Query 013743
Match_columns 437
No_of_seqs 117 out of 1468
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00013 groEL chaperonin GroE 100.0 2.1E-88 4.6E-93 714.1 50.4 431 1-432 110-542 (542)
2 PRK12849 groEL chaperonin GroE 100.0 1.8E-87 3.9E-92 707.1 50.4 432 1-434 110-541 (542)
3 PRK12852 groEL chaperonin GroE 100.0 2.3E-86 5E-91 700.9 50.3 433 1-433 111-544 (545)
4 PRK14104 chaperonin GroEL; Pro 100.0 1.8E-85 3.9E-90 692.5 50.1 436 1-437 111-546 (546)
5 PRK12850 groEL chaperonin GroE 100.0 2.4E-85 5.1E-90 691.9 50.3 430 1-432 111-542 (544)
6 PRK12851 groEL chaperonin GroE 100.0 1.8E-84 3.9E-89 684.8 49.8 423 1-424 111-533 (541)
7 PTZ00114 Heat shock protein 60 100.0 1.1E-83 2.5E-88 681.1 48.9 419 1-419 122-544 (555)
8 cd03344 GroEL GroEL_like type 100.0 2.2E-83 4.7E-88 674.2 47.9 412 1-413 108-519 (520)
9 TIGR02348 GroEL chaperonin Gro 100.0 2.9E-82 6.2E-87 666.8 48.4 414 1-416 109-523 (524)
10 PLN03167 Chaperonin-60 beta su 100.0 1.1E-81 2.5E-86 667.5 47.2 419 1-420 166-586 (600)
11 CHL00093 groEL chaperonin GroE 100.0 3.6E-81 7.7E-86 659.2 46.8 415 1-417 110-527 (529)
12 KOG0356 Mitochondrial chaperon 100.0 7.6E-71 1.6E-75 552.0 33.3 418 1-421 124-543 (550)
13 KOG0361 Chaperonin complex com 100.0 2.5E-68 5.3E-73 511.6 28.6 377 1-433 116-542 (543)
14 TIGR02339 thermosome_arch ther 100.0 3.7E-67 8.1E-72 553.6 39.9 354 1-413 112-518 (519)
15 cd03343 cpn60 cpn60 chaperonin 100.0 4.7E-67 1E-71 553.1 39.8 355 1-414 111-516 (517)
16 TIGR02347 chap_CCT_zeta T-comp 100.0 7.9E-67 1.7E-71 550.5 40.2 359 1-418 112-529 (531)
17 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.8E-67 3.9E-72 550.7 35.0 350 1-415 108-483 (484)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-66 2.2E-71 550.9 38.6 362 1-416 104-527 (527)
19 TIGR02344 chap_CCT_gamma T-com 100.0 3.1E-66 6.7E-71 547.3 39.3 358 1-417 112-524 (525)
20 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6.2E-66 1.4E-70 544.6 40.0 359 1-415 112-520 (522)
21 TIGR02340 chap_CCT_alpha T-com 100.0 7.8E-66 1.7E-70 544.9 40.5 364 1-418 108-533 (536)
22 cd03338 TCP1_delta TCP-1 (CTT 100.0 8E-66 1.7E-70 543.2 39.4 357 1-414 104-515 (515)
23 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.5E-65 3.3E-70 540.6 40.9 357 1-417 111-516 (517)
24 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7.2E-66 1.6E-70 544.4 38.5 353 1-412 119-525 (526)
25 TIGR02343 chap_CCT_epsi T-comp 100.0 1.8E-65 3.9E-70 541.1 39.2 355 1-414 123-531 (532)
26 PTZ00212 T-complex protein 1 s 100.0 2.7E-65 5.8E-70 540.2 40.0 356 1-416 123-527 (533)
27 TIGR02342 chap_CCT_delta T-com 100.0 3.7E-65 8.1E-70 537.6 39.7 357 1-414 105-516 (517)
28 TIGR02346 chap_CCT_theta T-com 100.0 5.9E-65 1.3E-69 537.0 40.6 364 1-424 114-529 (531)
29 TIGR02345 chap_CCT_eta T-compl 100.0 7.5E-65 1.6E-69 535.9 39.2 358 1-414 113-519 (522)
30 TIGR02341 chap_CCT_beta T-comp 100.0 5.4E-64 1.2E-68 528.4 41.3 357 1-417 112-517 (519)
31 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.1E-64 6.7E-69 526.2 34.9 337 1-413 112-479 (480)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 8.5E-63 1.9E-67 514.3 37.5 340 1-414 104-471 (472)
33 cd00309 chaperonin_type_I_II c 100.0 4.3E-62 9.3E-67 509.2 38.4 337 1-413 104-464 (464)
34 COG0459 GroL Chaperonin GroEL 100.0 3.3E-63 7.2E-68 517.2 24.4 362 1-419 107-518 (524)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.5E-59 5.5E-64 491.0 36.7 357 1-416 85-485 (485)
36 KOG0363 Chaperonin complex com 100.0 2E-55 4.2E-60 420.2 28.1 360 1-420 116-524 (527)
37 KOG0358 Chaperonin complex com 100.0 1.3E-55 2.9E-60 423.1 24.5 356 1-414 122-533 (534)
38 KOG0364 Chaperonin complex com 100.0 7.9E-54 1.7E-58 417.4 22.9 359 1-418 115-524 (527)
39 KOG0360 Chaperonin complex com 100.0 4.8E-51 1E-55 401.3 24.4 366 1-421 115-542 (545)
40 KOG0362 Chaperonin complex com 100.0 2.4E-49 5.2E-54 391.7 30.9 360 1-424 122-530 (537)
41 KOG0359 Chaperonin complex com 100.0 1.7E-49 3.7E-54 386.5 21.5 354 1-414 113-514 (520)
42 KOG0357 Chaperonin complex com 100.0 3.4E-47 7.5E-52 360.6 17.0 242 123-415 144-396 (400)
43 cd03333 chaperonin_like chaper 100.0 1.6E-30 3.4E-35 243.9 20.7 192 32-299 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 100.0 2.3E-29 5E-34 243.2 21.8 197 45-300 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.4 1.2E-12 2.6E-17 145.3 15.1 206 46-310 335-578 (1598)
46 COG0459 GroL Chaperonin GroEL 97.9 1.5E-05 3.3E-10 84.4 6.9 94 127-225 237-330 (524)
47 smart00574 POX domain associat 54.5 54 0.0012 28.6 6.8 58 249-319 69-127 (140)
48 TIGR01101 V_ATP_synt_F vacuola 48.6 74 0.0016 26.9 6.6 69 119-188 44-115 (115)
49 COG4148 ModC ABC-type molybdat 47.1 23 0.00049 35.0 3.7 44 105-148 144-193 (352)
50 PF07526 POX: Associated with 43.1 85 0.0018 27.5 6.4 59 249-320 69-128 (140)
51 TIGR03659 IsdE heme ABC transp 39.6 61 0.0013 31.5 5.6 59 126-189 83-141 (289)
52 PRK13600 putative ribosomal pr 39.2 1.2E+02 0.0026 24.1 6.1 55 125-189 20-74 (84)
53 cd01143 YvrC Periplasmic bindi 34.4 1.1E+02 0.0024 27.2 6.2 58 126-188 52-110 (195)
54 TIGR02345 chap_CCT_eta T-compl 33.1 12 0.00025 40.2 -0.7 61 133-194 246-315 (522)
55 cd01141 TroA_d Periplasmic bin 32.4 1.4E+02 0.0031 26.5 6.5 37 127-167 62-99 (186)
56 PRK13601 putative L7Ae-like ri 31.6 1.6E+02 0.0035 23.2 5.8 53 126-189 16-69 (82)
57 PF01113 DapB_N: Dihydrodipico 31.4 1.4E+02 0.003 25.1 5.8 42 111-154 70-111 (124)
58 TIGR01166 cbiO cobalt transpor 31.2 53 0.0012 29.6 3.5 41 105-145 143-188 (190)
59 PF03102 NeuB: NeuB family; I 31.1 82 0.0018 30.2 4.8 74 120-202 55-128 (241)
60 PRK06683 hypothetical protein; 30.6 1.8E+02 0.0038 22.9 5.8 54 126-190 19-73 (82)
61 cd03213 ABCG_EPDR ABCG transpo 30.2 71 0.0015 29.0 4.1 47 105-151 127-178 (194)
62 KOG1593 Asparaginase [Amino ac 30.0 64 0.0014 31.3 3.7 58 282-349 104-164 (349)
63 cd03232 ABC_PDR_domain2 The pl 29.7 72 0.0016 28.9 4.1 46 105-150 124-174 (192)
64 PF06723 MreB_Mbl: MreB/Mbl pr 26.8 2.1E+02 0.0046 28.7 7.1 84 237-320 186-297 (326)
65 cd03234 ABCG_White The White s 26.3 91 0.002 28.9 4.2 48 105-152 159-211 (226)
66 TIGR03771 anch_rpt_ABC anchore 25.9 82 0.0018 29.3 3.8 43 104-146 128-175 (223)
67 cd03216 ABC_Carb_Monos_I This 25.7 70 0.0015 28.2 3.2 43 104-146 97-144 (163)
68 PRK03379 vitamin B12-transport 25.6 1.5E+02 0.0033 28.3 5.7 58 126-188 64-122 (260)
69 COG1121 ZnuC ABC-type Mn/Zn tr 25.0 93 0.002 30.1 4.0 45 105-149 155-204 (254)
70 PRK13602 putative ribosomal pr 24.6 2.7E+02 0.006 21.7 6.0 54 126-190 19-73 (82)
71 COG4555 NatA ABC-type Na+ tran 24.5 82 0.0018 29.7 3.3 42 104-145 148-194 (245)
72 PRK13538 cytochrome c biogenes 24.5 87 0.0019 28.6 3.7 43 105-147 145-192 (204)
73 PRK13539 cytochrome c biogenes 23.9 92 0.002 28.5 3.7 42 105-146 143-189 (207)
74 TIGR02673 FtsE cell division A 23.8 86 0.0019 28.7 3.5 41 105-145 153-198 (214)
75 TIGR00960 3a0501s02 Type II (G 23.7 91 0.002 28.6 3.7 41 105-145 154-199 (216)
76 cd03262 ABC_HisP_GlnQ_permease 23.5 81 0.0018 28.8 3.3 42 105-146 151-197 (213)
77 cd03218 ABC_YhbG The ABC trans 23.4 97 0.0021 28.8 3.8 41 105-145 149-194 (232)
78 cd01144 BtuF Cobalamin binding 23.2 1.9E+02 0.0041 26.9 5.8 58 126-188 49-107 (245)
79 PF10593 Z1: Z1 domain; Inter 23.1 1.1E+02 0.0024 29.2 4.1 73 113-209 89-161 (239)
80 cd03246 ABCC_Protease_Secretio 22.7 97 0.0021 27.5 3.5 41 105-145 112-157 (173)
81 PRK13543 cytochrome c biogenes 22.6 94 0.002 28.6 3.5 42 105-146 153-199 (214)
82 cd03235 ABC_Metallic_Cations A 22.3 90 0.0019 28.6 3.3 42 105-146 148-194 (213)
83 cd03219 ABC_Mj1267_LivG_branch 22.0 1E+02 0.0022 28.7 3.7 42 105-146 159-205 (236)
84 TIGR01978 sufC FeS assembly AT 21.8 95 0.0021 29.0 3.5 42 105-146 160-206 (243)
85 cd03215 ABC_Carb_Monos_II This 21.8 1.1E+02 0.0024 27.3 3.7 41 105-145 120-165 (182)
86 cd03225 ABC_cobalt_CbiO_domain 21.6 1.1E+02 0.0023 28.0 3.7 41 105-145 150-195 (211)
87 TIGR03740 galliderm_ABC gallid 21.5 97 0.0021 28.7 3.4 41 105-145 140-185 (223)
88 PRK10619 histidine/lysine/argi 21.5 90 0.0019 29.7 3.2 42 105-146 168-214 (257)
89 PRK11614 livF leucine/isoleuci 21.5 1E+02 0.0022 28.8 3.5 41 105-145 153-198 (237)
90 PRK11264 putative amino-acid A 21.5 95 0.0021 29.3 3.4 42 105-146 160-206 (250)
91 cd03226 ABC_cobalt_CbiO_domain 21.3 90 0.002 28.4 3.1 42 105-146 142-188 (205)
92 PRK09580 sufC cysteine desulfu 20.9 98 0.0021 29.1 3.3 41 105-145 161-206 (248)
93 cd03269 ABC_putative_ATPase Th 20.9 91 0.002 28.5 3.0 42 105-146 144-190 (210)
94 PF01497 Peripla_BP_2: Peripla 20.8 3.2E+02 0.0069 25.0 6.8 59 127-189 53-112 (238)
95 PRK09493 glnQ glutamine ABC tr 20.6 1.1E+02 0.0023 28.7 3.6 42 105-146 152-198 (240)
96 cd03268 ABC_BcrA_bacitracin_re 20.6 1.1E+02 0.0023 28.0 3.5 41 105-145 142-187 (208)
97 cd01138 FeuA Periplasmic bindi 20.6 2.8E+02 0.006 25.8 6.4 55 126-188 58-112 (248)
98 PRK15056 manganese/iron transp 20.3 1E+02 0.0023 29.6 3.4 42 105-146 158-204 (272)
99 cd03292 ABC_FtsE_transporter F 20.2 1.1E+02 0.0024 27.9 3.5 41 105-145 152-197 (214)
100 COG1129 MglA ABC-type sugar tr 20.0 1.6E+02 0.0035 31.4 4.9 43 105-147 417-464 (500)
101 PRK10982 galactose/methyl gala 20.0 1.3E+02 0.0028 31.7 4.4 42 106-147 408-454 (491)
No 1
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-88 Score=714.13 Aligned_cols=431 Identities=59% Similarity=0.919 Sum_probs=411.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|++.++++|+++++|+++.+.|.++|.||+++++.+++++++|+..++++|.|.++.+....|+++++
T Consensus 110 i~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v 189 (542)
T PRK00013 110 ANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVV 189 (542)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEE
Confidence 59999999999999999999999999999888999999999988999999999999999988876665555455566999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|.+++++|+..++||+||++|++|++++++.++++++++.|+||||++++|++.|+++|..|+++|+
T Consensus 190 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 190 EGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred EeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+|++.++++|+|||++||+++++++.+++++++++++||+|+.|++.+++|+||++|++++++..|+++|+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 349 (542)
T PRK00013 270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIK 349 (542)
T ss_pred ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||++++++++++|+|||||++|+++|..|+++
T Consensus 350 ~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~- 428 (542)
T PRK00013 350 AQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEAL- 428 (542)
T ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHH
Q 013743 321 TA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA 399 (437)
Q Consensus 321 ~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~ 399 (437)
.+ ++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus 429 ~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (542)
T PRK00013 429 KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAA 508 (542)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHH
Confidence 44 78999999999999999999999999999999999999888778999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhcCCccCCCCCC-CCCCCCCC
Q 013743 400 SVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGM 432 (437)
Q Consensus 400 e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~ 432 (437)
++|++||+||++|..+|+.++.+|. |+||||||
T Consensus 509 ~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~ 542 (542)
T PRK00013 509 SVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGGM 542 (542)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCC
Confidence 9999999999999999888766555 88999987
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-87 Score=707.11 Aligned_cols=432 Identities=63% Similarity=0.968 Sum_probs=413.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|++.++++|+++++|+++.+.|.++|+||+++++.+++++++|+..++++|.+.++.|++++|+++++
T Consensus 110 ihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v 189 (542)
T PRK12849 110 ANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVT 189 (542)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEE
Confidence 59999999999999999999999999999888999999999999999999999999999988888888999999877999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|.++.++|+..++||+||++|++|++++++.++++++.+.|+||||++++|++.|+++|..|+++|.
T Consensus 190 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~ 269 (542)
T PRK12849 190 EGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGG 269 (542)
T ss_pred EeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhcc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+++++++++|+|||.+|||++++++.+..++++++++||+|+.|++++++|+++++|++++++..|+++|+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~ 349 (542)
T PRK12849 270 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIR 349 (542)
T ss_pred ccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||++++++++++|||||||++|+++|..|++++
T Consensus 350 ~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~ 429 (542)
T PRK12849 350 RQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELA 429 (542)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743 321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e 400 (437)
..++++|+++++|++||+.||++||+|||+|+.+++.+|++.| .++|||+.+|+++||++.|||||+.+|.++|+.|++
T Consensus 430 ~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e 508 (542)
T PRK12849 430 GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAAS 508 (542)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHH
Confidence 3378999999999999999999999999999999999999877 579999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhcCCccCCCCCCCCCCCCCCCC
Q 013743 401 VSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGG 434 (437)
Q Consensus 401 ~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~ 434 (437)
+|++||+||++|..+|+...+ |++||||++|+-
T Consensus 509 ~A~~iL~id~iI~~~~~~~~~-~~~~~~~~~~~~ 541 (542)
T PRK12849 509 VAGLLLTTEALVADKPEEEDP-PGGMGGMGGMGH 541 (542)
T ss_pred HHHHHHhHHHHHhcCCccCCC-CCCCCCCCCCCC
Confidence 999999999999998865444 677888888864
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-86 Score=700.86 Aligned_cols=433 Identities=60% Similarity=0.956 Sum_probs=412.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||++|++.++++|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.+..|++..++++++
T Consensus 111 i~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v 190 (545)
T PRK12852 111 MNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIV 190 (545)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEE
Confidence 59999999999999999999999999998777899999999998999999999999999999988888898876667999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|+.|+++|.+|+|+++++.|+..+++|+||++|++|+++++++++++++.+.|+||||++++|+++|+++|..|+++|.
T Consensus 191 ~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~ 270 (545)
T PRK12852 191 EGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGG 270 (545)
T ss_pred EeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+|++.++++|+|||++|||++++++.+.+++++++++||+|+.|++.++++++++++++++.+..|+++|+
T Consensus 271 ~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 350 (545)
T PRK12852 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIK 350 (545)
T ss_pred ceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++++++++++|||||||++|++++..|++++
T Consensus 351 ~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~ 430 (545)
T PRK12852 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRIN 430 (545)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743 321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e 400 (437)
..++.+|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||+.+|+++||++.|||||+.||.++|+.|+|
T Consensus 431 ~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e 510 (545)
T PRK12852 431 NDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAAS 510 (545)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhcCCccCCCCCC-CCCCCCCCC
Q 013743 401 VSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGMG 433 (437)
Q Consensus 401 ~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~~ 433 (437)
+|++||+||++|..+|++...+|. ++|+||+|+
T Consensus 511 ~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~ 544 (545)
T PRK12852 511 VAGLLVTTEAMVAELPKKDAAPAMPAGGGMGGMG 544 (545)
T ss_pred HHHHHHhHHHHhhcCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999988877555444 456677664
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.8e-85 Score=692.46 Aligned_cols=436 Identities=58% Similarity=0.942 Sum_probs=414.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||++|.+.+++.|+++++|+++.+.|.++|++|+++++.+++++++|+..++++|.|.+..+++++|+++++
T Consensus 111 i~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~ 190 (546)
T PRK14104 111 MNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVV 190 (546)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEE
Confidence 59999999999999999999999999998777899999999999999999999999999999988888888887777999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.||||+++++.++.++++|+||++|.+|+++++++++++++.+.|+||||++++|+++|+++|..|++++.
T Consensus 191 ~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~ 270 (546)
T PRK14104 191 EGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGG 270 (546)
T ss_pred EEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+||+.++++|+|||++|||++++++.+..++++++++||+|++|++++++++++++|++++++..|+++|+
T Consensus 271 ~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~ 350 (546)
T PRK14104 271 LKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIK 350 (546)
T ss_pred eeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++++++++++|+|||||++|++++..|+++.
T Consensus 351 ~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~ 430 (546)
T PRK14104 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIK 430 (546)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743 321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e 400 (437)
..++++++++++|++||+.||++||+|||+|+.+++.+|+..|.+++|||+.+|+++||++.|||||+.||.++|+.|++
T Consensus 431 ~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~ 510 (546)
T PRK14104 431 TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAAS 510 (546)
T ss_pred cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999999999987777789999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhcCCccCCCCCCCCCCCCCCCCCCC
Q 013743 401 VSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY 437 (437)
Q Consensus 401 ~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (437)
+|++||+||++|...|++...+| .++.||||++|||
T Consensus 511 ~a~~iL~id~~I~~~~~~~~~~~-~~~~~~~~~~~~~ 546 (546)
T PRK14104 511 VAALLITTEAMVAELPKKGGAGP-AMPPGGGMGGMDF 546 (546)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCC-CCCCCCCCCCCCC
Confidence 99999999999998887765554 4445567777775
No 5
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-85 Score=691.91 Aligned_cols=430 Identities=63% Similarity=0.964 Sum_probs=405.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|++.++++|+++++++++.+.|.++|++|+++++.+++++++|+..++++|.|.+..+....++++++
T Consensus 111 ihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v 190 (544)
T PRK12850 111 MNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVV 190 (544)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEE
Confidence 59999999999999999999999999998888999999999999999999999999999988877776666666777999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|+++.++|+..++||+||++|++|++.+++.+++++++++|+||||++++|+++++++|..|+++|.
T Consensus 191 ~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~ 270 (544)
T PRK12850 191 EGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGG 270 (544)
T ss_pred EeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+|++.++++|+|||++|||++++++.+.+++++++++||+|++|++.+++|+||++|++++++..|+++|+
T Consensus 271 ~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~ 350 (544)
T PRK12850 271 LKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIR 350 (544)
T ss_pred ceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
++++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++++++++++|||||||++|++++..|+++.
T Consensus 351 ~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~ 430 (544)
T PRK12850 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLK 430 (544)
T ss_pred HHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743 321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e 400 (437)
..++++|+++++|++||+.||++||+|||+|+.+++.+|++.| .++|+|+.+|+++||++.|||||+.||.++|+.|++
T Consensus 431 ~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~ 509 (544)
T PRK12850 431 GANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAAS 509 (544)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHH
Confidence 3378999999999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhcCCccCCCCCC-CC-CCCCCC
Q 013743 401 VSSLMTTTEAIVVELPKEEKEAPG-GM-GGMGGM 432 (437)
Q Consensus 401 ~a~~iL~id~iI~~~~~~~~~~~~-~~-~~~~~~ 432 (437)
+|++|||||++|..+|+..|++ + || .|||||
T Consensus 510 ~a~~iL~id~iI~~~~~~~~~~-~~~~~~~~~~~ 542 (544)
T PRK12850 510 IAALLITTEAMVAEAPKKAAAA-AAGPGPGMGGM 542 (544)
T ss_pred HHHHHHhHHHhhccCCCCCCCC-CCCCCCCCCCC
Confidence 9999999999999988764443 3 33 345544
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-84 Score=684.76 Aligned_cols=423 Identities=62% Similarity=0.939 Sum_probs=402.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|++.++++|+++++++++.+.|.++|++|+++++.+++++++|+..++++|.|.+..+....++++++
T Consensus 111 ihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~ 190 (541)
T PRK12851 111 ANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVV 190 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEE
Confidence 59999999999999999999999999998888899999999988999999999999999988866655544445566999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|+++.++|+.+++||+||++|++|++.+++.++++++.++|+||||++++|++.|+++|..|+++|.
T Consensus 191 ~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~ 270 (541)
T PRK12851 191 EGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGG 270 (541)
T ss_pred EEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+|++.++++|+|||++|||++++++.++.++++++++||+|+.|++.+++|+|+++|++++++..|+++|+
T Consensus 271 ~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 350 (541)
T PRK12851 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIR 350 (541)
T ss_pred eeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
++++.+.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++++++++++|||||||++|+++|..|++++
T Consensus 351 ~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~ 430 (541)
T PRK12851 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLE 430 (541)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743 321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e 400 (437)
..++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|||+.+|+++||++.|||||+.||.++|+.|+|
T Consensus 431 ~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e 509 (541)
T PRK12851 431 TANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAAS 509 (541)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999877 479999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhcCCccCCCCCC
Q 013743 401 VSSLMTTTEAIVVELPKEEKEAPG 424 (437)
Q Consensus 401 ~a~~iL~id~iI~~~~~~~~~~~~ 424 (437)
+|++||+||++|..+|+.+|+||-
T Consensus 510 ~A~~iL~id~iI~~~~~~~~~~~~ 533 (541)
T PRK12851 510 VAGLLLTTEAMVAEKPKKEPAPPA 533 (541)
T ss_pred HHHHHHhHHHhhhcCCCCCCCCCC
Confidence 999999999999999887666544
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.1e-83 Score=681.15 Aligned_cols=419 Identities=65% Similarity=0.998 Sum_probs=403.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|.+.++++|+++++|+++.+.|.++|+||+++++.+++++++|+..++++|.|.+++|++++|+++++
T Consensus 122 ihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v 201 (555)
T PTZ00114 122 LNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVV 201 (555)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEE
Confidence 59999999999999999999999999998888999999999999999999999999999998999999999999998999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|+++.++|+..+++|+||++|++|++++++.++++++++.|+||||++++|+++|+++|..|+++|.
T Consensus 202 ~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~ 281 (555)
T PTZ00114 202 EGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGG 281 (555)
T ss_pred EEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccC-cCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI 239 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~-~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l 239 (437)
++|+|||+|++|++++++|+|||++|||+++++. .+..++++++++||+|++|++.+++++++++++++++|+.|+++|
T Consensus 282 ~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l 361 (555)
T PTZ00114 282 LKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELL 361 (555)
T ss_pred eEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 677778899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhh
Q 013743 240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKL 319 (437)
Q Consensus 240 ~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~ 319 (437)
+.+++.+.++|++++|++|++||+++++||+|||+|+.+++|++|+++||++++++++++|||||||++|+++|..|+++
T Consensus 362 ~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~ 441 (555)
T PTZ00114 362 RSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKL 441 (555)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc--c-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHH
Q 013743 320 ST--A-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALV 396 (437)
Q Consensus 320 ~~--~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~ 396 (437)
+. + ++++|+++++|++||+.||++||+|||+|+.+++++|++..++++|||+.+|+++||++.|||||+.||.++|+
T Consensus 442 ~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~ 521 (555)
T PTZ00114 442 EEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALV 521 (555)
T ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHH
Confidence 75 3 68999999999999999999999999999999999998744678999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhhhcCCccC
Q 013743 397 DAASVSSLMTTTEAIVVELPKEE 419 (437)
Q Consensus 397 ~A~e~a~~iL~id~iI~~~~~~~ 419 (437)
.|+++|++||+||++|...|++.
T Consensus 522 ~A~~~A~~iL~id~iI~~~~~~~ 544 (555)
T PTZ00114 522 DAASVASLMLTTEAAIVDLPKEK 544 (555)
T ss_pred HHHHHHHHHHhHHHHHHhCCccc
Confidence 99999999999999999987763
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-83 Score=674.25 Aligned_cols=412 Identities=64% Similarity=0.987 Sum_probs=399.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|.+.++++|+++++|+++.+.|.++|+||+++++.+++++++|+..++++|.|.+++|++++|+++++
T Consensus 108 i~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~ 187 (520)
T cd03344 108 ANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVV 187 (520)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEE
Confidence 59999999999999999999999999999888999999999999999999999999999988888889999999977999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|.+++++|+.+++||+|+++|++|++++++.++++++++.|+||||++++|+++|+++|..|+++|.
T Consensus 188 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~ 267 (520)
T cd03344 188 EGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGG 267 (520)
T ss_pred eeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccC
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+++++++++|+|||++|||++++++.++.++++++++||+|++|++++++++|+++|+++++++.|+++|+
T Consensus 268 ~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~ 347 (520)
T cd03344 268 LKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIR 347 (520)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||++++++++++|+|||||++|+++|.+|++++
T Consensus 348 ~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~ 427 (520)
T cd03344 348 KQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLK 427 (520)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743 321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e 400 (437)
..++++|+++++|++||+.||++||+|||+|+.+++++|++.|+ ++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 428 ~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~ 506 (520)
T cd03344 428 ALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAAS 506 (520)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHH
Confidence 76789999999999999999999999999999999999998886 89999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhh
Q 013743 401 VSSLMTTTEAIVV 413 (437)
Q Consensus 401 ~a~~iL~id~iI~ 413 (437)
+|++||+||.+|.
T Consensus 507 ~a~~iL~id~~i~ 519 (520)
T cd03344 507 VASLLLTTEALVV 519 (520)
T ss_pred HHHHHHhhheEEe
Confidence 9999999999885
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.9e-82 Score=666.81 Aligned_cols=414 Identities=58% Similarity=0.909 Sum_probs=397.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||+.|++.++++|+++++|+++.+.|.++|++|+++++++++++++|+..++++|.|.+..|++.+|+++++
T Consensus 109 ihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v 188 (524)
T TIGR02348 109 ANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVV 188 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEE
Confidence 59999999999999999999999999999888999999999999999999999999999998888888898887877999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.+|+|.++.++|++.++||+||++|++|++++++.++++++++.|+||||++++|+++|+++|..|+++|+
T Consensus 189 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~ 268 (524)
T TIGR02348 189 EGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 268 (524)
T ss_pred EeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|++++.++++|+|||++|||++++.+.+++++++++++||+|+.|++.+++|+|+++|++++++..|++.|+
T Consensus 269 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~ 348 (524)
T TIGR02348 269 LNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIK 348 (524)
T ss_pred cceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++++|+++++|||||||++|+++|..|++ .
T Consensus 349 ~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~ 427 (524)
T TIGR02348 349 AQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-L 427 (524)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHH
Q 013743 321 TA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA 399 (437)
Q Consensus 321 ~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~ 399 (437)
.+ ++++|+++++|++||+.||++||+|||+|+.+++++|++. ..++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus 428 ~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 506 (524)
T TIGR02348 428 KGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAA 506 (524)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHH
Confidence 44 7899999999999999999999999999999999999876 446999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhcCC
Q 013743 400 SVSSLMTTTEAIVVELP 416 (437)
Q Consensus 400 e~a~~iL~id~iI~~~~ 416 (437)
++|++||+||++|...|
T Consensus 507 ~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 507 SIAGLLLTTEAVVADKP 523 (524)
T ss_pred HHHHHHHhHHHHhhcCC
Confidence 99999999999997654
No 10
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.1e-81 Score=667.48 Aligned_cols=419 Identities=47% Similarity=0.780 Sum_probs=400.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||++|.+.+++.|+++++++++ +.|.++|++|+++++.|++|+++|+.+++++|.|.+.+|++++|+++++
T Consensus 166 i~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v 244 (600)
T PLN03167 166 ANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVV 244 (600)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEE
Confidence 599999999999999999999999999975 6799999999999999999999999999998989999999999998999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|++|+++|.||||+++.++|+++++||+||++|++|++++++.++++++.+.|+|+||++++|++++|++|+.|+++|.
T Consensus 245 ~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~ 324 (600)
T PLN03167 245 EGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGS 324 (600)
T ss_pred EEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~ 240 (437)
++|+|||+|+|++.++++|+|||++|||++++++.++.+++++.++||+|++|++.++.++++++-++++.++.|+.+|+
T Consensus 325 ~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~ 404 (600)
T PLN03167 325 LKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIK 404 (600)
T ss_pred ceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877778999999999999999999999999998889999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~ 320 (437)
.+++.+.++|++++|++|+++|+|++++|+|||+|+.+++|++|+++||++++|+++++|+|||||++|++++..|++++
T Consensus 405 ~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~ 484 (600)
T PLN03167 405 NLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIK 484 (600)
T ss_pred hhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999987
Q ss_pred cc-chhHH-HHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHH
Q 013743 321 TA-NFDQK-IGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDA 398 (437)
Q Consensus 321 ~~-~~~~~-~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A 398 (437)
.. ++++| .+++++++||+.||++||+|||+|+.+++.+|+..+++++|||+.+|++.||++.|||||+.||+++|+.|
T Consensus 485 ~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A 564 (600)
T PLN03167 485 DTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHA 564 (600)
T ss_pred hcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHH
Confidence 65 55556 56999999999999999999999999999999866778899999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhhhcCCccCC
Q 013743 399 ASVSSLMTTTEAIVVELPKEEK 420 (437)
Q Consensus 399 ~e~a~~iL~id~iI~~~~~~~~ 420 (437)
+++|++||+||++|..+|..++
T Consensus 565 ~~~A~~iL~iD~iI~~~~~~~~ 586 (600)
T PLN03167 565 ASVAKTFLTSDCVVVEIKEPEP 586 (600)
T ss_pred HHHHHHHHHHHHHhhcCCCCCC
Confidence 9999999999999998765544
No 11
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.6e-81 Score=659.20 Aligned_cols=415 Identities=48% Similarity=0.816 Sum_probs=395.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
+||+.|++||++|.+.+++.|+++++|++|.+.|.+||++|+++++.+++|+++|+..++++|.|.+..|+..++.++++
T Consensus 110 i~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v 189 (529)
T CHL00093 110 ANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEIT 189 (529)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEE
Confidence 59999999999999999999999999999888999999999999999999999999999988888877777667777999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCH-HHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHccccc
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRA 159 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~-~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~ 159 (437)
+|++|+++|.||+|++++++|+.+++||+||++|++|... .+++++++++.+.|+|+||++++|+++++++|..|+.+|
T Consensus 190 ~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g 269 (529)
T CHL00093 190 EGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRG 269 (529)
T ss_pred eeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999987 789999999999999999999999999999998898888
Q ss_pred CceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHH
Q 013743 160 GIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI 239 (437)
Q Consensus 160 ~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l 239 (437)
+++|+|||+|+++++++++|+|||++|||++++++.+.+++++++++||+|++|++.+++++||+ .++++.+..||+++
T Consensus 270 ~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~ 348 (529)
T CHL00093 270 IVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQL 348 (529)
T ss_pred cceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHH
Confidence 88999999999999999999999999999999988888899999999999999999999999998 56789999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhh
Q 013743 240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKL 319 (437)
Q Consensus 240 ~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~ 319 (437)
+++++.+.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++++|+++++|+|||||++|+++|..|+++
T Consensus 349 ~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~ 428 (529)
T CHL00093 349 RKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTW 428 (529)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc-c-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHH
Q 013743 320 ST-A-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVD 397 (437)
Q Consensus 320 ~~-~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~ 397 (437)
+. . ++++|+++++|++||+.||++||+|||+|+.+++++++.. +.++|||+.+|+++||++.|||||+.||.++|+.
T Consensus 429 ~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~ 507 (529)
T CHL00093 429 AKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQN 507 (529)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHH
Confidence 75 4 7899999999999999999999999999999999999865 4589999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhhhcCCc
Q 013743 398 AASVSSLMTTTEAIVVELPK 417 (437)
Q Consensus 398 A~e~a~~iL~id~iI~~~~~ 417 (437)
|+|+|++|||||++|...|+
T Consensus 508 A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 508 AASIASMILTTECIIVDKKE 527 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998764
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-71 Score=552.01 Aligned_cols=418 Identities=63% Similarity=0.976 Sum_probs=405.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV 80 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~ 80 (437)
.+|..|.+|+..+.+.+++.|+++|++|...+++.+||.+|.++|...++++.+|++++|++|.|.++.|.++.|+++++
T Consensus 124 ~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~ 203 (550)
T KOG0356|consen 124 ANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVI 203 (550)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743 81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG 160 (437)
Q Consensus 81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~ 160 (437)
+|+.|++||++|||+++++...+++++|++|+.+.+|++++++.|.||...+...||||++++|+.++|.+|+.|+.++.
T Consensus 204 eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~g 283 (550)
T KOG0356|consen 204 EGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGG 283 (550)
T ss_pred hcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcC-CccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHH
Q 013743 161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG-MDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQI 239 (437)
Q Consensus 161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~-~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l 239 (437)
++|||||+|+||+.++..+.|++.+||++++..+.+ +.+++.+.++||.|.++.+.+++++++.+.++.++++.||+++
T Consensus 284 lqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqi 363 (550)
T KOG0356|consen 284 LQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQI 363 (550)
T ss_pred eeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999877 8889999999999999999999999999989999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhh
Q 013743 240 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKL 319 (437)
Q Consensus 240 ~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~ 319 (437)
+..++.+.++|+++++++|+++|+|++++|.|+|.|+.|++|++.+++|||+++++|+++|+|||||+++++|+..|.++
T Consensus 364 k~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~l 443 (550)
T KOG0356|consen 364 KEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDEL 443 (550)
T ss_pred HHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHH
Q 013743 320 STA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDA 398 (437)
Q Consensus 320 ~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A 398 (437)
... ++.++.|++++.+||..|..+|+.|||.|+..++.+++. ..+|||..+|+++||++.||+||+.|.+.+|..|
T Consensus 444 k~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a 520 (550)
T KOG0356|consen 444 KATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDA 520 (550)
T ss_pred ccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhh
Confidence 764 688999999999999999999999999999999999983 4899999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhhhcCCccCCC
Q 013743 399 ASVSSLMTTTEAIVVELPKEEKE 421 (437)
Q Consensus 399 ~e~a~~iL~id~iI~~~~~~~~~ 421 (437)
..+|+++++++.+|...|+++++
T Consensus 521 ~~vasll~tte~vvteipk~~~~ 543 (550)
T KOG0356|consen 521 AGVASLLTTTEAVVTEIPKEEAG 543 (550)
T ss_pred hHHHHHHhhheeEEEeccccccC
Confidence 99999999999999999988833
No 13
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-68 Score=511.55 Aligned_cols=377 Identities=17% Similarity=0.270 Sum_probs=343.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--C----HHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCC-----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--T----SEEIAQVGTISANG------EREIGELIAKAMEKVGKEG----- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~----~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g----- 63 (437)
+||..|+++|++|...+++.|+++++.++ + ++.|+++|.|++++ +++|++++++|+..++.+.
T Consensus 116 v~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mI 195 (543)
T KOG0361|consen 116 VHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMI 195 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhc
Confidence 59999999999999999999999998887 2 56799999999876 5899999999999998542
Q ss_pred cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC-------------CCHHH--------
Q 013743 64 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-------- 122 (437)
Q Consensus 64 ~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i-------------~~~~~-------- 122 (437)
-|+|++||+++|| .+++|+.|.+.|.+..| +++|+.+.||||++++.++ .++++
T Consensus 196 GIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAE 270 (543)
T KOG0361|consen 196 GIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAE 270 (543)
T ss_pred ceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHH
Confidence 3899999999999 89999999999988776 7899999999999999863 34444
Q ss_pred ---HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 123 ---VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 123 ---l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
+.+.|++|..+|.|+|+..-.|.|.|.+||+.+++ .|| |+++.+||.|...+||+++.++ .
T Consensus 271 W~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----FCA------GRV~~eDl~Rv~~acGGsi~tt-----~ 334 (543)
T KOG0361|consen 271 WNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----FCA------GRVPEEDLNRVMQACGGSIQTT-----V 334 (543)
T ss_pred HHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----eec------CcCCHHHHHHHHHhcCcchhhh-----h
Confidence 35688999999999999999999999999999987 454 7888999999999999999999 8
Q ss_pred ccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
.++.++.||.|..++ ++.++|.+|+||+.. ++||+++||+-+
T Consensus 335 ~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a-----------------------------------ktcTliLRGgae 379 (543)
T KOG0361|consen 335 SDIKEEVLGTCALFEERQVGGERYNLFEGCPKA-----------------------------------KTCTLILRGGAE 379 (543)
T ss_pred hhcchhhcchhhhHHHHhhcchhhhhhcCCCcc-----------------------------------ceeEEEEeccHH
Confidence 999999999999999 578999999999964 489999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
++++|.+|++|||++++|.|+++. ||+|||++||++|++|++|+.+ .+++|+-+.+|++|||.||++||+|||+|..+
T Consensus 380 qfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ 459 (543)
T KOG0361|consen 380 QFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATN 459 (543)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHH
Confidence 999999999999999999999999 9999999999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCccCCCCCC-CCCCCC
Q 013743 355 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMG 430 (437)
Q Consensus 355 v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~ 430 (437)
++++|+..| ..|+|+|..++.+.|+++.+||||..||++++.+|+|+||+||.+|+.|.+++...++|.+ |+|-++
T Consensus 460 ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~a~rgrg~ 539 (543)
T KOG0361|consen 460 ILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSAAGRGRGR 539 (543)
T ss_pred HHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCccccCCCC
Confidence 999999888 5799999999999999999999999999999999999999999999999997766665433 345555
Q ss_pred CCC
Q 013743 431 GMG 433 (437)
Q Consensus 431 ~~~ 433 (437)
|||
T Consensus 540 g~p 542 (543)
T KOG0361|consen 540 GRP 542 (543)
T ss_pred CCC
Confidence 555
No 14
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.7e-67 Score=553.60 Aligned_cols=354 Identities=21% Similarity=0.375 Sum_probs=324.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHhcc---CCc----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANGE-------REIGELIAKAMEKVGK---EGV---- 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~~-------~~ls~lv~~A~~~v~~---~g~---- 64 (437)
+||+.|++||+.|++.++++|++++++++ +.+.|+++|+|+++++ +.|++++++|+.++++ +|.
T Consensus 112 i~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~ 191 (519)
T TIGR02339 112 IHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVD 191 (519)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccC
Confidence 59999999999999999999999999986 4678999999999875 7899999999999985 453
Q ss_pred -----EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEeccc-------------CCCHHHHHHH
Q 013743 65 -----ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRV 126 (437)
Q Consensus 65 -----I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------i~~~~~l~~~ 126 (437)
|.+++|++++|+ ++++|++|+++|.+|. |+..++||+|++++++ |++++++.++
T Consensus 192 ~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~ 263 (519)
T TIGR02339 192 LDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHPG-------MPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKF 263 (519)
T ss_pred HHHeEEEEccCcChhcc-eeEeeEEEecCCCCCC-------CccccCCCcEEEEeccccccccccceEEEECCHHHHHHH
Confidence 667999999987 9999999999999874 6888999999999998 6778777666
Q ss_pred HH-----------HHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCc
Q 013743 127 LE-----------LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (437)
Q Consensus 127 le-----------~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~ 195 (437)
++ ++++.|+||||++++|++.++++|.+++ +++|+ ++++++|+|||++|||+++++
T Consensus 264 l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v~-----~v~~~~L~rIa~~tGa~ii~~-- 330 (519)
T TIGR02339 264 LDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDIEKLARATGAKIVSS-- 330 (519)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCC------CEEEe-----cCCHHHHHHHHHHhCCEEeCc--
Confidence 55 8999999999999999999999998877 46665 456899999999999999999
Q ss_pred CCccccCCcCCCcceeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEec
Q 013743 196 GMDLEKVNLDMLGTCKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG 272 (437)
Q Consensus 196 ~~~~~~~~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~ 272 (437)
++++++++||+|++|++.+ ++|++|++|+++ ..+||+||
T Consensus 331 ---~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lr 372 (519)
T TIGR02339 331 ---IKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP-----------------------------------KAVTILLR 372 (519)
T ss_pred ---hhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEE
Confidence 8999999999999999764 899999988754 37899999
Q ss_pred CCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCC
Q 013743 273 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGV 350 (437)
Q Consensus 273 G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~ 350 (437)
|+|+.+++|.+|+++||++++++++++| ||||||++|+++|..|++++.. ++++++++++|++||+.||++|++|||+
T Consensus 373 G~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~ 452 (519)
T TIGR02339 373 GGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGL 452 (519)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999 9999999999999999998766 7899999999999999999999999999
Q ss_pred CHHHHHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhh
Q 013743 351 EGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 413 (437)
Q Consensus 351 d~~~v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~ 413 (437)
|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 453 d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 453 DPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred CHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 9999999998765 35799999999999999999999999999999999999999999999985
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.7e-67 Score=553.06 Aligned_cols=355 Identities=21% Similarity=0.394 Sum_probs=325.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccCC---------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANGE------REIGELIAKAMEKVGKEG--------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~g--------- 63 (437)
+||+.|++||++|.+.+++.|++++++++ +.+.|.++|+|+++++ +.|++++++|+.++++++
T Consensus 111 i~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~ 190 (517)
T cd03343 111 IHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLD 190 (517)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHH
Confidence 59999999999999999999999999996 7889999999999975 899999999999997753
Q ss_pred --cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEeccc-------------CCCHHHHHH---
Q 013743 64 --VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVR--- 125 (437)
Q Consensus 64 --~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------i~~~~~l~~--- 125 (437)
.|.+++|++++|+ ++++|++|+++|.||+| +..++||+|++++++ +++++++.+
T Consensus 191 ~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~ 262 (517)
T cd03343 191 NIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLE 262 (517)
T ss_pred HeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHH
Confidence 2556999999987 99999999999999874 677899999999998 467777655
Q ss_pred --------HHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCC
Q 013743 126 --------VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (437)
Q Consensus 126 --------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~ 197 (437)
+++++++.|+||||++++|++.|+++|.+++ +++|+ ++++++|+|||++|||+++++
T Consensus 263 ~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~g------I~~v~-----~v~~~~l~~Ia~~tGa~ii~~---- 327 (517)
T cd03343 263 QEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDMEKLARATGAKIVTN---- 327 (517)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------cEEEE-----eCCHHHHHHHHHHhCCEEecc----
Confidence 4558999999999999999999999998877 46776 446899999999999999999
Q ss_pred ccccCCcCCCcceeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 013743 198 DLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGA 274 (437)
Q Consensus 198 ~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~ 274 (437)
++++++++||+|++|++. +++|++|++|++++ .+||+|||+
T Consensus 328 -~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~ 371 (517)
T cd03343 328 -IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPK-----------------------------------AVTILLRGG 371 (517)
T ss_pred -hhhCChhhCCccceEEEEEECCeEEEEEEcCCCCc-----------------------------------eEEEEEECC
Confidence 999999999999999975 78999999887643 689999999
Q ss_pred chhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCH
Q 013743 275 SEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEG 352 (437)
Q Consensus 275 t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~ 352 (437)
|+.+++|++|+++||++++|+++++| ||||||++|+++|..|++++.. ++++|+++++|++||+.||++|++|||+|+
T Consensus 372 t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~ 451 (517)
T cd03343 372 TEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDP 451 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999 9999999999999999998766 789999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 353 AVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 353 ~~v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|+.
T Consensus 452 ~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 452 IDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 99999998766 357999999999999999999999999999999999999999999999965
No 16
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-67 Score=550.49 Aligned_cols=359 Identities=21% Similarity=0.320 Sum_probs=322.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccC---CCHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCCc-------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMI---STSEEIAQVGTISANG------EREIGELIAKAMEKVGKEGV------- 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v---~~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g~------- 64 (437)
+||+.|++||+.|.+.++++|+++++++ .+.+.|.++|+|++++ ++.|++++++|+..++++|.
T Consensus 112 ihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I 191 (531)
T TIGR02347 112 IHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMV 191 (531)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHe
Confidence 5999999999999999999999999764 4788999999999976 68999999999999987652
Q ss_pred -EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCC-------------HHH--------
Q 013743 65 -ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA-------- 122 (437)
Q Consensus 65 -I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~-------------~~~-------- 122 (437)
|.+.+|++..|+ ++++|++|+++|.+|+| +.+++||+|++++++|.. +++
T Consensus 192 ~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~~-------~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E 263 (531)
T TIGR02347 192 EIMEMKHKSATDT-TLIRGLVLDHGARHPDM-------PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAE 263 (531)
T ss_pred EEEEecCCCcccc-EEEeeEEEecCcCCCCC-------ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHH
Confidence 335788998887 99999999999999874 778999999999998642 222
Q ss_pred ---HHHHHHHHHhcC-------CC---EEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCe
Q 013743 123 ---VVRVLELALKRQ-------RP---LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (437)
Q Consensus 123 ---l~~~le~i~~~~-------~~---lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ 189 (437)
+...+++|++.+ ++ ||+|+++|++.++++|.+++ |+++++ +++++|+|||++|||+
T Consensus 264 ~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~------I~~i~r-----v~~~~le~ia~~tGa~ 332 (531)
T TIGR02347 264 RKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEG------IMALRR-----AKRRNMERLTLACGGE 332 (531)
T ss_pred HHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCC------ceEEcc-----CCHHHHHHHHHHhCCE
Confidence 234567777755 14 99999999999999999988 578864 4688999999999999
Q ss_pred EeccCcCCccccCCcCCCcceeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCe
Q 013743 190 LITEELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGV 266 (437)
Q Consensus 190 ii~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~ 266 (437)
++++ +++++++++|+|++| ++++++|++|++|+++ ++
T Consensus 333 ~i~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~ 372 (531)
T TIGR02347 333 ALNS-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-----------------------------------KS 372 (531)
T ss_pred Eecc-----cccCCccccccceEEEEEEECCeEEEEEEcCCCC-----------------------------------Ce
Confidence 9999 999999999999999 5678899999998764 37
Q ss_pred EEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHH
Q 013743 267 AVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTI 344 (437)
Q Consensus 267 ~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L 344 (437)
|||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++|
T Consensus 373 ~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~L 452 (531)
T TIGR02347 373 CTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTL 452 (531)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999998766 7899999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhhCC---CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCcc
Q 013743 345 AANAGVEGAVVVGKLLEQDN---TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 418 (437)
Q Consensus 345 ~~NaG~d~~~v~~~l~~~~~---~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~ 418 (437)
|+|||+|+.+++.+|++.|+ .++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||+||+.+|+.
T Consensus 453 a~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 453 AENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred HHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 99999999999999988774 479999999999999999999999999999999999999999999999887653
No 17
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-67 Score=550.73 Aligned_cols=350 Identities=21% Similarity=0.308 Sum_probs=319.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC---CHHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccCC--------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS---TSEEIAQVGTISANGE------REIGELIAKAMEKVGKEG-------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~---~~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~g-------- 63 (437)
+||+.|++||+.|.+.++++|++++++++ +.+.|.+||++|++++ +.|++++++|+..+++++
T Consensus 108 i~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I 187 (484)
T cd03342 108 VHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMV 187 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHe
Confidence 59999999999999999999999999997 7889999999999985 899999999999998865
Q ss_pred cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCCHHH-HHHHHHHHHhcCCCEEEEec
Q 013743 64 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTA-VVRVLELALKRQRPLLIVAE 142 (437)
Q Consensus 64 ~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~-l~~~le~i~~~~~~lvi~~~ 142 (437)
.|.+++|+++.|+ ++++|++|+++|.+|+| +..++||+|++++++|..... +... .-.+||||++
T Consensus 188 ~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~~~~~~~~~------~~~~lvi~~~ 253 (484)
T cd03342 188 EIMQMQHKSDSDT-KLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEYEKTEVNSG------FFYSVVINQK 253 (484)
T ss_pred EEEEecCCChhhc-eEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCCCccccCcE------EEEEEEEeCC
Confidence 2678899998887 99999999999999874 778899999999999876543 2111 1146999999
Q ss_pred CCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEE---Eecce
Q 013743 143 DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVT---ISKDD 219 (437)
Q Consensus 143 ~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~ 219 (437)
+|++.++++|.+|+ |+||++ +++++|+|||++|||+++++ ++++++++||+|++|+ +++++
T Consensus 254 ~I~~~al~~l~~~~------I~av~~-----~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~ 317 (484)
T cd03342 254 GIDPPSLDMLAKEG------ILALRR-----AKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEK 317 (484)
T ss_pred CccHHHHHHHHHCC------CeEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeE
Confidence 99999999999997 689875 46889999999999999999 9999999999999994 67789
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHc
Q 013743 220 TVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE 299 (437)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~ 299 (437)
|+||++|+++ +.+||+|||+|+.+++|.||+++||++++++++++
T Consensus 318 ~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~ 362 (484)
T cd03342 318 YTFIEGVKNP-----------------------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIED 362 (484)
T ss_pred EEEEECCCCC-----------------------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998764 47999999999999999999999999999999999
Q ss_pred C-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhC---CCceeEeCCCC
Q 013743 300 G-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKG 374 (437)
Q Consensus 300 g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~---~~~~Gid~~~g 374 (437)
| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+++.+|++.| +.++|||+.+|
T Consensus 363 ~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 442 (484)
T cd03342 363 KCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTG 442 (484)
T ss_pred CcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCC
Confidence 9 9999999999999999998776 78999999999999999999999999999999999998776 46799999999
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcC
Q 013743 375 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 415 (437)
Q Consensus 375 ~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~ 415 (437)
+++||++.|||||+.+|.++|+.|+|+|++|||||+||+.+
T Consensus 443 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 443 EPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999999999999999999763
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-66 Score=550.95 Aligned_cols=362 Identities=19% Similarity=0.284 Sum_probs=322.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHh-ccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhcc---CC-----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKS-RARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGK---EG----- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~---~g----- 63 (437)
+||+.|++||+.|.+.++++|++ ++++++ +.+.|.++|+|++++ .+.|++++++|+..++. +|
T Consensus 104 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~ 183 (527)
T cd03335 104 IHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYP 183 (527)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccC
Confidence 59999999999999999999996 899997 788899999999884 37899999999999952 23
Q ss_pred ----cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCC-------------HHH----
Q 013743 64 ----VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA---- 122 (437)
Q Consensus 64 ----~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~-------------~~~---- 122 (437)
.|.+.+|++++|+ ++++|++|++++.+|. |+..++||+|++++++|.. +++
T Consensus 184 ~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~ 255 (527)
T cd03335 184 IKAVNILKAHGKSAKES-YLVNGYALNCTRASQG-------MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKI 255 (527)
T ss_pred HHHeEEEEecCcChhhc-ceeeeEEEecccCCCC-------CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHH
Confidence 2558899999987 9999999999998874 6888999999999998743 222
Q ss_pred -------HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCc
Q 013743 123 -------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (437)
Q Consensus 123 -------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~ 195 (437)
+.++++++++.|++|||++++|++.++++|.+++ |++++ ++++++|+|||++|||+++++..
T Consensus 256 ~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~lerIa~~tGa~ii~~~~ 324 (527)
T cd03335 256 RQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RVKKEDLRRIAKATGATLVSTLA 324 (527)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHhCCEEecChh
Confidence 2367788999999999999999999999999987 57776 45689999999999999999833
Q ss_pred CC-ccccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEe
Q 013743 196 GM-DLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 271 (437)
Q Consensus 196 ~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v 271 (437)
++ ..++++++++|+|+.|+ +++++|++|++|+++ ++|||+|
T Consensus 325 ~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~-----------------------------------~~~TIll 369 (527)
T cd03335 325 NLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR-----------------------------------SSASIIL 369 (527)
T ss_pred hcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEE
Confidence 32 12345566899999999 678899999988763 5899999
Q ss_pred cCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcC
Q 013743 272 GGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAG 349 (437)
Q Consensus 272 ~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG 349 (437)
||+|+.+++|.+|+++||++++++++++| +|||||++|++++..|++++.. ++++++++++|++||+.||++||+|||
T Consensus 370 rG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG 449 (527)
T cd03335 370 RGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAA 449 (527)
T ss_pred eCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999 9999999999999999998776 789999999999999999999999999
Q ss_pred CCHHHHHHHHHhhC-----------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCC
Q 013743 350 VEGAVVVGKLLEQD-----------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 416 (437)
Q Consensus 350 ~d~~~v~~~l~~~~-----------~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~ 416 (437)
+|+.+++.+|++.| ++++|+|+.+|++.||++.|||||+.+|.++|++|+|+|++|||||++|...|
T Consensus 450 ~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 450 KDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred CCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 99999999998765 24689999999999999999999999999999999999999999999997754
No 19
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-66 Score=547.31 Aligned_cols=358 Identities=20% Similarity=0.287 Sum_probs=324.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCC---------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGKEG--------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g--------- 63 (437)
+||+.|++||+.|++.++++|++++++++ +.+.|.++|+|++++ ++.|++++++|+..+++++
T Consensus 112 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~ 191 (525)
T TIGR02344 112 IHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDI 191 (525)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccCh
Confidence 59999999999999999999999999987 677899999999876 4789999999999998653
Q ss_pred ----cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCC-------------HHHHHHH
Q 013743 64 ----VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTAVVRV 126 (437)
Q Consensus 64 ----~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~-------------~~~l~~~ 126 (437)
.|++.+|++++|+ ++++|++|++++.++ +|+..++||+|++++++|.. ++++.++
T Consensus 192 ~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~ 263 (525)
T TIGR02344 192 KRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRI 263 (525)
T ss_pred hhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHH
Confidence 3667889999997 999999999998775 37889999999999998743 4665544
Q ss_pred -----------HHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCc
Q 013743 127 -----------LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (437)
Q Consensus 127 -----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~ 195 (437)
++++.+.|++|||++++|++.++++|.+++ |+|++ ++++++|+|||++|||+++++
T Consensus 264 l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~~-- 330 (525)
T TIGR02344 264 LQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN------ISAIR-----RVRKTDNNRIARACGATIVNR-- 330 (525)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------ceEEe-----cCCHHHHHHHHHHhCCeEecc--
Confidence 448889999999999999999999999877 67775 567999999999999999999
Q ss_pred CCccccCCcCCCcc-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEe
Q 013743 196 GMDLEKVNLDMLGT-CKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 271 (437)
Q Consensus 196 ~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v 271 (437)
+++++++++|+ |+.|++ ++++|++|++|+++ .+|||+|
T Consensus 331 ---l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-----------------------------------~~~TIlL 372 (525)
T TIGR02344 331 ---PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-----------------------------------KACTILL 372 (525)
T ss_pred ---hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEE
Confidence 99999999999 999997 46899999998764 3799999
Q ss_pred cCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcC
Q 013743 272 GGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAG 349 (437)
Q Consensus 272 ~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG 349 (437)
||+|+.+++|+||+++||+++++++++++ +|||||++|++||.+|++++.. ++++|+++++|++||+.||++||+|||
T Consensus 373 rG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG 452 (525)
T TIGR02344 373 RGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCG 452 (525)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999997 9999999999999999998766 789999999999999999999999999
Q ss_pred CCHHHHHHHHHhhC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCc
Q 013743 350 VEGAVVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 417 (437)
Q Consensus 350 ~d~~~v~~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~ 417 (437)
+|+.+++.+|++.| +.++|+|+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|...|+
T Consensus 453 ~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 453 VNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred CCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence 99999999998876 356999999999999999999999999999999999999999999999988663
No 20
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-66 Score=544.64 Aligned_cols=359 Identities=18% Similarity=0.278 Sum_probs=326.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCC------HHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCC-----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST------SEEIAQVGTISANG------EREIGELIAKAMEKVGKEG----- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~------~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g----- 63 (437)
+||+.|++||+.|++.++++|+++++++++ .+.|+++|+|++++ +++|++++++|+..+++++
T Consensus 112 i~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I 191 (522)
T cd03340 112 VHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMI 191 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHh
Confidence 599999999999999999999999998864 56799999999884 5899999999999998765
Q ss_pred cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC-------------CCHHH--------
Q 013743 64 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-------- 122 (437)
Q Consensus 64 ~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i-------------~~~~~-------- 122 (437)
.|.+.+|+++.|+ ++++|++|+++|.+|+|. +|+..++||+|+++++++ +++++
T Consensus 192 ~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E 266 (522)
T cd03340 192 GIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAE 266 (522)
T ss_pred eEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHH
Confidence 3677899999998 899999999999999873 467889999999999984 44444
Q ss_pred ---HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 123 ---VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 123 ---l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
+.+.++++++.|+++|+++++|+|.++++|.+++ |++++ ++++++|+|||++|||+++++ +
T Consensus 267 ~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~l~rIa~~tGa~ii~~-----l 330 (522)
T cd03340 267 WKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEEDLKRVAQATGGSIQTT-----V 330 (522)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCCEEeec-----c
Confidence 4567788999999999999999999999999998 46665 446899999999999999999 9
Q ss_pred ccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
++++++++|+|+.|+ +++++|++|++|..+ ..+||++||+|+
T Consensus 331 ~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TIllrG~t~ 375 (522)
T cd03340 331 SNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-----------------------------------KTCTIILRGGAE 375 (522)
T ss_pred ccCCccccccceEEEEEEECCEEEEEEECCCCC-----------------------------------ceEEEEEECCCH
Confidence 999999999999999 567899999998754 379999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
.+++|.+|+++||++++++++++| ||||||++|++++..|++++.+ ++++++++++|++||+.||++|++|||+|+.+
T Consensus 376 ~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~ 455 (522)
T cd03340 376 QFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATD 455 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999998 9999999999999999998766 78999999999999999999999999999999
Q ss_pred HHHHHHhhC---C-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcC
Q 013743 355 VVGKLLEQD---N-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 415 (437)
Q Consensus 355 v~~~l~~~~---~-~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~ 415 (437)
++.+|++.| + .++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+
T Consensus 456 ~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 456 ILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred HHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 999999876 2 569999999999999999999999999999999999999999999999774
No 21
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.8e-66 Score=544.93 Aligned_cols=364 Identities=18% Similarity=0.284 Sum_probs=322.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHh-ccccCC--CHHHHHHHHHHhcC------CchhHHHHHHHHHHHhcc---CC-----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKS-RARMIS--TSEEIAQVGTISAN------GEREIGELIAKAMEKVGK---EG----- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~~~L~~va~ts~~------~~~~ls~lv~~A~~~v~~---~g----- 63 (437)
+||+.|++||+.|++.+++.|++ .++|++ +.+.|.++|+|+++ +++.|++++++|+..++. +|
T Consensus 108 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~ 187 (536)
T TIGR02340 108 VHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYP 187 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccc
Confidence 59999999999999999999997 488987 77889999999998 457899999999999962 33
Q ss_pred ----cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCCH-------------HH----
Q 013743 64 ----VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-------------TA---- 122 (437)
Q Consensus 64 ----~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~-------------~~---- 122 (437)
.|.+++|++++|+ ++++|++|+++|.+|. |+..++||+|++++++|... ++
T Consensus 188 ~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~~-------m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~ 259 (536)
T TIGR02340 188 IKAVNILKAHGGSARES-YLVKGYALNCTRASQQ-------MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGI 259 (536)
T ss_pred hHHeEEEEecCCCcccc-EEEEEEEEecccCCCC-------CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHH
Confidence 2567899999776 9999999999998873 78899999999999987432 22
Q ss_pred -------HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCc
Q 013743 123 -------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (437)
Q Consensus 123 -------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~ 195 (437)
+.+.++++++.|++|||++++|++.++++|.+++ +++++ ++++++|+|||++|||+++++..
T Consensus 260 ~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv~~~~LerIa~~tGa~ii~~~~ 328 (536)
T TIGR02340 260 RQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RCKKEDLKRIAKATGGTLVSTLA 328 (536)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cCCHHHHHHHHHHhCCEEecchh
Confidence 2356778889999999999999999999999988 57776 44689999999999999999843
Q ss_pred CC-ccccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEe
Q 013743 196 GM-DLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 271 (437)
Q Consensus 196 ~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v 271 (437)
++ ..+++++++||+|++|+ +++++|++|++|+++ .++||+|
T Consensus 329 ~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TIli 373 (536)
T TIGR02340 329 DLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-----------------------------------KSASIIL 373 (536)
T ss_pred hcCccccccccccccCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEE
Confidence 33 22445677799999999 678899999988764 3799999
Q ss_pred cCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcC
Q 013743 272 GGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAG 349 (437)
Q Consensus 272 ~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG 349 (437)
||+|+.+++|++|+++||++++++++++| +|||||++|++++..|++++.. ++++++++++|++||+.||++||+|||
T Consensus 374 rG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG 453 (536)
T TIGR02340 374 RGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAA 453 (536)
T ss_pred eCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999 9999999999999999988765 789999999999999999999999999
Q ss_pred CCHHHHHHHHHhhC-----------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCcc
Q 013743 350 VEGAVVVGKLLEQD-----------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 418 (437)
Q Consensus 350 ~d~~~v~~~l~~~~-----------~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~ 418 (437)
+|+.+++.+|++.| +.++|||+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|...|++
T Consensus 454 ~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 454 LDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred CCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 99999999998765 2369999999999999999999999999999999999999999999999887643
No 22
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8e-66 Score=543.25 Aligned_cols=357 Identities=18% Similarity=0.279 Sum_probs=324.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCCc--------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGKEGV-------- 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g~-------- 64 (437)
+||+.|++||+.|.+.++++|++++++++ +.+.|.++|+||+++ ++.|++++++|+.++++++.
T Consensus 104 i~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~ 183 (515)
T cd03338 104 IHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKD 183 (515)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHH
Confidence 59999999999999999999999999996 788999999999984 47899999999999998763
Q ss_pred --EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC-------------CCH---------
Q 013743 65 --ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNL--------- 120 (437)
Q Consensus 65 --I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i-------------~~~--------- 120 (437)
|.+++|++++|+ ++++|++|+++|.||++ ||..++||+|+++++++ +++
T Consensus 184 i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~ 256 (515)
T cd03338 184 IRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILRE 256 (515)
T ss_pred eEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHH
Confidence 788899999998 99999999999999753 46778999999988864 233
Q ss_pred --HHHHHHHHHHHhcCCCEEEEecCC-----cHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEecc
Q 013743 121 --TAVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (437)
Q Consensus 121 --~~l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~ 193 (437)
+++.++++++++.|+|||||+++| ++.++++|.+++ |+||+ ++++++|+|||++|||+++++
T Consensus 257 E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~------I~av~-----~~~~~~LerIa~~tGa~ii~s 325 (515)
T cd03338 257 ERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVVK-----DIEREEIEFICKTIGCKPVAS 325 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCC------ceEEe-----cCCHHHHHHHHHHHCCEEecc
Confidence 335678899999999999999998 899999998766 68887 557899999999999999999
Q ss_pred CcCCccccCCcCCCcceeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEE
Q 013743 194 ELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLK 270 (437)
Q Consensus 194 ~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~ 270 (437)
+++++++++|+|+.|++. ++++++|.+|.+. +++|||+
T Consensus 326 -----l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~----------------------------------~~~~TIl 366 (515)
T cd03338 326 -----IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNP----------------------------------GKTVTIL 366 (515)
T ss_pred -----cccCCHhhCCCCceEEEEEECCeEEEEEEecCCC----------------------------------CceEEEE
Confidence 999999999999999974 5688899887641 3589999
Q ss_pred ecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHc
Q 013743 271 IGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANA 348 (437)
Q Consensus 271 v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~Na 348 (437)
|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++|++||
T Consensus 367 lrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~Na 446 (515)
T cd03338 367 VRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENA 446 (515)
T ss_pred EeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999 9999999999999999998766 78999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 349 GVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 349 G~d~~~v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
|+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||+||+.
T Consensus 447 G~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 447 GLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred CCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 999999999998876 457999999999999999999999999999999999999999999999863
No 23
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-65 Score=540.60 Aligned_cols=357 Identities=24% Similarity=0.335 Sum_probs=323.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC-----CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccC----C-c
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS-----TSEEIAQVGTISANG------EREIGELIAKAMEKVGKE----G-V 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~----g-~ 64 (437)
+||+.|++||+.|.+.++++|++++++++ +.+.|+++|+|++++ ++.|++++++|+..++.. . .
T Consensus 111 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~ 190 (517)
T cd03336 111 IHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQ 190 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCcccee
Confidence 59999999999999999999999999984 246899999998876 478999999999999642 1 4
Q ss_pred EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCC--------------CHHHH-------
Q 013743 65 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NLTAV------- 123 (437)
Q Consensus 65 I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~--------------~~~~l------- 123 (437)
|.+++|++++|+ ++++|+++++++.++ |+..++||+|++++++|. +++++
T Consensus 191 i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E 261 (517)
T cd03336 191 IIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAE 261 (517)
T ss_pred EEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHH
Confidence 778899999998 999999999987543 588899999999999764 55554
Q ss_pred ----HHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 124 ----VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 124 ----~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
.+.+++|++.|++++++++.|++.++++|.+++ |+||++|+ +++|+|||++|||+++++ +
T Consensus 262 ~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~------I~av~~v~-----~~~L~rIa~~tGa~ii~~-----l 325 (517)
T cd03336 262 KEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG------IMAIEHAD-----FDGVERLALVTGGEIAST-----F 325 (517)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHhCCEEecc-----c
Confidence 235678999999999999999999999999988 68998774 678999999999999999 9
Q ss_pred ccCCcCCCcceeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
++++++++|+|+.|+. +++++++|++|+++ +.|||+|||+|+
T Consensus 326 ~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~ 370 (517)
T cd03336 326 DHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG-----------------------------------EACTIVLRGASQ 370 (517)
T ss_pred CCCCcccccccceEEEEEECCeEEEEEEccCCC-----------------------------------ceEEEEEeCCCH
Confidence 9999999999999995 46899999988753 489999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
.+++|.+|+++||++++++++++| +|||||++|+++|..|++++.+ ++++|+++++|++||+.||++||+|||+|+.+
T Consensus 371 ~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~ 450 (517)
T cd03336 371 QILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAE 450 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999 9999999999999999998776 78999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCc
Q 013743 355 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 417 (437)
Q Consensus 355 v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~ 417 (437)
++.+|+..| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+|+
T Consensus 451 ~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 451 LVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred HHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 999998876 467999999999999999999999999999999999999999999999998764
No 24
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.2e-66 Score=544.37 Aligned_cols=353 Identities=20% Similarity=0.314 Sum_probs=320.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC----CHHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccC-C------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS----TSEEIAQVGTISANGE------REIGELIAKAMEKVGKE-G------ 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~-g------ 63 (437)
+||+.|++||+.|++.++++|++++++++ +.+.|.++|+|+++++ +.|++++++|+..+.+. +
T Consensus 119 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~ 198 (526)
T cd03339 119 IHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFE 198 (526)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchH
Confidence 59999999999999999999999999885 5678999999999863 68999999999988541 1
Q ss_pred --cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEeccc-------------CCCHHH------
Q 013743 64 --VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTA------ 122 (437)
Q Consensus 64 --~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------i~~~~~------ 122 (437)
.|.+.+|++++|+ ++++|++|+++|.||+| +..++||||++++++ ++++++
T Consensus 199 ~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~ 270 (526)
T cd03339 199 LIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQE 270 (526)
T ss_pred HeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHH
Confidence 3788999999998 99999999999999875 556789999998875 345555
Q ss_pred -----HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCC
Q 013743 123 -----VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (437)
Q Consensus 123 -----l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~ 197 (437)
+.++++++++.|+||||++++|++.|+++|.+|+ +.||+++ ++++|+|||++|||+++++
T Consensus 271 ~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v-----~~~~LerIa~~tGa~ii~~---- 335 (526)
T cd03339 271 YEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV-----GGVEIELIAIATGGRIVPR---- 335 (526)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC-----CHHHHHHHHHHhCCEEecc----
Confidence 5677899999999999999999999999999998 4688764 5788999999999999999
Q ss_pred ccccCCcCCCcceeEEEEe-----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEec
Q 013743 198 DLEKVNLDMLGTCKKVTIS-----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG 272 (437)
Q Consensus 198 ~~~~~~~~~lG~~~~v~i~-----~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~ 272 (437)
+++++++++|+|+.|+.. +++++||++|+++ +.+||+||
T Consensus 336 -l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-----------------------------------~~~TIllr 379 (526)
T cd03339 336 -FEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-----------------------------------KAVTIFIR 379 (526)
T ss_pred -hhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC-----------------------------------CEEEEEEE
Confidence 999999999999999842 3688999998764 47999999
Q ss_pred CCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCC
Q 013743 273 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGV 350 (437)
Q Consensus 273 G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~ 350 (437)
|+|+.+++|.+|+++||++++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++|++|||+
T Consensus 380 G~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~ 459 (526)
T cd03339 380 GGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGL 459 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999 9999999999999999998766 7889999999999999999999999999
Q ss_pred CHHHHHHHHHhhC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhh
Q 013743 351 EGAVVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIV 412 (437)
Q Consensus 351 d~~~v~~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI 412 (437)
|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|
T Consensus 460 d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 460 NPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred CHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceec
Confidence 9999999998766 3469999999999999999999999999999999999999999999987
No 25
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-65 Score=541.08 Aligned_cols=355 Identities=19% Similarity=0.305 Sum_probs=320.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC----CHHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccC--C-----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS----TSEEIAQVGTISANGE------REIGELIAKAMEKVGKE--G----- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~--g----- 63 (437)
+||+.|++||+.|++.++++|++++++++ +.+.|.++|+|+++++ +.|++++++|+..+.+. +
T Consensus 123 ihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~ 202 (532)
T TIGR02343 123 IHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFD 202 (532)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHH
Confidence 59999999999999999999999999875 3678999999999863 67999999999988541 1
Q ss_pred --cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEeccc-------------CCCHHHH-----
Q 013743 64 --VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV----- 123 (437)
Q Consensus 64 --~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------i~~~~~l----- 123 (437)
.|.+.+|++++|+ ++++|++|+++|.||+| +..+++|+|++++++ +++++++
T Consensus 203 ~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~m-------~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~ 274 (532)
T TIGR02343 203 LIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQM-------PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQK 274 (532)
T ss_pred HeeEEEecCCCcccc-eeEeeEEEecCcCCCCC-------CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHH
Confidence 3788999999998 99999999999999874 667789999999875 3556655
Q ss_pred ------HHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCC
Q 013743 124 ------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM 197 (437)
Q Consensus 124 ------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~ 197 (437)
.++++++++.|+|||||+++|++.++++|.+|+ +.+|+++ ++++|+|||++|||+++++
T Consensus 275 ~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~-----~~~~l~~Ia~~tGa~~i~~---- 339 (532)
T TIGR02343 275 YEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWV-----GGHELELIAIATGGRIVPR---- 339 (532)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcC-----CHHHHHHHHHHhCCEEecc----
Confidence 678899999999999999999999999999998 4678754 4788999999999999999
Q ss_pred ccccCCcCCCcceeEEEEe---c--ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEec
Q 013743 198 DLEKVNLDMLGTCKKVTIS---K--DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG 272 (437)
Q Consensus 198 ~~~~~~~~~lG~~~~v~i~---~--~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~ 272 (437)
++++++++||+|++|+.. . +++++|++|+++ .++||+||
T Consensus 340 -l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-----------------------------------~~~TIllr 383 (532)
T TIGR02343 340 -FEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-----------------------------------KAVTIFIR 383 (532)
T ss_pred -cccCCHhHCcccceEEEEEecCCcceEEEEECCCCC-----------------------------------CEEEEEEE
Confidence 999999999999999943 2 578999998864 37999999
Q ss_pred CCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCC
Q 013743 273 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGV 350 (437)
Q Consensus 273 G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~ 350 (437)
|+|+.+++|.||+++||+++++++++++ +|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+
T Consensus 384 G~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~ 463 (532)
T TIGR02343 384 GGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGL 463 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999997 9999999999999999998766 7889999999999999999999999999
Q ss_pred CHHHHHHHHHhhC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 351 EGAVVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 351 d~~~v~~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
|+.+++.+|++.| +.++|+|+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|.+
T Consensus 464 d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 464 DPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999998765 356999999999999999999999999999999999999999999999954
No 26
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.7e-65 Score=540.21 Aligned_cols=356 Identities=22% Similarity=0.315 Sum_probs=323.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCC-----HHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccC----C-c
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST-----SEEIAQVGTISANGE------REIGELIAKAMEKVGKE----G-V 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~----g-~ 64 (437)
+||+.|++||+.|++.++++|+++++++++ .+.|.++|+|+++++ +.|++++++|+..+.+. . .
T Consensus 123 i~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~ 202 (533)
T PTZ00212 123 IHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQ 202 (533)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceE
Confidence 599999999999999999999999999863 568999999998763 78999999999988542 1 4
Q ss_pred EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC--------------CCHHHH-------
Q 013743 65 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI--------------SNLTAV------- 123 (437)
Q Consensus 65 I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i--------------~~~~~l------- 123 (437)
|.+++|++++|+ ++++|+++++++.++ |+..++||+|++++++| ++++++
T Consensus 203 i~ki~Ggsi~ds-~lv~G~v~~~~~~~~--------~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E 273 (533)
T PTZ00212 203 IIKKPGGTLRDS-YLEDGFILEKKIGVG--------QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAE 273 (533)
T ss_pred EEEecCcCcccc-EEEEeEEEecccCCC--------CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHH
Confidence 788999999998 999999999987543 68889999999999986 555554
Q ss_pred ----HHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 124 ----VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 124 ----~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
.+.++.|++.|+++|+++++|++.++++|.+++ |+||+++ ++++++|||++|||+++++ +
T Consensus 274 ~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~------I~avr~v-----~~~~l~rIa~~tGa~iis~-----l 337 (533)
T PTZ00212 274 KEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG------IMAIEHA-----DFDGMERLAAALGAEIVST-----F 337 (533)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------CEEEecC-----CHHHHHHHHHHhCCEEeec-----C
Confidence 234678899999999999999999999999998 6888743 5789999999999999999 9
Q ss_pred ccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
+++++++||+|+.|+ +++++|++|++|.. +++|||+|||+|+
T Consensus 338 ~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~ 382 (533)
T PTZ00212 338 DTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-----------------------------------GEACTIVLRGAST 382 (533)
T ss_pred CCCCHHHccCCceEEEEEECCeEEEEEEccCC-----------------------------------CCEEEEEEECCCh
Confidence 999999999999999 67789999998764 3589999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
.+++|.||+++|||+++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++|++|||+|+.+
T Consensus 383 ~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~ 462 (533)
T PTZ00212 383 HILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAE 462 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999 9999999999999999998776 78999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCC
Q 013743 355 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 416 (437)
Q Consensus 355 v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~ 416 (437)
++.+|+..| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 463 vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 463 LVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred HHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 999998766 46799999999999999999999999999999999999999999999998864
No 27
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-65 Score=537.59 Aligned_cols=357 Identities=20% Similarity=0.302 Sum_probs=320.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccC---C------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANGE------REIGELIAKAMEKVGKE---G------ 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~---g------ 63 (437)
+||+.|++||+.|++.++++|+++++|++ +.+.|.++|+||++++ +.|++++++|+..++++ +
T Consensus 105 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~ 184 (517)
T TIGR02342 105 IHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLND 184 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHH
Confidence 59999999999999999999999999987 7889999999999863 57899999999999762 3
Q ss_pred -cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCC-------------CH---------
Q 013743 64 -VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NL--------- 120 (437)
Q Consensus 64 -~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~-------------~~--------- 120 (437)
.|.+..|+++.|+ ++++|++|+++|.++ .+||..++||+|++++++|. ++
T Consensus 185 i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~ 257 (517)
T TIGR02342 185 IKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKE 257 (517)
T ss_pred eeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHH
Confidence 3567789998888 999999999999874 13678889999999998752 22
Q ss_pred --HHHHHHHHHHHhcCCCEEEEecCC-----cHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEecc
Q 013743 121 --TAVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (437)
Q Consensus 121 --~~l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~ 193 (437)
+++.++++++++.|+|||||+++| ++.++++|.+++ |+||+ ++++++|+|||++|||+++++
T Consensus 258 E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~~ 326 (517)
T TIGR02342 258 ERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMK------IMVVK-----DIEREEVEFICKTIGCKPIAS 326 (517)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCC------ceEEe-----cCCHHHHHHHHHHHCCEEEcc
Confidence 235678889999999999999998 899999998876 68887 457899999999999999999
Q ss_pred CcCCccccCCcCCCcceeEEE-E--ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEE
Q 013743 194 ELGMDLEKVNLDMLGTCKKVT-I--SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLK 270 (437)
Q Consensus 194 ~~~~~~~~~~~~~lG~~~~v~-i--~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~ 270 (437)
+++++++++|+|+.|+ + ++..++++.+|.++ ++++||+
T Consensus 327 -----~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~----------------------------------~~~~tIl 367 (517)
T TIGR02342 327 -----IDHFTADKLGSAELVEEVTTDGGKIIKITGIQNA----------------------------------GKTVTVL 367 (517)
T ss_pred -----hhhcCcccCcCCceEEEEEECCeEEEEEEccCCC----------------------------------CceEEEE
Confidence 9999999999999999 3 35677788887652 4589999
Q ss_pred ecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHc
Q 013743 271 IGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANA 348 (437)
Q Consensus 271 v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~Na 348 (437)
|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|..|++++.+ ++++|+++++|++||+.||++|++||
T Consensus 368 lrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~Na 447 (517)
T TIGR02342 368 LRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENA 447 (517)
T ss_pred EeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999996 9999999999999999998766 78999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 349 GVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 349 G~d~~~v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
|+|+.+++.+|++.| +.++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|+.
T Consensus 448 G~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 448 GLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred CCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 999999999998876 467999999999999999999999999999999999999999999999875
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.9e-65 Score=537.03 Aligned_cols=364 Identities=18% Similarity=0.269 Sum_probs=324.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccc-cCC---CHHHHHHHHHHhcCC-----chhHHHHHHHHHHHhccCC--------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRAR-MIS---TSEEIAQVGTISANG-----EREIGELIAKAMEKVGKEG-------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~-~v~---~~~~L~~va~ts~~~-----~~~ls~lv~~A~~~v~~~g-------- 63 (437)
+||+.|++||+.|.+.+++.|+++++ +++ +.+.|.++|+|++++ ++.|++++++|+.++++++
T Consensus 114 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~ 193 (531)
T TIGR02346 114 LHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDN 193 (531)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhH
Confidence 59999999999999999999999986 774 467899999999854 7899999999999998754
Q ss_pred -cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC-------------CCHH--------
Q 013743 64 -VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLT-------- 121 (437)
Q Consensus 64 -~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i-------------~~~~-------- 121 (437)
.|.+.+|++++|+ ++++|++|++++. + +++.++||+|+++++++ ++++
T Consensus 194 I~i~ki~G~s~~ds-~li~Gi~~~~~~~-~--------~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (531)
T TIGR02346 194 IRVSKIMGGSISNS-EVLKGMVFNREAE-G--------SVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKG 263 (531)
T ss_pred eeEEEecCCChhhc-eeEeeeEEeccCC-C--------CceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHH
Confidence 2566799999987 9999999999842 1 46788999999999874 2333
Q ss_pred ---HHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCc
Q 013743 122 ---AVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (437)
Q Consensus 122 ---~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~ 198 (437)
.+.++++++++.|+||||++++|+|.++++|.+++ |+||++|+ ..+|+|||.+|||+++++
T Consensus 264 e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~------I~av~~~~-----~~~l~~Ia~~tGa~ii~~----- 327 (531)
T TIGR02346 264 EENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN------IMVLKIPS-----KFELRRLCKTVGATPLAR----- 327 (531)
T ss_pred HHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHHCCEEecc-----
Confidence 24678899999999999999999999999998777 78998875 569999999999999999
Q ss_pred cccCCcCCCcceeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCc
Q 013743 199 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 275 (437)
Q Consensus 199 ~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t 275 (437)
++++++++||+|++|++. ++++.+|.+|.. .++++||+|||+|
T Consensus 328 l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~----------------------------------~~~~~tI~lrG~t 373 (531)
T TIGR02346 328 LGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG----------------------------------DSKISTIILRGST 373 (531)
T ss_pred cccCCHhHccccceEEEEEECCEEEEEEEccCC----------------------------------CCCeEEEEEECCC
Confidence 899999999999999964 578889987652 2468999999999
Q ss_pred hhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHH
Q 013743 276 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 353 (437)
Q Consensus 276 ~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 353 (437)
+.+++|++|+++||++++++++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++|++|||+|+.
T Consensus 374 ~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~ 453 (531)
T TIGR02346 374 KNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPN 453 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999 9999999999999999998766 7899999999999999999999999999999
Q ss_pred HHHHHHHhhC---CCceeEeCCCCc--cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCccCCCCCC
Q 013743 354 VVVGKLLEQD---NTDLGYDAAKGE--YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG 424 (437)
Q Consensus 354 ~v~~~l~~~~---~~~~Gid~~~g~--i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~~~~~~~ 424 (437)
+++.+|++.| +.++|||+.+|+ ++||++.|||||+.||+++|+.|+|+|++|||||++|...|...+.+|+
T Consensus 454 ~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~ 529 (531)
T TIGR02346 454 EVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ 529 (531)
T ss_pred HHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence 9999998775 457999999999 6999999999999999999999999999999999999988766666544
No 29
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.5e-65 Score=535.88 Aligned_cols=358 Identities=17% Similarity=0.267 Sum_probs=324.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC-----CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCC------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS-----TSEEIAQVGTISANG------EREIGELIAKAMEKVGKEG------ 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g------ 63 (437)
+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+|++++ +++|++++++|+.++++++
T Consensus 113 i~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I 192 (522)
T TIGR02345 113 VHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLI 192 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHh
Confidence 59999999999999999999999999997 457899999999883 5899999999999998653
Q ss_pred cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCC-------------CHHH--------
Q 013743 64 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-------- 122 (437)
Q Consensus 64 ~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~-------------~~~~-------- 122 (437)
.|.+.+|++++|+ ++++|++|+++|.+|+|. +|+..++||+|++++++|. ++++
T Consensus 193 ~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e 267 (522)
T TIGR02345 193 GVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAE 267 (522)
T ss_pred eEEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHH
Confidence 4677899999998 899999999999999874 4788899999999999863 3333
Q ss_pred ---HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 123 ---VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 123 ---l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
+.+.++++.+.|+++|+|+++|++.++++|.+++ |.+++ ++.++++++++++|||+++++ +
T Consensus 268 ~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~------I~~~~-----~v~~~dl~ria~~tga~ii~~-----~ 331 (522)
T TIGR02345 268 WAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHN------IFCAG-----RVSDEDLKRVVKACGGSIQST-----T 331 (522)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCC------cEEEe-----cCCHHHHHHHHHHhCCeEEcc-----h
Confidence 2445677888999999999999999999999988 46665 446889999999999999999 9
Q ss_pred ccCCcCCCcceeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
+++++++||+|+.|+. +++++++|++|+++ .+|||+|||+|+
T Consensus 332 ~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-----------------------------------~~~TI~lrG~t~ 376 (522)
T TIGR02345 332 SDLEADVLGTCALFEERQIGSERYNYFTGCPHA-----------------------------------KTCTIILRGGAE 376 (522)
T ss_pred hhCChhhccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------ceEEEEEECCCH
Confidence 9999999999999996 35789999988654 379999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
.+++|.+|+++||+++++++++++ +|||||++|++++..|++++.+ ++++++++++|++||+.||++||+|||+|+.+
T Consensus 377 ~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~ 456 (522)
T TIGR02345 377 QFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIE 456 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999986 9999999999999999998766 78999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 355 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 355 v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
++.+|++.| +.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.
T Consensus 457 vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (522)
T TIGR02345 457 ILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN 519 (522)
T ss_pred HHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 999998876 346999999999999999999999999999999999999999999999977
No 30
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.4e-64 Score=528.39 Aligned_cols=357 Identities=22% Similarity=0.327 Sum_probs=320.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCC-----HHHHHHHHHHhcCCc------hhHHHHHHHHHHHhccCC-----c
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIST-----SEEIAQVGTISANGE------REIGELIAKAMEKVGKEG-----V 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~g-----~ 64 (437)
+||+.|++||+.|++.++++|+++++++++ .+.|+++|+|+++++ +.|++++++|+..+.... .
T Consensus 112 ihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~ 191 (519)
T TIGR02341 112 IHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQ 191 (519)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheE
Confidence 599999999999999999999999999852 468999999998863 679999999999884421 3
Q ss_pred EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCC--------------HHHH-------
Q 013743 65 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN--------------LTAV------- 123 (437)
Q Consensus 65 I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~--------------~~~l------- 123 (437)
|.+++|++++|+ ++++|+++++.+.++ |+..++||+|++++++|.. ++++
T Consensus 192 i~k~~G~s~~~s-~l~~G~v~~~~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e 262 (519)
T TIGR02341 192 IIKKLGGSLNDS-YLDEGFLLEKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAE 262 (519)
T ss_pred EEEccCCCcccc-eEEeeEEEeccCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHH
Confidence 566789999998 999999999987542 5778999999999998642 3333
Q ss_pred ----HHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 124 ----VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 124 ----~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
.++++.|++.|++++++++.|++.++++|.+++ |++|++++ +.+|+|||++|||+++++ +
T Consensus 263 ~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~ 326 (519)
T TIGR02341 263 KEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG------VMAIEHAD-----FEGIERLALVTGGEIVST-----F 326 (519)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHhCCEEecc-----c
Confidence 234678899999999999999999999999887 68998774 679999999999999999 8
Q ss_pred ccCCcCCCcceeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
++++++++|+|+.|+. +++++++|.+|+++ ++|||+|||+|+
T Consensus 327 ~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TIllrG~t~ 371 (519)
T TIGR02341 327 DHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG-----------------------------------EACTIVLRGATQ 371 (519)
T ss_pred ccCCccccccCceEEEEEECCEEEEEEEcCCCC-----------------------------------CEEEEEEeCCCH
Confidence 9999999999999985 46899999988753 489999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
.+++|.+|+++||+++++++++++ +|||||++|+++|..|+++++. ++++|+++++|++||+.||++||+|||+|+.+
T Consensus 372 ~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~ 451 (519)
T TIGR02341 372 QILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAE 451 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999997 9999999999999999998766 78999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCc
Q 013743 355 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 417 (437)
Q Consensus 355 v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~ 417 (437)
++.+|+..| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+|+
T Consensus 452 ~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 452 LVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred HHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 999998876 456999999999999999999999999999999999999999999999999874
No 31
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-64 Score=526.17 Aligned_cols=337 Identities=19% Similarity=0.307 Sum_probs=308.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccC--C-------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGKE--G------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~--g------- 63 (437)
+||+.|++||+.|.+.++++|++++++++ +.+.|.++|+|++++ ++.|++++++|+..++++ +
T Consensus 112 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~ 191 (480)
T cd03337 112 IHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDI 191 (480)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCCh
Confidence 59999999999999999999999999997 788999999999985 368999999999999764 2
Q ss_pred ----cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEE
Q 013743 64 ----VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 139 (437)
Q Consensus 64 ----~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi 139 (437)
.|++++|+++.|+ ++++|++|++++.|+ +|+..++||+|++++++|.. |||
T Consensus 192 ~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~-----------------lvi 246 (480)
T cd03337 192 KRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLEY-----------------LVI 246 (480)
T ss_pred hhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcce-----------------EEE
Confidence 2567889999997 999999999999886 37889999999999998775 999
Q ss_pred EecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcc-eeEEEE---
Q 013743 140 VAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGT-CKKVTI--- 215 (437)
Q Consensus 140 ~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~v~i--- 215 (437)
++++|++.++++|.+++ |++|++ +++++|+|||++|||+++++ ++++++++||+ |+.++.
T Consensus 247 ~~k~I~d~al~~L~~~~------I~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~ 310 (480)
T cd03337 247 TEKGVSDLAQHYLVKAG------ITALRR-----VRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKI 310 (480)
T ss_pred eCCCccHHHHHHHHHCC------cEEEEe-----CCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEe
Confidence 99999999999999997 688874 46899999999999999999 89999999999 555553
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHH
Q 013743 216 SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 295 (437)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~ 295 (437)
++++++||++|+++ +.+||+|||+|+.+++|.+|+++||++++++
T Consensus 311 ~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 311 GDEYFTFITECKDP-----------------------------------KACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred CCeEEEEEEcCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999988764 4899999999999999999999999999999
Q ss_pred HHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhC----CCceeE
Q 013743 296 AVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD----NTDLGY 369 (437)
Q Consensus 296 al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~----~~~~Gi 369 (437)
+++++ +|||||++|+++|.+|++++.+ ++++|+++++|++||+.||++||+|||+|+.+++.+|++.| +.++|+
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 435 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGI 435 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECe
Confidence 99997 9999999999999999998776 78999999999999999999999999999999999999876 356999
Q ss_pred eCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhh
Q 013743 370 DAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 413 (437)
Q Consensus 370 d~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~ 413 (437)
|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 436 d~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 436 DGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred eccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999999999999999999984
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.5e-63 Score=514.33 Aligned_cols=340 Identities=20% Similarity=0.287 Sum_probs=308.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcccc-CC---CHHHHHHHHHHhcCC-----chhHHHHHHHHHHHhccC--C------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARM-IS---TSEEIAQVGTISANG-----EREIGELIAKAMEKVGKE--G------ 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~-v~---~~~~L~~va~ts~~~-----~~~ls~lv~~A~~~v~~~--g------ 63 (437)
+||+.|++||+.|.+.++++|++++++ ++ +.+.+.++++|++++ +++|++++++|+..++++ |
T Consensus 104 i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~ 183 (472)
T cd03341 104 LHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDN 183 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhH
Confidence 599999999999999999999999875 53 566799999999754 578999999999999875 4
Q ss_pred -cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEec
Q 013743 64 -VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAE 142 (437)
Q Consensus 64 -~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~ 142 (437)
.|.+.+|++++|+ ++++|++|++.+. .+++.++||+|++++++|.. |++|||+++
T Consensus 184 i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~ 239 (472)
T cd03341 184 IRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI--------------GVNVIVAGG 239 (472)
T ss_pred eEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC--------------CCeEEEECC
Confidence 3677899999998 9999999987542 24578999999999999876 899999999
Q ss_pred CCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEec---ce
Q 013743 143 DVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK---DD 219 (437)
Q Consensus 143 ~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~---~~ 219 (437)
+|++.++++|.+++ |+||++++ +++|+|||++|||+++++ +++++++++|+|++|++.+ ++
T Consensus 240 ~I~d~al~~l~~~~------I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~ 303 (472)
T cd03341 240 SVGDLALHYCNKYG------IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTK 303 (472)
T ss_pred CCCHHHHHHHHHCC------eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCee
Confidence 99999999998776 78998875 789999999999999999 8889999999999999864 89
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHc
Q 013743 220 TVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE 299 (437)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~ 299 (437)
|++|.+|++. ++++||+|||+|+.+++|+||+++||++++++++++
T Consensus 304 ~~~~~~~~~~----------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~ 349 (472)
T cd03341 304 VVVFRQNKED----------------------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKD 349 (472)
T ss_pred EEEEEccCCC----------------------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987641 358999999999999999999999999999999999
Q ss_pred C-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhC---CCceeEeCCCC
Q 013743 300 G-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKG 374 (437)
Q Consensus 300 g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~---~~~~Gid~~~g 374 (437)
| +|||||++|++++..|++++.. ++++++++++|++||+.||++|++|||+|+.+++.+|+..| +.++|||+.+|
T Consensus 350 ~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g 429 (472)
T cd03341 350 GRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESG 429 (472)
T ss_pred CCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCC
Confidence 9 9999999999999999998765 78999999999999999999999999999999999998766 56799999999
Q ss_pred --ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 375 --EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 375 --~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
++.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 430 ~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 430 DEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred CCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999999999999999864
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.3e-62 Score=509.24 Aligned_cols=337 Identities=36% Similarity=0.555 Sum_probs=310.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHhcC------CchhHHHHHHHHHHHhcc------CCc--
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARM--ISTSEEIAQVGTISAN------GEREIGELIAKAMEKVGK------EGV-- 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~--v~~~~~L~~va~ts~~------~~~~ls~lv~~A~~~v~~------~g~-- 64 (437)
+||+.|++||+.|++.++++|++++++ +.+.+.|+++|+|+++ +++.+++++++|+..+++ .+.
T Consensus 104 i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~ 183 (464)
T cd00309 104 IHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIR 183 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEE
Confidence 599999999999999999999999999 5588899999999998 578899999999999987 343
Q ss_pred EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCC
Q 013743 65 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV 144 (437)
Q Consensus 65 I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i 144 (437)
|.+.+|+++.|+ ++++|++|+++|.+|+| +..++||+|++++++|.. |||++++|
T Consensus 184 i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I 238 (464)
T cd00309 184 VEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLEY-----------------VVIAEKGI 238 (464)
T ss_pred EEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcce-----------------EEecCCCc
Confidence 667899999998 99999999999999874 778999999999999887 88888999
Q ss_pred cHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEe---cceEE
Q 013743 145 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTV 221 (437)
Q Consensus 145 ~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~ 221 (437)
++.++++|.+++ |++|++ +++++|+|||++||++++++ +++++++++|+|+.|++. +++++
T Consensus 239 ~~~al~~L~~~~------I~~v~~-----~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~ 302 (464)
T cd00309 239 DDEALHYLAKLG------IMAVRR-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYT 302 (464)
T ss_pred CHHHHHHHHHCC------eEEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEE
Confidence 999999999877 788875 46899999999999999999 899999999999999975 46788
Q ss_pred EEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcC-
Q 013743 222 ILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG- 300 (437)
Q Consensus 222 ~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g- 300 (437)
+|.+|.++ +.|||+|||+|+.+++|++|+++||+++++++++++
T Consensus 303 ~~~~~~~~-----------------------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~ 347 (464)
T cd00309 303 FIEGCKGG-----------------------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGG 347 (464)
T ss_pred EEEecCCC-----------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88876642 489999999999999999999999999999999997
Q ss_pred ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCC---CceeEeCCCCcc
Q 013743 301 IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDN---TDLGYDAAKGEY 376 (437)
Q Consensus 301 vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~---~~~Gid~~~g~i 376 (437)
+|||||++|+++|..|++++.. ++++++++++|++||+.||++|++|||+|+.+++.+|++.|. .++|+|+.+|++
T Consensus 348 ~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~ 427 (464)
T cd00309 348 IVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEI 427 (464)
T ss_pred cccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcE
Confidence 9999999999999999998876 789999999999999999999999999999999999998773 478999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhh
Q 013743 377 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 413 (437)
Q Consensus 377 ~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~ 413 (437)
.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 428 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 428 VDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred eehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999999999999999999999999999999984
No 34
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-63 Score=517.25 Aligned_cols=362 Identities=38% Similarity=0.582 Sum_probs=312.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHH-HHHHHHHHhc-----CCchhHHHHHHHHHHHhcc-----CCc-EEEE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSE-EIAQVGTISA-----NGEREIGELIAKAMEKVGK-----EGV-ITIH 68 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~-~L~~va~ts~-----~~~~~ls~lv~~A~~~v~~-----~g~-I~~~ 68 (437)
+||+.|++||++|.+.++++|+++++++++.+ .. +++.+++ ++++++++++++|+.+++. ++. +.++
T Consensus 107 i~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~ 185 (524)
T COG0459 107 IHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKE 185 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEe
Confidence 69999999999999999999999999998443 22 5555544 4468999999999999999 675 4456
Q ss_pred eCCCcccceeeEeceEEeecccCcccccccccCc-eeecCceEEEecccCCC-------------HHH------------
Q 013743 69 DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQK-CELEDPLILVHEKKISN-------------LTA------------ 122 (437)
Q Consensus 69 ~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~-~~l~~p~Ill~d~~i~~-------------~~~------------ 122 (437)
.|++..|+ ++++|++|+++|.+||| |+ +.++||+||++|++|+. .++
T Consensus 186 ~gg~~~e~-~vveG~~~dkg~~s~~~------~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~ 258 (524)
T COG0459 186 SGGSETEL-EVVEGMVFDKGYLSPYF------MPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEA 258 (524)
T ss_pred cCCCccce-EEEeeEEecCCccCCCC------CCccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHH
Confidence 66666655 99999999999999988 66 78999999999998643 222
Q ss_pred HHHHHHHHHhcCCC-EEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhH-HHHHHHhCCeEeccCcCCccc
Q 013743 123 VVRVLELALKRQRP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANM-QDLAVLTGGDLITEELGMDLE 200 (437)
Q Consensus 123 l~~~le~i~~~~~~-lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~l-e~la~~tG~~ii~~~~~~~~~ 200 (437)
+...++.+.+.|.| ++|++++|+|.++++|.+++ |.+++ ++.++++ ++|+.+|||++++. .+
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt~~-----~v~~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILTGR-----RVKKEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ceecc-----eecchhhHHHHHHccCceEEee-----cc
Confidence 23455678888999 88999999999999998887 45554 4467888 79999999999999 89
Q ss_pred cCCcCCCcc--eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCc
Q 013743 201 KVNLDMLGT--CKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 275 (437)
Q Consensus 201 ~~~~~~lG~--~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t 275 (437)
+.++..+|. |++|+.. ++++++|.+ |.+. .+++|||+|||+|
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~--------------------------------~~~~-~~~~~tI~vrgat 369 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQE--------------------------------RKAK-AGGVATILVRGAT 369 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhh--------------------------------hhhc-CCCeEEEEECCcc
Confidence 999999999 8888853 445555554 4444 5789999999999
Q ss_pred hhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-ch-hHHHHHHHHHHHhhHHHHHHHHHcCCCH
Q 013743 276 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NF-DQKIGVQIIQNALKTPVHTIAANAGVEG 352 (437)
Q Consensus 276 ~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~-~~~~~~~~~a~AL~~ip~~L~~NaG~d~ 352 (437)
+.+++|++|+++|||+++++++++| +|||||++|+++++.|+++..+ ++ ++|+++++|++||+.||++|++|||+|+
T Consensus 370 e~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~ 449 (524)
T COG0459 370 EVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDP 449 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999 9999999999999999998333 44 9999999999999999999999999999
Q ss_pred HHHHHHHHhhCC-CceeEeCCCCcc-ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCccC
Q 013743 353 AVVVGKLLEQDN-TDLGYDAAKGEY-VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEE 419 (437)
Q Consensus 353 ~~v~~~l~~~~~-~~~Gid~~~g~i-~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~~ 419 (437)
.+++.+|++.|+ +++|||+.+|++ .||++.|||||+.||+++|+.|+|+|+++||+|++|...|+.+
T Consensus 450 ~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 450 IEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 999999999886 569999999999 7899999999999999999999999999999999999988764
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.5e-59 Score=490.99 Aligned_cols=357 Identities=27% Similarity=0.479 Sum_probs=324.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCH-HHHHHHHHHhcCCc------hhHHHHHHHHHHHhccC-----CcEEEE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTS-EEIAQVGTISANGE------REIGELIAKAMEKVGKE-----GVITIH 68 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~~-----g~I~~~ 68 (437)
+||+.|++||+.|.+.+++.|+++++++++. +.|+++|+|+++++ +.|++++++|++.+..+ -.|.+.
T Consensus 85 i~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i 164 (485)
T PF00118_consen 85 IHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKI 164 (485)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEE
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhh
Confidence 5999999999999999999999999999866 89999999999987 89999999999544321 246788
Q ss_pred eCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCCHHH-----------------------HHH
Q 013743 69 DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTA-----------------------VVR 125 (437)
Q Consensus 69 ~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~-----------------------l~~ 125 (437)
.|++.+|+ ++++|++|++++.++ +|+..+++|+|++++++|..... +.+
T Consensus 165 ~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 236 (485)
T PF00118_consen 165 PGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKK 236 (485)
T ss_dssp ESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHH
T ss_pred cccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhcc
Confidence 89999887 999999999999887 36788899999999998866555 788
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcC
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLD 205 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~ 205 (437)
+++++.+.|++|||++++|++.++++|..+++ .++ .++++++|++|+.+||++++++ +++++++
T Consensus 237 ~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i-----~~v~~~~l~~i~~~tg~~ii~~-----~~~l~~~ 300 (485)
T PF00118_consen 237 ILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVI-----RRVSKEDLERIARATGASIISS-----LDDLSDE 300 (485)
T ss_dssp HHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEE-----SSEHHHHHHHHHHHHTSBEBSS-----CGGSTGG
T ss_pred ccceEeeeccceeeeecccccccchhhhhhhh------hcc-----ccchHHHHHhhhcccCCcEecc-----cccccch
Confidence 99999999999999999999999999999985 455 3568999999999999999999 8999988
Q ss_pred CCcceeEE---EEecceEEEEc--CCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHH
Q 013743 206 MLGTCKKV---TISKDDTVILD--GAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVG 280 (437)
Q Consensus 206 ~lG~~~~v---~i~~~~~~~~~--~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~ 280 (437)
++|+|+.+ ++++++|++|+ +|. .+..+||+|||+|+.+++
T Consensus 301 ~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~g~t~~~l~ 345 (485)
T PF00118_consen 301 DLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLRGPTEFELE 345 (485)
T ss_dssp GSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEEESSHHHHH
T ss_pred hhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEeccccchhHH
Confidence 89999999 56789999998 343 346899999999999999
Q ss_pred HhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHH
Q 013743 281 EKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGK 358 (437)
Q Consensus 281 E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~ 358 (437)
|++|+++||+++++++++++ +|||||++|++|+++|++++.. ++++++++++|++||+.||++|++|||+|+.+++++
T Consensus 346 e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~ 425 (485)
T PF00118_consen 346 ERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISK 425 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehh
Confidence 99999999999999999988 9999999999999999888876 789999999999999999999999999999999999
Q ss_pred HHhhC--CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCC
Q 013743 359 LLEQD--NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 416 (437)
Q Consensus 359 l~~~~--~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~ 416 (437)
|+..| +.++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 426 l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 426 LKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred hHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99854 57999999999999999999999999999999999999999999999998865
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-55 Score=420.18 Aligned_cols=360 Identities=23% Similarity=0.360 Sum_probs=324.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC-C----HHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCC-----c
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS-T----SEEIAQVGTISANG------EREIGELIAKAMEKVGKEG-----V 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~-~----~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g-----~ 64 (437)
+||+.|+.||+.|.+.+++.|...++.-. | +++|.++|+|++.+ ++.|++|.++|+.++...+ .
T Consensus 116 iHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~Iq 195 (527)
T KOG0363|consen 116 IHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQ 195 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCcccee
Confidence 59999999999999999999998776543 2 56899999999875 5899999999999997654 3
Q ss_pred EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCC--------------CH----------
Q 013743 65 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NL---------- 120 (437)
Q Consensus 65 I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~--------------~~---------- 120 (437)
|.|+.||+++|| .+-+|+++++.+-. ..|+.++||+||+-+.++. +.
T Consensus 196 IIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AE 266 (527)
T KOG0363|consen 196 IIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAE 266 (527)
T ss_pred eehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHH
Confidence 778999999999 89999999987642 2688899999999887642 11
Q ss_pred -HHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 121 -TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 121 -~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
+.+.+.+++|.+.|+|++|..+-|.+...++|...+ |++|....|.. +|||+..|||.+.|. +
T Consensus 267 keKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dag------i~aIEHADFdG-----iERLalvtGGeI~ST-----F 330 (527)
T KOG0363|consen 267 KEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAG------IMAIEHADFDG-----IERLALVTGGEIVST-----F 330 (527)
T ss_pred HHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcC------cceeecccchh-----HHHHhhcccceeeec-----c
Confidence 125678899999999999999999999999999887 68998776654 599999999999999 9
Q ss_pred ccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 200 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 200 ~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
++++...+|+|+.++ ++++++.-|+||.- |..|||++||+|+
T Consensus 331 d~p~~~klG~C~~IeeimiGed~li~FSGv~~-----------------------------------GeActIVlrGat~ 375 (527)
T KOG0363|consen 331 DNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-----------------------------------GEACTIVLRGATQ 375 (527)
T ss_pred CCcchhccccchhhHHHhcCccceeeeccccc-----------------------------------ccceEEEEecccH
Confidence 999999999999988 68999999999863 4479999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
+++||.+|++|||||++....++. ++.|||+.||-++..+.+++.. ++++..++.+|++||..+|.+||.|||||+.+
T Consensus 376 q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsae 455 (527)
T KOG0363|consen 376 QILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAE 455 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHH
Confidence 999999999999999999999999 9999999999999999999887 79999999999999999999999999999999
Q ss_pred HHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCccCC
Q 013743 355 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 420 (437)
Q Consensus 355 v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~~~ 420 (437)
++++|++.| ...+|+|.++|+|.||.+.||+|++.+|...+.+|.|+|.+|||+|.||.+.|+...
T Consensus 456 lva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~ 524 (527)
T KOG0363|consen 456 LVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERE 524 (527)
T ss_pred HHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccc
Confidence 999999887 478999999999999999999999999999999999999999999999999888653
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-55 Score=423.12 Aligned_cols=356 Identities=19% Similarity=0.265 Sum_probs=317.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccCC---------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGKEG--------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~g--------- 63 (437)
+||+.|...|+.|.+..+++|.+++.|++ |++.|.+-|.||+|+ ...|+++.++|+.++-..+
T Consensus 122 iHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkd 201 (534)
T KOG0358|consen 122 IHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKD 201 (534)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhh
Confidence 59999999999999999999999999987 788899999999986 3688999999999875421
Q ss_pred -cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC-------------CCHHH-------
Q 013743 64 -VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA------- 122 (437)
Q Consensus 64 -~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i-------------~~~~~------- 122 (437)
.|.++.||.++|+ ++++|++|....... ..|..+++++|-++.+.| +++.+
T Consensus 202 IkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilke 273 (534)
T KOG0358|consen 202 IKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKE 273 (534)
T ss_pred hhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHH
Confidence 3667899999998 999999999775432 146677888888877643 34433
Q ss_pred ----HHHHHHHHHhcCCCEEEEecCC-----cHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEecc
Q 013743 123 ----VVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITE 193 (437)
Q Consensus 123 ----l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~ 193 (437)
+++++++|+++|+|++++|++| +|.|+|||.+.+ |++|| ++.++|+|.+++.+|++++.+
T Consensus 274 ER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klk------imvik-----dieRediefick~l~c~Pia~ 342 (534)
T KOG0358|consen 274 ERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVIK-----DIEREDIEFICKTLGCKPIAD 342 (534)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCc------EEEEc-----cccHhhHHHHHhhcCCeecch
Confidence 4678899999999999999976 899999997766 78887 456899999999999999999
Q ss_pred CcCCccccCCcCCCcceeEEEE----ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEE
Q 013743 194 ELGMDLEKVNLDMLGTCKKVTI----SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVL 269 (437)
Q Consensus 194 ~~~~~~~~~~~~~lG~~~~v~i----~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI 269 (437)
++.++++.||++..++. ++.+++-+.|+.++ |.+++|
T Consensus 343 -----id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~----------------------------------g~tvsi 383 (534)
T KOG0358|consen 343 -----IDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA----------------------------------GRTVSI 383 (534)
T ss_pred -----hhhcChhhcCcchhhhhcccCCCccEEEEEEeecC----------------------------------CCceEE
Confidence 99999999999999985 35688888887653 578999
Q ss_pred EecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHH
Q 013743 270 KIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAAN 347 (437)
Q Consensus 270 ~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~N 347 (437)
++||++...++|.+|++|||||++|+..+.. ++||||+.|+.++..|..++.+ ++.++|++++|++|||.||.+||+|
T Consensus 384 l~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeN 463 (534)
T KOG0358|consen 384 LLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAEN 463 (534)
T ss_pred EEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhh
Confidence 9999999999999999999999999999998 9999999999999999999988 7999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 348 AGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 348 aG~d~~~v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
||++|..++++|++.| ..++|+|.+.|.+.||++..|+.|+.|..++++.|+|++.+||+||+|+..
T Consensus 464 AGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 464 AGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred CCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999987 478999999999999999999999999999999999999999999999854
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-54 Score=417.36 Aligned_cols=359 Identities=19% Similarity=0.266 Sum_probs=325.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhccC-C--------
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGKE-G-------- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~~-g-------- 63 (437)
+||+.|+++|.+|++.++..|++++.|++ +...++++..++..+ .+..+.+..+|+++++.+ |
T Consensus 115 ~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y 194 (527)
T KOG0364|consen 115 IHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRY 194 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhh
Confidence 59999999999999999999999888887 667888888887654 467888999999999875 3
Q ss_pred -cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCCC-----------------------
Q 013743 64 -VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN----------------------- 119 (437)
Q Consensus 64 -~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~----------------------- 119 (437)
.+.|++|+.++|| ++++|+.+.+...||. |+..++||+|+++||++..
T Consensus 195 ~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqi 266 (527)
T KOG0364|consen 195 AKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQI 266 (527)
T ss_pred ccccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHh
Confidence 3788999999999 9999999999999985 6778999999999998631
Q ss_pred -HHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCc
Q 013743 120 -LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (437)
Q Consensus 120 -~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~ 198 (437)
-+++..+++.|....++|||+.++++|.|.+||.++++. +.++.++.|-.|++++||++++++
T Consensus 267 eee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT-----------~~rr~rKtDn~ria~acga~iv~r----- 330 (527)
T KOG0364|consen 267 EEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANIT-----------AIRRLRKTDNNRIARACGARIVNR----- 330 (527)
T ss_pred hHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCch-----------hhhhhhccccchhhhhcCceeccC-----
Confidence 123456778899999999999999999999999999864 345778999999999999999999
Q ss_pred cccCCcCCCcc-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 013743 199 LEKVNLDMLGT-CKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGA 274 (437)
Q Consensus 199 ~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~ 274 (437)
++++.+.+.|+ |+.+++ ++++|+||+.|.+|+ .|||++||+
T Consensus 331 pedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk-----------------------------------aCtillrg~ 375 (527)
T KOG0364|consen 331 PEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK-----------------------------------ACTILLRGP 375 (527)
T ss_pred hhhCchhccCcccceeeeeccCchhhhhhhhcCCCc-----------------------------------ceEEEeccC
Confidence 99999999995 889996 478999999999986 599999999
Q ss_pred chhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCH
Q 013743 275 SEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEG 352 (437)
Q Consensus 275 t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~ 352 (437)
|..+++|.+|.+.||..+.|+.+-++ ++||||++||.+|+.|++.+.. ++-+++-+++.+.||+.+|++|++|||.++
T Consensus 376 skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~ 455 (527)
T KOG0364|consen 376 SKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANP 455 (527)
T ss_pred chhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccH
Confidence 99999999999999999999999999 9999999999999999987766 789999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCcc
Q 013743 353 AVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 418 (437)
Q Consensus 353 ~~v~~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~ 418 (437)
...++.++..| ...+|+|..+|.++||.+.++|+|..+|.+..+.|+++++++||||+|++...+.
T Consensus 456 Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 456 IRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred HHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 99999999887 3578999999999999999999999999999999999999999999999876543
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-51 Score=401.30 Aligned_cols=366 Identities=18% Similarity=0.278 Sum_probs=320.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHh-ccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHHhcc---CC-----
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKS-RARMIS--TSEEIAQVGTISANG------EREIGELIAKAMEKVGK---EG----- 63 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~~~L~~va~ts~~~------~~~ls~lv~~A~~~v~~---~g----- 63 (437)
+||+.|+.||+.|...+++++.+ ++.|++ +...|.++++|++++ .++|++++++|+..+.. +|
T Consensus 115 ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~yp 194 (545)
T KOG0360|consen 115 IHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYP 194 (545)
T ss_pred CcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceecc
Confidence 59999999999999999999987 788888 678899999999876 38999999999987744 23
Q ss_pred ----cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccC-------------CCHHHH---
Q 013743 64 ----VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTAV--- 123 (437)
Q Consensus 64 ----~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i-------------~~~~~l--- 123 (437)
+|.|-.|.+..|| .+++|+.++...++.. |+..+.++||+++|+.+ .+++++
T Consensus 195 i~~vnILkahG~s~~eS-~l~~GyaLnc~~asq~-------m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~i 266 (545)
T KOG0360|consen 195 INSVNILKAHGKSQIES-MLLPGYALNCSVASQM-------MPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQI 266 (545)
T ss_pred ccceeEEecCCccchhh-eeecceeeeccHhhhc-------cccccccceeeeEecccccccccccceEEEcChHHHHHH
Confidence 3778899999998 8999999999887754 68888899999999964 445443
Q ss_pred --------HHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCc
Q 013743 124 --------VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195 (437)
Q Consensus 124 --------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~ 195 (437)
++-+++|...|+|+|+++++|||.++++|++.+ ++||| |..+++|++|+++||++++++-.
T Consensus 267 r~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~~k~dlk~iakatGat~~sSla 335 (545)
T KOG0360|consen 267 RQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RCKKEDLKRIAKATGATLLSSLA 335 (545)
T ss_pred HHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HHHHHHHHHHHHhhCCeeeehhh
Confidence 234668999999999999999999999999988 57774 66899999999999999999922
Q ss_pred CCcc-ccCCcCCCcceeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEe
Q 013743 196 GMDL-EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKI 271 (437)
Q Consensus 196 ~~~~-~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v 271 (437)
.+.- +.+.+.++|+|+.|. +++++++++.+..- ..++|++
T Consensus 336 ~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka------------------------------------~~aSiIL 379 (545)
T KOG0360|consen 336 NLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA------------------------------------TSASIIL 379 (545)
T ss_pred ccccccccChhhccchhHHHHHhcccceeEEeccCcc------------------------------------ceeeEEE
Confidence 1111 245788999999988 46888988887432 2689999
Q ss_pred cCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcC
Q 013743 272 GGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAG 349 (437)
Q Consensus 272 ~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG 349 (437)
||+|++.+||.+|+++|||+++|..++++ +|||||++|.+++-+|+.|+.+ ..++|+++.-|+.||..+|++|+-||+
T Consensus 380 rgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa 459 (545)
T KOG0360|consen 380 RGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAA 459 (545)
T ss_pred ecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhc
Confidence 99999999999999999999999999999 9999999999999999999988 589999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCC-----------CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCcc
Q 013743 350 VEGAVVVGKLLEQDN-----------TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 418 (437)
Q Consensus 350 ~d~~~v~~~l~~~~~-----------~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~ 418 (437)
.|+.++++++++.|+ .++|+|+.+|++.|.++.|+++|..+|..+|+.|+|.+..+||||++|.-.|..
T Consensus 460 ~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~ 539 (545)
T KOG0360|consen 460 KDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPEL 539 (545)
T ss_pred cccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccc
Confidence 999999999998872 579999999999999999999999999999999999999999999999876665
Q ss_pred CCC
Q 013743 419 EKE 421 (437)
Q Consensus 419 ~~~ 421 (437)
...
T Consensus 540 ~~~ 542 (545)
T KOG0360|consen 540 QVA 542 (545)
T ss_pred ccc
Confidence 443
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-49 Score=391.72 Aligned_cols=360 Identities=20% Similarity=0.259 Sum_probs=314.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccc----cCCCHHHHHHHHHHhcC-----CchhHHHHHHHHHHHhccCC-------c
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRAR----MISTSEEIAQVGTISAN-----GEREIGELIAKAMEKVGKEG-------V 64 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~----~v~~~~~L~~va~ts~~-----~~~~ls~lv~~A~~~v~~~g-------~ 64 (437)
++|.+|++||+.|.+.+++.|+++.. ++.|.+ .++++++. .++++++++++|+..+.+.+ .
T Consensus 122 l~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIr 198 (537)
T KOG0362|consen 122 LTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIR 198 (537)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceE
Confidence 58999999999999999999998643 333555 44444443 36899999999999998863 4
Q ss_pred EEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEeccc-------------CCCHHHHHH------
Q 013743 65 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVR------ 125 (437)
Q Consensus 65 I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------i~~~~~l~~------ 125 (437)
|+++.|++++|| +++.|++|++..... ...-+.++|.++.|+ |++++++.+
T Consensus 199 VcKi~Gg~l~~S-~Vv~GmVfkr~~eG~---------v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe 268 (537)
T KOG0362|consen 199 VCKILGGGLEDS-CVVCGMVFKRDPEGE---------VKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEE 268 (537)
T ss_pred EEEEecCCcccc-eeeEEEEeccccCCc---------ccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccH
Confidence 889999999999 999999999987532 245578899999998 677776543
Q ss_pred -----HHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccc
Q 013743 126 -----VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 200 (437)
Q Consensus 126 -----~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~ 200 (437)
.++.|..+|.++|++...+++.+|+++ |++ +|++++.++ +.||.||++..||++.++ +.
T Consensus 269 ~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~ 332 (537)
T KOG0362|consen 269 ALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRRLCRTVGATALPR-----LF 332 (537)
T ss_pred HHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHHHHHHcCCccchh-----cc
Confidence 456788899999999999999999999 553 389999884 899999999999999999 88
Q ss_pred cCCcCCCcceeEEEE---ecceEEEEc-CCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCch
Q 013743 201 KVNLDMLGTCKKVTI---SKDDTVILD-GAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 276 (437)
Q Consensus 201 ~~~~~~lG~~~~v~i---~~~~~~~~~-~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~ 276 (437)
.+.+..+|+|++|+. ++..++.|. +++. +.++||+|||+|+
T Consensus 333 ~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~-----------------------------------~~~~TvVLRgst~ 377 (537)
T KOG0362|consen 333 PPAPEELGYCDSVSTQEIGDTLVVVFRWESTG-----------------------------------TRVATVVLRGATQ 377 (537)
T ss_pred CCCCccccccceeeeeecCCceEEEEeeccCC-----------------------------------CceeEEEEcccch
Confidence 888999999999985 456666666 3332 3589999999999
Q ss_pred hHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHH
Q 013743 277 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 354 (437)
Q Consensus 277 ~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 354 (437)
..+|+.||.+.|++++.+..++++ ++||+|++|++|+++|.+++.. ++..|++++.|++||+.+|++|++|||++..+
T Consensus 378 s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~e 457 (537)
T KOG0362|consen 378 SILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTE 457 (537)
T ss_pred hhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHH
Confidence 999999999999999999999999 9999999999999999999988 89999999999999999999999999999999
Q ss_pred HHHHHHhhCC--CceeEeCCCC-ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcCCccCCCCCC
Q 013743 355 VVGKLLEQDN--TDLGYDAAKG-EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG 424 (437)
Q Consensus 355 v~~~l~~~~~--~~~Gid~~~g-~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~~~~~~~~~~ 424 (437)
++++|...|. .+.|+|+..+ ...|+.+.||||-+.+|.++++.|+++|+++|++|+||+++|...|.||+
T Consensus 458 via~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~~ 530 (537)
T KOG0362|consen 458 VIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPPG 530 (537)
T ss_pred HHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCCC
Confidence 9999988774 5679998776 58999999999999999999999999999999999999999998888874
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-49 Score=386.55 Aligned_cols=354 Identities=20% Similarity=0.321 Sum_probs=308.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCc------hhHHHHHHHHHHHhcc-CC-----c--EE
Q 013743 1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGE------REIGELIAKAMEKVGK-EG-----V--IT 66 (437)
Q Consensus 1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~------~~ls~lv~~A~~~v~~-~g-----~--I~ 66 (437)
+||..|..||+.|.+.++++|+..+.++ +++.|..+++|+++++ +.+++++++|+..+.. ++ . |.
T Consensus 113 lhprii~~gfe~a~~~~l~~L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim 191 (520)
T KOG0359|consen 113 LHPRIITEGFEAAKNKALEFLEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIM 191 (520)
T ss_pred CCcchhhhHHHHHHHHHHhhhhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhh
Confidence 6999999999999999999999777666 4889999999999873 6788899999998873 22 1 33
Q ss_pred EEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEecccCC-------------CHHH-----------
Q 013743 67 IHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA----------- 122 (437)
Q Consensus 67 ~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~-------------~~~~----------- 122 (437)
.....+..|+ .+++|+++++|..||. ||+.++|++||+++.++. +.+|
T Consensus 192 ~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~F 263 (520)
T KOG0359|consen 192 EMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKF 263 (520)
T ss_pred hhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHH
Confidence 3444566777 8999999999999996 688999999999998642 2222
Q ss_pred HHHHHHHHHhcC---CC-EEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCc
Q 013743 123 VVRVLELALKRQ---RP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 198 (437)
Q Consensus 123 l~~~le~i~~~~---~~-lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~ 198 (437)
+.+.+.+|...+ +. +||.|++|||..|..|++++| +|. ++.++.+||||..+|||..+.+
T Consensus 264 i~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gI------laL-----RRAKRRNmERL~lacGG~a~ns----- 327 (520)
T KOG0359|consen 264 IDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGI------LAL-----RRAKRRNMERLVLACGGEAVNS----- 327 (520)
T ss_pred HHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcch------HHH-----HHHhhhhHHHHHHhhccceecc-----
Confidence 122334455444 23 457799999999999999984 555 4668999999999999999999
Q ss_pred cccCCcCCCcceeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCc
Q 013743 199 LEKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 275 (437)
Q Consensus 199 ~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t 275 (437)
++|++++++|+|+.|+. ++++|||+++|++|. .|||+++|||
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~-----------------------------------S~TiLikgpn 372 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPS-----------------------------------SVTILIKGPN 372 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCCCc-----------------------------------ceEEEEeCCc
Confidence 99999999999999995 789999999999984 6999999999
Q ss_pred hhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHH
Q 013743 276 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 353 (437)
Q Consensus 276 ~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 353 (437)
.+.+.+.+++++|+|++++++++++ ++||+|++|.+++.+|+....+ +++.++++++|++||..+|++|+.|+|+|+.
T Consensus 373 kht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~q 452 (520)
T KOG0359|consen 373 KHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQ 452 (520)
T ss_pred cchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchH
Confidence 9999999999999999999999999 9999999999999999977666 7999999999999999999999999999999
Q ss_pred HHHHHHHhhCC-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhc
Q 013743 354 VVVGKLLEQDN-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414 (437)
Q Consensus 354 ~v~~~l~~~~~-~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~ 414 (437)
+.+.+|...|. ...|+|+.+|+..+....||||.+.||.+.|.+++-+|+.||-+|+|+..
T Consensus 453 e~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 453 ETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred HHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 99999988763 35799999999999999999999999999999999999999999999976
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-47 Score=360.59 Aligned_cols=242 Identities=19% Similarity=0.275 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccC
Q 013743 123 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV 202 (437)
Q Consensus 123 l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~ 202 (437)
+.+++++++++|.+++||||+|||+|.|+|..|++ -||||++- -++|-||+.|||+++.+ ++++
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVGG-----pEiEliAiaT~grIVpr-----F~eL 207 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVGG-----PEIELIAIATGGRIVPR-----FSEL 207 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecCC-----cceEEEEeecCCeeecc-----Hhhh
Confidence 44477889999999999999999999999999985 58888762 36799999999999999 9999
Q ss_pred CcCCCcceeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchh
Q 013743 203 NLDMLGTCKKVTI-----SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 277 (437)
Q Consensus 203 ~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~ 277 (437)
+.+.||+|+.|.. .++++..++.|++++ .+||.|||+|..
T Consensus 208 ~~~kLG~aglVrE~sfgttkdkmlviEqc~nsk-----------------------------------aVTifvRg~Nkm 252 (400)
T KOG0357|consen 208 TAEKLGFAGLVREISFGTTKDKMLVIEQCKNSK-----------------------------------AVTIFVRGGNKM 252 (400)
T ss_pred CHhhccccceEEEEecccccceEEEEEecCCCc-----------------------------------eEEEEEecCcce
Confidence 9999999999984 378999999999864 689999999999
Q ss_pred HHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhccc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHH
Q 013743 278 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 355 (437)
Q Consensus 278 ~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 355 (437)
+++|.+|++|||||++|+.++|. +|+|||++|+.||.++.+-++. ++.+||++++|++||++||-.||+|+|++|.+.
T Consensus 253 ii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ 332 (400)
T KOG0357|consen 253 IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIET 332 (400)
T ss_pred eHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhh
Confidence 99999999999999999999999 9999999999999999988877 899999999999999999999999999999999
Q ss_pred HHHHHhhC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhhcC
Q 013743 356 VGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 415 (437)
Q Consensus 356 ~~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e~a~~iL~id~iI~~~ 415 (437)
++++++.+ +.++|+|+.-..--||.+.+|+|++..|++.+..|++++.|||+||+|+...
T Consensus 333 ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 333 LSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred hhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 99998664 6899999988788999999999999999999999999999999999998653
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.97 E-value=1.6e-30 Score=243.89 Aligned_cols=192 Identities=31% Similarity=0.482 Sum_probs=171.9
Q ss_pred HHHHHHHHHhcC-----CchhHHHHHHHHHHHhccC------C--cEEEEeCCCcccceeeEeceEEeecccCccccccc
Q 013743 32 EEIAQVGTISAN-----GEREIGELIAKAMEKVGKE------G--VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQ 98 (437)
Q Consensus 32 ~~L~~va~ts~~-----~~~~ls~lv~~A~~~v~~~------g--~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~ 98 (437)
+.|.++|+|+++ +++.+++++++|+..++++ + .|++.+|+++.|+ ++++|++|++++.||+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-----
Confidence 468999999998 5789999999999999873 3 3778999999998 9999999999999986
Q ss_pred ccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhh
Q 013743 99 KNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKAN 178 (437)
Q Consensus 99 ~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~ 178 (437)
|+..++||+|++++++|.. +|+++++|++.++++|.+++ |++|++ +++++
T Consensus 76 --m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~~------I~~v~~-----~~~~~ 125 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKAG------IMAVRR-----VKKED 125 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHCC------CEEEEe-----CCHHH
Confidence 5788999999999998876 88999999999999999977 678875 46899
Q ss_pred HHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHH
Q 013743 179 MQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL 255 (437)
Q Consensus 179 le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~l 255 (437)
|+|||++|||+++++ +++++++++|+|++|++. ++++++|.+|..+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999999 899999999999999975 4568899887653
Q ss_pred HHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHc
Q 013743 256 QERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE 299 (437)
Q Consensus 256 ~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~ 299 (437)
..|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 ---------~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 ---------KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ---------CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 48999999999999999999999999999999874
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.97 E-value=2.3e-29 Score=243.16 Aligned_cols=197 Identities=17% Similarity=0.232 Sum_probs=170.1
Q ss_pred chhHHHHHHHHHHHhccC------------CcEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEE
Q 013743 45 EREIGELIAKAMEKVGKE------------GVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILV 112 (437)
Q Consensus 45 ~~~ls~lv~~A~~~v~~~------------g~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill 112 (437)
.+.|++++++|+..+.++ -.|.+.+|++++|+ ++++|+++++++.++. |+..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~~-------m~~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHKR-------MPSKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCcc-------CCcccCCCcEEE
Confidence 478999999999988532 13778999999998 9999999999988763 788899999999
Q ss_pred ecccCCC------HHH-----------HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcch
Q 013743 113 HEKKISN------LTA-----------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENR 175 (437)
Q Consensus 113 ~d~~i~~------~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~ 175 (437)
++++|.. +++ +...+++|++.|+++||++++|++.|+++|.+++ |++|+. ++
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~g------I~~v~~-----v~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAG------ITLVLN-----VK 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCC------CEEEEe-----cC
Confidence 9998732 222 3457889999999999999999999999999988 577764 46
Q ss_pred hhhHHHHHHHhCCeEeccCcCCccc-cCCcCCCcceeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHHhhc
Q 013743 176 KANMQDLAVLTGGDLITEELGMDLE-KVNLDMLGTCKKVTISK--------DDTVILDGAGDKKSIEERCEQIRSAIENS 246 (437)
Q Consensus 176 ~~~le~la~~tG~~ii~~~~~~~~~-~~~~~~lG~~~~v~i~~--------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 246 (437)
+++|+|||++|||+++++ +. +++++++|+|+.|++.+ ++++||++|+.+
T Consensus 161 ~~dl~rIa~~tGa~ii~~-----i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------------- 218 (261)
T cd03334 161 PSVLERISRCTGADIISS-----MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------------- 218 (261)
T ss_pred HHHHHHHHHHhCCEEecC-----hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------
Confidence 899999999999999998 54 67889999999999742 589999998754
Q ss_pred CChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcC
Q 013743 247 TSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300 (437)
Q Consensus 247 ~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g 300 (437)
..+||+|||+|+.+++|.||+++||+++++++..+.
T Consensus 219 ------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 ------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 379999999999999999999999999999998876
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.44 E-value=1.2e-12 Score=145.26 Aligned_cols=206 Identities=17% Similarity=0.261 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHhccC----C--------cEEEEeCCCcccceeeEeceEEeecccCcccccccccCceeecCceEEEe
Q 013743 46 REIGELIAKAMEKVGKE----G--------VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVH 113 (437)
Q Consensus 46 ~~ls~lv~~A~~~v~~~----g--------~I~~~~g~~~~ds~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~ 113 (437)
+-+..++-+|...+.++ | .|+++.||+..|+ +++.|+++.+..+|. .|..++++|+|+++
T Consensus 335 ~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~k-------~M~~~~e~prilll 406 (1598)
T KOG0230|consen 335 DIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAHK-------RMATKYENPRILLL 406 (1598)
T ss_pred HHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhhh-------hhhhhccCCceEEE
Confidence 34556667777777664 1 3778999998888 999999999998774 47788999999999
Q ss_pred cccC---------CCHHH--------HHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchh
Q 013743 114 EKKI---------SNLTA--------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRK 176 (437)
Q Consensus 114 d~~i---------~~~~~--------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~ 176 (437)
.++| .+++. +..++.+|...+++++++.++|+..|.++|....+. .++ ++++
T Consensus 407 ~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~-----lvl------nvK~ 475 (1598)
T KOG0230|consen 407 GGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGIS-----LVL------NVKR 475 (1598)
T ss_pred ecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeE-----EEE------eccH
Confidence 9864 23332 334667788888999999999999999999777652 222 5578
Q ss_pred hhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEe--------cceEEEEcCCCChhhHHHHHHHHHHHHhhcCC
Q 013743 177 ANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS--------KDDTVILDGAGDKKSIEERCEQIRSAIENSTS 248 (437)
Q Consensus 177 ~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~--------~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 248 (437)
.-|+||+++|||.|+++ ++.++...+|+|..+++. ...++||++|+.+.
T Consensus 476 s~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l------------------ 532 (1598)
T KOG0230|consen 476 SLLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL------------------ 532 (1598)
T ss_pred HHHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC------------------
Confidence 99999999999999999 888999999999999974 25678999999763
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHH
Q 013743 249 DYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALL 310 (437)
Q Consensus 249 ~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~ 310 (437)
.|||++||.+..++.++++-+.-+..++.+..-+- ++.--|+...
T Consensus 533 -----------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 -----------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -----------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 58999999999999999999999999999765554 8877777543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.5e-05 Score=84.40 Aligned_cols=94 Identities=48% Similarity=0.713 Sum_probs=82.6
Q ss_pred HHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCC
Q 013743 127 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDM 206 (437)
Q Consensus 127 le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~ 206 (437)
++...+.+.+++++.+++..+++..++.|.+++..++|+|+.|+|++.++..|++++++|+.++.+++.+ .....
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~ 311 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAK 311 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-----HHHHH
Confidence 5666677789999999999999999999999999999999999999999999999999999999988653 15578
Q ss_pred CcceeEEEEecceEEEEcC
Q 013743 207 LGTCKKVTISKDDTVILDG 225 (437)
Q Consensus 207 lG~~~~v~i~~~~~~~~~~ 225 (437)
+|.|..|.+.++.+....|
T Consensus 312 ~~ga~~v~~~~d~t~~~~G 330 (524)
T COG0459 312 LGGAKIVSVLKDLTTIVLG 330 (524)
T ss_pred ccCceEEeecccCceeecC
Confidence 9999999988777766665
No 47
>smart00574 POX domain associated with HOX domains.
Probab=54.50 E-value=54 Score=28.59 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhh
Q 013743 249 DYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKL 319 (437)
Q Consensus 249 ~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~ 319 (437)
.-+|..+..+.++|. ..++|++++.+--..-++.++..= .|+|.|++-.+.+.+|+-.
T Consensus 69 ~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 69 TAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTI 127 (140)
T ss_pred hhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456666777776664 357899999888888888877764 7899999888887777643
No 48
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=48.65 E-value=74 Score=26.86 Aligned_cols=69 Identities=6% Similarity=0.114 Sum_probs=49.1
Q ss_pred CHHHHHHHHHH-HHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEE--ecCCCCcchhhhHHHHHHHhCC
Q 013743 119 NLTAVVRVLEL-ALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAI--KAPGFGENRKANMQDLAVLTGG 188 (437)
Q Consensus 119 ~~~~l~~~le~-i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV--~~~~~~~~~~~~le~la~~tG~ 188 (437)
+.+++.+.+++ +.+.+.-+|++.+.+-+..-+.+.+.+ +-.+-|+.| +..++++.+..-++++.+++|.
T Consensus 44 ~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~-~~~PaIieIP~k~~~y~~~~d~i~~~~~~~~~~ 115 (115)
T TIGR01101 44 TVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT-RSIPAVLEIPSKDHPYDASKDSILRRARGMFNP 115 (115)
T ss_pred CHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC-CcCCEEEEECCCCCCCCCcccHHHHHHHHHcCC
Confidence 45678888888 566678899999999888888887755 333444444 2334566677888888888773
No 49
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=47.14 E-value=23 Score=34.96 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=37.4
Q ss_pred ecCceEEEecccCCCH-----HHHHHHHHHHH-hcCCCEEEEecCCcHHH
Q 013743 105 LEDPLILVHEKKISNL-----TAVVRVLELAL-KRQRPLLIVAEDVESEA 148 (437)
Q Consensus 105 l~~p~Ill~d~~i~~~-----~~l~~~le~i~-~~~~~lvi~~~~i~~~a 148 (437)
+..|.+|+.|.|+.+. .+++|++|.+. +.+.|+|-+..++++.+
T Consensus 144 Lt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 144 LTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred hcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 6889999999998765 37999999987 47899999999998764
No 50
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=43.07 E-value=85 Score=27.46 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcC-ccccchHHHHHHHHHHHhhc
Q 013743 249 DYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 249 ~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~g-vvpGGG~~e~~ls~~L~~~~ 320 (437)
.-++..+..+.++|. ..++|++++.+--..=++.....= .|.|.|++-.+.+.+|+-.+
T Consensus 69 ~~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 69 PAERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMS 128 (140)
T ss_pred hhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 345666666666664 357888888888888887776663 78899998888887776543
No 51
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=39.60 E-value=61 Score=31.47 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCe
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ 189 (437)
=+|.|...+++|||.....++.....|.+.++ +|..+......++ .+.++.++.++|..
T Consensus 83 n~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi----~v~~~~~~~~~~~-~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLEEDLGPKFKQLGV----EATFLNLTSVDGM-KKSITELGEKYGRE 141 (289)
T ss_pred CHHHHhccCCcEEEEcCcccHHHHHHHHHcCC----cEEEEcCCCHHHH-HHHHHHHHHHhCCH
Confidence 47888999999999988888887777866654 3555543222223 46678888887763
No 52
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=39.16 E-value=1.2e+02 Score=24.07 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCe
Q 013743 125 RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (437)
Q Consensus 125 ~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ 189 (437)
+-++.+.+....+|++++|+++....-+..---...++++-| ..+++|.++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V----------~s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF----------KSKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE----------CCHHHHHHHhCCC
Confidence 345566666688999999999987765442111112334443 2357888888764
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.38 E-value=1.1e+02 Score=27.20 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCC-CCcchhhhHHHHHHHhCC
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPG-FGENRKANMQDLAVLTGG 188 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~-~~~~~~~~le~la~~tG~ 188 (437)
=+|.+.+.+++|||............|.+.++ +++.+.... +.++ .+.++.++.++|-
T Consensus 52 n~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi----~v~~~~~~~~~~~~-~~~~~~lg~~~g~ 110 (195)
T cd01143 52 NVEKIVALKPDLVIVSSSSLAELLEKLKDAGI----PVVVLPAASSLDEI-YDQIELIGKITGA 110 (195)
T ss_pred CHHHHhccCCCEEEEcCCcCHHHHHHHHHcCC----cEEEeCCCCCHHHH-HHHHHHHHHHhCC
Confidence 37788889999998866555556666766654 355554332 1122 3556677776664
No 54
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=33.11 E-value=12 Score=40.16 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=49.0
Q ss_pred cCCCEEEEecCCcH-----HHHHHHHHcccccC----ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccC
Q 013743 133 RQRPLLIVAEDVES-----EALATLILNKLRAG----IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE 194 (437)
Q Consensus 133 ~~~~lvi~~~~i~~-----~al~~l~~n~i~~~----~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~ 194 (437)
...++.|..+++++ +++..+..+++++. .+|++++.| +++...+.|++..++++.++...+
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 34577888888888 77777777777653 478999888 899999999999999999877664
No 55
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.40 E-value=1.4e+02 Score=26.51 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=26.5
Q ss_pred HHHHHhcCCCEEEEecCCcHH-HHHHHHHcccccCceEEEEe
Q 013743 127 LELALKRQRPLLIVAEDVESE-ALATLILNKLRAGIKVCAIK 167 (437)
Q Consensus 127 le~i~~~~~~lvi~~~~i~~~-al~~l~~n~i~~~~~v~aV~ 167 (437)
+|++...+++|||......+. ....|...++ +++.+.
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gI----pvv~i~ 99 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGI----PVLYVN 99 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCC----CEEEeC
Confidence 678888999999887665553 7777766664 366664
No 56
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.62 E-value=1.6e+02 Score=23.15 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHH-cccccCceEEEEecCCCCcchhhhHHHHHHHhCCe
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLIL-NKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~-n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ 189 (437)
.++.+++....+||++.|.++....-|.. .+..+ +++. . ....++|..++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~-Vpv~--~--------~~t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKS-IKIV--Y--------IDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCC-CCEE--E--------eCCHHHHHHHHCCc
Confidence 45566666789999999999988776643 22222 2232 1 23457888988864
No 57
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.43 E-value=1.4e+02 Score=25.14 Aligned_cols=42 Identities=33% Similarity=0.325 Sum_probs=31.8
Q ss_pred EEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHH
Q 013743 111 LVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLIL 154 (437)
Q Consensus 111 ll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~ 154 (437)
+++|++ +++...+.++.+.+.|+++|+..-+++++-+..+.+
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 444664 777788888888899999999999999988887765
No 58
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=31.21 E-value=53 Score=29.56 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=29.4
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|... .+.+.+++..+++.|..+|++..+.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 478999999988543 34566777777666778888876654
No 59
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.14 E-value=82 Score=30.17 Aligned_cols=74 Identities=16% Similarity=0.053 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCcc
Q 013743 120 LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 199 (437)
Q Consensus 120 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~ 199 (437)
.+++.++.+.+.+. .+.++...+|..++.+|...+ +-++|.++..-.....|+.+|. ||-.++-|...-++
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stpfd~~s~d~l~~~~------~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl 125 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTPFDEESVDFLEELG------VPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTL 125 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE-SHHHHHHHHHHT-------SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--H
T ss_pred HHHHHHHHHHHHHc--CCEEEECCCCHHHHHHHHHcC------CCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCH
Confidence 34555666666654 466677888999999997766 5678887754444566677776 89988877544444
Q ss_pred ccC
Q 013743 200 EKV 202 (437)
Q Consensus 200 ~~~ 202 (437)
+++
T Consensus 126 ~EI 128 (241)
T PF03102_consen 126 EEI 128 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 60
>PRK06683 hypothetical protein; Provisional
Probab=30.58 E-value=1.8e+02 Score=22.88 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHH-cccccCceEEEEecCCCCcchhhhHHHHHHHhCCeE
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLIL-NKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDL 190 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~-n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~i 190 (437)
.++.+++....+||++.|.++...+-+.. ....+ +++.-+ ...++|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~-Vpv~~~----------~t~~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHN-IPITKV----------ESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcC-CCEEEE----------CCHHHHHHHhCCcc
Confidence 45566666689999999999988776542 11112 223222 24588999998754
No 61
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=30.23 E-value=71 Score=29.05 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=32.7
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcHHHHHH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESEALAT 151 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~ 151 (437)
+.+|.++++|-|... .+.+.+.++.+.+.+..+|++..+.+.+...+
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 178 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL 178 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence 478889998887543 34566777776666778888888876555443
No 62
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=29.98 E-value=64 Score=31.27 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=42.5
Q ss_pred hHhhHhhHHHHHHHHHHcC---ccccchHHHHHHHHHHHhhcccchhHHHHHHHHHHHhhHHHHHHHHHcC
Q 013743 282 KKDRVTDALNATKAAVEEG---IVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAG 349 (437)
Q Consensus 282 ~~r~l~dAl~~~~~al~~g---vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG 349 (437)
-.|+++||+++++..++.- ++.|-|++...-+.-+..- +.+.+ ++......|.++||.
T Consensus 104 ~lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~~e-~Lst~---------es~~~~s~W~~~nCQ 164 (349)
T KOG1593|consen 104 DLRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFKEE-DLSTE---------ESKSWWSDWKAENCQ 164 (349)
T ss_pred hHHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCCcc-ccCCH---------HHHHHHHHHHHhcCC
Confidence 4789999999999999874 9999999998887766441 11111 233455678888885
No 63
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.75 E-value=72 Score=28.90 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=32.0
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcHHHHH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESEALA 150 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~~al~ 150 (437)
+.+|+++++|-|... .+.+.+.+..+.+.+..+|++..+.+.....
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~ 174 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFE 174 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHh
Confidence 478899999987543 3456667777666677888888887654434
No 64
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.78 E-value=2.1e+02 Score=28.69 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhhcCC--eEEEEecCCc-------------hhHHHHhHhhHhhHHHHHH-------
Q 013743 237 EQIRSAIENSTSDYDKEKLQERLAKLSGG--VAVLKIGGAS-------------EAEVGEKKDRVTDALNATK------- 294 (437)
Q Consensus 237 ~~l~~~l~~~~~~~~~~~l~~rl~rl~g~--~~tI~v~G~t-------------~~~l~E~~r~l~dAl~~~~------- 294 (437)
++++++..-.=++..-|++|..++..... -.++.|+|.. +.+.+=.+..+..-+..++
T Consensus 186 ~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~p 265 (326)
T PF06723_consen 186 RYIREKYNLLIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTP 265 (326)
T ss_dssp HHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHhhCcccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555543344456678888877654322 2355566542 1222212222222222222
Q ss_pred -----HHHHcC-ccccchHHHHHHHHHHHhhc
Q 013743 295 -----AAVEEG-IVPGGGVALLYAAKELEKLS 320 (437)
Q Consensus 295 -----~al~~g-vvpGGG~~e~~ls~~L~~~~ 320 (437)
-.+++| ++.|||+-.--+..+|++.-
T Consensus 266 Pel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~ 297 (326)
T PF06723_consen 266 PELAADILENGIVLTGGGALLRGLDEYISEET 297 (326)
T ss_dssp HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEChhhhhccHHHHHHHHH
Confidence 346789 99999998888888887643
No 65
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=26.33 E-value=91 Score=28.94 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=33.0
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESEALATL 152 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l 152 (437)
+.+|+++++|-|... .+++.+++..+.+.+..+|++.....+++..+.
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~ 211 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLF 211 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhC
Confidence 468899999987543 345666777666667778888888765555543
No 66
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=25.87 E-value=82 Score=29.30 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=31.2
Q ss_pred eecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 104 ELEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 104 ~l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
-+.+|+++++|.|... .+.+.+.+..+.+.|..+|++..+.+.
T Consensus 128 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3579999999988543 345677777776667788888877653
No 67
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=25.73 E-value=70 Score=28.18 Aligned_cols=43 Identities=5% Similarity=0.218 Sum_probs=31.0
Q ss_pred eecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 104 ELEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 104 ~l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
-+.+|+++++|-|... .+++.+.+..+.+.+..+|++..+.+.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3579999999998543 345677777766667778888777653
No 68
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=25.64 E-value=1.5e+02 Score=28.25 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCEEEEecC-CcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCC
Q 013743 126 VLELALKRQRPLLIVAED-VESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGG 188 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~-i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~ 188 (437)
=+|++...+++|||...+ ........|.+.++ +|..+....+.++ .+.++.++.++|-
T Consensus 64 n~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi----~v~~~~~~~~~~~-~~~i~~lg~~~g~ 122 (260)
T PRK03379 64 NLERIVALKPDLVLAWRGGNAERQVDQLASLGI----KVMWVDATSIEQI-ANALRQLAPWSPQ 122 (260)
T ss_pred CHHHHHhcCCCEEEEecCCCcHHHHHHHHHCCC----CEEEeCCCCHHHH-HHHHHHHHHHcCC
Confidence 377888899999987644 34556666765554 3666543232222 3456666666664
No 69
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.98 E-value=93 Score=30.09 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=37.2
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcHHHH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESEAL 149 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~~al 149 (437)
..+|.++++|-|... ..++++.|..+++.|+-++++..|++...-
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHh
Confidence 479999999999654 346889999999889999999999876543
No 70
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.62 E-value=2.7e+02 Score=21.71 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHH-cccccCceEEEEecCCCCcchhhhHHHHHHHhCCeE
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLIL-NKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDL 190 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~-n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~i 190 (437)
.++.|.+....+||++.|.++.....+.. ....+ +++.-+ ...++|+.++|-..
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~-Vp~~~~----------~s~~eLG~a~G~~~ 73 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKG-VPVSKV----------DSMKKLGKACGIEV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcC-CCEEEE----------CCHHHHHHHHCCCc
Confidence 44556666689999999999987655431 11112 223222 13478888888643
No 71
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=24.54 E-value=82 Score=29.72 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=29.3
Q ss_pred eecCceEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 104 ELEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 104 ~l~~p~Ill~d~~i~-----~~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
-+.+|+|+++|-|.+ +-..+.+++.++++.|+-+|+......
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~ 194 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ 194 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH
Confidence 468999999998744 445677788877777766655554443
No 72
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.52 E-value=87 Score=28.59 Aligned_cols=43 Identities=5% Similarity=0.111 Sum_probs=28.9
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcHH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESE 147 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~~ 147 (437)
+.+|.++++|-|-.. .+.+.+.++.+.+.+..+|++..+.+..
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 478888888887543 3356666666655567777777765544
No 73
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.86 E-value=92 Score=28.53 Aligned_cols=42 Identities=5% Similarity=0.091 Sum_probs=31.1
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|... .+++.+.+..+.+.|..+|++..+.+.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 478999999988543 345677777766668888888887654
No 74
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.82 E-value=86 Score=28.73 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=28.8
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|... .+.+.+.+..+.+.+..+|++..+.+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478889999987543 34566777766666777777777654
No 75
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=23.72 E-value=91 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=30.3
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|... .+.+.+.+..+.+.+..+|++..+.+
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 579999999998653 34566777777666777888888765
No 76
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=23.50 E-value=81 Score=28.84 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=29.2
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|-.. .+.+.+.+..+.+.|..++++..+.+.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 468899999987543 345667777776667777777776543
No 77
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=23.44 E-value=97 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.372 Sum_probs=28.8
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|... .+++...+..+.+.+..+|++..+.+
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468888888887543 34566777777666777777777665
No 78
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.16 E-value=1.9e+02 Score=26.85 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCEEEEecCCcHHH-HHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCC
Q 013743 126 VLELALKRQRPLLIVAEDVESEA-LATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGG 188 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~a-l~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~ 188 (437)
=+|+|.+.+++|||.....++.. ...|...++. +.........+ -.+.++.|+.++|.
T Consensus 49 n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~----v~~~~~~~~~~-~~~~~~~lg~~~g~ 107 (245)
T cd01144 49 DLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIP----VLVSEPQTLDD-ILADIRRLGTLAGR 107 (245)
T ss_pred CHHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCc----EEEeCCCCHHH-HHHHHHHHHHHhCC
Confidence 47888899999998876554443 6777666542 33332111111 24567788887776
No 79
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=23.09 E-value=1.1e+02 Score=29.21 Aligned_cols=73 Identities=15% Similarity=0.258 Sum_probs=47.2
Q ss_pred ecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCeEec
Q 013743 113 HEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLIT 192 (437)
Q Consensus 113 ~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~ 192 (437)
......+.+++.+.+..+.+.+..++++..+-+...+.+-...+ ...++ ++.||..++
T Consensus 89 ~~~~~~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~ldy~~~~~--~~~~~--------------------I~VGGn~Ls 146 (239)
T PF10593_consen 89 TDPDPPSWEEIKPELPKAISDGIEVVVVNSGSSDDSLDYDDGEN--LGLNV--------------------IAVGGNKLS 146 (239)
T ss_pred ccCCCcCHHHHHHHHHHHHhcCceEEEEeCCCcccccccccccc--CCceE--------------------EEECCcccc
Confidence 34456788899988887776678888888655554454432211 01123 345888888
Q ss_pred cCcCCccccCCcCCCcc
Q 013743 193 EELGMDLEKVNLDMLGT 209 (437)
Q Consensus 193 ~~~~~~~~~~~~~~lG~ 209 (437)
+ |+|++.+..+++.+
T Consensus 147 R--GlTleGL~vsYf~R 161 (239)
T PF10593_consen 147 R--GLTLEGLTVSYFLR 161 (239)
T ss_pred C--ceeECCcEEEEecC
Confidence 8 88888887666664
No 80
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=22.67 E-value=97 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=30.3
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|... .+++.+.+..+.+.|..+|++..+.+
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578999999988543 34567777777666778888888775
No 81
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.59 E-value=94 Score=28.64 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=25.3
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|.++++|-+-.. .+.+.+.+..+.+.+..+|++..+.++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 467777777776443 234555666555556666666665543
No 82
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=22.27 E-value=90 Score=28.61 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=28.0
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|-.. .+.+.+.+..+.+.+..+|++..+.+.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 468888888887543 334666666666556677777777553
No 83
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=22.04 E-value=1e+02 Score=28.70 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=29.8
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|.++++|-|-.. .+.+.+.+..+.+.|..+|++..+.+.
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 468889998987543 345667777776667778888887664
No 84
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=21.85 E-value=95 Score=29.03 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=30.1
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|... .+.+.+.+..+.+.|..+|++..+.+.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 478999999988543 345677777776667778888777653
No 85
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.81 E-value=1.1e+02 Score=27.34 Aligned_cols=41 Identities=12% Similarity=0.388 Sum_probs=28.2
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|.++++|-|... .+.+.+.+..+.+.+..+|++..+.+
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478899999987543 34566677766655677777777653
No 86
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.60 E-value=1.1e+02 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=29.1
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|.+. .+.+.+.+....+.|..+|++..+.+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478899999987543 34566777766655777888877754
No 87
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=21.55 E-value=97 Score=28.67 Aligned_cols=41 Identities=7% Similarity=0.242 Sum_probs=26.1
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|... .+.+.+.+..+.+.|..+|++..+.+
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 467888888877543 33456666666555666777766654
No 88
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=21.53 E-value=90 Score=29.68 Aligned_cols=42 Identities=14% Similarity=0.383 Sum_probs=30.9
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|.++++|-|... .+.+.+.+..+.+.|..+|++..+.+.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~ 214 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 579999999988543 345677777776668888888887653
No 89
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.50 E-value=1e+02 Score=28.84 Aligned_cols=41 Identities=10% Similarity=0.316 Sum_probs=27.5
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+|+++|-|... .+.+.+.+..+.+.|..+|++..+.+
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 468888888887543 33466666666666777777776654
No 90
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=21.48 E-value=95 Score=29.26 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=27.5
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|-.. .+.+.+.++.+.+.|..+|++..+.+.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 468888888887443 345666666666556677777776543
No 91
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.32 E-value=90 Score=28.44 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=29.5
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|.++++|-|... .+.+.+.+..+.+.|..+|++..+.+.
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 468899999988543 345666777666667778888777654
No 92
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=20.89 E-value=98 Score=29.08 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=29.8
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+|+++|-|.+. .+.+.+.+..+.+.+..+|++..+.+
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578999999988554 34566677777666777888887755
No 93
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.88 E-value=91 Score=28.48 Aligned_cols=42 Identities=14% Similarity=0.355 Sum_probs=29.9
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|-+. .+.+.+.++.+.+.+..+|++..+.+.
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 478999999988543 345667777766667777788777653
No 94
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=20.80 E-value=3.2e+02 Score=24.95 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=38.7
Q ss_pred HHHHHhcCCCEEEEecCC-cHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCCe
Q 013743 127 LELALKRQRPLLIVAEDV-ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 189 (437)
Q Consensus 127 le~i~~~~~~lvi~~~~i-~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ 189 (437)
+|++...+++|||..... .......+....+ +++.+.......--.+.++.++.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~i----p~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGI----PVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTS----EEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccc----eEEEeecccchHHHHHHHHHHHHhcccH
Confidence 578888999999988877 5555555555554 4777765443123357888888888874
No 95
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=20.64 E-value=1.1e+02 Score=28.69 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=29.0
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|.++++|-|... .+++.+++..+++.+..+|++..+.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 468888888887543 345666776666567777777777654
No 96
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=20.62 E-value=1.1e+02 Score=27.96 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=27.6
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|.++++|-|-.. .+.+...+..+.+.+..+|++..+.+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 468888888887443 34566667766666667777776655
No 97
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.57 E-value=2.8e+02 Score=25.84 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccCceEEEEecCCCCcchhhhHHHHHHHhCC
Q 013743 126 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGG 188 (437)
Q Consensus 126 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~~~v~aV~~~~~~~~~~~~le~la~~tG~ 188 (437)
=+|+|...+++|||+.....+ ....|.+.+ .++.+.. ...++ .+.++.++.++|-
T Consensus 58 ~~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~-----p~~~~~~-~~~~~-~~~i~~lg~~~g~ 112 (248)
T cd01138 58 NLEKVLELKPDLIIVSSKQEE-NYEKLSKIA-----PTVPVSY-NSSDW-EEQLKEIGKLLNK 112 (248)
T ss_pred CHHHHhccCCCEEEeCCccHH-HHHHHHhhC-----CEEEEcC-CCCCH-HHHHHHHHHHhCc
Confidence 478888999999998776554 555554322 2445543 33444 4667777777765
No 98
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=20.30 E-value=1e+02 Score=29.59 Aligned_cols=42 Identities=7% Similarity=0.251 Sum_probs=28.7
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCcH
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 146 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~~ 146 (437)
+.+|+++++|-|... .+.+.+++..+++.|..+|++..+.+.
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 468888888887543 345667777666667777777776653
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=20.16 E-value=1.1e+02 Score=27.92 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=29.2
Q ss_pred ecCceEEEecccCCC-----HHHHHHHHHHHHhcCCCEEEEecCCc
Q 013743 105 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 145 (437)
Q Consensus 105 l~~p~Ill~d~~i~~-----~~~l~~~le~i~~~~~~lvi~~~~i~ 145 (437)
+.+|+++++|-|-.. .+.+.+.+..+.+.+..+|++..+.+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~ 197 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 578999999988543 34566777766656777888877754
No 100
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=20.03 E-value=1.6e+02 Score=31.40 Aligned_cols=43 Identities=12% Similarity=0.328 Sum_probs=35.9
Q ss_pred ecCceEEEecccC-----CCHHHHHHHHHHHHhcCCCEEEEecCCcHH
Q 013743 105 LEDPLILVHEKKI-----SNLTAVVRVLELALKRQRPLLIVAEDVESE 147 (437)
Q Consensus 105 l~~p~Ill~d~~i-----~~~~~l~~~le~i~~~~~~lvi~~~~i~~~ 147 (437)
..+|+||++|.|- ..-.+++.++..+.+.|..+|++..+.++.
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEl 464 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 4799999999984 344689999999999999999988877655
No 101
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=20.02 E-value=1.3e+02 Score=31.67 Aligned_cols=42 Identities=12% Similarity=0.297 Sum_probs=25.1
Q ss_pred cCceEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEecCCcHH
Q 013743 106 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVESE 147 (437)
Q Consensus 106 ~~p~Ill~d~~i~-----~~~~l~~~le~i~~~~~~lvi~~~~i~~~ 147 (437)
.+|+|+++|-|-. +.+++.+.++.+.+.|..+|++..+.+..
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~ 454 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPEL 454 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 5677777776633 33455566666555566666666666443
Done!