2 5.6 41 71-111 123-166 (196)
226 3cmw_A Protein RECA, recombina 30.3 2E+02 0.0067 34.0 10.4 72 42-113 798-903 (1706)
227 2qv5_A AGR_C_5032P, uncharacte 30.1 2.2E+02 0.0076 26.1 9.0 61 1-66 107-167 (261)
228 1sbo_A Putative anti-sigma fac 29.9 1.6E+02 0.0055 21.9 7.1 51 50-102 40-92 (110)
229 2rdm_A Response regulator rece 29.7 1.2E+02 0.0043 23.0 6.5 40 52-94 50-90 (132)
230 3trj_A Phosphoheptose isomeras 28.6 63 0.0021 28.2 4.8 42 70-111 127-171 (201)
231 1ega_A Protein (GTP-binding pr 27.6 35 0.0012 32.0 3.1 64 35-106 101-170 (301)
232 3fkj_A Putative phosphosugar i 27.3 73 0.0025 30.5 5.4 42 70-111 102-143 (347)
233 1tmy_A CHEY protein, TMY; chem 27.0 1.6E+02 0.0055 21.9 6.6 40 51-93 46-85 (120)
234 1lv7_A FTSH; alpha/beta domain 26.9 1.1E+02 0.0036 27.3 6.3 46 50-95 102-161 (257)
235 3hba_A Putative phosphosugar i 26.7 62 0.0021 30.9 4.7 43 70-112 103-145 (334)
236 1jeo_A MJ1247, hypothetical pr 26.2 62 0.0021 27.2 4.3 39 71-110 96-134 (180)
237 1dbw_A Transcriptional regulat 26.1 1E+02 0.0036 23.4 5.4 40 51-93 46-85 (126)
238 4fcw_A Chaperone protein CLPB; 25.6 59 0.002 29.9 4.3 56 45-101 111-177 (311)
239 2ka5_A Putative anti-sigma fac 25.5 1.7E+02 0.0058 23.0 6.6 50 51-102 50-100 (125)
240 2chg_A Replication factor C sm 25.0 71 0.0024 27.0 4.5 43 51-95 101-143 (226)
241 3a10_A Response regulator; pho 24.7 1.8E+02 0.006 21.5 6.4 39 51-92 44-82 (116)
242 1jcn_A Inosine monophosphate d 24.6 0.98 3.4E-05 46.5 -9.1 74 47-127 28-105 (514)
243 4b4t_J 26S protease regulatory 24.5 2E+02 0.0067 28.3 8.0 53 43-95 232-298 (405)
244 3f6c_A Positive transcription 24.5 1.5E+02 0.005 22.7 6.0 26 51-79 45-70 (134)
245 3t34_A Dynamin-related protein 24.2 47 0.0016 31.8 3.4 57 35-92 155-212 (360)
246 3cz5_A Two-component response 24.2 2.1E+02 0.0071 22.5 7.1 40 51-93 50-89 (153)
247 2poc_A D-fructose-6- PH, isome 24.2 1E+02 0.0034 29.7 5.8 43 70-112 110-152 (367)
248 1sxj_D Activator 1 41 kDa subu 24.0 42 0.0014 31.5 2.9 43 52-96 133-175 (353)
249 3hzh_A Chemotaxis response reg 24.0 1.9E+02 0.0065 23.0 6.9 75 5-93 47-121 (157)
250 3tbf_A Glucosamine--fructose-6 23.7 82 0.0028 30.5 5.0 43 70-112 114-157 (372)
251 3eul_A Possible nitrate/nitrit 23.2 1.9E+02 0.0066 22.7 6.7 26 51-79 60-85 (152)
252 3rhz_A GTF3, nucleotide sugar 23.2 2.1E+02 0.0072 27.1 7.8 109 7-132 31-154 (339)
253 3n1g_B Desert hedgehog protein 23.0 35 0.0012 29.5 1.9 31 52-82 63-93 (170)
254 4b4t_L 26S protease subunit RP 22.9 2E+02 0.0067 28.6 7.7 73 42-120 264-353 (437)
255 3g68_A Putative phosphosugar i 22.9 60 0.002 31.2 3.8 43 70-112 95-137 (352)
256 2zj3_A Glucosamine--fructose-6 22.8 1.1E+02 0.0037 29.6 5.7 43 70-112 120-162 (375)
257 1k68_A Phytochrome response re 22.7 1.9E+02 0.0065 22.0 6.4 40 51-93 54-95 (140)
258 3b2n_A Uncharacterized protein 22.6 2E+02 0.0067 22.0 6.5 39 51-93 48-86 (133)
259 3lua_A Response regulator rece 22.6 1.6E+02 0.0056 22.7 6.0 41 51-93 49-91 (140)
260 3ilh_A Two component response 21.8 1.4E+02 0.0048 23.1 5.4 27 51-80 59-85 (146)
261 1nri_A Hypothetical protein HI 21.8 1E+02 0.0035 28.8 5.2 42 71-112 154-195 (306)
262 4dad_A Putative pilus assembly 21.8 1.9E+02 0.0063 22.5 6.2 40 51-93 66-105 (146)
263 1dz3_A Stage 0 sporulation pro 21.8 2.4E+02 0.0081 21.3 6.8 40 51-93 47-87 (130)
264 2qxy_A Response regulator; reg 21.7 1.4E+02 0.0048 23.1 5.4 37 51-92 47-83 (142)
265 3zxn_A RSBS, anti-sigma-factor 21.4 1.5E+02 0.0051 23.5 5.5 73 52-127 42-115 (123)
266 2rjn_A Response regulator rece 21.4 1.4E+02 0.0049 23.6 5.5 39 51-93 50-88 (154)
267 3eod_A Protein HNR; response r 21.2 94 0.0032 23.8 4.2 72 5-93 18-89 (130)
268 2jk1_A HUPR, hydrogenase trans 21.2 2E+02 0.0067 22.2 6.2 40 51-93 43-82 (139)
269 3eie_A Vacuolar protein sortin 21.2 2.3E+02 0.0078 26.2 7.6 62 45-106 103-179 (322)
270 3knz_A Putative sugar binding 20.9 69 0.0024 31.0 3.8 43 70-112 110-152 (366)
271 4e7p_A Response regulator; DNA 20.8 1.4E+02 0.0047 23.6 5.2 39 51-93 65-103 (150)
272 2zts_A Putative uncharacterize 20.7 63 0.0022 28.3 3.3 60 50-109 133-206 (251)
273 3vfd_A Spastin; ATPase, microt 20.4 2.1E+02 0.0072 27.4 7.3 17 45-61 200-216 (389)
274 3kl4_A SRP54, signal recogniti 20.4 83 0.0029 31.3 4.4 49 45-93 172-223 (433)
275 2pl1_A Transcriptional regulat 20.3 2.6E+02 0.009 20.5 6.7 26 51-79 43-68 (121)
276 1mvo_A PHOP response regulator 20.3 2.4E+02 0.0081 21.4 6.5 39 51-92 46-84 (136)
277 2qvg_A Two component response 20.1 1.8E+02 0.0062 22.4 5.8 40 51-93 58-98 (143)
278 2dy1_A Elongation factor G; tr 20.1 1.4E+02 0.0047 31.4 6.2 43 48-95 95-137 (665)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=1.4e-25 Score=216.69 Aligned_cols=117 Identities=26% Similarity=0.443 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||.+.++..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 355667899999999999988877664 699999999999999999999999999999999999999999999998
Q ss_pred -hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 -LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 -~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
++|.|||+++|++. .+.+++|++++|++|++++.|+++++.+
T Consensus 191 ~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 191 KELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred hhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 56999999999985 5788999999999999999999988643
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=3.5e-25 Score=220.87 Aligned_cols=116 Identities=28% Similarity=0.371 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||.+.++... ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus 136 ~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 136 PKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 45667789999999999998777655 5699999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|||+++|++ ..+.++|||+++|++|+++..|+++++.
T Consensus 211 ~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 211 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7 599999999996 4788999999999999999999998764
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=7.3e-25 Score=210.40 Aligned_cols=115 Identities=26% Similarity=0.360 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+++.+++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 133 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 207 (263)
T 2olj_A 133 REKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207 (263)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 34556789999999999988776654 6999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus 208 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 208 EGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 8999999999964 678899999999999999999998764
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=6.7e-25 Score=210.73 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++.+++++++++.+||.+. ++..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 126 ~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 126 KHDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 34556789999999999987 776654 699999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++|.|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 201 ~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 201 EEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 88999999999964 678899999999999999999998764
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=8.3e-25 Score=209.54 Aligned_cols=111 Identities=21% Similarity=0.327 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 129 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 455789999999999988877664 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~ 121 (437)
.|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus 204 ~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999975 5778999999999999999999887
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.6e-24 Score=207.35 Aligned_cols=115 Identities=29% Similarity=0.431 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 121 ~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 195 (256)
T 1vpl_A 121 SEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195 (256)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence 3445688999999999988877654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|+|||+++|++. ++..++|++++|++|++++.|+++++.+
T Consensus 196 g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 196 GLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999974 6778899999999999999999887754
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=2.8e-24 Score=214.13 Aligned_cols=117 Identities=17% Similarity=0.271 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++.+|.++ ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34567789999999999998887765 4699999999999999999999999999999999999999999888876
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+ .|.|+|+++|+. .++..++||+++|++|+++..|+++++.+
T Consensus 186 ~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 186 RANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 5 699999999996 57899999999999999999999988743
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=3.3e-24 Score=215.09 Aligned_cols=117 Identities=24% Similarity=0.387 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||.+..+.++ ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 45677789999999999998777655 5699999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
++ |.|+|+++|++ .++..++||+++|++|+++..|+++++.+
T Consensus 181 ~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 181 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 74 99999999996 57999999999999999999999998743
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=1.9e-24 Score=204.34 Aligned_cols=113 Identities=23% Similarity=0.325 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 3 NDEINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++..+++.++++.+||.+.. +..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 118 GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 455667899999999998643 5544 5799999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++ |.|||+++|++. +.+++|++++|++|+++..|++++.
T Consensus 193 ~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 193 EEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 75 999999999975 4589999999999999999987754
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.91 E-value=1.8e-24 Score=203.02 Aligned_cols=109 Identities=26% Similarity=0.317 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
++.+++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 115 KEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4456789999999999988776654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~ 119 (437)
|+|||+++|++. .+ +++|++++|++|++++.|+.
T Consensus 190 g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 190 GTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 999999999964 45 89999999999999999863
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=1.9e-24 Score=207.98 Aligned_cols=113 Identities=22% Similarity=0.367 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLK 78 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~ 78 (437)
+.+++++++++.+||.+..+..++ .|||||||||+||++|+. +|++|+|||||+|||+.++.++++.|+
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 456789999999999988777654 699999999999999999 999999999999999999999999999
Q ss_pred HHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 79 CIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 79 ~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++++ |.|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus 192 ~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 192 QLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99875 57999999996 4688899999999999999999998763
No 12
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=2e-24 Score=204.75 Aligned_cols=111 Identities=24% Similarity=0.361 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 85 (437)
+++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 5688999999999988777654 6999999999999999999999999999999999999999999999976 499
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
|||+++|++. ++..++|++++|++|+++..|+++++.
T Consensus 179 tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 179 PILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999964 678899999999999999999988764
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=5.6e-24 Score=211.98 Aligned_cols=116 Identities=23% Similarity=0.356 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++.+|.+. +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|++++
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34566789999999999998877665 4699999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7 499999999996 5788999999999999999999998774
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2.7e-24 Score=203.93 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++.+++++++++.++ |.+..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 345567889999995 987766655 46999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 188 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 188 EGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 8999999999974 678899999999999999999987663
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=6.5e-24 Score=211.88 Aligned_cols=116 Identities=23% Similarity=0.375 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++..+.++ +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 34566789999999999998877665 4699999999999999999999999999999999999999999999997
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 188 ~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 188 SRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 499999999996 4788999999999999999999998774
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=1.1e-23 Score=211.60 Aligned_cols=116 Identities=24% Similarity=0.355 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++..+.++ ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 112 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 112 PRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186 (372)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999998877665 4699999999999999999999999999999999999999999999998
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 7 499999999996 5788999999999999999999998874
No 17
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=4.1e-24 Score=205.69 Aligned_cols=114 Identities=23% Similarity=0.388 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 5 EINDIVEETIIKMGLQ--ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+.+++++++++.+||. +..+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 186 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 3356789999999998 7777665 46999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+|+|||+++|++. .+..++|++++|++|+++..|+++++.+
T Consensus 187 ~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 187 LGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp TTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 7999999999985 5777899999999999999999887653
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=7.2e-24 Score=211.85 Aligned_cols=116 Identities=25% Similarity=0.365 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++..+.+. +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999998877655 4699999999999999999999999999999999999999999999997
Q ss_pred h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 499999999996 4788999999999999999999998874
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=7.8e-24 Score=202.24 Aligned_cols=111 Identities=26% Similarity=0.402 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (437)
+.+++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 445689999999999988777654 69999999999999999999999999999999999999999999999886
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
|+|||+++|++. .+.+++|++++|++|+ ++.|+++++
T Consensus 179 g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 179 NMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999974 6778999999999999 999998765
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=3.9e-24 Score=207.11 Aligned_cols=112 Identities=29% Similarity=0.456 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus 137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g 211 (279)
T 2ihy_A 137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211 (279)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence 345688999999999988877664 699999999999999999999999999999999999999999999998779
Q ss_pred CEE--EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 85 RIV--VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 85 ~tv--i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
+|| |+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 212 ~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 212 PTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp TTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999 99999975 67789999999999999999998765
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=7.3e-24 Score=211.58 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~- 82 (437)
++.+++++++++.+||++..+.+. ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 344578999999999998877665 46999999999999999999999999999999999999999999999977
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.|.|+|+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus 183 ~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 183 LGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 499999999996 47889999999999999999999988743
No 22
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=1.1e-23 Score=202.70 Aligned_cols=122 Identities=26% Similarity=0.371 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
++.+++++++++.+||. +..+..++ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 137 ~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~ 212 (267)
T 2zu0_C 137 FDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212 (267)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 34456899999999996 45555443 14999999999999999999999999999999999999999999999977
Q ss_pred cCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHHHHHHHHcCC
Q 013741 83 DGRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAVKFFAEAGF 131 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~ 131 (437)
+|+|||+++|++. .+..+ +|++++|++|++++.|+++++.. .++.|+
T Consensus 213 ~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 213 GKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp SSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred cCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 7999999999975 45565 89999999999999999987643 344444
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=1.1e-23 Score=211.23 Aligned_cols=116 Identities=20% Similarity=0.320 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++.+++++++++.+||++.++.+. ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 114 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999998877655 4699999999999999999999999999999999999999999999998
Q ss_pred hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 189 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 189 QKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 74 99999999996 4788999999999999999999998874
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=8.7e-24 Score=201.62 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCC-cccccccccCcccCC-CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 5 EINDIVEETIIKMGL-QACAETKIGNWHLRG-ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+..++++++++.+|| .+..++.++ . |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 117 EFWTKVKKALELLDWDESYLSRYLN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp HHHHHHHHHHHHHTCCGGGGGSBTT-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 445678999999999 577776554 5 999999999999999999999999999999999999999999999977
Q ss_pred cCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhH
Q 013741 83 DGRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKM 121 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~ 121 (437)
+|+|||+++|++. .+..+ +|++++|++|++++.|+++.
T Consensus 192 ~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 192 PNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 8999999999975 56666 59999999999999999873
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=2.3e-23 Score=198.47 Aligned_cols=110 Identities=23% Similarity=0.341 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-------VLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~-------ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++.+||.+..+..+ ..|||||||||+||++|+.+|+ +|+|||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 467899999999998877655 4699999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
++++|+|||+++|++. .+.+++|++++|++|+++..|+++++
T Consensus 179 l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 179 LSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp HHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9878999999999964 67789999999999999999998765
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=3.9e-23 Score=205.60 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
++++++++.+||++..|.+. +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++++ .|.|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 68999999999998877665 46999999999999999999999999999999999999999999999976 5999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999996 4788999999999999999999998764
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=1.7e-22 Score=192.35 Aligned_cols=113 Identities=23% Similarity=0.366 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++++++.+++.+..+.... +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 467788888998876654321 23457899999999999999999999999999999999999999999999995
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. .+ ..+|++++|++|++++.|+++++.
T Consensus 193 -~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 193 -KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp -TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 5899999999976 34 459999999999999999988764
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=2e-22 Score=193.36 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--- 176 (263)
T 2pjz_A 105 RDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--- 176 (263)
T ss_dssp HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---
Confidence 45789999999998 8777665 46999999999999999999999999999999999999999999998754
Q ss_pred EEEEEecCCchHHHhhcC-eEEEEeCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFD-DLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd-~v~~L~~G~~v~~G~~~~~~ 123 (437)
|+|+++|++. ++.+++| ++++|++|++++.|+++++.
T Consensus 177 tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 177 EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 9999999974 5778999 99999999999999998764
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=2.3e-22 Score=193.93 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=93.8
Q ss_pred HHHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741 9 IVEETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR 85 (437)
Q Consensus 9 ~v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 85 (437)
.++++++.+ ||.+..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+
T Consensus 134 ~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~ 208 (271)
T 2ixe_A 134 GAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR 208 (271)
T ss_dssp TCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS
T ss_pred hHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence 345677777 666555544 457999999999999999999999999999999999999999999999875 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
|||+++|++. .+ ..+|++++|++|+++..|+++++.+
T Consensus 209 tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 209 TVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999975 44 4599999999999999999987643
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.87 E-value=1.7e-22 Score=191.81 Aligned_cols=113 Identities=25% Similarity=0.316 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
++++++++.+++.+..+.... +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 467889999999877654321 23457899999999999999999999999999999999999999999999997
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus 187 -~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 187 -KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp -TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred -CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 6899999999975 44 469999999999999999988764
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=7.8e-22 Score=193.03 Aligned_cols=113 Identities=27% Similarity=0.420 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+++.++..++.+. .++.+|. ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 456667777776553 3455553 45689999999999999999999999999999999999999999999998
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+ ++|+|+++|+++ .+.. +|+|++|++|+++..|+.+++.+
T Consensus 237 ~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 237 CA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred cC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 65 689999999975 4554 99999999999999999998764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.87 E-value=1.2e-21 Score=187.95 Aligned_cols=112 Identities=23% Similarity=0.381 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++.+.++.++|.+.. |+.++ ..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 123 EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 4566778877776543 33343 346789999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
++ |+|||+++|++.. + ..+|++++|++|+++..|+++++.
T Consensus 202 ~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 202 RK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp TT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred cC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 65 8999999999863 4 459999999999999999998764
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=197.11 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+++++++++.++|.+..+...+. ...+.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++
T Consensus 122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 45788999999999877765532 122349999999999999999999999999999999999999999999986
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. .+.|+|+++|++. ....+||+++|++|+++..|+++++.+
T Consensus 202 ~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 202 F-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp T-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred h-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 5789999999963 456799999999999999999998753
No 34
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.84 E-value=9.6e-21 Score=201.97 Aligned_cols=113 Identities=26% Similarity=0.388 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..|+.+. .||.+|. ....||||||||++|||+|+++|++++|||||+|||+.+...+.+.|++
T Consensus 450 ~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 4578889999888654 4666654 4568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++ |+|+|+++|+++ .+ +.+|++++|++|+++..|+.+++.
T Consensus 529 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 529 LMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred Hhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 876 799999999975 34 569999999999999999988764
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.84 E-value=1.2e-20 Score=200.65 Aligned_cols=114 Identities=23% Similarity=0.319 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..++.+. .||.+|. ....||||||||++|||+|+++|++++|||||+|||+.+..++.+.|++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 3567888888888764 3555654 4578999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+++ |+|+|+++|+++. + +.+|++++|++|+++..|+.+++.+
T Consensus 526 ~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 526 LQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 875 8999999999863 4 5799999999999999999988754
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=179.25 Aligned_cols=91 Identities=19% Similarity=0.309 Sum_probs=81.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCEEEEEecCCchHHHhhcCeEE
Q 013741 30 WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK---CIALDGRIVVCSIHQPSSHLFYLFDDLL 106 (437)
Q Consensus 30 ~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~t~hqp~~~i~~~fd~v~ 106 (437)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+++.|+ +++ +|+|+|+++|++.. + ..+|+++
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~ 199 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVII 199 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEE
Confidence 3567899999999999999999999999999999999999999999995 443 58999999999864 4 5799999
Q ss_pred EEeCCeEEEeeChhHHH
Q 013741 107 LLSNGETIYFGDAKMAV 123 (437)
Q Consensus 107 ~L~~G~~v~~G~~~~~~ 123 (437)
+|++|+++..|+++++.
T Consensus 200 ~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 200 VMSGGKISEMGSYQELL 216 (237)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEeCCEEEEeCCHHHHh
Confidence 99999999999998764
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.84 E-value=7e-21 Score=179.14 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=89.7
Q ss_pred HHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 013741 10 VEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIA 81 (437)
Q Consensus 10 v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~ 81 (437)
+++.++.+++.+..+. .++ .....||||||||++||++|+.+|++++|||||+|||+.++..+.+. +++++
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 4456666666544332 232 23568999999999999999999999999999999999999999997 45654
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus 179 -~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 179 -ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 4899999999974 44 459999999999999999988764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.84 E-value=1.1e-20 Score=201.06 Aligned_cols=113 Identities=26% Similarity=0.375 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
+++++++++..|+.+.. ||.+|. ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 45688889988887654 455553 4568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+++ |+|+|+++|+++ .+ +.+|++++|++|+++..|+.+++.
T Consensus 526 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 526 LQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 865 899999999985 34 579999999999999999998775
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=3.6e-20 Score=197.12 Aligned_cols=113 Identities=26% Similarity=0.372 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.+.++..++.+ -.||.+|. ....||||||||++|||+|+.+|++|+|||||++||+.+..++.+.|+++
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 34455555555543 34566654 55689999999999999999999999999999999999999999999998
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +|+|+|+++|+++. ...+|++++|++|+++..|+.+++.+
T Consensus 526 ~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 526 T-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp S-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred C-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 58999999999753 46899999999999999999998764
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.82 E-value=5e-20 Score=195.76 Aligned_cols=113 Identities=27% Similarity=0.403 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+.+.+.++..++.+ -.||.+|. ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 45666777776654 34566653 45689999999999999999999999999999999999999999999998
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
. +|+|+|+++|+++. + +.+|++++|++|+++..|+++++.+
T Consensus 524 ~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 524 S-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp T-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred c-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5 47899999999864 4 5699999999999999999998754
No 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-20 Score=198.32 Aligned_cols=111 Identities=16% Similarity=0.310 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
+.++++++.+||.+.++..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|
T Consensus 446 ~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t 520 (608)
T 3j16_B 446 QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520 (608)
T ss_dssp HHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 46788999999998777665 46999999999999999999999999999999999999999999999975 6999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK 124 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~~~ 124 (437)
||+++|+. .++..++||+++|++ |+++..|+++++..
T Consensus 521 viivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 521 AFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp EEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999996 578899999999986 99999999987764
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=5.2e-21 Score=178.04 Aligned_cols=96 Identities=18% Similarity=0.296 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
+++++++++.+||++. +..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4678999999999876 5544 579999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCchHHHhhcCeEEEEe
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
||+++|++. ++..++|++++++
T Consensus 186 iiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 186 VIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp EEEEESSCC-TTSSEEEEGGGGB
T ss_pred EEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999985 5777788877553
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=4.2e-20 Score=197.04 Aligned_cols=112 Identities=21% Similarity=0.336 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 9 IVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 9 ~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
.+++.++..++.+. .||.+|. ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 460 EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 45566666666543 3444442 346799999999999999999999999999999999999999999999986
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+|+|+|+++|+++ .+ ..+|++++|++|+++..|+.+++.+
T Consensus 539 -~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 539 -EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp -TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred -CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5899999999986 34 4599999999999999999998754
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=6.4e-20 Score=178.35 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=88.4
Q ss_pred HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 013741 10 VEETIIKMGLQACAE-------TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIA 81 (437)
Q Consensus 10 v~~~l~~l~L~~~~~-------~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~ 81 (437)
+++.++.+++.+..+ +.++ ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+. +++++
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~ 207 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence 455666667654432 2222 23568999999999999999999999999999999999999999997 45554
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~ 123 (437)
+|+|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus 208 -~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 208 -ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp -TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 4899999999974 44 569999999999999999998764
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=9.7e-20 Score=193.80 Aligned_cols=111 Identities=19% Similarity=0.279 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
++++++++.+||.+.++..++ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|
T Consensus 450 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 450 FYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp HHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 568899999999887777664 6999999999999999999999999999999999999999999999975 6899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK 124 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~~~ 124 (437)
||+++|++ ..+..++||+++|++ |+++..|+++++.+
T Consensus 525 vi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 525 ALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999996 478889999999986 88889999987754
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=7e-20 Score=192.69 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=100.2
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
++++++++.+|+.+..+..++ .|||||||||.||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 467889999999877776664 6999999999999999999999999999999999999999999999975 6999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHHHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK 124 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~~~ 124 (437)
||+++|++ .++..+|||+++|++ |+++..|+++++.+
T Consensus 455 vi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 455 ALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999996 578899999999985 88999999987654
No 47
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=2.6e-19 Score=193.40 Aligned_cols=109 Identities=24% Similarity=0.338 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+++.+.++.+||.+ ..+. .+..|||||||||+||++|+.+| ++|+|||||+|||+.++.++++.|++++++
T Consensus 521 ~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~ 595 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 45677888899864 2333 44579999999999999999987 499999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. . ...+|++++| ++|++++.|+++++.
T Consensus 596 g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 596 GDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp TCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 999999999975 3 4679999999 899999999999874
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=2.6e-19 Score=188.14 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 86 (437)
+.++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .|.|
T Consensus 364 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~t 438 (538)
T 3ozx_A 364 WFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438 (538)
T ss_dssp HHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 457889999999887776654 6999999999999999999999999999999999999999999999986 6899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHH
Q 013741 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMA 122 (437)
Q Consensus 87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~ 122 (437)
||+++|++ .++..+|||+++|++ |.....|++.+.
T Consensus 439 vi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 439 TFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 99999996 478899999999985 666667766544
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.79 E-value=2.9e-19 Score=193.08 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=92.9
Q ss_pred HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Q 013741 13 TIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89 (437)
Q Consensus 13 ~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 89 (437)
+++.+||.+. .|..+ ..|||||||||+||++|+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||+
T Consensus 185 ~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 5888888764 45555 4699999999999999999998 99999999999999999999999999988999999
Q ss_pred EecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 90 SIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 90 t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
++|++. . ...+|++++| ++|++++.|+++++.
T Consensus 260 vtHd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 260 VEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp ECCCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred EeCCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999975 3 4569999999 899999999998764
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.79 E-value=2.7e-19 Score=190.43 Aligned_cols=99 Identities=25% Similarity=0.400 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||++..|..++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus 207 ~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 281 (607)
T 3bk7_A 207 GKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281 (607)
T ss_dssp SCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 468899999999988887665 699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCe
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
|+++|++. .+..++|++++|++|.
T Consensus 282 IivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 282 LVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EEECSCHH-HHHHHCSEEEEEESCT
T ss_pred EEEecChH-HHHhhCCEEEEECCCc
Confidence 99999964 6888999999998654
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=2.2e-19 Score=188.93 Aligned_cols=99 Identities=25% Similarity=0.383 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||.+..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus 137 ~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 211 (538)
T 1yqt_A 137 GKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211 (538)
T ss_dssp SCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 468899999999887777664 699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCe
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
|+++|+. .++..++|++++|++|.
T Consensus 212 i~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 212 LVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp EEECSCH-HHHHHHCSEEEEEEEET
T ss_pred EEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 9999996 47889999999998653
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4e-19 Score=188.91 Aligned_cols=103 Identities=25% Similarity=0.391 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tv 274 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEE
T ss_pred HHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 678999999999988887765 699999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYF 116 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~ 116 (437)
|+++|+. .++..++|++++|++|..+|.
T Consensus 275 i~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 275 ICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp EEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred EEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 9999996 578999999999998776553
No 53
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=8.4e-19 Score=153.67 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=73.5
Q ss_pred CcccCCCCHHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 29 NWHLRGISSGEKKRLSIS------IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 29 ~~~~~~lSgGerkRv~ia------~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
+..++.||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|++ ++.+.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999886 889999999999999999999999999999999988899999999997 467899
Q ss_pred CeEEEEe--CCe
Q 013741 103 DDLLLLS--NGE 112 (437)
Q Consensus 103 d~v~~L~--~G~ 112 (437)
|++++|+ +|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 9999994 554
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.77 E-value=1.4e-18 Score=191.62 Aligned_cols=109 Identities=23% Similarity=0.382 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+++++++++.+||. +..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~ 596 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGI 596 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS
T ss_pred HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCC
Confidence 46789999999994 66777665 5999999999999999999999999999999999999999999998 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAVK 124 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~~ 124 (437)
|+|+++|++ ..+.+++|++++|++|+++ +.|+.++..+
T Consensus 597 tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 597 TSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999996 5788999999999999997 7899887653
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=3.2e-19 Score=187.38 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 87 (437)
++++++++.+|+.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |.||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~ti 190 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEE
T ss_pred HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence 367899999999988887665 6999999999999999999999999999999999999999999999976 8999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741 88 VCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (437)
Q Consensus 88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~ 115 (437)
|+++|+. .++..++|++++|++|..+|
T Consensus 191 i~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 191 IVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp EEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred EEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 9999997 57899999999998765443
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.8e-18 Score=190.40 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+++.++|+.+||.... .| ..+..|||||||||.||++|+.+| ++|+|||||+|||+.+...+++.|++++++|
T Consensus 783 ~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G 858 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858 (916)
T ss_dssp HHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 5677899999997532 22 244579999999999999999876 7999999999999999999999999999899
Q ss_pred CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
.|||+++|++. . ...+|+|++| ++|++++.|+++++.
T Consensus 859 ~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 NTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 99999999974 4 4569999999 899999999999875
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=9.1e-19 Score=201.50 Aligned_cols=114 Identities=29% Similarity=0.409 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++.+.++++..++. +-.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|++
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 35677777777764 346888885 4457999999999999999999999999999999999999999999987
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+. +|+|+|+++|.++. ...+|+|++|++|+++..|+++++.+
T Consensus 1263 ~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1263 AR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp TS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred Hc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 54 57999999999864 45699999999999999999998875
No 58
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.76 E-value=2.6e-18 Score=187.72 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 7 NDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQ---PTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~---p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.++++++++.+||... .+.. +..|||||||||.||++|+.+ |++|+|||||+|||..+..++.+.|+++++
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~ 781 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD 781 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3578899999999863 3444 457999999999999999996 799999999999999999999999999999
Q ss_pred cCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 83 DGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 83 ~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
+|.|||+++|++. ++ ..+|++++| ++|++++.|+++++.
T Consensus 782 ~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 9999999999964 55 889999999 699999999998763
No 59
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=4.7e-18 Score=186.28 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+++.++++.+||.. ..+..+ ..|||||||||.||++|+.+| ++|+|||||+|||+.++..+++.|++++++
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 897 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 35678999999986 455544 469999999999999999865 999999999999999999999999999989
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
|.|||+++|++. . ...+|++++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999999999964 4 4689999999 689999999998764
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=4.8e-18 Score=187.09 Aligned_cols=108 Identities=23% Similarity=0.343 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 9 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+..+.++.+||.+. .|..+ ..|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~ 517 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 34567888999754 45544 4699999999999999999887 9999999999999999999999999998999
Q ss_pred EEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741 86 IVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (437)
Q Consensus 86 tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~ 123 (437)
|||+++|++. . ...+|++++| ++|++++.|+++++.
T Consensus 518 TvivVtHd~~-~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 518 TVIVVEHDEE-V-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEEEECCCHH-H-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEEEeCCHH-H-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 9999999963 3 4569999999 899999999998764
No 61
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=8.1e-18 Score=185.04 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
+++.++++.+||.. ..+..+ ..|||||||||.||++|+.+| ++|+|||||+|||..+...+.+.|++++++
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 915 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 34678999999976 445444 569999999999999999865 999999999999999999999999999989
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHHH
Q 013741 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAVK 124 (437)
Q Consensus 84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~~ 124 (437)
|.|||+++|++. .+ ..+|++++| ++|++++.|+++++.+
T Consensus 916 G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 999999999964 44 789999999 6899999999987753
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.74 E-value=3.3e-18 Score=196.83 Aligned_cols=114 Identities=27% Similarity=0.367 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 7 ~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
++++.++++..++. +-.||.||+ ....||||||||++|||++++||+||+||||||+||+.+...+.+.|++
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 35566777666543 446788886 3457999999999999999999999999999999999999999999998
Q ss_pred HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
+. +|+|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 600 ~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 600 AA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred Hh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 76 4799999999986 467799999999999999999998763
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.74 E-value=5.1e-18 Score=186.02 Aligned_cols=110 Identities=25% Similarity=0.368 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
|..+++ +.++.+||... .|..++ .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr 553 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR 553 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 455666 45899999854 565554 69999999999999999985 9999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA 122 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~ 122 (437)
+.|.|||+++|++. . ...+|+|++| ++|++++.|++++.
T Consensus 554 ~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 554 DLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp TTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred hCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 89999999999963 4 4679999999 79999999998765
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=8.4e-18 Score=184.90 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQ--PTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~--p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
+|..++++ .++.+||... .|..++ .|||||||||.||++|..+ |++|+|||||+|||+.....+.+.|++|
T Consensus 496 ~ei~~Rl~-~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 569 (993)
T 2ygr_A 496 KEIRSRLG-FLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL 569 (993)
T ss_dssp HHHHHHHH-HHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 34555663 5888999754 555554 6999999999999999999 4899999999999999999999999999
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHHH
Q 013741 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAVK 124 (437)
Q Consensus 81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~~ 124 (437)
++.|.|||+++|++. ....+|+|++| .+|++++.|++++..+
T Consensus 570 r~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 570 RDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 999999999999963 45679999999 6999999999987643
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.74 E-value=8.8e-18 Score=192.86 Aligned_cols=100 Identities=29% Similarity=0.447 Sum_probs=88.9
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 013741 21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY 100 (437)
Q Consensus 21 ~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~ 100 (437)
+-.||.+|+ ....||||||||++|||+|+++|+||+|||||+|||+.+...+.+.|++. .+|+|+|+++|+++. + .
T Consensus 1159 ~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~ 1234 (1284)
T 3g5u_A 1159 DKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-Q 1234 (1284)
T ss_dssp TGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-G
T ss_pred cccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-H
Confidence 445677774 45679999999999999999999999999999999999999999999885 468999999999864 5 5
Q ss_pred hcCeEEEEeCCeEEEeeChhHHHH
Q 013741 101 LFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 101 ~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+||+++|++|+++..|+++++.+
T Consensus 1235 ~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1235 NADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SCSEEEEEETBEEEEEECHHHHHH
T ss_pred cCCEEEEEECCEEEEECCHHHHHh
Confidence 599999999999999999998764
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.73 E-value=4.4e-18 Score=170.81 Aligned_cols=84 Identities=26% Similarity=0.370 Sum_probs=77.2
Q ss_pred cccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741 30 WHLRGISSGEKKRLSISIEIL------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 30 ~~~~~lSgGerkRv~ia~~l~------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd 103 (437)
..+..|||||||||+||++|+ .+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ....+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 356689999999999999999 799999999999999999999999999999888999999999974 477899
Q ss_pred eEEEEeCCeEEE
Q 013741 104 DLLLLSNGETIY 115 (437)
Q Consensus 104 ~v~~L~~G~~v~ 115 (437)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=9.7e-18 Score=192.52 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=88.1
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 013741 21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY 100 (437)
Q Consensus 21 ~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~ 100 (437)
+-.||.+|. ....||||||||++|||+|+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ .
T Consensus 514 ~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~ 589 (1284)
T 3g5u_A 514 HQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-R 589 (1284)
T ss_dssp TGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-T
T ss_pred ccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-H
Confidence 345677764 456799999999999999999999999999999999999999999998865 5899999999975 45 4
Q ss_pred hcCeEEEEeCCeEEEeeChhHHHH
Q 013741 101 LFDDLLLLSNGETIYFGDAKMAVK 124 (437)
Q Consensus 101 ~fd~v~~L~~G~~v~~G~~~~~~~ 124 (437)
.+|++++|++|++++.|+.++..+
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHH
T ss_pred cCCEEEEEECCEEEEECCHHHHHh
Confidence 599999999999999999998754
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1.6e-17 Score=181.47 Aligned_cols=110 Identities=22% Similarity=0.378 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
|..++++ .++.+||.+. .+..+ ..|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 4556776 6889999864 55555 469999999999999999999 4999999999999999999999999999
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHH
Q 013741 82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA 122 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~ 122 (437)
+.|.|||+++|++. +.+.+|+|++| .+|++++.|++++.
T Consensus 429 ~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 429 RGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp TTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred HcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 89999999999973 56789999999 79999999998765
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=9.4e-18 Score=185.13 Aligned_cols=103 Identities=26% Similarity=0.385 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCcc-c-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 7 NDIVEETIIKMGLQA-C-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~-~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+++++++++.+||.+ . .+..+ ++|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ |
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence 357889999999975 2 45544 469999999999999999999999999999999999999999988765 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
.|||+++|++ ..+.++||++++|.+|+++..|+
T Consensus 949 ~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 7999999996 46778999999999999988774
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.68 E-value=2e-16 Score=160.99 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE----
Q 013741 35 ISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL---- 108 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L---- 108 (437)
+|||||||+.||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|.|||+++|+| ++...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 689999999997 456889999999
Q ss_pred eCCeEEEee
Q 013741 109 SNGETIYFG 117 (437)
Q Consensus 109 ~~G~~v~~G 117 (437)
.+|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 899987654
No 71
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.56 E-value=2.5e-14 Score=128.36 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=72.4
Q ss_pred cCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741 32 LRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~ 107 (437)
+..||||||||++||++++. +|++++|||||+|||+.+...+.+.|++++++ .++|+++|++ .+...+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEEE
Confidence 46799999999999999975 46999999999999999999999999998754 6788888985 46789999997
Q ss_pred Ee--CCeE-EEeeChhHHHH
Q 013741 108 LS--NGET-IYFGDAKMAVK 124 (437)
Q Consensus 108 L~--~G~~-v~~G~~~~~~~ 124 (437)
+. +|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 75 5543 23344444433
No 72
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.55 E-value=8.3e-15 Score=145.46 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=69.9
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741 31 HLRGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 31 ~~~~lSgGerk------Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~ 104 (437)
.++.||||||| |+++|++++.+|++|+|||||+|||+..+..+.+.|+++.++|.+||+++|++ ++.+.+|+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45689999999 56777888889999999999999999999999999999988889999999995 47889999
Q ss_pred EEEEe
Q 013741 105 LLLLS 109 (437)
Q Consensus 105 v~~L~ 109 (437)
++.|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.55 E-value=6.3e-15 Score=154.46 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=71.0
Q ss_pred cCCC-CHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741 32 LRGI-SSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 32 ~~~l-SgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
+..| ||||||||+||++|+.+| ++|+|||||+|||..++..+.+.|+++++ |.|||+++|+|. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 899999999974 45679999999
Q ss_pred eCC
Q 013741 109 SNG 111 (437)
Q Consensus 109 ~~G 111 (437)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 765
No 74
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.55 E-value=4.1e-15 Score=148.45 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=77.1
Q ss_pred cCcccC-CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741 28 GNWHLR-GISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (437)
Q Consensus 28 g~~~~~-~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~ 97 (437)
++..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++| +..
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~- 332 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP- 332 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT-
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc-
Confidence 344566 79999999999999999 8999999999999999999999999998864 68888888 432
Q ss_pred HHhhcCeEEEEeCCeEEEeeChhHH
Q 013741 98 LFYLFDDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 98 i~~~fd~v~~L~~G~~v~~G~~~~~ 122 (437)
.+|+++++++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998754
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.54 E-value=1.7e-14 Score=142.28 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=72.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE-
Q 013741 31 HLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL- 105 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v- 105 (437)
.+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.++|+++|++ ++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 34679999999999999997 5889999999999999999999999999985 578999999996 367889986
Q ss_pred -EEEeCCeE-EEeeChhH
Q 013741 106 -LLLSNGET-IYFGDAKM 121 (437)
Q Consensus 106 -~~L~~G~~-v~~G~~~~ 121 (437)
+++.+|+. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77777654 44444444
No 76
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.47 E-value=1.5e-13 Score=138.00 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHH
Q 013741 7 NDIVEETIIKMGLQAC-------AETKIGN----WHLRGISSGEKKRL------SISIEILTQ-PTVLLLDEPTSGLDSA 68 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~vg~----~~~~~lSgGerkRv------~ia~~l~~~-p~ll~lDEPtsgLD~~ 68 (437)
.+.+++.++.+++.+. .+..+.+ ..++.+|||||||+ ++|+++..+ |++++|||||+|||+.
T Consensus 242 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~ 321 (371)
T 3auy_A 242 QKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321 (371)
T ss_dssp HHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHH
Confidence 3456778888887651 1111111 34567999999988 557888889 9999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 69 SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 69 ~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
.+..+.+.|+++++ +.+||+++|+|. +...+|++++++
T Consensus 322 ~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 322 RRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCEEEEEE
Confidence 99999999998753 468999999974 578899999997
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.7e-15 Score=154.55 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHH
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIE--ILTQPTV----LLLDE-PTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~--l~~~p~l----l~lDE-PtsgLD~~~~~~i~~~l~~l~ 81 (437)
+++++++.+||.+..+ ++.|||||||||++|++ |+.+|++ |+||| ||+|||+. ...+.+.+++
T Consensus 217 ~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~-- 286 (460)
T 2npi_A 217 NKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK-- 286 (460)
T ss_dssp CBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--
T ss_pred HHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--
Confidence 3445666677766554 35799999999999999 9999999 99999 99999998 4444444443
Q ss_pred hcCCEEEEEecCCch-----HHHhhcCe-----EEEEe-CCeEEEeeChhHH
Q 013741 82 LDGRIVVCSIHQPSS-----HLFYLFDD-----LLLLS-NGETIYFGDAKMA 122 (437)
Q Consensus 82 ~~g~tvi~t~hqp~~-----~i~~~fd~-----v~~L~-~G~~v~~G~~~~~ 122 (437)
.|.|+|+++|+... ++.+++|+ +++|+ +|+++ .|++++.
T Consensus 287 -~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 -LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp -TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred -hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 47899999999761 55688999 99999 99999 9988655
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.40 E-value=3.2e-13 Score=121.75 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=65.8
Q ss_pred ccCCCCHHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec--CCchHHHhh
Q 013741 31 HLRGISSGEKKRLSISIE-----ILTQPTVLLLDE--PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH--QPSSHLFYL 101 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~-----l~~~p~ll~lDE--PtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h--qp~~~i~~~ 101 (437)
++..||||||||++||++ ++.+|++++||| ||++||+.....+.+.+++ .+.|+|+++| +....+..+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHH
Confidence 455799999999999996 999999999999 9999999999999888876 5677999997 456677888
Q ss_pred cCeEEEEeCCeEEE
Q 013741 102 FDDLLLLSNGETIY 115 (437)
Q Consensus 102 fd~v~~L~~G~~v~ 115 (437)
+|+ .+|+++.
T Consensus 150 ~~r----~~~~i~~ 159 (178)
T 1ye8_A 150 RRL----PGAVLIE 159 (178)
T ss_dssp HTC----TTCEEEE
T ss_pred Hhc----CCcEEEE
Confidence 887 4566655
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.35 E-value=2.4e-13 Score=121.49 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA----------------SAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~----------------~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
..|||||||++||++++.+|++++|||||+|||+. .+.++.+.|++++++|.|+|+++|++.
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 35999999999999999999999999999999999 668999999999888999999999964
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.34 E-value=2.1e-12 Score=132.19 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741 33 RGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L 108 (437)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ .....+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999876688999999994 467889999999
Q ss_pred e
Q 013741 109 S 109 (437)
Q Consensus 109 ~ 109 (437)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.16 E-value=1.3e-12 Score=120.76 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 38 GerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
|||||++||++|+.+|++|+|||||+| ++..+.+.|+++ ++|.||| ++|++.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999999999999999999999999999 889999999998 6789999 999974
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.13 E-value=2.7e-11 Score=127.07 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=74.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhcCCEEEEEecCCc---------h
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-----SAFFVIQVLKCIALDGRIVVCSIHQPS---------S 96 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~-----~~~~i~~~l~~l~~~g~tvi~t~hqp~---------~ 96 (437)
.+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+++.|.|+|+++|++. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 45679999999999999999999999999 99999999 999999999999989999999999972 4
Q ss_pred HHHhhcCeEEEEeCCe
Q 013741 97 HLFYLFDDLLLLSNGE 112 (437)
Q Consensus 97 ~i~~~fd~v~~L~~G~ 112 (437)
.+.+++|++++|.+|+
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 5678999999999887
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.98 E-value=3.1e-11 Score=122.37 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHH--HHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSG--EKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQ 75 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--erkRv~ia~~l~~----------~p~ll~lDEPtsgLD~~~~~~i~~ 75 (437)
++++++++.++|.+.... + .+||| ||||+.||++|+. +|++++|||||+|||+.++.++.+
T Consensus 135 ~~~~~~L~~~~L~~~~~~-~------~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFF-I------IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCSEE-E------EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccCCe-E------EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 357889999998765322 1 28999 9999999999999 999999999999999999999999
Q ss_pred HHHHHH-----hcC----CEEEEEecCCch-HHHhhcCeEE-EEeCC
Q 013741 76 VLKCIA-----LDG----RIVVCSIHQPSS-HLFYLFDDLL-LLSNG 111 (437)
Q Consensus 76 ~l~~l~-----~~g----~tvi~t~hqp~~-~i~~~fd~v~-~L~~G 111 (437)
.++++. +.| .++++++|.... .+.+++|++. .|.+|
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 999985 332 678899998653 3677777664 34444
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.94 E-value=1.6e-09 Score=104.77 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCCCHHH-HHHHHHHHHHHhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh-cCCEEEEEecCCc-h------
Q 013741 33 RGISSGE-KKRLSISIEILTQPTVLLLDEPTS---G---LDS-ASAFFVIQVLKCIAL-DGRIVVCSIHQPS-S------ 96 (437)
Q Consensus 33 ~~lSgGe-rkRv~ia~~l~~~p~ll~lDEPts---g---LD~-~~~~~i~~~l~~l~~-~g~tvi~t~hqp~-~------ 96 (437)
..+|.+| ++|+. ++++..+|+++++||||+ | +|. ....++++.|+++++ .|.|||+++|... .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 3588998 66777 999999999999999999 5 555 667889999999987 4999999999962 2
Q ss_pred --------------HHHhhcCeEEEEeCCeE
Q 013741 97 --------------HLFYLFDDLLLLSNGET 113 (437)
Q Consensus 97 --------------~i~~~fd~v~~L~~G~~ 113 (437)
.+.+.+|+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.93 E-value=8.5e-10 Score=122.15 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=75.8
Q ss_pred ccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEE
Q 013741 31 HLRGISSGEKKRLSISIEI--LTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLL 106 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l--~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~ 106 (437)
..+++|+|++++..++..+ +++|++++|||||+|+|+.....+ ...++.+++ .|.++|+++|++ ++..++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 3468999999999999988 999999999999999999999888 677888887 599999999994 5778999999
Q ss_pred EEeCCeEEEeeChhHH
Q 013741 107 LLSNGETIYFGDAKMA 122 (437)
Q Consensus 107 ~L~~G~~v~~G~~~~~ 122 (437)
.+.+|++...++.+++
T Consensus 796 ~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 796 TVNNLHVTALTTEETL 811 (934)
T ss_dssp TEEEEEEEEEEETTEE
T ss_pred eeEeeEEEEEecCCcE
Confidence 9999999998876643
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.70 E-value=2.6e-09 Score=105.45 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741 37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~ 113 (437)
|||+||++|+++|..+|+++++||||+ .++.+.|+.+...+.|+++|+|.++ ..+.+||+++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 899999999999999999999999998 2456778777655568999999976 6788999999988763
No 87
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.64 E-value=5.7e-08 Score=89.50 Aligned_cols=78 Identities=12% Similarity=-0.019 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCc-------hHHHhh
Q 013741 34 GISSGEKKRLSISIEILTQPT--VLLLDEPTSGL--DSASAFFVIQVLKCIAL-DGRIVVCSIHQPS-------SHLFYL 101 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgL--D~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~-------~~i~~~ 101 (437)
..|.+|.++...+.....+|+ ++++||||+++ |+....++++.|+++++ .|.|||+++|... ..+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 358999888888877778999 99999999887 99999999999999976 5899999999973 348889
Q ss_pred cCeEEEEeCC
Q 013741 102 FDDLLLLSNG 111 (437)
Q Consensus 102 fd~v~~L~~G 111 (437)
+|++++|++.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999854
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.62 E-value=3.6e-10 Score=110.10 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..|||||||| |++++.+|+||+ |++||+.+...+.. .+|++. ..+.+|++ +|++|+
T Consensus 199 ~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~ 254 (305)
T 2v9p_A 199 YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGE 254 (305)
T ss_dssp CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---
T ss_pred cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCE
Confidence 4799999999 999999999999 99999999888752 167764 35789999 999999
Q ss_pred EEEeeChhHHHHHHHH
Q 013741 113 TIYFGDAKMAVKFFAE 128 (437)
Q Consensus 113 ~v~~G~~~~~~~~f~~ 128 (437)
+++.|+.++...+|.+
T Consensus 255 iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 255 QPFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHH
Confidence 9999999988666654
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.61 E-value=4.9e-08 Score=109.32 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA-FFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
.+|+|++ +++++++++++|++++||||++|+|+... ..+...|+.++++ |.++|+++|++. .+...+|++.++ +|
T Consensus 851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence 4566555 59999999999999999999999999985 5578899999886 999999999964 566778998887 58
Q ss_pred eEE--EeeChh
Q 013741 112 ETI--YFGDAK 120 (437)
Q Consensus 112 ~~v--~~G~~~ 120 (437)
++. +.|+++
T Consensus 928 ~~~~~~~~~~~ 938 (1022)
T 2o8b_B 928 HMACMVENECE 938 (1022)
T ss_dssp EEEEC------
T ss_pred eEEEEEecCcc
Confidence 887 455543
No 90
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.61 E-value=3.1e-10 Score=104.18 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=68.6
Q ss_pred HHHHHHHHHH------HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC----CHHHHHHH
Q 013741 4 DEINDIVEET------IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGL----DSASAFFV 73 (437)
Q Consensus 4 ~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgL----D~~~~~~i 73 (437)
++.++++++. ++.+|+.+.++... +.|| +|+.+|++++|||||+|+ |+..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l 166 (207)
T 1znw_A 103 QPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRL 166 (207)
T ss_dssp HHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3444555555 55555555544433 3466 889999999999999998 78899999
Q ss_pred HHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 74 IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 74 ~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
.+.++++++ .|.|+|+++|++ .++..++|++++|.
T Consensus 167 ~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 167 DTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 999999986 689999999996 57999999999985
No 91
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.59 E-value=3.4e-08 Score=109.09 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=64.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEE-E
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLL-L 108 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~-L 108 (437)
...+|+|++|++.|+++ +++|++++|||||+|||+.....+. ..++.+++ .|.++|+++|++ ++.+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 35689999999999988 8999999999999999999999998 78888876 699999999996 35566665421 3
Q ss_pred eCCeEEE
Q 013741 109 SNGETIY 115 (437)
Q Consensus 109 ~~G~~v~ 115 (437)
.++++.+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444433
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.56 E-value=8.4e-08 Score=91.97 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=60.6
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-c
Q 013741 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS--GLDSASA---FFVIQVLKCIAL-D 83 (437)
Q Consensus 10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts--gLD~~~~---~~i~~~l~~l~~-~ 83 (437)
++++++.+++.+..+. .+..+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++++ .
T Consensus 99 ~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp HHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 3455677776655443 3456999998876 57888999999999999 9998544 888999999975 6
Q ss_pred CCEEEEEecCCc
Q 013741 84 GRIVVCSIHQPS 95 (437)
Q Consensus 84 g~tvi~t~hqp~ 95 (437)
|.|||+++|+..
T Consensus 171 g~tvi~i~H~~~ 182 (279)
T 1nlf_A 171 GCSIVFLHHASK 182 (279)
T ss_dssp CCEEEEEEEC--
T ss_pred CCEEEEEecCCC
Confidence 999999999864
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.47 E-value=1.1e-07 Score=88.86 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhcCCEEEEEecCCchHH---------Hhhc
Q 013741 37 SGEKKRLSISIEILTQPTVLLLDEPTSGLD-----SASAFFVIQVLKCIALDGRIVVCSIHQPSSHL---------FYLF 102 (437)
Q Consensus 37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD-----~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i---------~~~f 102 (437)
.++..+......-..+|+++++||||++|| ...+..+.+.++.+++.|.|||+++|++.. . ..++
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEe
Confidence 344444444444468999999999999998 666667999999998889999999999753 4 5788
Q ss_pred -CeEEEEe
Q 013741 103 -DDLLLLS 109 (437)
Q Consensus 103 -d~v~~L~ 109 (437)
|++++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999996
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.33 E-value=1.1e-06 Score=80.34 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCCHHH--HHHHHHHHHHHhC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHh-cCCEEEEEecCCch-----
Q 013741 34 GISSGE--KKRLSISIEILTQ-PTVLLLDEPTSGLDSAS--------AFFVIQVLKCIAL-DGRIVVCSIHQPSS----- 96 (437)
Q Consensus 34 ~lSgGe--rkRv~ia~~l~~~-p~ll~lDEPtsgLD~~~--------~~~i~~~l~~l~~-~g~tvi~t~hqp~~----- 96 (437)
..++++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++ .|.|+|++.|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 355664 5678888899886 99999999999999733 3556777888887 48999999997542
Q ss_pred -------HHHhhcCeEEEEeCC
Q 013741 97 -------HLFYLFDDLLLLSNG 111 (437)
Q Consensus 97 -------~i~~~fd~v~~L~~G 111 (437)
.+.+.+|.+++|++.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 577899999999854
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.31 E-value=1.3e-07 Score=98.96 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=59.2
Q ss_pred HHHHHHHHHH-hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH--------HHhhcCeEE
Q 013741 41 KRLSISIEIL-TQPTVLLLDEPTS-----GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH--------LFYLFDDLL 106 (437)
Q Consensus 41 kRv~ia~~l~-~~p~ll~lDEPts-----gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~--------i~~~fd~v~ 106 (437)
+.-.+..+|- .+|+++++||||+ +||+..+.++.+.++++++.|.|||+++|++... ...++|+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 3444555553 6899999999998 5699999999999999998899999999998642 355699999
Q ss_pred EEeCCe
Q 013741 107 LLSNGE 112 (437)
Q Consensus 107 ~L~~G~ 112 (437)
+|++|+
T Consensus 206 ~L~~~~ 211 (525)
T 1tf7_A 206 ILRNVL 211 (525)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999843
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.29 E-value=1.8e-07 Score=91.02 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc--------hHHHhh
Q 013741 33 RGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS--------SHLFYL 101 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~--------~~i~~~ 101 (437)
+.|| |||+.||++++.+|+ +|+|| ||+|||+... ++++.+ .|.|+|+++|... +.....
T Consensus 203 ~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~ 272 (302)
T 3b9q_A 203 EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEEL 272 (302)
T ss_dssp HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHH
Confidence 4588 999999999999999 99999 9999998754 355654 5899999999532 223344
Q ss_pred cCeEEEEeCCeE
Q 013741 102 FDDLLLLSNGET 113 (437)
Q Consensus 102 fd~v~~L~~G~~ 113 (437)
.+.+.++..|+.
T Consensus 273 ~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 273 GIPVKFIGVGEA 284 (302)
T ss_dssp CCCEEEEECSSS
T ss_pred CCCEEEEeCCCC
Confidence 567888888764
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.22 E-value=1e-06 Score=80.98 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCcccccccccCc-ccCCCCHHHH-HHHHHHHHHHh-------CCCEEEEeCCCCCCCHHH---------
Q 013741 8 DIVEETIIKMGLQACAETKIGNW-HLRGISSGEK-KRLSISIEILT-------QPTVLLLDEPTSGLDSAS--------- 69 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~-~~~~lSgGer-kRv~ia~~l~~-------~p~ll~lDEPtsgLD~~~--------- 69 (437)
+++..+.+..++... +...+- ..+..+++++ +++..+.+++. +|+++++||||+++|+..
T Consensus 74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 356666777776432 111111 1233455554 44677777777 999999999999999842
Q ss_pred ---HHHHHHHHHHHHh-cCCEEEEEecCCc---hHHHhhcCeEEEEeCCe
Q 013741 70 ---AFFVIQVLKCIAL-DGRIVVCSIHQPS---SHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ---~~~i~~~l~~l~~-~g~tvi~t~hqp~---~~i~~~fd~v~~L~~G~ 112 (437)
..++++.|+++++ .|.|||+++|... ..+.+.+|++++|++|+
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 2378888888876 5999999999532 23778899999998754
No 98
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.19 E-value=1.4e-07 Score=90.32 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp 94 (437)
..||||||||+.+|++++. ++++|||+.|||+.. .+.++.+++. .++|+++|.-
T Consensus 97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTG
T ss_pred HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecc
Confidence 4699999999999999775 999999999999887 5566667666 8999998873
No 99
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.16 E-value=1e-06 Score=96.42 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
.+|+|++ ++..+...+++|++++||||++|+|+.....+ ...++.+++ .|.++|+++|++. +..++|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEE
Confidence 4566655 45555567899999999999999999888776 788999988 5999999999964 55788988778888
Q ss_pred eEEEeeC
Q 013741 112 ETIYFGD 118 (437)
Q Consensus 112 ~~v~~G~ 118 (437)
++.+...
T Consensus 746 ~~~~~~~ 752 (800)
T 1wb9_A 746 HLDALEH 752 (800)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 8776543
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.14 E-value=1.3e-06 Score=86.65 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcccccccccCc-ccCC-CCHHHHHHHHHHHHHH-------hCCCEEEEeCCCCCCCHHH---------
Q 013741 8 DIVEETIIKMGLQACAETKIGNW-HLRG-ISSGEKKRLSISIEIL-------TQPTVLLLDEPTSGLDSAS--------- 69 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~-~~~~-lSgGerkRv~ia~~l~-------~~p~ll~lDEPtsgLD~~~--------- 69 (437)
+++..+.+.+++... +...+- ..+. -|.++++++.++.+++ .+|+++++||||+++|+..
T Consensus 180 ~~i~~i~q~~~~~~~--~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r 257 (349)
T 1pzn_A 180 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 257 (349)
T ss_dssp HHHHHHHHTTTCCHH--HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHH
Confidence 455566666666421 111111 1111 2688999999999999 6899999999999999852
Q ss_pred ---HHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741 70 ---AFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 70 ---~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
..++++.|+++++ .|.|||++.|... ..-..|++...+.+|+++.++.
T Consensus 258 ~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 258 QQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 4677777888876 5899999999854 4444455566666776655443
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.13 E-value=1.6e-06 Score=94.40 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=54.5
Q ss_pred cCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 32 LRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASA-FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l--~~~p~ll~lDEP---tsgLD~~~~-~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
..++|+|+++++.++..+ +++|++++|||| |++||..+. ..+++.|++ .|.++|+++|++ ++.+++
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 357999999999999999 999999999999 999998875 567777765 589999999995 344544
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.11 E-value=1.1e-07 Score=94.20 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=68.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCchHHHhhcCe
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL--DGR-----IVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~t~hqp~~~i~~~fd~ 104 (437)
+..+|+|| ||+++| +.+|++ |+|||+....++.+.++++++ +|. ||++++|+.+ ..++|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45689999 899999 578876 999999999999999999874 577 8999999976 456999
Q ss_pred EEEEeCCeEEEeeChhHH
Q 013741 105 LLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 105 v~~L~~G~~v~~G~~~~~ 122 (437)
++++.+|+++..|+..+.
T Consensus 236 v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHCSEEEEBCHHHHTT
T ss_pred eEEeeCcEEEEeCCHHHc
Confidence 999999999999887754
No 103
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.09 E-value=1.9e-06 Score=85.62 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc--------hHHHhh
Q 013741 33 RGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS--------SHLFYL 101 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~--------~~i~~~ 101 (437)
..|| |||+.||++++.+|+ +|+|| ||+|||+.... +++.+ .|.|+|+++|... +.....
T Consensus 260 ~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~ 329 (359)
T 2og2_A 260 EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEEL 329 (359)
T ss_dssp HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHh
Confidence 4588 999999999999999 99999 99999987653 45554 5899999999532 123344
Q ss_pred cCeEEEEeCCeE
Q 013741 102 FDDLLLLSNGET 113 (437)
Q Consensus 102 fd~v~~L~~G~~ 113 (437)
.+.|.++..|+.
T Consensus 330 ~~pI~~ig~Ge~ 341 (359)
T 2og2_A 330 GIPVKFIGVGEA 341 (359)
T ss_dssp CCCEEEEECSSS
T ss_pred CCCEEEEeCCCC
Confidence 567777777763
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.03 E-value=2.7e-07 Score=94.36 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=68.3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---c-CC-----EEEEEecCCchHHHhhc
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL---D-GR-----IVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~t~hqp~~~i~~~f 102 (437)
...+|+|| ||++|| +.+|++ |+|||+.....+.+.++++.+ + |. ||++++|+.+ ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 45689999 999999 888887 999999999999999999876 3 64 8999999986 4678
Q ss_pred CeEEEEeCCeEEEeeChhHH
Q 013741 103 DDLLLLSNGETIYFGDAKMA 122 (437)
Q Consensus 103 d~v~~L~~G~~v~~G~~~~~ 122 (437)
|++++|.+|+++..|++.+.
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHT
T ss_pred ceEEEEeCcEEEEeCCHHHc
Confidence 99999999999999887654
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.01 E-value=3.5e-06 Score=80.16 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 41 KRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 41 kRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
-|++|+++|..+|+++++|||| |..+...++ +. +..|.+|++++|.++ ....+||++.|..
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 3899999999999999999999 888866543 33 457899999999965 5788999988853
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.93 E-value=8.5e-06 Score=73.71 Aligned_cols=74 Identities=15% Similarity=0.031 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKR-LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (437)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkR-v~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t 86 (437)
.+.+.++..++.... +++ +...+|+||||| +..+++++.+|.++++|||||++|..+..++.+.|+++..+|.+
T Consensus 128 ~~~~~~~~~~~~~~~---v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVLV---LLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEEE---EEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeEE---EEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 445556666654321 222 234589999999 89999999999999999999999999999999999998776654
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.89 E-value=2.6e-07 Score=90.30 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~ 67 (437)
.+++.+.++.++ .+..+..+ ..+|||||||+++|++++.+|+||++|||+..+|.
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 456778888887 44444444 46999999999999999999999999999999986
No 108
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.89 E-value=6.4e-08 Score=89.56 Aligned_cols=50 Identities=8% Similarity=0.047 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHH-----HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 33 RGISSGEKKRLSI-----SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 33 ~~lSgGerkRv~i-----a~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
..+|||||||+++ +++++.+|++++|||||+++|..+...+.+.|++..+
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3689999999999 8899999999999999999999999999999888654
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=2.7e-05 Score=69.06 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741 47 IEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (437)
Q Consensus 47 ~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~ 97 (437)
...+.+|++|+||||++ ++|......+.+.+.+..++|+++|+|+|.+..+
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 34567999999999995 9999999999999999888899999999998754
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=9e-07 Score=80.11 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=54.3
Q ss_pred cCCCCHHHHHHHH-HHH---HHHhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCEEEE---Ee-cCCchHHHhh
Q 013741 32 LRGISSGEKKRLS-ISI---EILTQPTVLLLDE--PTSGLDSASAFFVIQVLKCIALDGRIVVC---SI-HQPSSHLFYL 101 (437)
Q Consensus 32 ~~~lSgGerkRv~-ia~---~l~~~p~ll~lDE--PtsgLD~~~~~~i~~~l~~l~~~g~tvi~---t~-hqp~~~i~~~ 101 (437)
...+|+|||+++. +.+ ++..+|+++++|| |+..+|.... +.|+++-++..++|+ ++ |+.+ ..+
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~----~~l~~~l~~~~~~ilgti~vsh~~~---~~~ 153 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI----QAVRQTLSTPGTIILGTIPVPKGKP---LAL 153 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH----HHHHHHHHCSSCCEEEECCCCCSSC---CTT
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH----HHHHHHHhCCCcEEEEEeecCCCCc---hHH
Confidence 3469999998884 343 4789999999999 8988888654 444444444555553 32 7653 245
Q ss_pred cCeEEEEeCCeEEEee
Q 013741 102 FDDLLLLSNGETIYFG 117 (437)
Q Consensus 102 fd~v~~L~~G~~v~~G 117 (437)
.|++..+.+|+++...
T Consensus 154 vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 154 VEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHTTCCSEEEECC
T ss_pred HHHHeecCCcEEEEeC
Confidence 6777777888887654
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.77 E-value=6.1e-08 Score=88.61 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------CCHHHHHHHHHH
Q 013741 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEK----KRLSISIEILTQPTVLLLDEPTSG-------LDSASAFFVIQV 76 (437)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGer----kRv~ia~~l~~~p~ll~lDEPtsg-------LD~~~~~~i~~~ 76 (437)
+++.+.++.+++.+..+.+. ..+|+||| ||+++++.++.+|.++++||||++ ||+.....+.+.
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 68 ALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 56777888888776555433 45899964 688999999999999999999999 999999999999
Q ss_pred HHHHH-hcCCEEEEEecCCc
Q 013741 77 LKCIA-LDGRIVVCSIHQPS 95 (437)
Q Consensus 77 l~~l~-~~g~tvi~t~hqp~ 95 (437)
+++.. +.|+|++.++|+..
T Consensus 143 l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 98864 57899988888743
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.74 E-value=1e-05 Score=80.32 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
+|+++|..+|+++++|||| |..+ .+.+.+++..|.+|++|+|.++ .+ ..+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 9999999999999999999 6544 4455556778999999999976 34 789999988654
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=0.00024 Score=65.55 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=50.8
Q ss_pred CCCHHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-cCCEEEEEecCCchH
Q 013741 34 GISSGEKKR-LSISIEIL--TQPTVLLLDEPTSGLDSA-------S-----AFFVIQVLKCIAL-DGRIVVCSIHQPSSH 97 (437)
Q Consensus 34 ~lSgGerkR-v~ia~~l~--~~p~ll~lDEPtsgLD~~-------~-----~~~i~~~l~~l~~-~g~tvi~t~hqp~~~ 97 (437)
..++.+... +.-..+++ .+|+++++|||++.+|+. + ..++++.|+++++ .|.|||++.|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 356665433 33344444 489999999999999975 3 4567777887776 589999999964321
Q ss_pred ------------------HHhhcCeEEEEeCCe
Q 013741 98 ------------------LFYLFDDLLLLSNGE 112 (437)
Q Consensus 98 ------------------i~~~fd~v~~L~~G~ 112 (437)
+.+++|.+++|++|+
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -------------------CCTTCEEEEEEECS
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 223789999998653
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.40 E-value=7.5e-06 Score=79.46 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=45.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALD-GRIVVCSIHQPS 95 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~ 95 (437)
+.+++|||||||+.+|++++ ++++||||+ |||+... +.+++++++ +.++|++.|+..
T Consensus 110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 44679999999988877764 999999998 5999873 566666653 678888899854
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=0.00012 Score=63.30 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE-EEEEecCCchHH
Q 013741 48 EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI-VVCSIHQPSSHL 98 (437)
Q Consensus 48 ~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t-vi~t~hqp~~~i 98 (437)
+++.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+..++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 3467899999999998 5555588899999998888887 899999765443
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.29 E-value=1.4e-06 Score=78.15 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC-CchHHHhhcCeEEEE
Q 013741 36 SSGEKKRLSISI------EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ-PSSHLFYLFDDLLLL 108 (437)
Q Consensus 36 SgGerkRv~ia~------~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq-p~~~i~~~fd~v~~L 108 (437)
|+|+++++.++. ++..+|+...+|+ |+|+..... .+.++.+.+.+.++|.++|. +. ++.+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--
Confidence 888888888888 8999999888884 899988888 88888886677899999998 64 6889999998
Q ss_pred eCCeEEEeeChhHH
Q 013741 109 SNGETIYFGDAKMA 122 (437)
Q Consensus 109 ~~G~~v~~G~~~~~ 122 (437)
++|+++..|+++-+
T Consensus 169 ~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 169 TNPRFIFCMAGDPL 182 (189)
T ss_dssp HCGGGSCC------
T ss_pred hCCcEEEeecCCch
Confidence 99999999987643
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.22 E-value=2.8e-05 Score=72.75 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=50.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeC
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSN 110 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~-~fd~v~~L~~ 110 (437)
+..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+|++++|... .+.+ +.+++ .+
T Consensus 114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~ 178 (245)
T 2jeo_A 114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RR 178 (245)
T ss_dssp ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C-
T ss_pred cccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---Hc
Confidence 35799999999987 5778899999999998888753 2222 3789999999743 3433 33434 66
Q ss_pred CeEEEeeChhHHHHHH
Q 013741 111 GETIYFGDAKMAVKFF 126 (437)
Q Consensus 111 G~~v~~G~~~~~~~~f 126 (437)
|+ +.+++.+.+
T Consensus 179 G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 179 GR-----DLEQILTQY 189 (245)
T ss_dssp -------CHHHHHHHH
T ss_pred CC-----CHHHHHHHH
Confidence 65 566665544
No 118
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.07 E-value=0.0011 Score=66.60 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHHHHH--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-cCCEEEEEecCCc---------
Q 013741 40 KKRLSISIEIL--TQPTVLLLDEPTSGLDSASA------------FFVIQVLKCIAL-DGRIVVCSIHQPS--------- 95 (437)
Q Consensus 40 rkRv~ia~~l~--~~p~ll~lDEPtsgLD~~~~------------~~i~~~l~~l~~-~g~tvi~t~hqp~--------- 95 (437)
++.+.-+.+++ .+|+++++|||++.+|+... .++++.|+++++ .|.|||+++|.-.
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 33444444443 46999999999999996433 678889999987 5999999999811
Q ss_pred ---------hHHHhhcCeEEEEeCCe
Q 013741 96 ---------SHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 96 ---------~~i~~~fd~v~~L~~G~ 112 (437)
..+.+.+|.++.|.+|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 23567789999998764
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.05 E-value=0.0024 Score=65.28 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHHh-cCCEEEEEec---------
Q 013741 33 RGISSGEKKRLSISIEIL--TQPTVLLLDEPTSGLDS--------ASAFFVIQVLKCIAL-DGRIVVCSIH--------- 92 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~--~~p~ll~lDEPtsgLD~--------~~~~~i~~~l~~l~~-~g~tvi~t~h--------- 92 (437)
.++|++|.+ +.++.++ .+|+++++|+++...+. ....++.+.||.+++ .|.+||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 368999877 5566666 68999999999987742 344678888999987 5889999998
Q ss_pred C--Cc-------hHHHhhcCeEEEEeCCeE
Q 013741 93 Q--PS-------SHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 93 q--p~-------~~i~~~fd~v~~L~~G~~ 113 (437)
. |. ..+.+.+|.|++|++++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 43 157788999999987763
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00083 Score=65.70 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 49 ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 49 l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
+..+|+++++|||++ ||..++..+.+.+++.. .+.++|+++|+|..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 577999999999999 99999999999998854 46789999999864
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.47 E-value=0.0012 Score=65.80 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741 42 RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 42 Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~ 109 (437)
+.+|+.+|..+|+++++|||+ |..+... .++. +..|.++++|+|..+ +.+.+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 579999999999999999999 7665443 3443 456889999999954 678889887764
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.41 E-value=0.00029 Score=69.89 Aligned_cols=74 Identities=15% Similarity=-0.145 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHH-hCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhc
Q 013741 34 GISSGEKKRLSISIEIL-TQPTVLLLDE---PT------SGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~-~~p~ll~lDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~f 102 (437)
.+|+|+++|..++..+. .+|++++||| |+ .++|...+..+.+.|+++.+ .|.++++.+|. + +..+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHH
Confidence 46777788888877764 5999999999 65 68999999999999999865 47888888864 3 456666
Q ss_pred CeEEEEe
Q 013741 103 DDLLLLS 109 (437)
Q Consensus 103 d~v~~L~ 109 (437)
|++.+++
T Consensus 336 ~~i~~i~ 342 (365)
T 1lw7_A 336 QVKAVIE 342 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 123
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.39 E-value=0.0014 Score=69.57 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=55.5
Q ss_pred HhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCCc------hHHHhhc-----CeEEEEeC
Q 013741 50 LTQPTVLLLDEP------TSGLDSASAFFVIQVLKCIAL--DGRIVVCSIHQPS------SHLFYLF-----DDLLLLSN 110 (437)
Q Consensus 50 ~~~p~ll~lDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tvi~t~hqp~------~~i~~~f-----d~v~~L~~ 110 (437)
..+|+++++||| |+|||+....++.+.++++.+ .+.++++++|... ..+.+.. ..+.++.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 346999999999 999999999999999999754 3567788888754 1223333 34788899
Q ss_pred CeEEEeeChhHHHH
Q 013741 111 GETIYFGDAKMAVK 124 (437)
Q Consensus 111 G~~v~~G~~~~~~~ 124 (437)
+..+..|+.+++.+
T Consensus 224 ~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 224 PDLVDKGTEDKVVD 237 (608)
T ss_dssp GGGSSSSSTTCCCC
T ss_pred hhhcCcccHHHHHH
Confidence 98888887654443
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.012 Score=54.03 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=45.9
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCchH-------HHhhcCeEEEEeC
Q 013741 51 TQPTVLLLDEPTSGL--DSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSH-------LFYLFDDLLLLSN 110 (437)
Q Consensus 51 ~~p~ll~lDEPtsgL--D~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~-------i~~~fd~v~~L~~ 110 (437)
.+|+++++|+|++.+ |.....+.+..|+++++ .|.||++++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 65556667777777664 689999999986532 5677899999974
No 125
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.24 E-value=0.00063 Score=68.87 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 35 ISSGEKKRLSISIEILTQPT---VLLLDEPT-SGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~---ll~lDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
++.++++|+.|+++++.+|+ ++++|||| .|||+... +.++.+.. +.++|+++|.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 46677888999999999999 99999999 69998873 44555554 6777777776
No 126
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.01 E-value=0.002 Score=62.28 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS 95 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~ 95 (437)
++..+|||+.||++++.+|+.++| +||+.+..++++.++++.+ .|.|+|+++|.+.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 456669999999999999994444 4555555567777777776 4899999999853
No 127
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.99 E-value=0.021 Score=56.26 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH---H-hcCCEEEEEecCCch-----
Q 013741 41 KRLSISIEILTQ--PTVLLLDEPTSGL----------DS---ASAFFVIQVLKCI---A-LDGRIVVCSIHQPSS----- 96 (437)
Q Consensus 41 kRv~ia~~l~~~--p~ll~lDEPtsgL----------D~---~~~~~i~~~l~~l---~-~~g~tvi~t~hqp~~----- 96 (437)
+-+.++.+++.+ |+++++|||++.+ |+ ..+..+.+.++++ + +.|.+||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677778765 9999999999998 33 2223444455554 3 468999999886431
Q ss_pred ----------HHHhhcCeEEEEeCCeEEEeeC
Q 013741 97 ----------HLFYLFDDLLLLSNGETIYFGD 118 (437)
Q Consensus 97 ----------~i~~~fd~v~~L~~G~~v~~G~ 118 (437)
.+.+.+|.++.+.+++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567899999998887765554
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0005 Score=66.18 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=31.5
Q ss_pred ccCCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 013741 31 HLRGISSGEKKRLSIS--IEILTQPTVLLLDEPTSGLDSAS 69 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia--~~l~~~p~ll~lDEPtsgLD~~~ 69 (437)
+.+.+||||++|+.+| +++ +|+|+|+|||++|+|+..
T Consensus 131 y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 131 YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 3467999999999987 444 999999999999999753
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.82 E-value=0.00038 Score=61.68 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=47.2
Q ss_pred HHHHHHHH-cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE-------EEeCCCCC---CCHHHHHHHHHHH
Q 013741 9 IVEETIIK-MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVL-------LLDEPTSG---LDSASAFFVIQVL 77 (437)
Q Consensus 9 ~v~~~l~~-l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll-------~lDEPtsg---LD~~~~~~i~~~l 77 (437)
.+++.++. +. -.|+.++. ++|||||||++|||+++.+|++. .-|.|..+ +|......+.+.+
T Consensus 84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i 156 (171)
T 2f1r_A 84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI 156 (171)
T ss_dssp CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence 45556665 43 35788875 69999999999999999999873 22444322 3445567777777
Q ss_pred HHHHhcC
Q 013741 78 KCIALDG 84 (437)
Q Consensus 78 ~~l~~~g 84 (437)
.+...+|
T Consensus 157 ~~~~~~~ 163 (171)
T 2f1r_A 157 LSLLREG 163 (171)
T ss_dssp HHHHTC-
T ss_pred HHHHhcc
Confidence 6666654
No 130
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.81 E-value=0.00089 Score=65.17 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd 103 (437)
.+|+|||||+..++.++.+|+++ ||| .++.+.++++. .+.+|++++|.+. +.-.++|
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 58999999998888888888877 888 67888888875 5789999999864 3334443
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.80 E-value=0.0002 Score=66.84 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=38.8
Q ss_pred cCCCCHHHHHHHHHHHHH-HhCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 32 LRGISSGEKKRLSISIEI-LTQPTVLLLD----EPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l-~~~p~ll~lD----EPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
+..+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+++
T Consensus 150 ~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 150 IHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp EETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 345777 54 566 8999999999 9999999999999999999987653
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.70 E-value=0.0026 Score=64.33 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=51.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeE
Q 013741 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRIVVCSIHQPSSHLFYLFDDL 105 (437)
Q Consensus 31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~hqp~~~i~~~fd~v 105 (437)
....+|+|+++|+.++++|+.+|.++++ +++|...+ ..++.+++.. +.|.+++.++..-...+.++++.+
T Consensus 249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3456999999999999999999999999 99999877 5555555544 457666655544345566666654
No 133
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.23 E-value=0.028 Score=57.71 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCCc
Q 013741 37 SGEKKRLSISIEILTQPTVLLLDEP----------TSGLDSASAFFVIQVLKCIA----LDGRIVVCSIHQPS 95 (437)
Q Consensus 37 gGerkRv~ia~~l~~~p~ll~lDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~t~hqp~ 95 (437)
|+++.|-.+..+....|.+||+||+ +.|.|......+.++|+.+- ..+..||.++|.|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 34677666666666776663 35678999999974
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.16 E-value=0.0095 Score=64.95 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=61.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEE-ecCCchHHHhhcCeEEEEe
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCS-IHQPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~t-~hqp~~~i~~~fd~v~~L~ 109 (437)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.+++++| +|++ ..+.+.+++.-++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi~ 266 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLLA 266 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCccc
Confidence 34579999999999999999999999999996 999888777777776655566788885 7754 56777887544443
Q ss_pred -CCe
Q 013741 110 -NGE 112 (437)
Q Consensus 110 -~G~ 112 (437)
.|+
T Consensus 267 v~gr 270 (773)
T 2xau_A 267 VPGR 270 (773)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 443
No 135
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.88 E-value=0.0026 Score=65.80 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-EEEEeCCCCCCCHHHHHHH
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRL----------SISIEILTQPT-VLLLDEPTSGLDSASAFFV 73 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv----------~ia~~l~~~p~-ll~lDEPtsgLD~~~~~~i 73 (437)
|.++| .+.++..|+.+..+-. ......+|+||++|. .++..+...|. ++++||++.-+|.. ...+
T Consensus 242 EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~ 317 (512)
T 2ius_A 242 EMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKV 317 (512)
T ss_dssp HHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHH
T ss_pred HHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHH
Confidence 44444 3677888876554321 001124688887652 24445567887 78999999988843 3456
Q ss_pred HHHHHHHHhc----CCEEEEEecCCch
Q 013741 74 IQVLKCIALD----GRIVVCSIHQPSS 96 (437)
Q Consensus 74 ~~~l~~l~~~----g~tvi~t~hqp~~ 96 (437)
.+.+.++++. |.++|+++|.|+.
T Consensus 318 ~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 318 EELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred HHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 6666666553 6699999999983
No 136
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.37 E-value=0.063 Score=52.52 Aligned_cols=77 Identities=9% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
|+.++...|.......+++.+..+ | .||.+|.+|+..|...+.++++++.|+|... ..++...++++
T Consensus 84 ms~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l 150 (338)
T 4a1f_A 84 MSAEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKL 150 (338)
T ss_dssp SCHHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHH
Confidence 345555555555555555554433 2 5999999999999999999999999998654 34666777777
Q ss_pred Hhc--CCEEEEE
Q 013741 81 ALD--GRIVVCS 90 (437)
Q Consensus 81 ~~~--g~tvi~t 90 (437)
.++ |..+|++
T Consensus 151 ~~~~gg~~lIVI 162 (338)
T 4a1f_A 151 KSQHKELGIAFI 162 (338)
T ss_dssp HHHCTTEEEEEE
T ss_pred HHhcCCCCEEEE
Confidence 663 5666665
No 137
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.61 E-value=0.1 Score=47.59 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHH
Q 013741 46 SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF 125 (437)
Q Consensus 46 a~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~ 125 (437)
..+++..+++++|| ||+.++.++.+.+. ++.+|++++|++. ++.+ |+ +.+| .++++++...
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHH
Confidence 45667789999999 99999999999876 5899999999964 3433 43 6677 4777777665
Q ss_pred HH
Q 013741 126 FA 127 (437)
Q Consensus 126 f~ 127 (437)
+.
T Consensus 162 l~ 163 (219)
T 1s96_A 162 MA 163 (219)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 138
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.48 E-value=0.31 Score=46.91 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------------CCC--------------------H-HHHHHHHHHH
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTS----------------GLD--------------------S-ASAFFVIQVL 77 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPts----------------gLD--------------------~-~~~~~i~~~l 77 (437)
||++|++|+..|...+.++.+++.|+|.. |.+ . ....++.+.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 77788888777776666656666555532 111 1 2234566777
Q ss_pred HHHHh-cCCEEEEEecCCc------------------hHHHhhcCeEEEEe
Q 013741 78 KCIAL-DGRIVVCSIHQPS------------------SHLFYLFDDLLLLS 109 (437)
Q Consensus 78 ~~l~~-~g~tvi~t~hqp~------------------~~i~~~fd~v~~L~ 109 (437)
+.+++ .|.+|+++.|... ..+.+.+|-|++|.
T Consensus 214 k~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~ 264 (315)
T 3bh0_A 214 KKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY 264 (315)
T ss_dssp HHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred HHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence 88877 4778888877431 23667788888876
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.34 E-value=0.0003 Score=70.63 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=57.9
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCCchHHHhhcCeEE-EEeCC-eEEEeeChhH
Q 013741 52 QP--TVLLLDEPTSGLDSASAFFVIQVLKCI-ALDGRIVVCSIHQPSSHLFYLFDDLL-LLSNG-ETIYFGDAKM 121 (437)
Q Consensus 52 ~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~t~hqp~~~i~~~fd~v~-~L~~G-~~v~~G~~~~ 121 (437)
+| +++++|||+.++|.....+..+.++++ ++.|.|++ +|.. .++.++||++. +|.+| +.++.|+.++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 78 999999999999999999999999998 77777764 8885 57899999999 99999 9988887543
No 140
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.91 E-value=0.019 Score=58.29 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE-EeCCeEEEeeChh
Q 013741 52 QPTVLLLDEPTSGLDS-ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL-LSNGETIYFGDAK 120 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~-L~~G~~v~~G~~~ 120 (437)
+|++|++||+..-.+. .+...+.+.+..+.+.|..+|+++|.|..++..+.+++.- +..|.++..++++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999877664 6777888999988888899999999876543333333332 4567777777664
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.36 E-value=0.015 Score=51.15 Aligned_cols=53 Identities=11% Similarity=-0.126 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h 92 (437)
+..+|+|++||+.++|++.++|+++ +|+.....+.+.++.+...+..+|.+.+
T Consensus 107 ~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 107 LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTT
T ss_pred eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCC
Confidence 3469999999999999999999876 6887777777777665443334444443
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.29 E-value=0.17 Score=51.84 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=49.9
Q ss_pred cCCCCHHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 013741 32 LRGISSGEKKRLSISI--EILT---------------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~--~l~~---------------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp 94 (437)
.++.||||+|-.-+++ +++. .-.++++||. +-+|...+...++.++++ |.-+|+++ |
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat--P 450 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA--P 450 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE--S
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC--c
Confidence 4679999999644333 3222 1247999999 999999999999999975 55555554 4
Q ss_pred chHHHhhcCeEEEEe
Q 013741 95 SSHLFYLFDDLLLLS 109 (437)
Q Consensus 95 ~~~i~~~fd~v~~L~ 109 (437)
. .+....|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 3 4555567777664
No 143
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.55 E-value=0.15 Score=45.80 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHHH--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 40 KKRLSISIEIL--TQPTVLLLDEPTSG--LDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 40 rkRv~ia~~l~--~~p~ll~lDEPtsg--LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
++.+..++..+ .+.++++|||.+.. ++-....++.+.|.+ +.++..||+|...|..++.+++|-|--|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44566677778 56799999999762 333445567777764 23678999999999999999999998886533
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.47 E-value=0.2 Score=48.18 Aligned_cols=60 Identities=7% Similarity=0.123 Sum_probs=42.6
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRL---SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv---~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
.+.+.+..|+.. ....|||+.+++ ++++++..+|+++++|||.. ......+++.|+++.+
T Consensus 151 L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 151 LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 344556666542 124689999999 89999999999999999974 3445566666666543
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.47 E-value=0.37 Score=45.99 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 013741 36 SSGEKKRLSISIEILTQPTVLLLDEP-TSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 36 SgGerkRv~ia~~l~~~p~ll~lDEP-tsgLD~~~~~~i~~~l~~l~ 81 (437)
...+.+|..++.+...+++++++||| +.|+|.....++.+..+.+.
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 44566788898888899999999999 99999888888877776653
No 146
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.90 E-value=0.13 Score=49.19 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCEEEE-EecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741 44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA---LDGRIVVC-SIHQPSSHLFYLFDDLLLLSNGETIYF 116 (437)
Q Consensus 44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~---~~g~tvi~-t~hqp~~~i~~~fd~v~~L~~G~~v~~ 116 (437)
..+.+.+.+|+++++| |+|+|+.....+.++.+-+. ..+.++++ ++|.. .++.+.+|++..+..|.++..
T Consensus 174 ~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 174 QQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 3344456999999999 99999877655544443332 23345555 46764 567777887766666777763
No 147
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.60 E-value=0.072 Score=52.52 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 36 SgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
+++...|..|+.++..+|+.+++||++. .+..+.|+.+.....|++.++|..+ ....+||+..+.+|.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 4677889999999999999999999985 3455677777665668899999964 677889999887664
No 148
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.24 E-value=0.2 Score=49.26 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---Hh--CCCEEEEeCCC
Q 013741 34 GISSGEKKRLSISIEI---LT--QPTVLLLDEPT 62 (437)
Q Consensus 34 ~lSgGerkRv~ia~~l---~~--~p~ll~lDEPt 62 (437)
.+|+||++|..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
No 149
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.33 E-value=0.53 Score=45.98 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe--cCC
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSI--HQP 94 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~--hqp 94 (437)
..+|+||++++. +.....++-++++| +|+.|+|......+.+.+++... +.++|++. |+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 357899988876 55555677788999 99999999998888887776554 66777666 553
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.34 E-value=1.4 Score=41.31 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCEEEEEecCCc---hHH
Q 013741 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA----------SAFFVIQVLKCIAL----DGRIVVCSIHQPS---SHL 98 (437)
Q Consensus 36 SgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~t~hqp~---~~i 98 (437)
+++++.|..++.+...+|.++++||+.+-++.. ....++..+..... .+..+|.+++.|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467778888888888899999999998776532 22234444443321 2346777888753 334
Q ss_pred HhhcCeEEEE
Q 013741 99 FYLFDDLLLL 108 (437)
Q Consensus 99 ~~~fd~v~~L 108 (437)
.+-||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556655443
No 151
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.27 E-value=1.7 Score=39.64 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h---------qp~~~i~~~fd~v~~L~ 109 (437)
+|+++++||--. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 466677777878999999999 67788999999999875
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.94 E-value=0.016 Score=51.94 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=39.6
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 48 EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 48 ~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.+|++++|||+|+++|..+...+.+.|++..++ +...|.+ ..+|.++++++
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 566677777888889999999999999998887654 1223522 46899877753
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.98 E-value=0.33 Score=42.52 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 40 KKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 40 rkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
.++..+|++++.+|+++++| ||++|..+..++.+.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999998865
No 154
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.74 E-value=7.4 Score=38.94 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=41.6
Q ss_pred hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh-cCCEEEEEecCCc------------------hHHHhh
Q 013741 51 TQPTVLLLDEPTSGLDS----------ASAFFVIQVLKCIAL-DGRIVVCSIHQPS------------------SHLFYL 101 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~----------~~~~~i~~~l~~l~~-~g~tvi~t~hqp~------------------~~i~~~ 101 (437)
.+|+++++|..+.=.+. ....++.+.||.+++ .+.+||++.|-.. ..+.+.
T Consensus 309 ~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~ 388 (444)
T 2q6t_A 309 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQD 388 (444)
T ss_dssp SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGG
T ss_pred cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHh
Confidence 47999999998653322 123577888999988 5888888887321 135667
Q ss_pred cCeEEEEeC
Q 013741 102 FDDLLLLSN 110 (437)
Q Consensus 102 fd~v~~L~~ 110 (437)
+|.|++|..
T Consensus 389 aD~vi~L~r 397 (444)
T 2q6t_A 389 ADLVMFIYR 397 (444)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEec
Confidence 888888863
No 155
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=79.94 E-value=0.36 Score=47.51 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEI 49 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l 49 (437)
++++..++++++++.+|+.+..|... .++| ||+||++||.++
T Consensus 287 ~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 287 EPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp CHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 34566677889999999987777655 4699 999999999754
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.64 E-value=0.0021 Score=60.73 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=48.1
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHhcCCEEEEEe
Q 013741 22 CAETKIGNWHLRGISSGEKKRLSISIEILTQPTV--LLLDEPTSGLDSASA--------FFVIQVLKCIALDGRIVVCSI 91 (437)
Q Consensus 22 ~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~l--l~lDEPtsgLD~~~~--------~~i~~~l~~l~~~g~tvi~t~ 91 (437)
..++.++....+ .|+| ||+.|++.++.+|++ +++||.|+.+|.... ..+.+...++..+|+|.+...
T Consensus 161 ~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a 237 (261)
T 2eyu_A 161 ILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDA 237 (261)
T ss_dssp HEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHH
T ss_pred HhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHH
Confidence 444555543333 5788 889999999999999 999999999998642 234444444555678776555
Q ss_pred cC
Q 013741 92 HQ 93 (437)
Q Consensus 92 hq 93 (437)
|.
T Consensus 238 ~r 239 (261)
T 2eyu_A 238 ME 239 (261)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 157
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=76.76 E-value=2.4 Score=42.52 Aligned_cols=57 Identities=5% Similarity=0.024 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEec
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC-IALDGRIVVCSIH 92 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~t~h 92 (437)
.+++-.+ +.|+..|..++.++++|||+..|.+.....+.+.+++ +...|..|+.++.
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 3577666 7889999899999999999999999999999998886 8778888776653
No 158
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=75.91 E-value=1.9 Score=37.84 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=31.3
Q ss_pred HHHhCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741 48 EILTQPTVLLLDEPTS-GLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 48 ~l~~~p~ll~lDEPts-gLD~~~~~~i~-~~l~~l~~~g~tvi~t~hqp~~~i~~~ 101 (437)
..+.++++|++||+-. .++......+. ..+.....++..+|+|++.+..++...
T Consensus 111 ~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 111 DYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred HHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 3346789999999932 23332233344 355554455667777777766666554
No 159
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.51 E-value=4.3 Score=39.14 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=35.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCCc
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL---DGRIVVCSIHQPS 95 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~t~hqp~ 95 (437)
.+|.++++||+..- |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5778999999874
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.28 E-value=0.031 Score=50.28 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 33 RGISSGEKKRLSIS-IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 33 ~~lSgGerkRv~ia-~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
.+.|+||+||++++ ..++.++.++++|||.. +++.+.--.++...+.....+.++..|. +..|
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g 173 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHG 173 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcC
Confidence 35799999999987 77777887777888741 1112222345555555443356666662 3445
Q ss_pred eEEEeeChhHHHHHH
Q 013741 112 ETIYFGDAKMAVKFF 126 (437)
Q Consensus 112 ~~v~~G~~~~~~~~f 126 (437)
+ +.+++.+.+
T Consensus 174 ~-----t~~~~~~~~ 183 (208)
T 3c8u_A 174 L-----NHDAAVARA 183 (208)
T ss_dssp C-----CHHHHHHHH
T ss_pred C-----CHHHHHHHH
Confidence 4 566666544
No 161
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.18 E-value=3.7 Score=39.27 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=37.6
Q ss_pred HHHHHHHHHH---hCCCEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHh-cCCEEEEEecC
Q 013741 41 KRLSISIEIL---TQPTVLLLDEPTSGLDS--------A----SAFFVIQVLKCIAL-DGRIVVCSIHQ 93 (437)
Q Consensus 41 kRv~ia~~l~---~~p~ll~lDEPtsgLD~--------~----~~~~i~~~l~~l~~-~g~tvi~t~hq 93 (437)
+.+..+..++ .+|+++++|+.++-.+. . ...++++.|+++++ .+.+||++.|-
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 5677777777 57999999999975432 1 13566677777776 57888887664
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=73.51 E-value=2.3 Score=40.40 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=35.3
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 50 LTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 50 ~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
..+|++|++||+-. ..|......+...+..+.+.|..+|++++.|..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 46799999999865 234467778888888887777777777776544
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=72.71 E-value=2.1 Score=41.97 Aligned_cols=71 Identities=17% Similarity=0.092 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHH----HHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSIS----IEI-LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia----~~l-~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
.+.+.++++.+++.+..--.|+|. ..-+|+|+++|+.++ .++ ..+|++ +|+|++|..+...+.+.|.++.
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 345677888888765543333442 334788888888877 444 333443 8999999999999999998865
Q ss_pred h
Q 013741 82 L 82 (437)
Q Consensus 82 ~ 82 (437)
.
T Consensus 353 ~ 353 (364)
T 2qtf_A 353 T 353 (364)
T ss_dssp H
T ss_pred c
Confidence 4
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.62 E-value=15 Score=35.64 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=45.0
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHH---HHHHh-cCCEEEEEecCCch------
Q 013741 42 RLSISIEIL--TQPTVLLLDEPTSGLDSA-------------SAFFVIQVL---KCIAL-DGRIVVCSIHQPSS------ 96 (437)
Q Consensus 42 Rv~ia~~l~--~~p~ll~lDEPtsgLD~~-------------~~~~i~~~l---~~l~~-~g~tvi~t~hqp~~------ 96 (437)
-+.++..++ .+++++++|+++.=.... .+..+.+.+ +.+++ .+.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345555564 579999999999866311 112333444 44444 58888887764221
Q ss_pred ---------HHHhhcCeEEEEeCCeEEEee
Q 013741 97 ---------HLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 97 ---------~i~~~fd~v~~L~~G~~v~~G 117 (437)
.+.+.+|-++.+.+.++...|
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 355677878888766654443
No 165
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=71.98 E-value=6.2 Score=36.14 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC---------CchHHHhhcCeEEEEe
Q 013741 49 ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ---------PSSHLFYLFDDLLLLS 109 (437)
Q Consensus 49 l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq---------p~~~i~~~fd~v~~L~ 109 (437)
.+.+.+++++||----.| +.+.++.+++.|..||++-+. ++.++..++|.|.-|.
T Consensus 87 ~~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HHTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred HhccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 347789999999876543 666666677789999999999 9999999999998875
No 166
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.43 E-value=4.1 Score=37.20 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741 45 ISIEILTQPTVLLLDEPTSG-LDSASAFFVIQVLKCIALDGRIVVCSIH 92 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsg-LD~~~~~~i~~~l~~l~~~g~tvi~t~h 92 (437)
+...+..+|+++++||+-.- .+........+.+..+-..|..++.|+|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33335579999999997632 3322222233333334557888888887
No 167
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.89 E-value=15 Score=36.82 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=38.9
Q ss_pred CCC--EEEEeCCCC----C--CC-HHHHHHHHHHHHHHHh-cCCEEEEEecCCc------------------hHHHhhcC
Q 013741 52 QPT--VLLLDEPTS----G--LD-SASAFFVIQVLKCIAL-DGRIVVCSIHQPS------------------SHLFYLFD 103 (437)
Q Consensus 52 ~p~--ll~lDEPts----g--LD-~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~------------------~~i~~~fd 103 (437)
+|+ ++++|--.. + -+ ......+.+.||.+++ .|.+||++.|-.+ ..+.+.+|
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD 387 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDAD 387 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCS
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCC
Confidence 688 888885432 1 11 1233467788888887 5888888888432 13677788
Q ss_pred eEEEEeC
Q 013741 104 DLLLLSN 110 (437)
Q Consensus 104 ~v~~L~~ 110 (437)
-|+.|..
T Consensus 388 ~Vi~L~r 394 (444)
T 3bgw_A 388 IIEFLYR 394 (444)
T ss_dssp EEEECCB
T ss_pred EEEEEec
Confidence 8888863
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.71 E-value=0.29 Score=47.40 Aligned_cols=35 Identities=23% Similarity=0.101 Sum_probs=29.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+..||+|+|+|+.++ .+||+.+..++.+.|++.++
T Consensus 160 ~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 160 SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH
Confidence 346999999998654 78888889999999999876
No 169
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=68.04 E-value=9 Score=33.73 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h---------qp~~~i~~~fd~v~~L~ 109 (437)
+.+++++||--- +|+ +.++.++++++.|..||++-+ .++.++..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~----~~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDD----EIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCH----HHHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 553 236678888888999999998 67788999999997765
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=67.67 E-value=3.4 Score=35.92 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741 42 RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (437)
Q Consensus 42 Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~ 81 (437)
....|++++.+|++.++| ||++|.....++.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999 99999999999998887654
No 171
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.57 E-value=6.6 Score=37.88 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=36.7
Q ss_pred HHHHHHHHHH----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHh-cCCEEEEEecC
Q 013741 41 KRLSISIEIL----TQPTVLLLDEPTSGLDSA------------SAFFVIQVLKCIAL-DGRIVVCSIHQ 93 (437)
Q Consensus 41 kRv~ia~~l~----~~p~ll~lDEPtsgLD~~------------~~~~i~~~l~~l~~-~g~tvi~t~hq 93 (437)
+.+..+..++ .+++++++|+.++-.+.. ...++++.|+++++ .+.+||++.|-
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 4455555666 568999999999865432 13566677778776 57788877765
No 172
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=67.18 E-value=5.2 Score=36.14 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS 109 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h---------qp~~~i~~~fd~v~~L~ 109 (437)
+.+++++||--- +|.. .++.++++++.|..||++-+ .++.++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 5532 34778888888999999999 78889999999998875
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.96 E-value=1.4 Score=46.31 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
.++|+|++|++..|.....++.+||+||... |++.....+.+.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999998 898888877777764
No 174
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=65.75 E-value=2.4 Score=40.99 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 33 RGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+.+|+|+++++..+.+++. +|++++ ||++|.....++.+.|.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 3578999999999998887 688876 999999999999999988654
No 175
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.65 E-value=0.011 Score=58.63 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 35 ISSGEKKRLSISIEILTQPTV--LLLDEPTSGLDSAS---A-----FFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~l--l~lDEPtsgLD~~~---~-----~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
.|+| ||++|++.+..+|++ +++||.|+.||... . ..+.+...++..+|+|.+...|..+.
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 4778 789999999999999 99999999999652 1 23444444555678888888777653
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.94 E-value=42 Score=32.53 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=48.3
Q ss_pred HHHHHHHHHH--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHh-cCCEEEEEecCC-------
Q 013741 41 KRLSISIEIL--TQPTVLLLDEPTSGLD----------------SASAFFVIQVLKCIAL-DGRIVVCSIHQP------- 94 (437)
Q Consensus 41 kRv~ia~~l~--~~p~ll~lDEPtsgLD----------------~~~~~~i~~~l~~l~~-~g~tvi~t~hqp------- 94 (437)
+-+.++..++ .+|+++++|+-++=.. .....++++.|+++++ .+.+||++-|--
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3456666665 4699999998665443 1222345566777776 477888876651
Q ss_pred --------chHHHhhcCeEEEEeCCeEEEee
Q 013741 95 --------SSHLFYLFDDLLLLSNGETIYFG 117 (437)
Q Consensus 95 --------~~~i~~~fd~v~~L~~G~~v~~G 117 (437)
...+.+..|-++.+.++..+..|
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g 236 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRGEPIKEG 236 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred CCcccCCCcchhhhhCcEEEEEEeccccccC
Confidence 11245778999999864444443
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=62.90 E-value=5.5 Score=37.87 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=31.9
Q ss_pred HHhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 49 ILTQPTVLLLDEPT-SGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 49 l~~~p~ll~lDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
.+.++++|++||.- ..++...+..+.. ++.....++..+|+|++.|..++...+
T Consensus 211 ~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 211 AVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 35688999999983 2344433444544 555543456778888888776666543
No 178
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=58.97 E-value=0.014 Score=60.53 Aligned_cols=57 Identities=7% Similarity=0.038 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--EecCCchHHHhhc
Q 013741 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC--SIHQPSSHLFYLF 102 (437)
Q Consensus 33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--t~hqp~~~i~~~f 102 (437)
+.+|||||||+.++. + | |+|||+.+...+.+.+.++.++|+|+++ ++|... ++...+
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 357999998876641 2 7 9999988777777777777666788875 777753 455544
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=58.74 E-value=22 Score=34.19 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHHh------cCCEEEEEecCC
Q 013741 42 RLSISIEILTQPTVLLLDEP-------TSGLDSASAFFVIQVLKCIAL------DGRIVVCSIHQP 94 (437)
Q Consensus 42 Rv~ia~~l~~~p~ll~lDEP-------tsgLD~~~~~~i~~~l~~l~~------~g~tvi~t~hqp 94 (437)
|-.+..+-..+|.+||+||. ..+.+......+.+.+..+.. .+..+|++++.|
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 34445555578999999998 344443343334444444431 234567788775
No 180
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=56.55 E-value=6.9 Score=35.93 Aligned_cols=47 Identities=11% Similarity=-0.005 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 013741 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT 54 (437)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ 54 (437)
|.....++++++-+.+|. +..+. ..+++|||+.+++..|++|+..|+
T Consensus 47 s~~~~s~~i~~le~~lg~-~L~~R-----~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 47 SYKSAWDAINEMNQLSEH-ILVER-----ATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp CHHHHHHHHHHHHHHHTS-CCEEE-----CCCC-----EEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC-CeEEe-----cCCCCCCCceEECHHHHHHHHHHH
Confidence 344455678888888887 44443 345899999999999999998886
No 181
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=53.53 E-value=16 Score=35.56 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 52 QPTVLLLDEPTSGLD---SASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
.|.++++||-=.=++ +..+..+.+.+|+.++.|..+++++|.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999877774 667778888999988889999999999864
No 182
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=53.34 E-value=1.2 Score=43.20 Aligned_cols=44 Identities=7% Similarity=-0.066 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCC
Q 013741 44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQP 94 (437)
Q Consensus 44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp 94 (437)
.+++++..++.++.||.+| | .++++.++.+.+ .+.|+|+.+|-+
T Consensus 235 ~i~ral~~de~llvLDa~t-~------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 235 KIARVTKPNLVIFVGDALA-G------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHCCSEEEEEEEGGG-T------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHhcCCCCEEEEecHH-H------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 3677777666666777444 3 466677777775 588999999975
No 183
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=52.35 E-value=18 Score=32.30 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741 36 SSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 36 SgGerkRv~ia~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~ 104 (437)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-+++++|..-|...+.+.|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 445544442 33578899999999966 78877776566555554444457777766666556666654
No 184
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.62 E-value=2.8 Score=40.28 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCEEEEEecCCc
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCI---ALDGRIVVCSIHQPS 95 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l---~~~g~tvi~t~hqp~ 95 (437)
.|.++++||+..-.|......+...++.+ ...+.++|+++|++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 38899999998765321122233333333 233568889999864
No 185
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=51.46 E-value=16 Score=34.27 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHHHHHhCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741 45 ISIEILTQPTVLLLDEPTS-------------GLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS 95 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPts-------------gLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~ 95 (437)
+..+.-..|.++++||.-+ +.......++++.+..+.. .+..||++++.|.
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 3444456799999999642 2222333445554443333 3567888898873
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.82 E-value=12 Score=32.94 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCE-EEEEecCCc
Q 013741 51 TQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRI-VVCSIHQPS 95 (437)
Q Consensus 51 ~~p~ll~lDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~t~hqp~ 95 (437)
.+|+++++||.-.-- +......+.+.+......+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233366788888887776655 777776543
No 187
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=46.49 E-value=12 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++.+.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 478999999765 7777766666655432 23567788887764
No 188
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=46.49 E-value=30 Score=29.55 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
.++++.++..++.|..+|.++..+.+.+.+++|.++.+..+.
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 667788888778888888888888888999999888876544
No 189
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=46.23 E-value=42 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=40.5
Q ss_pred HhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 50 LTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 50 ~~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
..+|+.+++| ...+.+|+.....+.+..+++.+.|..++++--+| .+.+.+
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l 97 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANS--RVSQKL 97 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCH--HHHHHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHH
Confidence 3578889999 78999999999999999999999888887775443 344443
No 190
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=46.02 E-value=14 Score=32.11 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC---------CchHHHhhcCeEEEEe
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ---------PSSHLFYLFDDLLLLS 109 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq---------p~~~i~~~fd~v~~L~ 109 (437)
+++++++||-=. +|+ .+++.|+.++++|..|+++-+. ++..+...+|.+.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 678999999643 432 3667788888889999998883 2344566677775543
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=45.90 E-value=20 Score=32.83 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----cCCEEEEEecCC
Q 013741 44 SISIEILTQPTVLLLDEPTS----------GLDSASAFFVIQVLKCIAL----DGRIVVCSIHQP 94 (437)
Q Consensus 44 ~ia~~l~~~p~ll~lDEPts----------gLD~~~~~~i~~~l~~l~~----~g~tvi~t~hqp 94 (437)
.+..+.-.+|.+|++||.-. +-|......+.+.+..+.. .+..+|++++.|
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 34445556889999999733 1255556677777776642 245677788766
No 192
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=45.68 E-value=28 Score=29.66 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..+.+.++..++.|.++|..+..+.+.+.+++|.++....|.
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD 165 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence 556677777777888888888777888999999888776543
No 193
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=44.09 E-value=0.44 Score=44.87 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=26.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 013741 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63 (437)
Q Consensus 32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts 63 (437)
...+||||+||+.+++++..+|++| ||++.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 3469999999999999999999975 88864
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=43.77 E-value=3 Score=36.65 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-HHhhcCeEEEEe
Q 013741 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH-LFYLFDDLLLLS 109 (437)
Q Consensus 36 SgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~-i~~~fd~v~~L~ 109 (437)
+.|+.+|..++.....+|+.+-++ ++.+++.....+.+.++.. .+.++|+.+|..... +...+|.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 578899999998888888654332 2344555444444444321 355788888764322 356788888774
No 195
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=43.30 E-value=31 Score=29.32 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
.++++.++..++.|..+|.++..+.+.+.+++|.++.+..|
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 56777777777788877777777788899999998888654
No 196
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=43.03 E-value=32 Score=29.27 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
.++.+.++..++.|..+|.++..+.+.+.+++|.++.+..+.
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 567777887777888888888888889999999998886543
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=43.00 E-value=23 Score=33.39 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=41.5
Q ss_pred HHHHHHHHHh---CCCEEEEeCCCCCCC--------HH----HHHHHHHHHHHHHh-cCCEEEEEecCCch---------
Q 013741 42 RLSISIEILT---QPTVLLLDEPTSGLD--------SA----SAFFVIQVLKCIAL-DGRIVVCSIHQPSS--------- 96 (437)
Q Consensus 42 Rv~ia~~l~~---~p~ll~lDEPtsgLD--------~~----~~~~i~~~l~~l~~-~g~tvi~t~hqp~~--------- 96 (437)
-+.....++. +++++++|.-+.=.. .. ...++++.|+++++ .+.+||++.|- ..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~-~~~~~~~~g~~ 269 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV-SAKPDAFFGMA 269 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE-ECC-------C
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce-eecCCCCCCCC
Confidence 3444555553 589999999875321 11 23566677777776 57777776553 22
Q ss_pred -------HHHhhcCeEEEEeC
Q 013741 97 -------HLFYLFDDLLLLSN 110 (437)
Q Consensus 97 -------~i~~~fd~v~~L~~ 110 (437)
.+.+.+|.++.|.+
T Consensus 270 ~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 270 EQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp CEESSHHHHHHHCSEEEEEEE
T ss_pred cCCCCcHHHHhcCcEEEEEEe
Confidence 24556677777764
No 198
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=42.92 E-value=8.1 Score=31.34 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=52.5
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEeeChhHHHHHHHH
Q 013741 52 QPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGDAKMAVKFFAE 128 (437)
Q Consensus 52 ~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~~G~~~~~~~~f~~ 128 (437)
+++.+++| .-.+.+|+.....+.+..+++.+.|..++++--+| .+.+.+++.-+.. =|+.-.+.+.+++.+.++.
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~ 123 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQ--DLRESLRAASLLDKIGEDHIFMTLPTAVQAFRR 123 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSS--HHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTT
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHcCChhhcCcceeECCHHHHHHHHHh
Confidence 46789999 77899999999999999999998888877775554 3555554332221 1333345677788776654
No 199
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.67 E-value=96 Score=31.12 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHHHHHHH--hCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh-cCCEEEEEecCCc-----------------
Q 013741 43 LSISIEIL--TQPTVLLLDEPTS---G---LDS-ASAFFVIQVLKCIAL-DGRIVVCSIHQPS----------------- 95 (437)
Q Consensus 43 v~ia~~l~--~~p~ll~lDEPts---g---LD~-~~~~~i~~~l~~l~~-~g~tvi~t~hqp~----------------- 95 (437)
+..++.++ .+|+++++|--+. + -+. ....++++.|+++++ .+.+||++.|...
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~d 422 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITD 422 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhh
Confidence 33444443 3699999996543 1 122 233467888889887 5889999888642
Q ss_pred ----hHHHhhcCeEEEEeC
Q 013741 96 ----SHLFYLFDDLLLLSN 110 (437)
Q Consensus 96 ----~~i~~~fd~v~~L~~ 110 (437)
..+.+.+|-|+.|..
T Consensus 423 lr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 423 LRGSGALRQLSDTIIALER 441 (503)
T ss_dssp CSSSSHHHHHCSEEEEEEE
T ss_pred hccchHhhecCcEEEEEEe
Confidence 236677899999863
No 200
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=41.82 E-value=34 Score=29.41 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
..+.+.++..++.|..+|.++..+.+.+.+++|.++.+..+
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 45667777777788888888877788899999988877644
No 201
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=40.37 E-value=55 Score=29.15 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 013741 45 ISIEILTQPTVLLLDEPTSGL-----------DSASAFFVIQVLKCIAL----DGRIVVCSIHQPS 95 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsgL-----------D~~~~~~i~~~l~~l~~----~g~tvi~t~hqp~ 95 (437)
+..+.-..|.++++||.-.=. +......+.+.+..+.. .+..+|.++..|.
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 333444568999999986432 22233344455555443 2446777777654
No 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=40.03 E-value=0.94 Score=45.46 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=27.6
Q ss_pred HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEE
Q 013741 13 TIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLL 57 (437)
Q Consensus 13 ~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~ 57 (437)
.|..+|+.+.. ....|||||+|| |+++|+.+|++..
T Consensus 279 rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 RLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 45667776542 224699999999 9999999999875
No 203
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=39.87 E-value=27 Score=30.28 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
.++.+.++..++.|..+|.++..+.+.+.+++|.++.+..+.
T Consensus 106 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 147 (201)
T 3fxa_A 106 GELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSK 147 (201)
T ss_dssp HHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 566777777777889998888888899999999999887553
No 204
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=39.78 E-value=40 Score=29.36 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCC-CCCHHH----------HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 52 QPTVLLLDEPTS-GLDSAS----------AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 52 ~p~ll~lDEPts-gLD~~~----------~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
+..+.+++++.. .+++.. ..++++.++..++.|..+|.++-.+.+.+.+++|.++.+..+.
T Consensus 73 g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 73 GYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 455666666543 233322 3667788887777888888888888889999999998876554
No 205
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=37.97 E-value=19 Score=28.68 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=39.9
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741 51 TQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 51 ~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~ 104 (437)
.+|+.+++| ...+.+|+.....+.+..+++.+ |..++++--+| .+.+.+++
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~--~v~~~l~~ 95 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEF--QPLRTMAR 95 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCH--HHHHHHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCH--HHHHHHHH
Confidence 678888888 67889999999999999999988 88887775443 34554443
No 206
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=37.90 E-value=15 Score=38.51 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=44.9
Q ss_pred cCCCCHH-HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEec
Q 013741 32 LRGISSG-EKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG-RIVVCSIH 92 (437)
Q Consensus 32 ~~~lSgG-erkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~t~h 92 (437)
..+++.+ +++...+...++.+|.-++++.+|.++|..+. ...+.++++...| +||++.+|
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 3455544 45778899999999999999999999998743 4677777776654 67777766
No 207
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=37.80 E-value=54 Score=26.44 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=36.6
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
.+++.+++| ...+.+|+.....+.+..+++.+.|..++++--+
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 93 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVS 93 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 578889999 6788999999999999999999888887777544
No 208
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=37.74 E-value=52 Score=28.34 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhh---cCeEEEEeCCe
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYL---FDDLLLLSNGE 112 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~---fd~v~~L~~G~ 112 (437)
..+++.++..++.|.++|..+..+.+.+.++ +|.++....+.
T Consensus 127 ~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 127 ANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 5677888887778988888888888899999 99888876543
No 209
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=36.62 E-value=2.2e+02 Score=25.88 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
++++|.+++++..++.+.=..-.|...|+.... .++-.....+.+.+-.++|+|--|++..... ++
T Consensus 80 ~s~~ei~~~l~~al~~vP~a~GvnNHmGS~~T~-----~~~~m~~vm~~l~~~gL~fvDS~Ts~~S~a~---------~~ 145 (245)
T 2nly_A 80 LSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVE-----NEKIMRAILEVVKEKNAFIIDSGTSPHSLIP---------QL 145 (245)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCEEEEEECTTGGG-----CHHHHHHHHHHHHHTTCEEEECCCCSSCSHH---------HH
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecccccchhc-----CHHHHHHHHHHHHHCCCEEEcCCCCcccHHH---------HH
Confidence 467888999999999975433344445542221 2333444445556677999999998875322 22
Q ss_pred Hh-cCCEE----EEEec--CCchHHHhhcCeEEEEe--CCeEEEeeCh
Q 013741 81 AL-DGRIV----VCSIH--QPSSHLFYLFDDLLLLS--NGETIYFGDA 119 (437)
Q Consensus 81 ~~-~g~tv----i~t~h--qp~~~i~~~fd~v~~L~--~G~~v~~G~~ 119 (437)
|+ .|... |..-| +-...|.+.+++..-+. +|..|-.|.+
T Consensus 146 A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~G~aIaIGhp 193 (245)
T 2nly_A 146 AEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHV 193 (245)
T ss_dssp HHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred HHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEECC
Confidence 22 34322 22233 22345556666665553 6777777754
No 210
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=36.27 E-value=1.2e+02 Score=28.33 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=32.9
Q ss_pred HHHHHHhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCc---hHHHhhcCeEE
Q 013741 45 ISIEILTQPTVLLLDEPTSG-------LDSASAFFVIQVLKCIAL-----DGRIVVCSIHQPS---SHLFYLFDDLL 106 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsg-------LD~~~~~~i~~~l~~l~~-----~g~tvi~t~hqp~---~~i~~~fd~v~ 106 (437)
+..+-..+|.++|+||.-+- ........+-+.++.+.. .+..+|.++..|. ..+.+.||+.+
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 174 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRI 174 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEE
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEE
Confidence 34444578999999997432 122222333344444431 3456777787763 23444555443
No 211
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=35.99 E-value=1.1e+02 Score=29.22 Aligned_cols=63 Identities=11% Similarity=0.240 Sum_probs=33.3
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHH--hcCCEEEEEecCC---chHHHhhcCeEEE
Q 013741 45 ISIEILTQPTVLLLDEPTSGLDS----------ASAFFVIQVLKCIA--LDGRIVVCSIHQP---SSHLFYLFDDLLL 107 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsgLD~----------~~~~~i~~~l~~l~--~~g~tvi~t~hqp---~~~i~~~fd~v~~ 107 (437)
+..+--.+|.+||+||--+=... ....++...+..+. ..+..+|.+++.| ...+.+-||+.+.
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~ 213 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIY 213 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEE
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEE
Confidence 33344468999999996532211 11223333333322 2345677788877 3445566666553
No 212
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=35.61 E-value=1.2e+02 Score=29.32 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=41.2
Q ss_pred HHHHHHHHHH--hCCCEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---Hh-cCCEEEEEecCCchH----
Q 013741 41 KRLSISIEIL--TQPTVLLLDEPTSGL-----DS--------ASAFFVIQVLKCI---AL-DGRIVVCSIHQPSSH---- 97 (437)
Q Consensus 41 kRv~ia~~l~--~~p~ll~lDEPtsgL-----D~--------~~~~~i~~~l~~l---~~-~g~tvi~t~hqp~~~---- 97 (437)
+-+.+...++ .+++++++|..++=. |. ..+..+.+.+++| ++ .+.+||++.|- +..
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~-~~~~~~~ 217 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV-REKIGVM 217 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec-ccccCcc
Confidence 3455666666 468999999988643 11 1223344445444 55 56777776654 221
Q ss_pred ------------HHhhcCeEEEEeCCeE
Q 013741 98 ------------LFYLFDDLLLLSNGET 113 (437)
Q Consensus 98 ------------i~~~fd~v~~L~~G~~ 113 (437)
+.+.+|-++.|.+++.
T Consensus 218 fg~p~~~~gg~al~~~a~~rl~L~r~~~ 245 (366)
T 1xp8_A 218 YGNPETTTGGRALKFYASVRLDVRKIGQ 245 (366)
T ss_dssp --------CHHHHHHHCSEEEEEEEESC
T ss_pred cCCccccCCcchhhheeeEEEEEEecch
Confidence 3455677777776553
No 213
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=35.10 E-value=56 Score=28.91 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHh--cCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIAL--DGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~--~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++ .|..+|.++..+.+.+.+++|.++....+.
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 3677888888888 899988888888889999999998886543
No 214
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=34.56 E-value=52 Score=31.54 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..|.+.+.+.+|.++.+..|.
T Consensus 104 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 104 SPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 4678888888777899999999999999999999999987665
No 215
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=34.31 E-value=79 Score=25.55 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=47.2
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-C-eEEEeeChhHHHHH
Q 013741 52 QPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN-G-ETIYFGDAKMAVKF 125 (437)
Q Consensus 52 ~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~-G-~~v~~G~~~~~~~~ 125 (437)
+++.+++| .-.+.+|+.....+.+..+++.+.|..+.++--+ ..+.+.+++.=+... | +.-.+.+.++++++
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~ 137 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCS--AQVVNDLTSNRFFENPALKELLFHSIHDAVLG 137 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCC--HHHHHHHHHTTTTSSGGGGGGEESSHHHHHHH
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHhCCCeeccCccceEECcHHHHHHH
Confidence 67888888 6788999999999999999999888877777544 334444433222211 2 22234455555554
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=33.96 E-value=34 Score=34.64 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741 45 ISIEILTQPTVLLLDEPT----------SGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS 95 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPt----------sgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~ 95 (437)
+..+.-..|.+||+||-- ..++.....++.+.+..+.. .+..+|.+++.|.
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 344445678899999961 12222333444444444333 2456777888874
No 217
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=33.40 E-value=1.1e+02 Score=23.86 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=24.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
.+|+++++|--..+.|. .++++.+++....-..|+++.+.
T Consensus 48 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSG---MDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp TTCCEEEEESCCSSSCH---HHHHHHHHHHCTTCEEEEEECTT
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCeEEEEECCC
Confidence 58999999988887774 44555666533222334444443
No 218
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.35 E-value=45 Score=29.85 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=31.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc----------------CCEEEEEecCCch---HHHhhcCeEEEEe
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD----------------GRIVVCSIHQPSS---HLFYLFDDLLLLS 109 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~----------------g~tvi~t~hqp~~---~i~~~fd~v~~L~ 109 (437)
.+.+|++|||.+. .....+-+.++.+-+. ...+|+|+..+.. ....+-+|+..+.
T Consensus 102 ~~~kIiiLDEad~----~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~ 175 (212)
T 1tue_A 102 TDTKVAMLDDATT----TCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFE 175 (212)
T ss_dssp TTCSSEEEEEECH----HHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEE
T ss_pred CCCCEEEEECCCc----hhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEE
Confidence 4678999999972 3333333455554221 2467777766321 1234556777653
No 219
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=32.80 E-value=56 Score=31.01 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 87 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 87 TPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 4567777777777899999999999999999999999887664
No 220
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=32.23 E-value=1.5e+02 Score=22.33 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=23.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h 92 (437)
..|+++++|--..+.|. .++.+.+++... +..+|+.+.
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~-~~~ii~~s~ 83 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDG---IEILKRMKVIDE-NIRVIIMTA 83 (124)
T ss_dssp HCCSEEEEESCCTTCCH---HHHHHHHHHHCT-TCEEEEEES
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHhCC-CCCEEEEEc
Confidence 58999999988878775 345555555322 334444333
No 221
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=32.14 E-value=41 Score=29.51 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
.++++.++..++.|.++|..+-.+.+.+.+++|.++.+..|
T Consensus 145 ~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 145 ANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 56777777777788888888877778899999988887765
No 222
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=31.86 E-value=51 Score=25.16 Aligned_cols=53 Identities=11% Similarity=-0.051 Sum_probs=40.8
Q ss_pred HhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741 50 LTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (437)
Q Consensus 50 ~~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~ 104 (437)
..+|+.+++| ....-+|+.....+.+..+++.+.|..+.++--+ ..+.+++++
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~ 94 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMN--EASETMVDR 94 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHH--HHHTTCC--
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHH
Confidence 3578888888 6788999999999999999999998888877543 345555544
No 223
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=31.80 E-value=20 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=29.4
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741 50 LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (437)
Q Consensus 50 ~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (437)
..||+|+|=||..+|=|......+.+.|..|+..
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~~ 102 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLAIS 102 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHHHH
Confidence 3589999999999999998888888888888764
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=31.29 E-value=75 Score=25.69 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=31.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp 94 (437)
.+..++++||.- .|+......+.+.+.+..+.+..+|+++..+
T Consensus 74 a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 74 AEGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 457899999975 5788888888888776544455677777655
No 225
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=30.73 E-value=73 Score=27.23 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhh---cCeEEEEeCC
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYL---FDDLLLLSNG 111 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~---fd~v~~L~~G 111 (437)
..+++.++..++.|.++|..+..+.+.+.++ +|.++.+..+
T Consensus 123 ~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 123 RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 6677888887778988888888888888888 8887776543
No 226
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=30.27 E-value=2e+02 Score=34.00 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=45.3
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHH---HHh-cCCEEEEEecCC--------
Q 013741 42 RLSISIEIL--TQPTVLLLDEPTSGLDS-------------ASAFFVIQVLKC---IAL-DGRIVVCSIHQP-------- 94 (437)
Q Consensus 42 Rv~ia~~l~--~~p~ll~lDEPtsgLD~-------------~~~~~i~~~l~~---l~~-~g~tvi~t~hqp-------- 94 (437)
-...++.++ .+|+++++|+...=... ....++.+.+++ +++ .|.+||++.|..
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G 877 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 877 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC
Confidence 344444443 58999999999875521 122345444444 454 688888887731
Q ss_pred -------chHHHhhcCeEEEEeCCeE
Q 013741 95 -------SSHLFYLFDDLLLLSNGET 113 (437)
Q Consensus 95 -------~~~i~~~fd~v~~L~~G~~ 113 (437)
+..+.+.+|-++.|++++.
T Consensus 878 dp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 878 NPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp CCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred CccccCCcchhhheeeEEEEEEeccc
Confidence 2246777888888975543
No 227
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=30.08 E-value=2.2e+02 Score=26.10 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 013741 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66 (437)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD 66 (437)
++++|.+++++..++.+.=..-.|...|+. +.. .++......+.+.+-.++|+|--|++-.
T Consensus 107 ~s~~ei~~~l~~al~~vP~a~GvnNHmGS~----~T~-~~~~M~~vm~~L~~~gL~FlDS~Ts~~S 167 (261)
T 2qv5_A 107 DPAKVNIDRLHRSMAKITNYTGVMNYLGGR----FLA-EQSALEPVMRDIGKRGLLFLDDGSSAQS 167 (261)
T ss_dssp SCHHHHHHHHHHHHTTCCCCSEEEEEECTT----GGG-CHHHHHHHHHHHHHTTCEEEECSCCTTC
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecccccc----hhc-CHHHHHHHHHHHHHCCCEEEcCCCCccc
Confidence 467888889999888875433344445542 221 2333333334455568999999997654
No 228
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=29.92 E-value=1.6e+02 Score=21.95 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=37.9
Q ss_pred HhCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 50 LTQP-TVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 50 ~~~p-~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
-..+ +.+++| .-.+.+|+.....+.+..+++.+.|..+.++--+ ..+.+++
T Consensus 40 ~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l 92 (110)
T 1sbo_A 40 STTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLK--ESISRIL 92 (110)
T ss_dssp HHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCC--HHHHHHH
T ss_pred hcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHH
Confidence 3344 778888 6788999999999999999998888877666433 3344443
No 229
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=29.75 E-value=1.2e+02 Score=22.96 Aligned_cols=40 Identities=23% Similarity=0.104 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 013741 52 QPTVLLLDEPTSG-LDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (437)
Q Consensus 52 ~p~ll~lDEPtsg-LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp 94 (437)
+|+++++|--..+ .|. .++++.+++....-..++++.+..
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHCTTCCEEEEESSCC
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCcc
Confidence 7999999987775 664 456666665433333455555443
No 230
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=28.61 E-value=63 Score=28.21 Aligned_cols=42 Identities=10% Similarity=-0.002 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc---CeEEEEeCC
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF---DDLLLLSNG 111 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f---d~v~~L~~G 111 (437)
..++++.++..++.|.++|..+..+.+.+.+++ |.++.+...
T Consensus 127 t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~ 171 (201)
T 3trj_A 127 SENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSD 171 (201)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCC
Confidence 356777777777789888888888888899999 988877644
No 231
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=27.63 E-value=35 Score=31.98 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhc-CC--EEEEEecCCchHHHhhcCeEE
Q 013741 35 ISSGEKKRLSISIEIL--TQPTVLLLDEPTSGLDSAS-AFFVIQVLKCIALD-GR--IVVCSIHQPSSHLFYLFDDLL 106 (437)
Q Consensus 35 lSgGerkRv~ia~~l~--~~p~ll~lDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~t~hqp~~~i~~~fd~v~ 106 (437)
+|+|++ .++..+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 4455555 68889988 7888876 66777888888763 43 566666664 35666666654
No 232
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=27.30 E-value=73 Score=30.50 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G 111 (437)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|
T Consensus 102 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 102 TAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 456677777776779999999999999999999999998877
No 233
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=27.03 E-value=1.6e+02 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=24.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
.+|+++++|--..+.|. .++.+.+++....-..++++.+.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCCC
Confidence 47999999988777664 35556665543333344445443
No 234
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.94 E-value=1.1e+02 Score=27.31 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=25.5
Q ss_pred HhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 013741 50 LTQPTVLLLDEP----------TSGLDSASAFFVIQVLKCIAL----DGRIVVCSIHQPS 95 (437)
Q Consensus 50 ~~~p~ll~lDEP----------tsgLD~~~~~~i~~~l~~l~~----~g~tvi~t~hqp~ 95 (437)
-..|.++++||- ..|-+......+.+.|+.+-. .+..+|.++++|.
T Consensus 102 ~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 346789999996 111111222333444554432 3457888888874
No 235
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=26.66 E-value=62 Score=30.87 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..|.+.+.+.+|.++.+..|.
T Consensus 103 T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~ 145 (334)
T 3hba_A 103 SPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGE 145 (334)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCC
Confidence 4677788887777899999999889999999999999998665
No 236
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=26.17 E-value=62 Score=27.24 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~ 110 (437)
.++.+.++..++.|.++|..+..+.+ +.+++|.++....
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 66778888777788888888877777 8899998887753
No 237
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=26.05 E-value=1e+02 Score=23.37 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=23.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
..|+++++|--..+.|. .++++.+++....-..+++|.|.
T Consensus 46 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDMSG---VELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp CCSEEEEEECCSTTSCH---HHHHHHHHHTTCCCCEEEEECTT
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcCCCCCEEEEECCC
Confidence 47999999987777774 34555555432222344445443
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=25.59 E-value=59 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=35.2
Q ss_pred HHHHHHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHh----------cCCEEEEEecCCchHHHhh
Q 013741 45 ISIEILTQP-TVLLLDEPTSGLDSASAFFVIQVLKCIAL----------DGRIVVCSIHQPSSHLFYL 101 (437)
Q Consensus 45 ia~~l~~~p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~----------~g~tvi~t~hqp~~~i~~~ 101 (437)
+..++-..| .++++||. ..+++.....+.+.|.+-.. .+..+|++++.+...+.+.
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~ 177 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEG 177 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTT
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhh
Confidence 334444445 79999998 56788877777777765321 1234777777754444443
No 239
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=25.49 E-value=1.7e+02 Score=22.97 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=37.1
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741 51 TQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (437)
Q Consensus 51 ~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f 102 (437)
.+++.+++| +-.+.+|+.....+.+..+++.+.|..+.++-- +..+.+++
T Consensus 50 ~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l 100 (125)
T 2ka5_A 50 KGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSP--NEKVERVL 100 (125)
T ss_dssp TTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECC--CHHHHHHH
T ss_pred CCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHH
Confidence 456778888 678899999999999999999887777666632 23444444
No 240
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=25.01 E-value=71 Score=27.01 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
.++.++++||. ..++......+.+.+.+. ..+..+|+++..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 46889999996 346666666666666552 23456677776653
No 241
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.74 E-value=1.8e+02 Score=21.47 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=25.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h 92 (437)
.+|+++++|-...+.|. .++.+.+++....-..++++.+
T Consensus 44 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 44 GNYDLVILDIEMPGISG---LEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHccCCCCeEEEEECC
Confidence 57999999998888774 3556666654333334555544
No 242
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=24.59 E-value=0.98 Score=46.50 Aligned_cols=74 Identities=5% Similarity=-0.099 Sum_probs=51.0
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHH--HhhcCeEEEEeCCeEEEe-eChhHH
Q 013741 47 IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHL--FYLFDDLLLLSNGETIYF-GDAKMA 122 (437)
Q Consensus 47 ~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i--~~~fd~v~~L~~G~~v~~-G~~~~~ 122 (437)
++|..| +||++ ||.+.+|+ ++..+... |.+ -+.++.+.+|.. .++ .++.|++..+.+|.++.. +++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~e---Lt~~~~~~iP~vsa~m-d~~t~~~la~~ia~~gg~gii~~~~t~e~~ 100 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTSA---LTRKITLKTPLISSPM-DTVTEADMAIAMALMGGIGFIHHNCTPEFQ 100 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCEE---SSSSCEESSCEEECCC-TTTCSHHHHHHHHHTTCEEEECCSSCHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEee---ccCCeeEeceEEEEeh-hhhhhhhHHHHHHhcCCeeEEecCCCHHHH
Confidence 678888 99999 99999999 45444332 322 245666677753 455 677888888877777754 577776
Q ss_pred HHHHH
Q 013741 123 VKFFA 127 (437)
Q Consensus 123 ~~~f~ 127 (437)
.++..
T Consensus 101 ~~~v~ 105 (514)
T 1jcn_A 101 ANEVR 105 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 243
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.51 E-value=2e+02 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 013741 43 LSISIEILTQPTVLLLDEPTSGL----------DSASAFFVIQVLKCIAL----DGRIVVCSIHQPS 95 (437)
Q Consensus 43 v~ia~~l~~~p~ll~lDEPtsgL----------D~~~~~~i~~~l~~l~~----~g~tvi~t~hqp~ 95 (437)
-.+..+--..|.|+|+||--+-. |......+.+.|..+-. ++..||.++..|.
T Consensus 232 ~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 232 ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 34445556789999999965422 33444455666666642 3557888999885
No 244
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.49 E-value=1.5e+02 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.532 Sum_probs=19.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
.+|+++++|-...+.|. .++++.+++
T Consensus 45 ~~~dlii~d~~l~~~~g---~~~~~~l~~ 70 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNG---IQVLETLRK 70 (134)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCh---HHHHHHHHh
Confidence 58999999998888774 445555554
No 245
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=24.19 E-value=47 Score=31.77 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEec
Q 013741 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVVCSIH 92 (437)
Q Consensus 35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~t~h 92 (437)
-++.++++..++...+.+|+++++.-..+..|... ....+.++.+...|. ++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46778899999999999999777764333445433 445666777666554 5555543
No 246
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.17 E-value=2.1e+02 Score=22.51 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=25.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
.+|+++++|--..+.|. .++++.+++....-..++++.+.
T Consensus 50 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 50 TTPDIVVMDLTLPGPGG---IEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp TCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESCC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHHhCCCCeEEEEECCC
Confidence 47999999988877774 45666666643333344444443
No 247
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=24.15 E-value=1e+02 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 110 T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 152 (367)
T 2poc_A 110 TADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGP 152 (367)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCC
Confidence 4677788887777898888888888899999999988887664
No 248
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.01 E-value=42 Score=31.50 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~ 96 (437)
+++++++|| ...++......+.+.+.+... ...+|+++++|..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 456999999 778998888888887776543 3445666666643
No 249
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.96 E-value=1.9e+02 Score=23.00 Aligned_cols=75 Identities=8% Similarity=0.050 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
...+.+.+.++..|..-.. .. -++.|-. ......-.+|+++++|--..+.|. .++++.|++....-
T Consensus 47 ~~~~~l~~~L~~~g~~v~~--~~-------~~~~~al--~~l~~~~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIID--TA-------ADGEEAV--IKYKNHYPNIDIVTLXITMPKMDG---ITCLSNIMEFDKNA 112 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEE--EE-------SSHHHHH--HHHHHHGGGCCEEEECSSCSSSCH---HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCeEEE--EE-------CCHHHHH--HHHHhcCCCCCEEEEeccCCCccH---HHHHHHHHhhCCCC
Confidence 4455677788877754210 11 1332221 111221127899999988888774 45666666544333
Q ss_pred CEEEEEecC
Q 013741 85 RIVVCSIHQ 93 (437)
Q Consensus 85 ~tvi~t~hq 93 (437)
..|+++.+.
T Consensus 113 ~ii~ls~~~ 121 (157)
T 3hzh_A 113 RVIMISALG 121 (157)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeccC
Confidence 455555554
No 250
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=23.67 E-value=82 Score=30.49 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDG-RIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g-~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.| .++|.++..+.+.+.+.+|.++.+..|.
T Consensus 114 T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~g~ 157 (372)
T 3tbf_A 114 TADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGV 157 (372)
T ss_dssp CHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecCCc
Confidence 467778888877788 8888888889999999999999988765
No 251
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=23.21 E-value=1.9e+02 Score=22.68 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=18.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
.+|+++++|--..+.|. .++++.+++
T Consensus 60 ~~~dlii~d~~l~~~~g---~~~~~~l~~ 85 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDG---AQVAAAVRS 85 (152)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHh
Confidence 58999999988888774 445555554
No 252
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=23.20 E-value=2.1e+02 Score=27.07 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHH-HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKK-RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (437)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerk-Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~ 85 (437)
+..|+++++.+|..+..-... ...+=|..++. |+.-...-+.++|+++..-|+-..-. ....+ ++.+++.|.
T Consensus 31 ~~dv~~i~~~~G~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~DvIi~q~P~~~~~~-~~~~~---~~~lk~~~~ 103 (339)
T 3rhz_A 31 QNTVTDVAVSLGYRELGIYCY---QIHTDSESELSKRLDGIVAGLRHGDVVIFQTPTWNTTE-FDEKL---MNKLKLYDI 103 (339)
T ss_dssp HHHHHHHHHHTTCEEEEEECC---CGGGSCHHHHHHHHHHHTTTCCTTCEEEEEECCSSCHH-HHHHH---HHHHTTSSC
T ss_pred HHHHHHHHHHCCCeEEEeecc---ccccccHHHHHHHHHHHHhcCCCCCEEEEeCCCcchhh-HHHHH---HHHHHhcCC
Confidence 457999999999875432111 11122444443 55544556889999999999743221 12223 344444578
Q ss_pred EEEEEecCCchH--------------HHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCC
Q 013741 86 IVVCSIHQPSSH--------------LFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFP 132 (437)
Q Consensus 86 tvi~t~hqp~~~--------------i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~ 132 (437)
.++..+|+.... +++.+|.|++.++ ...+++.+.|.+
T Consensus 104 k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~----------~~~~~l~~~G~~ 154 (339)
T 3rhz_A 104 KIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQ----------KMIDKLRDFGMN 154 (339)
T ss_dssp EEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCH----------HHHHHHHHTTCC
T ss_pred EEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCH----------HHHHHHHHcCCC
Confidence 899999986432 2445566555543 345677777764
No 253
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=23.02 E-value=35 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (437)
Q Consensus 52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~ 82 (437)
+|+|+|=||-.+|-|......+.+.|..|+.
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~ 93 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAI 93 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHH
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHH
Confidence 8999999999999888888888888888875
No 254
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.94 E-value=2e+02 Score=28.59 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh----cCCEEEEEecCCchHHHhhcCeEEE
Q 013741 42 RLSISIEILTQPTVLLLDEPTSG----------LDSASAFFVIQVLKCIAL----DGRIVVCSIHQPSSHLFYLFDDLLL 107 (437)
Q Consensus 42 Rv~ia~~l~~~p~ll~lDEPtsg----------LD~~~~~~i~~~l~~l~~----~g~tvi~t~hqp~~~i~~~fd~v~~ 107 (437)
|-.+..+-...|.|+|+||--+- -|......+...|..+-. .+..||.+|.+|.. .|.- +
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-l 337 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-L 337 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-T
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-H
Confidence 44555666678999999998532 234444555666666642 35689999999853 3443 3
Q ss_pred EeCCe---EEEeeChh
Q 013741 108 LSNGE---TIYFGDAK 120 (437)
Q Consensus 108 L~~G~---~v~~G~~~ 120 (437)
+..|| .++.+.|+
T Consensus 338 lRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 338 LRPGRLDRKVEIPLPN 353 (437)
T ss_dssp TSTTSEEEEECCCCCC
T ss_pred hCCCccceeeecCCcC
Confidence 45554 46677664
No 255
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=22.86 E-value=60 Score=31.19 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..|.+.+.+.+|.++.+..|.
T Consensus 95 T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~~g~ 137 (352)
T 3g68_A 95 SYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVNCGE 137 (352)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCCCC
T ss_pred CHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeCCCC
Confidence 4677788888777899999999999999999999999887665
No 256
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=22.77 E-value=1.1e+02 Score=29.55 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 120 T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 162 (375)
T 2zj3_A 120 TADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGP 162 (375)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeecCCc
Confidence 4667778887777898888888888899999999998887664
No 257
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.70 E-value=1.9e+02 Score=21.97 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=24.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC-EEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR-IVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~-tvi~t~hq 93 (437)
..|+++++|--..+.|. .++++.+++... .+. .|+++.+.
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEecCC
Confidence 36999999988877774 455666665321 223 44444444
No 258
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=22.59 E-value=2e+02 Score=22.04 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
.+|+++++|--..+.|. .++.+.|++.. .+..+|+.+..
T Consensus 48 ~~~dlvilD~~lp~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 86 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTG---LEVLAEIRKKH-LNIKVIIVTTF 86 (133)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHTT-CSCEEEEEESC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHHC-CCCcEEEEecC
Confidence 57999999988777774 34555555522 23444444443
No 259
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.56 E-value=1.6e+02 Score=22.69 Aligned_cols=41 Identities=7% Similarity=0.192 Sum_probs=24.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH--HHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKC--IALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~--l~~~g~tvi~t~hq 93 (437)
.+|+++++|--..| ..+..++++.|++ ....-..|++|.+.
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 56999999976540 3445667777776 22233344445443
No 260
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.85 E-value=1.4e+02 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=20.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l 80 (437)
..|+++++|--..+.|. .++++.|++.
T Consensus 59 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~ 85 (146)
T 3ilh_A 59 RWPSIICIDINMPGING---WELIDLFKQH 85 (146)
T ss_dssp CCCSEEEEESSCSSSCH---HHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHHh
Confidence 57999999988888774 4566666663
No 261
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=21.82 E-value=1e+02 Score=28.85 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 71 ~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..+++.++..++.|.++|.++..|.+.+.+++|.++....|.
T Consensus 154 ~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~ 195 (306)
T 1nri_A 154 PYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGP 195 (306)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCC
Confidence 567777777777899888888888899999999988887553
No 262
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.77 E-value=1.9e+02 Score=22.54 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=24.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
..|+++++|--..+.| ..++++.|++....-..|+++.+.
T Consensus 66 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 66 DAFDILMIDGAALDTA---ELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp TTCSEEEEECTTCCHH---HHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCcc---HHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6899999998776644 455666666543222344444443
No 263
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=21.75 E-value=2.4e+02 Score=21.33 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=25.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~t~hq 93 (437)
..|+++++|--..+.|. .++.+.+++...... .+++|.+.
T Consensus 47 ~~~dlvllD~~l~~~~g---~~~~~~l~~~~~~~~~ii~ls~~~ 87 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDG---LAVLERIRAGFEHQPNVIMLTAFG 87 (130)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHHHCSSCCEEEEEEETT
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCcEEEEecCC
Confidence 47999999988888774 455666665212233 44455554
No 264
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.71 E-value=1.4e+02 Score=23.10 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=21.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h 92 (437)
.+|+++++|- ..+. ...++++.+++... +..+|+.+.
T Consensus 47 ~~~dlvi~d~-~~~~---~g~~~~~~l~~~~~-~~pii~ls~ 83 (142)
T 2qxy_A 47 EKIDLVFVDV-FEGE---ESLNLIRRIREEFP-DTKVAVLSA 83 (142)
T ss_dssp SCCSEEEEEC-TTTH---HHHHHHHHHHHHCT-TCEEEEEES
T ss_pred cCCCEEEEeC-CCCC---cHHHHHHHHHHHCC-CCCEEEEEC
Confidence 5799999998 5443 34566666665322 344444433
No 265
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=21.40 E-value=1.5e+02 Score=23.47 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=42.6
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741 52 QPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (437)
Q Consensus 52 ~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~ 127 (437)
+++.+++| .-..-+|+.....+.+..+.+...|..++++-=+| ++.+.+...=+ +-+.+..+.+.+++.++..
T Consensus 42 ~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p--~va~~l~~~G~-~l~~i~~~~~l~~Al~~l~ 115 (123)
T 3zxn_A 42 AGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKP--AVAITLTEMGL-DLRGMATALNLQKGLDKLK 115 (123)
T ss_dssp CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCH--HHHHHHHHTTC-CSTTSEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHhCC-CccceEEECCHHHHHHHHH
Confidence 67788888 77777888888888888888877665555554343 34433322111 0122234455555555443
No 266
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.40 E-value=1.4e+02 Score=23.58 Aligned_cols=39 Identities=8% Similarity=-0.078 Sum_probs=24.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
..|+++++|-...+.|. .++++.+++... ...+|+.+..
T Consensus 50 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~-~~~ii~ls~~ 88 (154)
T 2rjn_A 50 TSVQLVISDMRMPEMGG---EVFLEQVAKSYP-DIERVVISGY 88 (154)
T ss_dssp SCCSEEEEESSCSSSCH---HHHHHHHHHHCT-TSEEEEEECG
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHHhCC-CCcEEEEecC
Confidence 47999999998888774 355556655322 3444444433
No 267
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.25 E-value=94 Score=23.76 Aligned_cols=72 Identities=7% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (437)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g 84 (437)
...+.+.+.++..|..-. .. -|+-|-.+ ..--.+|+++++|--..+.| ..++++.+++....-
T Consensus 18 ~~~~~l~~~L~~~g~~v~---~~-------~~~~~a~~----~l~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~ 80 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTV---LA-------ADGVDALE----LLGGFTPDLMICDIAMPRMN---GLKLLEHIRNRGDQT 80 (130)
T ss_dssp HHHHHHHHHHHHTTCEEE---EE-------SCHHHHHH----HHTTCCCSEEEECCC--------CHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCceEE---Ee-------CCHHHHHH----HHhcCCCCEEEEecCCCCCC---HHHHHHHHHhcCCCC
Confidence 345567777887775321 11 13333211 11234699999997766654 345555555532223
Q ss_pred CEEEEEecC
Q 013741 85 RIVVCSIHQ 93 (437)
Q Consensus 85 ~tvi~t~hq 93 (437)
..+++|.+.
T Consensus 81 ~ii~~t~~~ 89 (130)
T 3eod_A 81 PVLVISATE 89 (130)
T ss_dssp CEEEEECCC
T ss_pred CEEEEEcCC
Confidence 344555444
No 268
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=21.25 E-value=2e+02 Score=22.20 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=24.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
..|+++++|--..|.|. .++++.|++.......|+++.+.
T Consensus 43 ~~~dlvl~D~~lp~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 43 EWVQVIICDQRMPGRTG---VDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp SCEEEEEEESCCSSSCH---HHHHHHHHHHCTTSEEEEEESCT
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCcEEEEeCCC
Confidence 57999999998888875 35555555532222344444443
No 269
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=21.15 E-value=2.3e+02 Score=26.25 Aligned_cols=62 Identities=11% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHHh--cCCEEEEEecCCc---hHHHhhcCeEE
Q 013741 45 ISIEILTQPTVLLLDEPTSGL----------DSASAFFVIQVLKCIAL--DGRIVVCSIHQPS---SHLFYLFDDLL 106 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPtsgL----------D~~~~~~i~~~l~~l~~--~g~tvi~t~hqp~---~~i~~~fd~v~ 106 (437)
+..+--.+|.+|++||--+=. ......++...+..+.. .+..||.+++.|. ..+.+-||+.+
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i 179 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 179 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEE
T ss_pred HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEE
Confidence 344445688999999964211 11223334444443322 2445666777653 23444556544
No 270
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=20.88 E-value=69 Score=30.99 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (437)
Q Consensus 70 ~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~ 112 (437)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 110 T~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~~g~ 152 (366)
T 3knz_A 110 SLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGE 152 (366)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCCCC
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecCCCc
Confidence 3567777887777899999999999999999999998887665
No 271
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.78 E-value=1.4e+02 Score=23.63 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=23.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
.+|+++++|--..+.|. .++++.|++.. .+..||+.+..
T Consensus 65 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 103 (150)
T 4e7p_A 65 ESVDIAILDVEMPVKTG---LEVLEWIRSEK-LETKVVVVTTF 103 (150)
T ss_dssp SCCSEEEECSSCSSSCH---HHHHHHHHHTT-CSCEEEEEESC
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCeEEEEeCC
Confidence 57999999988877764 44555555432 23344444433
No 272
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.73 E-value=63 Score=28.35 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.2
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCch---------HHHhhcCeEEEEe
Q 013741 50 LTQPTVLLLDEPTS----GLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSS---------HLFYLFDDLLLLS 109 (437)
Q Consensus 50 ~~~p~ll~lDEPts----gLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~---------~i~~~fd~v~~L~ 109 (437)
-.+|+++++|.-+. .-|.....+++..|+++++ .|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999996432 1144556678888888887 68899999886432 1345678888875
No 273
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=20.43 E-value=2.1e+02 Score=27.36 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=12.5
Q ss_pred HHHHHHhCCCEEEEeCC
Q 013741 45 ISIEILTQPTVLLLDEP 61 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEP 61 (437)
+..+--.+|.+||+||-
T Consensus 200 ~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQV 216 (389)
T ss_dssp HHHHHHSSSEEEEEETG
T ss_pred HHHHHhcCCeEEEEECc
Confidence 33344567899999998
No 274
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.37 E-value=83 Score=31.29 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741 45 ISIEILTQPTVLLLDEPT-SG--LDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (437)
Q Consensus 45 ia~~l~~~p~ll~lDEPt-sg--LD~~~~~~i~~~l~~l~~~g~tvi~t~hq 93 (437)
++.+...+++++++|+|. .+ .|.....++.+.++.+......+++..|.
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 444434589999999997 34 78877777777666554455555555554
No 275
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.31 E-value=2.6e+02 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=18.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~ 79 (437)
.+|+++++|--..+.|. .++.+.+++
T Consensus 43 ~~~dlil~D~~l~~~~g---~~~~~~l~~ 68 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDEDG---LSLIRRWRS 68 (121)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHh
Confidence 57999999987777775 345555554
No 276
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.26 E-value=2.4e+02 Score=21.44 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h 92 (437)
..|+++++|--..+.|. .++++.+++....-..++++.+
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 46 EKPDLIVLDVMLPKLDG---IEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HCCSEEEEESSCSSSCH---HHHHHHHHHTTCCCCEEEEECT
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHcCCCCCCEEEEECC
Confidence 57999999988888774 3455555543222234444444
No 277
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.09 E-value=1.8e+02 Score=22.38 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=24.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Q 013741 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQ 93 (437)
Q Consensus 51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hq 93 (437)
..|+++++|--..+.|. .++++.+++... .+..+|+.+..
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 46999999988777774 455555554321 23444444443
No 278
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=20.08 E-value=1.4e+02 Score=31.40 Aligned_cols=43 Identities=5% Similarity=0.071 Sum_probs=31.2
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741 48 EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (437)
Q Consensus 48 ~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~ 95 (437)
.-..++.++++| |+.|+|..+. +.++.+.+.+.++|+.+|...
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~----~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTE----RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHH----HHHHHHHHTTCCEEEEEECGG
T ss_pred HhhcCcEEEEEc-CCcccchhHH----HHHHHHHHccCCEEEEecCCc
Confidence 345688889999 9999998776 333444446788888888754
Done!