BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013746
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 251/458 (54%), Gaps = 53/458 (11%)
Query: 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXLT 74
DG + ++L ++GVVGIPVT +A A G+R+I F +EQ LT
Sbjct: 9 DGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLT 68
Query: 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVEAVK 132
KPGI LTVS PG ++GL L+N +N +P++MISGS D+ D +GD++ELDQ+ A K
Sbjct: 69 QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAK 128
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXX 192
P++K A + ++ +A+ + +VSGRPGG YLDLP +VL T+
Sbjct: 129 PYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVE 188
Query: 193 XXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
+ + A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES IPFLP
Sbjct: 189 NPSPALLP---CPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245
Query: 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA- 311
M KG+L DTHPL+A AARS A+ DV ++VGARLNWLL G+ W+ D +F+ +D
Sbjct: 246 SMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIE 304
Query: 312 --------------------------------------IWK-----KTKDNVLKMEVQLA 328
+W+ + N KM +L+
Sbjct: 305 PQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLS 364
Query: 329 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 388
D P N+ + +RD + + LV+EGANT+D R ++ +PR RLD GTWG
Sbjct: 365 TDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGV 422
Query: 389 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
MG+G+GY I A++ VVA+EGDS FGFS +E+E
Sbjct: 423 MGIGMGYAIGASVTSGSP-VVAIEGDSAFGFSGMEIET 459
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 170/470 (36%), Positives = 256/470 (54%), Gaps = 55/470 (11%)
Query: 6 LQNSQNAQI-DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXX 64
+ N N ++ DG + +L + M+GVVGIP+T+LA G RF +F +EQ
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 65 XXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDF 122
+ GKPG+ LTVS PG ++G+ L++ N +P++++SGS +++ D +GD+
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 123 QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVX 182
+E+DQ+ +P K + + I ++P +A+ + AVSGRPGG Y+DLP + QTISV
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVE 180
Query: 183 XXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242
I +A L+K AK+P+I+ GKGAAYA+ + E++ LV
Sbjct: 181 EANKLLFKPIDPAPAQIP---AEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALV 237
Query: 243 ESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 302
E TGIPFLP M KGLLPD HP +A A R+ A+ QCDV +++GARLNWL+ G+ W
Sbjct: 238 EETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGD 297
Query: 303 DV-KFVLVD-------------------------------------------AIWKKTKD 318
++ K+V +D A+ K
Sbjct: 298 ELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDG 357
Query: 319 NVLKMEVQLAKDVVP--FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTE 376
N K+ ++ + N+ + ++RD +L +P LV+EGAN +D R ++ +
Sbjct: 358 NKAKLAGKMTAETPSGMMNYSNSLGVVRDFML--ANPDISLVNEGANALDNTRMIVDMLK 415
Query: 377 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
PR RLD+GTWG MG+G+GYC+AAA A + V+AVEGDS FGFS +E+E
Sbjct: 416 PRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELET 464
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 178/420 (42%), Gaps = 54/420 (12%)
Query: 52 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
+R + +EQ +GKPGI + SGPG + ++GL++ ++++ P+V I+G
Sbjct: 50 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 109
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
++ G FQE VE + +K D+ ++P+ + + A SGRPG +D+P
Sbjct: 110 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVP 169
Query: 172 TDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAY 231
D+ Q + + +S +++ V L+ E+KKP++ G G
Sbjct: 170 KDIQQQ---LAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGC-- 224
Query: 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVV 284
+ EL + VE TGIP T MG G P L+ T + A+ D+ L
Sbjct: 225 LNSSDELGRFVELTGIPVATTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAF 284
Query: 285 GARLN--------------WLLHF---------GEPPKWS--KDVKFVL--VDAIWKKTK 317
G R + ++H + P S DVK L ++ + +
Sbjct: 285 GVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRA 344
Query: 318 DN------VLKMEVQLAKDVVPFNFMT------PMRIIRDAILGVGSPAPILVSEGANTM 365
+ V + E+ + K P +F T P I+ +L + ++S G
Sbjct: 345 EELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIK--VLDELTDGKAIISTGVGQH 402
Query: 366 DVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424
+ A +PR L +G G MG GL I A++A P+ +VV ++GD F + E+
Sbjct: 403 QMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQEL 462
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 178/420 (42%), Gaps = 54/420 (12%)
Query: 52 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
+R + +EQ +GKPGI + SGPG + ++GL++ ++++ P+V I+G
Sbjct: 51 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 110
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
++ G FQE VE + +K D+ ++P+ + + A SGRPG +D+P
Sbjct: 111 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170
Query: 172 TDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAY 231
D+ Q + + +S +++ V L+ E+KKP++ G G
Sbjct: 171 KDIQQQ---LAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGC-- 225
Query: 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVV 284
+ EL + VE TGIP T MG G P L+ T + A+ D+ L
Sbjct: 226 LNSSDELGRFVELTGIPVASTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAF 285
Query: 285 GARLN--------------WLLHF---------GEPPKWS--KDVKFVL--VDAIWKKTK 317
G R + ++H + P S DVK L ++ + +
Sbjct: 286 GVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRA 345
Query: 318 DN------VLKMEVQLAKDVVPFNFMT------PMRIIRDAILGVGSPAPILVSEGANTM 365
+ V + E+ + K P +F T P I+ +L + ++S G
Sbjct: 346 EELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIK--VLDELTDGKAIISTGVGQH 403
Query: 366 DVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424
+ A +PR L +G G MG GL I A++A P+ +VV ++GD F + E+
Sbjct: 404 QMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQEL 463
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 109/438 (24%), Positives = 169/438 (38%), Gaps = 75/438 (17%)
Query: 53 RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSC 112
F+ +EQ +GKPG++L SGPG + + +++ + P+V+ +G
Sbjct: 75 NFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQV 134
Query: 113 DQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172
G FQE D V + +K+ V K + E+P + + E A SGRPG +DLP
Sbjct: 135 PTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 194
Query: 173 DVLHQTIS--VXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA- 229
DV + + + Q V I+KA L+ AKKP++ G G
Sbjct: 195 DVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGIL 254
Query: 230 AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVAL 282
+A LK+L + IP T G G P + A +LA+ D+ +
Sbjct: 255 NHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLII 314
Query: 283 VVGARLN-----------------------WLLHFGEPPKWSKDVKFVLVDAIWKKTKDN 319
VGAR + ++HF PK V + A+ N
Sbjct: 315 AVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQI-AVEGDATTN 373
Query: 320 VLKM---------------EVQLAKDVVPFNFM--TPMRIIRDAILGVGSPAPILVSEGA 362
+ KM ++ K P+ +M TP I+ P ++
Sbjct: 374 LGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIK--------PQTVIKKLSK 425
Query: 363 NTMDVGRAVLVQT----------------EPRCRLDAGTWGTMGVGLGYCIAAAIACPER 406
D GR V+V T P + +G GTMG GL I A +A PE
Sbjct: 426 VANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPES 485
Query: 407 LVVAVEGDSGFGFSAVEV 424
LV+ ++GD+ F + E+
Sbjct: 486 LVIDIDGDASFNMTLTEL 503
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/438 (24%), Positives = 169/438 (38%), Gaps = 75/438 (17%)
Query: 53 RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSC 112
F+ +EQ +GKPG++L SGPG + + +++ + P+V+ +G
Sbjct: 122 NFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQV 181
Query: 113 DQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172
G FQE D V + +K+ V K + E+P + + E A SGRPG +DLP
Sbjct: 182 PTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241
Query: 173 DVLHQTIS--VXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA- 229
DV + + + Q V I+KA L+ AKKP++ G G
Sbjct: 242 DVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGIL 301
Query: 230 AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVAL 282
+A LK+L + IP T G G P + A +LA+ D+ +
Sbjct: 302 NHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLII 361
Query: 283 VVGARLN-----------------------WLLHFGEPPKWSKDVKFVLVDAIWKKTKDN 319
VGAR + ++HF PK V + A+ N
Sbjct: 362 AVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQI-AVEGDATTN 420
Query: 320 VLKM---------------EVQLAKDVVPFNFM--TPMRIIRDAILGVGSPAPILVSEGA 362
+ KM ++ K P+ +M TP I+ P ++
Sbjct: 421 LGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIK--------PQTVIKKLSK 472
Query: 363 NTMDVGRAVLVQT----------------EPRCRLDAGTWGTMGVGLGYCIAAAIACPER 406
D GR V+V T P + +G GTMG GL I A +A PE
Sbjct: 473 VANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPES 532
Query: 407 LVVAVEGDSGFGFSAVEV 424
LV+ ++GD+ F + E+
Sbjct: 533 LVIDIDGDASFNMTLTEL 550
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 125/293 (42%), Gaps = 18/293 (6%)
Query: 28 GATHMFGVVGIPVTSLANRAVQLG-VRFI-AFHNEQXXXXXXXXXXXLTGKPGILLTVSG 85
G T FGV G + + + G +R I A H E G G+ L SG
Sbjct: 41 GITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGASHXAEGYTRATAGNIGVCLGTSG 100
Query: 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDIT 145
P + L + ++ PI+ I+G + + DFQ +D KP SK AV ++
Sbjct: 101 PAGTDXITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKXAVTVREAA 160
Query: 146 EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVN 205
VP+ + Q SGRPG +DLP DV I + Q
Sbjct: 161 LVPRVLQQAFHLXRSGRPGPVLVDLPFDVQVAEIEFDPDXYEPLPVYKPAASRXQ----- 215
Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
I+KAV L +A++P+IV G G A A L++ E T +P +PT G G +PD H L
Sbjct: 216 --IEKAVEXLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLXGWGCIPDDHEL 273
Query: 266 AA------TAAR--SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
A TA R + + D +G R H G K+++ K V +D
Sbjct: 274 XAGXVGLQTAHRYGNATLLASDXVFGIGNRFAN-RHTGSVEKYTEGRKIVHID 325
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 8/242 (3%)
Query: 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXLTG 75
G L L G +FG+ G + + + + +R I +E +TG
Sbjct: 13 GADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITG 72
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
K G+ L SGPGC + + G++ P+V + G+ + D + Q +D V P +
Sbjct: 73 KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVT 132
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXX 195
K+A++ + + V+ A GRPG ++ LP DV+ +S
Sbjct: 133 KYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVS--------GKVLPAS 184
Query: 196 XTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
G + ID+ L+ +AK P+ + G A+ L++L+E++ IP T
Sbjct: 185 GAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQA 244
Query: 256 KG 257
G
Sbjct: 245 AG 246
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 337 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 396
+ P+RI+R V S + V G+ + + R L R + + TMGV L +
Sbjct: 371 LHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIAR-YLYTFRARQVMISNGQQTMGVALPWA 429
Query: 397 IAAAIACPERLVVAVEGDSGFGFSAVEVE 425
I A + PER VV+V GD GF S++E+E
Sbjct: 430 IGAWLVNPERKVVSVSGDGGFLQSSMELE 458
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 177/451 (39%), Gaps = 76/451 (16%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +G H++G+ G + S+ + A + + +I +E+ LTGK G+
Sbjct: 11 KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 70
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H + GL + + P++ + G FQE+++ + + V
Sbjct: 71 CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 130
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
A + +P + + + RA + + G + +P D+ Q IS
Sbjct: 131 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQISAEDWYASANNY-------- 181
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
Q ++ +AV+ L + A++PLI +G GA +A EL++L ++ IP + T
Sbjct: 182 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 239
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF-- 306
KG++ D +P +A + A+ Q DV L VG F E K K+ ++
Sbjct: 240 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 295
Query: 307 ------------------VLVDAI------------------WKKTKDNVLKMEVQLA-- 328
VL DA W+ NV LA
Sbjct: 296 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASL 355
Query: 329 --KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCRLDAGT 385
K P +R A+ + P I + G ++ R + + R + +
Sbjct: 356 EDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNR-HITSNL 410
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSG 416
+ TMGVG+ IAA + PER V + GD G
Sbjct: 411 FATMGVGIPGAIAAKLNYPERQVFNLAGDGG 441
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 109/469 (23%), Positives = 185/469 (39%), Gaps = 72/469 (15%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +G H++G+ G + S+ + A + + +I +E+ LTGK G+
Sbjct: 19 KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 78
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H + GL + + P++ + G FQE+++ + + V
Sbjct: 79 CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 138
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
A + +P + + + RA + + G + +P D+ Q I
Sbjct: 139 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 189
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
Q ++ +AV+ L + A++PLI +G GA +A EL++L ++ IP + T
Sbjct: 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 247
Query: 256 KGLLPDTHPL-------AATAARSLAIGQCDVALVVGARL------------NWLLHFG- 295
KG++ D +P AA + A+ Q DV L VG + L
Sbjct: 248 KGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDI 307
Query: 296 EPPKWSKDVKF---VLVDAI------------------WKKTKDNVLKMEVQLA----KD 330
+P K K K VL DA W+ NV LA K
Sbjct: 308 DPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQ 367
Query: 331 VVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCRLDAGTWGTM 389
P +R A+ + P I + G ++ R + + R + + + TM
Sbjct: 368 EGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNR-HITSNLFATM 422
Query: 390 GVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCIIMI 434
GVG+ IAA + PER V + GD G + A +V+ L I ++
Sbjct: 423 GVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVV 471
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/473 (22%), Positives = 185/473 (39%), Gaps = 80/473 (16%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +G H++G+ G + S+ + A + + +I +E+ LTGK G+
Sbjct: 19 KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 78
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H + GL + + P++ + G FQE+++ + + V
Sbjct: 79 CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 138
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
A + +P + + + RA + + G + +P D+ Q I
Sbjct: 139 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 189
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
Q ++ +AV+ L + A++PLI +G GA +A EL++L ++ IP + T
Sbjct: 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 247
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF-- 306
KG++ D +P +A + A+ Q DV L VG F E K K+ ++
Sbjct: 248 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 303
Query: 307 ------------------VLVDAI------------------WKKTKDNVLKMEVQLA-- 328
VL DA W+ NV LA
Sbjct: 304 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASL 363
Query: 329 --KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCRLDAGT 385
K P +R A+ + P I + G ++ R + + R + +
Sbjct: 364 EDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNR-HITSNL 418
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCIIMI 434
+ TMGVG+ IAA + PER V + GD G + A +V+ L I ++
Sbjct: 419 FATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVV 471
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/473 (22%), Positives = 185/473 (39%), Gaps = 80/473 (16%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +G H++G+ G + S+ + A + + +I +E+ LTGK G+
Sbjct: 19 KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 78
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H + GL + + P++ + G FQE+++ + + V
Sbjct: 79 CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 138
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
A + +P + + + RA + + G + +P D+ Q I
Sbjct: 139 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 189
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
Q ++ +AV+ L + A++PLI +G GA +A EL++L ++ IP + T
Sbjct: 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 247
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF-- 306
KG++ D +P +A + A+ Q DV L VG F E K K+ ++
Sbjct: 248 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 303
Query: 307 ------------------VLVDAI------------------WKKTKDNVLKMEVQLA-- 328
VL DA W+ NV LA
Sbjct: 304 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASL 363
Query: 329 --KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCRLDAGT 385
K P +R A+ + P I + G ++ R + + R + +
Sbjct: 364 EDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNR-HITSNL 418
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCIIMI 434
+ TMGVG+ IAA + PER V + GD G + A +V+ L I ++
Sbjct: 419 FATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVV 471
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/473 (22%), Positives = 185/473 (39%), Gaps = 80/473 (16%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +G H++G+ G + S+ + A + + +I +E+ LTGK G+
Sbjct: 11 KVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGV 70
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H + GL + + P++ + G FQE+++ + + V
Sbjct: 71 CFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV 130
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
A + +P + + + RA + + G + +P D+ Q I
Sbjct: 131 TAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPA--------EDWYASANSY 181
Query: 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
Q ++ +AV+ L + A++PLI +G GA +A EL++L ++ IP + T
Sbjct: 182 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPA 239
Query: 256 KGLLPDTHPLAATAARSL-------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF-- 306
KG++ D +P +A + A+ Q DV L VG F E K K+ ++
Sbjct: 240 KGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYP----FAEVSKAFKNTRYFL 295
Query: 307 ------------------VLVDAI------------------WKKTKDNVLKMEVQLA-- 328
VL DA W+ NV LA
Sbjct: 296 QIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASL 355
Query: 329 --KDVVPFNFMTPMRIIRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCRLDAGT 385
K P +R A+ + P I + G ++ R + + R + +
Sbjct: 356 EDKQEGPLQAYQVLR----AVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNR-HITSNL 410
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS----AVEVEVWLSCIIMI 434
+ TMGVG+ IAA + PER V + GD G + A +V+ L I ++
Sbjct: 411 FATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVV 463
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 24/290 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
A I G L ++L G H+FG+ G + ++ + V I +E
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGXHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72 XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
K G+ L +G G + + ++N ++ P++ ++GS +D Q +DQV
Sbjct: 62 RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
P +K+A + +P+ V Q + A+S G LDLP D+L I
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
+D+D+A++LL++A++P+IV G A+ + L V +TG+P
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288
LP M GL+ + + A A D+ L++GAR
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARF 280
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 357 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGD 414
+V++GA T V+ + +P L G G+MGVG G + A +A E R + V GD
Sbjct: 389 VVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGD 448
Query: 415 SGFGFSAVEVE 425
G+S E +
Sbjct: 449 GSVGYSIGEFD 459
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 24/290 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
A I G L ++L G H+FG+ G + ++ + V I +E
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72 XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
K G+ L +G G + + ++N ++ P++ ++GS +D Q +DQV
Sbjct: 62 RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
P +K+A + +P+ V Q + A+S G LDLP D+L I
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
+D+D+A++LL++A++P+IV G A+ + L V +TG+P
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288
LP M GL+ + + A A D+ L++GAR
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARF 280
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 357 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGD 414
+V++GA T V+ + +P L G G+MGVG G + A +A E R + V GD
Sbjct: 389 VVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGD 448
Query: 415 SGFGFSAVEVE 425
G+S E +
Sbjct: 449 GSVGYSIGEFD 459
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 24/290 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
A I G L ++L G H+FG+ G + ++ + V I +E
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72 XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
K G+ L +G G + + ++N ++ P++ ++GS +D Q +DQV
Sbjct: 62 RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
P +K+A + +P+ V Q + A+S G LDLP D+L I
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
+D+D+A++LL++A++P+IV G A+ + L V +TG+P
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288
LP M GL+ + + A A D+ L++GAR
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARF 280
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 357 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGD 414
+V++GA T V+ + +P L G G+MGVG G + A +A E R + V GD
Sbjct: 389 VVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGD 448
Query: 415 SGFGFSAVEVE 425
G+S E +
Sbjct: 449 GSVGYSIGEFD 459
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 24/290 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
A I G L ++L G H+FG+ G + ++ + V I +E
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72 XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
K G+ L +G G + + ++N ++ P++ ++GS +D Q +DQV
Sbjct: 62 RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
P +K+A + +P+ V Q + A+S G LDLP D+L I
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
+D+D+A++LL++A++P+IV G A+ + L V +TG+P
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288
LP M GL+ + + A A D+ L++GAR
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARF 280
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 357 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGD 414
+V++GA T V+ + +P L G G+MGVG G + A +A E R + V GD
Sbjct: 389 VVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGD 448
Query: 415 SGFGFSAVEVE 425
G+S E +
Sbjct: 449 GSVGYSIGEFD 459
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 24/290 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
A I G L ++L G H+FG+ G + ++ + V I +E
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGSHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72 XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
K G+ L +G G + + ++N ++ P++ ++GS +D Q +DQV
Sbjct: 62 RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAM 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
P +K+A + +P+ V Q + A+S G LDLP D+L I
Sbjct: 122 AAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
+D+D+A++LL++A++P+IV G A+ + L V +TG+P
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288
LP M GL+ + + A A D+ L++GAR
Sbjct: 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAP------DLVLMLGARF 280
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 357 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGD 414
+V++GA T V+ + +P L G G+MGVG G + A +A E R + V GD
Sbjct: 389 VVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGD 448
Query: 415 SGFGFSAVEVE 425
G+S E +
Sbjct: 449 GSVGYSIGEFD 459
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 24/290 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXX 71
A I G L ++L G H+FG+ G + ++ + V I +E
Sbjct: 2 AXITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYA 61
Query: 72 XLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA 130
K G+ L +G G + + ++N ++ P++ ++GS +D Q +DQV
Sbjct: 62 RAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAX 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXX 190
P +K+A + +P+ V Q + A+S G LDLP D+L I
Sbjct: 122 AAPITKWAHRVXATEHIPRLVXQAIRAALSAPRGPVLLDLPWDILXNQIDEDSVIIPDLV 181
Query: 191 XXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF- 249
+D+D+A++LL++A++P+IV G A+ + L V +TG+P
Sbjct: 182 LSAHGARPDP-----ADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236
Query: 250 -----------LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288
LP GL+ + + A A D+ L +GAR
Sbjct: 237 ADYEGLSXLSGLPDAXRGGLVQNLYSFAKADAAP------DLVLXLGARF 280
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 357 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGD 414
+V++GA T V + +P L G G+ GVG G + A +A E R + V GD
Sbjct: 389 VVADGALTYLWLSEVXSRVKPGGFLCHGYLGSXGVGFGTALGAQVADLEAGRRTILVTGD 448
Query: 415 SGFGFSAVEVE 425
G+S E +
Sbjct: 449 GSVGYSIGEFD 459
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANR--AVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +GA ++G+ ++SL + + V+F+ +E+ G G+
Sbjct: 11 KILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGV 70
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+ GPG H + GL + ++ P+V I GS Q++ FQEL+Q + +
Sbjct: 71 TVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNR 130
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
+ ++PK V + A++ R G L++P D I
Sbjct: 131 RVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSANSLRKYAPIAP 189
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLI-----VFGKGAAYARAEGELKKLVESTGIPF 249
DID AV LL +K+P+I G G A ++K V +TG F
Sbjct: 190 AA----QDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNF 240
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANR--AVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
K L +GA ++G+ ++SL + + V+F+ +E+ G G+
Sbjct: 12 KILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGV 71
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+ GPG H + GL + ++ P+V I GS Q++ FQEL+Q + +
Sbjct: 72 TVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNR 131
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVT 199
+ ++PK V + A++ R G L++P D I
Sbjct: 132 RVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSANSLRKYAPIAP 190
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLI-----VFGKGAAYARAEGELKKLVESTGIPF 249
DID AV LL +K+P+I G G A ++K V +TG F
Sbjct: 191 AA----QDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNF 241
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 18/216 (8%)
Query: 104 PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163
P V I + D + GR + + ++ P ++ + + + +V + + + R G P
Sbjct: 96 PAVHIGLNSDGRLAGRSEAAQQVPWQSFTPIARSTQRVERLDKVGEAIHEAF-RVAEGHP 154
Query: 164 GG-CYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPL 222
G Y+D+P D+ I N D+ +A + L AK P+
Sbjct: 155 AGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLHAP-----NEDVREAAAQLVAAKNPV 209
Query: 223 IVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA-------RSLAI 275
I+ G G A + L KL E G+P + T G G+ P+TH LA +A + +
Sbjct: 210 ILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMM 269
Query: 276 GQCDVALVVGARL-NWLLHFGEPPKWSKDVKFVLVD 310
D LV+G+RL +W + G +K KFV VD
Sbjct: 270 AAADFVLVLGSRLSDWGIAQG---YITKMPKFVHVD 302
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Query: 51 GVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
G+ F+ +E +TG+P GPG + G++ +++ P++ ++
Sbjct: 48 GIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAA 107
Query: 111 SCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169
+ D F Q LD V V P SK+AV+ + E+ V + A++ G ++
Sbjct: 108 QSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFIS 167
Query: 170 LPTDVL--HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGK 227
LP D+L + I V G +D +A +LL EAK P++V G
Sbjct: 168 LPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAAD--QAAALLAEAKHPVLVVGA 225
Query: 228 GAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
A + A ++ L E IP + T + KG+LP H L
Sbjct: 226 AAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHEL 263
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 5/218 (2%)
Query: 51 GVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
G+ F+ +E +TG+P GPG + G++ +++ P++ ++
Sbjct: 48 GIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALAA 107
Query: 111 SCDQKD-FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169
+ D F Q LD V V P SK+AV+ + E+ V + A + G ++
Sbjct: 108 QSESHDIFPNDTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAXTEPVGPSFIS 167
Query: 170 LPTDVL--HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGK 227
LP D+L + I V G +D +A +LL EAK P++V G
Sbjct: 168 LPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAAD--QAAALLAEAKHPVLVVGA 225
Query: 228 GAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
A + A ++ L E IP + T + KG+LP H L
Sbjct: 226 AAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHEL 263
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ + S+ DI P + + + VS RP YL LP +++
Sbjct: 117 LGNGDFTVFHRMSS--NISETTAMITDINTAPAEIDRCIRTTYVSQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
T+ + + I+ + L+KEAK P+I+ + A+
Sbjct: 173 DLTVPASLLDTPIDLSLKPNDPEAEEEV----IENVLQLIKEAKNPVILADACCSRHDAK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP---------LAATAARSLAIGQCDVALVVGA 286
E KKL++ T P TPMGKG + + HP L++ A + A+ D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEKHPRFGGVYVGTLSSPAVKE-AVESADLVLSVGA 287
Query: 287 RLN 289
L+
Sbjct: 288 LLS 290
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 62 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 121
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 122 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 181
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 182 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 235
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 236 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 294
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 295 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 350
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 351 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 410
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 411 GVQLAEPERQVIAVIGDGSANYS 433
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 62 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 121
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 122 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 181
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 182 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 235
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 236 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 294
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 295 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 350
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 351 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 410
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 411 GVQLAEPERQVIAVIGDGSANYS 433
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 136/383 (35%), Gaps = 49/383 (12%)
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPF 134
KP + S G + + LSN + P+++ +G + G +D +P
Sbjct: 63 KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPL 122
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXX 194
K++ + EVP +++ + A G YL +P D +
Sbjct: 123 VKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSS 182
Query: 195 XXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
Q D+D V L A P IV G A A + L E P P
Sbjct: 183 VRLNDQ------DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPS 236
Query: 255 G-KGLLPDTHPL------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD---- 303
+ P HP A AA S + DV LV+GA + + H +P ++ K
Sbjct: 237 APRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPV-FRYHQYDPGQYLKPGTRL 295
Query: 304 ----------VKFVLVDAIWKK--TKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 351
+ + DAI + L V+ + +P P ++ +DA G
Sbjct: 296 ISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA----G 351
Query: 352 SPAPILVSEGANTMDVGRAVLVQTEPRC------RLDAGTWGTMGV----GLGYCIAAAI 401
P V + N M A+ + RL+ G+ GLG+ + AAI
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI 411
Query: 402 ----ACPERLVVAVEGDSGFGFS 420
A PER V+AV GD +S
Sbjct: 412 GVQLAEPERQVIAVIGDGSANYS 434
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
AK+L G ++GV G + L++ ++G + +++ +E+ L+G+ +
Sbjct: 10 AKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAV 69
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
GPG +H + GL + N P++ I+ + G G FQE E + S +
Sbjct: 70 CAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCE 129
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
++P+ +A + +AV R G + LP DV
Sbjct: 130 LVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDV 163
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ A S+ DI P + + + V+ RP YL LP +++
Sbjct: 116 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 171
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ ++ + ID ++L+K+AK P+I+ + +
Sbjct: 172 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILALVKDAKNPVILADACCSRHDVK 227
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
E KKL++ T P TPMGKG + + HP T ++ A+ D+ L VGA
Sbjct: 228 AETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 287
Query: 288 LN 289
L+
Sbjct: 288 LS 289
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ A S+ DI P + + + V+ RP YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ ++ + ID ++L+K+AK P+I+ + +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILALVKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
E KKL++ T P TPMGKG + + HP T ++ A+ D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
L+
Sbjct: 289 LS 290
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGI 79
AK+L G ++GV G + L++ ++G + +++ +E+ L+G+ +
Sbjct: 10 AKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAV 69
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
GPG +H + GL + N P++ I+ + G G FQE E + S +
Sbjct: 70 CAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCE 129
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
++P+ +A + +AV R G + LP DV
Sbjct: 130 LVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDV 163
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ A S+ DI P + + + V+ RP YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ ++ + ID ++L+K+AK P+I+ + +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILALVKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
E KKL++ T P TPMGKG + + HP T ++ A+ D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
L+
Sbjct: 289 LS 290
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ A S+ DI P + + + V+ RP YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ ++ + ID + L+K+AK P+I+ + +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILVLIKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
E KKL++ T P TPMGKG + + HP T ++ A+ D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
L+
Sbjct: 289 LS 290
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ A S+ DI P + + + V+ RP YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ ++ + ID + L K+AK P+I+ + +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILVLDKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
E KKL++ T P TPMGKG + + HP T ++ A+ D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
L+
Sbjct: 289 LS 290
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVL 175
G GDF ++ A S+ DI P + + + V+ RP YL LP +++
Sbjct: 117 LGNGDFTVFHRMSA--NISETTAMITDIATAPAEIDRCIRTTYVTQRP--VYLGLPANLV 172
Query: 176 HQTISVXXXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ ++ + ID + L K+AK P+I+ + +
Sbjct: 173 DLNVPAKLLQTPIDMSLKPNDAESEKEV----IDTILVLDKDAKNPVILADACCSRHDVK 228
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP-----LAATAAR---SLAIGQCDVALVVGAR 287
E KKL++ T P TPMGKG + + HP T ++ A+ D+ L VGA
Sbjct: 229 AETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGAL 288
Query: 288 LN 289
L+
Sbjct: 289 LS 290
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 23/202 (11%)
Query: 74 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK----------DFGRGDFQ 123
T K LT G G + + GL+ P+V I GS K GDF+
Sbjct: 85 TKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFK 144
Query: 124 ELDQVEAVKPFSKFAVKAKDIT-EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVX 182
++ ++ + A++ T E+ + ++Q+L+ +P Y++LP DV +
Sbjct: 145 HFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKER---KP--VYINLPVDV----AAAK 195
Query: 183 XXXXXXXXXXXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242
T T ++ S I+++ LK A+KP+++ G E + + V
Sbjct: 196 AEKPALSLEKESSTTNTTEQVILSKIEES---LKNAQKPVVIAGHEVISFGLEKTVTQFV 252
Query: 243 ESTGIPFLPTPMGKGLLPDTHP 264
T +P GK + ++ P
Sbjct: 253 SETKLPITTLNFGKSAVDESLP 274
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQXXXXXXXXXXXL 73
G L+ +LF T + + IP N RA++ G R I +HN L
Sbjct: 40 GRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHNRIHATDVLHAVWYL 99
Query: 74 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFGRG 120
T +P L GC G S+G IN I IS SC D G
Sbjct: 100 TTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYG 147
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 100/256 (39%), Gaps = 25/256 (9%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPG 78
++L GA MFG+ G +P +A L + ++ +E + G
Sbjct: 29 RALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLS--HEPAVGFAADAAARYSSTLG 86
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-----QELD-QVEAVK 132
+ G G + + ++ P+V+ISG+ + G + LD Q + K
Sbjct: 87 VAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERA-VSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXX 191
+ + D + P +A+VL A RP YL++P ++++ +
Sbjct: 147 EITVAQARLDDPAKAPAEIARVLGAARAQSRP--VYLEIPRNMVNAEVEPVGDDPAWPVD 204
Query: 192 XXXXXTVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251
D+ ++ ++ A P+++ E ++ +L + G+P +
Sbjct: 205 RDALAACA---------DEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVT 255
Query: 252 TPMGKGLLPD--THPL 265
T MG+GLL D T PL
Sbjct: 256 TFMGRGLLADAPTPPL 271
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 14/185 (7%)
Query: 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD--------QVEAVKPFSKFA 138
G + + L P+++ISG+ + D G G Q+E + + A
Sbjct: 76 GAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAA 135
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXXXTV 198
D P + V+ A+ R YLD+ ++ + T
Sbjct: 136 ESITDAHSAPAKIDHVIRTALRERKPA-YLDIACNIASEPCVRPGPVSSLLSEPEIDHTS 194
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
+ +D V+LL+++ P+++ G A A + L + KG
Sbjct: 195 LKAA-----VDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGF 249
Query: 259 LPDTH 263
P+ H
Sbjct: 250 FPEDH 254
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGD 414
WG++G L A ACP R V+ + GD
Sbjct: 407 WGSIGYTLAAAFGAQTACPNRRVIVLTGD 435
>pdb|1XVY|A Chain A, Crystal Structure Of Iron-Free Serratia Marcescens Sfua
Length = 309
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 345 DAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW 386
D L SPA +LV + A L Q EP+ R G W
Sbjct: 54 DVFLTENSPAMVLVDNAKLFAPLDAATLAQVEPQYRPSHGRW 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,905,575
Number of Sequences: 62578
Number of extensions: 469414
Number of successful extensions: 1089
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 92
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)