Query 013746
Match_columns 437
No_of_seqs 210 out of 1169
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0028 IlvB Thiamine pyrophos 100.0 1E-94 2.2E-99 744.6 39.4 411 13-437 1-458 (550)
2 KOG1185 Thiamine pyrophosphate 100.0 1.4E-90 3.1E-95 664.0 35.2 428 3-437 3-480 (571)
3 TIGR01504 glyox_carbo_lig glyo 100.0 7.5E-88 1.6E-92 706.9 41.5 412 13-437 2-468 (588)
4 PRK08979 acetolactate synthase 100.0 7.7E-87 1.7E-91 698.7 40.7 415 13-437 3-471 (572)
5 PRK06965 acetolactate synthase 100.0 9.8E-87 2.1E-91 699.4 40.4 416 11-437 18-487 (587)
6 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.3E-86 2.9E-91 695.3 39.7 417 13-437 2-466 (554)
7 PRK07282 acetolactate synthase 100.0 1.2E-86 2.7E-91 695.9 39.0 415 12-437 8-468 (566)
8 PRK07979 acetolactate synthase 100.0 2.1E-86 4.4E-91 696.2 40.6 416 13-437 3-471 (574)
9 PRK06725 acetolactate synthase 100.0 2.6E-86 5.7E-91 692.9 40.7 416 11-437 12-472 (570)
10 PRK09107 acetolactate synthase 100.0 2.7E-86 5.9E-91 696.0 39.9 418 10-437 7-480 (595)
11 TIGR03457 sulphoacet_xsc sulfo 100.0 7.5E-86 1.6E-90 692.7 41.4 410 13-437 1-480 (579)
12 PRK05858 hypothetical protein; 100.0 7.5E-86 1.6E-90 687.5 41.0 412 12-437 3-457 (542)
13 PRK11269 glyoxylate carboligas 100.0 9.9E-86 2.1E-90 692.8 41.6 412 13-437 3-469 (591)
14 PRK09259 putative oxalyl-CoA d 100.0 8.3E-86 1.8E-90 691.0 40.9 420 12-437 8-473 (569)
15 PRK08978 acetolactate synthase 100.0 1.4E-85 3.1E-90 687.2 40.7 409 14-437 1-451 (548)
16 PRK06048 acetolactate synthase 100.0 1.9E-85 4.1E-90 687.2 41.1 414 12-437 6-464 (561)
17 PRK06466 acetolactate synthase 100.0 1.6E-85 3.6E-90 689.4 40.0 417 12-437 2-473 (574)
18 PRK08155 acetolactate synthase 100.0 3.3E-85 7.2E-90 686.2 40.2 423 1-437 1-469 (564)
19 PRK08527 acetolactate synthase 100.0 5.9E-85 1.3E-89 683.7 40.3 414 13-437 2-464 (563)
20 PRK07418 acetolactate synthase 100.0 8.6E-85 1.9E-89 688.3 40.4 417 10-437 15-484 (616)
21 PRK07710 acetolactate synthase 100.0 9.3E-85 2E-89 683.3 40.1 417 10-437 12-474 (571)
22 PRK08322 acetolactate synthase 100.0 1.7E-84 3.6E-89 679.7 41.0 408 14-437 1-456 (547)
23 PRK07789 acetolactate synthase 100.0 1.4E-84 3E-89 686.3 40.2 415 12-437 29-497 (612)
24 PRK06456 acetolactate synthase 100.0 1.9E-84 4.1E-89 681.9 40.8 415 14-437 2-471 (572)
25 PLN02470 acetolactate synthase 100.0 2.3E-84 4.9E-89 681.8 40.9 416 11-437 10-476 (585)
26 PRK08617 acetolactate synthase 100.0 2E-84 4.2E-89 679.1 39.0 411 12-437 3-464 (552)
27 TIGR02418 acolac_catab acetola 100.0 4.5E-84 9.8E-89 674.6 40.5 407 16-437 1-458 (539)
28 PRK07525 sulfoacetaldehyde ace 100.0 5E-84 1.1E-88 679.5 41.0 412 11-437 3-485 (588)
29 CHL00099 ilvB acetohydroxyacid 100.0 5E-84 1.1E-88 678.7 40.1 417 12-437 8-480 (585)
30 PRK07586 hypothetical protein; 100.0 1.2E-83 2.6E-88 668.1 39.8 409 14-437 1-435 (514)
31 PRK12474 hypothetical protein; 100.0 1.8E-83 3.8E-88 666.3 40.3 410 12-437 3-439 (518)
32 PRK06276 acetolactate synthase 100.0 3.1E-83 6.8E-88 673.3 40.7 416 14-437 1-469 (586)
33 PRK08199 thiamine pyrophosphat 100.0 4.5E-83 9.7E-88 669.2 41.5 412 10-437 4-465 (557)
34 PRK06882 acetolactate synthase 100.0 3.5E-83 7.5E-88 672.7 39.7 416 13-437 3-471 (574)
35 TIGR00118 acolac_lg acetolacta 100.0 4.3E-83 9.4E-88 669.8 40.1 413 14-437 1-462 (558)
36 PRK08273 thiamine pyrophosphat 100.0 2.2E-83 4.7E-88 675.3 38.0 412 13-437 2-471 (597)
37 PRK07524 hypothetical protein; 100.0 7.1E-83 1.5E-87 665.0 39.8 409 14-437 2-457 (535)
38 PRK06154 hypothetical protein; 100.0 1.3E-82 2.8E-87 664.4 41.3 406 12-437 18-481 (565)
39 PRK06457 pyruvate dehydrogenas 100.0 1.2E-82 2.5E-87 664.5 40.2 400 14-437 2-447 (549)
40 PRK08611 pyruvate oxidase; Pro 100.0 1.3E-82 2.7E-87 666.9 40.4 405 13-437 3-458 (576)
41 TIGR02720 pyruv_oxi_spxB pyruv 100.0 1.1E-82 2.5E-87 667.1 39.1 407 16-437 1-458 (575)
42 PRK06546 pyruvate dehydrogenas 100.0 1.7E-82 3.7E-87 665.7 39.7 404 13-437 2-458 (578)
43 PLN02573 pyruvate decarboxylas 100.0 3E-83 6.6E-88 670.2 33.9 421 6-437 8-478 (578)
44 PRK09124 pyruvate dehydrogenas 100.0 2.9E-82 6.2E-87 665.3 40.2 406 12-437 1-458 (574)
45 PRK08327 acetolactate synthase 100.0 1.2E-81 2.5E-86 658.7 37.3 409 12-437 5-482 (569)
46 PRK08266 hypothetical protein; 100.0 7.2E-81 1.6E-85 651.2 41.0 409 13-437 3-452 (542)
47 PRK06112 acetolactate synthase 100.0 6.2E-81 1.3E-85 655.7 40.5 418 9-437 9-487 (578)
48 PRK07092 benzoylformate decarb 100.0 1.1E-80 2.3E-85 647.5 39.5 412 9-437 7-457 (530)
49 PRK07064 hypothetical protein; 100.0 1.8E-80 3.9E-85 648.8 38.8 406 13-437 2-455 (544)
50 TIGR03394 indol_phenyl_DC indo 100.0 7.3E-81 1.6E-85 647.2 33.7 403 15-437 1-452 (535)
51 TIGR03393 indolpyr_decarb indo 100.0 8.5E-81 1.8E-85 649.2 32.5 405 14-437 1-454 (539)
52 KOG4166 Thiamine pyrophosphate 100.0 1.7E-79 3.7E-84 577.8 25.0 417 12-434 89-571 (675)
53 PRK07449 2-succinyl-5-enolpyru 100.0 2.2E-76 4.8E-81 620.7 31.2 413 12-437 7-474 (568)
54 COG3961 Pyruvate decarboxylase 100.0 4.9E-72 1.1E-76 543.5 24.9 409 12-435 2-459 (557)
55 TIGR00173 menD 2-succinyl-5-en 100.0 1.6E-70 3.5E-75 556.8 31.5 376 16-401 2-431 (432)
56 PLN02980 2-oxoglutarate decarb 100.0 1.4E-68 3E-73 610.9 31.6 417 14-437 301-812 (1655)
57 KOG1184 Thiamine pyrophosphate 100.0 1.6E-65 3.5E-70 495.9 21.5 412 12-435 2-463 (561)
58 COG3960 Glyoxylate carboligase 100.0 3E-65 6.5E-70 469.4 20.6 411 12-435 2-467 (592)
59 COG3962 Acetolactate synthase 100.0 5.5E-58 1.2E-62 436.8 28.8 417 10-437 3-494 (617)
60 cd07039 TPP_PYR_POX Pyrimidine 100.0 1.9E-46 4.1E-51 329.8 17.8 162 15-177 1-163 (164)
61 cd07037 TPP_PYR_MenD Pyrimidin 100.0 5.8E-45 1.2E-49 317.9 17.2 155 18-172 1-162 (162)
62 PF02776 TPP_enzyme_N: Thiamin 100.0 8.1E-44 1.8E-48 316.9 17.0 169 14-182 1-171 (172)
63 COG1165 MenD 2-succinyl-6-hydr 100.0 1.2E-41 2.7E-46 335.1 26.0 415 11-437 5-471 (566)
64 cd07038 TPP_PYR_PDC_IPDC_like 100.0 3.4E-41 7.3E-46 296.1 15.8 153 18-172 1-162 (162)
65 cd07035 TPP_PYR_POX_like Pyrim 100.0 1.3E-37 2.8E-42 272.6 16.3 155 18-172 1-155 (155)
66 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 1.7E-33 3.7E-38 247.8 15.2 151 16-170 1-158 (160)
67 cd06586 TPP_enzyme_PYR Pyrimid 100.0 2.2E-31 4.8E-36 232.7 15.9 153 18-172 1-154 (154)
68 TIGR03845 sulfopyru_alph sulfo 100.0 1.4E-29 3.1E-34 220.0 14.0 146 18-175 2-157 (157)
69 TIGR03297 Ppyr-DeCO2ase phosph 99.9 1.3E-24 2.7E-29 213.2 19.0 88 28-115 1-92 (361)
70 TIGR03336 IOR_alpha indolepyru 99.9 9.3E-23 2E-27 214.5 22.9 393 12-437 3-454 (595)
71 cd02006 TPP_Gcl Thiamine pyrop 99.9 3.9E-23 8.5E-28 188.6 9.4 101 332-437 6-107 (202)
72 cd02013 TPP_Xsc_like Thiamine 99.9 1.7E-22 3.7E-27 183.3 9.5 100 333-437 3-103 (196)
73 PF00205 TPP_enzyme_M: Thiamin 99.9 1.2E-21 2.6E-26 167.7 7.8 104 208-311 1-111 (137)
74 cd02015 TPP_AHAS Thiamine pyro 99.8 2.6E-21 5.6E-26 174.4 9.0 97 336-437 3-100 (186)
75 cd02010 TPP_ALS Thiamine pyrop 99.8 3.6E-21 7.8E-26 171.7 8.5 94 339-437 4-98 (177)
76 cd02003 TPP_IolD Thiamine pyro 99.8 6.7E-21 1.4E-25 174.2 8.9 94 339-437 4-98 (205)
77 cd02005 TPP_PDC_IPDC Thiamine 99.8 1.1E-20 2.4E-25 169.5 8.9 100 333-437 1-100 (183)
78 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 2.4E-20 5.2E-25 166.0 9.8 95 338-437 3-98 (172)
79 cd02009 TPP_SHCHC_synthase Thi 99.8 1.1E-20 2.4E-25 168.4 6.7 94 339-437 6-100 (175)
80 cd02014 TPP_POX Thiamine pyrop 99.8 7.9E-20 1.7E-24 163.5 8.5 99 334-437 2-101 (178)
81 cd02002 TPP_BFDC Thiamine pyro 99.8 2.9E-19 6.4E-24 159.9 8.2 95 337-437 4-99 (178)
82 PRK06163 hypothetical protein; 99.7 2.8E-18 6.1E-23 155.4 8.2 93 333-437 12-108 (202)
83 PF02775 TPP_enzyme_C: Thiamin 99.7 3.8E-18 8.2E-23 148.9 5.1 76 361-437 3-78 (153)
84 cd02001 TPP_ComE_PpyrDC Thiami 99.7 2.5E-17 5.3E-22 143.9 7.8 78 353-437 13-92 (157)
85 cd00568 TPP_enzymes Thiamine p 99.7 1.1E-16 2.4E-21 141.8 8.9 94 340-437 3-96 (168)
86 TIGR03846 sulfopy_beta sulfopy 99.7 8E-17 1.7E-21 143.9 7.7 87 339-437 4-92 (181)
87 cd03371 TPP_PpyrDC Thiamine py 99.7 1.1E-16 2.4E-21 143.9 8.0 88 340-437 5-99 (188)
88 cd02008 TPP_IOR_alpha Thiamine 99.7 6.3E-17 1.4E-21 144.7 6.0 87 338-437 14-102 (178)
89 cd03375 TPP_OGFOR Thiamine pyr 99.6 2E-16 4.4E-21 143.0 7.1 89 340-437 11-102 (193)
90 cd03372 TPP_ComE Thiamine pyro 99.6 1.8E-15 3.9E-20 135.1 7.6 85 340-436 5-91 (179)
91 cd03376 TPP_PFOR_porB_like Thi 99.6 3.5E-16 7.7E-21 145.4 2.9 94 338-437 15-113 (235)
92 cd02018 TPP_PFOR Thiamine pyro 99.6 1.2E-15 2.6E-20 142.1 4.3 94 339-437 16-120 (237)
93 PRK11867 2-oxoglutarate ferred 99.5 7.9E-15 1.7E-19 139.7 6.9 89 338-437 27-120 (286)
94 TIGR02177 PorB_KorB 2-oxoacid: 99.5 1.9E-14 4.2E-19 136.3 8.7 87 340-437 13-104 (287)
95 PRK05778 2-oxoglutarate ferred 99.5 2.9E-14 6.3E-19 136.4 8.4 89 340-437 30-121 (301)
96 PRK11869 2-oxoacid ferredoxin 99.5 6.2E-14 1.3E-18 132.4 8.9 89 339-437 19-111 (280)
97 PRK09628 oorB 2-oxoglutarate-a 99.5 1.3E-13 2.9E-18 130.4 7.9 77 352-437 42-119 (277)
98 PRK11866 2-oxoacid ferredoxin 99.4 1.8E-13 4E-18 129.3 8.3 89 339-437 18-110 (279)
99 TIGR00315 cdhB CO dehydrogenas 99.4 4.7E-13 1E-17 115.7 6.9 99 209-310 18-133 (162)
100 PRK00945 acetyl-CoA decarbonyl 99.4 8.9E-13 1.9E-17 114.7 7.1 99 209-310 25-141 (171)
101 PRK08659 2-oxoglutarate ferred 99.0 1.6E-08 3.5E-13 100.5 16.5 159 12-174 5-173 (376)
102 PRK09627 oorA 2-oxoglutarate-a 98.9 2.4E-08 5.2E-13 99.0 15.6 159 12-174 4-172 (375)
103 COG4032 Predicted thiamine-pyr 98.9 7E-09 1.5E-13 85.1 9.2 162 12-177 2-168 (172)
104 PRK07119 2-ketoisovalerate fer 98.9 3.8E-08 8.3E-13 97.1 16.1 157 12-174 5-173 (352)
105 TIGR03710 OAFO_sf 2-oxoacid:ac 98.8 7.3E-08 1.6E-12 101.0 14.8 162 12-176 194-364 (562)
106 PRK08366 vorA 2-ketoisovalerat 98.8 2.4E-07 5.1E-12 92.4 15.7 158 12-175 4-169 (390)
107 PRK09622 porA pyruvate flavodo 98.7 2.6E-07 5.7E-12 92.9 15.4 159 12-175 11-178 (407)
108 PRK08367 porA pyruvate ferredo 98.7 5.4E-07 1.2E-11 90.1 16.5 159 12-176 5-173 (394)
109 PF01855 POR_N: Pyruvate flavo 98.7 1.2E-07 2.5E-12 87.8 10.7 150 23-175 2-157 (230)
110 cd02012 TPP_TK Thiamine pyroph 98.7 1.3E-08 2.8E-13 96.4 4.0 52 385-436 103-160 (255)
111 TIGR03181 PDH_E1_alph_x pyruva 98.7 1.4E-08 3E-13 99.9 3.9 53 385-437 120-178 (341)
112 COG4231 Indolepyruvate ferredo 98.7 6.6E-07 1.4E-11 91.3 15.9 161 12-178 14-181 (640)
113 PRK09193 indolepyruvate ferred 98.6 1.6E-06 3.4E-11 96.1 18.4 161 13-178 27-216 (1165)
114 cd02000 TPP_E1_PDC_ADC_BCADC T 98.6 3.1E-08 6.7E-13 95.6 4.6 53 385-437 102-160 (293)
115 PRK13030 2-oxoacid ferredoxin 98.6 8.7E-06 1.9E-10 90.5 23.5 162 12-178 18-208 (1159)
116 CHL00149 odpA pyruvate dehydro 98.5 7.4E-08 1.6E-12 94.6 3.7 57 378-437 121-191 (341)
117 TIGR03182 PDH_E1_alph_y pyruva 98.4 1.4E-07 3.1E-12 91.8 3.9 54 384-437 107-166 (315)
118 COG0674 PorA Pyruvate:ferredox 98.4 9E-06 2E-10 80.6 15.0 161 11-177 3-170 (365)
119 PRK13029 2-oxoacid ferredoxin 98.3 4.3E-05 9.4E-10 84.8 20.9 161 13-178 30-219 (1186)
120 PRK05899 transketolase; Review 98.3 4E-07 8.7E-12 97.0 4.1 52 385-436 116-183 (624)
121 cd02007 TPP_DXS Thiamine pyrop 98.3 3.9E-07 8.5E-12 82.5 3.4 53 385-437 73-131 (195)
122 PLN02374 pyruvate dehydrogenas 98.1 4E-06 8.6E-11 84.5 5.2 54 384-437 191-257 (433)
123 PRK05444 1-deoxy-D-xylulose-5- 98.0 3.6E-06 7.9E-11 88.9 3.8 53 385-437 115-174 (580)
124 COG1880 CdhB CO dehydrogenase/ 98.0 1.4E-05 3.1E-10 67.1 6.2 81 209-289 26-120 (170)
125 PRK12571 1-deoxy-D-xylulose-5- 97.9 1.3E-05 2.7E-10 85.5 4.4 53 385-437 121-175 (641)
126 TIGR02176 pyruv_ox_red pyruvat 97.8 0.00041 8.9E-09 78.5 16.3 153 13-172 3-169 (1165)
127 PF02552 CO_dh: CO dehydrogena 97.2 0.00071 1.5E-08 59.0 5.8 81 207-289 23-116 (167)
128 PRK11864 2-ketoisovalerate fer 96.5 0.0038 8.3E-08 59.9 5.3 89 340-437 30-125 (300)
129 PRK11865 pyruvate ferredoxin o 96.5 0.0055 1.2E-07 58.8 6.0 90 339-437 29-124 (299)
130 cd07033 TPP_PYR_DXS_TK_like Py 96.4 0.17 3.8E-06 43.9 14.9 114 52-172 39-156 (156)
131 COG1029 FwdB Formylmethanofura 96.3 0.021 4.6E-07 54.9 9.0 75 204-289 65-152 (429)
132 PF13292 DXP_synthase_N: 1-deo 96.2 0.017 3.7E-07 53.8 7.4 52 386-437 110-167 (270)
133 PF02779 Transket_pyr: Transke 96.1 0.065 1.4E-06 47.7 10.5 120 52-175 48-175 (178)
134 cd02011 TPP_PK Thiamine pyroph 96.0 0.0066 1.4E-07 55.8 3.7 32 386-417 61-92 (227)
135 PTZ00182 3-methyl-2-oxobutanat 95.9 0.32 6.9E-06 48.3 15.5 164 4-176 25-209 (355)
136 cd02009 TPP_SHCHC_synthase Thi 95.9 0.036 7.8E-07 49.2 7.8 116 52-173 42-175 (175)
137 cd02013 TPP_Xsc_like Thiamine 95.8 0.028 6.1E-07 50.9 7.2 109 63-174 58-180 (196)
138 TIGR00232 tktlase_bact transke 95.7 0.062 1.3E-06 57.8 10.0 116 53-173 397-515 (653)
139 cd02001 TPP_ComE_PpyrDC Thiami 95.5 0.47 1E-05 41.3 13.3 135 31-173 16-155 (157)
140 PLN02790 transketolase 95.5 0.085 1.8E-06 56.7 10.2 117 53-174 393-513 (654)
141 smart00861 Transket_pyr Transk 95.3 0.087 1.9E-06 46.3 8.3 111 54-172 51-166 (168)
142 PF02775 TPP_enzyme_C: Thiamin 95.3 0.078 1.7E-06 45.8 7.8 104 61-170 31-153 (153)
143 PTZ00089 transketolase; Provis 95.3 0.098 2.1E-06 56.4 10.0 117 53-173 404-522 (661)
144 PRK12753 transketolase; Review 95.2 0.12 2.7E-06 55.5 10.5 117 53-173 403-521 (663)
145 cd02014 TPP_POX Thiamine pyrop 95.2 0.11 2.5E-06 46.1 8.7 117 51-173 41-173 (178)
146 cd02017 TPP_E1_EcPDC_like Thia 95.2 0.016 3.5E-07 57.3 3.2 47 386-432 117-176 (386)
147 PRK12754 transketolase; Review 95.1 0.14 3E-06 55.0 10.4 117 53-173 403-521 (663)
148 PF00456 Transketolase_N: Tran 95.1 0.012 2.6E-07 57.6 2.3 49 385-433 109-173 (332)
149 cd02004 TPP_BZL_OCoD_HPCL Thia 95.1 0.11 2.4E-06 45.8 8.1 105 63-173 53-172 (172)
150 PLN02790 transketolase 95.1 0.022 4.8E-07 61.2 4.3 49 385-433 103-167 (654)
151 cd02010 TPP_ALS Thiamine pyrop 94.9 0.19 4.2E-06 44.6 9.2 102 66-173 56-170 (177)
152 COG1013 PorB Pyruvate:ferredox 94.5 0.041 8.9E-07 52.9 4.2 52 386-437 69-121 (294)
153 cd02015 TPP_AHAS Thiamine pyro 94.5 0.26 5.5E-06 44.1 9.0 104 64-173 56-174 (186)
154 PRK09212 pyruvate dehydrogenas 94.4 4.1 8.9E-05 40.0 17.9 152 13-174 3-176 (327)
155 PRK12315 1-deoxy-D-xylulose-5- 94.4 0.041 8.9E-07 58.3 4.2 53 385-437 111-169 (581)
156 cd02006 TPP_Gcl Thiamine pyrop 94.4 0.41 8.9E-06 43.4 10.2 107 65-173 64-194 (202)
157 PRK05444 1-deoxy-D-xylulose-5- 94.3 0.37 8.1E-06 51.2 11.3 153 14-175 279-441 (580)
158 cd07036 TPP_PYR_E1-PDHc-beta_l 94.2 2.9 6.2E-05 36.8 14.9 146 17-171 4-166 (167)
159 cd02003 TPP_IolD Thiamine pyro 94.1 0.27 5.9E-06 44.8 8.5 137 32-174 18-185 (205)
160 cd03375 TPP_OGFOR Thiamine pyr 94.0 0.44 9.4E-06 43.0 9.6 151 15-175 9-186 (193)
161 PRK12571 1-deoxy-D-xylulose-5- 93.9 0.51 1.1E-05 50.7 11.4 150 15-173 320-479 (641)
162 cd02005 TPP_PDC_IPDC Thiamine 93.9 0.38 8.2E-06 43.0 8.9 103 66-173 58-174 (183)
163 COG3959 Transketolase, N-termi 93.9 0.14 3.1E-06 46.4 5.9 48 386-433 118-171 (243)
164 cd02761 MopB_FmdB-FwdB The Mop 93.9 0.15 3.3E-06 51.6 7.2 87 203-291 55-145 (415)
165 PLN02582 1-deoxy-D-xylulose-5- 93.8 0.064 1.4E-06 57.5 4.2 53 385-437 142-200 (677)
166 CHL00144 odpB pyruvate dehydro 93.8 1.3 2.9E-05 43.4 13.2 149 14-171 4-173 (327)
167 TIGR00204 dxs 1-deoxy-D-xylulo 93.8 0.61 1.3E-05 49.9 11.6 152 14-174 310-471 (617)
168 cd02008 TPP_IOR_alpha Thiamine 93.7 0.79 1.7E-05 40.7 10.6 101 66-170 59-174 (178)
169 PRK12753 transketolase; Review 93.7 0.066 1.4E-06 57.6 4.2 49 385-433 112-176 (663)
170 PRK05261 putative phosphoketol 93.7 0.063 1.4E-06 58.0 3.9 32 386-417 141-172 (785)
171 TIGR00232 tktlase_bact transke 93.6 0.071 1.5E-06 57.3 4.3 50 385-434 108-173 (653)
172 PF09364 XFP_N: XFP N-terminal 93.6 0.066 1.4E-06 52.0 3.5 33 386-418 139-171 (379)
173 TIGR00204 dxs 1-deoxy-D-xylulo 93.6 0.081 1.8E-06 56.5 4.5 53 385-437 109-167 (617)
174 PRK12754 transketolase; Review 93.6 0.075 1.6E-06 57.0 4.2 50 385-434 112-177 (663)
175 PTZ00089 transketolase; Provis 93.6 0.064 1.4E-06 57.7 3.8 49 385-433 114-178 (661)
176 PRK06163 hypothetical protein; 93.4 5.9 0.00013 36.0 16.2 156 10-173 9-173 (202)
177 PLN02582 1-deoxy-D-xylulose-5- 93.4 0.62 1.3E-05 50.1 10.8 152 14-174 356-517 (677)
178 TIGR03846 sulfopy_beta sulfopy 93.4 1.9 4.2E-05 38.4 12.4 102 64-173 48-156 (181)
179 PLN02225 1-deoxy-D-xylulose-5- 93.3 0.13 2.9E-06 55.0 5.5 51 387-437 189-245 (701)
180 PRK05261 putative phosphoketol 93.2 3.3 7.1E-05 45.2 15.8 205 52-284 450-685 (785)
181 cd02002 TPP_BFDC Thiamine pyro 93.2 2.7 5.8E-05 37.0 13.2 114 51-171 40-177 (178)
182 PRK05778 2-oxoglutarate ferred 93.1 1.4 3E-05 42.7 11.7 149 15-173 28-203 (301)
183 cd03372 TPP_ComE Thiamine pyro 93.1 2.5 5.4E-05 37.6 12.6 100 65-173 49-155 (179)
184 PRK05899 transketolase; Review 93.1 0.65 1.4E-05 49.9 10.5 117 52-173 367-486 (624)
185 PLN02234 1-deoxy-D-xylulose-5- 93.0 0.097 2.1E-06 55.7 4.1 53 385-437 175-233 (641)
186 PRK12315 1-deoxy-D-xylulose-5- 93.0 0.83 1.8E-05 48.5 11.1 153 13-175 277-439 (581)
187 cd00568 TPP_enzymes Thiamine p 93.0 0.43 9.3E-06 41.6 7.6 101 65-171 53-167 (168)
188 PLN02269 Pyruvate dehydrogenas 92.8 0.092 2E-06 52.1 3.4 53 385-437 136-194 (362)
189 PRK11892 pyruvate dehydrogenas 92.6 2.6 5.6E-05 43.4 13.5 150 12-169 140-309 (464)
190 TIGR00759 aceE pyruvate dehydr 92.5 0.11 2.4E-06 56.4 3.7 49 385-433 187-248 (885)
191 TIGR03297 Ppyr-DeCO2ase phosph 92.3 5.4 0.00012 39.7 15.1 153 14-174 172-337 (361)
192 TIGR03181 PDH_E1_alph_x pyruva 92.1 1.1 2.4E-05 44.2 10.0 95 78-173 145-246 (341)
193 PRK11866 2-oxoacid ferredoxin 92.0 2.4 5.2E-05 40.5 11.7 149 16-173 18-192 (279)
194 PRK07525 sulfoacetaldehyde ace 92.0 0.66 1.4E-05 49.4 8.8 108 63-173 440-562 (588)
195 PRK13012 2-oxoacid dehydrogena 92.0 4.5 9.7E-05 44.9 15.1 171 56-248 578-761 (896)
196 TIGR03186 AKGDH_not_PDH alpha- 92.0 0.16 3.4E-06 55.7 4.1 49 385-433 187-248 (889)
197 cd02018 TPP_PFOR Thiamine pyro 91.9 1.1 2.4E-05 41.8 9.2 96 75-176 87-206 (237)
198 PRK11869 2-oxoacid ferredoxin 91.8 4.1 8.9E-05 39.0 13.0 150 16-173 19-193 (280)
199 PRK09628 oorB 2-oxoglutarate-a 91.6 3 6.6E-05 39.8 12.0 147 17-174 28-202 (277)
200 PF00676 E1_dh: Dehydrogenase 91.5 0.75 1.6E-05 44.6 7.9 103 68-173 111-225 (300)
201 PRK08327 acetolactate synthase 91.5 0.74 1.6E-05 48.9 8.5 106 65-173 437-567 (569)
202 CHL00149 odpA pyruvate dehydro 91.4 1.2 2.6E-05 44.0 9.3 94 78-172 158-258 (341)
203 PRK07979 acetolactate synthase 91.3 0.86 1.9E-05 48.4 8.8 109 63-174 426-549 (574)
204 PRK08611 pyruvate oxidase; Pro 91.3 0.89 1.9E-05 48.3 8.9 105 64-174 414-531 (576)
205 PLN02234 1-deoxy-D-xylulose-5- 91.3 4.9 0.00011 43.0 14.2 152 14-174 357-518 (641)
206 COG3958 Transketolase, C-termi 91.2 1.9 4.2E-05 40.8 9.8 116 52-173 49-168 (312)
207 TIGR01504 glyox_carbo_lig glyo 91.0 0.32 6.8E-06 51.9 5.2 108 65-174 425-556 (588)
208 PRK09124 pyruvate dehydrogenas 91.0 1.3 2.9E-05 47.0 9.9 106 63-174 413-531 (574)
209 cd03376 TPP_PFOR_porB_like Thi 90.9 2.4 5.2E-05 39.5 10.3 94 75-175 80-202 (235)
210 cd02000 TPP_E1_PDC_ADC_BCADC T 90.8 0.97 2.1E-05 43.6 7.9 110 66-176 112-231 (293)
211 PRK08322 acetolactate synthase 90.4 1.4 2.9E-05 46.6 9.3 103 65-173 413-528 (547)
212 PRK07524 hypothetical protein; 90.4 1.5 3.2E-05 46.2 9.5 108 63-176 412-532 (535)
213 PRK08155 acetolactate synthase 90.4 1.3 2.9E-05 46.9 9.2 117 52-174 410-544 (564)
214 PRK09444 pntB pyridine nucleot 90.1 0.33 7.2E-06 48.8 4.0 81 207-287 295-391 (462)
215 TIGR03186 AKGDH_not_PDH alpha- 90.1 4.1 8.8E-05 45.1 12.6 122 52-173 560-691 (889)
216 TIGR02418 acolac_catab acetola 90.1 0.9 2E-05 47.9 7.6 105 63-173 413-530 (539)
217 PRK06546 pyruvate dehydrogenas 90.1 1.6 3.4E-05 46.5 9.4 103 66-174 416-531 (578)
218 PRK08617 acetolactate synthase 90.0 1.6 3.4E-05 46.2 9.3 102 66-173 422-536 (552)
219 TIGR03182 PDH_E1_alph_y pyruva 89.8 1.3 2.8E-05 43.2 7.9 108 67-175 119-236 (315)
220 PRK08266 hypothetical protein; 89.8 1.9 4.1E-05 45.5 9.7 104 65-174 409-526 (542)
221 TIGR03394 indol_phenyl_DC indo 89.8 1.5 3.2E-05 46.2 8.9 102 66-173 411-521 (535)
222 PRK11864 2-ketoisovalerate fer 89.8 4 8.7E-05 39.4 11.0 116 51-171 63-205 (300)
223 PRK06882 acetolactate synthase 89.7 1.4 3.1E-05 46.8 8.7 107 63-174 426-547 (574)
224 PRK06112 acetolactate synthase 89.6 2.2 4.7E-05 45.4 10.0 117 51-173 427-560 (578)
225 PRK07064 hypothetical protein; 89.4 1.4 3.1E-05 46.3 8.5 102 66-173 413-528 (544)
226 PLN02374 pyruvate dehydrogenas 89.1 1.7 3.8E-05 44.2 8.4 94 77-172 223-324 (433)
227 PRK06154 hypothetical protein; 89.1 1.5 3.3E-05 46.5 8.3 108 63-173 436-555 (565)
228 TIGR02720 pyruv_oxi_spxB pyruv 89.0 2.2 4.8E-05 45.3 9.6 106 65-174 415-533 (575)
229 PRK11867 2-oxoglutarate ferred 88.8 3 6.6E-05 40.0 9.4 107 63-174 74-203 (286)
230 PF02233 PNTB: NAD(P) transhyd 88.7 0.29 6.3E-06 49.6 2.5 39 207-245 296-334 (463)
231 PRK11269 glyoxylate carboligas 88.6 1.5 3.2E-05 46.8 8.0 109 63-173 424-556 (591)
232 TIGR02177 PorB_KorB 2-oxoacid: 88.5 2.2 4.7E-05 41.0 8.2 147 17-173 13-186 (287)
233 PRK05858 hypothetical protein; 88.5 1.6 3.4E-05 46.1 8.0 102 66-173 415-530 (542)
234 PRK06466 acetolactate synthase 88.4 2.2 4.8E-05 45.3 9.1 105 64-173 429-548 (574)
235 cd03371 TPP_PpyrDC Thiamine py 88.2 17 0.00036 32.5 13.4 105 63-174 53-164 (188)
236 PLN02470 acetolactate synthase 88.2 2.1 4.6E-05 45.6 8.8 106 63-174 431-558 (585)
237 PLN02573 pyruvate decarboxylas 88.1 2.1 4.6E-05 45.5 8.7 105 65-173 435-552 (578)
238 PRK11865 pyruvate ferredoxin o 88.1 5.6 0.00012 38.4 10.7 115 51-171 63-209 (299)
239 PRK08273 thiamine pyrophosphat 88.0 2.7 5.8E-05 45.0 9.4 104 66-174 423-547 (597)
240 TIGR00118 acolac_lg acetolacta 87.9 1.5 3.2E-05 46.5 7.4 106 63-174 417-537 (558)
241 PRK09405 aceE pyruvate dehydro 87.8 0.71 1.5E-05 50.8 4.9 48 386-433 194-254 (891)
242 COG0021 TktA Transketolase [Ca 87.7 1.7 3.8E-05 45.5 7.4 48 385-432 114-177 (663)
243 PRK06725 acetolactate synthase 87.7 1.4 3E-05 46.9 6.9 106 63-174 427-546 (570)
244 PRK06048 acetolactate synthase 87.7 3.2 7E-05 43.9 9.8 118 51-174 404-539 (561)
245 TIGR03457 sulphoacet_xsc sulfo 87.7 7.8 0.00017 41.2 12.7 107 64-173 436-557 (579)
246 PRK08199 thiamine pyrophosphat 87.7 2.7 5.9E-05 44.5 9.2 102 66-173 423-538 (557)
247 PRK07449 2-succinyl-5-enolpyru 87.6 1.1 2.5E-05 47.4 6.3 115 52-173 416-549 (568)
248 PLN02683 pyruvate dehydrogenas 87.6 13 0.00028 36.9 13.4 151 13-171 26-196 (356)
249 PRK07710 acetolactate synthase 87.5 2.8 6E-05 44.5 9.2 106 63-174 429-549 (571)
250 PRK08979 acetolactate synthase 87.5 2.5 5.5E-05 44.9 8.8 107 63-174 426-547 (572)
251 PRK09107 acetolactate synthase 87.4 2.4 5.1E-05 45.3 8.6 105 64-174 436-555 (595)
252 PLN02225 1-deoxy-D-xylulose-5- 87.3 16 0.00034 39.6 14.5 154 13-174 380-542 (701)
253 PRK13012 2-oxoacid dehydrogena 87.2 0.76 1.6E-05 50.8 4.7 49 385-433 201-262 (896)
254 PRK07418 acetolactate synthase 87.0 1.2 2.7E-05 47.7 6.2 102 66-173 442-559 (616)
255 PRK08978 acetolactate synthase 87.0 3.2 7E-05 43.8 9.3 105 64-174 407-526 (548)
256 TIGR03254 oxalate_oxc oxalyl-C 86.9 2.1 4.6E-05 45.2 7.9 104 64-173 423-538 (554)
257 TIGR03336 IOR_alpha indolepyru 86.9 4 8.7E-05 43.6 9.9 106 66-174 411-531 (595)
258 PRK10886 DnaA initiator-associ 86.8 6.5 0.00014 35.5 9.8 101 14-115 28-149 (196)
259 PRK09259 putative oxalyl-CoA d 86.7 2.7 5.8E-05 44.6 8.5 106 63-174 429-547 (569)
260 COG1282 PntB NAD/NADP transhyd 86.7 0.94 2E-05 44.1 4.4 40 207-246 297-336 (463)
261 PRK07092 benzoylformate decarb 86.6 2.5 5.4E-05 44.4 8.1 104 64-173 413-530 (530)
262 PRK08527 acetolactate synthase 86.5 1.4 3E-05 46.7 6.2 106 63-174 419-539 (563)
263 COG0028 IlvB Thiamine pyrophos 86.4 1.6 3.4E-05 46.1 6.4 104 66-175 416-533 (550)
264 PRK06965 acetolactate synthase 86.2 4.1 8.9E-05 43.4 9.6 106 63-173 442-562 (587)
265 PRK06457 pyruvate dehydrogenas 86.1 3.6 7.8E-05 43.5 9.0 103 66-174 404-520 (549)
266 PRK07789 acetolactate synthase 86.0 3.1 6.8E-05 44.6 8.6 107 63-174 452-577 (612)
267 PRK06456 acetolactate synthase 85.9 2.5 5.4E-05 44.9 7.7 104 65-174 428-546 (572)
268 CHL00099 ilvB acetohydroxyacid 85.7 4.5 9.8E-05 43.1 9.6 103 65-173 437-555 (585)
269 PF00766 ETF_alpha: Electron t 84.8 0.58 1.3E-05 36.0 1.7 66 220-289 8-75 (86)
270 PRK06276 acetolactate synthase 84.0 4 8.7E-05 43.5 8.3 105 63-173 424-543 (586)
271 COG1071 AcoA Pyruvate/2-oxoglu 84.0 5.8 0.00013 39.1 8.6 110 61-171 143-259 (358)
272 KOG0523 Transketolase [Carbohy 84.0 1.3 2.7E-05 46.0 4.2 52 383-434 114-172 (632)
273 PF00676 E1_dh: Dehydrogenase 83.8 1.3 2.8E-05 42.9 4.1 50 386-437 100-157 (300)
274 PF13580 SIS_2: SIS domain; PD 83.3 4 8.8E-05 34.4 6.5 97 14-110 22-138 (138)
275 TIGR03129 one_C_dehyd_B formyl 82.4 6.2 0.00013 39.9 8.7 84 204-290 62-150 (421)
276 PRK07586 hypothetical protein; 82.0 3 6.5E-05 43.6 6.3 101 65-171 392-513 (514)
277 PRK12474 hypothetical protein; 82.0 3.1 6.7E-05 43.6 6.4 102 64-171 395-517 (518)
278 COG1154 Dxs Deoxyxylulose-5-ph 81.9 0.9 2E-05 47.3 2.2 42 387-428 115-162 (627)
279 TIGR03393 indolpyr_decarb indo 81.2 6.6 0.00014 41.4 8.5 93 75-173 422-527 (539)
280 COG3957 Phosphoketolase [Carbo 81.1 1.2 2.5E-05 47.1 2.7 29 387-415 153-181 (793)
281 PRK00414 gmhA phosphoheptose i 80.9 11 0.00024 33.9 8.7 98 15-114 32-150 (192)
282 COG0021 TktA Transketolase [Ca 79.9 10 0.00022 40.0 9.0 158 11-172 354-520 (663)
283 COG0541 Ffh Signal recognition 79.2 6.1 0.00013 39.8 6.9 49 205-253 114-162 (451)
284 PRK13936 phosphoheptose isomer 78.7 14 0.0003 33.3 8.8 99 15-113 31-149 (197)
285 cd02752 MopB_Formate-Dh-Na-lik 78.6 4 8.7E-05 43.9 5.9 105 205-310 74-206 (649)
286 COG1071 AcoA Pyruvate/2-oxoglu 78.1 2.9 6.3E-05 41.2 4.3 53 385-437 134-193 (358)
287 cd02750 MopB_Nitrate-R-NarG-li 76.8 3.4 7.5E-05 42.6 4.7 106 205-310 88-206 (461)
288 cd02007 TPP_DXS Thiamine pyrop 76.1 23 0.0005 31.9 9.3 87 78-171 98-188 (195)
289 cd02773 MopB_Res-Cmplx1_Nad11 76.0 12 0.00026 37.4 8.2 104 205-310 71-182 (375)
290 TIGR00441 gmhA phosphoheptose 75.6 21 0.00046 30.6 8.7 97 18-114 2-118 (154)
291 PLN02980 2-oxoglutarate decarb 75.0 9.3 0.0002 46.0 8.1 104 64-173 767-889 (1655)
292 cd08769 DAP_dppA_2 Peptidase M 74.6 1.1 2.4E-05 42.5 0.3 144 16-160 38-205 (270)
293 PF00448 SRP54: SRP54-type pro 74.2 8.6 0.00019 34.7 6.1 48 206-253 16-63 (196)
294 cd02768 MopB_NADH-Q-OR-NuoG2 M 72.4 10 0.00022 37.8 6.8 105 205-310 72-185 (386)
295 PRK09405 aceE pyruvate dehydro 72.0 1.4E+02 0.003 33.6 15.5 120 52-171 565-694 (891)
296 COG0552 FtsY Signal recognitio 71.4 8.8 0.00019 37.4 5.6 50 204-253 152-201 (340)
297 cd00281 DAP_dppA Peptidase M55 71.0 1.4 3E-05 41.6 0.1 142 16-159 38-203 (265)
298 PRK13937 phosphoheptose isomer 70.5 28 0.00061 31.0 8.5 100 15-114 26-145 (188)
299 TIGR00853 pts-lac PTS system, 70.3 5 0.00011 31.6 3.1 35 218-252 3-37 (95)
300 PRK05333 NAD-dependent deacety 68.9 7.4 0.00016 37.4 4.6 42 201-254 2-43 (285)
301 PF02603 Hpr_kinase_N: HPr Ser 68.7 5.5 0.00012 33.2 3.2 48 204-254 66-113 (127)
302 PRK13761 hypothetical protein; 68.3 10 0.00023 34.6 5.0 49 205-254 54-102 (248)
303 cd05564 PTS_IIB_chitobiose_lic 67.8 7.5 0.00016 30.6 3.7 32 220-251 1-32 (96)
304 cd08663 DAP_dppA_1 Peptidase M 67.0 2.1 4.6E-05 40.4 0.5 142 16-159 38-204 (266)
305 cd01408 SIRT1 SIRT1: Eukaryoti 66.6 2.3 4.9E-05 39.6 0.5 32 259-290 157-188 (235)
306 cd02774 MopB_Res-Cmplx1_Nad11- 66.3 25 0.00054 35.1 7.9 105 205-310 72-185 (366)
307 COG1454 EutG Alcohol dehydroge 66.1 25 0.00055 35.1 7.8 75 206-287 15-96 (377)
308 PLN02269 Pyruvate dehydrogenas 66.0 26 0.00057 34.8 7.9 105 62-171 146-257 (362)
309 cd02016 TPP_E1_OGDC_like Thiam 65.8 11 0.00025 35.6 5.0 96 76-172 139-245 (265)
310 KOG0780 Signal recognition par 65.5 20 0.00044 35.7 6.7 47 207-254 117-164 (483)
311 PRK09130 NADH dehydrogenase su 65.5 12 0.00026 40.7 5.9 104 205-310 290-401 (687)
312 TIGR03479 DMSO_red_II_alp DMSO 65.1 15 0.00032 41.5 6.7 106 205-310 142-260 (912)
313 cd08770 DAP_dppA_3 Peptidase M 63.3 4 8.8E-05 38.5 1.6 143 16-161 38-205 (263)
314 PRK07282 acetolactate synthase 63.1 22 0.00048 37.7 7.3 104 63-173 423-541 (566)
315 PRK00771 signal recognition pa 62.7 25 0.00054 36.0 7.2 48 206-253 110-157 (437)
316 PRK11302 DNA-binding transcrip 61.9 21 0.00046 33.9 6.3 72 203-286 113-184 (284)
317 PF02302 PTS_IIB: PTS system, 61.3 8.2 0.00018 29.6 2.8 53 220-284 1-54 (90)
318 TIGR01973 NuoG NADH-quinone ox 61.2 23 0.00049 37.9 7.0 104 205-310 289-399 (603)
319 cd05565 PTS_IIB_lactose PTS_II 61.1 11 0.00025 29.9 3.5 33 220-252 2-34 (99)
320 PF04951 Peptidase_M55: D-amin 60.8 2 4.3E-05 40.6 -1.0 143 16-161 38-206 (265)
321 PRK13938 phosphoheptose isomer 60.3 75 0.0016 28.6 9.2 99 15-114 33-152 (196)
322 COG2006 Uncharacterized conser 59.8 1.1E+02 0.0023 29.1 10.1 126 139-285 8-142 (293)
323 PRK09461 ansA cytoplasmic aspa 59.5 8.8 0.00019 37.8 3.2 55 202-260 220-279 (335)
324 cd05006 SIS_GmhA Phosphoheptos 59.5 86 0.0019 27.4 9.4 100 15-114 21-140 (177)
325 KOG0225 Pyruvate dehydrogenase 59.5 7.5 0.00016 37.6 2.6 54 384-437 162-221 (394)
326 PRK15482 transcriptional regul 59.4 34 0.00074 32.6 7.3 72 204-287 121-192 (285)
327 cd00368 Molybdopterin-Binding 59.3 57 0.0012 32.1 9.2 85 204-291 229-320 (374)
328 COG3142 CutC Uncharacterized p 59.2 1.5E+02 0.0032 27.4 12.0 160 75-251 23-198 (241)
329 PF13380 CoA_binding_2: CoA bi 58.8 20 0.00043 29.2 4.8 42 16-57 67-108 (116)
330 COG1701 Uncharacterized protei 57.9 20 0.00044 32.4 4.8 50 204-254 55-104 (256)
331 PRK02399 hypothetical protein; 57.8 1.8E+02 0.0038 29.4 11.9 120 95-232 264-388 (406)
332 cd02012 TPP_TK Thiamine pyroph 57.5 56 0.0012 30.7 8.2 90 80-173 130-227 (255)
333 cd00368 Molybdopterin-Binding 57.4 15 0.00032 36.4 4.6 106 205-310 74-192 (374)
334 cd05569 PTS_IIB_fructose PTS_I 57.2 23 0.00051 27.8 4.7 61 223-290 5-66 (96)
335 cd02772 MopB_NDH-1_NuoG2 MopB_ 57.2 27 0.00059 35.3 6.5 103 205-310 72-188 (414)
336 cd02771 MopB_NDH-1_NuoG2-N7 Mo 57.1 20 0.00044 36.9 5.7 85 205-290 72-158 (472)
337 KOG0081 GTPase Rab27, small G 57.1 15 0.00033 31.7 3.8 40 218-257 122-166 (219)
338 TIGR00162 conserved hypothetic 56.9 1.2E+02 0.0027 27.0 9.9 91 14-116 33-124 (188)
339 PRK09860 putative alcohol dehy 56.8 33 0.00071 34.5 6.9 76 206-286 17-97 (383)
340 COG1154 Dxs Deoxyxylulose-5-ph 55.8 1.2E+02 0.0025 32.3 10.5 154 12-173 314-476 (627)
341 PRK11916 electron transfer fla 55.2 28 0.00061 33.9 5.8 48 215-263 191-241 (312)
342 cd02774 MopB_Res-Cmplx1_Nad11- 54.5 14 0.00031 36.8 3.8 39 209-247 212-254 (366)
343 PRK10624 L-1,2-propanediol oxi 54.3 34 0.00073 34.3 6.5 76 206-286 16-96 (382)
344 COG4231 Indolepyruvate ferredo 54.2 51 0.0011 34.9 7.7 103 66-170 436-551 (640)
345 PRK15454 ethanol dehydrogenase 54.2 34 0.00074 34.5 6.5 76 207-287 36-116 (395)
346 cd02766 MopB_3 The MopB_3 CD i 54.0 6.2 0.00013 41.2 1.2 106 205-310 76-193 (501)
347 cd05005 SIS_PHI Hexulose-6-pho 53.5 91 0.002 27.3 8.6 92 16-115 22-115 (179)
348 TIGR03127 RuMP_HxlB 6-phospho 53.3 82 0.0018 27.5 8.2 91 16-115 19-112 (179)
349 cd08176 LPO Lactadehyde:propan 53.0 38 0.00081 33.9 6.6 76 206-286 14-94 (377)
350 cd08190 HOT Hydroxyacid-oxoaci 53.0 47 0.001 33.7 7.4 76 207-287 10-90 (414)
351 TIGR02638 lactal_redase lactal 52.9 38 0.00082 33.9 6.6 75 207-286 16-95 (379)
352 cd08178 AAD_C C-terminal alcoh 52.7 29 0.00063 35.0 5.8 74 208-286 11-87 (398)
353 cd08193 HVD 5-hydroxyvalerate 52.2 45 0.00098 33.3 7.1 76 207-287 13-93 (376)
354 PRK11557 putative DNA-binding 52.1 54 0.0012 31.0 7.3 71 203-285 113-183 (278)
355 PF06792 UPF0261: Uncharacteri 51.5 2.7E+02 0.0059 28.1 12.1 182 15-232 198-388 (403)
356 cd08181 PPD-like 1,3-propanedi 51.3 45 0.00097 33.1 6.8 76 207-287 13-93 (357)
357 cd06348 PBP1_ABC_ligand_bindin 51.1 51 0.0011 32.0 7.2 59 207-267 54-112 (344)
358 COG1737 RpiR Transcriptional r 51.0 38 0.00083 32.3 6.0 73 202-286 114-186 (281)
359 cd08189 Fe-ADH5 Iron-containin 50.7 44 0.00095 33.4 6.7 75 207-286 13-92 (374)
360 cd08191 HHD 6-hydroxyhexanoate 50.7 36 0.00078 34.2 6.1 76 207-286 10-88 (386)
361 cd08185 Fe-ADH1 Iron-containin 50.6 52 0.0011 32.9 7.2 75 207-286 13-92 (380)
362 PLN00022 electron transfer fla 50.2 30 0.00066 34.3 5.3 47 215-262 234-282 (356)
363 cd08188 Fe-ADH4 Iron-containin 50.2 41 0.0009 33.6 6.4 76 206-286 14-94 (377)
364 COG2247 LytB Putative cell wal 50.2 42 0.00091 32.5 5.9 44 237-289 43-87 (337)
365 cd07035 TPP_PYR_POX_like Pyrim 50.0 18 0.0004 30.8 3.4 46 392-437 46-91 (155)
366 COG0279 GmhA Phosphoheptose is 50.0 1.3E+02 0.0028 26.3 8.3 99 14-113 28-147 (176)
367 PF07085 DRTGG: DRTGG domain; 49.8 17 0.00038 28.8 3.0 36 215-254 58-93 (105)
368 cd08186 Fe-ADH8 Iron-containin 49.5 43 0.00093 33.6 6.4 74 208-286 11-93 (383)
369 cd02016 TPP_E1_OGDC_like Thiam 48.4 10 0.00023 35.8 1.7 48 386-433 112-171 (265)
370 cd08192 Fe-ADH7 Iron-containin 48.1 45 0.00097 33.2 6.3 75 207-286 11-90 (370)
371 cd02201 FtsZ_type1 FtsZ is a G 47.6 52 0.0011 31.9 6.4 78 205-285 72-154 (304)
372 PRK11337 DNA-binding transcrip 47.3 1.3E+02 0.0029 28.6 9.3 94 18-115 131-227 (292)
373 cd08170 GlyDH Glycerol dehydro 47.1 29 0.00063 34.3 4.7 74 207-287 10-87 (351)
374 cd08194 Fe-ADH6 Iron-containin 46.5 65 0.0014 32.1 7.2 76 206-286 9-89 (375)
375 PRK08285 cobH precorrin-8X met 46.4 53 0.0012 29.9 5.8 54 204-257 136-191 (208)
376 cd01409 SIRT4 SIRT4: Eukaryoti 46.3 15 0.00032 34.8 2.4 20 271-290 198-217 (260)
377 cd08187 BDH Butanol dehydrogen 45.9 56 0.0012 32.7 6.6 74 208-286 17-95 (382)
378 PRK03363 fixB putative electro 45.6 19 0.00041 35.1 3.0 52 215-269 192-246 (313)
379 cd08183 Fe-ADH2 Iron-containin 45.5 52 0.0011 32.8 6.3 71 208-287 11-85 (374)
380 KOG0369 Pyruvate carboxylase [ 45.0 2.7E+02 0.0059 30.1 11.1 120 17-160 95-222 (1176)
381 cd01411 SIR2H SIR2H: Uncharact 44.7 9.8 0.00021 35.1 0.9 20 271-290 165-184 (225)
382 PRK10867 signal recognition pa 44.6 69 0.0015 32.7 7.0 47 206-252 115-162 (433)
383 cd06311 PBP1_ABC_sugar_binding 44.6 2.6E+02 0.0055 25.8 14.7 149 14-174 110-273 (274)
384 cd02772 MopB_NDH-1_NuoG2 MopB_ 44.3 28 0.0006 35.2 4.2 45 203-247 236-284 (414)
385 cd02072 Glm_B12_BD B12 binding 43.7 36 0.00077 28.4 4.0 31 18-49 98-128 (128)
386 cd06344 PBP1_ABC_ligand_bindin 43.3 71 0.0015 30.9 6.8 61 205-267 51-111 (332)
387 cd02770 MopB_DmsA-EC This CD ( 43.2 23 0.00049 38.1 3.5 106 205-310 81-205 (617)
388 cd02751 MopB_DMSOR-like The Mo 43.0 17 0.00036 39.0 2.4 106 205-310 79-213 (609)
389 cd05005 SIS_PHI Hexulose-6-pho 42.9 49 0.0011 29.0 5.1 66 203-285 18-83 (179)
390 COG2086 FixA Electron transfer 42.8 50 0.0011 31.2 5.2 52 203-254 94-146 (260)
391 cd01410 SIRT7 SIRT7: Eukaryoti 42.7 19 0.00042 32.7 2.4 21 271-291 149-169 (206)
392 PRK13398 3-deoxy-7-phosphohept 42.7 61 0.0013 30.8 5.9 73 204-289 39-121 (266)
393 cd06586 TPP_enzyme_PYR Pyrimid 41.9 1E+02 0.0022 25.8 6.9 43 392-436 47-90 (154)
394 TIGR01357 aroB 3-dehydroquinat 41.8 43 0.00093 33.0 5.0 41 208-249 10-50 (344)
395 TIGR01425 SRP54_euk signal rec 41.8 79 0.0017 32.3 6.9 48 206-253 115-162 (429)
396 PF00465 Fe-ADH: Iron-containi 41.7 18 0.00039 36.0 2.3 75 208-287 11-88 (366)
397 cd08551 Fe-ADH iron-containing 41.7 88 0.0019 31.1 7.3 75 207-286 10-89 (370)
398 TIGR01162 purE phosphoribosyla 41.5 1.8E+02 0.0039 25.2 8.0 78 9-110 6-84 (156)
399 PF10087 DUF2325: Uncharacteri 41.3 70 0.0015 25.0 5.2 54 222-284 2-55 (97)
400 PF07905 PucR: Purine cataboli 41.2 86 0.0019 25.7 6.0 50 205-254 58-107 (123)
401 COG1707 ACT domain-containing 41.0 1.1E+02 0.0025 26.6 6.6 61 201-262 122-183 (218)
402 TIGR00829 FRU PTS system, fruc 40.8 66 0.0014 24.7 4.8 50 233-289 15-64 (85)
403 cd08175 G1PDH Glycerol-1-phosp 40.7 46 0.00099 32.8 5.0 75 208-286 11-89 (348)
404 cd05007 SIS_Etherase N-acetylm 40.5 1.7E+02 0.0037 27.5 8.6 101 15-115 37-158 (257)
405 PF00289 CPSase_L_chain: Carba 40.5 50 0.0011 26.7 4.3 47 14-60 60-108 (110)
406 cd02771 MopB_NDH-1_NuoG2-N7 Mo 40.5 48 0.001 34.1 5.3 44 205-248 252-295 (472)
407 PF02146 SIR2: Sir2 family; I 40.4 19 0.00041 31.8 2.0 30 259-289 146-175 (178)
408 cd02755 MopB_Thiosulfate-R-lik 40.1 15 0.00032 37.8 1.4 103 205-310 77-193 (454)
409 TIGR00679 hpr-ser Hpr(Ser) kin 40.1 69 0.0015 31.0 5.8 49 204-255 67-115 (304)
410 PRK11337 DNA-binding transcrip 40.0 70 0.0015 30.5 6.0 71 203-285 125-195 (292)
411 PTZ00410 NAD-dependent SIR2; P 39.9 13 0.00029 36.6 1.0 21 271-291 199-219 (349)
412 COG2025 FixB Electron transfer 39.4 32 0.0007 33.4 3.5 52 215-269 192-245 (313)
413 COG0252 AnsB L-asparaginase/ar 39.2 2E+02 0.0043 28.6 9.0 56 202-260 240-298 (351)
414 cd02761 MopB_FmdB-FwdB The Mop 39.0 57 0.0012 32.8 5.5 44 203-246 220-267 (415)
415 PRK05954 precorrin-8X methylmu 39.0 86 0.0019 28.4 5.9 53 204-257 130-183 (203)
416 COG2047 Uncharacterized protei 38.9 1.3E+02 0.0029 27.6 7.0 27 13-39 101-127 (258)
417 COG3414 SgaB Phosphotransferas 38.9 45 0.00098 26.1 3.6 55 219-285 2-57 (93)
418 PF12804 NTP_transf_3: MobA-li 38.8 2.4E+02 0.0051 23.7 9.9 94 14-109 24-122 (160)
419 TIGR03845 sulfopyru_alph sulfo 38.6 34 0.00073 29.6 3.2 28 407-435 60-88 (157)
420 TIGR01591 Fdh-alpha formate de 38.4 57 0.0012 35.3 5.7 83 205-288 71-166 (671)
421 PF02776 TPP_enzyme_N: Thiamin 38.4 1.6E+02 0.0035 25.5 7.7 91 341-437 5-96 (172)
422 PRK13982 bifunctional SbtC-lik 38.3 97 0.0021 32.1 6.9 69 352-432 255-333 (475)
423 PRK09130 NADH dehydrogenase su 38.0 45 0.00098 36.3 4.8 38 209-246 428-469 (687)
424 PRK15488 thiosulfate reductase 37.9 26 0.00056 38.7 3.0 102 205-310 120-234 (759)
425 PRK10499 PTS system N,N'-diace 37.9 49 0.0011 26.5 3.9 34 219-252 4-37 (106)
426 COG2204 AtoC Response regulato 37.7 4.8E+02 0.01 27.0 13.0 166 46-251 23-197 (464)
427 PRK10892 D-arabinose 5-phospha 37.6 1.8E+02 0.0038 28.3 8.5 96 18-116 37-135 (326)
428 cd01413 SIR2_Af2 SIR2_Af2: Arc 37.3 25 0.00055 32.3 2.4 20 271-290 165-184 (222)
429 COG1013 PorB Pyruvate:ferredox 37.3 3.9E+02 0.0084 25.8 11.3 115 52-171 65-202 (294)
430 PRK11302 DNA-binding transcrip 37.3 2.5E+02 0.0053 26.5 9.4 89 18-110 119-210 (284)
431 PF10686 DUF2493: Protein of u 37.3 1.6E+02 0.0034 21.8 6.1 48 203-251 15-62 (71)
432 TIGR03705 poly_P_kin polyphosp 37.2 15 0.00033 39.6 1.0 28 145-172 503-530 (672)
433 cd01407 SIR2-fam SIR2 family o 37.1 13 0.00029 34.0 0.5 19 272-290 162-180 (218)
434 cd03377 TPP_PFOR_PNO Thiamine 36.8 28 0.00062 34.5 2.7 32 405-436 151-183 (365)
435 cd02759 MopB_Acetylene-hydrata 36.7 23 0.0005 36.6 2.2 106 205-310 76-197 (477)
436 TIGR01501 MthylAspMutase methy 36.5 55 0.0012 27.6 4.1 29 20-49 102-130 (134)
437 PRK05428 HPr kinase/phosphoryl 36.5 82 0.0018 30.6 5.7 49 204-255 67-115 (308)
438 cd08173 Gro1PDH Sn-glycerol-1- 36.5 74 0.0016 31.2 5.7 71 207-286 11-87 (339)
439 PRK09590 celB cellobiose phosp 36.5 29 0.00062 27.8 2.2 34 219-252 2-35 (104)
440 TIGR00644 recJ single-stranded 36.3 1.8E+02 0.004 30.6 8.9 80 205-290 41-124 (539)
441 cd06338 PBP1_ABC_ligand_bindin 36.2 94 0.002 30.0 6.4 57 210-268 61-118 (345)
442 PRK11557 putative DNA-binding 36.1 3.1E+02 0.0068 25.7 9.8 92 18-115 119-215 (278)
443 cd06347 PBP1_ABC_ligand_bindin 35.9 1.2E+02 0.0026 29.0 7.1 44 210-255 57-100 (334)
444 PRK14138 NAD-dependent deacety 35.8 28 0.00061 32.6 2.4 20 271-290 172-191 (244)
445 COG3925 N-terminal domain of t 35.8 79 0.0017 24.7 4.4 15 276-290 39-53 (103)
446 PRK08286 cbiC cobalt-precorrin 35.7 1.1E+02 0.0023 28.1 6.0 53 204-257 141-194 (214)
447 PRK04175 rpl7ae 50S ribosomal 35.6 1.1E+02 0.0024 25.3 5.6 46 208-253 35-80 (122)
448 cd02757 MopB_Arsenate-R This C 35.4 29 0.00063 36.4 2.8 104 205-310 82-200 (523)
449 COG0549 ArcC Carbamate kinase 35.3 1.4E+02 0.003 28.6 6.8 53 209-285 174-233 (312)
450 TIGR00065 ftsZ cell division p 35.2 1.1E+02 0.0024 30.3 6.6 81 206-286 90-172 (349)
451 TIGR00959 ffh signal recogniti 35.1 1.2E+02 0.0027 30.9 7.1 46 207-252 115-161 (428)
452 COG1737 RpiR Transcriptional r 35.0 4E+02 0.0086 25.3 10.3 94 17-114 120-216 (281)
453 PRK00481 NAD-dependent deacety 34.9 49 0.0011 30.8 3.9 25 207-231 2-26 (242)
454 cd06380 PBP1_iGluR_AMPA N-term 34.5 88 0.0019 30.9 6.0 58 206-267 50-107 (382)
455 COG0846 SIR2 NAD-dependent pro 34.3 22 0.00049 33.3 1.5 51 260-310 165-216 (250)
456 PTZ00409 Sir2 (Silent Informat 34.3 30 0.00064 33.0 2.4 30 259-288 181-210 (271)
457 cd08182 HEPD Hydroxyethylphosp 34.2 70 0.0015 31.8 5.2 72 207-286 10-86 (367)
458 PTZ00186 heat shock 70 kDa pre 34.1 2.6E+02 0.0056 30.4 9.7 61 30-91 162-226 (657)
459 TIGR03600 phage_DnaB phage rep 34.1 4.9E+02 0.011 26.3 11.4 51 236-286 334-388 (421)
460 cd06345 PBP1_ABC_ligand_bindin 33.8 1.4E+02 0.0029 29.0 7.1 44 210-255 57-100 (344)
461 PRK14974 cell division protein 33.5 1E+02 0.0022 30.3 6.1 50 205-254 154-203 (336)
462 PRK09330 cell division protein 33.5 1.1E+02 0.0023 30.8 6.2 82 205-286 85-168 (384)
463 PRK09423 gldA glycerol dehydro 33.5 69 0.0015 31.9 5.0 73 207-286 17-93 (366)
464 TIGR03677 rpl7ae 50S ribosomal 33.2 1.3E+02 0.0028 24.6 5.7 46 208-253 31-76 (117)
465 PF07355 GRDB: Glycine/sarcosi 33.2 1.2E+02 0.0026 29.9 6.2 50 205-254 66-119 (349)
466 PRK06264 cbiC precorrin-8X met 33.1 1.3E+02 0.0028 27.5 6.1 53 204-257 136-189 (210)
467 PRK02261 methylaspartate mutas 33.1 77 0.0017 26.7 4.5 32 17-49 101-132 (137)
468 PRK13663 hypothetical protein; 33.1 75 0.0016 32.0 4.9 36 68-103 156-195 (493)
469 COG1440 CelA Phosphotransferas 32.7 91 0.002 24.8 4.4 55 219-286 2-56 (102)
470 TIGR03405 Phn_Fe-ADH phosphona 32.5 75 0.0016 31.5 5.0 36 207-243 13-48 (355)
471 TIGR01553 formate-DH-alph form 32.4 34 0.00074 39.0 2.8 75 236-310 174-257 (1009)
472 PRK05953 precorrin-8X methylmu 32.3 1.3E+02 0.0028 27.4 5.9 53 204-257 128-181 (208)
473 cd08550 GlyDH-like Glycerol_de 32.3 82 0.0018 31.1 5.3 73 207-286 10-86 (349)
474 PF04015 DUF362: Domain of unk 32.3 1.4E+02 0.0031 26.7 6.5 84 202-285 19-111 (206)
475 TIGR00789 flhB_rel flhB C-term 32.3 59 0.0013 24.8 3.3 33 219-254 16-48 (82)
476 COG1419 FlhF Flagellar GTP-bin 32.2 92 0.002 31.4 5.4 56 217-283 232-287 (407)
477 PRK13600 putative ribosomal pr 31.8 1.6E+02 0.0035 22.6 5.6 46 208-254 18-63 (84)
478 cd07766 DHQ_Fe-ADH Dehydroquin 31.7 1.1E+02 0.0023 29.9 5.9 77 205-285 8-86 (332)
479 PRK10474 putative PTS system f 31.5 1.1E+02 0.0025 23.5 4.8 48 234-288 2-49 (88)
480 cd01743 GATase1_Anthranilate_S 31.5 1.3E+02 0.0027 26.5 5.9 69 37-110 8-79 (184)
481 KOG1182 Branched chain alpha-k 31.3 31 0.00068 33.2 1.9 32 387-418 193-229 (432)
482 PF06711 DUF1198: Protein of u 31.2 38 0.00081 28.5 2.1 31 220-250 10-40 (148)
483 COG1748 LYS9 Saccharopine dehy 30.9 3.2E+02 0.0069 27.6 9.0 97 15-114 57-157 (389)
484 cd06366 PBP1_GABAb_receptor Li 30.9 1.4E+02 0.003 28.9 6.7 45 208-255 55-99 (350)
485 PRK10427 putative PTS system f 30.7 1.1E+02 0.0024 24.9 4.8 49 233-288 20-68 (114)
486 cd01020 TroA_b Metal binding p 30.5 1.7E+02 0.0037 27.5 6.9 51 200-251 187-237 (264)
487 cd08177 MAR Maleylacetate redu 30.4 85 0.0018 30.8 5.0 72 207-286 10-86 (337)
488 PRK05575 cbiC precorrin-8X met 30.4 1.5E+02 0.0032 27.0 6.0 53 204-257 135-188 (204)
489 cd00411 Asparaginase Asparagin 30.3 1E+02 0.0022 30.1 5.5 174 78-255 81-271 (323)
490 TIGR01701 Fdhalpha-like oxidor 30.3 55 0.0012 36.1 3.9 106 205-310 119-234 (743)
491 PRK13602 putative ribosomal pr 30.3 1.5E+02 0.0032 22.5 5.2 45 208-253 16-60 (82)
492 cd02767 MopB_ydeP The MopB_yde 30.1 88 0.0019 33.3 5.3 83 205-288 84-174 (574)
493 PF01248 Ribosomal_L7Ae: Ribos 29.5 1.2E+02 0.0026 23.3 4.8 46 208-253 20-65 (95)
494 PF04405 ScdA_N: Domain of Unk 29.4 44 0.00095 23.5 2.0 39 13-55 2-46 (56)
495 COG0846 SIR2 NAD-dependent pro 29.3 66 0.0014 30.2 3.7 39 208-260 2-40 (250)
496 cd00763 Bacterial_PFK Phosphof 29.0 1.2E+02 0.0025 29.7 5.5 41 15-55 79-119 (317)
497 PRK09129 NADH dehydrogenase su 29.0 1.4E+02 0.0031 33.0 7.0 86 205-290 290-383 (776)
498 cd07039 TPP_PYR_POX Pyrimidine 28.9 2.9E+02 0.0063 23.8 7.6 38 376-416 63-100 (164)
499 PRK02947 hypothetical protein; 28.8 1.8E+02 0.0039 27.1 6.7 97 15-113 28-144 (246)
500 PRK13805 bifunctional acetalde 28.8 1.1E+02 0.0025 34.2 6.2 77 205-286 467-548 (862)
No 1
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1e-94 Score=744.61 Aligned_cols=411 Identities=31% Similarity=0.492 Sum_probs=351.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
+|+++|++++.|+++||++|||+||+++++++|+|++.+|++|.+|||++|+|||+||+|+|||||||++|+|||++|++
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 48999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+||++|+.|++|||+||||.++..+++++||++|+..|++|++||++++.+++++++.+++||++|.++|||||||+||.
T Consensus 81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccchhHHHHHHHHhhhhcccccCCCCCH-HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVN-SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
|++.++++....... ..+...+.+.+ +++++++++|++||||+|++|+|+.++++.+++++|+|++++||++
T Consensus 161 Dv~~~~~~~~~~~~~-------~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~ 233 (550)
T COG0028 161 DVLAAEAEEPGPEPA-------ILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVT 233 (550)
T ss_pred hHhhccccccccccc-------ccccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEE
Confidence 999998765321011 01122232333 8899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------
Q 013746 252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------- 310 (437)
|++|||.+|++||+|+|. ..+.++++||+||+||++|+++.+. +..|.+..++||||
T Consensus 234 t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~--~~~f~~~~~ii~iDidp~ei~k~~~~~~ 311 (550)
T COG0028 234 TLMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG--YSGFAPPAAIIHIDIDPAEIGKNYPVDV 311 (550)
T ss_pred ccCcCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc--hhhhCCcCCEEEEeCChHHhCCCCCCCe
Confidence 999999999999999985 3567889999999999999987665 23333332399998
Q ss_pred -----------hHHhhhhhhHHHHHHHH-----------h-c-cCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHH
Q 013746 311 -----------AIWKKTKDNVLKMEVQL-----------A-K-DVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTM 365 (437)
Q Consensus 311 -----------~l~~~~~~~~~~~~~~~-----------~-~-~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~ 365 (437)
+|.+.+......|.... . . ......+.++++.|++.+ ++|.|+++| |.++.
T Consensus 312 ~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~----~~daiv~~d~G~~~~ 387 (550)
T COG0028 312 PIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELL----PDDAIVVTDVGQHQM 387 (550)
T ss_pred eEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhC----CCCeEEEeCCcHHHH
Confidence 12222211001111110 0 0 111123555666666655 888899888 88888
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|..++ ++..+|++++.++++|+||||+|+|||||++.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 388 w~a~~-~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~iv 458 (550)
T COG0028 388 WAARY-FDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIV 458 (550)
T ss_pred HHHHh-cccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEE
Confidence 88765 588899999999999999999999999999999999999999999999999999999999999865
No 2
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-90 Score=664.02 Aligned_cols=428 Identities=50% Similarity=0.850 Sum_probs=383.6
Q ss_pred CccccccCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEE
Q 013746 3 GSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82 (437)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~ 82 (437)
....++..++.+++++.+++.|+++||+||||+-|.++.+|..++...||+||.+|||++|+|+|++|+|+|||||||++
T Consensus 3 ~~~~~~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lV 82 (571)
T KOG1185|consen 3 SLLFKVDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLV 82 (571)
T ss_pred cchhcccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEE
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 83 VSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 83 t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
++|||++|+++|++||+.+++|||+|.|..++...++|+|||+||++++||+|||+.+++++++++..+++|++.|.+|+
T Consensus 83 vsGPGl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~ 162 (571)
T KOG1185|consen 83 VSGPGLTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGR 162 (571)
T ss_pred ecCChHHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEcCcchhccc-cchhHHH-HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH
Q 013746 163 PGGCYLDLPTDVLHQT-ISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~ 240 (437)
|||+|+++|.|+.... ..+.+.. ..+. + ....++.+.+++..+++++++|++||||++++|.|+.++.+.++|++
T Consensus 163 PG~~yvD~P~d~v~~~~~~e~~~~~~~p~--~-~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~ 239 (571)
T KOG1185|consen 163 PGPVYVDLPADVVLPSKMVEKEIDVSEPQ--P-PIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRK 239 (571)
T ss_pred CCceEEecccceeeeecccccccccCCCC--C-CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHH
Confidence 9999999999954333 2221111 0000 0 01223367788999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------
Q 013746 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------- 310 (437)
Q Consensus 241 lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------- 310 (437)
|.|++|+|++-|+||||++|++||++++.+.+.++++||++|++|+|++|...||.+++|.++.|+||||
T Consensus 240 ~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~ 319 (571)
T KOG1185|consen 240 FVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNF 319 (571)
T ss_pred HHHhcCCCcccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------hHHhhhhh---------------------hHHHHHHHHhccCCCCCcccHHHHHHHHHhccCC-
Q 013746 311 ----------------AIWKKTKD---------------------NVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS- 352 (437)
Q Consensus 311 ----------------~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~- 352 (437)
+|.+.+.+ +..+.++.......|+++.++++.|++.| +
T Consensus 320 ~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L----~~ 395 (571)
T KOG1185|consen 320 VKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELL----PN 395 (571)
T ss_pred CCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhc----CC
Confidence 12222211 11111222334556899999999999888 7
Q ss_pred CCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCc
Q 013746 353 PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 432 (437)
Q Consensus 353 ~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l 432 (437)
+|.|+|.||.|+++.+++.++.+.|++++..+.||+||.|+++|||||+++|+++|+|+-||++|.|+.+|++|++||+|
T Consensus 396 ~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~L 475 (571)
T KOG1185|consen 396 DDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYKL 475 (571)
T ss_pred CCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhcC
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 013746 433 MISSI 437 (437)
Q Consensus 433 ~i~~i 437 (437)
|++.|
T Consensus 476 pvv~v 480 (571)
T KOG1185|consen 476 PVVIV 480 (571)
T ss_pred CeEEE
Confidence 99865
No 3
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=7.5e-88 Score=706.89 Aligned_cols=412 Identities=27% Similarity=0.380 Sum_probs=349.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n 90 (437)
+|+++|+|++.|+++||+||||+||+++++|++++.++ +|++|.+|||++|+||||||+|+| |++|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 57999999999999999999999999999999999654 799999999999999999999999 9999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++|||||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.... ... ......+.+++..+++++++|.+||||+|++|.|+.++++.+++.+|+|++|+||+
T Consensus 162 P~Dv~~~~~~~~~~-~~~------~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~ 234 (588)
T TIGR01504 162 PFDVQVAEIEFDPD-TYE------PLPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVI 234 (588)
T ss_pred CcchhhcccCCccc-ccc------cccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeE
Confidence 99999887653210 000 01112234578889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 251 PTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
||++|||+||++||+++|. ..++++++|||||+||+++++..+.+ +..+.++.++||||
T Consensus 235 tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~-~~~~~~~~~~I~id~d~~~i~~~~~~ 313 (588)
T TIGR01504 235 PTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGS-VDVYTEGRKFVHVDIEPTQIGRVFAP 313 (588)
T ss_pred EcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCc-ccccCCCCeEEEeeCCHHHhcCcCCC
Confidence 9999999999999999984 24568899999999999998765433 23355667899987
Q ss_pred -------------hHHhhhhh--------hHHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 -------------AIWKKTKD--------NVLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 -------------~l~~~~~~--------~~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
+|.+.+.. ....|.+.. . .+..++++..+++.|++.| +++.+++
T Consensus 314 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~d~ivv 389 (588)
T TIGR01504 314 DLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAF----GRDVCYV 389 (588)
T ss_pred CeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHhC----CCCCEEE
Confidence 12121110 001111110 0 0122466666676666666 8899999
Q ss_pred eCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 359 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 359 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|++ +..|.. .+++..+|++++.+++||+|||++|+|||+|++.|+|+||+|+|||||+|++|||+|++|||+|+++|
T Consensus 390 ~D~G~~~~~~~-~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~i 468 (588)
T TIGR01504 390 TTIGLSQIAGA-QMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHV 468 (588)
T ss_pred ECCcHHHHHHH-HhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 9955 445554 45688899999999999999999999999999999999999999999999999999999999999865
No 4
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.7e-87 Score=698.73 Aligned_cols=415 Identities=24% Similarity=0.394 Sum_probs=347.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 4799999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||+.++++++++++.+++|++.|.++|+|||||+||
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhH-HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 172 TDVLHQTISVSE-AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 172 ~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
.|++.++++... ...... .....+...+++..+++++++|++||||+|++|+|++++++.+++++|+|++|+||+
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~ 238 (572)
T PRK08979 163 KDCLNPAILHPYEYPESIK----MRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVV 238 (572)
T ss_pred HhHhhhhhcccccCCcccc----cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 999987765310 000000 000011223467789999999999999999999999989999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
||++|||.||++||+|+|. ..++++++|||||+||+++++..+.+ +..+.++.++||||
T Consensus 239 tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~ 317 (572)
T PRK08979 239 STLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNN-LEKYCPNATILHIDIDPSSISKTVRVD 317 (572)
T ss_pred EcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCc-hhhcCCCCeEEEEECCHHHhCCccCCc
Confidence 9999999999999999984 35678899999999999998765433 33355667899998
Q ss_pred ------------hHHhhhhhh--------HHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCEEEe
Q 013746 311 ------------AIWKKTKDN--------VLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPILVS 359 (437)
Q Consensus 311 ------------~l~~~~~~~--------~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~ 359 (437)
+|.+.+.+. ...|.... . ....++++.++++.|++.+ ++|.+++.
T Consensus 318 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ivv~ 393 (572)
T PRK08979 318 IPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAYDKSSERIKPQQVIETLYKLT----NGDAYVAS 393 (572)
T ss_pred eEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhc----CCCeEEEE
Confidence 111111110 01111111 0 0112455555666666655 88888988
Q ss_pred Ccch-HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 360 EGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 360 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|+++ ..|.. .+++..+|++|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 394 d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 471 (572)
T PRK08979 394 DVGQHQMFAA-LYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKII 471 (572)
T ss_pred CCcHHHHHHH-HhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEE
Confidence 8554 55554 45688899999999999999999999999999999999999999999999999999999999999865
No 5
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=9.8e-87 Score=699.43 Aligned_cols=416 Identities=26% Similarity=0.401 Sum_probs=347.6
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
..+|+++++|++.|+++||+||||+||+++.+|+++|.+ .+|++|.+|||++|+||||||+|+||||+||++|+|||++
T Consensus 18 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~ 97 (587)
T PRK06965 18 AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVT 97 (587)
T ss_pred chhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 456899999999999999999999999999999999975 4799999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
|+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++|+|||||+
T Consensus 98 N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 177 (587)
T PRK06965 98 NAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVD 177 (587)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.......+. ....+...++++.+++++++|++||||+|++|.|++++++.+++++|+|++|+||
T Consensus 178 iP~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv 252 (587)
T PRK06965 178 IPKDVSKTPCEYEYPKSVEM-----RSYNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPV 252 (587)
T ss_pred eChhhhhChhccccCccccc-----cCCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCCE
Confidence 99999988764211000000 0101112346788999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCC-CCceEEEhH-----------
Q 013746 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVD----------- 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~~i~vd----------- 310 (437)
+||++|||.||++||+++|. ..++++++|||||+||++++++.+ +.+..|. ++.++||||
T Consensus 253 ~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~~ 331 (587)
T PRK06965 253 TNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVI-GNPAHFASRPRKIIHIDIDPSSISKRVK 331 (587)
T ss_pred EEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCccccc-CChhhcCCCCceEEEEeCCHHHhCCcCC
Confidence 99999999999999999984 345788999999999999987643 2222243 346899997
Q ss_pred --------------hHHhhhhhh--------HHHHHHH----H--h-----ccCCCCCcccHHHHHHHHHhccCCCCCEE
Q 013746 311 --------------AIWKKTKDN--------VLKMEVQ----L--A-----KDVVPFNFMTPMRIIRDAILGVGSPAPIL 357 (437)
Q Consensus 311 --------------~l~~~~~~~--------~~~~~~~----~--~-----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~ 357 (437)
+|.+.+... ...|... . . ....++++..+++.|++.+ ++|+|+
T Consensus 332 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ii 407 (587)
T PRK06965 332 VDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELT----DGDAFV 407 (587)
T ss_pred CCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhC----CCCeEE
Confidence 121211110 0111100 0 0 0112355555566666555 889999
Q ss_pred EeCcchH-HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCccccc
Q 013746 358 VSEGANT-MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 358 v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~ 436 (437)
+.|+++. .|.. .+++..+|++|+.++++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|+++
T Consensus 408 ~~d~G~~~~~~~-~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~lpvii 486 (587)
T PRK06965 408 CSDVGQHQMWAA-QFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKI 486 (587)
T ss_pred EeCCcHHHHHHH-HhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCeEE
Confidence 9895544 4554 4668889999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 013746 437 I 437 (437)
Q Consensus 437 i 437 (437)
|
T Consensus 487 v 487 (587)
T PRK06965 487 I 487 (587)
T ss_pred E
Confidence 5
No 6
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.3e-86 Score=695.31 Aligned_cols=417 Identities=47% Similarity=0.794 Sum_probs=352.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
.++++|+|++.|+++||+||||+||+++.++++++.+.+|++|.+|||++|+||||||+|+||+|+||++|+|||++|++
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 81 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGL 81 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHH
Confidence 46899999999999999999999999999999988777899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccC--CCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKD--FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~--~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+||++||.|++|||+|+|+.+... .+++.+|++||.++++++|||++++++++++++.++||++.|.++|||||||+|
T Consensus 82 ~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~i 161 (554)
T TIGR03254 82 TALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDL 161 (554)
T ss_pred HHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 999999999999999999998774 367789999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.......... ...+.....+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|+||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~ 238 (554)
T TIGR03254 162 PAAVLGQTMEAEKAKKTLVK---VVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFL 238 (554)
T ss_pred CHHHhhcccccccccccccc---ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEE
Confidence 99999988763211000000 001112233567889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------------
Q 013746 251 PTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------------- 310 (437)
||++|||.||++||+++|...++++++|||||++|++++++.++++...|.++.++||||
T Consensus 239 tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~ 318 (554)
T TIGR03254 239 PMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDI 318 (554)
T ss_pred EcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCH
Confidence 999999999999999999888889999999999999999876665544466677899997
Q ss_pred -----hHHhhhhh----hHHHHHHHH---------h------ccCCCCCcccHHHHHHHHHhccCCC--CCEEEeCcchH
Q 013746 311 -----AIWKKTKD----NVLKMEVQL---------A------KDVVPFNFMTPMRIIRDAILGVGSP--APILVSEGANT 364 (437)
Q Consensus 311 -----~l~~~~~~----~~~~~~~~~---------~------~~~~~~~~~~~~~~i~~~l~~~~~~--~~i~v~~g~~~ 364 (437)
+|.+.++. ....|.... . ....++++..+++.|++.+ ++ +.++++||++.
T Consensus 319 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~~~ivv~d~~~~ 394 (554)
T TIGR03254 319 GSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVL----KDNPDIYLVNEGANT 394 (554)
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhc----CCCCCEEEEeCCchH
Confidence 12222211 011111100 0 1123466666677776665 54 66788888777
Q ss_pred HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 365 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.++..++++..+|++++.+++||+|||++|+|||++++ ++|+||+++|||||+|++|||+|++||++|++.|
T Consensus 395 ~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~v 466 (554)
T TIGR03254 395 LDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLPVCVV 466 (554)
T ss_pred HHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCCEEEE
Confidence 77777777888999999999999999999999999998 5899999999999999999999999999999764
No 7
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-86 Score=695.88 Aligned_cols=415 Identities=26% Similarity=0.419 Sum_probs=349.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
++++++++|++.|+++||+||||+||+++.+|++++.+ ++|++|.+|||++|+||||||+|+||||+||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 56799999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++|||||||+|
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.......+. ....+...+++..+++++++|.+|+||+|++|.|++++++.+++++|||++|+||+
T Consensus 168 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~ 242 (566)
T PRK07282 168 PKDVSALETDFIYDPEVNL-----PSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVV 242 (566)
T ss_pred Chhhhhhhhcccccccccc-----cCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence 9999988765211000000 01112223567789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
||++|||.||++||+++|. ..++++++|||||+||+++++..+. .+..|.++.++||||
T Consensus 243 tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~-~~~~~~~~~~~i~id~d~~~i~~~~~~~ 321 (566)
T PRK07282 243 TTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTG-NPKTFAKNAKVAHIDIDPAEIGKIIKTD 321 (566)
T ss_pred eccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-ChhhcCCCCeEEEEECCHHHhCCCCCCC
Confidence 9999999999999999984 3557889999999999999876543 333455667899987
Q ss_pred ------------hHHhhhhh--hHHHHHHHH------h----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcc-hHH
Q 013746 311 ------------AIWKKTKD--NVLKMEVQL------A----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA-NTM 365 (437)
Q Consensus 311 ------------~l~~~~~~--~~~~~~~~~------~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~-~~~ 365 (437)
+|.+.+.. ....|.... . ....++++..+++.|++.+ +++++++.|++ +..
T Consensus 322 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~----~~~~ivv~d~G~~~~ 397 (566)
T PRK07282 322 IPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVRSYDKKERVVQPQAVIERIGELT----NGDAIVVTDVGQHQM 397 (566)
T ss_pred eEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhchhccCcCCCcCHHHHHHHHHhhc----CCCeEEEECCcHHHH
Confidence 11111111 011121111 0 0122455555666665554 88899998854 555
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|..+ +++..+|++++.+++||+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 398 ~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~v 468 (566)
T PRK07282 398 WAAQ-YYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVV 468 (566)
T ss_pred HHHH-hcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 5544 5688889999999999999999999999999999999999999999999999999999999999865
No 8
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.1e-86 Score=696.25 Aligned_cols=416 Identities=24% Similarity=0.367 Sum_probs=347.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
++|++|+|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|+|||+||+|+|||||||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 4799999999999999999999999999999999976 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.+....+++.+|++|+..+++++|||++++++++++++.+++||+.|.++|+|||||+||
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++.+.....+.. .....+...+++..+++++++|++|+||+|++|.|++++++.+++++|+|++|+||+|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t 239 (574)
T PRK07979 163 KDILNPANKLPYVWPESVS---MRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVS 239 (574)
T ss_pred hhhhhhhhccccccCcccc---cccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence 9999765432100000000 0001112234678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------
Q 013746 252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------- 310 (437)
|++|||.||++||+++|. ..++++++|||||+||++++++.+.+ +..|.++.++||||
T Consensus 240 t~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~~ 318 (574)
T PRK07979 240 SLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNN-LAKYCPNATVLHIDIDPTSISKTVTADI 318 (574)
T ss_pred ccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCC-hhhcCCCCeEEEEECCHHHhCCcccCCe
Confidence 999999999999999984 35678999999999999998765433 23355667899997
Q ss_pred -----------hHHhhhhhh--------HHHHHHHH------h-----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC
Q 013746 311 -----------AIWKKTKDN--------VLKMEVQL------A-----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 360 (437)
Q Consensus 311 -----------~l~~~~~~~--------~~~~~~~~------~-----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~ 360 (437)
+|.+.+.+. ...|.+.. . ....++++..+++.|++.+ ++|++++.|
T Consensus 319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ivv~d 394 (574)
T PRK07979 319 PIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLT----KGDAYVTSD 394 (574)
T ss_pred EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhc----CCCEEEEeC
Confidence 111211110 01111000 0 0112355555666666555 888989888
Q ss_pred cch-HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 GAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 g~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+++ ..|..+ +++..+|.+|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||+||++.|
T Consensus 395 ~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~iv 471 (574)
T PRK07979 395 VGQHQMFAAL-YYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVL 471 (574)
T ss_pred CcHHHHHHHH-hcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 554 555554 5688899999999999999999999999999999999999999999999999999999999999864
No 9
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.6e-86 Score=692.85 Aligned_cols=416 Identities=24% Similarity=0.389 Sum_probs=349.9
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..+++++|+|++.|+++||+||||+||+++++|++++.+++|++|.+|||++|+||||||+|+|||||||++|+|||++|
T Consensus 12 ~~~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N 91 (570)
T PRK06725 12 CEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATN 91 (570)
T ss_pred cccccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 34689999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 92 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 171 (570)
T PRK06725 92 LVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDI 171 (570)
T ss_pred HHHHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.......+. ......+.+++..+++++++|++||||+|++|.|++++++.++|++|||++|+||+
T Consensus 172 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~ 246 (570)
T PRK06725 172 PKDVQNEKVTSFYNEVVEI-----PGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVV 246 (570)
T ss_pred ccchhhcccccccCccccc-----ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 9999988764211100000 01112234677889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
||++|||.||++||+++|. ..++++++|||||+||+++++..+.+ ...+.++.++||||
T Consensus 247 tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~ 325 (570)
T PRK06725 247 STLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGK-LELFSPHSKKVHIDIDPSEFHKNVAVE 325 (570)
T ss_pred ECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCc-ccccCCCCeEEEEeCCHHHhCCCCCCC
Confidence 9999999999999999984 35578999999999999998765433 33355667899987
Q ss_pred ------------hHHhhhhhh-HHHH-------HHHH----hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcch-HH
Q 013746 311 ------------AIWKKTKDN-VLKM-------EVQL----AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGAN-TM 365 (437)
Q Consensus 311 ------------~l~~~~~~~-~~~~-------~~~~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~-~~ 365 (437)
+|.+.+... ...| +... .....++++..+++.|++.+ ++|.|++.|+++ ..
T Consensus 326 ~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~d~iiv~d~g~~~~ 401 (570)
T PRK06725 326 YPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVSELT----NGEAIVTTEVGQHQM 401 (570)
T ss_pred eEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhC----CCCcEEEeCCcHHHH
Confidence 111111110 0011 1100 01123455555566665554 889999999554 44
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.. .+++..+|++++.+++||+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 402 ~~~-~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~v 472 (570)
T PRK06725 402 WAA-HFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVF 472 (570)
T ss_pred HHH-HhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEE
Confidence 554 45688889999999999999999999999999999999999999999999999999999999999764
No 10
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.7e-86 Score=695.97 Aligned_cols=418 Identities=27% Similarity=0.384 Sum_probs=346.8
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 013746 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~ 88 (437)
+.++||++|+|++.|+++||+||||+||+++++|+++|.+ ++|++|.+|||++|+||||||+|+||||+||++|+|||+
T Consensus 7 ~~~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 86 (595)
T PRK09107 7 MPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGA 86 (595)
T ss_pred hhhhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 4466899999999999999999999999999999999965 589999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 89 ~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
+|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++|||||||
T Consensus 87 ~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l 166 (595)
T PRK09107 87 TNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVV 166 (595)
T ss_pred hHHHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccc--hHHHHHHHHHHhC
Q 013746 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR--AEGELKKLVESTG 246 (437)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~--~~~~l~~lae~~g 246 (437)
+||.|++.++++.......+. .....+.+.++++.+++++++|++|+||+|++|.|+.+++ +.+++++|+|++|
T Consensus 167 ~iP~Dv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg 242 (595)
T PRK09107 167 DIPKDVQFATGTYTPPQKAPV----HVSYQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTG 242 (595)
T ss_pred ecCCChhhccccccccccccc----ccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHC
Confidence 999999877654211100000 0011122345678899999999999999999999998775 8899999999999
Q ss_pred CCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH---------
Q 013746 247 IPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD--------- 310 (437)
Q Consensus 247 ~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd--------- 310 (437)
+||+||++|||+||++||+|+|. ...+++++|||||+||+++++..+. .+..|.++.++||||
T Consensus 243 ~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~-~~~~~~~~~~~I~id~d~~~i~~~ 321 (595)
T PRK09107 243 FPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITG-RLDAFSPNSKKIHIDIDPSSINKN 321 (595)
T ss_pred CCEEECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCeEEEEECCHHHhCCC
Confidence 99999999999999999999984 2456889999999999999876543 333355667899987
Q ss_pred ----------------hHHhhhhhh--------HHHHHH----HHh-------ccCCCCCcccHHHHHHHHHhccCC-CC
Q 013746 311 ----------------AIWKKTKDN--------VLKMEV----QLA-------KDVVPFNFMTPMRIIRDAILGVGS-PA 354 (437)
Q Consensus 311 ----------------~l~~~~~~~--------~~~~~~----~~~-------~~~~~~~~~~~~~~i~~~l~~~~~-~~ 354 (437)
+|.+.+.+. ...|.. ... ....++++..+++.|++.+ + +|
T Consensus 322 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~d 397 (595)
T PRK09107 322 VRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAYTPSDDVIMPQYAIQRLYELT----KGRD 397 (595)
T ss_pred CCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHHhC----CCCC
Confidence 111211110 011110 000 0112355555566665555 6 46
Q ss_pred CEEEeCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcc
Q 013746 355 PILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIM 433 (437)
Q Consensus 355 ~i~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~ 433 (437)
.+++.|++ +..|. ..+++..+|++|+.+++||+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|
T Consensus 398 ~iv~~d~G~~~~~~-~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp 476 (595)
T PRK09107 398 TYITTEVGQHQMWA-AQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLP 476 (595)
T ss_pred eEEEECCcHHHHHH-HHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCC
Confidence 77888855 44555 45678889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 013746 434 ISSI 437 (437)
Q Consensus 434 i~~i 437 (437)
+++|
T Consensus 477 vi~v 480 (595)
T PRK09107 477 VKIF 480 (595)
T ss_pred eEEE
Confidence 9865
No 11
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=7.5e-86 Score=692.66 Aligned_cols=410 Identities=25% Similarity=0.384 Sum_probs=346.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
+|+++++|++.|+++||++|||+||+++.+|++++.+.+|++|.+|||++|+||||||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 57999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|.++| |||||+||.
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~ 159 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR 159 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred chhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
|++.++++.... .+ .+.....+++..+++++++|++|+||+|++|.|++++++.+++++|||++|+||+||
T Consensus 160 Dv~~~~~~~~~~--~~-------~~~~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt 230 (579)
T TIGR03457 160 DYFYGEIDVEIP--RP-------VRLDRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNS 230 (579)
T ss_pred chhhhhcccccC--cc-------cccCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEc
Confidence 999888753211 00 011233457788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccC--CCCCCCCCceEEEhH-------------
Q 013746 253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 253 ~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~--~~~~~~~~~~~i~vd------------- 310 (437)
++|||.||++||+++|. ..++++++|||||+||++++++.++. ....+.++.++||||
T Consensus 231 ~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~ 310 (579)
T TIGR03457 231 YLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVT 310 (579)
T ss_pred ccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCC
Confidence 99999999999999994 34578999999999999998643321 112344567899997
Q ss_pred ------------hHHhhhhh----------------hHHHHHHHHh-------------------ccCCCCCcccHHHHH
Q 013746 311 ------------AIWKKTKD----------------NVLKMEVQLA-------------------KDVVPFNFMTPMRII 343 (437)
Q Consensus 311 ------------~l~~~~~~----------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~i 343 (437)
+|.+.+.. ....|..... ....++++.++++.+
T Consensus 311 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 390 (579)
T TIGR03457 311 VGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLREL 390 (579)
T ss_pred eeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHH
Confidence 11121211 0011111000 011235555556666
Q ss_pred HHHHhccCCCCCEEEeCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHH
Q 013746 344 RDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAV 422 (437)
Q Consensus 344 ~~~l~~~~~~~~i~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~ 422 (437)
++.+ +++++++.|++ +..|. ..+++..+|++++.++++|+|||++|+|||+++++|+|+||+++|||||+|++|
T Consensus 391 ~~~l----~~~~iv~~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~ 465 (579)
T TIGR03457 391 EKAM----PEDAIVSTDIGNINSVA-NSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMN 465 (579)
T ss_pred HHhC----CCCeEEEECCchhHHHH-HHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccHH
Confidence 5555 88999999954 44555 445688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccccC
Q 013746 423 EVEVWLSCIIMISSI 437 (437)
Q Consensus 423 eL~Ta~r~~l~i~~i 437 (437)
||+|++||++|++.|
T Consensus 466 eL~Tavr~~lpvi~v 480 (579)
T TIGR03457 466 EIMTAVRHDIPVTAV 480 (579)
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999999764
No 12
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-86 Score=687.54 Aligned_cols=412 Identities=31% Similarity=0.507 Sum_probs=351.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.+|+++++|++.|+++||++|||+||+++.++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~ 82 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNG 82 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHH
Confidence 46899999999999999999999999999999999977789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|.++|+|||||+||
T Consensus 83 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 83 MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++.... ..+. ......+.++++.+++++++|.+||||+|++|.|++++++.+++++|||++|+||+|
T Consensus 163 ~dv~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~t 236 (542)
T PRK05858 163 MDHAFSMADDDGR-PGAL-----TELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLM 236 (542)
T ss_pred hhhhhcccccccc-cccc-----ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEE
Confidence 9999888753210 0000 011123346788899999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH---------------------
Q 013746 252 TPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD--------------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd--------------------- 310 (437)
|++|||.||++||+|+|....+++++||+||.+|+++++..++++ |.++.++||||
T Consensus 237 t~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~ 313 (542)
T PRK05858 237 NGMGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV---FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLS 313 (542)
T ss_pred cCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc---cCCCCEEEEECCCHHHhcCCCCCceEEeCCHH
Confidence 999999999999999998888899999999999999876543332 34457899997
Q ss_pred ----hHHhhhhh--hHHHHHHH--------H-------hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCc-chHHHHH
Q 013746 311 ----AIWKKTKD--NVLKMEVQ--------L-------AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVG 368 (437)
Q Consensus 311 ----~l~~~~~~--~~~~~~~~--------~-------~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g-~~~~~~~ 368 (437)
+|.+.+.. ....|... . .....++++.++++.|++.+ |++.+++.|+ .+..|..
T Consensus 314 ~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv~d~g~~~~~~~ 389 (542)
T PRK05858 314 AILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLL----DRDAIVIGDGGDFVSYAG 389 (542)
T ss_pred HHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhc----CCCeEEEECCcHHHHHHH
Confidence 11111111 00011100 0 01123466666666666655 8899999985 4444554
Q ss_pred HHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 369 RAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.+++..+|++++.++++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 390 -~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~iv 457 (542)
T PRK05858 390 -RYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSV 457 (542)
T ss_pred -HHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEE
Confidence 45688889999999899999999999999999999999999999999999999999999999999865
No 13
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=9.9e-86 Score=692.83 Aligned_cols=412 Identities=27% Similarity=0.385 Sum_probs=348.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n 90 (437)
.|+++++|++.|+++||+||||+||+++.+|++++.++ +|++|.+|||++|+|||+||+|+| |+|+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 48999999999999999999999999999999999754 799999999999999999999999 9999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++|+++||.+++|||+|+|++++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++|+|||||+|
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDL 162 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++....... ......+.+++..+++++++|++||||+|++|.|+.++++.+++++|+|++|+||+
T Consensus 163 P~Dv~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~ 235 (591)
T PRK11269 163 PFDVQVAEIEFDPDTYE-------PLPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVI 235 (591)
T ss_pred Chhhhhccccccccccc-------ccccCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeE
Confidence 99999877642211000 01122334577889999999999999999999999988999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccHH--------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 251 PTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
||++|||+||++||+++|.. .++++++||+||+||++++++.+.+ +..+.++.++||||
T Consensus 236 tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~i~Vd~d~~~~~~~~~~ 314 (591)
T PRK11269 236 PTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGS-VEVYTKGRKFVHVDIEPTQIGRVFGP 314 (591)
T ss_pred ecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCc-hhhcCCCCeEEEeeCCHHHhCCCCCC
Confidence 99999999999999999842 3567899999999999998765433 33355667899987
Q ss_pred -------------hHHhhhhh--------hHHHHHHHH-------h----ccCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 -------------AIWKKTKD--------NVLKMEVQL-------A----KDVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 -------------~l~~~~~~--------~~~~~~~~~-------~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
.|.+.++. ....|.... . ..+.++++..+++.|++.+ +++++++
T Consensus 315 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~d~ivv 390 (591)
T PRK11269 315 DLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTHFDNVPIKPQRVYEEMNKAF----GRDTCYV 390 (591)
T ss_pred CeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhccCCCCCcCHHHHHHHHHHhc----CCCcEEE
Confidence 11121211 011121111 0 0122455556666666655 8899999
Q ss_pred eCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 359 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 359 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|++ +..|.. .+++..+|+.++.++++|+|||++|+|||+|+++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 391 ~d~g~~~~~~~-~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~v 469 (591)
T PRK11269 391 STIGLSQIAAA-QFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHV 469 (591)
T ss_pred ECCcHHHHHHH-HhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeEEE
Confidence 9854 455554 45688889999999999999999999999999999999999999999999999999999999999865
No 14
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=8.3e-86 Score=691.00 Aligned_cols=420 Identities=47% Similarity=0.790 Sum_probs=352.9
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.+|+++++|++.|+++||+||||+||+.+.++++++.+++|++|.+|||++|+|||+||+|+|||||||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45799999999999999999999999999999998877789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccC--CCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKD--FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~--~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
++||++||.+++|||+|+|+.++.. .+++.+|++||.++++++|||++++++++++++.+++||+.|+++|||||||+
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLD 167 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEE
Confidence 9999999999999999999988764 45678999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.......+.. ...+...+.+++..+++++++|++||||+|++|.|++++++.+++++|||++|+||
T Consensus 168 iP~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV 244 (569)
T PRK09259 168 LPAKVLAQTMDADEALTSLVK---VVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPF 244 (569)
T ss_pred eCHHHhhCccccccccccccc---ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCE
Confidence 999999988763211000000 00111233456788999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------------
Q 013746 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------------- 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------------- 310 (437)
+||++|||.||++||+|+|...++++++|||||+||++++++.++++...|.++.++||||
T Consensus 245 ~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D 324 (569)
T PRK09259 245 LPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGD 324 (569)
T ss_pred EecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecC
Confidence 9999999999999999999888888999999999999998766544433455667899987
Q ss_pred ------hHHhhhhh----hHHHHHHHH------------h---ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchHH
Q 013746 311 ------AIWKKTKD----NVLKMEVQL------------A---KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 365 (437)
Q Consensus 311 ------~l~~~~~~----~~~~~~~~~------------~---~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~ 365 (437)
+|.+.+.. ....|.... . ....++++.++++.|++.++. ++|.++++||++..
T Consensus 325 ~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~--~~d~iv~~~~~~~~ 402 (569)
T PRK09259 325 IGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKE--NPDIYLVNEGANTL 402 (569)
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCC--CCCEEEEeCchHHH
Confidence 12222211 011111100 0 012346666677777776621 23677888887777
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
++..++++...|++++.++++|+|||++|+|||++++ ++|+||+++|||||+|++|||+|++||++|++.|
T Consensus 403 ~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~v 473 (569)
T PRK09259 403 DLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVV 473 (569)
T ss_pred HHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEE
Confidence 7777777888999999999999999999999999999 6999999999999999999999999999999865
No 15
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=1.4e-85 Score=687.17 Aligned_cols=409 Identities=25% Similarity=0.417 Sum_probs=346.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
|+++++|++.|+++||++|||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999997778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
|+++||.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|.++|||||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
++.++++.+.. .+ .......++++.+++++++|++||||+|++|.|+.++++.+++++|||++|+||+||+
T Consensus 161 v~~~~~~~~~~--~~-------~~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 231 (548)
T PRK08978 161 IQLAEGELEPH--LT-------TVENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATL 231 (548)
T ss_pred hhhcccccccc--cc-------ccCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcc
Confidence 99877652110 00 1112334577889999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh----H----------
Q 013746 254 MGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA----I---------- 312 (437)
Q Consensus 254 ~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~----l---------- 312 (437)
+|||.||++||+++|. ..++++++|||||++|+++++..+ ++...|.+..++||||. +
T Consensus 232 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 310 (548)
T PRK08978 232 KGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVT-GKLNTFAPHAKVIHLDIDPAEINKLRQAHVAL 310 (548)
T ss_pred ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCcccc-CCccccCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 9999999999999984 345688999999999999987543 33334566678999971 1
Q ss_pred -------Hhhhhhh--HHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCc-chHHHHHHHh
Q 013746 313 -------WKKTKDN--VLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAV 371 (437)
Q Consensus 313 -------~~~~~~~--~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g-~~~~~~~~~~ 371 (437)
.+.+.+. ...|.... . ....++++..+++.|++.+ +++.+++.|+ .+..|..+ +
T Consensus 311 ~~d~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~iiv~d~g~~~~~~~~-~ 385 (548)
T PRK08978 311 QGDLNALLPALQQPLNIDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRK----PADTVVTTDVGQHQMWVAQ-H 385 (548)
T ss_pred ecCHHHHHHHHHHhccchHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhC----CCCcEEEecCcHHHHHHHH-h
Confidence 1111110 01111110 0 0112344445555565554 8899999994 45555554 5
Q ss_pred hhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 372 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 372 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
++..+|++++.++++|+|||++|+|||+|+++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 386 ~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~iv 451 (548)
T PRK08978 386 MRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIV 451 (548)
T ss_pred cccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 688899999999999999999999999999999999999999999999999999999999999864
No 16
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.9e-85 Score=687.18 Aligned_cols=414 Identities=25% Similarity=0.377 Sum_probs=346.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.+|+++++|++.|+++||++|||+||+++++|++++.+.+|++|.||||++|+||||||+|+||||+||++|+|||++|+
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~ 85 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNL 85 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHH
Confidence 45899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|.++|||||||+||
T Consensus 86 ~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 86 VTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++.......+. ....+...++++.+++++++|.+||||+|++|.|++++++.+++++|||++|+||+|
T Consensus 166 ~dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~t 240 (561)
T PRK06048 166 KDVTTAEIDFDYPDKVEL-----RGYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTT 240 (561)
T ss_pred hhhhhcccccccCccccc-----ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEE
Confidence 999987764211000000 011122235677899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccHH-------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------
Q 013746 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------- 310 (437)
|++|||.||++||+++|.. .++++++|||||+||+++++..+. .+..+.+..++||||
T Consensus 241 t~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~I~id~d~~~~~~~~~~~~ 319 (561)
T PRK06048 241 TLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTG-KLASFAPNAKIIHIDIDPAEISKNVKVDV 319 (561)
T ss_pred ccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-ChhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 9999999999999999852 467899999999999999875543 233355667899987
Q ss_pred -----------hHHhhhhhh-HHHHHH----HHh-------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCc-chHHH
Q 013746 311 -----------AIWKKTKDN-VLKMEV----QLA-------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMD 366 (437)
Q Consensus 311 -----------~l~~~~~~~-~~~~~~----~~~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g-~~~~~ 366 (437)
+|.+.+... ...|.+ ... ....++++..+++.|++.+ | +.+++.|+ .+..|
T Consensus 320 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~----p-~~iiv~d~g~~~~~ 394 (561)
T PRK06048 320 PIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLKYKEREDVIKPQYVIEQIYELC----P-DAIIVTEVGQHQMW 394 (561)
T ss_pred EEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhC----C-CcEEEEcCcHHHHH
Confidence 111111110 111111 000 1123344444555554433 6 68888884 45555
Q ss_pred HHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 367 VGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..+ +++..+|++|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++|||+|+++|
T Consensus 395 ~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~v 464 (561)
T PRK06048 395 AAQ-YFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVA 464 (561)
T ss_pred HHH-hcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEE
Confidence 544 5688889999999999999999999999999999999999999999999999999999999998765
No 17
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.6e-85 Score=689.42 Aligned_cols=417 Identities=24% Similarity=0.368 Sum_probs=344.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..|+++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+||||||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34799999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.++||++.|.++|||||||+|
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.+..+... ..+...+ .....+...+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|+||+
T Consensus 162 P~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~ 238 (574)
T PRK06466 162 PKDMTNPAEKFEY--EYPKKVK-LRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVT 238 (574)
T ss_pred CHhHhhhhhcccc--ccCcccc-cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 9999764322110 0000000 000111223456789999999999999999999999988999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
+|++|||.||++||+++|. ..++++++||+||++|++++++.+. .+..+.++.++||||
T Consensus 239 tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~-~~~~~~~~~~vi~id~d~~~i~~~~~~~ 317 (574)
T PRK06466 239 NTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTN-GPAKFCPNAKIIHIDIDPASISKTIKAD 317 (574)
T ss_pred EcCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCeEEEEECCHHHhCCccCCC
Confidence 9999999999999999984 3456889999999999999876543 333355667899997
Q ss_pred ------------hHHhhhhhh--------HHHHHHHH-----h----c----cCCCCCcccHHHHHHHHHhccCCCCCEE
Q 013746 311 ------------AIWKKTKDN--------VLKMEVQL-----A----K----DVVPFNFMTPMRIIRDAILGVGSPAPIL 357 (437)
Q Consensus 311 ------------~l~~~~~~~--------~~~~~~~~-----~----~----~~~~~~~~~~~~~i~~~l~~~~~~~~i~ 357 (437)
+|.+.+... ...|.... . . ...++++..+++.|++.+ +++.|+
T Consensus 318 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~iv 393 (574)
T PRK06466 318 IPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVT----NGDAYV 393 (574)
T ss_pred eEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhC----CCCeEE
Confidence 111111110 01111000 0 0 112355555566665544 888899
Q ss_pred EeCcch-HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCccccc
Q 013746 358 VSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 358 v~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~ 436 (437)
+.|+++ ..|. ..+++..+|++|+.++++|+|||++|+|||++++.|+|+||+|+|||||+|++|||+|++|||+|++.
T Consensus 394 ~~d~g~~~~~~-~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~i 472 (574)
T PRK06466 394 TSDVGQHQMFA-AQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKI 472 (574)
T ss_pred EECCcHHHHHH-HHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence 999554 4454 45668888999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 013746 437 I 437 (437)
Q Consensus 437 i 437 (437)
|
T Consensus 473 v 473 (574)
T PRK06466 473 I 473 (574)
T ss_pred E
Confidence 5
No 18
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=3.3e-85 Score=686.19 Aligned_cols=423 Identities=25% Similarity=0.408 Sum_probs=352.5
Q ss_pred CCCccccccCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEE
Q 013746 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79 (437)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v 79 (437)
|++|.-+.. +.+++++++|++.|+++||+||||+||+++.+|+++|.++ +|++|.+|||++|+||||||+|+||||+|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv 79 (564)
T PRK08155 1 MASSGTTST-RKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV 79 (564)
T ss_pred CCCCCCCcc-CCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE
Confidence 555554433 3357999999999999999999999999999999999754 79999999999999999999999999999
Q ss_pred EEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhh
Q 013746 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV 159 (437)
Q Consensus 80 ~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 159 (437)
|++|+|||++|+++||++||.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|.
T Consensus 80 ~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~ 159 (564)
T PRK08155 80 CMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQ 159 (564)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHH
Q 013746 160 SGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239 (437)
Q Consensus 160 ~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~ 239 (437)
++|||||||+||.|++.++++..... .+ ........++++.+++++++|++||||+|++|.|++++++.++++
T Consensus 160 ~~~~GPV~i~iP~Dv~~~~~~~~~~~-~~------~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~ 232 (564)
T PRK08155 160 SGRPGPVWIDIPKDVQTAVIELEALP-AP------AEKDAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARAR 232 (564)
T ss_pred cCCCCcEEEEcCHhHHhhhcccccCC-Cc------cccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHH
Confidence 99999999999999998876532110 00 001122345677899999999999999999999999888999999
Q ss_pred HHHHHhCCCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--
Q 013746 240 KLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-- 310 (437)
Q Consensus 240 ~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-- 310 (437)
+|||++|+||+||++|||.||++||+++|. ..++++++|||||++|+++++..+. ....+.+..++||||
T Consensus 233 ~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~-~~~~~~~~~~~I~id~d 311 (564)
T PRK08155 233 ELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIG-KTEQFCPNAKIIHVDID 311 (564)
T ss_pred HHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-CHhhcCCCCeEEEEECC
Confidence 999999999999999999999999999985 2456889999999999999876543 233355667899987
Q ss_pred -----------------------hHHhhhhh-hHHHHHHHH-----------hccCCCCCcccHHHHHHHHHhccCCCCC
Q 013746 311 -----------------------AIWKKTKD-NVLKMEVQL-----------AKDVVPFNFMTPMRIIRDAILGVGSPAP 355 (437)
Q Consensus 311 -----------------------~l~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (437)
+|.+.+.. ....|.+.. .....++++..+++.|++.+ |++.
T Consensus 312 ~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l----~~~~ 387 (564)
T PRK08155 312 RAELGKIKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACV----DDNA 387 (564)
T ss_pred HHHhCCCcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhChhhcccCCCCcCHHHHHHHHHHhC----CCCe
Confidence 11111111 011111110 01122455555566665555 8899
Q ss_pred EEEeCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCccc
Q 013746 356 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 434 (437)
Q Consensus 356 i~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i 434 (437)
+++.|++ +..|..+ +++..+|++|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|+
T Consensus 388 iv~~D~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv 466 (564)
T PRK08155 388 IITTDVGQHQMWTAQ-AYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDV 466 (564)
T ss_pred EEEECCchHHHHHHH-hccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCe
Confidence 9988854 5556554 5688889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 013746 435 SSI 437 (437)
Q Consensus 435 ~~i 437 (437)
+.|
T Consensus 467 i~v 469 (564)
T PRK08155 467 KII 469 (564)
T ss_pred EEE
Confidence 764
No 19
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.9e-85 Score=683.71 Aligned_cols=414 Identities=27% Similarity=0.424 Sum_probs=347.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+++++++|++.|+++||+||||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 4789999999999999999999999999999999965 489999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||+.++++++++++.+++|++.|+++|||||||+||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++.......+. ....+.+.++++.+++++++|.+|+||+|++|.|++++++.+++++|+|++++||++
T Consensus 162 ~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~t 236 (563)
T PRK08527 162 KDVTATLGEFEYPKEISL-----KTYKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVE 236 (563)
T ss_pred HhHhhhhhcccccccccc-----ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEE
Confidence 999877653210000000 001112234678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------
Q 013746 252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------- 310 (437)
|++|||+||++||+++|. ..++++++|||||+||+++++..+ +.+..+.++.++||||
T Consensus 237 t~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 315 (563)
T PRK08527 237 TLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVT-GKLSEFAKHAKIIHVDIDPSSISKIVNADY 315 (563)
T ss_pred ccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCcccc-CChhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 999999999999999985 356789999999999999987654 3333455667899987
Q ss_pred -----------hHHhhhhh----hHHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcc-h
Q 013746 311 -----------AIWKKTKD----NVLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA-N 363 (437)
Q Consensus 311 -----------~l~~~~~~----~~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~-~ 363 (437)
+|.+.++. ....|.+.. . ....++++.++++.+++.+ +++.+++.|++ +
T Consensus 316 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~iv~~d~g~~ 391 (563)
T PRK08527 316 PIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPLSYEDSDEVLKPQWVIERVGELL----GDDAIISTDVGQH 391 (563)
T ss_pred EEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhC----CCCeEEEECCcHH
Confidence 11121211 011121111 0 0112455555566665555 88898988854 5
Q ss_pred HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 364 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..|..+ +++...|++|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++|||+|++.|
T Consensus 392 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~v 464 (563)
T PRK08527 392 QMWVAQ-FYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINI 464 (563)
T ss_pred HHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEE
Confidence 556655 4578889999999999999999999999999999999999999999999999999999999999864
No 20
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=8.6e-85 Score=688.30 Aligned_cols=417 Identities=25% Similarity=0.395 Sum_probs=347.7
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.+++|+++++|++.|+++||+||||+||+++.+|+++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|
T Consensus 15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G 94 (616)
T PRK07418 15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG 94 (616)
T ss_pred CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3466899999999999999999999999999999999964 269999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCce
Q 013746 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG 165 (437)
Q Consensus 86 pG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GP 165 (437)
||++|+++||++||.|++|||+|+|+.++...+++.||++||..+++++|||++++.+++++++.+++|++.|.++||||
T Consensus 95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 174 (616)
T PRK07418 95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGP 174 (616)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 166 CYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 166 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
|||+||.|++.++++.......... .......+.++++.+++++++|++||||+|++|.|++++++.++|++|||++
T Consensus 175 v~l~iP~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l 251 (616)
T PRK07418 175 VLIDIPKDVGQEEFDYVPVEPGSVK---PPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAERF 251 (616)
T ss_pred EEEecchhhhhchhcccccCccccc---cCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHHHH
Confidence 9999999999877652110000000 0011112346788999999999999999999999999889999999999999
Q ss_pred CCCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------
Q 013746 246 GIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------- 310 (437)
Q Consensus 246 g~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------- 310 (437)
|+||++|++|||+||++||+++|. ..++++++|||||+||+++++..+. .+..|.++.++||||
T Consensus 252 ~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~ig~ 330 (616)
T PRK07418 252 QIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTG-KLDEFASRAKVIHIDIDPAEVGK 330 (616)
T ss_pred CCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccC-ChhhcCCCCeEEEEeCCHHHhCC
Confidence 999999999999999999999984 3567899999999999999876543 233455667899997
Q ss_pred -----------------hHHhhhhhh-----HHHHHHHH-------h----ccCCCCCcccHHHHHHHHHhccCCCCCEE
Q 013746 311 -----------------AIWKKTKDN-----VLKMEVQL-------A----KDVVPFNFMTPMRIIRDAILGVGSPAPIL 357 (437)
Q Consensus 311 -----------------~l~~~~~~~-----~~~~~~~~-------~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~ 357 (437)
+|.+.+... ...|.+.. . ....++++..+++.|++.+ + +.++
T Consensus 331 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~~----~-d~i~ 405 (616)
T PRK07418 331 NRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLA----P-DAYY 405 (616)
T ss_pred ccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhC----C-CcEE
Confidence 111211110 11111111 0 1123455555666665544 6 5888
Q ss_pred EeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCccccc
Q 013746 358 VSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 358 v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~ 436 (437)
+.| |.+..|..++ +. .+|++++.++++|+|||++|+||||+++.|+|+||+|+|||||+|++|||+|++||++|++.
T Consensus 406 ~~D~G~~~~~~~~~-~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpvi~ 483 (616)
T PRK07418 406 TTDVGQHQMWAAQF-LR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGINVKT 483 (616)
T ss_pred EECChHHHHHHHHh-hh-cCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEE
Confidence 777 6667777665 45 57889999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 013746 437 I 437 (437)
Q Consensus 437 i 437 (437)
|
T Consensus 484 v 484 (616)
T PRK07418 484 V 484 (616)
T ss_pred E
Confidence 5
No 21
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=9.3e-85 Score=683.32 Aligned_cols=417 Identities=25% Similarity=0.418 Sum_probs=348.5
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
+.++++++++|++.|+++||+||||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 12 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~ 91 (571)
T PRK07710 12 EEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGAT 91 (571)
T ss_pred ccccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 34467999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++|++.|.++|||||||+
T Consensus 92 N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 171 (571)
T PRK07710 92 NVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLID 171 (571)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.......+. ....+...+++..+++++++|++|+||+|++|.|++++++.+++++|+|++|+||
T Consensus 172 iP~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv 246 (571)
T PRK07710 172 IPKDMVVEEGEFCYDVQMDL-----PGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPV 246 (571)
T ss_pred cChhHhhccccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCE
Confidence 99999987764211000000 0111222356778999999999999999999999988889999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccHH-------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 250 LPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
+||++|||.||++||+++|.. .++++++|||||+||+++++..+ ++...|.++.++||||
T Consensus 247 ~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~ig~~~~~ 325 (571)
T PRK07710 247 VHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVT-GNLAYFAKEATVAHIDIDPAEIGKNVPT 325 (571)
T ss_pred EEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCcccc-CchhhcCCCCeEEEEECCHHHhcCcCCC
Confidence 999999999999999999853 56788999999999999987543 3333456667889887
Q ss_pred -------------hHHhhhhh--hHHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcc-h
Q 013746 311 -------------AIWKKTKD--NVLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA-N 363 (437)
Q Consensus 311 -------------~l~~~~~~--~~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~-~ 363 (437)
+|.+.+.. ....|.... . ....++++..+++.|++.+ +++++++.|++ +
T Consensus 326 ~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~d~g~~ 401 (571)
T PRK07710 326 EIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLSYKRNSESIKPQKAIEMLYEIT----KGEAIVTTDVGQH 401 (571)
T ss_pred CeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhChhhhcCCCCCcCHHHHHHHHHhhC----CCCeEEEECCcHH
Confidence 11111111 001121110 0 1122444445555555544 88999988854 5
Q ss_pred HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 364 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..|..+ +++..+|++|+.++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++||++|++.|
T Consensus 402 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~iv 474 (571)
T PRK07710 402 QMWAAQ-YYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVV 474 (571)
T ss_pred HHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEE
Confidence 566655 5688899999999999999999999999999999999999999999999999999999999998764
No 22
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=1.7e-84 Score=679.68 Aligned_cols=408 Identities=28% Similarity=0.433 Sum_probs=347.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
|+++++|++.|+++||+||||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 68999999999999999999999999999999997788999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
||++||.+++|||+|+|++++...+++.+|++||.++++++|||++++++++++++.+++|++.|.++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
++.++++.... + ......+.+++..+++++++|++||||+|++|+|+.++++.+++++|||++|+||+||+
T Consensus 161 v~~~~~~~~~~---~------~~~~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 231 (547)
T PRK08322 161 IAAEETDGKPL---P------RSYSRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQ 231 (547)
T ss_pred hhhCccccccc---c------ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcc
Confidence 98876542211 0 01122334567889999999999999999999999988999999999999999999999
Q ss_pred CCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------------
Q 013746 254 MGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------------- 310 (437)
Q Consensus 254 ~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------------- 310 (437)
+|||.||++||+++|. ..+.++++|||||+||+++.++.+..+. +.++.++||||
T Consensus 232 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i 309 (547)
T PRK08322 232 MGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN--PNGDKKVIHINFLPAEVDPVYFPQVEV 309 (547)
T ss_pred ccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC--CCCCCeEEEEeCCHHHcCCCcCCCeEE
Confidence 9999999999999985 2467899999999999999876543321 23456899987
Q ss_pred ---------hHHhhhhhh-------HHHHHHHH----hc----cCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHH
Q 013746 311 ---------AIWKKTKDN-------VLKMEVQL----AK----DVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTM 365 (437)
Q Consensus 311 ---------~l~~~~~~~-------~~~~~~~~----~~----~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~ 365 (437)
+|.+.+.+. ...+.... .. ...++++..+++.|++.+ +++++++.| |.+..
T Consensus 310 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ii~~d~G~~~~ 385 (547)
T PRK08322 310 VGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVM----PDDDIVILDNGAYKI 385 (547)
T ss_pred ecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHC----CCCeEEEECCcHHHH
Confidence 121211110 00111100 00 112455556666666655 888988888 66666
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|..+ +++..+|++++.++++|+|||++|+|||+|+++|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 386 ~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ii 456 (547)
T PRK08322 386 WFAR-NYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVL 456 (547)
T ss_pred HHHH-hcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEE
Confidence 7665 4577889999999999999999999999999999999999999999999999999999999999875
No 23
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-84 Score=686.25 Aligned_cols=415 Identities=25% Similarity=0.412 Sum_probs=346.8
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
.+|+++|+|++.|+++||+||||+||+++.+|+++|.++ +|++|.||||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 108 (612)
T PRK07789 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN 108 (612)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357999999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.+....+++.+|++||..+++++|||++++++++++++.+++|++.|+++|+|||||+|
T Consensus 109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i 188 (612)
T PRK07789 109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDI 188 (612)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.......+. ....+...+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|+||+
T Consensus 189 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~ 263 (612)
T PRK07789 189 PKDALQAQTTFSWPPRMDL-----PGYRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVV 263 (612)
T ss_pred ccchhhcccccccCccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEE
Confidence 9999987764211000000 01111223567889999999999999999999999989999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
||++|||.||++||+++|. ..++++++|||||++|+++++..+ +....|.++.++||||
T Consensus 264 tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t-~~~~~~~~~~~~i~Id~d~~~i~~~~~~~ 342 (612)
T PRK07789 264 TTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVT-GKLDSFAPDAKVIHADIDPAEIGKNRHAD 342 (612)
T ss_pred EcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCcccc-CChhhcCCCCcEEEEECCHHHhCCCCCCC
Confidence 9999999999999999984 245788999999999999987544 3333355667899987
Q ss_pred ------------hHHhhhhh--------hHHHHHHHH----h--------ccCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 ------------AIWKKTKD--------NVLKMEVQL----A--------KDVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 ------------~l~~~~~~--------~~~~~~~~~----~--------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
+|.+.+.+ ....|.+.. . ....++++..+++.|++.+ +++++++
T Consensus 343 ~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv 418 (612)
T PRK07789 343 VPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIA----GPDAIYV 418 (612)
T ss_pred eEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhC----CCCeEEE
Confidence 12221211 011121111 0 0112344445555555544 8899999
Q ss_pred eCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 359 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 359 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|++ +..|.. .+++...|++|+.++++|+|||++|+|||+++++|+|+|++++|||||+|++|||+|++||++|+++|
T Consensus 419 ~d~G~~~~~~~-~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~iv 497 (612)
T PRK07789 419 AGVGQHQMWAA-QFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVA 497 (612)
T ss_pred ECCcHHHHHHH-HhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCeEEE
Confidence 8855 445554 46688889999999999999999999999999999999999999999999999999999999998765
No 24
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.9e-84 Score=681.91 Aligned_cols=415 Identities=26% Similarity=0.400 Sum_probs=344.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+||||||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 589999999999999999999999999999999963 3699999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
|+++||++||.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|.++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.......+.. ....+....+++..+++++++|++|+||+|++|.|++++++.+++++|+|++|+||
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv 238 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPLV---KGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPI 238 (572)
T ss_pred cChhHhhcccccccccccccc---cCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCE
Confidence 999999887653110000000 00011122356788999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCC-CCceEEEhH-----------
Q 013746 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVD----------- 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~~i~vd----------- 310 (437)
+||++|||.||++||+++|. ..+..+++|||||++|++++++.+.+ +..+. ++.++||||
T Consensus 239 ~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~ 317 (572)
T PRK06456 239 VSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTS-YDEMVETRKKFIMVNIDPTDGEKAIK 317 (572)
T ss_pred EEcCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhccc-cccccCCCCeEEEEeCChHHhCCccC
Confidence 99999999999999999985 34567889999999999998765433 22233 356888887
Q ss_pred --------------hHHhhhhh-----hHHHHHHHH-------h-----ccCCCCCcccHHHHHHHHHhccCCCCCEEEe
Q 013746 311 --------------AIWKKTKD-----NVLKMEVQL-------A-----KDVVPFNFMTPMRIIRDAILGVGSPAPILVS 359 (437)
Q Consensus 311 --------------~l~~~~~~-----~~~~~~~~~-------~-----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~ 359 (437)
.|.+.+.+ ....|.... . ....++++..+++.|++.+ +++++++.
T Consensus 318 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~ii~~ 393 (572)
T PRK06456 318 VDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQAL----PRDAIVTT 393 (572)
T ss_pred CCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhC----CCCEEEEE
Confidence 11111111 001121110 0 0112455556666666655 88898888
Q ss_pred C-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 360 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 360 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
| |.+..|..+ +++...|.+++.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 394 d~g~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~iv 471 (572)
T PRK06456 394 GVGQHQMWAEV-FWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISV 471 (572)
T ss_pred CCcHHHHHHHH-hcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEEE
Confidence 8 445555544 5677888999999999999999999999999999999999999999999999999999999999764
No 25
>PLN02470 acetolactate synthase
Probab=100.00 E-value=2.3e-84 Score=681.78 Aligned_cols=416 Identities=24% Similarity=0.393 Sum_probs=343.9
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
..+|+++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||+|||++|+|||++
T Consensus 10 ~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T PLN02470 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGAT 89 (585)
T ss_pred CccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 3458999999999999999999999999999999999654 799999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
|+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|.++|+|||||+
T Consensus 90 N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~ 169 (585)
T PLN02470 90 NLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVD 169 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.......+.. .........+++..+++++++|++|+||+|++|.|+. ++.+++++|+|++++||
T Consensus 170 iP~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~~~pv 244 (585)
T PLN02470 170 IPKDIQQQLAVPNWNQPMKLP---GYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELTGIPV 244 (585)
T ss_pred ecCchhhhhcccccccccccc---ccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHhCCCE
Confidence 999999877532100000000 0001112235677899999999999999999999986 56789999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
+||++|||.||++||+++|. ..++++++||+||+||+++++..+ +.+..|.+..++||||
T Consensus 245 ~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~-~~~~~~~~~~~~I~id~d~~~i~~~~~~ 323 (585)
T PLN02470 245 ASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKNKQP 323 (585)
T ss_pred EEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCccccc-CChhhcCCCCeEEEEECCHHHhCCCcCC
Confidence 99999999999999999984 345788999999999999987654 3333355567899987
Q ss_pred -------------hHHhhhhhh------HHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC
Q 013746 311 -------------AIWKKTKDN------VLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 360 (437)
Q Consensus 311 -------------~l~~~~~~~------~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~ 360 (437)
.|.+.+... ...|.+.. . ....++++..+++.|++.+ ++|.+++.|
T Consensus 324 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~----~~d~iv~~d 399 (585)
T PLN02470 324 HVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLSYPTFGDAIPPQYAIQVLDELT----DGNAIISTG 399 (585)
T ss_pred CeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhcccCCCCCcCHHHHHHHHHhhC----CCCEEEEEC
Confidence 121211110 01111110 0 0112455555566665554 888888888
Q ss_pred -cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.+..|..+ +++..+|.+|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 400 ~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~iv 476 (585)
T PLN02470 400 VGQHQMWAAQ-WYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIM 476 (585)
T ss_pred CcHHHHHHHH-hcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 455556655 5688889999999999999999999999999999999999999999999999999999999998764
No 26
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2e-84 Score=679.12 Aligned_cols=411 Identities=26% Similarity=0.402 Sum_probs=344.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.+|+++++|++.|+++||+||||+||+++.+|++++.+++|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~ 82 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNL 82 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHh
Confidence 45899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++|+++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|.++|||||||+||
T Consensus 83 l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 83 ATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++.+..... .......++++.+++++++|++||||+|++|.|++++++.+++++|||++|+||+|
T Consensus 163 ~dv~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~t 234 (552)
T PRK08617 163 QDVVDAPVTSKAIAPL--------SKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVE 234 (552)
T ss_pred hhhhhccccccccccc--------cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEe
Confidence 9999888753211000 11112234677899999999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCCCC-CcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 252 TPMGKGLLPDTHP-LAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp-~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
|++|||.||++|| +++|. ..++++++|||||+||+++.++....+. +.++.++||||
T Consensus 235 t~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~ 312 (552)
T PRK08617 235 TFQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWN--SEGDATIIHIDVLPAEIDNYYQPE 312 (552)
T ss_pred ccccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCccccccccccc--cCCCCcEEEEeCChHHhCCccCCC
Confidence 9999999999998 58884 3456789999999999998654432221 12346889887
Q ss_pred ------------hHHhhhhh-----hHHHHH----HHH----h----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-
Q 013746 311 ------------AIWKKTKD-----NVLKME----VQL----A----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE- 360 (437)
Q Consensus 311 ------------~l~~~~~~-----~~~~~~----~~~----~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~- 360 (437)
+|.+.+.. ....|. ... . ....++++..+++.|++.+ +++.+++.|
T Consensus 313 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~ii~~d~ 388 (552)
T PRK08617 313 RELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIV----TDDTTVTVDV 388 (552)
T ss_pred eEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhc----CCCcEEEeCC
Confidence 11111111 011111 100 0 1122355555566665555 889988888
Q ss_pred cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.+..|..++ ++..+|++++.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++|||+|++.|
T Consensus 389 G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~v 464 (552)
T PRK08617 389 GSHYIWMARY-FRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHI 464 (552)
T ss_pred cHHHHHHHHh-ccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEE
Confidence 5666676654 577889999988899999999999999999999999999999999999999999999999999754
No 27
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=4.5e-84 Score=674.57 Aligned_cols=407 Identities=24% Similarity=0.398 Sum_probs=341.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGL 95 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi 95 (437)
++++|++.|+++||+||||+||+++.+|++++.+.+|++|.+|||++|+||||||+|+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 47999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 96 SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 96 ~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|.++|||||||+||.|++
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
.++++...... ........+++..+++++++|++||||+|++|.|++++++.+++++|||++|+||++|++|
T Consensus 161 ~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~g 232 (539)
T TIGR02418 161 DSPVSVKAIPA--------SYAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232 (539)
T ss_pred hCcccccccCc--------ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEcccc
Confidence 88875321110 0111122345668999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-----------------
Q 013746 256 KGLLPDTH-PLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----------------- 310 (437)
Q Consensus 256 kg~~~~~h-p~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----------------- 310 (437)
||.||++| |+|+|. ..++++++||+||++|+++.++.+..+. +.++.++||||
T Consensus 233 kg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~ 310 (539)
T TIGR02418 233 AGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWN--SENDATIVHIDVEPAQIDNNYQPDLELV 310 (539)
T ss_pred CcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccC--cCCCCeEEEEeCChHHcCCccCCCeEEe
Confidence 99999997 788874 3457889999999999998765433221 22346889887
Q ss_pred --------hHHhhhhhh-----HHHHH----H---HHh-----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchH
Q 013746 311 --------AIWKKTKDN-----VLKME----V---QLA-----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANT 364 (437)
Q Consensus 311 --------~l~~~~~~~-----~~~~~----~---~~~-----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~ 364 (437)
+|.+.+... ...|. . ... ....++++.++++.|++.+ +++++++.| |.+.
T Consensus 311 ~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~ii~~d~G~~~ 386 (539)
T TIGR02418 311 GDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIV----TDDVTVTVDMGSHY 386 (539)
T ss_pred cCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhC----CCCCEEEECCcHHH
Confidence 111111110 00111 0 000 0112455555666666555 889988888 5566
Q ss_pred HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 365 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|..+ +++...|++++.+.++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 387 ~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~iv 458 (539)
T TIGR02418 387 IWMAR-YFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHI 458 (539)
T ss_pred HHHHH-hcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEE
Confidence 66665 4578889999999999999999999999999999999999999999999999999999999999865
No 28
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=5e-84 Score=679.51 Aligned_cols=412 Identities=25% Similarity=0.404 Sum_probs=348.3
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
+++|+++++|++.|+++||+||||+||+++.+|++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 82 (588)
T PRK07525 3 KMKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITN 82 (588)
T ss_pred cccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34589999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|+++ +|||||+|
T Consensus 83 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~i 161 (588)
T PRK07525 83 FVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINI 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 59999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.... .+ .....+.+++..+++++++|.+|+||+|++|.|++++++.+++++|||++|+||+
T Consensus 162 P~Dv~~~~~~~~~~--~~-------~~~~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~ 232 (588)
T PRK07525 162 PRDYFYGVIDVEIP--QP-------VRLERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVA 232 (588)
T ss_pred ChhHhhhhcccccC--cc-------ccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeE
Confidence 99999888753210 00 1112334577889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccC--CCCCCCCCceEEEhH-----------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVD----------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~--~~~~~~~~~~~i~vd----------- 310 (437)
||++|||.||++||+++|. ..++++++||+||+||+++++..++. ....|.++.++||||
T Consensus 233 tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~ 312 (588)
T PRK07525 233 CGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKK 312 (588)
T ss_pred EcccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCC
Confidence 9999999999999999984 34567899999999999998754421 112355677899998
Q ss_pred --------------hHHhhhhhh-----------------HHHHHHHHh-----c--------------cCCCCCcccHH
Q 013746 311 --------------AIWKKTKDN-----------------VLKMEVQLA-----K--------------DVVPFNFMTPM 340 (437)
Q Consensus 311 --------------~l~~~~~~~-----------------~~~~~~~~~-----~--------------~~~~~~~~~~~ 340 (437)
+|.+.+.+. ...|..... . ...++++.+++
T Consensus 313 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 392 (588)
T PRK07525 313 VSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQAL 392 (588)
T ss_pred CCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHH
Confidence 122222110 011111110 0 01345555666
Q ss_pred HHHHHHHhccCCCCCEEEeCcc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccC
Q 013746 341 RIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGF 419 (437)
Q Consensus 341 ~~i~~~l~~~~~~~~i~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~ 419 (437)
+.|++.+ |+|+|++.|++ +..|. ..+++..+|++++.++++|+|||++|+|||+|++.|+|+||+++|||||+|
T Consensus 393 ~~l~~~l----~~d~ivv~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~ 467 (588)
T PRK07525 393 REIQKAL----PEDAIVSTDIGNNCSIA-NSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGI 467 (588)
T ss_pred HHHHHhC----CCCcEEEECCcccHHHH-HHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhc
Confidence 6666655 88999999955 45555 456688899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCcccccC
Q 013746 420 SAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 420 ~~~eL~Ta~r~~l~i~~i 437 (437)
++|||+|++||++|++.|
T Consensus 468 ~~~el~Ta~~~~lpv~iv 485 (588)
T PRK07525 468 SMNEVMTAVRHNWPVTAV 485 (588)
T ss_pred cHHHHHHHHHhCCCeEEE
Confidence 999999999999998764
No 29
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=5e-84 Score=678.66 Aligned_cols=417 Identities=25% Similarity=0.381 Sum_probs=344.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh---C-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---L-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~---~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
+.++++++|++.|+++||+||||+||+++++|+++|.+ . +|++|.+|||++|+||||||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T CHL00099 8 REKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPG 87 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 34899999999999999999999999999999999964 2 4999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeE
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~ 167 (437)
++|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||+.++.+++++++.+++||+.|.++||||||
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~ 167 (585)
T CHL00099 88 ATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVL 167 (585)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCC
Q 013746 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (437)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~ 247 (437)
|+||.|++.++++...........+ .........++++.+++++++|++||||+|++|.|++++++.+++++|+|++|+
T Consensus 168 l~iP~Dv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~ 246 (585)
T CHL00099 168 IDIPKDVGLEKFDYYPPEPGNTIIK-ILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKI 246 (585)
T ss_pred EecChhhhhhhcccccccccccccc-cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHHHHCC
Confidence 9999999987765311100000000 001111234577889999999999999999999999999999999999999999
Q ss_pred CeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------
Q 013746 248 PFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------- 310 (437)
Q Consensus 248 pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------- 310 (437)
||+||++|||+||++||+|+|. ..+.++++|||||++|+++++..+.+ +..|.++.++||||
T Consensus 247 PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~ 325 (585)
T CHL00099 247 PVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGK-LDEFACNAQVIHIDIDPAEIGKNR 325 (585)
T ss_pred CEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCC-HhHcCCCCeEEEEECCHHHhCCCC
Confidence 9999999999999999999984 24567899999999999998765432 23355667899987
Q ss_pred ---------------hHHhhhhhh--------HHHHHHHH----h-------ccCCCCCcccHHHHHHHHHhccCCCCCE
Q 013746 311 ---------------AIWKKTKDN--------VLKMEVQL----A-------KDVVPFNFMTPMRIIRDAILGVGSPAPI 356 (437)
Q Consensus 311 ---------------~l~~~~~~~--------~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~i 356 (437)
+|.+.+.+. ...|.+.. . ....++++.++++.|++.+ + |++
T Consensus 326 ~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~----~-d~i 400 (585)
T CHL00099 326 IPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLA----P-DAY 400 (585)
T ss_pred CCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhC----C-CeE
Confidence 111211110 01111111 0 0123466666666666544 7 888
Q ss_pred EEeCcch-HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccc
Q 013746 357 LVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 357 ~v~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~ 435 (437)
++.|+++ ..|..+ +++. +|++++.++++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|++
T Consensus 401 v~~d~G~~~~~~~~-~~~~-~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~~ 478 (585)
T CHL00099 401 FTTDVGQHQMWAAQ-FLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIK 478 (585)
T ss_pred EEECCcHHHHHHHH-hccC-CCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCCCeE
Confidence 8888554 556555 4554 578999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 013746 436 SI 437 (437)
Q Consensus 436 ~i 437 (437)
.|
T Consensus 479 ~v 480 (585)
T CHL00099 479 II 480 (585)
T ss_pred EE
Confidence 54
No 30
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=1.2e-83 Score=668.06 Aligned_cols=409 Identities=19% Similarity=0.205 Sum_probs=338.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
|+++|+|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|+||||||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 689999999999999999999999999999999976 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++||+.|+++|||||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
|++.++++.+.. .. .....+.+++..+++++++|++||||+|++|.|++++++.+++++|||++|+||+|+
T Consensus 161 Dv~~~~~~~~~~-~~--------~~~~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~ 231 (514)
T PRK07586 161 DVAWSEGGPPAP-PP--------PAPAPAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAE 231 (514)
T ss_pred chhccccccccc-cC--------CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEec
Confidence 999877653211 00 112234567889999999999999999999999999999999999999999999986
Q ss_pred C------CCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCc--cccCCCC-CCCCCceEEEhH-----------hH
Q 013746 253 P------MGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWL--LHFGEPP-KWSKDVKFVLVD-----------AI 312 (437)
Q Consensus 253 ~------~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~--~~~~~~~-~~~~~~~~i~vd-----------~l 312 (437)
. +|||.+|++|+.+.+...+.++++|||||+||+++... ...+... .+..+.++++++ +|
T Consensus 232 ~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~L 311 (514)
T PRK07586 232 TFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAGPGEDAAAALEAL 311 (514)
T ss_pred ccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECCCcccHHHHHHHH
Confidence 4 59999999998888877778899999999999996421 1111111 122344566654 12
Q ss_pred HhhhhhhH--HHHHHHH--hccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCC
Q 013746 313 WKKTKDNV--LKMEVQL--AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWG 387 (437)
Q Consensus 313 ~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (437)
.+.+.... ....... .....++++.++++.|++.+ |++++++.| |.+..|.. .+++...|++++.+++ |
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~ivv~d~g~~~~~~~-~~~~~~~~~~~~~~~~-g 385 (514)
T PRK07586 312 ADALGAKPAAPPLAAPARPPLPTGALTPEAIAQVIAALL----PENAIVVDESITSGRGFF-PATAGAAPHDWLTLTG-G 385 (514)
T ss_pred HHhhcccccchhhhhccccCCCCCCcCHHHHHHHHHHhC----CCCeEEEeCCCcCHHHHH-HhccccCCCCEEccCC-c
Confidence 12111100 0000000 01123455556666666655 889999888 55555654 4567788889987766 9
Q ss_pred CCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 388 TMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 388 ~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|||++|+|||+++|+|+|+||+++|||||+|++|||+|++|||+|++.|
T Consensus 386 ~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~iv 435 (514)
T PRK07586 386 AIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTV 435 (514)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEE
Confidence 99999999999999999999999999999999999999999999998754
No 31
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-83 Score=666.29 Aligned_cols=410 Identities=20% Similarity=0.243 Sum_probs=335.9
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
.+|+++++|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|+||||||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 46899999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.|++|||+|+|+.++...+++.+|+.|+..+++++|||++++++++++++.++||++.|.++|||||||+|
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.+.. .. .....+.++++.+++++++|++||||+|++|+|+.++++.+++++|+|++|+||+
T Consensus 163 P~Dv~~~~~~~~~~-~~--------~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~ 233 (518)
T PRK12474 163 PADVAWNEAAYAAQ-PL--------RGIGPAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLY 233 (518)
T ss_pred chhhhcccccCCcC-CC--------CCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEE
Confidence 99999877642110 00 0011234677889999999999999999999999999999999999999999999
Q ss_pred eC------CCCCCCCCC-CCCCcccHHHHhchhcCCEEEEEcCcCCCc--cccC-CCCCCCCCceEEEhHh---------
Q 013746 251 PT------PMGKGLLPD-THPLAATAARSLAIGQCDVALVVGARLNWL--LHFG-EPPKWSKDVKFVLVDA--------- 311 (437)
Q Consensus 251 tt------~~gkg~~~~-~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~--~~~~-~~~~~~~~~~~i~vd~--------- 311 (437)
+| ++|||.+|+ +||++.+ ....++++|||||+||+++++. ...+ ....+.++.++++++.
T Consensus 234 ~t~~~~~~~~gkg~~~~~~~~~~~~-~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~l 312 (518)
T PRK12474 234 CDTFAPRIERGAGRVPIERIPYFHE-QITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQPDEDLAQAL 312 (518)
T ss_pred EecCcccccCCCCCCCCcccccchH-HHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCCCcCHHHHH
Confidence 75 469999995 6687744 4456899999999999996431 1111 1112334567888761
Q ss_pred --HHhhhhhhHHHHHH---HH-hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCc-chHHHHHHHhhhhcCCCeeecCC
Q 013746 312 --IWKKTKDNVLKMEV---QL-AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAG 384 (437)
Q Consensus 312 --l~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g-~~~~~~~~~~~~~~~~~~~~~~~ 384 (437)
|.+.+......... .. .....++++.++++.|++.+ ++|+|++.|+ .+..|. ..+++..+|++++.+.
T Consensus 313 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~iv~~d~g~~~~~~-~~~~~~~~p~~~~~~~ 387 (518)
T PRK12474 313 QDLADAVDAPAEPAARTPLALPALPKGALNSLGVAQLIAHRT----PDQAIYADEALTSGLFF-DMSYDRARPHTHLPLT 387 (518)
T ss_pred HHHHHhccccccccccccccccCCCCCCcCHHHHHHHHHHHC----CCCeEEEECCCcCHHHH-HHhhcccCCCCEEccC
Confidence 11111110000000 00 01223455555666666655 8899999884 555555 4556878888888775
Q ss_pred CCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+ |+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|++.|
T Consensus 388 ~-gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~ii 439 (518)
T PRK12474 388 G-GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVV 439 (518)
T ss_pred C-CccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcEEE
Confidence 4 999999999999999999999999999999999999999999999999864
No 32
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=3.1e-83 Score=673.25 Aligned_cols=416 Identities=25% Similarity=0.402 Sum_probs=347.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
|+++++|++.|+++||+||||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|.++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
++.++++.+.. ..+.... .....+...+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|+||+||+
T Consensus 161 v~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 238 (586)
T PRK06276 161 VQEGELDLEKY-PIPAKID-LPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL 238 (586)
T ss_pred HHhhhhccccc-ccccccc-ccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 99887653210 0000000 000011123457789999999999999999999999989999999999999999999999
Q ss_pred CCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------------
Q 013746 254 MGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------------- 310 (437)
Q Consensus 254 ~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------------- 310 (437)
+|||.||++||+++|. ..++++++|||||+||+++++..+. .+..+.++.++||||
T Consensus 239 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 317 (586)
T PRK06276 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTG-DISSFAPNAKIIHIDIDPAEIGKNVRVDVPI 317 (586)
T ss_pred CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccC-CccccCCCCeEEEEECCHHHhCCcCCCceEE
Confidence 9999999999999985 3457899999999999999876543 333355667899887
Q ss_pred ---------hHHhhhhh----hHHHHHHHH----h---c----cCCCCCcccHHHHHHHHHhccCCC-----CCEEEeCc
Q 013746 311 ---------AIWKKTKD----NVLKMEVQL----A---K----DVVPFNFMTPMRIIRDAILGVGSP-----APILVSEG 361 (437)
Q Consensus 311 ---------~l~~~~~~----~~~~~~~~~----~---~----~~~~~~~~~~~~~i~~~l~~~~~~-----~~i~v~~g 361 (437)
+|.+.+.. ....|.... . . ...++++..+++.|.+.| ++ +++++.|+
T Consensus 318 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~~~~~~iv~~d~ 393 (586)
T PRK06276 318 VGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVL----REIDPSKNTIITTDV 393 (586)
T ss_pred ecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhc----cccCCCCCeEEEeCC
Confidence 11111111 011121111 0 0 123455556666666665 77 88998885
Q ss_pred -chHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 362 -ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.+..|..+ +++..+|.+++.++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++||++|+++|
T Consensus 394 G~~~~~~~~-~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~v 469 (586)
T PRK06276 394 GQNQMWMAH-FFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVIC 469 (586)
T ss_pred cHHHHHHHH-hcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 45555554 5688889999999999999999999999999999999999999999999999999999999998764
No 33
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=4.5e-83 Score=669.16 Aligned_cols=412 Identities=26% Similarity=0.362 Sum_probs=343.7
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 013746 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~ 88 (437)
.++.++++++|++.|+++||+||||+||+++.+|++++.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus 4 ~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 83 (557)
T PRK08199 4 TPRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGA 83 (557)
T ss_pred ccccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccH
Confidence 45678999999999999999999999999999999999765 59999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 89 ~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
+|+++||++||.+++|||+|+|+++....+++.+|++||..+++++|||++++++++++++.++||++.|.++|||||||
T Consensus 84 ~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l 163 (557)
T PRK08199 84 TNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVL 163 (557)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
+||.|++.++++.+.. + ........++++.+++++++|.+||||+|++|.|+.++++.+++++|+|++|+|
T Consensus 164 ~iP~dl~~~~~~~~~~---~------~~~~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~p 234 (557)
T PRK08199 164 ALPEDVLSETAEVPDA---P------PYRRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLP 234 (557)
T ss_pred EcCHhHhhCccccccc---C------CcCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCC
Confidence 9999999877643211 0 011223346778899999999999999999999999889999999999999999
Q ss_pred eeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCC---CCceEEEhH--------
Q 013746 249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS---KDVKFVLVD-------- 310 (437)
Q Consensus 249 v~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~---~~~~~i~vd-------- 310 (437)
|++|++|||++|++||+|+|. ..++.+++|||||++|+++++..+.++ ..+. +..++||||
T Consensus 235 V~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~~~~~i~vd~d~~~~~~ 313 (557)
T PRK08199 235 VACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQGY-TLLDIPVPRQTLVHVHPDAEELGR 313 (557)
T ss_pred EEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCcccccccc-ccccccCCCCeEEEEeCCHHHhCC
Confidence 999999999999999999883 345678999999999999987654322 1122 456899987
Q ss_pred -----------------hHHhhhhhhHHHHHHH-------Hh------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC
Q 013746 311 -----------------AIWKKTKDNVLKMEVQ-------LA------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 360 (437)
Q Consensus 311 -----------------~l~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~ 360 (437)
+|.+........|... .. ....++++..+++.|++.+ +++++++.|
T Consensus 314 ~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ii~~d 389 (557)
T PRK08199 314 VYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLAWSAPLPGPGAVQLGEVMAWLRERL----PADAIITNG 389 (557)
T ss_pred ccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhhccccCCCCCcCHHHHHHHHHHhC----CCCeEEEEC
Confidence 1111111000111110 00 0112355555555555554 899999988
Q ss_pred c-chHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 G-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 g-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+ .+..|..+ +++..++++++.+ ++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|++.|
T Consensus 390 ~g~~~~~~~~-~~~~~~~~~~~~~-~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~v 465 (557)
T PRK08199 390 AGNYATWLHR-FFRFRRYRTQLAP-TSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVI 465 (557)
T ss_pred ChHHHHHHHH-hcCcCCCCeEECC-CCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 4 45555544 5677788888765 46999999999999999999999999999999999999999999999999865
No 34
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.5e-83 Score=672.65 Aligned_cols=416 Identities=23% Similarity=0.346 Sum_probs=344.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 82 (574)
T PRK06882 3 KLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHH
Confidence 4799999999999999999999999999999999976 489999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||+.++++++++++.+++|++.|.++|+|||||+||
T Consensus 83 l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 83 ITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.+..+... ..+...+ .....+...+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|+||+|
T Consensus 163 ~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t 239 (574)
T PRK06882 163 KDMVNPANKFTY--EYPEEVS-LRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTS 239 (574)
T ss_pred HHHhhhhccccc--ccCcccc-cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence 999876543110 0000000 0000111224677899999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------
Q 013746 252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------- 310 (437)
|++|||+||++||+++|. ..++++++|||||+||++++++.+.+ +..+.+..++||||
T Consensus 240 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~I~id~d~~~~~~~~~~~~ 318 (574)
T PRK06882 240 SLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNN-LAKYCPNAKVIHIDIDPTSISKNVPAYI 318 (574)
T ss_pred cCccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCc-hhhcCCCCeEEEEECCHHHhcCccCCce
Confidence 999999999999999984 34568899999999999998765433 33355667899987
Q ss_pred -----------hHHhhhhh--------hHHHHHHHH------h-----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC
Q 013746 311 -----------AIWKKTKD--------NVLKMEVQL------A-----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 360 (437)
Q Consensus 311 -----------~l~~~~~~--------~~~~~~~~~------~-----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~ 360 (437)
+|.+.+.. ....|.+.. . ....++++..+++.|++.+ +++.+++.|
T Consensus 319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~ii~~d 394 (574)
T PRK06882 319 PIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLT----NGDAYVASD 394 (574)
T ss_pred EEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhhccCCCCcCHHHHHHHHHhhc----CCCeEEEec
Confidence 11111111 001111000 0 0112344445566665544 888888888
Q ss_pred cc-hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 GA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
++ +..|.. .+++..+|++|+.++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++||++|++.|
T Consensus 395 ~g~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~v 471 (574)
T PRK06882 395 VGQHQMFAA-LHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIV 471 (574)
T ss_pred CchhHHHHH-HhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 54 455554 45688889999999999999999999999999999999999999999999999999999999999764
No 35
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=4.3e-83 Score=669.79 Aligned_cols=413 Identities=27% Similarity=0.420 Sum_probs=345.6
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
|+++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 689999999999999999999999999999999974 6899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+||++||.+++|||+|+|++++...+++.+|++||..+++++|||++++++++++++.+++|++.|.++|+|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
|++.++++.+.....+. ....+...+++..+++++++|.+||||+|++|.|++++++.+++++|+|++|+||+||
T Consensus 161 dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt 235 (558)
T TIGR00118 161 DVTTAEIEYPYPEKVNL-----PGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTT 235 (558)
T ss_pred hhhhhhccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 99988765321100000 0001112345677999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH---------------
Q 013746 253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD--------------- 310 (437)
Q Consensus 253 ~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd--------------- 310 (437)
++|||.+|++||+|+|. ..++++++|||||+||+++++..+. .+..+.++.++||||
T Consensus 236 ~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 314 (558)
T TIGR00118 236 LMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTG-NLAKFAPNAKIIHIDIDPAEIGKNVRVDIP 314 (558)
T ss_pred cccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCcEEEEeCCHHHhCCcCCCCeE
Confidence 99999999999999984 3467889999999999999876543 223345567899987
Q ss_pred ----------hHHhhhhh----hHHHHHHHH-----------hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCc-chH
Q 013746 311 ----------AIWKKTKD----NVLKMEVQL-----------AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANT 364 (437)
Q Consensus 311 ----------~l~~~~~~----~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g-~~~ 364 (437)
+|.+.+.. ....|.... .....++++..+++.|++.+ |++++++.|+ .+.
T Consensus 315 i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~d~g~~~ 390 (558)
T TIGR00118 315 IVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYPLKMDYTEEGIKPQQVIEELSRVT----KDEAIVTTDVGQHQ 390 (558)
T ss_pred EecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhC----CCCeEEEeCCcHHH
Confidence 11111111 001111111 01123455545555555554 8899999995 455
Q ss_pred HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 365 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|.. .+++..+|++|+.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 391 ~~~~-~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~v 462 (558)
T TIGR00118 391 MWAA-QFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKIL 462 (558)
T ss_pred HHHH-HhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 5554 45688889999999999999999999999999999999999999999999999999999999998764
No 36
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=2.2e-83 Score=675.32 Aligned_cols=412 Identities=23% Similarity=0.281 Sum_probs=340.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh--CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
.++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+||||||+|+||+||||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 4899999999999999999999999999999999965 36999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCcc-ceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
+++||++||.|++|||+|+|++++...+++.+|++||.++|+++| ||++++++++++++.+++|++.|+++| |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999976 999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.+....... .+........+.++++.+++++++|++||||+|++|+|++ ++.+++.+|||++|+||
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae~~~~PV 237 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTV-HSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAERLGAGV 237 (597)
T ss_pred eCcchhhCcccCcccccccc-ccccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHHHhCCce
Confidence 99999987764321100000 0000011123346788899999999999999999999996 77899999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
+||++|||.||++||+|+|. .+++++++|||||+||+++++.. +. . ..++.++||||
T Consensus 238 ~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~-~~--~-~~~~~~~i~Id~d~~~~~~~~~~ 313 (597)
T PRK08273 238 AKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSE-FL--P-KEGQARGVQIDIDGRMLGLRYPM 313 (597)
T ss_pred eecccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHh-cC--C-CCCCCeEEEEeCCHHHcCCCCCC
Confidence 99999999999999999984 35678999999999999986421 11 1 12346899987
Q ss_pred -------------hHHhhhhhh-HHHHHH-----------HHh----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-
Q 013746 311 -------------AIWKKTKDN-VLKMEV-----------QLA----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE- 360 (437)
Q Consensus 311 -------------~l~~~~~~~-~~~~~~-----------~~~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~- 360 (437)
+|.+.+... ...|.+ ... ....++++..+++.|++.+ +++++++.|
T Consensus 314 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~~~ivv~d~ 389 (597)
T PRK08273 314 EVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRL----PDNAILTADS 389 (597)
T ss_pred CceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhC----CCCeEEEECC
Confidence 111211110 001100 000 1123566666666666655 888888888
Q ss_pred cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCC-HHHHHHHHHc-----Cccc
Q 013746 361 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS-AVEVEVWLSC-----IIMI 434 (437)
Q Consensus 361 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~-~~eL~Ta~r~-----~l~i 434 (437)
|.+..|..+ +++..++.+++.++++|+|||++|+||||++++|+|+||+|+|||||+|+ +|||+|++|| ++|+
T Consensus 390 G~~~~~~~~-~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpv 468 (597)
T PRK08273 390 GSCANWYAR-DLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRL 468 (597)
T ss_pred cHHHHHHHH-hCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCE
Confidence 555666655 56888888999999999999999999999999999999999999999999 6999999999 8998
Q ss_pred ccC
Q 013746 435 SSI 437 (437)
Q Consensus 435 ~~i 437 (437)
+.|
T Consensus 469 iiv 471 (597)
T PRK08273 469 IVL 471 (597)
T ss_pred EEE
Confidence 764
No 37
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-83 Score=665.00 Aligned_cols=409 Identities=25% Similarity=0.389 Sum_probs=335.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
.+++|+|++.|+++||+||||+||+++++|++++.+++|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~ 81 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIAT 81 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHH
Confidence 48999999999999999999999999999999998779999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCC--CCCC-cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRG--DFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~--~~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
||++||.+++|||+|+|+.++...+++ .+|+ +||.++++++|||++++++++++++.+++|++.|.++|+|||||+|
T Consensus 82 gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (535)
T PRK07524 82 AMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEI 161 (535)
T ss_pred HHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 999999999999999999998877764 6677 5999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++..... + ......+.+++..+++++++|++||||+|++|.|++ ++.+++.+|||++++||+
T Consensus 162 P~Dv~~~~~~~~~~~--~------~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~pV~ 231 (535)
T PRK07524 162 PLDVLAAPADHLLPA--P------PTRPARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLDAPVA 231 (535)
T ss_pred CHhHHhcccccccCc--c------cccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHCCCEE
Confidence 999999887642110 0 011223346788899999999999999999999996 678999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-----HHHhchhcCCEEEEEcCcCCCccccC-CCCCCCCCceEEEhH--------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-----ARSLAIGQCDVALVVGARLNWLLHFG-EPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-----~~~~~l~~aDlvl~iG~~~~~~~~~~-~~~~~~~~~~~i~vd-------------- 310 (437)
||++|||.||++||+++|. ..++++++|||||++|++++.+.+.. +...+.++.++||||
T Consensus 232 tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 311 (535)
T PRK07524 232 LTINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPAL 311 (535)
T ss_pred EcccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCc
Confidence 9999999999999999984 35678899999999999986543211 112345567899988
Q ss_pred -----------hHHhhhhhh--HHHHH-HHH-------h--ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchHHHH
Q 013746 311 -----------AIWKKTKDN--VLKME-VQL-------A--KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDV 367 (437)
Q Consensus 311 -----------~l~~~~~~~--~~~~~-~~~-------~--~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~~~ 367 (437)
+|.+.+... ...|. ... . .....+.+..+++.|++.+ + +++++.|+++..++
T Consensus 312 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~-~~~i~~d~g~~~~~ 386 (535)
T PRK07524 312 ALVGDARAALEALLARLPGQAAAADWGAARVAALRQALRAEWDPLTAAQVALLDTILAAL----P-DAIFVGDSTQPVYA 386 (535)
T ss_pred eEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHhchhhccccccCHHHHHHHHHHhC----C-CCEEEeCCcHHHHH
Confidence 111111110 00110 000 0 0111122233444454443 6 57777775444434
Q ss_pred HHHhhhhcCCCeeec-CCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 368 GRAVLVQTEPRCRLD-AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 368 ~~~~~~~~~~~~~~~-~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
...+++..+|.+++. ++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++|||+|++.|
T Consensus 387 ~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~v 457 (535)
T PRK07524 387 GNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVL 457 (535)
T ss_pred HHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEE
Confidence 444568888999998 8899999999999999999999999999999999999999999999999999864
No 38
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-82 Score=664.36 Aligned_cols=406 Identities=23% Similarity=0.389 Sum_probs=337.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh--CCcEEEEEcCChhhH
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT--GKPGILLTVSGPGCV 89 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t--g~~~v~~~t~GpG~~ 89 (437)
.+|+++++|++.|+++||++|||+|| .+|++++.+.+|++|.||||++|+||||||+|+| |+|+||++|+|||++
T Consensus 18 ~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~~ 94 (565)
T PRK06154 18 KTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGAE 94 (565)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccHH
Confidence 45899999999999999999999995 4899999878899999999999999999999999 499999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
|+++||++||.+++|||+|+|+.+....+.+ +.+|+.++|+++|||+.++.+++++++.+++||+.|.++|+|||||+
T Consensus 95 N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~ 172 (565)
T PRK06154 95 NAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLE 172 (565)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9999999999999999999999987765543 35788999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++....... ........+++..+++++++|.+||||+|++|.|++++++.+++++|||++|+||
T Consensus 173 iP~Dv~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV 245 (565)
T PRK06154 173 LPVDVLAEELDELPLDHR-------PSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPV 245 (565)
T ss_pred cchHHhhhhccccccccc-------CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCE
Confidence 999999887653110000 0112233567788999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
+||++|||.||++||+|+|. ..++++++||+||+||++++++. +++ .+.++.++||||
T Consensus 246 ~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~-~~~--~~~~~~~vI~id~d~~~~~~~~~~ 322 (565)
T PRK06154 246 MTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSY-YGL--PMPEGKTIIHSTLDDADLNKDYPI 322 (565)
T ss_pred EECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccc-cCc--cCCCCCeEEEEECCHHHhccccCC
Confidence 99999999999999999984 34578999999999999998643 332 255567899987
Q ss_pred -------------hHHhhhhhh-------HHHHHHH--------H-------hccCCCCCcccHHHHHHHHHhccCCC-C
Q 013746 311 -------------AIWKKTKDN-------VLKMEVQ--------L-------AKDVVPFNFMTPMRIIRDAILGVGSP-A 354 (437)
Q Consensus 311 -------------~l~~~~~~~-------~~~~~~~--------~-------~~~~~~~~~~~~~~~i~~~l~~~~~~-~ 354 (437)
+|.+.+.+. ...|... . .....++++.++++.|++.+ ++ |
T Consensus 323 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~~d 398 (565)
T PRK06154 323 DHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAV----DIKT 398 (565)
T ss_pred CeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhc----CCCC
Confidence 121211110 0011100 0 01223566666676666655 64 6
Q ss_pred CEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcc
Q 013746 355 PILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIM 433 (437)
Q Consensus 355 ~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~ 433 (437)
.|++.| |.+..|.. .+++..+|++++.++++|+|||++|+|||+|+++|+|+||+++|||||+|++|||+|++|||+|
T Consensus 399 ~iv~~D~G~~~~~~~-~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp 477 (565)
T PRK06154 399 VIITHDAGSPRDQLS-PFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIP 477 (565)
T ss_pred EEEEECCcccHHHHH-HhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhCCC
Confidence 777878 55555554 4568889999999989999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 013746 434 ISSI 437 (437)
Q Consensus 434 i~~i 437 (437)
++.|
T Consensus 478 i~~v 481 (565)
T PRK06154 478 ILTI 481 (565)
T ss_pred eEEE
Confidence 9865
No 39
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-82 Score=664.54 Aligned_cols=400 Identities=22% Similarity=0.366 Sum_probs=335.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
+|++++|++.|+++||+||||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 69999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
|+++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|+++ +|||||+||.|
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D 160 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD 160 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 59999999999
Q ss_pred hhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
++.++.+.+. .. ..+...+ .....+++++++|++||||+|++|.|++ ++.+++++|||++|+||+||+
T Consensus 161 v~~~~~~~~~--~~-------~~~~~~~-~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~PV~tt~ 228 (549)
T PRK06457 161 ILRKSSEYKG--SK-------NTEVGKV-KYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYTL 228 (549)
T ss_pred Hhhccccccc--cc-------ccCCCCC-CCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCCEEEcc
Confidence 9887654211 00 0001111 1235789999999999999999999996 567999999999999999999
Q ss_pred CCCCCCCCCCCCcccHH-------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----hH----------
Q 013746 254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----AI---------- 312 (437)
Q Consensus 254 ~gkg~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----~l---------- 312 (437)
+|||.||++||+++|.. +++++++||+||++|+++++... +.++.++|||| .+
T Consensus 229 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~------~~~~~~ii~id~d~~~~~~~~~~~~~i 302 (549)
T PRK06457 229 NGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVNF------LNKSAKVIQVDIDNSNIGKRLDVDLSY 302 (549)
T ss_pred cccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhhc------CCCCCcEEEEeCCHHHhCCCCCCCeEE
Confidence 99999999999999852 45788999999999999865321 23456889887 00
Q ss_pred -------Hhh-hhhh-----------HHHHHHHH----hccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHH
Q 013746 313 -------WKK-TKDN-----------VLKMEVQL----AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVG 368 (437)
Q Consensus 313 -------~~~-~~~~-----------~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~ 368 (437)
.+. .... ...|.... .....++++.++++.|++.+ |++++++.| |.+..|..
T Consensus 303 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~~ 378 (549)
T PRK06457 303 PIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQENSLDKPMKPQRVAYIVSQKC----KKDAVIVTDTGNVTMWTA 378 (549)
T ss_pred ecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHhhC----CCCeEEEECCcHHHHHHH
Confidence 010 0000 01111111 11234566666676666655 889988888 55666665
Q ss_pred HHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCC-CCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 369 RAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACP-ERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p-~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+ +++...|++++.++++|+|||++|+|||+|+++| +|+||+++|||||+|++|||+|++||+||++.|
T Consensus 379 ~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~iv 447 (549)
T PRK06457 379 R-HFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKII 447 (549)
T ss_pred H-hCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEE
Confidence 5 4577788999999999999999999999999999 999999999999999999999999999999764
No 40
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=1.3e-82 Score=666.90 Aligned_cols=405 Identities=26% Similarity=0.396 Sum_probs=338.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh--CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
.++++++|++.|+++||+||||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 5799999999999999999999999999999999964 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|.+++ |||||+|
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~i 161 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTI 161 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865 9999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++.......+ ......+.++++.+++++++|++|+||+|++|.|++ ++.+++++|+|++|+||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~PV~ 233 (576)
T PRK08611 162 PDDLPAQKIKDTTNKTVD------TFRPTVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAKIPII 233 (576)
T ss_pred Chhhhhcccccccccccc------cCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhCCCEE
Confidence 999998887532110000 011123446778899999999999999999999986 567899999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
||++|||.+|++||+++|. ..++++++|||||+||+++++.. + +.++.++||||
T Consensus 234 tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~---~---~~~~~~~i~id~d~~~i~~~~~~~ 307 (576)
T PRK08611 234 HTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD---Y---LPKKAKAIQIDTDPANIGKRYPVN 307 (576)
T ss_pred EccccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc---c---CCCCCcEEEEeCCHHHcCCccCCC
Confidence 9999999999999999984 34567899999999999986432 1 23346888887
Q ss_pred ------------hHHhhhhhh-HHHH-----------HHHHh----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-c
Q 013746 311 ------------AIWKKTKDN-VLKM-----------EVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-G 361 (437)
Q Consensus 311 ------------~l~~~~~~~-~~~~-----------~~~~~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g 361 (437)
.|.+.+... ...| ..... ....++++..+++.|++.+ |++++++.| |
T Consensus 308 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l----~~~~ivv~d~G 383 (576)
T PRK08611 308 VGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIA----DDDAVLSVDVG 383 (576)
T ss_pred eeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhc----CCCeEEEEcCh
Confidence 111111110 0001 00111 1123455555566665555 889999888 5
Q ss_pred chHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 362 ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.+..|..+ +++...|.+++.+.++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 384 ~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iiv 458 (576)
T PRK08611 384 TVTVWSAR-YLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVV 458 (576)
T ss_pred HHHHHHHh-cCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEE
Confidence 55566655 5677788899988889999999999999999999999999999999999999999999999998764
No 41
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=1.1e-82 Score=667.13 Aligned_cols=407 Identities=24% Similarity=0.358 Sum_probs=339.0
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC--CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL--GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
++++|++.|+++||+||||+||+++++|+++|.++ +|++|.+|||++|+||||||+|+|||||||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 47999999999999999999999999999999753 6999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|.+ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 569999999999
Q ss_pred hhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
++.++++.......+. ...+...+.++++.+++++++|++||||+|++|.|++ ++.+++.+|||++|+||+||+
T Consensus 160 v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV~tt~ 233 (575)
T TIGR02720 160 FGWQEIPDNDYYASSV----SYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPLISTG 233 (575)
T ss_pred hhhccccccccccccc----cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCEEEcc
Confidence 9987775321100000 0011223456788999999999999999999999997 577999999999999999999
Q ss_pred CCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------------
Q 013746 254 MGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------------- 310 (437)
Q Consensus 254 ~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------------- 310 (437)
+|||.||++||+++|. ..++++++|||||++|+++++... . ..+.+..++||||
T Consensus 234 ~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i 310 (575)
T TIGR02720 234 LAKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEV-S--KAFKNTKYFIQIDIDPAKLGKRHHTDIAV 310 (575)
T ss_pred cccccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcccc-c--cccCCCceEEEEeCCHHHhCCCCCCCeEE
Confidence 9999999999999984 245688999999999999865322 1 1233344558887
Q ss_pred ---------hHHhhhhhh-HHHH-----------HHHH----hccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchH
Q 013746 311 ---------AIWKKTKDN-VLKM-----------EVQL----AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANT 364 (437)
Q Consensus 311 ---------~l~~~~~~~-~~~~-----------~~~~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~ 364 (437)
+|.+.+... ...| +... .....++++..+++.|++.+ ++|++++.| |.+.
T Consensus 311 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ii~~D~g~~~ 386 (575)
T TIGR02720 311 LADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIA----EDDAIYSIDVGDIN 386 (575)
T ss_pred ecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhC----CCCcEEEeCCcHHH
Confidence 111111110 0001 1000 01123566666777776666 889999888 5566
Q ss_pred HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 365 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|..+ +++...|++++.++++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 387 ~~~~~-~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~V 458 (575)
T TIGR02720 387 INSNR-HLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINI 458 (575)
T ss_pred HHHHH-hCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEE
Confidence 66655 5688889999999999999999999999999999999999999999999999999999999999864
No 42
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-82 Score=665.69 Aligned_cols=404 Identities=20% Similarity=0.295 Sum_probs=339.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.||++++|++.|+++||+||||+||+++.+|++++.++ +|++|.+|||++|+||||||+|+||||+||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 48999999999999999999999999999999999765 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|.+ +||||||+||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP 160 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 5699999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++........ ........++++.+++++++|++||||+|++|+|++ ++.+++++|+|++|+||++
T Consensus 161 ~Dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~Pv~~ 232 (578)
T PRK06546 161 GDIADEPAPEGFAPSVI------SPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAPVGH 232 (578)
T ss_pred hhhhhcccccccccccc------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcceEE
Confidence 99998887632110000 011222346788999999999999999999999996 6789999999999999999
Q ss_pred CCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------------
Q 013746 252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------------- 310 (437)
Q Consensus 252 t~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------------- 310 (437)
|++|||.||++||+++|. ..++++++|||||+||+++++. .|.++.++||||
T Consensus 233 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~-------~~~~~~~~I~vd~d~~~~~~~~~~~~ 305 (578)
T PRK06546 233 SLRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD-------QFLPDVRTAQVDIDPEHLGRRTRVDL 305 (578)
T ss_pred CcccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh-------hcCCCCcEEEEeCCHHHhCCCCCCCe
Confidence 999999999999999984 3567889999999999998642 123446788887
Q ss_pred -----------hHHhhhhhh--HH---HH----HHHH------h----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC
Q 013746 311 -----------AIWKKTKDN--VL---KM----EVQL------A----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 360 (437)
Q Consensus 311 -----------~l~~~~~~~--~~---~~----~~~~------~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~ 360 (437)
+|.+.+.+. .. .+ .... . ....++++..+++.|++.+ +++++++.|
T Consensus 306 ~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv~d 381 (578)
T PRK06546 306 AVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELA----ADDAVFTVD 381 (578)
T ss_pred EEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhc----cCCcEEEEC
Confidence 111211110 00 00 0000 0 0112455555666666555 889999988
Q ss_pred -cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.+..|..+ ++...++++++.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|++.|
T Consensus 382 ~G~~~~~~~~-~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~v 458 (578)
T PRK06546 382 TGMCNVWAAR-YITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVV 458 (578)
T ss_pred CcHHHHHHHH-hcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEE
Confidence 555556655 4577788999999999999999999999999999999999999999999999999999999998865
No 43
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=3e-83 Score=670.21 Aligned_cols=421 Identities=19% Similarity=0.279 Sum_probs=338.3
Q ss_pred ccccCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcC
Q 013746 6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84 (437)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~ 84 (437)
-+.-+++.++++++|++.|+++||+||||+||+++++|+++|.+ .+|++|.+|||++|+||||||+|+|| +|||++|+
T Consensus 8 ~~~~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~ 86 (578)
T PLN02573 8 ATPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTF 86 (578)
T ss_pred CCccccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEec
Confidence 34455677899999999999999999999999999999999965 47999999999999999999999999 99999999
Q ss_pred ChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCC--------cchhhhccCccceeeecCCcCchHHHHHHHHH
Q 013746 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--------LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLE 156 (437)
Q Consensus 85 GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~--------~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~ 156 (437)
|||++|+++|+++||.|++|||+|+|+.++...+++.+|+ .++.++|+++|||+.++.+++++++.+++|++
T Consensus 87 GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~ 166 (578)
T PLN02573 87 TVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAIS 166 (578)
T ss_pred CccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988777766432 24468999999999999999999999999999
Q ss_pred HhhcCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHH
Q 013746 157 RAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236 (437)
Q Consensus 157 ~a~~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~ 236 (437)
.|+++| |||||+||.|++.++++.......+.. .........+++..+++++++|++||||+|++|.|++++++.+
T Consensus 167 ~A~~~~-gPV~l~iP~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~ 242 (578)
T PLN02573 167 TALKES-KPVYISVSCNLAAIPHPTFSREPVPFF---LTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACK 242 (578)
T ss_pred HHHhcC-CCEEEEeehhhhcCccccccCCCCCcc---cccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHH
Confidence 999986 899999999999877542100000000 0000111123467799999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHH--------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEE
Q 013746 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308 (437)
Q Consensus 237 ~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~ 308 (437)
++++|||++|+||+||++|||+||++||+|+|.. .++++++|||||++|+++++..+.++ ..+.++.++||
T Consensus 243 ~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~-~~~~~~~~~I~ 321 (578)
T PLN02573 243 AFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGY-SLLLKKEKAII 321 (578)
T ss_pred HHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccc-cccCCCCcEEE
Confidence 9999999999999999999999999999999853 45688999999999999987665443 22445678999
Q ss_pred hH----h------------------HHhhhhhhHHHHHHH--Hh---------ccCCCCCcccHHHHHHHHHhccCCCCC
Q 013746 309 VD----A------------------IWKKTKDNVLKMEVQ--LA---------KDVVPFNFMTPMRIIRDAILGVGSPAP 355 (437)
Q Consensus 309 vd----~------------------l~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (437)
|| . |.+.+......+..+ .. ....++++.++++.|++.+ ++|+
T Consensus 322 id~d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ 397 (578)
T PLN02573 322 VQPDRVTIGNGPAFGCVLMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKML----SGDT 397 (578)
T ss_pred EeCCEEEECCcceECCcCHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhc----CCCC
Confidence 87 1 111111000001000 00 0112345555566665555 8999
Q ss_pred EEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccc
Q 013746 356 ILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 356 i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~ 435 (437)
+++.|+++.+ +....+...++..++.++++|+|||++|+|||++++.|+|+||+|+|||||+|++|||+|++||++|++
T Consensus 398 iiv~D~G~~~-~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv 476 (578)
T PLN02573 398 AVIAETGDSW-FNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSI 476 (578)
T ss_pred EEEEecccch-hhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCE
Confidence 9999965543 333345666677888899999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 013746 436 SI 437 (437)
Q Consensus 436 ~i 437 (437)
.|
T Consensus 477 ~v 478 (578)
T PLN02573 477 IF 478 (578)
T ss_pred EE
Confidence 65
No 44
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-82 Score=665.30 Aligned_cols=406 Identities=22% Similarity=0.312 Sum_probs=338.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
|.++++++|++.|+++||+||||+||+++.+|++++.+ ++|++|.+|||++|+|||+||+|+||+|+||++|+|||.+|
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 80 (574)
T PRK09124 1 MKQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLH 80 (574)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHH
Confidence 35799999999999999999999999999999999975 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|.++ +|||||+|
T Consensus 81 ~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~i 159 (574)
T PRK09124 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVVL 159 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 59999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++++........ ........+++..+++++++|++||||+|++|+|+. ++.+++++|+|++|+||+
T Consensus 160 P~Dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~PV~ 231 (574)
T PRK09124 160 PGDVALKPAPERATPHWY------HAPQPVVTPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLKAPIV 231 (574)
T ss_pred ChhhhhCccccccccccc------cCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhCCceE
Confidence 999998887532100000 011122235677899999999999999999999983 678999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
||++|||.||++||+++|. ..+.++++|||||+||+++++.. .+.++.++||||
T Consensus 232 tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~ 305 (574)
T PRK09124 232 HALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYRQ------FYPTDAKIIQIDINPGSLGRRSPVD 305 (574)
T ss_pred EcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCccc------ccCCCCcEEEeeCCHHHhCCCCCCC
Confidence 9999999999999999985 24568899999999999986431 123446899987
Q ss_pred ------------hHHhhhhhh-----HHHHH-------HHHhc------cCCCCCcccHHHHHHHHHhccCCCCCEEEeC
Q 013746 311 ------------AIWKKTKDN-----VLKME-------VQLAK------DVVPFNFMTPMRIIRDAILGVGSPAPILVSE 360 (437)
Q Consensus 311 ------------~l~~~~~~~-----~~~~~-------~~~~~------~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~ 360 (437)
+|.+.+... ...+. ..... ...++++..+++.+++.+ +++++++.|
T Consensus 306 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~ivv~d 381 (574)
T PRK09124 306 LGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFA----ADDAIFTCD 381 (574)
T ss_pred eEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhc----CCCcEEEEc
Confidence 111111100 00000 00000 113455555555555555 889999998
Q ss_pred -cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.+..|..+ ++....+++++.++++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 382 ~g~~~~~~~~-~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 458 (574)
T PRK09124 382 VGTPTVWAAR-YLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIV 458 (574)
T ss_pred CCHHHHHHHH-hcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEE
Confidence 556666655 4677889999999999999999999999999999999999999999999999999999999999765
No 45
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.2e-81 Score=658.74 Aligned_cols=409 Identities=22% Similarity=0.285 Sum_probs=341.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC------CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL------GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~------~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.+++++|+|++.|+++||+||||+||+++++|++++.+. +|++|.||||++|+||||||+|+|||||||++|+|
T Consensus 5 ~~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~G 84 (569)
T PRK08327 5 TMYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVD 84 (569)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 457999999999999999999999999999999999642 39999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCC--------CCCCC-cchhhhccCccceeeecCCcCchHHHHHHHHH
Q 013746 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR--------GDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLE 156 (437)
Q Consensus 86 pG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--------~~~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~ 156 (437)
||++|+++||++||.|++|||+|+|+.+....++ +.+|+ +||..+++++|||++++++++++.+.+++|++
T Consensus 85 PG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~ 164 (569)
T PRK08327 85 VGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQ 164 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776543 35899 69999999999999999999999999999999
Q ss_pred HhhcCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHH
Q 013746 157 RAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236 (437)
Q Consensus 157 ~a~~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~ 236 (437)
.|.++|||||||+||.|++.++++...... +. ......+.+++..+++++++|++|+||+|++|+|++++++.+
T Consensus 165 ~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~ 238 (569)
T PRK08327 165 IAMSEPKGPVYLTLPREVLAEEVPEVKADA-GR-----QMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFA 238 (569)
T ss_pred HHhcCCCCCEEEECcHHHHhhhccccccCc-cc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHH
Confidence 999999999999999999988876421100 00 111223456788899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------
Q 013746 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------ 310 (437)
Q Consensus 237 ~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------ 310 (437)
++++|||++++||++|++|||.||++||+++|...++++++|||||+||+++++..+.. .+.++.++||||
T Consensus 239 ~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~~~~---~~~~~~~vi~Id~d~~~~ 315 (569)
T PRK08327 239 SLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIPKKI---RPDADARVIQIDVDPLKS 315 (569)
T ss_pred HHHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEeCCCCCCccccc---cCCCCCeEEEEeCChhhh
Confidence 99999999999999999999999999999999887888999999999999987654322 134556888887
Q ss_pred ----------------------hHHhhhhhh-----H------HHHHHHH------h-------ccCCCCCcccHHHHHH
Q 013746 311 ----------------------AIWKKTKDN-----V------LKMEVQL------A-------KDVVPFNFMTPMRIIR 344 (437)
Q Consensus 311 ----------------------~l~~~~~~~-----~------~~~~~~~------~-------~~~~~~~~~~~~~~i~ 344 (437)
+|.+.+... . ..|.... . ....++++..+++.|+
T Consensus 316 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 395 (569)
T PRK08327 316 RIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLG 395 (569)
T ss_pred cccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHHHHHHH
Confidence 111111110 0 0111100 0 1123456656666666
Q ss_pred HHHhccCCCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHH-
Q 013746 345 DAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE- 423 (437)
Q Consensus 345 ~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~e- 423 (437)
+.+ +++++++.+. .|.. .+++..+|.+++.++++|+|||++|+|||+++++|+|+||+++|||||+|+++|
T Consensus 396 ~~l----~~~~~vv~~~---~~~~-~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~ 467 (569)
T PRK08327 396 EVA----DEYDAIVTEY---PFVP-RQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEA 467 (569)
T ss_pred Hhc----CccceEEecc---HHHH-HhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHH
Confidence 655 8888887652 2443 456888899999999999999999999999999999999999999999999976
Q ss_pred -HHHHHHcCcccccC
Q 013746 424 -VEVWLSCIIMISSI 437 (437)
Q Consensus 424 -L~Ta~r~~l~i~~i 437 (437)
|+|++||++|++.|
T Consensus 468 ~l~ta~~~~l~~~iv 482 (569)
T PRK08327 468 AHWVAERYGLPVLVV 482 (569)
T ss_pred HHHHHHHhCCCEEEE
Confidence 99999999999865
No 46
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-81 Score=651.21 Aligned_cols=409 Identities=28% Similarity=0.426 Sum_probs=336.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC--CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL--GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
+||++++|++.|+++||++|||+||+++.+|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 47999999999999999999999999999999999753 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCC--CCC-cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeE
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~ 167 (437)
+++|+++||.+++|||+|+|+.+....+++. +|+ +||.++++++|||+.++.+++++++.+++|++.|.++|+||||
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~ 162 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVA 162 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 9999999999999999999999988777654 566 5999999999999999999999999999999999999999999
Q ss_pred EEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCC
Q 013746 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (437)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~ 247 (437)
|+||.|++.++++...... ......+.++++.+++++++|++||||+|++|.|+ .++.+++.+|+|++|+
T Consensus 163 l~iP~dv~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~--~~a~~~l~~lae~~g~ 232 (542)
T PRK08266 163 LEMPWDVFGQRAPVAAAPP--------LRPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGA--AGAGEEIRELAEMLQA 232 (542)
T ss_pred EEeCHhHhhCccccccccc--------ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCh--hhHHHHHHHHHHHHCC
Confidence 9999999988865321100 01123345677889999999999999999999996 3678999999999999
Q ss_pred CeeeCCCCCCCCCCCCCCcccHH-HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----h-----------
Q 013746 248 PFLPTPMGKGLLPDTHPLAATAA-RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----A----------- 311 (437)
Q Consensus 248 pv~tt~~gkg~~~~~hp~~~G~~-~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----~----------- 311 (437)
||++|++|||.||++||+++|.. .++++++||+||.||+++++. +.++ ..+.+..++|||| .
T Consensus 233 pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~-~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~i~ 310 (542)
T PRK08266 233 PVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP-TFRW-PWRPDGLKVIRIDIDPTEMRRLKPDVAIV 310 (542)
T ss_pred CEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc-cccc-cccCCCCcEEEEECCHHHhCCcCCCceEe
Confidence 99999999999999999999964 457889999999999999876 3332 2234456899986 1
Q ss_pred ---------HHhhhhh---hHHHHHHHH----h---ccCCCCCcc-cHHHHHHHHHhccCCCCCEEEeCcchHHHHHHHh
Q 013746 312 ---------IWKKTKD---NVLKMEVQL----A---KDVVPFNFM-TPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV 371 (437)
Q Consensus 312 ---------l~~~~~~---~~~~~~~~~----~---~~~~~~~~~-~~~~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~ 371 (437)
|.+.+.+ ....|.... . .....+++. .+++.|++.+ |++.+++.|+++...+..++
T Consensus 311 ~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----p~d~ivv~d~g~~~~~~~~~ 386 (542)
T PRK08266 311 ADAKAGTAALLDALSKAGSKRPSRRAELRELKAAARQRIQAVQPQASYLRAIREAL----PDDGIFVDELSQVGFASWFA 386 (542)
T ss_pred cCHHHHHHHHHHhhhhcccCchHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHhc----CCCcEEEeCCcHHHHHHHHh
Confidence 1111111 000111100 0 000122322 1344454444 89999999855444334456
Q ss_pred hhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 372 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 372 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
++...|++++.++++|+|||++|+|||+++++|+++||+++|||||+|++|||+|++||++|++.|
T Consensus 387 ~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~iv 452 (542)
T PRK08266 387 FPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTV 452 (542)
T ss_pred cccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 677889999999999999999999999999999999999999999999999999999999999764
No 47
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=6.2e-81 Score=655.71 Aligned_cols=418 Identities=24% Similarity=0.349 Sum_probs=342.0
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~ 88 (437)
+.+.+++++++|++.|+++||++|||+|+.. .+++++.+++|++|.+|||++|+||||||+|+||+|+||++|+|||+
T Consensus 9 ~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 86 (578)
T PRK06112 9 GFTLNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAA 86 (578)
T ss_pred CCccCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcH
Confidence 4557789999999999999999999998653 24566666789999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 89 ~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
+|+++||++||.+++|||+|+|+.+....+++.+|++||..+++++|||++++.+++++++.+++|++.|.++|+|||||
T Consensus 87 ~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l 166 (578)
T PRK06112 87 TLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVL 166 (578)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
+||.|++.++++.+.... +.. ....+...+.+++..+++++++|++||||+|++|+|+.++++.+++.+|+|++|+|
T Consensus 167 ~iP~Dv~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~p 243 (578)
T PRK06112 167 LLPADLLTAAAAAPAAPR-SNS--LGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLP 243 (578)
T ss_pred EcCHhHhhCccccccCcc-ccc--ccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCC
Confidence 999999988875421100 000 00011123346778899999999999999999999999899999999999999999
Q ss_pred eeeCCCCCCCCCCCCCCcccH------------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------
Q 013746 249 FLPTPMGKGLLPDTHPLAATA------------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------ 310 (437)
Q Consensus 249 v~tt~~gkg~~~~~hp~~~G~------------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------ 310 (437)
|++|++|||.||++||+|+|. ...+++++|||||+||++++++.+.++ ..+.++.++||||
T Consensus 244 V~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~ 322 (578)
T PRK06112 244 VATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW-SLYPEQAQYIHIDVDGEEV 322 (578)
T ss_pred EEEcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccc-cccCCCCeEEEEECChHHh
Confidence 999999999999999999884 244678899999999999987655333 3344567899987
Q ss_pred ------------------hHHhhhhhh--------HHHHHH--------HH-------hccCCCCCcccHHHHHHHHHhc
Q 013746 311 ------------------AIWKKTKDN--------VLKMEV--------QL-------AKDVVPFNFMTPMRIIRDAILG 349 (437)
Q Consensus 311 ------------------~l~~~~~~~--------~~~~~~--------~~-------~~~~~~~~~~~~~~~i~~~l~~ 349 (437)
+|.+.+.+. ...|.. .. .....++++.++++.|++.+
T Consensus 323 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l-- 400 (578)
T PRK06112 323 GRNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVL-- 400 (578)
T ss_pred CccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhC--
Confidence 111111110 011100 00 01112455555666666555
Q ss_pred cCCCCCEEEeCcc-hHHHHHHHhhhhcCCC-eeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHH
Q 013746 350 VGSPAPILVSEGA-NTMDVGRAVLVQTEPR-CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 427 (437)
Q Consensus 350 ~~~~~~i~v~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta 427 (437)
+++++++.|++ +..|..+ +++...+. +++.+.++|+|||++|+|+|+++++|+|+||+++|||||+|++|||+|+
T Consensus 401 --~~~~ivv~d~g~~~~~~~~-~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta 477 (578)
T PRK06112 401 --TGDTIVVADASYSSIWVAN-FLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETA 477 (578)
T ss_pred --CCCCEEEEcccHHHHHHHH-hcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHH
Confidence 88999988844 5566654 44655555 6888889999999999999999999999999999999999999999999
Q ss_pred HHcCcccccC
Q 013746 428 LSCIIMISSI 437 (437)
Q Consensus 428 ~r~~l~i~~i 437 (437)
+|||+|++.|
T Consensus 478 ~~~~l~~~~v 487 (578)
T PRK06112 478 RRMGVPVTIV 487 (578)
T ss_pred HHhCCCeEEE
Confidence 9999999764
No 48
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=1.1e-80 Score=647.55 Aligned_cols=412 Identities=19% Similarity=0.237 Sum_probs=340.9
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~ 88 (437)
+...++|++++|++.|+++||+||||+||+++.+|++++.+ +|++|.+|||++|+|||+||+|+||+|+||++|+|||+
T Consensus 7 ~~~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~ 85 (530)
T PRK07092 7 PAAAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGV 85 (530)
T ss_pred CccccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchH
Confidence 44556899999999999999999999999999999999964 79999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCC-cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeE
Q 013746 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (437)
Q Consensus 89 ~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~ 167 (437)
+|+++||++||.+++|||+|+|+.+....+++.+|+ +||..+++++|||+.++++++++++.+++|++.|.++|+||||
T Consensus 86 ~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~ 165 (530)
T PRK07092 86 GNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVF 165 (530)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 999999999999999999999999999888888755 7999999999999999999999999999999999999999999
Q ss_pred EEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCC
Q 013746 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (437)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~ 247 (437)
|+||.|++.++++... + ......+.+++..+++++++|++||||+|++|.|++++++.+++++|||++|+
T Consensus 166 l~iP~d~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~ 235 (530)
T PRK07092 166 VSIPYDDWDQPAEPLP----A------RTVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRA 235 (530)
T ss_pred EEccHHHhhCcccccc----c------CCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCC
Confidence 9999999988765310 0 01122334677889999999999999999999999988899999999999999
Q ss_pred CeeeCCC-CCCCCCCCCCCcccH------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh----H----
Q 013746 248 PFLPTPM-GKGLLPDTHPLAATA------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA----I---- 312 (437)
Q Consensus 248 pv~tt~~-gkg~~~~~hp~~~G~------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~----l---- 312 (437)
||++|++ +||.||++||+|+|. ...+++++|||||.+|+++.+...+++...|.++.++||||. +
T Consensus 236 pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 315 (530)
T PRK07092 236 PVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAP 315 (530)
T ss_pred cEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcCCC
Confidence 9999876 799999999999984 245688999999999998654443343334555678999971 1
Q ss_pred ----------------Hhhhhhh-HHHHHHH--Hh---ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHH
Q 013746 313 ----------------WKKTKDN-VLKMEVQ--LA---KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGR 369 (437)
Q Consensus 313 ----------------~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~ 369 (437)
.+.+... ...+..+ .. ....++++..+++.|++.+ +++++++.| |.+..|..
T Consensus 316 ~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv~d~g~~~~~~~- 390 (530)
T PRK07092 316 MGDAIVGDIRLALRDLLALLPPSARPAPPARPMPPPAPAPGEPLSVAFVLQTLAALR----PADAIVVEEAPSTRPAMQ- 390 (530)
T ss_pred CCCcccCCHHHHHHHHHHhhccccccchhhhhccccccCCCCCcCHHHHHHHHHHhC----CCCeEEEeCCCccHHHHH-
Confidence 1111000 0000000 00 1122355555566665555 889998888 55555554
Q ss_pred HhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 370 AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 370 ~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.+++..+|++++.+. +|+|||++|+|+|++++.|+++|++++|||+|+|+++||+|++||++|++.|
T Consensus 391 ~~~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~v 457 (530)
T PRK07092 391 EHLPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFV 457 (530)
T ss_pred HhcCcCCCCceEccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEE
Confidence 456888888888664 5999999999999999999999999999999999999999999999998764
No 49
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-80 Score=648.84 Aligned_cols=406 Identities=23% Similarity=0.318 Sum_probs=332.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+++++++|++.|+++||+||||+||+++.+|++++.+ ++|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 4789999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCC--CCC-cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
++||++||.+++|||+|+|++++...+++. +|+ +||.++++++|||++++++++++++.+++|++.|.++|+|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 999999999999999999999988777763 565 69999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
+||.|++.++++.+... .+ .....+.+++..+++++++|.+||||+|++|.|++ ++.+++++|+| +|+|
T Consensus 162 ~iP~dv~~~~~~~~~~~-~~-------~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~~~p 230 (544)
T PRK07064 162 EIPIDIQAAEIELPDDL-AP-------VHVAVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-LGFG 230 (544)
T ss_pred EeCHhHhhccccccccc-cc-------ccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-cCCC
Confidence 99999998886532110 00 11123346778899999999999999999999986 56789999999 9999
Q ss_pred eeeCCCCCCCCCCCCCCcccH-----HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 249 FLPTPMGKGLLPDTHPLAATA-----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 249 v~tt~~gkg~~~~~hp~~~G~-----~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
|++|++|||.||++||+++|. ..++++++|||||+||+++++..+.++ . +....++||||
T Consensus 231 v~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~-~-~~~~~~~i~id~d~~~~~~~~~~~ 308 (544)
T PRK07064 231 VVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLKY-S-LALPRPLIRVDADAAADGRGYPND 308 (544)
T ss_pred EEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCccccccc-c-cCCCCceEEEeCCHHHhCCcCCCC
Confidence 999999999999999999984 356788999999999999987655433 1 22335788887
Q ss_pred ------------hHHhhhhhh---HHHHHHHH----h----ccCCCCCc-ccHHHHHHHHHhccCCCCCEEEeCc-c-hH
Q 013746 311 ------------AIWKKTKDN---VLKMEVQL----A----KDVVPFNF-MTPMRIIRDAILGVGSPAPILVSEG-A-NT 364 (437)
Q Consensus 311 ------------~l~~~~~~~---~~~~~~~~----~----~~~~~~~~-~~~~~~i~~~l~~~~~~~~i~v~~g-~-~~ 364 (437)
+|.+.+.+. ...|.... . ....++.+ ..+++.|++.+ |++++++.|. . +.
T Consensus 309 ~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ii~~d~~~~~~ 384 (544)
T PRK07064 309 LFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAVADLRKGLGPYAKLVDALRAAL----PRDGNWVRDVTISNS 384 (544)
T ss_pred ceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhcccccCcHHHHHHHHHHhC----CCCCEEEeCCccchH
Confidence 111111110 01111110 0 00112222 22444444444 8999998884 3 35
Q ss_pred HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 365 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|..+ +++...|++++.+.+ |+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|++.|
T Consensus 385 ~~~~~-~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 455 (544)
T PRK07064 385 TWGNR-LLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIV 455 (544)
T ss_pred HHHHH-hcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEE
Confidence 55544 567788888887765 899999999999999999999999999999999999999999999999865
No 50
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=7.3e-81 Score=647.23 Aligned_cols=403 Identities=18% Similarity=0.219 Sum_probs=327.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCC-CcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~-i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
+.+++|++.|+++||++|||+||+++.+|++++.+.+ |++|.+|||++|+||||||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 5789999999999999999999999999999997766 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCC-----c-chhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeE
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQE-----L-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~-----~-d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~ 167 (437)
||++||.+++|||+|+|+.++...+++.+|+ + ||..+++++|||+.++.+++++++.+++|++.|.+ +|||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEE
Confidence 9999999999999999999998888877543 6 48899999999999999999999999999999998 569999
Q ss_pred EEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCC
Q 013746 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (437)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~ 247 (437)
|+||.|++.++++... ..+ ..+..+.+.+..+++++++|++||||+|++|+|++++++.+++++|||++|+
T Consensus 160 i~iP~Dv~~~~~~~~~--~~~-------~~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~ 230 (535)
T TIGR03394 160 LEIPRDMVNAEVEPVP--DDP-------AWPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGV 230 (535)
T ss_pred EEechhhccCccCCCC--CCC-------CCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCC
Confidence 9999999988875321 000 1111112235678999999999999999999999999999999999999999
Q ss_pred CeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH---------
Q 013746 248 PFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD--------- 310 (437)
Q Consensus 248 pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd--------- 310 (437)
||+||++|||+||++||+++|. ..++++++|||||+||++++++..... ..+.++.++||||
T Consensus 231 pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~-~~~~~~~~~I~id~~~~~~~~~ 309 (535)
T TIGR03394 231 PVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVS-QRKIDLRRTIHAFDRAVTLGYH 309 (535)
T ss_pred CEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccc-cccCCCCcEEEEeCCEEEECCe
Confidence 9999999999999999999983 356789999999999999987643222 2233456899987
Q ss_pred -----hHH---hhhhhhHHHH--------HHHH-------hccCCCCCcccHHHHHHHHHhccCCCC--CEEEeCcchHH
Q 013746 311 -----AIW---KKTKDNVLKM--------EVQL-------AKDVVPFNFMTPMRIIRDAILGVGSPA--PILVSEGANTM 365 (437)
Q Consensus 311 -----~l~---~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~~i~~~l~~~~~~~--~i~v~~g~~~~ 365 (437)
.+. +.+.+....+ .... ..+..++++.++++.|++.| +++ .+++.|+++..
T Consensus 310 ~~~~~~i~d~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l----~~~~~~ii~~D~G~~~ 385 (535)
T TIGR03394 310 VYADIPLAGLVDALLALLCGLPPSDRTTRGKGPHAYPRGLQADAEPIAPMDIARAVNDRF----ARHGQMPLAADIGDCL 385 (535)
T ss_pred eECCccHHHHHHHHHHhhhcccccccccccccccccccccCCCCCCcCHHHHHHHHHHHh----CCCCCEEEEEccCHHH
Confidence 111 1110000000 0000 01112455555666676666 655 35777855445
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
++...+ .+.+++.+++||+|||++|+|||++++.| +++|+++|||||+|++|||+|++|||+|++.|
T Consensus 386 ~~~~~~----~~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 452 (535)
T TIGR03394 386 FTAMDM----DDAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVI 452 (535)
T ss_pred HHHHhc----CCCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEE
Confidence 444332 36788999999999999999999999986 56688999999999999999999999999865
No 51
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=8.5e-81 Score=649.17 Aligned_cols=405 Identities=20% Similarity=0.253 Sum_probs=326.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
.|++++|++.|+++||++|||+||+++++|++++.+ ++|++|.+|||++|+||||||+|+|| ++||++|+|||++|++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~ 79 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI 79 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence 378999999999999999999999999999999965 48999999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccC----------CCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+||++||.|++|||+|+|+.++.. .+.+.||++ ..+++++|||+..+ +++++++.+++|++.|.+++
T Consensus 80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~ 156 (539)
T TIGR03393 80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER 156 (539)
T ss_pred hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999998742 344456654 67999999999866 78999999999999999875
Q ss_pred CceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCC--CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH
Q 013746 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGI--VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~ 240 (437)
|||||+||.|++.++++.+.. .. ....+.+.+ ++..+++++++|++||||+|++|+|++++++.+++++
T Consensus 157 -gPv~l~iP~Dv~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~ 227 (539)
T TIGR03393 157 -RPGYLMLPVDVAAKAVTPPVN-PL-------VTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQK 227 (539)
T ss_pred -CCEEEEecccccCCccCCCCc-cc-------CcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHH
Confidence 899999999999988764211 00 000111111 1234899999999999999999999998999999999
Q ss_pred HHHHhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh-
Q 013746 241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA- 311 (437)
Q Consensus 241 lae~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~- 311 (437)
|||++++||+||++|||.||++||+++|. ..++++++|||||+||+++++..+.++...+. +.++|+||.
T Consensus 228 lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~-~~~~I~id~~ 306 (539)
T TIGR03393 228 WVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLT-PEQTIDVQPH 306 (539)
T ss_pred HHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCC-cccEEEEcCC
Confidence 99999999999999999999999999984 35678999999999999998765544322243 357899881
Q ss_pred ---HH---------hhhhhhHHHHHHHH---------h------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchH
Q 013746 312 ---IW---------KKTKDNVLKMEVQL---------A------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANT 364 (437)
Q Consensus 312 ---l~---------~~~~~~~~~~~~~~---------~------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~ 364 (437)
+. .........+.+.+ . ....++++..+++.|++.+ +++++++.|+++.
T Consensus 307 ~~~~~~~~~~~~~i~D~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~iiv~d~G~~ 382 (539)
T TIGR03393 307 AARVGNVWFTGIPMNDAIETLVELCEHAGLMWSSSGAIPFPQPDESRSALSQENFWQTLQTFL----RPGDIILADQGTS 382 (539)
T ss_pred eEEECceEeCCcCHHHHHHHHHHHhhhcccccccccccCcCCCCCCCCccCHHHHHHHHHHhc----CCCCEEEEccCch
Confidence 10 00000000000000 0 0012345555566666555 8899999884444
Q ss_pred HHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 365 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.|..+ +++...+++++.++++|+|||++|+|||+|+++|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 383 ~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~v 454 (539)
T TIGR03393 383 AFGAA-DLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIIL 454 (539)
T ss_pred hhhhh-hccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEE
Confidence 45544 5677788899999999999999999999999999999999999999999999999999999999865
No 52
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-79 Score=577.75 Aligned_cols=417 Identities=26% Similarity=0.418 Sum_probs=343.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..++|+|++.+.+.++||++|||+||+.+++++|++.++ .+++|..|||++|+|||.||+|.+||||||++|||||++|
T Consensus 89 vg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATN 168 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATN 168 (675)
T ss_pred cCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCccc
Confidence 468999999999999999999999999999999999875 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
.++++++|+.|++||++++||.++..+|.++|||.|.+.+-|++|||.+.+.+.+++++.|++||.+|+++|||||.+++
T Consensus 169 vvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 169 VVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhH--HHHHHHHhhhhcccccCCCCCH---HHHHHHHHHHHhCCCcEEEEcCCcCcc-chHHHHHHHHHH
Q 013746 171 PTDVLHQTISVSE--AEKLLKEAESAKETVTQGGIVN---SDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVES 244 (437)
Q Consensus 171 P~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~a~rPvil~G~g~~~~-~~~~~l~~lae~ 244 (437)
|.|+..+-.-.+. ...+|. ......-...+++ ..+++++++|+.||||+|++|+|+..+ ++..+|.+|.|+
T Consensus 249 PKDvta~~l~~pip~~~~lPs---n~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser 325 (675)
T KOG4166|consen 249 PKDVTAQLLIPPIPQAMRLPS---NAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSER 325 (675)
T ss_pred cHHHHHHHhcCCchhhhcCCc---hhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHh
Confidence 9999766532211 111111 0001111112233 568999999999999999999999654 567899999999
Q ss_pred hCCCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCce---------EEE
Q 013746 245 TGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK---------FVL 308 (437)
Q Consensus 245 ~g~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~---------~i~ 308 (437)
++|||.||.+|-|.+|+++++.+-+ +++.+++++||||++|.||+++.+ |..+.|.+.++ +||
T Consensus 326 ~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRVT-Gn~s~FAp~Ar~aaae~rggIiH 404 (675)
T KOG4166|consen 326 TQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRVT-GNLSAFAPRARRAAAEGRGGIIH 404 (675)
T ss_pred hcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccccc-cchhhhChhhhhhhhcccCceEE
Confidence 9999999999999999999997642 578899999999999999999754 66677777666 899
Q ss_pred hH----h------------------HH--hhhhhh-----HHHHHHHH--hccCCCCCcc--------cHHHHHHHHHhc
Q 013746 309 VD----A------------------IW--KKTKDN-----VLKMEVQL--AKDVVPFNFM--------TPMRIIRDAILG 349 (437)
Q Consensus 309 vd----~------------------l~--~~~~~~-----~~~~~~~~--~~~~~~~~~~--------~~~~~i~~~l~~ 349 (437)
+| . |. ....++ +..|..++ ++...|+++. .+..+|+ .|++
T Consensus 405 fdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk-~Ldk 483 (675)
T KOG4166|consen 405 FDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIK-VLDK 483 (675)
T ss_pred EecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHH-HHHH
Confidence 88 1 11 011111 11232222 3333444321 2333342 3344
Q ss_pred cCCC---CCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHH
Q 013746 350 VGSP---APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425 (437)
Q Consensus 350 ~~~~---~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~ 425 (437)
+..+ ..|+.+. |.|.+|.+++ +...+|++|+++++.|+||||+|+||||++|+|+..||-|.||+||.|+.|||+
T Consensus 484 ~t~d~~~kviitTGVGqHQMWAAqf-y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~Mt~~ELa 562 (675)
T KOG4166|consen 484 LTDDTGRKVIITTGVGQHQMWAAQF-YNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIMTVQELA 562 (675)
T ss_pred hccCcCceEEEeccccHHHHHHHHH-hcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeeeehHhhh
Confidence 4222 2344444 8899998874 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccc
Q 013746 426 VWLSCIIMI 434 (437)
Q Consensus 426 Ta~r~~l~i 434 (437)
|+++.++|+
T Consensus 563 t~rq~~~PV 571 (675)
T KOG4166|consen 563 TIRQENLPV 571 (675)
T ss_pred hhhhcCCce
Confidence 999999996
No 53
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=2.2e-76 Score=620.68 Aligned_cols=413 Identities=13% Similarity=0.102 Sum_probs=320.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..++++++|++.|+++||+||||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 7 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N 86 (568)
T PRK07449 7 FNTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVAN 86 (568)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHh
Confidence 34899999999999999999999999999999999965 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCc--CchHHHHHHHHHH---hhcCCCce
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI--TEVPKCVAQVLER---AVSGRPGG 165 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~--~~~~~~l~~A~~~---a~~~~~GP 165 (437)
+++||++||.+++|||+|+|+++....+++.+|++||.++++++|++..+..+. +.++..++++++. |.++|+||
T Consensus 87 ~l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GP 166 (568)
T PRK07449 87 LYPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGP 166 (568)
T ss_pred hhHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999989999999999999999999777776554 3344444444444 77889999
Q ss_pred eEEEcCcchhccccchhH-HHHHHHHhhhhcccc----cCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH
Q 013746 166 CYLDLPTDVLHQTISVSE-AEKLLKEAESAKETV----TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (437)
Q Consensus 166 v~l~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~ 240 (437)
|||+||.|++..+.+++. ...... +...... ..+.+++..+++++++|++ |||+|++|.|+++++ +++.+
T Consensus 167 V~i~iP~Dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~--~~l~~ 241 (568)
T PRK07449 167 VHINCPFREPLYPDDDDDTGSPWLA--PLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEG--QAIAA 241 (568)
T ss_pred EEEeCCCCCCCCCCCcccccccccc--cccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHH--HHHHH
Confidence 999999998654432110 000000 0000000 0123455678999999998 999999999997543 89999
Q ss_pred HHHHhCCCeeeCCCCCCCCCCCCCCcccHH--------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh-
Q 013746 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA- 311 (437)
Q Consensus 241 lae~~g~pv~tt~~gkg~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~- 311 (437)
|+|++|+||++|++||+.+|++||+++|.. ..+.+++||+||++|+++++..+..+.. ....++||||.
T Consensus 242 lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~--~~~~~~i~id~d 319 (568)
T PRK07449 242 LAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLA--DCEPEYWVVDPG 319 (568)
T ss_pred HHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHh--cCCCCEEEECCC
Confidence 999999999999999999999999999853 2356789999999999996543322211 12238888871
Q ss_pred -----------------HHhhhhh----hHHHHH-------HH----Hh--ccCCCCCcccHHHHHHHHHhccCCCCCEE
Q 013746 312 -----------------IWKKTKD----NVLKME-------VQ----LA--KDVVPFNFMTPMRIIRDAILGVGSPAPIL 357 (437)
Q Consensus 312 -----------------l~~~~~~----~~~~~~-------~~----~~--~~~~~~~~~~~~~~i~~~l~~~~~~~~i~ 357 (437)
+...+.. ....|. +. .. ....++++.++++.|++.+ |+++++
T Consensus 320 ~~~~~~~~~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~iv 395 (568)
T PRK07449 320 PGRLDPAHHATRRLTASVATWLEAHPAEKRKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLL----PEGGQL 395 (568)
T ss_pred CCcCCCCCCceEEEEEcHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhC----CCCCeE
Confidence 1011110 000110 00 00 0134566666666666655 888877
Q ss_pred EeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCccccc
Q 013746 358 VSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 358 v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~ 436 (437)
+.| |.+..|+ ..++....+.+++.+.++++|||++|+|||++++ |+|+||+++|||||+|++|||+|++||++|++.
T Consensus 396 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~i 473 (568)
T PRK07449 396 FVGNSLPVRDV-DAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPLTI 473 (568)
T ss_pred EEECcHHHHHH-HHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCeEE
Confidence 766 4444444 4455666778888888899999999999999999 899999999999999999999999999999876
Q ss_pred C
Q 013746 437 I 437 (437)
Q Consensus 437 i 437 (437)
|
T Consensus 474 v 474 (568)
T PRK07449 474 V 474 (568)
T ss_pred E
Confidence 4
No 54
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=4.9e-72 Score=543.54 Aligned_cols=409 Identities=23% Similarity=0.340 Sum_probs=336.7
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
+++|.++||+++|.+.||+++||+||+++++|+|.+.. +++||+.|+||.+|+||||||+|++| .+++++|.|+|.+.
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 56899999999999999999999999999999999975 57999999999999999999999999 89999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCC--C-----Cc-chhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDF--Q-----EL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~--q-----~~-d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+++||+.+|.+++|||+|+|.+++....++.+ + ++ .+..|++++++....+++.++++..|+|+++.+...+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998876554431 1 22 3678999999999999999999999999999999876
Q ss_pred CceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHH
Q 013746 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~la 242 (437)
.||||.+|.|+.+.+++.+ ..+++. ......+....+.++.++++|+++|||+|++|..+.|.+..+++++|+
T Consensus 161 -RPvYI~lP~dva~~~~~~p-~~Pl~~-----~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~ 233 (557)
T COG3961 161 -RPVYIGLPADVADLPIEAP-LTPLDL-----QLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLI 233 (557)
T ss_pred -CCeEEEcchHHhcCcCCCC-CCcccc-----ccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHH
Confidence 7999999999999998765 111110 011122223345678889999999999999999999999999999999
Q ss_pred HHhCCCeeeCCCCCCCCCCCCCCcccHH--------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----
Q 013746 243 ESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---- 310 (437)
Q Consensus 243 e~~g~pv~tt~~gkg~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---- 310 (437)
+++++|++++++|||.|+|.||.|+|.+ ..+.++.|||||.+|+.++++.+.++...+. ..++|+++
T Consensus 234 ~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~-~~~~i~~~~~~v 312 (557)
T COG3961 234 NATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYK-PANIIEIHPDSV 312 (557)
T ss_pred HhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecC-cccEEEeccCee
Confidence 9999999999999999999999999953 4578899999999999999988766654444 35788776
Q ss_pred ----------hHHhhhhhhHHHHHHH-----------------HhccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cc
Q 013746 311 ----------AIWKKTKDNVLKMEVQ-----------------LAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GA 362 (437)
Q Consensus 311 ----------~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~ 362 (437)
.+...+.+...+.... ......|++..++++.+..+| .++++++.| |+
T Consensus 313 ~I~~~~f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl----~p~dviiaetGt 388 (557)
T COG3961 313 KIKDAVFTNLSMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFL----KPGDVIIAETGT 388 (557)
T ss_pred EecccccCCeeHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhC----CCCCEEEEcccc
Confidence 1112221111111100 011234567777888887777 788888877 76
Q ss_pred hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccc
Q 013746 363 NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~ 435 (437)
+.+...+. ...+.-+++...-||+|||++|+|+|+++|.||||||+|+||||||||.||++|.+|+||+..
T Consensus 389 S~FG~~~~--~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ 459 (557)
T COG3961 389 SFFGALDI--RLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPI 459 (557)
T ss_pred ccccceee--ecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcE
Confidence 65555443 334556888888999999999999999999999999999999999999999999999999865
No 55
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=1.6e-70 Score=556.83 Aligned_cols=376 Identities=16% Similarity=0.153 Sum_probs=301.4
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG 94 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~g 94 (437)
.+++|++.|+++||+||||+||+++.+|++++.+ ++|++|.+|||++|+||||||+|+|||||||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 4799999999999999999999999999999964 579999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCc------hHHHHHHHHHHhhcCCCceeEE
Q 013746 95 LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 95 i~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~~~~GPv~l 168 (437)
|++||.+++|||+|+|++++...+++.+|++||.++|+++|||+.+++++++ +++.+++|++.|.++|||||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred EcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
+||.|++..+.+...........+..........+++..+++++++|++||||+|++|.|+.++ +.+++.+|+|++|+|
T Consensus 162 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~lae~~~~P 240 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAALAEALGWP 240 (432)
T ss_pred eCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHHHHHhCCCe
Confidence 9999997655421100000000000001112223567789999999999999999999999876 899999999999999
Q ss_pred eeeCCCCCCCCCCCCCCcccHH--------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------
Q 013746 249 FLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------- 310 (437)
Q Consensus 249 v~tt~~gkg~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------- 310 (437)
|++|++|||.+ ++| +++|.. ..+++ ++|+||+||++++++.+.++. +.++.++||||
T Consensus 241 V~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~vd~d~~~~~~~~ 315 (432)
T TIGR00173 241 LLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQWL--ARQPAEYWVVDPDPGWLDPSH 315 (432)
T ss_pred EEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHHH--hCCCCcEEEECCCCCccCCCC
Confidence 99999999999 789 999843 22456 999999999999775544331 23456899997
Q ss_pred ---------------hHHhhhhh---h-HHHHHHH-------Hh--ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcc
Q 013746 311 ---------------AIWKKTKD---N-VLKMEVQ-------LA--KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA 362 (437)
Q Consensus 311 ---------------~l~~~~~~---~-~~~~~~~-------~~--~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~ 362 (437)
.|.+.++. . ...|.+. .. ....++++.++++.|++.+ |+|.+++.|++
T Consensus 316 ~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l----p~d~ivv~d~g 391 (432)
T TIGR00173 316 HATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALREVLAEEPLSELSLARALSQLL----PEGAALFVGNS 391 (432)
T ss_pred CceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhC----CCCCeEEEECC
Confidence 11111111 0 1111110 00 1233566666677666666 99999998865
Q ss_pred hHHHHHHHhhhhc-CCCeeecCCCCCCCcchHHHHHHHhH
Q 013746 363 NTMDVGRAVLVQT-EPRCRLDAGTWGTMGVGLGYCIAAAI 401 (437)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~~~~~~g~mG~~lpaAiGaal 401 (437)
+...+...++... .|++++.++++|+||+++|+|||+++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 392 MPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred HHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 5554445566776 79999999999999999999999986
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=1.4e-68 Score=610.90 Aligned_cols=417 Identities=17% Similarity=0.175 Sum_probs=318.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
+..+++|++.|+++||+||||+||+++.+|++++.+ ++|++|.+|||++|+|||+||+|+|||||||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 568999999999999999999999999999999965 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCch------HHHHHHHHHHhhcCCCcee
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEV------PKCVAQVLERAVSGRPGGC 166 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~------~~~l~~A~~~a~~~~~GPv 166 (437)
+|+++|+.+++|||+|||+++....+++.+|++||..+|+++|||++++++++++ ++.+++|++.|+++|||||
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPV 460 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPV 460 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999993 5899999999999999999
Q ss_pred EEEcCcchhccccchhH-------HHHHHHH-hhhhc----ccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccch
Q 013746 167 YLDLPTDVLHQTISVSE-------AEKLLKE-AESAK----ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234 (437)
Q Consensus 167 ~l~iP~dv~~~~~~~~~-------~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~ 234 (437)
||+||.|.......... ....... .+... .....+.+++..+++++++|.+||||+|++|+|+..+++
T Consensus 461 hL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG~G~~~~~a 540 (1655)
T PLN02980 461 HINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIGAIHTEDDI 540 (1655)
T ss_pred EEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEcCCCchHHH
Confidence 99999653221110000 0000000 00000 000112345678999999999999999999999876655
Q ss_pred HHHHHHHHHHhCCCeeeCCCC-C------CCCCC--CCCCcccHHH-------HhchhcCCEEEEEcCcCCCccccCCCC
Q 013746 235 EGELKKLVESTGIPFLPTPMG-K------GLLPD--THPLAATAAR-------SLAIGQCDVALVVGARLNWLLHFGEPP 298 (437)
Q Consensus 235 ~~~l~~lae~~g~pv~tt~~g-k------g~~~~--~hp~~~G~~~-------~~~l~~aDlvl~iG~~~~~~~~~~~~~ 298 (437)
. ++.+|||++|+||++|+++ | |.||+ +||+++|... ...++++|+||.||+++++....++..
T Consensus 541 ~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~rl~s~~~t~~~~ 619 (1655)
T PLN02980 541 W-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITSKRVSQMLE 619 (1655)
T ss_pred H-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCccccHHHHHHHH
Confidence 5 4689999999999999974 5 99999 8999998543 235679999999999997432222222
Q ss_pred CCCCCceEEEhH---------------------hHHhhhh----h-hHHHHHHH-----------Hh---ccCCCCCccc
Q 013746 299 KWSKDVKFVLVD---------------------AIWKKTK----D-NVLKMEVQ-----------LA---KDVVPFNFMT 338 (437)
Q Consensus 299 ~~~~~~~~i~vd---------------------~l~~~~~----~-~~~~~~~~-----------~~---~~~~~~~~~~ 338 (437)
.+.+ .++|||| ...+.+. . ....|... .. ....++++.+
T Consensus 620 ~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (1655)
T PLN02980 620 KCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQIHAESSLTEPY 698 (1655)
T ss_pred hCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Confidence 1222 3588887 0111110 0 01111110 00 0112355555
Q ss_pred HHHHHHHHHhccCCCCCEEEeCcchH-----HHHHH----------HhhhhcCCCeeec-CCCCCCCcc--hHHHHHHHh
Q 013746 339 PMRIIRDAILGVGSPAPILVSEGANT-----MDVGR----------AVLVQTEPRCRLD-AGTWGTMGV--GLGYCIAAA 400 (437)
Q Consensus 339 ~~~~i~~~l~~~~~~~~i~v~~g~~~-----~~~~~----------~~~~~~~~~~~~~-~~~~g~mG~--~lpaAiGaa 400 (437)
+++.|++.| |+|.+++.|+++. .|... ++++...|++++. ++++|+||+ ++|+|||++
T Consensus 699 v~~~L~~~L----p~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpaAIGaa 774 (1655)
T PLN02980 699 VAHVISEAL----TSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLSTAIGFA 774 (1655)
T ss_pred HHHHHHHhC----CCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHHHHHHh
Confidence 666666555 9999888875432 22211 1223456777875 788999999 599999999
Q ss_pred HhCCCCcEEEEEcCccccCCHHHHHHHHHc--CcccccC
Q 013746 401 IACPERLVVAVEGDSGFGFSAVEVEVWLSC--IIMISSI 437 (437)
Q Consensus 401 la~p~~~vv~i~GDG~f~~~~~eL~Ta~r~--~l~i~~i 437 (437)
+++ +|+|++++|||||+|++|||+|++|+ ++|++.|
T Consensus 775 la~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iV 812 (1655)
T PLN02980 775 VGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTIL 812 (1655)
T ss_pred hcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEE
Confidence 998 99999999999999999999999995 9998764
No 57
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-65 Score=495.87 Aligned_cols=412 Identities=21% Similarity=0.325 Sum_probs=329.7
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
.+++.+++|+++|.+.||++|||+||+.++.|+|-|+. +++|++.|+||.+|+||||||||..| .++|++|.|.|.+.
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELS 80 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhh
Confidence 45789999999999999999999999999999999975 57999999999999999999999999 89999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCC--CC-----c-chhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDF--QE-----L-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~--q~-----~-d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+++||+.||.+++|||+|+|.+++...+++.+ ++ + -+.+|++.+++++..+++.+++++.|++|++.|....
T Consensus 81 AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~ 160 (561)
T KOG1184|consen 81 ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES 160 (561)
T ss_pred hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887665431 11 1 2678999999999999999999999999999998754
Q ss_pred CceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHH
Q 013746 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~la 242 (437)
.||||.||.|+.+.+++...+.+.|.. ....+.......+.++.++++|.++++|+|++|...++.+..++..+|+
T Consensus 161 -rPVYi~iP~n~~~~~~~~~~l~~~p~~---~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~ 236 (561)
T KOG1184|consen 161 -KPVYIGVPANLADLPVPAFGLLPVPLD---LSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELA 236 (561)
T ss_pred -CCeEEEeecccccCcCCcccCCCCCcc---cCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHH
Confidence 799999999999988876532222110 0011222233456778899999999999999999999999999999999
Q ss_pred HHhCCCeeeCCCCCCCCCCCCCCcccHH--------HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----
Q 013746 243 ESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---- 310 (437)
Q Consensus 243 e~~g~pv~tt~~gkg~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---- 310 (437)
++++.|++.|++|||.+||+||+|.|.+ ..+.++.+|++|.+|+.++++++.++...+ +..++++++
T Consensus 237 ~~~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~-k~~~~i~~~~d~v 315 (561)
T KOG1184|consen 237 DATGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLY-KKKNAIEFHSDRV 315 (561)
T ss_pred HhhCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeec-CccceEEEecceE
Confidence 9999999999999999999999999953 457889999999999999998776653322 345666654
Q ss_pred -----------------hHHhhhhhhHHHHHH--HH---------hccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-c
Q 013746 311 -----------------AIWKKTKDNVLKMEV--QL---------AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-G 361 (437)
Q Consensus 311 -----------------~l~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g 361 (437)
.|.+++.++....+. .. .....+++..+.++.++..| .+.+++++| |
T Consensus 316 ~i~~~~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l----~~~d~v~~ETG 391 (561)
T KOG1184|consen 316 KIRNATFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFL----SSGDVVIAETG 391 (561)
T ss_pred EeccccccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhc----CCCceEEEecc
Confidence 111222211111110 00 01122334445566666665 778888887 6
Q ss_pred chHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccc
Q 013746 362 ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~ 435 (437)
.+.+.+.+. .....-.+.....||++||++|+++|++.|.|+||||+|+|||||++|.||++|++|+|||..
T Consensus 392 ~S~F~~~~~--~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~ 463 (561)
T KOG1184|consen 392 DSWFGINQT--KFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPI 463 (561)
T ss_pred cceecceee--ccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcE
Confidence 655444433 333445666777899999999999999999999999999999999999999999999999864
No 58
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=3e-65 Score=469.44 Aligned_cols=411 Identities=28% Similarity=0.389 Sum_probs=353.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhH
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCV 89 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~ 89 (437)
.+|..-|+-+..|++.||+..||+||..+++++.+|++. +|++|..||-.+|.+||.||.|++ |..|||+.||||.-+
T Consensus 2 akmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagt 81 (592)
T COG3960 2 AKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (592)
T ss_pred cchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCcc
Confidence 467888999999999999999999999999999999876 599999999999999999999975 899999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
..++|++.|+.|++|+|+||||.|+....+..||.+|..++.+|++||+.++..|..++..+++||+.++++|||||.|+
T Consensus 82 dmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlid 161 (592)
T COG3960 82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLID 161 (592)
T ss_pred chhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
+|.|+|-.+++.+...-. +.+...|.......++++.+|.+|+||+|++|+|+.+.++.+.+.+|+|..|+||
T Consensus 162 lp~dvq~aeiefd~d~ye-------pl~~~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpv 234 (592)
T COG3960 162 LPFDVQVAEIEFDPDMYE-------PLPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPV 234 (592)
T ss_pred cccceEEEEEecCccccC-------cCCcCCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcc
Confidence 999999888753321000 1233455555667899999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-----------
Q 013746 250 LPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----------- 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----------- 310 (437)
+.|.+|-|++|+|||+..|+ +++..+-++|+|+.||.|+.... .|..+.+-++.++||||
T Consensus 235 iptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrh-tgsv~vyt~gr~fihvdieptqigrvf~ 313 (592)
T COG3960 235 IPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRH-TGSVEVYTEGRKFIHVDIEPTQIGRVFC 313 (592)
T ss_pred cchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcc-cCceeeeecCceEEEEeccccccceeec
Confidence 99999999999999999985 45667889999999999997654 46666666788999998
Q ss_pred -----------hHHhhhh---h--------hHHHHHHH-------H----hccCCCCCcccHHHHHHHHHhccCCCCCEE
Q 013746 311 -----------AIWKKTK---D--------NVLKMEVQ-------L----AKDVVPFNFMTPMRIIRDAILGVGSPAPIL 357 (437)
Q Consensus 311 -----------~l~~~~~---~--------~~~~~~~~-------~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~ 357 (437)
+|..-+. + ....|.+. + .-++-|+.+.++++.+++.+ +.|..+
T Consensus 314 pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~f----grd~~y 389 (592)
T COG3960 314 PDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAF----GRDVCY 389 (592)
T ss_pred CccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhc----CCceeE
Confidence 1110000 0 00111110 1 12345777788888888777 888777
Q ss_pred EeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccc
Q 013746 358 VSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 358 v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~ 435 (437)
|+. |.+.+..+ +++...+|+.|+..+.-|.+||.+|+|+|...+.|+|.||++.||-.|+|-+.||...+|+++|-+
T Consensus 390 vstiglsqia~a-qflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyi 467 (592)
T COG3960 390 VTTIGLSQIAAA-QFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYI 467 (592)
T ss_pred EEeccHHHHhhh-hhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceE
Confidence 766 77777555 467999999999999999999999999999999999999999999999999999999999999964
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-58 Score=436.77 Aligned_cols=417 Identities=20% Similarity=0.250 Sum_probs=329.4
Q ss_pred CccCCcHHHHHHHHHHhcC---------CCEEEecCCC-ChHHHHHHHHhC--CCcEeeccchHHHHHHHHHHHhHhC--
Q 013746 10 QNAQIDGNTLAAKSLSLFG---------ATHMFGVVGI-PVTSLANRAVQL--GVRFIAFHNEQSAGYAASAYGYLTG-- 75 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~G---------v~~vFg~pG~-~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~gyar~tg-- 75 (437)
.+..+|.+++++++|.+.= |.-||.+-|. .+..+-++|+.. .+..+..+||++-+++|.||+|...
T Consensus 3 kTvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rr 82 (617)
T COG3962 3 KTVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRR 82 (617)
T ss_pred ceehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhc
Confidence 4567899999999998763 2356667775 446788899753 4999999999999999999999764
Q ss_pred CcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCc--------chhhhccCccceeeecCCcCch
Q 013746 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL--------DQVEAVKPFSKFAVKAKDITEV 147 (437)
Q Consensus 76 ~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~--------d~~~~~~~~~k~~~~v~~~~~~ 147 (437)
|.-+|..+.|||++|++++.+.|..+|+|+|+|-|+.-....-.--+|.+ ..-+.|||++||..+|++||++
T Consensus 83 r~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl 162 (617)
T COG3962 83 RIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQL 162 (617)
T ss_pred eeeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHH
Confidence 45566777799999999999999999999999999875433222223432 2337899999999999999999
Q ss_pred HHHHHHHHHHhhc-CCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEc
Q 013746 148 PKCVAQVLERAVS-GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226 (437)
Q Consensus 148 ~~~l~~A~~~a~~-~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G 226 (437)
-..+.||++.++. ...|||-|.+|.|++.+..+.+...-... .....++.|++.+++.++++|+++|||+|++|
T Consensus 163 ~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~r-----v~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaG 237 (617)
T COG3962 163 MSALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKR-----VWRIRRPPPDERELADAAALIKSAKKPLIVAG 237 (617)
T ss_pred HHHHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhh-----hhhccCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999999987 36799999999999999887654321111 23456778899999999999999999999999
Q ss_pred CCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCC
Q 013746 227 KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPK 299 (437)
Q Consensus 227 ~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~ 299 (437)
+|+.++++.++|++|+|..|+||+.|..|||.++.|||+++|. +++.+.++|||||.||+|+.++.+ +....
T Consensus 238 GGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTT-gS~al 316 (617)
T COG3962 238 GGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTT-GSKAL 316 (617)
T ss_pred CceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEeccccccccc-ccHHH
Confidence 9999999999999999999999999999999999999999983 567788999999999999998755 44444
Q ss_pred CC-CCceEEEhH-----------------------hHHhhhhhh---H----------HHHHHHHhccCC--C-----CC
Q 013746 300 WS-KDVKFVLVD-----------------------AIWKKTKDN---V----------LKMEVQLAKDVV--P-----FN 335 (437)
Q Consensus 300 ~~-~~~~~i~vd-----------------------~l~~~~~~~---~----------~~~~~~~~~~~~--~-----~~ 335 (437)
|. ++.+++.++ +|.+.+... . ..|......... . .+
T Consensus 317 F~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~pt 396 (617)
T COG3962 317 FKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPT 396 (617)
T ss_pred hcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCcc
Confidence 54 677898876 111111100 0 011111100000 0 12
Q ss_pred cccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcC
Q 013746 336 FMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414 (437)
Q Consensus 336 ~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GD 414 (437)
...+.-.|++.. +++++++.. |+..-.+ +.+|+...|.+|....+|++|||-+..++|+|++.|+|.|++++||
T Consensus 397 q~~vigav~~~~----~~~svvvcAAGsLPGdL-hkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGD 471 (617)
T COG3962 397 QTQVIGAVQRTI----SDDSVVVCAAGSLPGDL-HKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGD 471 (617)
T ss_pred chhHHHHHHhhc----CCCcEEEEeCCCCcHHH-HHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEcc
Confidence 233444555544 888888776 6655555 4578999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHcCcccccC
Q 013746 415 SGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 415 G~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|||+|--.||.|++++|++|++|
T Consensus 472 GSymMlnSEL~Tsv~~g~Ki~Vv 494 (617)
T COG3962 472 GSYMMLNSELATSVMLGKKIIVV 494 (617)
T ss_pred cchhhhhHHHHHHHHcCCeEEEE
Confidence 99999999999999999999764
No 60
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=1.9e-46 Score=329.80 Aligned_cols=162 Identities=27% Similarity=0.464 Sum_probs=156.7
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|++|||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 58999999999999999999999999999999976 68999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
|+++||.|++|||+|+|+.++...+++.+|++||.++++++|||+.++++++++++.+++|++.|.++ +|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAK-RGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChH
Confidence 99999999999999999999998899999999999999999999999999999999999999999995 69999999999
Q ss_pred hhcc
Q 013746 174 VLHQ 177 (437)
Q Consensus 174 v~~~ 177 (437)
++.+
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9864
No 61
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=5.8e-45 Score=317.90 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=150.1
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~ 96 (437)
++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+||||||+|+||||+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~ 80 (162)
T cd07037 1 QALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV 80 (162)
T ss_pred ChHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH
Confidence 37899999999999999999999999999965 58999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCc------hHHHHHHHHHHhhcCCCceeEEEc
Q 013746 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 97 ~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+||.+++|||+|+|+.+....+++.+|++||.++++++|||+.+++++++ +++.+++|++.|.++|||||||+|
T Consensus 81 ~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 81 EAYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred HHHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 99999999999999999988899999999999999999999999999999 999999999999999999999999
Q ss_pred Cc
Q 013746 171 PT 172 (437)
Q Consensus 171 P~ 172 (437)
|.
T Consensus 161 P~ 162 (162)
T cd07037 161 PF 162 (162)
T ss_pred cC
Confidence 94
No 62
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=8.1e-44 Score=316.90 Aligned_cols=169 Identities=34% Similarity=0.653 Sum_probs=159.2
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
||++|+|++.|+++||+||||+||+.+.+|++++.+. ++++|.+|||.+|+|||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 7999999999999999999999999999999999877 799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCC-CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q-~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++|++|+.+++|||+|+|+++....+++.+| ++||..++++++||++++.+++++++.+++|++.|.++++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cchhccccchh
Q 013746 172 TDVLHQTISVS 182 (437)
Q Consensus 172 ~dv~~~~~~~~ 182 (437)
.|++.++++++
T Consensus 161 ~dv~~~~~~~~ 171 (172)
T PF02776_consen 161 QDVQEAEVDEP 171 (172)
T ss_dssp HHHHTSEEECT
T ss_pred hhHhhCccCCC
Confidence 99999988754
No 63
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-41 Score=335.11 Aligned_cols=415 Identities=13% Similarity=0.101 Sum_probs=295.9
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
......+..+++.|..+||+++.-+||+++.||.-++.+. +|+++...+|++|+|+|.|.+|.+++|.+++||||++++
T Consensus 5 ~~nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~A 84 (566)
T COG1165 5 NPNTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVA 84 (566)
T ss_pred chhHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhh
Confidence 3456788999999999999999999999999999887765 799999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCch-------HHHHHHHHHHhhcCC
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEV-------PKCVAQVLERAVSGR 162 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~-------~~~l~~A~~~a~~~~ 162 (437)
|+.+++.||...++|+|++|+++|.+..+.|+.|.+||..+|.++++|+..+..|+.- ...-.++...|++..
T Consensus 85 Nl~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~ 164 (566)
T COG1165 85 NLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPH 164 (566)
T ss_pred hccHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999999988753 333445666676788
Q ss_pred CceeEEEcCcchhccccchhHHHHHHHHhhhhc----c-cccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHH
Q 013746 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK----E-TVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~ 237 (437)
+||||||+|.+----+..++.....+...+.++ . +...... ++.+.+ -....++|.+|++|.-.. ...++
T Consensus 165 ~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~rgviv~G~~~~--~e~~~ 239 (566)
T COG1165 165 AGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVDQG-PDLLSE--WFFWRQKRGVIVAGRMSA--QEGKG 239 (566)
T ss_pred CCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeeecc-cccccc--hhhhcccCceEEEecCch--hhhHH
Confidence 899999999874322222221000000000000 0 0000000 112222 223467999999998764 55667
Q ss_pred HHHHHHHhCCCeeeCCCCC-C-CCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-----
Q 013746 238 LKKLVESTGIPFLPTPMGK-G-LLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----- 310 (437)
Q Consensus 238 l~~lae~~g~pv~tt~~gk-g-~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----- 310 (437)
+.++++.+|+|+++++.+. + .++..+.+..-....+.+.. |.||.+|.+........|...+ .+.+++.||
T Consensus 240 i~~~a~~lg~PilaDplS~lr~~i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~-~~~~~~vvd~~~~~ 317 (566)
T COG1165 240 ILALANTLGWPILADPLSPLRNYIPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADT-EPIEYWVVDPGGGW 317 (566)
T ss_pred HHHHHHHhCCceecccccccCCCcccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhcc-CCCcEEEEcCCCCc
Confidence 9999999999999998752 1 23443333332333344545 9999999988665433332222 224555555
Q ss_pred ----------------hHHhhh------hhh-HHHHH---HHH------hccCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 ----------------AIWKKT------KDN-VLKME---VQL------AKDVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 ----------------~l~~~~------~~~-~~~~~---~~~------~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
...+.+ ++. ..+|. +.. ......++..+++..+.+.| |+++.++
T Consensus 318 ~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~~~~~~e~~~a~~l~~~l----p~~~~LF 393 (566)
T COG1165 318 LDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLAAEALTEAHLAAALADLL----PPQDQLF 393 (566)
T ss_pred CCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHhC----CCCCeEE
Confidence 111111 100 01110 000 01111445556666666666 8777665
Q ss_pred eCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 359 SEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 359 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
...+..+.....++....+...+.++|-++|.+-++.|+|++.+. .+++|+++||-||+++++.|.-..+...|++.|
T Consensus 394 vgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~k~~~~~ltIv 471 (566)
T COG1165 394 VGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLLKKVPQPLTIV 471 (566)
T ss_pred EecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhcCCCCCCeEEE
Confidence 554444544455556557888999999999999999999999986 679999999999999999999988888887653
No 64
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=3.4e-41 Score=296.08 Aligned_cols=153 Identities=25% Similarity=0.395 Sum_probs=143.3
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~ 96 (437)
|+|++.|+++||+||||+||+.+.+|++++.+. +|++|.+|||++|+|||+||+|+| +|+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 579999999999999999999999999999654 899999999999999999999999 799999999999999999999
Q ss_pred HhhhCCCcEEEEecCCCccCCCCCCC-------CCc-chhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 97 NGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 97 ~A~~~~~Pvl~I~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
+||.|++|||+|+|+.+....+++.+ |++ ||.++++++|||++++++++++++.+++||+.|.++| |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887777552 334 6899999999999999999999999999999999987 99999
Q ss_pred EcCc
Q 013746 169 DLPT 172 (437)
Q Consensus 169 ~iP~ 172 (437)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9994
No 65
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=1.3e-37 Score=272.58 Aligned_cols=155 Identities=36% Similarity=0.651 Sum_probs=150.6
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN 97 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~ 97 (437)
++|++.|+++||+++||+||+.+.++++++.+.++++|.++||.+|++||+||+|.+||+++|++|+|||++|++++|.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 98 GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 98 A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
|+.+++|||+|+|+++....+++.+|+.||..++++++||+.++++++++.+.+++|++.|.++|+|||||++|.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 999999999999999999999889999999999999999999999999999999999999999989999999984
No 66
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=100.00 E-value=1.7e-33 Score=247.75 Aligned_cols=151 Identities=18% Similarity=0.119 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
++|+|++.|+++||+++||+||+++.++++++.+ .+|++|.+|||++|++||+||+|.+++ +|++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 4799999999999999999999999999999963 579999999999999999999998776 999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCC--CCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
++++|++|+.+++|||+|+|+.+....+ +..+|++|+..++++ +||+.++.+++++++.+++|++.|.++| +||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999988766 456778999999999 9999999999999999999999999998 89998
Q ss_pred Ec
Q 013746 169 DL 170 (437)
Q Consensus 169 ~i 170 (437)
.+
T Consensus 157 ~~ 158 (160)
T cd07034 157 LS 158 (160)
T ss_pred Ec
Confidence 65
No 67
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.97 E-value=2.2e-31 Score=232.73 Aligned_cols=153 Identities=21% Similarity=0.366 Sum_probs=145.1
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~ 96 (437)
+++++.|+++||+++||+||+...++++++.+ .+++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 47899999999999999999999999999865 47999999999999999999999999 99999999999999999999
Q ss_pred HhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 97 ~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+|+.+++|||+|+++.+....+.+.+|+.|+..++++++||...++++++..+.+.+|++.|.++ +|||||++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999998877677889999999999999999999999999999999999999988 7999999984
No 68
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.96 E-value=1.4e-29 Score=220.01 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~ 96 (437)
|++++.|+++||+++||+||+.+.+|++++. .+|++| .+|||+++++||++| |.+|++++|+.++|+| |++++|+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~-~~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIE-KDFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHH-hCCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 6899999999999999999999999999995 459999 999999999999888 9999999999998877 9999999
Q ss_pred Hhh-hCCCcEEEEecCCCc------cCCCCCCCCCc--chhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeE
Q 013746 97 NGM-INTWPIVMISGSCDQ------KDFGRGDFQEL--DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (437)
Q Consensus 97 ~A~-~~~~Pvl~I~g~~~~------~~~~~~~~q~~--d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~ 167 (437)
+|+ .+++|||+|+|++.. ...+.+.+++. ++.++ +++++++++++ ..+++|++.|.++| |||+
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~ 149 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA 149 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence 999 999999999988877 44444554443 44333 58999999999 99999999999998 9999
Q ss_pred EEcCcchh
Q 013746 168 LDLPTDVL 175 (437)
Q Consensus 168 l~iP~dv~ 175 (437)
|-++.+++
T Consensus 150 il~~~~~~ 157 (157)
T TIGR03845 150 ALLDPKYW 157 (157)
T ss_pred EEEeCCcC
Confidence 99998764
No 69
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.93 E-value=1.3e-24 Score=213.18 Aligned_cols=88 Identities=24% Similarity=0.286 Sum_probs=77.5
Q ss_pred CCCEEEecCCCChHHHHHHHHh--CCCcEeeccchHHHHHHHHHHHhHhCCcEEE-EEcCChh-hHhhHHHHHHhhhCCC
Q 013746 28 GATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGIL-LTVSGPG-CVHGLAGLSNGMINTW 103 (437)
Q Consensus 28 Gv~~vFg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~-~~t~GpG-~~n~~~gi~~A~~~~~ 103 (437)
||++++|+|.+...+|++.+.+ +.+++|.+.+|..|+.+|.||+..|||.+++ +-.||.| +.|.++.|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999873 3799999999999999999999997765554 5789998 8888888888899999
Q ss_pred cEEEEecCCCcc
Q 013746 104 PIVMISGSCDQK 115 (437)
Q Consensus 104 Pvl~I~g~~~~~ 115 (437)
|+|+|.|.+...
T Consensus 81 P~l~~i~~RG~~ 92 (361)
T TIGR03297 81 PLLLIVGWRGEP 92 (361)
T ss_pred CeeEEEecCCCC
Confidence 999999988654
No 70
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.91 E-value=9.3e-23 Score=214.47 Aligned_cols=393 Identities=16% Similarity=0.089 Sum_probs=219.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
..|+|.++++..+.+.|++.+.|+||++..++.+.|.+ .++.++...+|.+|..||.|-+.+..| ++..|+|||
T Consensus 3 ~~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~r--a~t~ts~~G 80 (595)
T TIGR03336 3 ELLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLR--AFCTMKHVG 80 (595)
T ss_pred eeecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcc--eEEEccCCc
Confidence 35899999999999999999999999999999998753 368899999999999999999988777 667799999
Q ss_pred hHhhHHHHHHhh--hCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccce-eeecCCcCchHHHHHHHHHHhhcCCCc
Q 013746 88 CVHGLAGLSNGM--INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSGRPG 164 (437)
Q Consensus 88 ~~n~~~gi~~A~--~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~~G 164 (437)
+.-+.-.|..+. .-+.|++++.++.+....-+...++.. +.+ .+.| .....+++++.+...+||+.|..-+ -
T Consensus 81 l~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~~~~q~d~~---~~~-~~~~~vl~p~~~qE~~d~~~~Af~lae~~~-~ 155 (595)
T TIGR03336 81 LNVAADPLMTLAYTGVKGGLVVVVADDPSMHSSQNEQDTRH---YAK-FAKIPCLEPSTPQEAKDMVKYAFELSEKFG-L 155 (595)
T ss_pred hhhhHHHhhhhhhhcCcCceEEEEccCCCCccchhhHhHHH---HHH-hcCCeEECCCCHHHHHHHHHHHHHHHHHHC-C
Confidence 865555554444 347889999998765442222222211 112 2233 3344566788888999999998755 6
Q ss_pred eeEEEcCcchhccc--cchhHHHHHHHHhhhhccccc--CCCCC-----H----HHHHHHHHHHHhCCCc--------EE
Q 013746 165 GCYLDLPTDVLHQT--ISVSEAEKLLKEAESAKETVT--QGGIV-----N----SDIDKAVSLLKEAKKP--------LI 223 (437)
Q Consensus 165 Pv~l~iP~dv~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~----~~~~~~~~~l~~a~rP--------vi 223 (437)
||.+..-..+-+.. ++.......+...+. ...+. ...+. . +.++++.+...+.+-. +.
T Consensus 156 PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 234 (595)
T TIGR03336 156 PVILRPTTRISHMRGDVELGEIPKEEVVKGF-EKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIG 234 (595)
T ss_pred CEEEEEeeeeccceeeEecCCCcccccccCC-CCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEE
Confidence 89887765443222 111000000000000 00000 00000 1 1122222222221111 44
Q ss_pred EEcCCcCccchHHHHHHHHHHhCCC--eeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCC-----------
Q 013746 224 VFGKGAAYARAEGELKKLVESTGIP--FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNW----------- 290 (437)
Q Consensus 224 l~G~g~~~~~~~~~l~~lae~~g~p--v~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~----------- 290 (437)
++..|.. ....++.++++|+. |+.- +-+ .|+--- ...+.+++.+.||++-.....
T Consensus 235 iv~~G~~----~~~a~ea~~~~Gi~~~v~~~---~~i----~Pld~~-~i~~~~~~~~~vivvEe~~~~~~~~~~~~~~~ 302 (595)
T TIGR03336 235 VIASGIA----YNYVKEALERLGVDVSVLKI---GFT----YPVPEG-LVEEFLSGVEEVLVVEELEPVVEEQVKALAGT 302 (595)
T ss_pred EEEcCHH----HHHHHHHHHHcCCCeEEEEe---CCC----CCCCHH-HHHHHHhcCCeEEEEeCCccHHHHHHHHHHHh
Confidence 4544432 22333344444542 2211 011 121110 123445566666666432210
Q ss_pred ----ccccCCCCCCCCCceEEEhHhHHhhhhhh-HHHHHHHHh-----ccCCCC------CcccHHHHHHHHHhccCCCC
Q 013746 291 ----LLHFGEPPKWSKDVKFVLVDAIWKKTKDN-VLKMEVQLA-----KDVVPF------NFMTPMRIIRDAILGVGSPA 354 (437)
Q Consensus 291 ----~~~~~~~~~~~~~~~~i~vd~l~~~~~~~-~~~~~~~~~-----~~~~~~------~~~~~~~~i~~~l~~~~~~~ 354 (437)
....|.+..|.+...-+-.+.+.+.+.+. ......... ....|- ....+++.|++.+ ++|
T Consensus 303 ~~~~v~~~G~~d~fi~~~~~Ld~~~i~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~C~GCp~~~~~~~l~~~l----~~d 378 (595)
T TIGR03336 303 AGLNIKVHGKEDGFLPREGELNPDIVVNALAKFGLAPSVTHEKPVPKPLPVRPPSLCAGCPHRATFYAMKKVA----DRE 378 (595)
T ss_pred cCCCeEEecccCCccCcccCcCHHHHHHHHHHhCCCcccccccccccccCCCCCCCCCCCCChHHHHHHHHhc----cCC
Confidence 00011111111100001112333332210 000000000 000010 0122455555555 889
Q ss_pred CEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCC-HHHHHHHHHcCc
Q 013746 355 PILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS-AVEVEVWLSCII 432 (437)
Q Consensus 355 ~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~-~~eL~Ta~r~~l 432 (437)
.+++.| |.+..|. ..|..++.+ +++||+++|+|+|+++++|+++||+++|||+|+|+ +|||+|++++++
T Consensus 379 ~ivv~D~G~~~~~~-------~~p~~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~ 449 (595)
T TIGR03336 379 AIFPSDIGCYTLGI-------QPPLGTVDT--TLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKA 449 (595)
T ss_pred cEEecCcchhhccc-------cCCccccce--eeccCchHHHHhhhhhcCCCCCEEEEeccchhhhcCHHHHHHHHHcCC
Confidence 999888 5443332 134455543 58999999999999999999999999999999998 899999999999
Q ss_pred ccccC
Q 013746 433 MISSI 437 (437)
Q Consensus 433 ~i~~i 437 (437)
|+++|
T Consensus 450 ~i~~v 454 (595)
T TIGR03336 450 NITVV 454 (595)
T ss_pred CeEEE
Confidence 99865
No 71
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.89 E-value=3.9e-23 Score=188.59 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=87.7
Q ss_pred CCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEE
Q 013746 332 VPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA 410 (437)
Q Consensus 332 ~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~ 410 (437)
.++++.++++.|++.+ |++++++.| |.+..|..+ +++..+|++++.++++|+|||++|+|||+++++|+|+|||
T Consensus 6 ~~l~~~~~~~~l~~~l----~~d~iiv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~ 80 (202)
T cd02006 6 VPIKPQRVYEEMNKAF----GRDVRYVTTIGLSQIAGAQ-MLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVA 80 (202)
T ss_pred CCcCHHHHHHHHHhhC----CCCeEEEECCcHHHHHHHH-hcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEE
Confidence 4566666777776666 899999988 555666655 4688899999999999999999999999999999999999
Q ss_pred EEcCccccCCHHHHHHHHHcCcccccC
Q 013746 411 VEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 411 i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|+|||||+|++|||+|++||++|++.|
T Consensus 81 i~GDG~f~m~~~eL~Ta~~~~lpviiv 107 (202)
T cd02006 81 LSGDYDFQFMIEELAVGAQHRIPYIHV 107 (202)
T ss_pred EEeChHhhccHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999999764
No 72
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.87 E-value=1.7e-22 Score=183.32 Aligned_cols=100 Identities=24% Similarity=0.391 Sum_probs=86.3
Q ss_pred CCCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEE
Q 013746 333 PFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 411 (437)
Q Consensus 333 ~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i 411 (437)
++++.++++.|++.+ +++++++.| |.+..|..+ +++..+|++++.++++|+|||++|+|||+++++|+|+|||+
T Consensus 3 ~l~~~~~~~~l~~~l----~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i 77 (196)
T cd02013 3 PMHPRQVLRELEKAM----PEDAIVSTDIGNICSVANS-YLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAI 77 (196)
T ss_pred CCCHHHHHHHHHHHC----CCCEEEEECCcHHHHHHHH-hcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE
Confidence 455666666666665 888999988 555666554 56888999999999999999999999999999999999999
Q ss_pred EcCccccCCHHHHHHHHHcCcccccC
Q 013746 412 EGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 412 ~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|||||+|++|||+|++||++|++.|
T Consensus 78 ~GDG~f~m~~~eL~Ta~~~~lpvi~v 103 (196)
T cd02013 78 AGDGAWGMSMMEIMTAVRHKLPVTAV 103 (196)
T ss_pred EcchHHhccHHHHHHHHHhCCCeEEE
Confidence 99999999999999999999999864
No 73
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.85 E-value=1.2e-21 Score=167.68 Aligned_cols=104 Identities=41% Similarity=0.709 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCE
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDV 280 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDl 280 (437)
+++++++|++|+||+|++|.+++++++.+++++|+|++|+||++|+++||.||++||+|+|. ...+++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 57899999999999999999999999999999999999999999999999999999999882 45678999999
Q ss_pred EEEEcCcCCCccccCCCCCCCCCceEEEhHh
Q 013746 281 ALVVGARLNWLLHFGEPPKWSKDVKFVLVDA 311 (437)
Q Consensus 281 vl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~ 311 (437)
||++|++++++.++++...+.++.++||||.
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~ 111 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDP 111 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEES
T ss_pred EEEECCCCccccccccccccCCCCEEEEEEC
Confidence 9999999998777775455666669999983
No 74
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.85 E-value=2.6e-21 Score=174.36 Aligned_cols=97 Identities=23% Similarity=0.398 Sum_probs=83.0
Q ss_pred cccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcC
Q 013746 336 FMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414 (437)
Q Consensus 336 ~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GD 414 (437)
+..+++.|++.+ ++|++++.| |.+..|..+ +++..+|++++.++++|+|||++|+|||++++.|+|+||+++||
T Consensus 3 ~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GD 77 (186)
T cd02015 3 PQEVIKELSELT----PGDAIVTTDVGQHQMWAAQ-YYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGD 77 (186)
T ss_pred HHHHHHHHHhhC----CCCeEEEeCCcHHHHHHHH-hcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcc
Confidence 344566666555 889999888 455556554 56888899999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHcCcccccC
Q 013746 415 SGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 415 G~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|+|+|++|||+|++||++|++.|
T Consensus 78 G~f~~~~~eL~ta~~~~lpi~iv 100 (186)
T cd02015 78 GSFQMNIQELATAAQYNLPVKIV 100 (186)
T ss_pred cHHhccHHHHHHHHHhCCCeEEE
Confidence 99999999999999999998764
No 75
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.84 E-value=3.6e-21 Score=171.73 Aligned_cols=94 Identities=29% Similarity=0.394 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 339 PMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 339 ~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
+++.+++.+ +++++++.| |.+..|..+ +++..+|++++.++++|+|||++|+|||+++++|+++||+|+|||||
T Consensus 4 ~~~~l~~~l----~~~~ii~~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 78 (177)
T cd02010 4 IVHDLRAVM----GDDDIVLLDVGAHKIWMAR-YYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGF 78 (177)
T ss_pred HHHHHHHHC----CCCcEEEecCcHHHHHHHH-hCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHH
Confidence 445555555 889999888 666666654 56888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcccccC
Q 013746 418 GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 418 ~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|++|||+|++||++|++.|
T Consensus 79 ~m~~~eL~ta~~~~l~vi~v 98 (177)
T cd02010 79 MMNSQELETAVRLKIPLVVL 98 (177)
T ss_pred HhHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999865
No 76
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.83 E-value=6.7e-21 Score=174.15 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 339 PMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 339 ~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
+++.|++.+ +++++++.| |.+..|..+ +++..+|++++.++++|+|||++|+|||+|+++|+++||+++|||||
T Consensus 4 ~~~~l~~~l----~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf 78 (205)
T cd02003 4 VLGALNEAI----GDDDVVINAAGSLPGDLHK-LWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSY 78 (205)
T ss_pred HHHHHHHhC----CCCCEEEECCCcchHHHHH-hCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchh
Confidence 455565555 899999888 667777665 46888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcccccC
Q 013746 418 GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 418 ~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|++|||+|++||++|++.|
T Consensus 79 ~m~~~eL~Ta~~~~lpv~iv 98 (205)
T cd02003 79 LMLHSEIVTAVQEGLKIIIV 98 (205)
T ss_pred hccHHHHHHHHHcCCCCEEE
Confidence 99999999999999999764
No 77
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.83 E-value=1.1e-20 Score=169.45 Aligned_cols=100 Identities=20% Similarity=0.319 Sum_probs=85.5
Q ss_pred CCCcccHHHHHHHHHhccCCCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEE
Q 013746 333 PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE 412 (437)
Q Consensus 333 ~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~ 412 (437)
|+++..+++.|++.+ +++++++.|.++..|.. .+++..+|++++.++++|+||+++|+|+|++++.|+++|++++
T Consensus 1 ~l~~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~ 75 (183)
T cd02005 1 PLTQARLWQQVQNFL----KPNDILVAETGTSWFGA-LDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLV 75 (183)
T ss_pred CCCHHHHHHHHHHhc----CCCCEEEECCchHHHhh-hhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEE
Confidence 355566677777666 89999999854445554 4557788899999999999999999999999999999999999
Q ss_pred cCccccCCHHHHHHHHHcCcccccC
Q 013746 413 GDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 413 GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|||+|+|+++||+|++||++|+++|
T Consensus 76 GDG~f~~~~~el~ta~~~~~p~~iv 100 (183)
T cd02005 76 GDGSFQMTVQELSTMIRYGLNPIIF 100 (183)
T ss_pred CCchhhccHHHHHHHHHhCCCCEEE
Confidence 9999999999999999999998865
No 78
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.82 E-value=2.4e-20 Score=165.97 Aligned_cols=95 Identities=43% Similarity=0.692 Sum_probs=82.1
Q ss_pred cHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCcc
Q 013746 338 TPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 416 (437)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~ 416 (437)
++++.|++.+ |++++++.| |.+..|.. .+++...|++++.++++|+||+++|+|||++++.|+|+|++++|||+
T Consensus 3 ~~~~~l~~~l----~~~~iiv~d~g~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~ 77 (172)
T cd02004 3 RVLHELQEAL----PDDAIIVSDGGNTMDWAR-YILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGA 77 (172)
T ss_pred HHHHHHHHHC----CCCcEEEEcCchHHHHHH-HHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchh
Confidence 3455565555 889999888 55555554 45688899999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHcCcccccC
Q 013746 417 FGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 417 f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|+|++|||+|++|+++|++.|
T Consensus 78 f~~~~~el~ta~~~~lpv~iv 98 (172)
T cd02004 78 FGFSGMELETAVRYNLPIVVV 98 (172)
T ss_pred hcCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999998754
No 79
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.82 E-value=1.1e-20 Score=168.41 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccCCCCCEEEeCcchHHHHHHHhhhh-cCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 339 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 339 ~~~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
+++.|++.+ |++.+++.|+++...+...+++. ..|++++.+.++++|||++|++||++++. +|+||+++|||||
T Consensus 6 ~~~~l~~~l----~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGsf 80 (175)
T cd02009 6 LARALPDHL----PEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLSF 80 (175)
T ss_pred HHHHHHHhC----CCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHHH
Confidence 455555555 99999998855544444556787 88999999999999999999999999998 9999999999999
Q ss_pred cCCHHHHHHHHHcCcccccC
Q 013746 418 GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 418 ~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|++|||+|++||++|+++|
T Consensus 81 ~m~~~eL~ta~~~~l~v~iv 100 (175)
T cd02009 81 LHDLNGLLLGKQEPLNLTIV 100 (175)
T ss_pred HHhHHHHHhccccCCCeEEE
Confidence 99999999999999999764
No 80
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.80 E-value=7.9e-20 Score=163.46 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=84.3
Q ss_pred CCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEE
Q 013746 334 FNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE 412 (437)
Q Consensus 334 ~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~ 412 (437)
+++..+++.|++.+ +++++++.| |.+..+..+ +++..+|++++.++++|+|||++|+|+|+++++|+++||+++
T Consensus 2 ~~~~~~~~~l~~~~----~~~~ii~~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~ 76 (178)
T cd02014 2 IHPERVAAELNKRA----PDDAIFTIDVGNVTVWAAR-HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALS 76 (178)
T ss_pred CCHHHHHHHHHhHC----CCCeEEEEcCcHHHHHHHH-hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 34445566666555 889999888 556655554 568888999999999999999999999999999999999999
Q ss_pred cCccccCCHHHHHHHHHcCcccccC
Q 013746 413 GDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 413 GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|||||+|+.|||+|++++++|++.|
T Consensus 77 GDG~f~~~~~el~t~~~~~lp~~~i 101 (178)
T cd02014 77 GDGGFAMLMGDLITAVKYNLPVIVV 101 (178)
T ss_pred cchHHHhhHHHHHHHHHhCCCcEEE
Confidence 9999999999999999999998764
No 81
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.78 E-value=2.9e-19 Score=159.94 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=80.7
Q ss_pred ccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCc
Q 013746 337 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 415 (437)
Q Consensus 337 ~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG 415 (437)
.++++.|++.+ |++++++.| |.+..|.. .+++..+|++++.+++ |+||+++|+|||++++.|+++|++++|||
T Consensus 4 ~~~~~~l~~~l----~~~~~iv~d~g~~~~~~~-~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG 77 (178)
T cd02002 4 EYLAAALAAAL----PEDAIIVDEAVTNGLPLR-DQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG 77 (178)
T ss_pred HHHHHHHHhhC----CCCeEEEecCCcccHHHH-HhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc
Confidence 34555555555 889989888 55555554 4567778899999888 99999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHcCcccccC
Q 013746 416 GFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 416 ~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|+|+.+||+|++++++|++.|
T Consensus 78 ~f~~~~~el~ta~~~~~p~~~i 99 (178)
T cd02002 78 SFMYTIQALWTAARYGLPVTVV 99 (178)
T ss_pred hhhccHHHHHHHHHhCCCeEEE
Confidence 9999999999999999999764
No 82
>PRK06163 hypothetical protein; Provisional
Probab=99.74 E-value=2.8e-18 Score=155.38 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=72.3
Q ss_pred CCCcccHHHHHHHHHhccCCCCCEEEeCcc---hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEE
Q 013746 333 PFNFMTPMRIIRDAILGVGSPAPILVSEGA---NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVV 409 (437)
Q Consensus 333 ~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~---~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv 409 (437)
.++..++++.|.+.+ +++++++.|.+ +..|..+ ..+++++ .+|+|||++|+|||+++++|+++||
T Consensus 12 ~~~~~~~i~~l~~~l----~~~~~iv~D~G~~~~~~~~~~-----~~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv 79 (202)
T PRK06163 12 VMNRFDLTCRLVAKL----KDEEAVIGGIGNTNFDLWAAG-----QRPQNFY---MLGSMGLAFPIALGVALAQPKRRVI 79 (202)
T ss_pred CcCHHHHHHHHHHhc----CCCCEEEECCCccHHHHHHhh-----cCCCCeE---eecccccHHHHHHHHHHhCCCCeEE
Confidence 344455566665555 88888888844 3344332 2555565 3899999999999999999999999
Q ss_pred EEEcCccccCCHHHHHHHHHc-CcccccC
Q 013746 410 AVEGDSGFGFSAVEVEVWLSC-IIMISSI 437 (437)
Q Consensus 410 ~i~GDG~f~~~~~eL~Ta~r~-~l~i~~i 437 (437)
+++|||||+|++|||+|++|| ++|++.|
T Consensus 80 ~i~GDG~f~m~~~eL~Ta~~~~~lpi~iv 108 (202)
T PRK06163 80 ALEGDGSLLMQLGALGTIAALAPKNLTII 108 (202)
T ss_pred EEEcchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 999999999999999999987 6888764
No 83
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.72 E-value=3.8e-18 Score=148.87 Aligned_cols=76 Identities=34% Similarity=0.465 Sum_probs=69.6
Q ss_pred cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.+..|..++ ++..+|++++.+.++++||+++|+|||+++++|+|+||+++|||+|+|+++||+|++||++|+++|
T Consensus 3 G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~v 78 (153)
T PF02775_consen 3 GCHTMWAAQY-LRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIV 78 (153)
T ss_dssp SHHHHHHHHH-SCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEE
T ss_pred ChhHHHHHHh-cCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEE
Confidence 6677777664 688899999999999999999999999999999999999999999999999999999999999865
No 84
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.70 E-value=2.5e-17 Score=143.88 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=65.4
Q ss_pred CCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHc-
Q 013746 353 PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC- 430 (437)
Q Consensus 353 ~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~- 430 (437)
+|++++.| |.+..++ +.....|++|+. +|+||+++|+|||++++.| ++||+++|||||+|+++||+|++||
T Consensus 13 ~d~~vv~d~G~~~~~~---~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m~~~el~t~~~~~ 85 (157)
T cd02001 13 GDTPIVSTTGYASREL---YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLMNPGVLLTAGEFT 85 (157)
T ss_pred CCCEEEeCCCHhHHHH---HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHhcccHHHHHHHhc
Confidence 57888888 5444443 234467788875 8999999999999999987 9999999999999999999999999
Q ss_pred CcccccC
Q 013746 431 IIMISSI 437 (437)
Q Consensus 431 ~l~i~~i 437 (437)
++|+++|
T Consensus 86 ~~~i~~v 92 (157)
T cd02001 86 PLNLILV 92 (157)
T ss_pred CCCEEEE
Confidence 5998764
No 85
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.68 E-value=1.1e-16 Score=141.75 Aligned_cols=94 Identities=28% Similarity=0.417 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCCCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccC
Q 013746 340 MRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGF 419 (437)
Q Consensus 340 ~~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~ 419 (437)
++.|.+.+ +++++++.|.++...+...++...++..+..+.++|+||+++|+|+|++++.|+++|++++|||+|+|
T Consensus 3 ~~~l~~~~----~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~ 78 (168)
T cd00568 3 LAALRAAL----PEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMM 78 (168)
T ss_pred HHHHHHHC----CCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhc
Confidence 44555554 88898888854433333445566677888888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCcccccC
Q 013746 420 SAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 420 ~~~eL~Ta~r~~l~i~~i 437 (437)
+++||+|++++++|++.|
T Consensus 79 ~~~~l~ta~~~~~~~~~i 96 (168)
T cd00568 79 TGQELATAVRYGLPVIVV 96 (168)
T ss_pred cHHHHHHHHHcCCCcEEE
Confidence 999999999999999865
No 86
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.67 E-value=8e-17 Score=143.87 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCCCCCEEEeCcchHHHHHHHhhhh-cCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 339 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 339 ~~~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
+++.|++.+ | +++++.|.+.... .++.. ..|++++. +|+||+++|+|||+|+++ +++||+++|||||
T Consensus 4 ~~~~l~~~l----~-d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f 71 (181)
T TIGR03846 4 AIRAIASYL----E-DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSL 71 (181)
T ss_pred HHHHHHHhC----C-CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHH
Confidence 344455444 7 8899888443221 22333 46777764 899999999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHcC-cccccC
Q 013746 418 GFSAVEVEVWLSCI-IMISSI 437 (437)
Q Consensus 418 ~~~~~eL~Ta~r~~-l~i~~i 437 (437)
+|++|||+|++||+ +|++.|
T Consensus 72 ~m~~~el~ta~~~~~~pv~~v 92 (181)
T TIGR03846 72 LMNLGVLPTIAAESPKNLILV 92 (181)
T ss_pred HhhhhHHHHHHHhCCCCeEEE
Confidence 99999999999999 498764
No 87
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.67 E-value=1.1e-16 Score=143.91 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=68.1
Q ss_pred HHHHHHHHhccCCCCCEEEeCcchHHHHHHHhhhhc------CCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEc
Q 013746 340 MRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG 413 (437)
Q Consensus 340 ~~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~~------~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G 413 (437)
++.|.+.+ |+|++++.|.+... ..+++.. +|.+++.+ |+|||++|+|||++++.|+++||+++|
T Consensus 5 ~~~l~~~l----~~d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~p~~~Vv~i~G 74 (188)
T cd03371 5 IEIVLSRA----PATAAVVSTTGMTS---RELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALARPDRKVVCIDG 74 (188)
T ss_pred HHHHHhhc----CCCCEEEECCCcch---HHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHhCCCCcEEEEeC
Confidence 34444444 99999988844322 1233443 34667654 899999999999999999999999999
Q ss_pred CccccCCHHHHHHHHHcCc-ccccC
Q 013746 414 DSGFGFSAVEVEVWLSCII-MISSI 437 (437)
Q Consensus 414 DG~f~~~~~eL~Ta~r~~l-~i~~i 437 (437)
||+|+|++|||+|++||++ |+++|
T Consensus 75 DG~f~m~~~eL~ta~~~~l~~i~iv 99 (188)
T cd03371 75 DGAALMHMGGLATIGGLAPANLIHI 99 (188)
T ss_pred CcHHHhhccHHHHHHHcCCCCcEEE
Confidence 9999999999999999997 56543
No 88
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.67 E-value=6.3e-17 Score=144.65 Aligned_cols=87 Identities=28% Similarity=0.327 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCcc
Q 013746 338 TPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 416 (437)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~ 416 (437)
.+++.|++.+ +++++++.| |.+..|.. .|.+++. ++|+|||++|+|+|+++++|+++||+++|||+
T Consensus 14 ~~~~~l~~~l----~~~~iv~~D~G~~~~~~~-------~~~~~~~--~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG~ 80 (178)
T cd02008 14 PSFYALRKAF----KKDSIVSGDIGCYTLGAL-------PPLNAID--TCTCMGASIGVAIGMAKASEDKKVVAVIGDST 80 (178)
T ss_pred HHHHHHHHHh----cCCeEEecCcCccccccc-------CChhhcc--ccccCccHHHHHhhHHhhCCCCCEEEEecChH
Confidence 3466666666 889999998 55444432 2333332 58999999999999999999999999999999
Q ss_pred ccCC-HHHHHHHHHcCcccccC
Q 013746 417 FGFS-AVEVEVWLSCIIMISSI 437 (437)
Q Consensus 417 f~~~-~~eL~Ta~r~~l~i~~i 437 (437)
|+|+ ++||+|++||++|+++|
T Consensus 81 f~~~g~~eL~ta~~~~l~i~vv 102 (178)
T cd02008 81 FFHSGILGLINAVYNKANITVV 102 (178)
T ss_pred HhhccHHHHHHHHHcCCCEEEE
Confidence 9999 69999999999999865
No 89
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.65 E-value=2e-16 Score=143.01 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHHHHHHHhcc--CCCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCcc-
Q 013746 340 MRIIRDAILGV--GSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG- 416 (437)
Q Consensus 340 ~~~i~~~l~~~--~~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~- 416 (437)
++.+.+.+.++ .|+|.+++.|.+...|..+ +++. +..+++|||++|+|||+++++|+|+||+++||||
T Consensus 11 ~~~~~~~~~~~~~~~~d~ii~~D~G~~~~~~~-~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~ 81 (193)
T cd03375 11 LKALAKALAELGIDPEKVVVVSGIGCSSRLPY-YFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDL 81 (193)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCChhceehh-hccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchH
Confidence 45555555442 2667888888444344322 2221 2235899999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHcCcccccC
Q 013746 417 FGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 417 f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|+|++|||+|++||++|++.|
T Consensus 82 f~m~~~eL~ta~~~~lpv~ii 102 (193)
T cd03375 82 AAIGGNHFIHAARRNIDITVI 102 (193)
T ss_pred hhccHHHHHHHHHhCCCeEEE
Confidence 689999999999999999864
No 90
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.60 E-value=1.8e-15 Score=135.12 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=65.7
Q ss_pred HHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCcccc
Q 013746 340 MRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG 418 (437)
Q Consensus 340 ~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~ 418 (437)
.+.|.+.+ | +++++.| |.+..+. ..+ ...+.+++. +|+||+++|+|+|++++.| ++||+++|||+|+
T Consensus 5 ~~~l~~~~----~-~~~vv~d~G~~~~~~-~~~--~~~~~~~~~---~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~ 72 (179)
T cd03372 5 IKTLIADL----K-DELVVSNIGFPSKEL-YAA--GDRPLNFYM---LGSMGLASSIGLGLALAQP-RKVIVIDGDGSLL 72 (179)
T ss_pred HHHHHHhC----C-CCeEEeCCCHhHHHH-HHc--cCccccccc---ccchhhHHHHHHHHHhcCC-CcEEEEECCcHHH
Confidence 44454444 8 8999888 5444332 111 234566652 7999999999999999998 9999999999999
Q ss_pred CCHHHHHHHHHcCc-cccc
Q 013746 419 FSAVEVEVWLSCII-MISS 436 (437)
Q Consensus 419 ~~~~eL~Ta~r~~l-~i~~ 436 (437)
|++|||+|++|+++ |+++
T Consensus 73 m~~~el~ta~~~~~~~l~v 91 (179)
T cd03372 73 MNLGALATIAAEKPKNLII 91 (179)
T ss_pred hCHHHHHHHHHcCCCCEEE
Confidence 99999999999995 5654
No 91
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.59 E-value=3.5e-16 Score=145.39 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=71.7
Q ss_pred cHHHHHHHHHhccCCCCCEEEeCcc-hHHHHH---HHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEc
Q 013746 338 TPMRIIRDAILGVGSPAPILVSEGA-NTMDVG---RAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG 413 (437)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~i~v~~g~-~~~~~~---~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~G 413 (437)
.+++.|++.+ |+|.+++.|++ +..|.. ..+++...+.+++.+ .++||||+|+|||+++++|+|+||+++|
T Consensus 15 ~~~~~l~~~l----p~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~GlpaAiGa~~a~p~r~VV~i~G 88 (235)
T cd03376 15 LALRHVLKAL----GPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFEN--AAAVASGIEAALKALGRGKDITVVAFAG 88 (235)
T ss_pred HHHHHHHHHh----hcCeEEEeCCCcccccCCcCCCccccccceehhhcC--HHHHHHHHHHHHHHhccCCCCeEEEEEc
Confidence 3456666666 89999999954 433221 111233444454443 3799999999999999999999999999
Q ss_pred Ccc-ccCCHHHHHHHHHcCcccccC
Q 013746 414 DSG-FGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 414 DG~-f~~~~~eL~Ta~r~~l~i~~i 437 (437)
||+ |+|++|||+|++|+++|++.|
T Consensus 89 DG~~~~m~~~eL~ta~~~~~pv~~v 113 (235)
T cd03376 89 DGGTADIGFQALSGAAERGHDILYI 113 (235)
T ss_pred CchHHhhHHHHHHHHHHcCCCeEEE
Confidence 999 589999999999999999865
No 92
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.57 E-value=1.2e-15 Score=142.12 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=75.1
Q ss_pred HHHHHHHHHhccCC--CCCEEEeC-cchHHHHHHHhhhhcCCCeeecCC--CCCCCcchHHHHHHHhHh-----CCCCcE
Q 013746 339 PMRIIRDAILGVGS--PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAG--TWGTMGVGLGYCIAAAIA-----CPERLV 408 (437)
Q Consensus 339 ~~~~i~~~l~~~~~--~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~g~mG~~lpaAiGaala-----~p~~~v 408 (437)
.++.|.+.+ + ++.+++.| |.+..|..+ ++....+..++.+. +.|+||||+|+||||+++ .|+|+|
T Consensus 16 ~~~~l~~~l----~~p~d~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~V 90 (237)
T cd02018 16 AVRVVLAAL----PAPEDTVIANSTGCSSVYAST-APFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDV 90 (237)
T ss_pred HHHHHHHHh----CCCCCEEEEeCCCccceeccc-CcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcE
Confidence 456666666 7 88899999 666666654 32333444555543 459999999999999999 999999
Q ss_pred EEEEcCcccc-CCHHHHHHHHHcCcccccC
Q 013746 409 VAVEGDSGFG-FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 409 v~i~GDG~f~-~~~~eL~Ta~r~~l~i~~i 437 (437)
|+++|||+|+ |++|||+|++++++|++.|
T Consensus 91 v~i~GDG~~~~~g~~~l~ta~~~~l~i~iv 120 (237)
T cd02018 91 VVIGGDGATYDIGFGALSHSLFRGEDITVI 120 (237)
T ss_pred EEEeCchHHHhccHHHHHHHHHcCCCeEEE
Confidence 9999999997 8999999999999998764
No 93
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.54 E-value=7.9e-15 Score=139.65 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=70.0
Q ss_pred cHHHHHHHHHhccC--CCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCC-CCCcchHHHHHHHhHhCCCCcEEEEEc
Q 013746 338 TPMRIIRDAILGVG--SPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEG 413 (437)
Q Consensus 338 ~~~~~i~~~l~~~~--~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaAiGaala~p~~~vv~i~G 413 (437)
.+++.|++.+.++- |++.+++.| |.+.. + . .++.+.++ ++||+++|+|+|+|+++|+++||+++|
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~-~-----~-----~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~G 95 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGR-L-----P-----GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTG 95 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccc-c-----C-----ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeC
Confidence 35666777664432 567788888 44432 1 1 24445555 999999999999999999999999999
Q ss_pred Ccc-ccCCHHHHHHHHHcCcccccC
Q 013746 414 DSG-FGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 414 DG~-f~~~~~eL~Ta~r~~l~i~~i 437 (437)
||+ |+|+++||+|++|+|+|+++|
T Consensus 96 DG~~f~mg~~eL~tA~r~nl~i~vI 120 (286)
T PRK11867 96 DGDALAIGGNHFIHALRRNIDITYI 120 (286)
T ss_pred ccHHHhCCHHHHHHHHHhCCCcEEE
Confidence 995 999999999999999999865
No 94
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.53 E-value=1.9e-14 Score=136.31 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=66.7
Q ss_pred HHHHHHHHhc--cCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCC-CCCcchHHHHHHHhHhCCCCcEEEEEcCc
Q 013746 340 MRIIRDAILG--VGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEGDS 415 (437)
Q Consensus 340 ~~~i~~~l~~--~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaAiGaala~p~~~vv~i~GDG 415 (437)
++.|.+++.+ +.|+|.+++.| |.+. ..+ +++.+.++ +.||+++|+|+|+|+++|+++||+++|||
T Consensus 13 ~~~~~~a~~~l~~~p~d~iivsdiGc~~----------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG 81 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVVSGIGCSA----------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDG 81 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCccc----------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCch
Confidence 3444444433 23667788888 4432 123 45555555 56899999999999999999999999999
Q ss_pred ccc-CCHHHHHHHHHcCcccccC
Q 013746 416 GFG-FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 416 ~f~-~~~~eL~Ta~r~~l~i~~i 437 (437)
+|+ |+++||+||+|+|+||+.|
T Consensus 82 ~f~~mg~~eL~tA~r~nl~I~vI 104 (287)
T TIGR02177 82 DLYGIGGNHFVAAGRRNVDITVI 104 (287)
T ss_pred HHHhccHHHHHHHHHhCcCeEEE
Confidence 986 9999999999999999875
No 95
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.51 E-value=2.9e-14 Score=136.35 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred HHHHHHHHhcc--CCCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 340 MRIIRDAILGV--GSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 340 ~~~i~~~l~~~--~~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
.+.+.+.+.++ .|++.+++.|.+...+... ++. .++.+++||+++|+|+|+|+|+|+++||+++|||+|
T Consensus 30 ~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~-yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~~ 100 (301)
T PRK05778 30 LNAIIQALAELGLDPDKVVVVSGIGCSSKIPG-YFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGDL 100 (301)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhh-hcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccHH
Confidence 44444455443 3677788888444333332 212 123348999999999999999999999999999997
Q ss_pred -cCCHHHHHHHHHcCcccccC
Q 013746 418 -GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 418 -~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|++|||+|++|+|+|++.|
T Consensus 101 ~~mg~~eL~tA~r~nl~i~vI 121 (301)
T PRK05778 101 ASIGGGHFIHAGRRNIDITVI 121 (301)
T ss_pred HhccHHHHHHHHHHCCCcEEE
Confidence 59999999999999999875
No 96
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.49 E-value=6.2e-14 Score=132.43 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHHHHHhc--cCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCc
Q 013746 339 PMRIIRDAILG--VGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 415 (437)
Q Consensus 339 ~~~~i~~~l~~--~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG 415 (437)
++..+.+++.+ +.|+|.+++.| |.+.. +.. ++.. .+.++.||+++|+|+|+|+++|+++||+++|||
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~-~~~-~~~~--------~~~~~~mG~alp~AiGaklA~pd~~VVai~GDG 88 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAK-MPH-YINV--------NGFHTLHGRAIPAATAVKATNPELTVIAEGGDG 88 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhh-HHH-HccC--------CCCCcccccHHHHHHHHHHHCCCCcEEEEECch
Confidence 34455555543 34778888888 44433 222 2221 234577999999999999999999999999999
Q ss_pred cccCC-HHHHHHHHHcCcccccC
Q 013746 416 GFGFS-AVEVEVWLSCIIMISSI 437 (437)
Q Consensus 416 ~f~~~-~~eL~Ta~r~~l~i~~i 437 (437)
+|+|. +|||+||+|+|+|++.|
T Consensus 89 ~~~~iG~~eL~tA~r~nl~i~~I 111 (280)
T PRK11869 89 DMYAEGGNHLIHAIRRNPDITVL 111 (280)
T ss_pred HHhhCcHHHHHHHHHhCcCcEEE
Confidence 99976 99999999999999875
No 97
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.45 E-value=1.3e-13 Score=130.44 Aligned_cols=77 Identities=17% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCcccc-CCHHHHHHHHHc
Q 013746 352 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG-FSAVEVEVWLSC 430 (437)
Q Consensus 352 ~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~-~~~~eL~Ta~r~ 430 (437)
+++.+++.|.+....+. ....+.++ .++||+++|+|+|+|+|+|+++||+++|||+|+ |+.+|+.|++|+
T Consensus 42 ~~d~ivvsdiGc~~~~~----~~~~~~~~-----~~~~G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g~~el~ta~r~ 112 (277)
T PRK09628 42 MDDVCVVSGIGCSGRFS----SYVNCNTV-----HTTHGRAVAYATGIKLANPDKHVIVVSGDGDGLAIGGNHTIHGCRR 112 (277)
T ss_pred CCCEEEEeCcCHHHHhh----ccCCCCce-----eeccccHHHHHHHHHHHCCCCeEEEEECchHHHHhhHHHHHHHHHh
Confidence 67778888844332211 21222222 358999999999999999999999999999997 488999999999
Q ss_pred CcccccC
Q 013746 431 IIMISSI 437 (437)
Q Consensus 431 ~l~i~~i 437 (437)
|+|++.|
T Consensus 113 nlpi~iI 119 (277)
T PRK09628 113 NIDLNFI 119 (277)
T ss_pred CcCeEEE
Confidence 9999865
No 98
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.45 E-value=1.8e-13 Score=129.31 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccC--CCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCc
Q 013746 339 PMRIIRDAILGVG--SPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 415 (437)
Q Consensus 339 ~~~~i~~~l~~~~--~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG 415 (437)
++..|++.+..+. +++.+++.+ |.+. +... ++.. ...+++||+++|+|+|+++|+|+++||+++|||
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~-~~~~--------~~~~~~~G~alp~A~GaklA~Pd~~VV~i~GDG 87 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGCSS-NLPE-FLNT--------YGIHGIHGRVLPIATGVKWANPKLTVIGYGGDG 87 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhh-hccC--------CCcccccccHHHHHHHHHHHCCCCcEEEEECCh
Confidence 4566666665442 556688888 4444 4433 2222 223789999999999999999999999999999
Q ss_pred -cccCCHHHHHHHHHcCcccccC
Q 013746 416 -GFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 416 -~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+|+|++|||.|++|+|+|++.|
T Consensus 88 ~~f~ig~~eL~tA~rrn~~i~vI 110 (279)
T PRK11866 88 DGYGIGLGHLPHAARRNVDITYI 110 (279)
T ss_pred HHHHccHHHHHHHHHHCcCcEEE
Confidence 7999999999999999998865
No 99
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.40 E-value=4.7e-13 Score=115.71 Aligned_cols=99 Identities=18% Similarity=0.337 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC------CCCCCCCCCCcccHHH-------Hhch
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG------KGLLPDTHPLAATAAR-------SLAI 275 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g------kg~~~~~hp~~~G~~~-------~~~l 275 (437)
++++++|++|+||+|++|.|+.++++.+++++|+|++|+||++|+.+ ||++ +||.++|..+ .+.+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhhc
Confidence 67889999999999999999998899999999999999999999998 9998 7778887533 3556
Q ss_pred ---hcCCEEEEEcCcCCCcccc-CCCCCCCCCceEEEhH
Q 013746 276 ---GQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVD 310 (437)
Q Consensus 276 ---~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~~~i~vd 310 (437)
.++|+||.+|+++...... .....|. +.+.|.+|
T Consensus 96 ~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 96 DGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred cCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEec
Confidence 7999999999998421110 0112244 66777776
No 100
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.38 E-value=8.9e-13 Score=114.73 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=79.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCc-cchHHHHHHHHHHhCCCeeeCCC------CCCCCCCCCCCcccHHH-------Hhc
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPM------GKGLLPDTHPLAATAAR-------SLA 274 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~-~~~~~~l~~lae~~g~pv~tt~~------gkg~~~~~hp~~~G~~~-------~~~ 274 (437)
++++++|++|+||+|++|.++++ ..+.+++++|+|++++||++|++ +||++|+ |+++|..+ .+.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e~ 102 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWKG 102 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhhh
Confidence 57889999999999999999987 77889999999999999999999 8999999 98888643 345
Q ss_pred h---hcCCEEEEEcCcCCCcccc-CCCCCCCCCceEEEhH
Q 013746 275 I---GQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVD 310 (437)
Q Consensus 275 l---~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~~~i~vd 310 (437)
+ .++|+||.+|+++...... .....|.+ .+.|.+|
T Consensus 103 ~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 103 LDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred hcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEec
Confidence 6 7999999999998642211 11123444 6777776
No 101
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.98 E-value=1.6e-08 Score=100.51 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=128.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
..++|.++++....+.|++.++++|+++..++.+.+.+ -+..++..-+|.+|..||.|-+.+..| ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~G 82 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPG 82 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCc
Confidence 34899999999999999999999999999999988753 357899999999999999999998888 778899999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCC---CCCCCcchhhhcc---CccceeeecCCcCchHHHHHHHHHHhhcC
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGR---GDFQELDQVEAVK---PFSKFAVKAKDITEVPKCVAQVLERAVSG 161 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~---~~~q~~d~~~~~~---~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 161 (437)
+.-..-++.-|-..++|++++..+++-...|. ..++++++. .+. .+..-.....+++++.+...+||+.|..-
T Consensus 83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~ 161 (376)
T PRK08659 83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKY 161 (376)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999987544332 223333322 111 34445666778889999999999999986
Q ss_pred CCceeEEEcCcch
Q 013746 162 RPGGCYLDLPTDV 174 (437)
Q Consensus 162 ~~GPv~l~iP~dv 174 (437)
+ -||.+....-+
T Consensus 162 ~-~PViv~~D~~l 173 (376)
T PRK08659 162 R-TPVIVLADEVV 173 (376)
T ss_pred C-CCEEEEechHh
Confidence 6 59998877643
No 102
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.94 E-value=2.4e-08 Score=99.02 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=127.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
.-|+|.++++....+.|++.+.++|+++..++.+.+.+ .|..++.+-+|.+|..||.|-+.+..| ++..|||||
T Consensus 4 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 81 (375)
T PRK09627 4 IISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPG 81 (375)
T ss_pred eEechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCch
Confidence 35799999999999999999999999999999987753 478999999999999999999998888 778899999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCCC---CCCCcchhhhcc---CccceeeecCCcCchHHHHHHHHHHhhcC
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG---DFQELDQVEAVK---PFSKFAVKAKDITEVPKCVAQVLERAVSG 161 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~---~~q~~d~~~~~~---~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 161 (437)
++-..-.+.-|...++|++++..+++-...|.- ..+++.+. ..+ .+.+-.....+++++.+...+||+.|..-
T Consensus 82 ~~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~-~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~ 160 (375)
T PRK09627 82 ISLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQA-KNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERF 160 (375)
T ss_pred HHHHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHH-hcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764433321 11111111 111 33444566677888888999999999875
Q ss_pred CCceeEEEcCcch
Q 013746 162 RPGGCYLDLPTDV 174 (437)
Q Consensus 162 ~~GPv~l~iP~dv 174 (437)
+ -||.+.....+
T Consensus 161 ~-~PViv~~D~~l 172 (375)
T PRK09627 161 M-TPVFLLLDETV 172 (375)
T ss_pred c-CceEEecchHH
Confidence 5 79999887754
No 103
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.92 E-value=7e-09 Score=85.08 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=122.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..|++++++.+.|++.||++...+|.+....++.-+++ +.|..|.+..|..+...+.|-+.+.+||+..+..||-| |
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlG--N 79 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLG--N 79 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccCcc--h
Confidence 57899999999999999999999999988888876654 46888877667777777778889999999999887755 8
Q ss_pred hHHHHHHhhh-CCCcEEEEecCCCccCCCCCCCCC---cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCcee
Q 013746 91 GLAGLSNGMI-NTWPIVMISGSCDQKDFGRGDFQE---LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC 166 (437)
Q Consensus 91 ~~~gi~~A~~-~~~Pvl~I~g~~~~~~~~~~~~q~---~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv 166 (437)
.+++++.-|. -++|+++|.+.+.....+-.+ |- --...+++.+---.+++.+|++..+.+..|+..|.... .||
T Consensus 80 siNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 80 SINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred HHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 8999888776 799999999876543322211 10 01123333333447788899999999999999998743 578
Q ss_pred EEEcCcchhcc
Q 013746 167 YLDLPTDVLHQ 177 (437)
Q Consensus 167 ~l~iP~dv~~~ 177 (437)
-+-+...+|++
T Consensus 158 ~vlls~~~We~ 168 (172)
T COG4032 158 AVLLSPKYWEA 168 (172)
T ss_pred EEEechHHhhh
Confidence 77776666643
No 104
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.91 E-value=3.8e-08 Score=97.07 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=127.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
.-++|.++++....+.|++.+.++|+++..++.+.+.+ .+..++..-+|.+|..||.|-+.+..| ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 82 (352)
T PRK07119 5 VLMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPG 82 (352)
T ss_pred eeehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcch
Confidence 35899999999999999999999999999999987743 367899999999999999999998888 677789999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhc---c-----CccceeeecCCcCchHHHHHHHHHHhh
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV---K-----PFSKFAVKAKDITEVPKCVAQVLERAV 159 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~---~-----~~~k~~~~v~~~~~~~~~l~~A~~~a~ 159 (437)
++-...++.-|.-.++|++++-.+++....+. .| .||-+++ + .+-.-.....+++++.+...+||+.|.
T Consensus 83 l~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~--t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE 159 (352)
T PRK07119 83 ISLKQEGISYLAGAELPCVIVNIMRGGPGLGN--IQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLAD 159 (352)
T ss_pred HHHHHHHHHHHHHccCCEEEEEeccCCCCCCC--Cc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877443332 22 2333332 2 222445556788889999999999999
Q ss_pred cCCCceeEEEcCcch
Q 013746 160 SGRPGGCYLDLPTDV 174 (437)
Q Consensus 160 ~~~~GPv~l~iP~dv 174 (437)
..+ -||.+.....+
T Consensus 160 ~~~-~PViv~~D~~l 173 (352)
T PRK07119 160 KYR-NPVMVLGDGVL 173 (352)
T ss_pred HhC-CCEEEEcchhh
Confidence 865 69998877654
No 105
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.81 E-value=7.3e-08 Score=100.97 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=128.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
..|+|.++++....+.|++.++++|+++..++.+.|.+ .++.++.+-+|.+|..||.|-+.+..| ++..|||||
T Consensus 194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 271 (562)
T TIGR03710 194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPG 271 (562)
T ss_pred EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCC
Confidence 45899999999999999999999999999999988753 379999999999999999999998887 777899999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCC---CCCCCcchhhhcc--CccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGR---GDFQELDQVEAVK--PFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~---~~~q~~d~~~~~~--~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+.-..-++.-|...++|++++.+|++-...|- ..++++.+....+ .+..-.....+++++.+...+||+.|..-+
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~ 351 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQ 351 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhc
Confidence 99889999999999999999999997544332 2222222211111 222334556677888889999999998754
Q ss_pred CceeEEEcCcchhc
Q 013746 163 PGGCYLDLPTDVLH 176 (437)
Q Consensus 163 ~GPv~l~iP~dv~~ 176 (437)
-||.+....-+.+
T Consensus 352 -~PViv~~D~~l~~ 364 (562)
T TIGR03710 352 -TPVIVLSDQYLAN 364 (562)
T ss_pred -CCEEEEechHHhC
Confidence 7999888776644
No 106
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75 E-value=2.4e-07 Score=92.39 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=122.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh------CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~------~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.-++|.++++......|++.++++|+++..++.+.+.+ -++.|+.+-+|.+|..||.|-+.+..| ++..|||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg 81 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSA 81 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCc
Confidence 45899999999999999999999999999999887742 258889999999999999999999888 7778999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhc--cCccceeeecCCcCchHHHHHHHHHHhhcCCC
Q 013746 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV--KPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 86 pG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~--~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
||+.-..-+|..|-..++|+++.-.+++-.. +-... .||.+++ +.---+.....+++++.+...+||+.|..-+
T Consensus 82 ~Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~~~--~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~- 157 (390)
T PRK08366 82 QGLALMHEMLHWAAGARLPIVMVDVNRAMAP-PWSVW--DDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN- 157 (390)
T ss_pred ccHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCCCc--chhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999999988776542 11111 1222211 1111123334678889999999999998654
Q ss_pred ceeEEEcCcchh
Q 013746 164 GGCYLDLPTDVL 175 (437)
Q Consensus 164 GPv~l~iP~dv~ 175 (437)
-||.+....-+.
T Consensus 158 ~PViv~~Dg~~~ 169 (390)
T PRK08366 158 LPAMVVESAFIL 169 (390)
T ss_pred CCEEEEecCccc
Confidence 789887754433
No 107
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.73 E-value=2.6e-07 Score=92.94 Aligned_cols=159 Identities=14% Similarity=0.026 Sum_probs=124.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh---C---CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---L---GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~---~---~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.-|+|.++++....+.|++.++|+|+++..++.+.+.+ . +..++..-+|.+|..||.|-+.+..| ++..|||
T Consensus 11 ~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~ 88 (407)
T PRK09622 11 EVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSS 88 (407)
T ss_pred eecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCc
Confidence 35899999999999999999999999999999887742 2 36789999999999999999988887 7778999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhc--cCccceeeecCCcCchHHHHHHHHHHhhcCC-
Q 013746 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV--KPFSKFAVKAKDITEVPKCVAQVLERAVSGR- 162 (437)
Q Consensus 86 pG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~--~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~- 162 (437)
||+.-..-+|..|...++|++++..++.-... -.. .-||.+++ +.-........+++++.++..+||+.|...+
T Consensus 89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i-~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~ 165 (407)
T PRK09622 89 QGLALMVEVLYQASGMRLPIVLNLVNRALAAP--LNV-NGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKV 165 (407)
T ss_pred chHHHHhhHHHHHHHhhCCEEEEEeccccCCC--cCC-CchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999888888764321 111 11332222 3222334555678889999999999998751
Q ss_pred CceeEEEcCcchh
Q 013746 163 PGGCYLDLPTDVL 175 (437)
Q Consensus 163 ~GPv~l~iP~dv~ 175 (437)
.-||.+....-+.
T Consensus 166 ~~Pviv~~Dg~~~ 178 (407)
T PRK09622 166 RLPVIVNQDGFLC 178 (407)
T ss_pred CCCEEEEechhhh
Confidence 3799988877653
No 108
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.70 E-value=5.4e-07 Score=90.05 Aligned_cols=159 Identities=17% Similarity=0.091 Sum_probs=123.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh------CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~------~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.-++|.++++......|++.++++|+++..++.+.+.+ -+.+|+.+-+|.+|..||.|-+.+..| ++..|||
T Consensus 5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~ 82 (394)
T PRK08367 5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATAS 82 (394)
T ss_pred EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeecc
Confidence 34899999999999999999999999999999887743 257899999999999999999998888 7788999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCC---CCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG---DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 86 pG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~---~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
||+.-..-.|..|...++|+++..+++.... ... .++++- ..+..-.......+++++.+..-.||+.|...+
T Consensus 83 ~Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~~d~~D~~---~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~ 158 (394)
T PRK08367 83 QGLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIWNDWQDTI---SQRDTGWMQFYAENNQEALDLILIAFKVAEDER 158 (394)
T ss_pred chHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcCcchHHHH---hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987775543 111 122211 123322223334677888888899999998643
Q ss_pred -CceeEEEcCcchhc
Q 013746 163 -PGGCYLDLPTDVLH 176 (437)
Q Consensus 163 -~GPv~l~iP~dv~~ 176 (437)
.-||.+....-...
T Consensus 159 ~~~Pviv~~Dgf~~s 173 (394)
T PRK08367 159 VLLPAMVGFDAFILT 173 (394)
T ss_pred cCCCEEEEechhhhc
Confidence 25888877765443
No 109
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.69 E-value=1.2e-07 Score=87.84 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=107.4
Q ss_pred HHHhcCCCEEEecCCCChHHHHHHHHh----CCC--cEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 013746 23 SLSLFGATHMFGVVGIPVTSLANRAVQ----LGV--RFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (437)
Q Consensus 23 ~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i--~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~ 96 (437)
...+.|++.++++|+++..++.+.+.+ .++ +++.+-+|.+|..|+.|.+....| ++..|+|||+.-..-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r--a~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR--AMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc--eEEeecCCcccccHhHHH
Confidence 356789999999999999998887642 344 999999999999999999987777 557899999998888999
Q ss_pred HhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 97 ~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
.+-..++|++++..+++....|....++-+-.-..+..-.-.....+++++.++...||+.|..-+ -||.+....-+.
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv~~Dg~~~ 157 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIVLFDGFLC 157 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEEEEECCCC
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEEEechhhh
Confidence 999999999999998876655444444433334445555556667788999999999999999855 799988876665
No 110
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=98.68 E-value=1.3e-08 Score=96.35 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=46.7
Q ss_pred CCCCCcchHHHHHHHhHhCC----CCcEEEEEcCccccC--CHHHHHHHHHcCccccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGF--SAVEVEVWLSCIIMISS 436 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p----~~~vv~i~GDG~f~~--~~~eL~Ta~r~~l~i~~ 436 (437)
..|+||+++|+|+|++++.+ +++|+|++|||+|++ +.++|.|+.++++|.++
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 45999999999999999965 899999999999998 57899999999998543
No 111
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.67 E-value=1.4e-08 Score=99.89 Aligned_cols=53 Identities=13% Similarity=-0.018 Sum_probs=47.6
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCC--HHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~--~~eL~Ta~r~~l~i~~i 437 (437)
..++||+++|.|+|++++. |+++|+|++|||+|+|+ .++|.||+++++|++.|
T Consensus 120 ~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~V 178 (341)
T TIGR03181 120 PNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFF 178 (341)
T ss_pred CCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEE
Confidence 3478999999999998887 89999999999999999 57899999999998764
No 112
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.66 E-value=6.6e-07 Score=91.26 Aligned_cols=161 Identities=19% Similarity=0.065 Sum_probs=112.7
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh--C---CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--L---GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~--~---~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~Gp 86 (437)
.-+.|-++|++.+-+.||.++-|+||++..+|.+.|.+ + ++.+--..||..|.-+|.|-+ ..|.-+++..- .|
T Consensus 14 ~~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~-~~G~ral~~mK-hV 91 (640)
T COG4231 14 RLLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGAS-YAGVRALVTMK-HV 91 (640)
T ss_pred HHhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhh-hcCceeeEEec-cc
Confidence 34678999999999999999999999999999998853 2 477778999999999998844 44544544432 45
Q ss_pred hhHhhHHHHHHhhhC--CCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCc
Q 013746 87 GCVHGLAGLSNGMIN--TWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPG 164 (437)
Q Consensus 87 G~~n~~~gi~~A~~~--~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~G 164 (437)
|+-=+.-.+..+.+. +=-+|+|+|+-+.....+.. -|....++.---+.....+++++.+.+..||......+ -
T Consensus 92 GlNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqne---qdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~ 167 (640)
T COG4231 92 GLNVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQNE---QDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-L 167 (640)
T ss_pred ccccchhhhhhhhhcCccccEEEEEccCCCcccccch---hHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-C
Confidence 532222233333332 22489999988765543322 23333444444466777788999999999999887654 6
Q ss_pred eeEEEcCcchhccc
Q 013746 165 GCYLDLPTDVLHQT 178 (437)
Q Consensus 165 Pv~l~iP~dv~~~~ 178 (437)
||-|-.-.++-+..
T Consensus 168 pVilr~ttr~~h~~ 181 (640)
T COG4231 168 PVILRTTTRVSHSR 181 (640)
T ss_pred CEEEEEEeeeeccc
Confidence 89888887776554
No 113
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.62 E-value=1.6e-06 Score=96.05 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=114.0
Q ss_pred CCcHHHHHHHHHHh-------cCC---CEEEecCCCChHHHHHHHHh-------CCCcEeeccchHHHHHHHHHHHh---
Q 013746 13 QIDGNTLAAKSLSL-------FGA---THMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGY--- 72 (437)
Q Consensus 13 ~~~~~~~i~~~L~~-------~Gv---~~vFg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~gyar--- 72 (437)
-++|.|+|++.+.+ .|+ ..|-|+||++...+.+.|.+ .+|.+-...||.-|+-++.|--+
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 47999999999988 999 99999999999999888743 35999999999999999966644
Q ss_pred -----HhCCcEEEEEcCChhhHhhHHHHHHhhhCCC----cEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCC
Q 013746 73 -----LTGKPGILLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKD 143 (437)
Q Consensus 73 -----~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~----Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~ 143 (437)
..|..+++. --|||+==+.-++..+...++ -||+|+|+-+.....+..+| -+...++..+. .....+
T Consensus 107 ~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~eqd-Sr~~~~~a~iP--vl~Ps~ 182 (1165)
T PRK09193 107 FPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTLPHQ-SEHAFKAAGMP--VLFPAN 182 (1165)
T ss_pred ccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccchhh-hHHHHHHcCCc--eeCCCC
Confidence 345444433 347886555556665555444 79999999877655444433 23333322222 445557
Q ss_pred cCchHHHHHHHHHHhhcCCCceeEEEcCcchhccc
Q 013746 144 ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (437)
Q Consensus 144 ~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~ 178 (437)
++++.+....||....... -||-+-.-.++.+..
T Consensus 183 ~qE~~d~~~~g~~lSr~~g-~pV~lr~~t~v~h~~ 216 (1165)
T PRK09193 183 VQEILDYGLHGWAMSRYSG-LWVGMKTVTDVVESS 216 (1165)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeee
Confidence 7778888888888877643 588887777776554
No 114
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=98.62 E-value=3.1e-08 Score=95.63 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCH--HHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~--~eL~Ta~r~~l~i~~i 437 (437)
..|+||+++|.|+|++++. |+++||+++|||+|+|+. ++|.||+++++|++.|
T Consensus 102 ~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 102 GNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 4699999999999998886 789999999999999873 6799999999998764
No 115
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.60 E-value=8.7e-06 Score=90.54 Aligned_cols=162 Identities=13% Similarity=0.092 Sum_probs=117.1
Q ss_pred cCCcHHHHHHHHHHh-------cCC---CEEEecCCCChHHHHHHHHh-------CCCcEeeccchHHHHHHHHHHHhH-
Q 013746 12 AQIDGNTLAAKSLSL-------FGA---THMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGYL- 73 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~-------~Gv---~~vFg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~gyar~- 73 (437)
.-++|.|+|++.+.+ .|+ ..|-|+||++...+.+.|.+ .+|.+-...||.-|+-+|.|-++.
T Consensus 18 ~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~ 97 (1159)
T PRK13030 18 IFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVE 97 (1159)
T ss_pred EeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence 458999999999999 999 99999999999999998743 358999999999999999998843
Q ss_pred -------hCCcEEEEEcCChhhHhhHHHHHHhhhCCC----cEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecC
Q 013746 74 -------TGKPGILLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK 142 (437)
Q Consensus 74 -------tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~----Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~ 142 (437)
.|..+++. --+||+==+.-++..+.+.++ -||+|+|+-+.....+.. |+-+...++..+. .....
T Consensus 98 ~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~e-qdSr~~~~~a~iP--vl~Ps 173 (1159)
T PRK13030 98 ADPERTVDGVFAMWY-GKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMP-HQSDFALIAWHMP--VLNPA 173 (1159)
T ss_pred ccCCccccceEEEEe-cCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcCH-HHHHHHHHHcCCc--eeCCC
Confidence 33333332 347886555566765555554 799999998766554433 2223333333332 45566
Q ss_pred CcCchHHHHHHHHHHhhcCCCceeEEEcCcchhccc
Q 013746 143 DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (437)
Q Consensus 143 ~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~ 178 (437)
+++++.+....||....... -||-+-.-.++.+..
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~-~pV~lr~~t~v~h~~ 208 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSG-AWVGFKAISETVESG 208 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeee
Confidence 77888888889998887643 588887777776554
No 116
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=98.50 E-value=7.4e-08 Score=94.57 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=48.8
Q ss_pred CeeecCCCCCCCcchHHHHHHHhHhC-----------CCCcEEEEEcCccccCCHH---HHHHHHHcCcccccC
Q 013746 378 RCRLDAGTWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV---EVEVWLSCIIMISSI 437 (437)
Q Consensus 378 ~~~~~~~~~g~mG~~lpaAiGaala~-----------p~~~vv~i~GDG~f~~~~~---eL~Ta~r~~l~i~~i 437 (437)
..++ +++++||+++|.|+|++++. |++.|||++|||+|+ .++ +|.||+++++|++.|
T Consensus 121 ~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvifv 191 (341)
T CHL00149 121 HNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLPIIFV 191 (341)
T ss_pred cCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCCEEEE
Confidence 4444 46799999999999999994 789999999999997 555 599999999998764
No 117
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.43 E-value=1.4e-07 Score=91.79 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=48.1
Q ss_pred CCCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCH--HHHHHHHHcCcccccC
Q 013746 384 GTWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 437 (437)
Q Consensus 384 ~~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~--~eL~Ta~r~~l~i~~i 437 (437)
+.+|+||+++|.|+|++++. +++.||+++|||+|++.. .+|.++.++++|++.|
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~v 166 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFV 166 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEE
Confidence 35699999999999999998 789999999999998764 5799999999998764
No 118
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.37 E-value=9e-06 Score=80.57 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=127.2
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~Gp 86 (437)
...++|.++++......|++.+.++|=++..++.+.+.+ .+..++..-+|.+|..|+.|-+.+.-| +...||||
T Consensus 3 ~~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~aGar--~~TaTSg~ 80 (365)
T COG0674 3 MVVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYAGAR--AFTATSGQ 80 (365)
T ss_pred eEeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhhCcc--eEeecCCc
Confidence 345899999999999999999999999999998887642 379999999999999999998887776 66779999
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCC---CCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCC
Q 013746 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD---FQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 87 G~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~---~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
|++-...++.-|.-.++|+++...+++-...+.-. +|++-+..- ..+.+.... +.+++.....+||+.|..-+
T Consensus 81 Gl~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~-~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~- 156 (365)
T COG0674 81 GLLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARD-TGFPILVSA--SVQEAFDLTLLAFNIAEKVL- 156 (365)
T ss_pred cHHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHHHc-cCceEEeec--cHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999877655422 233222111 133333333 77888888899999999855
Q ss_pred ceeEEEcCcchhcc
Q 013746 164 GGCYLDLPTDVLHQ 177 (437)
Q Consensus 164 GPv~l~iP~dv~~~ 177 (437)
-||.+.+..-+...
T Consensus 157 ~Pvi~~~D~~~~~h 170 (365)
T COG0674 157 TPVIVLLDGFLASH 170 (365)
T ss_pred CCEEEeeccchhcC
Confidence 78888766554443
No 119
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.35 E-value=4.3e-05 Score=84.76 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHH-------HhcCCC---EEEecCCCChHHHHHHHHh-------CCCcEeeccchHHHHHHHHHHHhH--
Q 013746 13 QIDGNTLAAKSL-------SLFGAT---HMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGYL-- 73 (437)
Q Consensus 13 ~~~~~~~i~~~L-------~~~Gv~---~vFg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~gyar~-- 73 (437)
-++|.|+|++.+ .+.|++ .|-|+||++...+.+.|.+ .+|.+-...||.-|+-|..|-.++
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~ 109 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL 109 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence 479999999999 999999 9999999999999988742 359999999999998888887763
Q ss_pred ------hCCcEEEEEcCChhhHhhHHHHHHhh--h--CCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCC
Q 013746 74 ------TGKPGILLTVSGPGCVHGLAGLSNGM--I--NTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKD 143 (437)
Q Consensus 74 ------tg~~~v~~~t~GpG~~n~~~gi~~A~--~--~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~ 143 (437)
.|..+++ .--|||+==+.-++..+. . -+=-||+++|+-+.....+..+| -+...++..+. .....+
T Consensus 110 ~~~a~~dGv~~lw-ygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~eqd-Sr~~~~~a~iP--vl~Ps~ 185 (1186)
T PRK13029 110 DPGAKRDGVFGMW-YGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSVAHQ-SDHTFIAWGIP--VLYPAS 185 (1186)
T ss_pred ccceeeccceEEE-ecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccCHHH-HHHHHHHcCCc--eeCCCC
Confidence 2322332 234788544444554332 2 23358999998876655444332 23332222222 444556
Q ss_pred cCchHHHHHHHHHHhhcCCCceeEEEcCcchhccc
Q 013746 144 ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (437)
Q Consensus 144 ~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~ 178 (437)
++++.+....||....... -||-+-.-.++.+..
T Consensus 186 ~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~v~~s~ 219 (1186)
T PRK13029 186 VQDYLDYGLHGWAMSRYSG-LWVGMKCVTEVVEST 219 (1186)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeeecc
Confidence 6777777888888877543 588888877776655
No 120
>PRK05899 transketolase; Reviewed
Probab=98.31 E-value=4e-07 Score=97.03 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCH-HH-HHHHHHcCccccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSA-VE-VEVWLSCIIMISS 436 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~-~e-L~Ta~r~~l~i~~ 436 (437)
..|+||+++|+|+|++++.+ +++|+|++|||+|+|+. +| |.||++++||.++
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li 183 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLI 183 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEE
Confidence 47999999999999999987 78999999999999997 55 9999999998543
No 121
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=98.31 E-value=3.9e-07 Score=82.48 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=47.9
Q ss_pred CCCCCcchHHHHHHHhHhCC----CCcEEEEEcCcccc--CCHHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p----~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~~i 437 (437)
..|++|.++|.|+|++++.+ +++|+|++|||+|+ +...+|.+|+++++|++.|
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~v 131 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVI 131 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEE
Confidence 46899999999999999875 78999999999998 8889999999999998764
No 122
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=98.08 E-value=4e-06 Score=84.51 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCCCCCcchHHHHHHHhHh-----------CCCCcEEEEEcCccccCC--HHHHHHHHHcCcccccC
Q 013746 384 GTWGTMGVGLGYCIAAAIA-----------CPERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 437 (437)
Q Consensus 384 ~~~g~mG~~lpaAiGaala-----------~p~~~vv~i~GDG~f~~~--~~eL~Ta~r~~l~i~~i 437 (437)
++++.||+++|.|+|++++ .+++.|+|++|||+|+.. ..+|.+|+.++||++.|
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfV 257 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV 257 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEE
Confidence 5678999999999999999 368899999999999755 23899999999998754
No 123
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.01 E-value=3.6e-06 Score=88.93 Aligned_cols=53 Identities=21% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCCCCcchHHHHHHHhHhC-----CCCcEEEEEcCcccc--CCHHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC-----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~-----p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~~i 437 (437)
..|++|.++|.|+|++++. ++++|+|++|||+|+ |+.++|.||.++++|++.|
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~I 174 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVI 174 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEE
Confidence 4689999999999999985 678999999999995 9999999999999998654
No 124
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=98.00 E-value=1.4e-05 Score=67.11 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCC--CCcccH-HHHhch----------
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH--PLAATA-ARSLAI---------- 275 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~h--p~~~G~-~~~~~l---------- 275 (437)
+-++.+|++|+||++++|..+.+.+..+.+.+|+|+.++|+++|....+.+-+.. .-+.+. ....++
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg 105 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG 105 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC
Confidence 4567889999999999999998777888899999999999999987654332211 001110 111111
Q ss_pred -hcCCEEEEEcCcCC
Q 013746 276 -GQCDVALVVGARLN 289 (437)
Q Consensus 276 -~~aDlvl~iG~~~~ 289 (437)
.+.|+||.+|+...
T Consensus 106 ~g~yDlviflG~~~y 120 (170)
T COG1880 106 NGNYDLVIFLGSIYY 120 (170)
T ss_pred CCCcceEEEEeccHH
Confidence 25799999998753
No 125
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.85 E-value=1.3e-05 Score=85.46 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=48.3
Q ss_pred CCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc--cCCHHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF--GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f--~~~~~eL~Ta~r~~l~i~~i 437 (437)
+.|+||+++|+|+|+++..++++|+|++|||+| .+...++.+|.++++|++.|
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I 175 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVI 175 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999999999 66778999999999998764
No 126
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.84 E-value=0.00041 Score=78.53 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=110.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHH---HhC------C--CcEeeccchHHHHHHHHHHHhHhCCcEEEE
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRA---VQL------G--VRFIAFHNEQSAGYAASAYGYLTGKPGILL 81 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al---~~~------~--i~~i~~~~E~~A~~~A~gyar~tg~~~v~~ 81 (437)
.|+|.++++..... |++.+|++|=++..++.+.+ ... | .+++..-+|.+|..|+.|.+.. |.. +..
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~a-Gar-a~T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQT-GAL-TTT 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhhc-CCC-EEE
Confidence 58999999999987 99999999977777766655 221 2 2799999999999999996654 433 456
Q ss_pred EcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC---CCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHh
Q 013746 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG---RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA 158 (437)
Q Consensus 82 ~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~---~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 158 (437)
.|+|+|+.-....|..+...++|+++...++.....+ .+.++++.+ .|...--.....+++++.++.-.|++.|
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~---~R~~G~ivl~s~svQEa~D~al~A~~lA 156 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMA---ARQTGFAMLASSSVQEVMDLALVAHLAT 156 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHHH---hhcCCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 7999999999999987777799999999987654332 122333211 1222212233346677888888889999
Q ss_pred hcCCCceeEEEcCc
Q 013746 159 VSGRPGGCYLDLPT 172 (437)
Q Consensus 159 ~~~~~GPv~l~iP~ 172 (437)
...+ -||.+.+.-
T Consensus 157 e~~~-~Pvi~~~Dg 169 (1165)
T TIGR02176 157 IEAR-VPFMHFFDG 169 (1165)
T ss_pred HhcC-CCEEEEecC
Confidence 8765 588776653
No 127
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=97.20 E-value=0.00071 Score=58.99 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC-CCCCCCCCCCCCcccH--HHHhc---------
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP-MGKGLLPDTHPLAATA--ARSLA--------- 274 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~-~gkg~~~~~hp~~~G~--~~~~~--------- 274 (437)
..+.++++|++||||++++|..+.+....+.........++|++.|. ..++. ++..|-| +. ...++
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~~~~~~l~~p~w~g~~ 100 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKIEPENELNDPHWNGTD 100 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HHHHHHHCCSTT--TTT
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccccHHHhcCCCCCCccc
Confidence 34789999999999999999999765545666777778999999886 56665 3333333 32 11111
Q ss_pred -hhcCCEEEEEcCcCC
Q 013746 275 -IGQCDVALVVGARLN 289 (437)
Q Consensus 275 -l~~aDlvl~iG~~~~ 289 (437)
=.+.|++|.+|....
T Consensus 101 g~g~~Dl~iFiGv~~y 116 (167)
T PF02552_consen 101 GHGNYDLVIFIGVHCY 116 (167)
T ss_dssp SS---SEEEEES--HH
T ss_pred cCCcccEEEEecchHH
Confidence 137899999998753
No 128
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.52 E-value=0.0038 Score=59.85 Aligned_cols=89 Identities=16% Similarity=0.046 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhC-----CCCcEEEEEc
Q 013746 340 MRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC-----PERLVVAVEG 413 (437)
Q Consensus 340 ~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~-----p~~~vv~i~G 413 (437)
++.+.+.+ .++.|++.+ |-.....+ .++.. .+-.+.....||.+.+.|.|++++. ++..|+++.|
T Consensus 30 ~~~l~~~l----g~~~v~~~~iGC~~~~~g--~~p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~G 100 (300)
T PRK11864 30 LRYLLKAL----GEKTVLVIPASCSTVIQG--DTPKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAG 100 (300)
T ss_pred HHHHHHHh----CCCeEEEeCCCccceecC--CCCcc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 35555555 667777777 33322111 11111 1112233578999999999999985 4567778999
Q ss_pred Cccc-cCCHHHHHHHHHcCcccccC
Q 013746 414 DSGF-GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 414 DG~f-~~~~~eL~Ta~r~~l~i~~i 437 (437)
||++ ....+.|.-|+..++|++.|
T Consensus 101 DG~~~~~g~~~l~~A~~~~~~v~~v 125 (300)
T PRK11864 101 DGGTADIGFQALSGAAERNHDILYI 125 (300)
T ss_pred cCccccccHHHHHHHHHhCcCEEEE
Confidence 9997 55667899999999998764
No 129
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.46 E-value=0.0055 Score=58.79 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHh----CCCCcEEEEEc
Q 013746 339 PMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA----CPERLVVAVEG 413 (437)
Q Consensus 339 ~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala----~p~~~vv~i~G 413 (437)
.++.|.+++ .++.+++.+ |-...+.+ .++. .|.. .+...+.||-+.+.|.|.+.+ .++++||++.|
T Consensus 29 ~~~~l~~a~----g~~~vi~~~iGC~s~~~~--~~p~-~~~~--~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~G 99 (299)
T PRK11865 29 AMRLALKAL----GKNTVIVVATGCLEVITT--PYPE-TAWN--VPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGG 99 (299)
T ss_pred HHHHHHHHc----CCCEEEEeCCCcccccCc--cCcC-Cccc--cccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 455555555 667777776 44433211 1121 1211 133457789999999998877 46779999999
Q ss_pred Cccc-cCCHHHHHHHHHcCcccccC
Q 013746 414 DSGF-GFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 414 DG~f-~~~~~eL~Ta~r~~l~i~~i 437 (437)
||+| -..++.|.-+++.+.+++.|
T Consensus 100 DG~~~dIG~~~L~~a~~r~~ni~~i 124 (299)
T PRK11865 100 DGGTADIGFQSLSGAMERGHNILYL 124 (299)
T ss_pred CchHhhccHHHHHHHHHcCCCeEEE
Confidence 9988 45567999999999988754
No 130
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.44 E-value=0.17 Score=43.88 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=77.0
Q ss_pred CcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH-HhhhCCCcEEEEecCCCccC-CCCCCCCCcchh
Q 013746 52 VRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS-NGMINTWPIVMISGSCDQKD-FGRGDFQELDQV 128 (437)
Q Consensus 52 i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~-~A~~~~~Pvl~I~g~~~~~~-~~~~~~q~~d~~ 128 (437)
-|++ ....|++.+.+|.|.+.. |...++.+. ..-...+...|. .+-..+.||+++........ .+-..+|.+++.
T Consensus 39 ~r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~ 116 (156)
T cd07033 39 DRFIDVGIAEQNMVGIAAGLALH-GLKPFVSTF-SFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDI 116 (156)
T ss_pred CCeEEeChhHHHHHHHHHHHHHC-CCeEEEEEC-HHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHH
Confidence 4655 678899999999999975 444444433 444556666777 77778999999987543333 222346788889
Q ss_pred hhccCcccee-eecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 129 EAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 129 ~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
.+++.+.... +...+++++..+++.|++ .+ +|+||-+|.
T Consensus 117 a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~~-~P~~irl~~ 156 (156)
T cd07033 117 ALLRAIPNMTVLRPADANETAAALEAALE----YD-GPVYIRLPR 156 (156)
T ss_pred HHhcCCCCCEEEecCCHHHHHHHHHHHHh----CC-CCEEEEeeC
Confidence 9999886544 334455666666655554 33 799998873
No 131
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.34 E-value=0.021 Score=54.93 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHH------------
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAAR------------ 271 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~------------ 271 (437)
-+++++++++.|.+||||+++-+.... -.+.+.-.+|+|++|+-+ +.+...+.|...
T Consensus 65 ~deAie~Aa~ILv~aKrPllyg~s~ts-cEA~~~gielaE~~gavi----------D~~asvchGp~~~alqe~g~p~~T 133 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLYGWSSTS-CEAQELGIELAEKLGAVI----------DSNASVCHGPSVLALQEAGKPTAT 133 (429)
T ss_pred HHHHHHHHHHHHHhccCceEeccccch-HHHHHHHHHHHHHhCcEe----------cCCCccccchHHHHHHhcCCcccc
Confidence 367899999999999999999876543 357777899999999833 333344444311
Q ss_pred -HhchhcCCEEEEEcCcCC
Q 013746 272 -SLAIGQCDVALVVGARLN 289 (437)
Q Consensus 272 -~~~l~~aDlvl~iG~~~~ 289 (437)
-+.=+.+|+|+..|+..-
T Consensus 134 lgevKNraDviVyWGtNP~ 152 (429)
T COG1029 134 LGEVKNRADVIVYWGTNPM 152 (429)
T ss_pred hhhhcccccEEEEeCCCcc
Confidence 123357999999998753
No 132
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=96.18 E-value=0.017 Score=53.81 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCH--HHHHHHHHcCcccccC
Q 013746 386 WGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 437 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~--~eL~Ta~r~~l~i~~i 437 (437)
.|--|.++++|+|.+.|+ ++++||+++|||++.-.+ ..|-.+-..+-++++|
T Consensus 110 ~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVI 167 (270)
T PF13292_consen 110 AGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVI 167 (270)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEE
T ss_pred CCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEE
Confidence 355678899999988886 578999999999986443 3566666666666543
No 133
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=96.08 E-value=0.065 Score=47.66 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=73.7
Q ss_pred CcEe-eccchHHHHHHHHHHHhHhC-CcEEEEEcCChhhH----hhHHHHH-HhhhCCCcEEEEecCCCccCCCCCCCCC
Q 013746 52 VRFI-AFHNEQSAGYAASAYGYLTG-KPGILLTVSGPGCV----HGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQE 124 (437)
Q Consensus 52 i~~i-~~~~E~~A~~~A~gyar~tg-~~~v~~~t~GpG~~----n~~~gi~-~A~~~~~Pvl~I~g~~~~~~~~~~~~q~ 124 (437)
-|++ ....|++.+.+|.|++...+ ++.++... ++=+. =....+. .....+.|+.+++...-....+-..+|.
T Consensus 48 ~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f-~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s 126 (178)
T PF02779_consen 48 GRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF-ADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHS 126 (178)
T ss_dssp TTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE-GGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSS
T ss_pred ceEEecCcchhhccceeeeeeecccccceeEeec-cccccccchhhhhhhhhhhhcccceecceeecCcccccccccccc
Confidence 3666 57899999999999998775 77666543 33333 2333444 5666778887444332222233356788
Q ss_pred cchhhhccCccceeeecC-CcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 125 LDQVEAVKPFSKFAVKAK-DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 125 ~d~~~~~~~~~k~~~~v~-~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
.+...+++.+..+....+ +++++..+++.|++. ..+|||||-.|....
T Consensus 127 ~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 127 IEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSEE
T ss_pred cccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHhC
Confidence 889999999987665544 445555555554442 235999999998754
No 134
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=95.99 E-value=0.0066 Score=55.76 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
.|.+|++++.|+|+++.+++..|+|++|||.+
T Consensus 61 ~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~ 92 (227)
T cd02011 61 GGELGYSLSHAYGAVFDNPDLIVACVVGDGEA 92 (227)
T ss_pred ccchhhHHHHHHHhhhcCCCcEEEEEECcCHH
Confidence 48899999999999999999999999999994
No 135
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=95.91 E-value=0.32 Score=48.27 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=94.8
Q ss_pred ccccccCccCCcHHHHHHHHHHhcCCC--EEEecCCCCh-----HHHHHHHHh-CC-CcEe-eccchHHHHHHHHHHHhH
Q 013746 4 SELQNSQNAQIDGNTLAAKSLSLFGAT--HMFGVVGIPV-----TSLANRAVQ-LG-VRFI-AFHNEQSAGYAASAYGYL 73 (437)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~L~~~Gv~--~vFg~pG~~~-----~~l~~al~~-~~-i~~i-~~~~E~~A~~~A~gyar~ 73 (437)
+.+..+.+.+++..+++.+.|.+..-+ .++.+.++.- ....+.+.+ -| -|++ ....|++++.+|.|+|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~ 104 (355)
T PTZ00182 25 STESKGATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMN 104 (355)
T ss_pred cccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhC
Confidence 445556667778888888888776433 5555555432 333444543 32 4566 567899999999999997
Q ss_pred hCCcEEEEEcCChhhHhhHHHHHH--hhh-------CCCcEEEEecCCCccCCCCCCC-CCcchhhhccCccceeeecC-
Q 013746 74 TGKPGILLTVSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGDF-QELDQVEAVKPFSKFAVKAK- 142 (437)
Q Consensus 74 tg~~~v~~~t~GpG~~n~~~gi~~--A~~-------~~~Pvl~I~g~~~~~~~~~~~~-q~~d~~~~~~~~~k~~~~v~- 142 (437)
..+|-++ ....+=+..++--|.+ |+. -++||+++...-.....| ..+ |.++ ++++.+.....-.+
T Consensus 105 G~~Pvv~-~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G-~tHs~~~e--a~lr~iPn~~V~~Ps 180 (355)
T PTZ00182 105 GLRPIAE-FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGG-AYHSQSFE--AYFAHVPGLKVVAPS 180 (355)
T ss_pred CCEEEEE-echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCC-CcccchHH--HHHhcCCCCEEEeeC
Confidence 5555444 3223222333332221 333 378888774322222212 223 5444 88888875554443
Q ss_pred CcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 143 DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 143 ~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
++.++..+++.| ... +||+||-.|..+..
T Consensus 181 d~~e~~~~l~~a----~~~-~~P~~i~~p~~l~r 209 (355)
T PTZ00182 181 DPEDAKGLLKAA----IRD-PNPVVFFEPKLLYR 209 (355)
T ss_pred CHHHHHHHHHHH----HhC-CCcEEEEeehHHhC
Confidence 455555555554 443 49999988876554
No 136
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=95.86 E-value=0.036 Score=49.17 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=73.2
Q ss_pred CcEeeccchH---HHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC
Q 013746 52 VRFIAFHNEQ---SAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR 119 (437)
Q Consensus 52 i~~i~~~~E~---~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~ 119 (437)
-+++..+.=. .+.-+|.|.+.+..|+.+|++-= -++.-.+..|..|.+.++|++++.-+...... +.
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GD-Gsf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~ 120 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLTGD-LSFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFED 120 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEeh-HHHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccc
Confidence 4566544311 24446677776667777766432 23333468899999999999999865542110 00
Q ss_pred ---CCC---CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 120 ---GDF---QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 120 ---~~~---q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+ +..|...+.+.+--...++.+++++.+.+++|++ ..||+.|++..|
T Consensus 121 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~v~ 175 (175)
T cd02009 121 EFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESALA-----QDGPHVIEVKTD 175 (175)
T ss_pred hhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHHh-----CCCCEEEEEeCC
Confidence 001 2356777777776667888888887777776653 258999998754
No 137
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=95.84 E-value=0.028 Score=50.85 Aligned_cols=109 Identities=7% Similarity=0.084 Sum_probs=75.3
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCC----CCCCCcchh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQV 128 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~----~~~q~~d~~ 128 (437)
+.-+|.|.+.+. +|+.+|++-=| ++.-.+..|..|.+.++|+++|.-+..... .+. ..+...|..
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~GDG-~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIAGDG-AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 444677777654 57777665433 344456889999999999999985433221 010 123346778
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+.+-....++.+++++...+++|++.+.. .||+.|++..|-
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~--~~p~liev~v~~ 180 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAE--GKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCC--CCeEEEEEEeCc
Confidence 88888888888999999988888888754333 589999998763
No 138
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=95.67 E-value=0.062 Score=57.78 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=79.0
Q ss_pred cEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-CCCCCCcchhhh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEA 130 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~~~~q~~d~~~~ 130 (437)
|+| ...-|++++.+|.|.++..|...++ .|..+=+.-+...|..+-..+.||+++........-. -..+|.++++++
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~ 475 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS 475 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH
Confidence 666 4788999999999999987865555 4555555555678888888899999997433222111 235799999999
Q ss_pred ccCcccee-eecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 131 VKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 131 ~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
++.+.... ++..++.++. .+++.|.....||+||-+|..
T Consensus 476 lr~iPn~~v~~PaD~~E~~----~~~~~a~~~~~gP~~irl~r~ 515 (653)
T TIGR00232 476 LRAIPNLSVWRPCDGNETA----AAWKYALESQDGPTALILSRQ 515 (653)
T ss_pred HhcCCCCEEEeeCCHHHHH----HHHHHHHhcCCCcEEEEEcCC
Confidence 99875432 2333433443 455555534469999999876
No 139
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.52 E-value=0.47 Score=41.25 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=77.2
Q ss_pred EEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhC-CCcEEEE
Q 013746 31 HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMIN-TWPIVMI 108 (437)
Q Consensus 31 ~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n-~~~gi~~A~~~-~~Pvl~I 108 (437)
.|++=.|.....++.. .+..-+++..-.=..+.-+|.|.+.+..++.+|++ |=|... .+..+..+... +.|+++|
T Consensus 16 ~vv~d~G~~~~~~~~~-~~~~~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~--GDG~f~m~~~el~t~~~~~~~~i~~v 92 (157)
T cd02001 16 PIVSTTGYASRELYDV-QDRDGHFYMLGSMGLAGSIGLGLALGLSRKVIVVD--GDGSLLMNPGVLLTAGEFTPLNLILV 92 (157)
T ss_pred EEEeCCCHhHHHHHHh-hcCCCCEEeecchhhHHHHHHHHHhcCCCcEEEEE--CchHHHhcccHHHHHHHhcCCCEEEE
Confidence 4444455544444222 12333555411112223356677666666666654 444442 34567777666 5999999
Q ss_pred ecCCCccC-CC-CCCCC-CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 109 SGSCDQKD-FG-RGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 109 ~g~~~~~~-~~-~~~~q-~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.-+..... .+ +...+ ..|...+.+.+--...++.+++++.+.+++|+. .+||+.|++..|
T Consensus 93 V~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~vi~v~i~ 155 (157)
T cd02001 93 VLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-----TTGPTLLHAPIA 155 (157)
T ss_pred EEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 86554321 11 11122 467778888887777888887777666666653 358999998764
No 140
>PLN02790 transketolase
Probab=95.48 E-value=0.085 Score=56.74 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=81.3
Q ss_pred cEe-eccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCC--CCCCCcchh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQV 128 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~ 128 (437)
||+ ...-|++++.+|.|.++-. |...++ .|..+=++-+..++..+...+.||+++....... .|. ..+|.+.++
T Consensus 393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~THq~iedl 470 (654)
T PLN02790 393 RNVRFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPTHQPIEHL 470 (654)
T ss_pred CeEEeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCCcccHHHH
Confidence 555 5677999999999999974 654444 3555555666778888889999999987433222 232 358999999
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.++|.+.... +-+|.+..+. ..+++.|.....||+||-+|..-
T Consensus 471 a~lR~iPnl~--V~~PaD~~E~-~~~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 471 ASLRAMPNIL--MLRPADGNET-AGAYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred HHhcCCCCcE--EEeCCCHHHH-HHHHHHHHHcCCCCEEEEecCCC
Confidence 9999997533 3345554433 35666665545699999999863
No 141
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=95.34 E-value=0.087 Score=46.30 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=73.6
Q ss_pred Ee-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhC-CCcEEEEecCCCccCCCC-CC-CCCcchhh
Q 013746 54 FI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMIN-TWPIVMISGSCDQKDFGR-GD-FQELDQVE 129 (437)
Q Consensus 54 ~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~-~~Pvl~I~g~~~~~~~~~-~~-~q~~d~~~ 129 (437)
++ ....|++.+.+|.|++....+|-+. +..+-+..+...+..+-.. ++|+++.... ....+. |. +|.+++..
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~--g~~~g~~G~tH~~~~~~~ 126 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVVA--IFFTFFDRAKDQIRSDGAMGRVPVVVRHDS--GGGVGEDGPTHHSQEDEA 126 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEEE--eeHHHHHHHHHHHHHhCcccCCCEEEEecC--ccccCCCCccccchhHHH
Confidence 55 6789999999999999987654433 4455555566666555444 4776665522 112222 43 88889999
Q ss_pred hccCccce-eeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 130 AVKPFSKF-AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 130 ~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+++.+... .+...+++++..+++.++ ....||+||-++.
T Consensus 127 ~~~~iP~~~v~~P~~~~e~~~~l~~a~----~~~~~p~~i~~~~ 166 (168)
T smart00861 127 LLRAIPGLKVVAPSDPAEAKGLLRAAI----RRDDGPPVIRLER 166 (168)
T ss_pred HHhcCCCcEEEecCCHHHHHHHHHHHH----hCCCCCEEEEecC
Confidence 99988753 345566777777777776 2335899998874
No 142
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.32 E-value=0.078 Score=45.80 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC--------CCCC--------CCC
Q 013746 61 QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRG--------DFQ 123 (437)
Q Consensus 61 ~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~--------~~~~--------~~q 123 (437)
..+.-+|.|.+.+. +|+.+|++-=| ++...+..|..|...++|+++|.-+..... .+.+ .+.
T Consensus 31 G~~~~~aiGa~~a~p~~~vv~i~GDG-~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (153)
T PF02775_consen 31 GYALPAAIGAALARPDRPVVAITGDG-SFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFP 109 (153)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEEEHH-HHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTST
T ss_pred CCHHHhhhHHHhhcCcceeEEecCCc-ceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcCcccccccccccc
Confidence 34556678888874 66766665333 344447899999999999999987654321 1110 145
Q ss_pred CcchhhhccCccceeeecCCc--CchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 124 ELDQVEAVKPFSKFAVKAKDI--TEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 124 ~~d~~~~~~~~~k~~~~v~~~--~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
.+|...+.+.+--...+++++ +++.+.+++|+ . .+||+.|+|
T Consensus 110 ~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~-~~gp~vIeV 153 (153)
T PF02775_consen 110 NPDFAALAEAFGIKGARVTTPDPEELEEALREAL----E-SGGPAVIEV 153 (153)
T ss_dssp TCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----H-SSSEEEEEE
T ss_pred cCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----h-CCCcEEEEc
Confidence 678888999986668888887 77766666665 3 359999985
No 143
>PTZ00089 transketolase; Provisional
Probab=95.31 E-value=0.098 Score=56.35 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=80.9
Q ss_pred cEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-CCCCCCCcchhhh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-GRGDFQELDQVEA 130 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~~~~~q~~d~~~~ 130 (437)
|++ ...-|++++.+|.|.+.-.|...++ .|..+=+.=+...|..+...+.||+++........- .-..+|.+.++++
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~~-~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~ 482 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGFIPFG-ATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLAL 482 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCCeEEE-EehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHH
Confidence 544 5677999999999999966643333 355565667777899999999999999633222221 1235899999999
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+|.+.-- .|-+|.+..+. ..+++.|.....||+||-+|..
T Consensus 483 lR~iPn~--~V~~PaD~~E~-~~~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 483 LRATPNL--LVIRPADGTET-SGAYALALANAKTPTILCLSRQ 522 (661)
T ss_pred HhcCCCc--EEEecCCHHHH-HHHHHHHHHcCCCCEEEEecCC
Confidence 9998643 33345554433 4566666644569999999976
No 144
>PRK12753 transketolase; Reviewed
Probab=95.22 E-value=0.12 Score=55.52 Aligned_cols=117 Identities=11% Similarity=-0.054 Sum_probs=82.7
Q ss_pred cEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-CCCCCCcchhhh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEA 130 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~~~~q~~d~~~~ 130 (437)
|++ ...-|++++.+|.|.+.-.|...++ .|..+=+.-+...|..+-..+.||+++........-. -..+|.+.++++
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~~-~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~ 481 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPYT-ATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS 481 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEEE-EehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH
Confidence 544 5677999999999999977754443 4556666677788888888999999985544333311 235899999999
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+|.+.... +-.|.+..+ +..+++.|.....||+||-++..
T Consensus 482 lR~iPn~~--v~~PaD~~E-~~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 482 LRLTPNFS--TWRPCDQVE-AAVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred HhcCCCCE--EEccCCHHH-HHHHHHHHHhcCCCCEEEEecCC
Confidence 99987433 334555433 34666767664569999999975
No 145
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=95.20 E-value=0.11 Score=46.06 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCcEeeccchHH---HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------C
Q 013746 51 GVRFIAFHNEQS---AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------G 118 (437)
Q Consensus 51 ~i~~i~~~~E~~---A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~ 118 (437)
.-+++....=.+ +.-+|.|.+.+. +++.+|++.=|.-..+ +..+..|...++|+++|.-+...... +
T Consensus 41 ~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~ 119 (178)
T cd02014 41 KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMG 119 (178)
T ss_pred CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc
Confidence 345554433222 334556666554 5677777654544444 67788899999999999866543211 1
Q ss_pred C----CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 119 R----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 119 ~----~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
. ..++..|...+.+.+--...++.+++++.+.+++| ... .+|+.|++..|
T Consensus 120 ~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a----~~~-~~p~liev~~~ 173 (178)
T cd02014 120 QPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEA----LAA-DGPVVIDVVTD 173 (178)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHH----HhC-CCCEEEEEEeC
Confidence 0 11234577778888766677888877765555554 433 48999998765
No 146
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=95.16 E-value=0.016 Score=57.30 Aligned_cols=47 Identities=19% Similarity=0.083 Sum_probs=37.8
Q ss_pred CCCCcchHHHHHHHhHhC-----------CCCcEEEEEcCccccCCHH--HHHHHHHcCc
Q 013746 386 WGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV--EVEVWLSCII 432 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~-----------p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l 432 (437)
.|++|.|++.|+|.+++. .+.+|+|++|||.++=... .+..|..++|
T Consensus 117 TGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL 176 (386)
T cd02017 117 TVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKL 176 (386)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCC
Confidence 488999999999988764 2578999999999987655 4777778887
No 147
>PRK12754 transketolase; Reviewed
Probab=95.13 E-value=0.14 Score=54.97 Aligned_cols=117 Identities=12% Similarity=-0.045 Sum_probs=83.3
Q ss_pred cEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCC-CCCCCcchhhh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR-GDFQELDQVEA 130 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~-~~~q~~d~~~~ 130 (437)
|+| ...-|++.+.+|.|.+.-.|...+ ..|..+=+.-+...|..+-..+.||+++........-.. ..+|.++++++
T Consensus 403 r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf-~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~ 481 (663)
T PRK12754 403 NYIHYGVREFGMTAIANGIALHGGFLPY-TSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVAS 481 (663)
T ss_pred CeEeeccchhhHHHHHhhHHhcCCCeEE-EEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHH
Confidence 544 567899999999999997775433 445666667777888888889999998875444333222 35899999999
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+|.+..- .+-+|.+..+. ..+++.|...+.||+||-++..
T Consensus 482 lR~iPn~--~V~~PaD~~E~-~~~~~~a~~~~~gP~yirl~R~ 521 (663)
T PRK12754 482 LRVTPNM--STWRPCDQVES-AVAWKYGVERQDGPTALILSRQ 521 (663)
T ss_pred HhcCCCc--EEecCCCHHHH-HHHHHHHHhCCCCCEEEEeCCC
Confidence 9998743 33345554443 4666666665569999999975
No 148
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=95.12 E-value=0.012 Score=57.57 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=37.5
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|++|.|++.|+|.++|.. +.+|+|++|||.++=... .+..|..++|.
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~ 173 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLD 173 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-T
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCC
Confidence 46899999999999998852 468999999999987655 57778888886
No 149
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=95.08 E-value=0.11 Score=45.84 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=66.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCC---------C-----CCCCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR---------G-----DFQELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~---------~-----~~q~~d~ 127 (437)
+.-+|.|.+... .++.+|++-=| ++.-....+..|...++|+++|.-+......-+ . .+...|.
T Consensus 53 ~lp~AiGa~la~~~~~vv~i~GDG-~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 131 (172)
T cd02004 53 GLGYAIAAALARPDKRVVLVEGDG-AFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRY 131 (172)
T ss_pred hHHHHHHHHHhCCCCeEEEEEcch-hhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCH
Confidence 444666776665 46666665333 333346889999999999988886543211100 0 1234577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+.+.+--...++.+++++.+.+++ +... +||+.|++..|
T Consensus 132 ~~la~a~G~~~~~v~~~~el~~al~~----a~~~-~~p~liev~i~ 172 (172)
T cd02004 132 DLVAEAFGGKGELVTTPEELKPALKR----ALAS-GKPALINVIID 172 (172)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHH----HHHc-CCCEEEEEEcC
Confidence 77888887677888886665555544 4443 58999998754
No 150
>PLN02790 transketolase
Probab=95.08 E-value=0.022 Score=61.19 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=40.5
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|.+|.+++.|+|.++|.. +++|+|++|||+++=... .+..|..++||
T Consensus 103 ~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~ 167 (654)
T PLN02790 103 TTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLG 167 (654)
T ss_pred cCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCC
Confidence 45889999999999988854 567999999999986544 57778889997
No 151
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=94.89 E-value=0.19 Score=44.60 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=66.2
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC---CCCCCcchhhhcc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---GDFQELDQVEAVK 132 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~---~~~q~~d~~~~~~ 132 (437)
+|.|.+.++ +++.+|++-=|. +.-....|..|.+.++|+++|.-+...... ++ ..++..|...+.+
T Consensus 56 ~aiGa~la~~~~~vv~i~GDG~-f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 134 (177)
T cd02010 56 GAIGAKLVYPDRKVVAVSGDGG-FMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAE 134 (177)
T ss_pred HHHHHHHhCCCCcEEEEEcchH-HHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHH
Confidence 455555554 466666654333 333346788899999999999754432110 00 1123357777888
Q ss_pred CccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 133 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+--...++.+++++.+.+++|+. .+||..|+++.|
T Consensus 135 a~G~~~~~v~~~~el~~al~~a~~-----~~~p~liev~~~ 170 (177)
T cd02010 135 SFGAKGYRIESADDLLPVLERALA-----ADGVHVIDCPVD 170 (177)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 887777889888887777766653 358999999876
No 152
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=94.53 E-value=0.041 Score=52.89 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCCCcchHHHHHHHhHhCCCCcEEEEEcCc-cccCCHHHHHHHHHcCcccccC
Q 013746 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDS-GFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p~~~vv~i~GDG-~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.+.-|-+.+.|.|.++|+++..||++.||| ++-...+.|.-+.|.|..|+.|
T Consensus 69 hs~~gra~a~atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~i 121 (294)
T COG1013 69 HSLHGRAAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYI 121 (294)
T ss_pred eeccCcchhhHHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEE
Confidence 456788999999999999999999999999 8999999999999999998764
No 153
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=94.47 E-value=0.26 Score=44.12 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=68.8
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CCC----C-CCCcchh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----D-FQELDQV 128 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~~----~-~q~~d~~ 128 (437)
.-+|.|.+.+. +++.+|++-=| ++.-.+..|..|...++|++++.-+...... +.. . ....|..
T Consensus 56 lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 134 (186)
T cd02015 56 LPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFV 134 (186)
T ss_pred HHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHH
Confidence 33556666554 46666665333 4555567899999999999999866543210 000 1 1235777
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+.+.+--...++++++++.+.+++|+ .. .||+.|++..|
T Consensus 135 ~~a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~ 174 (186)
T cd02015 135 KLAEAYGIKGLRVEKPEELEAALKEAL----AS-DGPVLLDVLVD 174 (186)
T ss_pred HHHHHCCCceEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeC
Confidence 888888878889988777766666654 33 58999999876
No 154
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=94.38 E-value=4.1 Score=39.95 Aligned_cols=152 Identities=10% Similarity=-0.019 Sum_probs=84.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEecCCCC-----hHHHHHHHH-hC-CCcEe-eccchHHHHHHHHHHHhHhCCcEEEEE
Q 013746 13 QIDGNTLAAKSLSLFG--ATHMFGVVGIP-----VTSLANRAV-QL-GVRFI-AFHNEQSAGYAASAYGYLTGKPGILLT 82 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~G--v~~vFg~pG~~-----~~~l~~al~-~~-~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~ 82 (437)
+++..+++.+.|.+.. =+.++.+..+- ...+.+.+. +- .-|++ ....|++++.+|.|.|....||-|++-
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4556666666666553 23455554431 111233343 23 35677 567899999999999997777766533
Q ss_pred cC---ChhhHhhHHHHHHhhh-------CCCcEEEEecCCCccCCCCCCC-CCcchhhhccCccceeeec-CCcCchHHH
Q 013746 83 VS---GPGCVHGLAGLSNGMI-------NTWPIVMISGSCDQKDFGRGDF-QELDQVEAVKPFSKFAVKA-KDITEVPKC 150 (437)
Q Consensus 83 t~---GpG~~n~~~gi~~A~~-------~~~Pvl~I~g~~~~~~~~~~~~-q~~d~~~~~~~~~k~~~~v-~~~~~~~~~ 150 (437)
.. ..+.-....-+ |+. -++||++....-.....|. .+ |.++ ++++.+.....-. .++.++..+
T Consensus 83 ~~~f~~ra~dQi~~d~--a~~~~~~~~~~~v~vv~~~~~g~~~~~G~-tH~~~~e--a~~r~iP~l~V~~P~d~~e~~~~ 157 (327)
T PRK09212 83 TFNFSMQAIDQIVNSA--AKTNYMSGGQLKCPIVFRGPNGAAARVAA-QHSQCYA--AWYSHIPGLKVVAPYFAADCKGL 157 (327)
T ss_pred hhhHHHHHHHHHHHHH--HHHhhccCCCcCccEEEEeCCCCCCCCCc-ccccCHH--HHHhcCCCCEEEeeCCHHHHHHH
Confidence 21 11211222222 333 2799998765433222221 24 5554 8999887655444 355566666
Q ss_pred HHHHHHHhhcCCCceeEEEcCcch
Q 013746 151 VAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 151 l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
++.|+ .. ++||||-.|...
T Consensus 158 l~~a~----~~-~~Pv~i~~~~~~ 176 (327)
T PRK09212 158 LKTAI----RD-PNPVIFLENEIL 176 (327)
T ss_pred HHHHH----hC-CCcEEEEEchhh
Confidence 65554 33 589999666543
No 155
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=94.38 E-value=0.041 Score=58.32 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=41.1
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccC-CHH-HHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGF-SAV-EVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~-~~~-eL~Ta~r~~l~i~~i 437 (437)
..|..|.++|.|+|.++|. .+++|+|++|||+|+- ... .|..|..+++|++.|
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~I 169 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIII 169 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEE
Confidence 3466677899999988774 4578999999999987 333 477888889998765
No 156
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=94.36 E-value=0.41 Score=43.43 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=71.1
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC----C----------
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----G---------- 120 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~----~---------- 120 (437)
-+|.|.+.+. +|+.+|++-=| ++.=.+..|..|.+.++|+++|.-+...... +. .
T Consensus 64 paaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~ 142 (202)
T cd02006 64 PAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSEL 142 (202)
T ss_pred HHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccccc
Confidence 3556655554 46666665333 3333457899999999999999865442110 00 0
Q ss_pred CCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 121 DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 121 ~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+..|...+.+.+-....++.+++++.+.+++|+..+.. ..||+.|++..|
T Consensus 143 ~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~-~~~p~liev~i~ 194 (202)
T cd02006 143 GGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAE-HRVPVVVEAILE 194 (202)
T ss_pred CCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhccc-CCCcEEEEEEec
Confidence 0123677788888887889999999988888887765432 248999999865
No 157
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=94.32 E-value=0.37 Score=51.21 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=90.5
Q ss_pred CcHHHHHHHHHHhcC--CCEEEecCC----CC-hHHHHHHHHhCCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 14 IDGNTLAAKSLSLFG--ATHMFGVVG----IP-VTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 14 ~~~~~~i~~~L~~~G--v~~vFg~pG----~~-~~~l~~al~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
++..+++.+.|.+.. -..++++-+ +. ...|.+.. .=|++ ...-|++.+.+|.|.|.. |...++.+ ..
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~R~i~~GIaE~~mvg~A~GlA~~-G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PDRYFDVGIAEQHAVTFAAGLATE-GLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hhhccCCChHHHHHHHHHHHHHHC-CCeeEEEe-eH
Confidence 455667777776653 334555422 22 22222222 22444 466799999999999994 44334433 44
Q ss_pred hhhHhhHHHHHH-hhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCC
Q 013746 86 PGCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 86 pG~~n~~~gi~~-A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
+=+.-+..-|.. +-..+.||+++..........-..+|.+.+.++++.+..+..- ..++.++.. +++.|....+
T Consensus 354 ~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~----~l~~a~~~~~ 429 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQ----MLYTALAYDD 429 (580)
T ss_pred HHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHH----HHHHHHhCCC
Confidence 444444554444 5568899999975433322112357888889999998765433 334445544 4455554446
Q ss_pred ceeEEEcCcchh
Q 013746 164 GGCYLDLPTDVL 175 (437)
Q Consensus 164 GPv~l~iP~dv~ 175 (437)
||+||.+|....
T Consensus 430 ~P~~ir~~r~~~ 441 (580)
T PRK05444 430 GPIAIRYPRGNG 441 (580)
T ss_pred CcEEEEecCCCC
Confidence 999999998653
No 158
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=94.25 E-value=2.9 Score=36.76 Aligned_cols=146 Identities=10% Similarity=-0.003 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCh----HHHHHHHHhC--CCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 17 NTLAAKSLSLFGATHMFGVVGIPV----TSLANRAVQL--GVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 17 ~~~i~~~L~~~Gv~~vFg~pG~~~----~~l~~al~~~--~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
.+.|.+.+++. -+.++--..... ....+.+.+. +.|++ ....|++...+|.|+++...+| ++-.+..+=+.
T Consensus 4 ~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~p-i~~~~~a~Fl~ 81 (167)
T cd07036 4 NEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRP-IVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEE-EEEeehHHHHH
Confidence 45566665533 444443332111 2345556543 34888 5689999999999999965443 33334555444
Q ss_pred hhHHHHHH--hhhC-------CCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeec-CCcCchHHHHHHHHHHhh
Q 013746 90 HGLAGLSN--GMIN-------TWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAV 159 (437)
Q Consensus 90 n~~~gi~~--A~~~-------~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~ 159 (437)
.++--|.+ |+.+ +.||+++..... ..+.|..|......+++.+-....-. .++.++..+++.+++
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~--- 156 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR--- 156 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---
Confidence 55544422 3443 699999874332 22344445444468889886655444 355556555555543
Q ss_pred cCCCceeEEEcC
Q 013746 160 SGRPGGCYLDLP 171 (437)
Q Consensus 160 ~~~~GPv~l~iP 171 (437)
. +||+++--|
T Consensus 157 -~-~~P~~~~e~ 166 (167)
T cd07036 157 -D-DDPVIFLEH 166 (167)
T ss_pred -C-CCcEEEEec
Confidence 3 389998665
No 159
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=94.11 E-value=0.27 Score=44.75 Aligned_cols=137 Identities=11% Similarity=0.025 Sum_probs=80.6
Q ss_pred EEecCCCChHHHHHHHH-hCCCcEeeccch---HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEE
Q 013746 32 MFGVVGIPVTSLANRAV-QLGVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIV 106 (437)
Q Consensus 32 vFg~pG~~~~~l~~al~-~~~i~~i~~~~E---~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl 106 (437)
++.=.|.+...+...+. +..-+++....= .-+.-+|.|.+.+. +++.+|++-=| ++.-....|..|...++|++
T Consensus 18 vv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ 96 (205)
T cd02003 18 VINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKII 96 (205)
T ss_pred EEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCCE
Confidence 33334554444443333 223455543221 12333555655544 46666665333 44444568888999999999
Q ss_pred EEecCCCccCC--------CC--------C----------CCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhc
Q 013746 107 MISGSCDQKDF--------GR--------G----------DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 107 ~I~g~~~~~~~--------~~--------~----------~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 160 (437)
+|.-+...... +. . ..+..|...+.+.+--...++.+++++.+.+++|++
T Consensus 97 ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~---- 172 (205)
T cd02003 97 IVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA---- 172 (205)
T ss_pred EEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh----
Confidence 99865442210 00 0 013467778888887778889888888777777653
Q ss_pred CCCceeEEEcCcch
Q 013746 161 GRPGGCYLDLPTDV 174 (437)
Q Consensus 161 ~~~GPv~l~iP~dv 174 (437)
.+||+.|++..|-
T Consensus 173 -~~gp~lIeV~v~~ 185 (205)
T cd02003 173 -SDRTTVIVIKTDP 185 (205)
T ss_pred -CCCCEEEEEEeec
Confidence 3589999998763
No 160
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=94.02 E-value=0.44 Score=42.98 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHhcCC---CE-EEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhH
Q 013746 15 DGNTLAAKSLSLFGA---TH-MFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCV 89 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv---~~-vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~ 89 (437)
..-+++.+.+.+.|+ +. ++.=-|.+ . +. + ..-.+....... ..+.-+|.|.+.+. +|+.++++-=|--..
T Consensus 9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~-~~-~-~~~~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~GDGs~f~ 83 (193)
T cd03375 9 SILKALAKALAELGIDPEKVVVVSGIGCS-S-RL-P-YYFNTYGFHTLH-GRALAVATGVKLANPDLTVIVVSGDGDLAA 83 (193)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCChh-c-ee-h-hhccccchhhhh-ccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence 456788888888876 33 33333432 1 11 1 101111111000 12333667777765 466666653332123
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCC-C----------C---CCC-----CCcchhhhccCcc-cee--eecCCcCch
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDF-G----------R---GDF-----QELDQVEAVKPFS-KFA--VKAKDITEV 147 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~----------~---~~~-----q~~d~~~~~~~~~-k~~--~~v~~~~~~ 147 (437)
-.+..+..|.+.++|+++|.-+...... + . ... ...|...+.+.+- ++. .++.+++++
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el 163 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL 163 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH
Confidence 4467899999999999999765432211 0 0 000 0145555666652 332 357777777
Q ss_pred HHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 148 PKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 148 ~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
.+.+++|++ .+||+.|++..+-+
T Consensus 164 ~~al~~al~-----~~gp~vIev~~~C~ 186 (193)
T cd03375 164 KEIIKKAIQ-----HKGFSFVEVLSPCP 186 (193)
T ss_pred HHHHHHHHh-----cCCCEEEEEECCCC
Confidence 666666653 35899999886644
No 161
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=93.93 E-value=0.51 Score=50.71 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=91.4
Q ss_pred cHHHHHHHHHHhcC--CCEEEec----CCCChHHHHHHHHh-CCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 013746 15 DGNTLAAKSLSLFG--ATHMFGV----VGIPVTSLANRAVQ-LGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (437)
Q Consensus 15 ~~~~~i~~~L~~~G--v~~vFg~----pG~~~~~l~~al~~-~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~Gp 86 (437)
+..+++.+.|.+.. -..|+++ +|+... +.+.+ ..=|++ ...-|++++.+|.|.|. .|...++.+ ..+
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~---~~f~~~~p~R~id~GIaE~~mvg~AaGlA~-~G~~P~v~~-f~~ 394 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTGL---DKLQKRFPNRVFDVGIAEQHAVTFAAGLAA-AGLKPFCAV-YST 394 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCh---HHHHHhCCCcccccCccHHHHHHHHHHHHH-CCCEEEEEe-hHH
Confidence 45566666666542 3456655 333222 33322 223555 56789999999999998 554444443 555
Q ss_pred hhHhhHHHH-HHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCc
Q 013746 87 GCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPG 164 (437)
Q Consensus 87 G~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~G 164 (437)
=+.-+...| .++-..+.||+++.......-..-..+|.+.+.++++.+..+..- ..++.++..+++.| .....|
T Consensus 395 Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a----~~~~~~ 470 (641)
T PRK12571 395 FLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA----AAHDDG 470 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH----HhCCCC
Confidence 556666776 446778999998862222111111347888888999998765443 33445555555444 443359
Q ss_pred eeEEEcCcc
Q 013746 165 GCYLDLPTD 173 (437)
Q Consensus 165 Pv~l~iP~d 173 (437)
|+||-+|..
T Consensus 471 P~~ir~~r~ 479 (641)
T PRK12571 471 PIAVRFPRG 479 (641)
T ss_pred cEEEEEecC
Confidence 999999976
No 162
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.92 E-value=0.38 Score=42.95 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=64.0
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-----C----CCCCCCcchhhhccCcc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-----G----RGDFQELDQVEAVKPFS 135 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-----~----~~~~q~~d~~~~~~~~~ 135 (437)
+|.|.+.++ +++.+|++-= -++.-.+..+..|...++|+++|.-+...... + ...++..|...+.+.+-
T Consensus 58 ~aiGaala~~~~~vv~i~GD-G~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G 136 (183)
T cd02005 58 AALGAALAAPDRRVILLVGD-GSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFG 136 (183)
T ss_pred HHHHHHHhCCCCeEEEEECC-chhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhC
Confidence 455555555 3555555422 23333456788999999999999865543211 0 01123356667777765
Q ss_pred ----ceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 136 ----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 136 ----k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
-+..++.+++++.+.+++|++ ..+||+.|++..|
T Consensus 137 ~~~~~~~~~v~~~~el~~al~~a~~----~~~~p~liev~~~ 174 (183)
T cd02005 137 GGGGGLSFRVKTEGELDEALKDALF----NRDKLSLIEVILP 174 (183)
T ss_pred CCccccEEEecCHHHHHHHHHHHHh----cCCCcEEEEEEcC
Confidence 457788887777666666664 1258999999875
No 163
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=93.92 E-value=0.14 Score=46.40 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCCCcchHHHHHHH----hHhCCCCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 386 WGTMGVGLGYCIAA----AIACPERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 386 ~g~mG~~lpaAiGa----ala~p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
.|++|.|++.|+|. ++...+.+|.+++|||-+.-... ...+|+.|+|.
T Consensus 118 tGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~ 171 (243)
T COG3959 118 TGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLD 171 (243)
T ss_pred CCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccC
Confidence 35566665555554 55556789999999998876433 57778888875
No 164
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=93.90 E-value=0.15 Score=51.58 Aligned_cols=87 Identities=24% Similarity=0.259 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCc-cc---HHHHhchhcC
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-AT---AARSLAIGQC 278 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~-~G---~~~~~~l~~a 278 (437)
.=+++++.++++|+++++|+++ |.+.........+.+|++.+|..+- +.......+..+.+. .| ..-.+...++
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~di~~~a 132 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDSGWPTTTLGEVKNRA 132 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhCCCccccHHHHHhcC
Confidence 3467899999999999999887 4444333455678899999997432 111111122111111 01 0111222479
Q ss_pred CEEEEEcCcCCCc
Q 013746 279 DVALVVGARLNWL 291 (437)
Q Consensus 279 Dlvl~iG~~~~~~ 291 (437)
|+||.+|+.+...
T Consensus 133 d~il~~G~n~~~~ 145 (415)
T cd02761 133 DVIVYWGTNPMHA 145 (415)
T ss_pred CEEEEEcCCcccc
Confidence 9999999987543
No 165
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.81 E-value=0.064 Score=57.51 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=41.3
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCHH--HHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i~~i 437 (437)
+.|..|.+++.|+|.+++. .+++|++++|||++.-..- .|-.|..+++|++.|
T Consensus 142 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~i 200 (677)
T PLN02582 142 GTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVI 200 (677)
T ss_pred ccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEE
Confidence 3577888999999988774 4678999999999976543 566777788887654
No 166
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=93.80 E-value=1.3 Score=43.39 Aligned_cols=149 Identities=11% Similarity=-0.094 Sum_probs=85.3
Q ss_pred CcHHHHHHHHHHhcCC--CEEEecCCCC-----hHHHHHHHHhC-CC-cEe-eccchHHHHHHHHHHHhHhCCcEEEEEc
Q 013746 14 IDGNTLAAKSLSLFGA--THMFGVVGIP-----VTSLANRAVQL-GV-RFI-AFHNEQSAGYAASAYGYLTGKPGILLTV 83 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv--~~vFg~pG~~-----~~~l~~al~~~-~i-~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t 83 (437)
++-.+++.+.|.+..- +.++.+-.+- .....+.+.+. +- |++ ....|++.+.+|.|.|....+|-++...
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 4555666666655532 3455553332 23445555543 43 788 5689999999999999977776554322
Q ss_pred C---ChhhHhhHHHHHHhhh-----CCCcEEEEecCCCccCCCCCC-C-CCcchhhhccCccceeeec-CCcCchHHHHH
Q 013746 84 S---GPGCVHGLAGLSNGMI-----NTWPIVMISGSCDQKDFGRGD-F-QELDQVEAVKPFSKFAVKA-KDITEVPKCVA 152 (437)
Q Consensus 84 ~---GpG~~n~~~gi~~A~~-----~~~Pvl~I~g~~~~~~~~~~~-~-q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~ 152 (437)
+ ..+.-...+.++...+ -++||++..+.-.. .+.|. + |.+ .++++.+..+.... .++.++..+++
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~--~~~G~tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVG--RQLGAEHSQRL--ESYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCC--CCCCccccccH--HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 1 1222223333322221 38899988543222 12232 3 444 49999998775554 45666666665
Q ss_pred HHHHHhhcCCCceeEEEcC
Q 013746 153 QVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 153 ~A~~~a~~~~~GPv~l~iP 171 (437)
.|++ . +|||||--|
T Consensus 160 ~a~~----~-~~Pv~ire~ 173 (327)
T CHL00144 160 SAIR----S-NNPVIFFEH 173 (327)
T ss_pred HHHh----C-CCcEEEEEc
Confidence 5543 3 499999633
No 167
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=93.79 E-value=0.61 Score=49.88 Aligned_cols=152 Identities=10% Similarity=0.062 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHHhcCC--CEEEec----CCCChHHHHHHHHh-CCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 14 IDGNTLAAKSLSLFGA--THMFGV----VGIPVTSLANRAVQ-LGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv--~~vFg~----pG~~~~~l~~al~~-~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.+-.+++.+.|.+..- +.|+.+ +++.. ++.+.+ -.=|++ ...-|++++.+|.|.|.. |...+|.+ ..
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~---~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~-G~~Pvv~~-~a 384 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG---LDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIE-GYKPFVAI-YS 384 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC---hHHHHHHCccccccCCccHHHHHHHHHHHHHC-CCEEEEEe-cH
Confidence 3556677777766532 345553 32222 233322 123444 567899999999999985 54444443 55
Q ss_pred hhhHhhHHHH-HHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCC
Q 013746 86 PGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 86 pG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
+=+.-++--| .++-..+.||+++..........-..+|.+....+++.+.-.... ..++.++..+++.|+ ...+
T Consensus 385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~----~~~~ 460 (617)
T TIGR00204 385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGY----HYDD 460 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH----hCCC
Confidence 5444444444 334567899999865433321112347777778899998765433 445555555555544 4345
Q ss_pred ceeEEEcCcch
Q 013746 164 GGCYLDLPTDV 174 (437)
Q Consensus 164 GPv~l~iP~dv 174 (437)
||+||-+|...
T Consensus 461 ~Pv~ir~~r~~ 471 (617)
T TIGR00204 461 GPIAVRYPRGN 471 (617)
T ss_pred CCEEEEEccCC
Confidence 99999999753
No 168
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=93.72 E-value=0.79 Score=40.66 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=62.8
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhH--hhHHHHHHhhhCCCcEEEEecCCCccC-CCC-----------CCCCCcchhhh
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCV--HGLAGLSNGMINTWPIVMISGSCDQKD-FGR-----------GDFQELDQVEA 130 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~--n~~~gi~~A~~~~~Pvl~I~g~~~~~~-~~~-----------~~~q~~d~~~~ 130 (437)
+|.|.+.+. .++.++++ |=|.. +.+..|..|...++|+++|.-+..... .+. ......|...+
T Consensus 59 ~AiGa~la~p~~~Vv~i~--GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~ 136 (178)
T cd02008 59 VAIGMAKASEDKKVVAVI--GDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEAL 136 (178)
T ss_pred HHhhHHhhCCCCCEEEEe--cChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHH
Confidence 455665554 35555554 44433 336789999999999999986654321 110 00123577788
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
++.+--...++.+++++.++ .+|++.|... +||..|++
T Consensus 137 a~a~G~~~~~v~~~~~l~~~-~~al~~a~~~-~gp~lI~v 174 (178)
T cd02008 137 VRAIGVKRVVVVDPYDLKAI-REELKEALAV-PGVSVIIA 174 (178)
T ss_pred HHHCCCCEEEecCccCHHHH-HHHHHHHHhC-CCCEEEEE
Confidence 88887778888888888732 2445555443 58988875
No 169
>PRK12753 transketolase; Reviewed
Probab=93.71 E-value=0.066 Score=57.61 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|++|.+++.|+|.++|.. +.+|+|++|||+++=... .+..|..++|+
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~ 176 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLG 176 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCC
Confidence 46889999999999988842 478999999999886654 47778889997
No 170
>PRK05261 putative phosphoketolase; Provisional
Probab=93.67 E-value=0.063 Score=58.02 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=30.1
Q ss_pred CCCCcchHHHHHHHhHhCCCCcEEEEEcCccc
Q 013746 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f 417 (437)
.|.+|++++.|.|+++.+|+..|+|++|||.+
T Consensus 141 ~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~ 172 (785)
T PRK05261 141 GGELGYSLSHAYGAAFDNPDLIVACVVGDGEA 172 (785)
T ss_pred CCchhhHHHHHHHHHHcCCCCEEEEEECcCch
Confidence 48899999999999999999999999999993
No 171
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=93.62 E-value=0.071 Score=57.32 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCHH--HHHHHHHcCccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI 434 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i 434 (437)
..|++|.+++.|+|.+++.. +.+|+|++|||+++=... .+..|..++||-
T Consensus 108 ~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~n 173 (653)
T TIGR00232 108 TTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGK 173 (653)
T ss_pred CCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCc
Confidence 45889999999999888742 567999999999987543 477788999983
No 172
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=93.59 E-value=0.066 Score=52.04 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCCCcchHHHHHHHhHhCCCCcEEEEEcCcccc
Q 013746 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG 418 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~ 418 (437)
.|-+||++.-|.||.+-+||..|+|++|||.+=
T Consensus 139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaE 171 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAE 171 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGG
T ss_pred CcchhhHHHHHhhcccCCCCeEEEEEecCCccc
Confidence 377899999999999999999999999999863
No 173
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=93.56 E-value=0.081 Score=56.50 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCHH--HHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i~~i 437 (437)
..|..|.+++.|+|.+++. .+.+|+|++|||+++-..- .+..|..+++|++.|
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~i 167 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVI 167 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEE
Confidence 3466778899999987775 5679999999999876543 577778899988543
No 174
>PRK12754 transketolase; Reviewed
Probab=93.56 E-value=0.075 Score=56.99 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCHH--HHHHHHHcCccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI 434 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i 434 (437)
..|++|.+++.|+|.+++.. +.+|+|++|||+++=... .+..|..++|+-
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~n 177 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGK 177 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCC
Confidence 46889999999999988832 578999999999986644 477788999984
No 175
>PTZ00089 transketolase; Provisional
Probab=93.55 E-value=0.064 Score=57.74 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|.+|.+++.|+|.+++.. +++|+|++|||+++=... .+..|..++|+
T Consensus 114 ~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~ 178 (661)
T PTZ00089 114 TTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLE 178 (661)
T ss_pred CCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCC
Confidence 36889999999999888752 567999999999876544 47777888986
No 176
>PRK06163 hypothetical protein; Provisional
Probab=93.42 E-value=5.9 Score=35.95 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=84.7
Q ss_pred CccCCcHHHHHHHHHHhcCCC-EEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChh
Q 013746 10 QNAQIDGNTLAAKSLSLFGAT-HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPG 87 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~-~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG 87 (437)
..+.++--+++-+..+...=+ .++.=-|.+...++.. ....-+++..-.=..+.-+|.|.+.+. .++.+|++ |=|
T Consensus 9 ~~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~-~~~~~~~~~~GsMG~glpaAiGaalA~p~r~Vv~i~--GDG 85 (202)
T PRK06163 9 NAKVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAA-GQRPQNFYMLGSMGLAFPIALGVALAQPKRRVIALE--GDG 85 (202)
T ss_pred CCCCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHh-hcCCCCeEeecccccHHHHHHHHHHhCCCCeEEEEE--cch
Confidence 334455555554444444422 2444344433334332 222223442111222333566666554 45555554 444
Q ss_pred -hHhhHHHHHHhhh-CCCcEEEEecCCCccCC-C-C--CCCCCcchhhhccCccce-eeecCCcCchHHHHHHHHHHhhc
Q 013746 88 -CVHGLAGLSNGMI-NTWPIVMISGSCDQKDF-G-R--GDFQELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 88 -~~n~~~gi~~A~~-~~~Pvl~I~g~~~~~~~-~-~--~~~q~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~ 160 (437)
+.-.+..|..+.. ..+|+++|.-+...... + + ...+..|...+.+.+.-. .+++++++++...+++|++
T Consensus 86 ~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~---- 161 (202)
T PRK06163 86 SLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS---- 161 (202)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh----
Confidence 3334567888765 47899998866543221 1 1 112345777777777554 5688888888777777753
Q ss_pred CCCceeEEEcCcc
Q 013746 161 GRPGGCYLDLPTD 173 (437)
Q Consensus 161 ~~~GPv~l~iP~d 173 (437)
.+||+.|++..|
T Consensus 162 -~~~p~lIeV~i~ 173 (202)
T PRK06163 162 -GPGPSFIAVRID 173 (202)
T ss_pred -CCCCEEEEEEec
Confidence 358999999876
No 177
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.39 E-value=0.62 Score=50.11 Aligned_cols=152 Identities=14% Similarity=0.011 Sum_probs=93.2
Q ss_pred CcHHHHHHHHHHhcCC--CEEEec----CCCChHHHHHHHHh-CCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 013746 14 IDGNTLAAKSLSLFGA--THMFGV----VGIPVTSLANRAVQ-LGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv--~~vFg~----pG~~~~~l~~al~~-~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~G 85 (437)
.+.++++.+.|.+..- +.|+.+ +|+.-.. .+.+ -.=||+ ...-|++++.+|.|.|...-||-+++ ..
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~---~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~--fs 430 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN---LFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YS 430 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchH---HHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEe--cH
Confidence 3677788888877643 355555 4443322 2322 234444 56789999999999999666665543 44
Q ss_pred hhhHhhHHHH-HHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeec-CCcCchHHHHHHHHHHhhcCCC
Q 013746 86 PGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 86 pG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
+=+.-+..-| .++...+.||+++..........-..+|.+....+++.+..+.... .++.++..+++.| ....+
T Consensus 431 ~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a----l~~~~ 506 (677)
T PLN02582 431 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATA----AAIDD 506 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH----HhCCC
Confidence 4444555533 5556789999988543322111123477777788888887655444 3445555555444 43345
Q ss_pred ceeEEEcCcch
Q 013746 164 GGCYLDLPTDV 174 (437)
Q Consensus 164 GPv~l~iP~dv 174 (437)
|||||..|...
T Consensus 507 gPv~IR~pr~~ 517 (677)
T PLN02582 507 RPSCFRYPRGN 517 (677)
T ss_pred CCEEEEEecCC
Confidence 99999999864
No 178
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=93.38 E-value=1.9 Score=38.37 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCC-CcEEEEecCCCccCC-C-C--CCCCCcchhhhccCccce
Q 013746 64 GYAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINT-WPIVMISGSCDQKDF-G-R--GDFQELDQVEAVKPFSKF 137 (437)
Q Consensus 64 ~~~A~gyar~tg~~~v~~~t~GpG~~n-~~~gi~~A~~~~-~Pvl~I~g~~~~~~~-~-~--~~~q~~d~~~~~~~~~k~ 137 (437)
.-+|.|.+.+..++.+|++ |=|... .+..+..|...+ .|+++|.-+...... + + ......|...+.+.+--.
T Consensus 48 lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~ 125 (181)
T TIGR03846 48 SSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIR 125 (181)
T ss_pred HHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCC
Confidence 3356666665577767665 333333 346788887788 599999855432211 1 0 011245777777777655
Q ss_pred eee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 138 AVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 138 ~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+ +.+++++.+.++ | .. .+||+.|++..|
T Consensus 126 ~~~~v~~~~~l~~al~-a----~~-~~~p~li~v~~~ 156 (181)
T TIGR03846 126 NVEKVADEEELRDALK-A----LA-MKGPTFIHVKVK 156 (181)
T ss_pred eEEEeCCHHHHHHHHH-H----Hc-CCCCEEEEEEeC
Confidence 555 888776665553 3 33 358999999876
No 179
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.28 E-value=0.13 Score=54.96 Aligned_cols=51 Identities=16% Similarity=-0.038 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHHhHhC----CCCcEEEEEcCcccc--CCHHHHHHHHHcCcccccC
Q 013746 387 GTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 387 g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~~i 437 (437)
|.-+.++++|+|.+.|+ .++.||+++|||++. |....|-.+...+-++++|
T Consensus 189 GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livI 245 (701)
T PLN02225 189 GHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVI 245 (701)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEE
Confidence 44466799999988884 567999999999985 3334566666655555543
No 180
>PRK05261 putative phosphoketolase; Provisional
Probab=93.21 E-value=3.3 Score=45.20 Aligned_cols=205 Identities=17% Similarity=0.134 Sum_probs=112.0
Q ss_pred CcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhh---------------hCCCcEEEEecCCCccC
Q 013746 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGM---------------INTWPIVMISGSCDQKD 116 (437)
Q Consensus 52 i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~---------------~~~~Pvl~I~g~~~~~~ 116 (437)
=++|....|..+..++.||.. +|+.+.+.+ .. .+...+-.+.+++ ..++. +++|.+.=.-.
T Consensus 450 Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~s-Ye-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~~qg 525 (785)
T PRK05261 450 GRVMEVLSEHLCEGWLEGYLL-TGRHGFFSS-YE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVWRQD 525 (785)
T ss_pred CCeeeeecHHHHHHHHHHHHh-cCCCcceec-HH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecceeecC
Confidence 477889999999999999999 898877654 33 4554445666665 33444 33343321111
Q ss_pred CCCCCCCC---cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhccccchhHHHHHHHHhhh
Q 013746 117 FGRGDFQE---LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193 (437)
Q Consensus 117 ~~~~~~q~---~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~ 193 (437)
..--.+|+ +|++...++=. .++-.|.+..+.+ .|++.|...+.+|..|.+...-+.+-.+.......
T Consensus 526 hNG~THQ~Pg~ie~l~~~r~~~---~rV~rPaDaNe~l-aa~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~------ 595 (785)
T PRK05261 526 HNGFSHQDPGFIDHVANKKPDV---IRVYLPPDANTLL-AVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKH------ 595 (785)
T ss_pred CCCCCCCCchHHHHHHhcCCCc---ceEEeCCCHHHHH-HHHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHh------
Confidence 11235888 88888877733 3444555554444 56777776677899998876422211111100000
Q ss_pred hcccccCCCCCHHHHHHHHHHHH------hCCCcEEEEcCCcCccc-hHHHHHHHHHH---hCCCeeeCCC-CCCCCCCC
Q 013746 194 AKETVTQGGIVNSDIDKAVSLLK------EAKKPLIVFGKGAAYAR-AEGELKKLVES---TGIPFLPTPM-GKGLLPDT 262 (437)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~------~a~rPvil~G~g~~~~~-~~~~l~~lae~---~g~pv~tt~~-gkg~~~~~ 262 (437)
+++=+-.+. ..+.-+++++.|.--.- +.++...|.++ +++-|+.-.. -+-.-++.
T Consensus 596 --------------~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~ 661 (785)
T PRK05261 596 --------------CTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSE 661 (785)
T ss_pred --------------ccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCccc
Confidence 000000011 11345677766643222 34445555554 3445554421 22233668
Q ss_pred CCCcccHHHHhchhcCC--EEEEE
Q 013746 263 HPLAATAARSLAIGQCD--VALVV 284 (437)
Q Consensus 263 hp~~~G~~~~~~l~~aD--lvl~i 284 (437)
||..+.......+-..| +|+.+
T Consensus 662 ~~~~lsd~~f~~lFt~d~pvif~~ 685 (785)
T PRK05261 662 HPHGLSDREFDALFTTDKPVIFAF 685 (785)
T ss_pred CCCCCCHHHHHHhCCCCCcEEEEe
Confidence 89888876666666667 55554
No 181
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=93.19 E-value=2.7 Score=37.04 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCcEeeccchHHHH---HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------
Q 013746 51 GVRFIAFHNEQSAG---YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------- 117 (437)
Q Consensus 51 ~i~~i~~~~E~~A~---~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------- 117 (437)
.-+++.... .+-+ -+|.|.+.+. .++.+|++-=| ++.-....+..|...+.|+++|.-+......
T Consensus 40 ~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~ 117 (178)
T cd02002 40 PGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVG 117 (178)
T ss_pred CCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHc
Confidence 456666544 3322 3667777665 45655554322 2333357888888899999999865542110
Q ss_pred ----------CCC-CCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 118 ----------GRG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 118 ----------~~~-~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
... .....|...+++.+--...++.+++++.+.+++|+ .. .||+.|++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~vi~v~ 177 (178)
T cd02002 118 PEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREAL----AE-GGPALIEVV 177 (178)
T ss_pred CCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHH----hC-CCCEEEEEE
Confidence 000 01235777777777666778888666655555554 33 489999864
No 182
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=93.06 E-value=1.4 Score=42.69 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHhcCC--CEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhh--H
Q 013746 15 DGNTLAAKSLSLFGA--THMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGC--V 89 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv--~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~--~ 89 (437)
..-..+.+.|.+.|+ +.+.-+.|.......-... ....+...|-. +.-+|.|...+. .++.+|++ |=|. .
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl--~~~~~~g~mG~-alpaAiGaklA~pd~~VV~i~--GDG~~~~ 102 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYF--LSHGLHTLHGR-AIAFATGAKLANPDLEVIVVG--GDGDLAS 102 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhc--ccCccchhhcc-HHHHHHHHHHHCCCCcEEEEe--CccHHHh
Confidence 345778889988877 3444444433332211111 12222234433 344577877775 44555544 4443 3
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccC-----------CCC-------CC-CCCcchhhhccCccceee---ecCCcCch
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKD-----------FGR-------GD-FQELDQVEAVKPFSKFAV---KAKDITEV 147 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~-----------~~~-------~~-~q~~d~~~~~~~~~k~~~---~v~~~~~~ 147 (437)
-.+.-+..|.+.++|+++|.-+..... .+. +. ...+|...+.+.+-...+ ++.+++++
T Consensus 103 mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 103 IGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred ccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 445678899999999999974432210 110 01 123566666666643222 57777777
Q ss_pred HHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 148 PKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 148 ~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+.+++|++ .+||++|++...
T Consensus 183 ~~ai~~A~~-----~~GpalIeV~~~ 203 (301)
T PRK05778 183 VELIKKAIS-----HKGFAFIDVLSP 203 (301)
T ss_pred HHHHHHHHh-----CCCCEEEEEcCC
Confidence 666666663 359999997655
No 183
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=93.06 E-value=2.5 Score=37.55 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=58.8
Q ss_pred HHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCCC-cEEEEecCCCccCCCC----CCCCCcchhhhccCcccee
Q 013746 65 YAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINTW-PIVMISGSCDQKDFGR----GDFQELDQVEAVKPFSKFA 138 (437)
Q Consensus 65 ~~A~gyar~tg~~~v~~~t~GpG~~n-~~~gi~~A~~~~~-Pvl~I~g~~~~~~~~~----~~~q~~d~~~~~~~~~k~~ 138 (437)
-+|.|.+.+..++.+|++ |=|... .+..+.+|...+. |+++|.-+........ ......|...+.+.+--..
T Consensus 49 p~AiGaala~~~~vv~i~--GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 126 (179)
T cd03372 49 SIGLGLALAQPRKVIVID--GDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDN 126 (179)
T ss_pred HHHHHHHhcCCCcEEEEE--CCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCe
Confidence 356666655445555544 555553 3678888888875 6877764443321111 0111356667777775555
Q ss_pred eecC-CcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 139 VKAK-DITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 139 ~~v~-~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.++. +++++.+ |++.+. +||..|++..|
T Consensus 127 ~~v~~~~~el~~----al~~a~---~gp~lIev~~~ 155 (179)
T cd03372 127 VATVASEEAFEK----AVEQAL---DGPSFIHVKIK 155 (179)
T ss_pred EEecCCHHHHHH----HHHHhc---CCCEEEEEEEc
Confidence 6676 5555544 444444 48999999876
No 184
>PRK05899 transketolase; Reviewed
Probab=93.06 E-value=0.65 Score=49.87 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=75.8
Q ss_pred CcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCC-CCCCCcchhh
Q 013746 52 VRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR-GDFQELDQVE 129 (437)
Q Consensus 52 i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~-~~~q~~d~~~ 129 (437)
=|++ ...-|++++.+|.|++...+...++. |..+=+.-+...+..+...+.|++++........-.. ..+|.++...
T Consensus 367 ~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~-t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia 445 (624)
T PRK05899 367 GRYIHYGVREFAMAAIANGLALHGGFIPFGG-TFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLA 445 (624)
T ss_pred CCeeeeChhHHHHHHHHHHHHHcCCCeEEEE-EcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHH
Confidence 3566 47889999999999998762333333 3344445566677777778899999975443322112 3478888888
Q ss_pred hccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 130 AVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+++.+.....- ..++.++..+++.| ....++|+||-+|..
T Consensus 446 ~~r~iP~~~V~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~ 486 (624)
T PRK05899 446 SLRAIPNLTVIRPADANETAAAWKYA----LERKDGPSALVLTRQ 486 (624)
T ss_pred HHHhCCCcEEEeCCCHHHHHHHHHHH----HHcCCCCEEEEEeCC
Confidence 99888654433 34445555555444 444359999999864
No 185
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.05 E-value=0.097 Score=55.68 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCHH--HHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i~~i 437 (437)
+.|+.|.||++|+|.+++. .+.+|++++|||.++-... .+..|..++-+++.|
T Consensus 175 ~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivI 233 (641)
T PLN02234 175 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVI 233 (641)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEE
Confidence 3588999999999988885 3568999999999875543 455556555555543
No 186
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=93.04 E-value=0.83 Score=48.54 Aligned_cols=153 Identities=13% Similarity=0.057 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHhcCCC--EEEec----CCCChHHHHHHHHh-CCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcC
Q 013746 13 QIDGNTLAAKSLSLFGAT--HMFGV----VGIPVTSLANRAVQ-LGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVS 84 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~--~vFg~----pG~~~~~l~~al~~-~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~ 84 (437)
.++-.+++.+.|.+..-+ .++.+ +|.... +.+.+ -+=|++ ...-|++++.+|.|.+...-+| +| .+.
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~---~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~P-vv-~~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGL---KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARP-VI-FVN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccccCc---HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeE-EE-Eee
Confidence 345566776666665332 34444 333222 22322 233555 5678999999999999854444 44 333
Q ss_pred ChhhHhhHHHH-HHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeec-CCcCchHHHHHHHHHHhhcCC
Q 013746 85 GPGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 85 GpG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~ 162 (437)
.+=+..++-=| .++-..+.||+++........ .-..+|.+.+.++++.+....... .++.++..++ +.|....
T Consensus 352 s~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l----~~a~~~~ 426 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAML----EWALTQH 426 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHH----HHHHhCC
Confidence 33333333322 224557899999975333222 223478888889999998665543 3444554444 4444433
Q ss_pred CceeEEEcCcchh
Q 013746 163 PGGCYLDLPTDVL 175 (437)
Q Consensus 163 ~GPv~l~iP~dv~ 175 (437)
+||+||-+|....
T Consensus 427 ~gP~~ir~~r~~~ 439 (581)
T PRK12315 427 EHPVAIRVPEHGV 439 (581)
T ss_pred CCcEEEEEcCCcc
Confidence 5999999997643
No 187
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=92.96 E-value=0.43 Score=41.56 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=62.1
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-------------CCCCCCcchhhh
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-------------RGDFQELDQVEA 130 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-------------~~~~q~~d~~~~ 130 (437)
-+|.|.+... +++.+|++-=| ++...+.++..|...+.|+++|.-+....... ....+..|...+
T Consensus 53 ~~a~Gaa~a~~~~~vv~~~GDG-~~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 131 (168)
T cd00568 53 PAAIGAALAAPDRPVVCIAGDG-GFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAAL 131 (168)
T ss_pred HHHHHHHHhCCCCcEEEEEcCc-HHhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHH
Confidence 3566766665 45555554333 23335688989999999999998655432110 011234577778
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++.+--...++.+++++.+.+++ +.+. .||+.|++.
T Consensus 132 a~~~G~~~~~v~~~~~l~~a~~~----a~~~-~~p~~i~v~ 167 (168)
T cd00568 132 AEAYGAKGVRVEDPEDLEAALAE----ALAA-GGPALIEVK 167 (168)
T ss_pred HHHCCCeEEEECCHHHHHHHHHH----HHhC-CCCEEEEEE
Confidence 88776666777776555555544 4443 489999874
No 188
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=92.84 E-value=0.092 Score=52.12 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCHH--HHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i~~i 437 (437)
..+.+|.++|.|+|++++. .++.++|++|||+..-..- .|-.|..+++|++.|
T Consensus 136 ~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfv 194 (362)
T PLN02269 136 GHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFV 194 (362)
T ss_pred cCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEE
Confidence 3477888888888887774 4678999999999443311 244456788887653
No 189
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=92.56 E-value=2.6 Score=43.43 Aligned_cols=150 Identities=9% Similarity=0.026 Sum_probs=89.5
Q ss_pred cCCcHHHHHHHHHHhcCC--CEEEecCCC-----ChHHHHHHHH-hC-CCcEe-eccchHHHHHHHHHHHhHhCCcEEEE
Q 013746 12 AQIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAV-QL-GVRFI-AFHNEQSAGYAASAYGYLTGKPGILL 81 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv--~~vFg~pG~-----~~~~l~~al~-~~-~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~ 81 (437)
.+++..+++.+.|.+..- +.||.+-.+ ..+.+.+.+. +- .-||+ ....|++.+.+|.|.|....||-|.+
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 345677777777776643 345555321 1121222222 22 24666 56789999999999999777776654
Q ss_pred EcCChhhHhhHHHHHH-hh--------hCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeec-CCcCchHHHH
Q 013746 82 TVSGPGCVHGLAGLSN-GM--------INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCV 151 (437)
Q Consensus 82 ~t~GpG~~n~~~gi~~-A~--------~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l 151 (437)
.++- -+..++--|.+ +. ..+.||++...+-+.. +.|.+|..+..++++.+....... .++.++..++
T Consensus 220 ~~~~-f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~--~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll 296 (464)
T PRK11892 220 MTFN-FAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAA--RVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLL 296 (464)
T ss_pred ehHH-HHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCC--CCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHH
Confidence 3221 12233333322 22 6679999986544333 256688888889999997655443 3555665555
Q ss_pred HHHHHHhhcCCCceeEEE
Q 013746 152 AQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 152 ~~A~~~a~~~~~GPv~l~ 169 (437)
+.|+ .. ++|||+-
T Consensus 297 ~~ai----~~-~~Pv~il 309 (464)
T PRK11892 297 KAAI----RD-PNPVIFL 309 (464)
T ss_pred HHHh----hC-CCcEEEE
Confidence 5554 33 4899983
No 190
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=92.53 E-value=0.11 Score=56.42 Aligned_cols=49 Identities=18% Similarity=0.048 Sum_probs=39.6
Q ss_pred CCCCCcchHHHHHHHhHhC-----------CCCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~-----------p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|+||-|++.|+|.+++. .+++|+||+|||-++=... .+..|.+++|.
T Consensus 187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLd 248 (885)
T TIGR00759 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLD 248 (885)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence 3589999999999988764 3578999999999876544 47777888884
No 191
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=92.34 E-value=5.4 Score=39.67 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHhcCCCE-EEecCCCChHHHHHHHHhC-----CCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCCh
Q 013746 14 IDGNTLAAKSLSLFGATH-MFGVVGIPVTSLANRAVQL-----GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGP 86 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~-vFg~pG~~~~~l~~al~~~-----~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~Gp 86 (437)
++-.+++-..++...=+. |..-.|.....++. +.+. .-+++..-.=..+.-+|.|.+... +++.+|+. |=
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~-~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p~r~Vv~i~--GD 248 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYE-LRDRIGQGHARDFLTVGSMGHASQIALGLALARPDQRVVCLD--GD 248 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-hhcccccCCCCceEeechhhhHHHHHHHHHHHCCCCCEEEEE--Ch
Confidence 788888888888777544 44445554444443 3322 344554322233445677777653 45656654 44
Q ss_pred hhHh-hHHHHHHhhhCCC-cEEEEecCCCccC-CCCC--CCCCcchhhhccCcc-ceeeecCCcCchHHHHHHHHHHhhc
Q 013746 87 GCVH-GLAGLSNGMINTW-PIVMISGSCDQKD-FGRG--DFQELDQVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 87 G~~n-~~~gi~~A~~~~~-Pvl~I~g~~~~~~-~~~~--~~q~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~ 160 (437)
|... .+..+..+...+. |+++|.-+..... .+.. .-...|...+++.+- .+..++.+++++.+.+++|. .
T Consensus 249 Gsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a~----~ 324 (361)
T TIGR03297 249 GAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVSTLEELETALTAAS----S 324 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHH----h
Confidence 4432 3456777766664 7888876655422 1110 112367777888776 45778888777766666654 3
Q ss_pred CCCceeEEEcCcch
Q 013746 161 GRPGGCYLDLPTDV 174 (437)
Q Consensus 161 ~~~GPv~l~iP~dv 174 (437)
. +||++|++..+.
T Consensus 325 ~-~gp~lIeV~v~~ 337 (361)
T TIGR03297 325 A-NGPRLIEVKVRP 337 (361)
T ss_pred C-CCcEEEEEEecC
Confidence 3 589999998764
No 192
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=92.14 E-value=1.1 Score=44.24 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=62.9
Q ss_pred EEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCCCC--CCCcchhhhccCccceeeecCCcCc--hHHH
Q 013746 78 GILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKFAVKAKDITE--VPKC 150 (437)
Q Consensus 78 ~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~~~~v~~~~~--~~~~ 150 (437)
.++++..|=|..|. ..++..|...++|+|+|.-+.......... ....|.....+.+--...+|+..+. +.+.
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a 224 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAV 224 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHH
Confidence 35555667777762 355777899999999999765311110101 1123556666777666777876654 4778
Q ss_pred HHHHHHHhhcCCCceeEEEcCcc
Q 013746 151 VAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 151 l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+|++.|...+ ||+.|++-..
T Consensus 225 ~~~A~~~a~~~~-gP~lIev~t~ 246 (341)
T TIGR03181 225 TKEAVERARSGG-GPTLIEAVTY 246 (341)
T ss_pred HHHHHHHHHcCC-CCEEEEEEee
Confidence 888999888764 8999998654
No 193
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.05 E-value=2.4 Score=40.54 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCC---EEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhh
Q 013746 16 GNTLAAKSLSLFGAT---HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHG 91 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~---~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~ 91 (437)
.-.+|-+.|.+.|++ .++...-+ ........ -....+...|-. +.-+|.|...+. .++.++++-=|-++.-.
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiG-c~~~~~~~--~~~~~~~~~~G~-alp~A~GaklA~Pd~~VV~i~GDG~~f~ig 93 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIG-CSSNLPEF--LNTYGIHGIHGR-VLPIATGVKWANPKLTVIGYGGDGDGYGIG 93 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCc-hhhhhhhh--ccCCCccccccc-HHHHHHHHHHHCCCCcEEEEECChHHHHcc
Confidence 346777888888763 44433322 22221111 123344666744 455678888876 45555555444456777
Q ss_pred HHHHHHhhhCCCcEEEEecCCCcc---------CCCC---------CCC-CCcchhhhccCcc-ceeeec--CCcCchHH
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQK---------DFGR---------GDF-QELDQVEAVKPFS-KFAVKA--KDITEVPK 149 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~---------~~~~---------~~~-q~~d~~~~~~~~~-k~~~~v--~~~~~~~~ 149 (437)
+..+..|.+.++|+++|.-+.... .... +.. ..+|...+.+.+- .|..+. .+++++
T Consensus 94 ~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l-- 171 (279)
T PRK11866 94 LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL-- 171 (279)
T ss_pred HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH--
Confidence 889999999999999996433211 1100 000 1136666666553 222222 344445
Q ss_pred HHHHHHHHhhcCCCceeEEEcCcc
Q 013746 150 CVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 150 ~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.++++.|... +||.+|++-..
T Consensus 172 --~~~l~~Al~~-~Gps~I~v~~p 192 (279)
T PRK11866 172 --KEIIKEAIKH-KGFSFIDVLSP 192 (279)
T ss_pred --HHHHHHHHhC-CCCEEEEEeCC
Confidence 4455555554 59999987644
No 194
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.98 E-value=0.66 Score=49.43 Aligned_cols=108 Identities=9% Similarity=0.125 Sum_probs=75.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC---C-CC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---G-DF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~---~-~~-q~~d~ 127 (437)
+.-+|.|.+.+. +|+.++++-=| ++.-.+..|..|.+.++|+++|.-+...... +. + .+ +..|.
T Consensus 440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY 518 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 444567777665 67878777666 4555578899999999999999865433210 00 0 12 23577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+.+.+--...++++++++...+++|+... .+.||+.|+++.|
T Consensus 519 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~--~~~~p~lIev~~~ 562 (588)
T PRK07525 519 AGIAEAMGAEGVVVDTQEELGPALKRAIDAQ--NEGKTTVIEIMCN 562 (588)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhcC--CCCCcEEEEEEec
Confidence 8888888777889999888877777776543 1248999999987
No 195
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=91.97 E-value=4.5 Score=44.93 Aligned_cols=171 Identities=15% Similarity=0.067 Sum_probs=91.9
Q ss_pred eccchHHHHH--HHHHHHhHh-CC--cEEEEEcCCh-hhHhhHHHHHHhhhCCCc-EEEEecCCCccCCCCC-CCCCcch
Q 013746 56 AFHNEQSAGY--AASAYGYLT-GK--PGILLTVSGP-GCVHGLAGLSNGMINTWP-IVMISGSCDQKDFGRG-DFQELDQ 127 (437)
Q Consensus 56 ~~~~E~~A~~--~A~gyar~t-g~--~~v~~~t~Gp-G~~n~~~gi~~A~~~~~P-vl~I~g~~~~~~~~~~-~~q~~d~ 127 (437)
....|+++.. +|.|-++.+ |. ...+. |..+ |+.=+.--+-.+-..+.+ +++++..-....-+.| .+|.+++
T Consensus 578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~-tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~es 656 (896)
T PRK13012 578 EGITEAGAISSWIAAATSYSVHGLPMLPFYI-YYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHS 656 (896)
T ss_pred cchhhhhhhHHHHHHHhhHHhcCCCcEEEEE-ehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHh
Confidence 5678999944 666666653 43 23333 3332 222222223233233333 5555433332332333 4788888
Q ss_pred hhhccCccc-eeeecCCcCchHHHHHHHHHHhhc-CCCceeEEEcCcchhccc-cchhHHHHHHHHhhhhcccccCCCCC
Q 013746 128 VEAVKPFSK-FAVKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPTDVLHQT-ISVSEAEKLLKEAESAKETVTQGGIV 204 (437)
Q Consensus 128 ~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~-~~~GPv~l~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (437)
..+++.+.. -.+...+..++...++.+++.+.. ...+|+||-+..+-..++ .++..
T Consensus 657 lal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~--------------------- 715 (896)
T PRK13012 657 HLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGA--------------------- 715 (896)
T ss_pred HHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccc---------------------
Confidence 889988753 455666667788888888876533 346899998865422111 11100
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
+..+.+-.-.|.+.+ .-+.|+|.|.--..+.++.+.|++.+|+.
T Consensus 716 ~~~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~ 761 (896)
T PRK13012 716 EEGILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVD 761 (896)
T ss_pred hhccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCC
Confidence 000111111122222 24788888876666777778888887774
No 196
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=91.95 E-value=0.16 Score=55.74 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=39.7
Q ss_pred CCCCCcchHHHHHHHhHhCC-----------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p-----------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|+||-|++.|+|.+++.. +++|+|++|||-++=... .+..|.+++|.
T Consensus 187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLd 248 (889)
T TIGR03186 187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLD 248 (889)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence 45999999999999988522 588999999999986544 47777888884
No 197
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.93 E-value=1.1 Score=41.80 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=56.2
Q ss_pred CCcEEEEEcCChhhH--hhHHHHHHhhhCCCcEEEEecCCCccCC-C-C-------C----------CCCCcchhhhccC
Q 013746 75 GKPGILLTVSGPGCV--HGLAGLSNGMINTWPIVMISGSCDQKDF-G-R-------G----------DFQELDQVEAVKP 133 (437)
Q Consensus 75 g~~~v~~~t~GpG~~--n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~-~-------~----------~~q~~d~~~~~~~ 133 (437)
+|+.+|++ |=|.. ..+..+.++...++|+++|.-+...... + + + .+...|...+.+.
T Consensus 87 ~~~Vv~i~--GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a 164 (237)
T cd02018 87 KKDVVVIG--GDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAAT 164 (237)
T ss_pred CCcEEEEe--CchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHH
Confidence 35555544 44422 2466777777899999999865442211 0 0 0 1223577777777
Q ss_pred ccceeee---cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 134 FSKFAVK---AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 134 ~~k~~~~---v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
+--...+ +.+++++...+++|+ ...+||++|++..|...
T Consensus 165 ~G~~~~~~~~v~~~~~l~~al~~al----~~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 165 HGCVYVARLSPALKKHFLKVVKEAI----SRTDGPTFIHAYTPCIT 206 (237)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHHH----hcCCCCEEEEEeCCCCC
Confidence 7554543 666666655555554 32358999999987543
No 198
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.78 E-value=4.1 Score=38.97 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCC--EEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 013746 16 GNTLAAKSLSLFGAT--HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~--~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~ 92 (437)
.-.++.++|.++|+. ..+-+.|........... ........|..+.. +|.|...+. .++.++++-=|-...+.+
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~--~~~~~~~~mG~alp-~AiGaklA~pd~~VVai~GDG~~~~iG~ 95 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYI--NVNGFHTLHGRAIP-AATAVKATNPELTVIAEGGDGDMYAEGG 95 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHc--cCCCCCcccccHHH-HHHHHHHHCCCCcEEEEECchHHhhCcH
Confidence 446778888888765 333334433332222111 12233344665554 456776665 466666553333233448
Q ss_pred HHHHHhhhCCCcEEEEecCCCcc-----------CCC-------CCCC-CCcchhhhccCcc-ceeee--cCCcCchHHH
Q 013746 93 AGLSNGMINTWPIVMISGSCDQK-----------DFG-------RGDF-QELDQVEAVKPFS-KFAVK--AKDITEVPKC 150 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~-----------~~~-------~~~~-q~~d~~~~~~~~~-k~~~~--v~~~~~~~~~ 150 (437)
..+..|...++||++|.-+.... ..+ .+.. ..+|...+.+.+- ++..+ +.+++++.+.
T Consensus 96 ~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~ 175 (280)
T PRK11869 96 NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEI 175 (280)
T ss_pred HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHH
Confidence 99999999999999997433211 000 0111 1246666666653 33332 5566666555
Q ss_pred HHHHHHHhhcCCCceeEEEcCcc
Q 013746 151 VAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 151 l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+|+ .. +||++|++-.-
T Consensus 176 i~~Al----~~-~Gp~lIeV~~p 193 (280)
T PRK11869 176 LKEAI----KH-KGLAIVDIFQP 193 (280)
T ss_pred HHHHH----hC-CCCEEEEEECC
Confidence 55555 43 59999987643
No 199
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=91.61 E-value=3 Score=39.80 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCC---CEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh--
Q 013746 17 NTLAAKSLSLFGA---THMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH-- 90 (437)
Q Consensus 17 ~~~i~~~L~~~Gv---~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n-- 90 (437)
-+.+++.|.+.++ +.++....+ ....+... -..+.+.+.|= .+.-+|.|...+. +++.++++ |=|..-
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvsdiG-c~~~~~~~--~~~~~~~~~~G-~alPaAiGaklA~Pdr~VV~i~--GDG~f~~~ 101 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVSGIG-CSGRFSSY--VNCNTVHTTHG-RAVAYATGIKLANPDKHVIVVS--GDGDGLAI 101 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCcC-HHHHhhcc--CCCCceeeccc-cHHHHHHHHHHHCCCCeEEEEE--CchHHHHh
Confidence 4667888888753 344333333 32222111 12334444443 4556678888875 45555544 545432
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCC-----------C-------CCC-CCCcchhhhccCccc-ee--eecCCcCchH
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDF-----------G-------RGD-FQELDQVEAVKPFSK-FA--VKAKDITEVP 148 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~-----------~-------~~~-~q~~d~~~~~~~~~k-~~--~~v~~~~~~~ 148 (437)
...-+..|.+.++|+++|.-+...... + .+. ...+|...+.+.+-- +. .++.+++++.
T Consensus 102 g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~ 181 (277)
T PRK09628 102 GGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLE 181 (277)
T ss_pred hHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHH
Confidence 234555689999999999743322110 0 001 112455666666543 32 5788888887
Q ss_pred HHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 149 KCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 149 ~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+++|++ . +||+.|++..+-
T Consensus 182 ~al~~Al~----~-~Gp~lIeV~~~c 202 (277)
T PRK09628 182 KLLVKGFS----H-KGFSFFDVFSNC 202 (277)
T ss_pred HHHHHHHh----C-CCCEEEEEcCCC
Confidence 77777654 3 599999987663
No 200
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=91.53 E-value=0.75 Score=44.56 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=65.0
Q ss_pred HHHHh---HhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEecCCCccCCC----CCCCCCcchhhhccCc--c
Q 013746 68 SAYGY---LTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFG----RGDFQELDQVEAVKPF--S 135 (437)
Q Consensus 68 ~gyar---~tg~~~v~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~----~~~~q~~d~~~~~~~~--~ 135 (437)
.|.++ ..|+..|+++..|=|+++ ..-++--|...+.|||+|+-+....... ......+ ....+.+ .
T Consensus 111 ~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~--~~~a~~~gip 188 (300)
T PF00676_consen 111 AGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDI--ADRAKGYGIP 188 (300)
T ss_dssp HHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTS--GGGGGGTTSE
T ss_pred cchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccch--hhhhhccCCc
Confidence 36666 457788888888877755 4457777888999999998543211100 0111111 2222333 3
Q ss_pred ceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 136 k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
-....=+++..+.+.+.+|++.++.++ ||+.|++=.-
T Consensus 189 ~~~VDG~D~~av~~a~~~A~~~~R~g~-gP~lie~~ty 225 (300)
T PF00676_consen 189 GIRVDGNDVEAVYEAAKEAVEYARAGK-GPVLIEAVTY 225 (300)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHHHTTT---EEEEEEE-
T ss_pred EEEECCEeHHHHHHHHHHHHHHHhcCC-CCEEEEEeec
Confidence 334444578889999999999999987 9999988643
No 201
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.51 E-value=0.74 Score=48.89 Aligned_cols=106 Identities=20% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhH---HHHHHhhhCCCcEEEEecCCCccCC-----------CC----C-----
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGL---AGLSNGMINTWPIVMISGSCDQKDF-----------GR----G----- 120 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~---~gi~~A~~~~~Pvl~I~g~~~~~~~-----------~~----~----- 120 (437)
-+|.|.+.++ +|+.+|++ |=|..+.- ..+..|.+.+.|+++|.-+...... +. +
T Consensus 437 p~aiGa~la~p~~~vv~i~--GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~ 514 (569)
T PRK08327 437 GAALGAKLATPDRLVIATV--GDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGT 514 (569)
T ss_pred HHHHHHhhcCCCCeEEEEe--cCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccc
Confidence 4556666654 56666665 44433332 2467788899999999876542111 00 0
Q ss_pred CC-CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 121 DF-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 121 ~~-q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+ ...|...+.+.+--...++.+++++.+.+++|++...++ .||+.|++..|
T Consensus 515 ~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~gp~liev~v~ 567 (569)
T PRK08327 515 DFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKG-RRSAVLDVIVD 567 (569)
T ss_pred cCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEcc
Confidence 11 235777788888778899999999999999988776554 48999999875
No 202
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=91.45 E-value=1.2 Score=44.02 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=62.5
Q ss_pred EEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCC--CCCCCCcchhhhccCccceeeecCCcC--chHHH
Q 013746 78 GILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDIT--EVPKC 150 (437)
Q Consensus 78 ~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~v~~~~--~~~~~ 150 (437)
.++++..|=|.++- .-++..|-..++|+|+|.-+....... .......|.....+.+--...+|+..+ .+.+.
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a 237 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREV 237 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHH
Confidence 45666678887772 235677888899999998765411100 001112356667777766677887665 45677
Q ss_pred HHHHHHHhhcCCCceeEEEcCc
Q 013746 151 VAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 151 l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+.+|++.|..++ ||+.|++-.
T Consensus 238 ~~~A~~~ar~~~-gP~lIev~t 258 (341)
T CHL00149 238 AKEAVERARQGD-GPTLIEALT 258 (341)
T ss_pred HHHHHHHHHhCC-CCEEEEEEE
Confidence 889999988764 899999865
No 203
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.33 E-value=0.86 Score=48.43 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=73.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC----------CCC--C-CC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~--~-~~-q~~d~ 127 (437)
+.-+|.|.+.+. +++.+|++-=| |+.=...-|..|.+.++|+++|.-+..... .++ . .+ ...|.
T Consensus 426 glpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (574)
T PRK07979 426 GLPAALGVKMALPEETVVCVTGDG-SIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDF 504 (574)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCH
Confidence 344566666665 45655554333 344445789999999999999987654211 011 1 11 23577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+-.+.+++++++++...+++|++... +.||+.|++..|-
T Consensus 505 ~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~--~~~p~lIeV~i~~ 549 (574)
T PRK07979 505 VRLAEAYGHVGIQISHPDELESKLSEALEQVR--NNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHHhccC--CCCcEEEEEEECC
Confidence 88899998889999999999888888876433 2489999998873
No 204
>PRK08611 pyruvate oxidase; Provisional
Probab=91.30 E-value=0.89 Score=48.34 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=73.3
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------CC----CCCCCcchhhh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GR----GDFQELDQVEA 130 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~~----~~~q~~d~~~~ 130 (437)
.-+|.|.+.+. +|+.+|++-=| |+.-.+..|..|...++|+++|.-+...... +. ..++..|...+
T Consensus 414 lpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~l 492 (576)
T PRK08611 414 LPGAIAAKIAFPDRQAIAICGDG-GFSMVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKF 492 (576)
T ss_pred HHHHHHHHHhCCCCcEEEEEccc-HHhhhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHH
Confidence 34566666654 67766665433 4444568899999999999999876543210 10 12345788888
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+-....++++++++.+.+++|++ . +||+.|++..|-
T Consensus 493 A~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIeV~vd~ 531 (576)
T PRK08611 493 AEACGGKGYRVEKAEELDPAFEEALA----Q-DKPVIIDVYVDP 531 (576)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 88888788999998888777777653 2 589999999874
No 205
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=91.28 E-value=4.9 Score=43.03 Aligned_cols=152 Identities=12% Similarity=0.007 Sum_probs=88.0
Q ss_pred CcHHHHHHHHHHhcCCC--EEEec----CCCChHHHHHHHHhCCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 013746 14 IDGNTLAAKSLSLFGAT--HMFGV----VGIPVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~--~vFg~----pG~~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~Gp 86 (437)
++-.+++.+.|.+..-+ .|+.+ +|+.....+.. +-.=|++ ...-|++++.+|.|.|...-||-+++ ..+
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~--~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~--fs~ 432 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFES--RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI--YSS 432 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHH--HccccccCCCcCHHHHHHHHHHHHHCCCeEEEEe--hHH
Confidence 56778888877766432 34433 34333322221 2234455 45679999999999999665654443 333
Q ss_pred hhHhhHHHH-HHhhhCCCcEEEEecCCCccCCCCC-CCCCcchhhhccCccceeeec-CCcCchHHHHHHHHHHhhcCCC
Q 013746 87 GCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 87 G~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
=+.-++--| .++...+.||+++.-.... .-..| .+|.+....+++.+....... .++.++. .+++.|.....
T Consensus 433 Fl~RA~DQI~~dva~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~----~~l~~a~~~~~ 507 (641)
T PLN02234 433 FMQRAYDQVVHDVDLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELF----NMVATAAAIDD 507 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCcc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHH----HHHHHHHhCCC
Confidence 333333333 2445789999888622221 11123 467777788888886544433 3444444 44454444445
Q ss_pred ceeEEEcCcch
Q 013746 164 GGCYLDLPTDV 174 (437)
Q Consensus 164 GPv~l~iP~dv 174 (437)
+|+++-.|...
T Consensus 508 ~Pv~ir~~R~~ 518 (641)
T PLN02234 508 RPSCFRYHRGN 518 (641)
T ss_pred CCEEEEeeccc
Confidence 89999999764
No 206
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=91.19 E-value=1.9 Score=40.83 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=74.5
Q ss_pred CcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH-hhHHHHHHhh-hCCCcEEEEecCCCccCCC-CCCCCCcch
Q 013746 52 VRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV-HGLAGLSNGM-INTWPIVMISGSCDQKDFG-RGDFQELDQ 127 (437)
Q Consensus 52 i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~-n~~~gi~~A~-~~~~Pvl~I~g~~~~~~~~-~~~~q~~d~ 127 (437)
=|++ ...-||+...+|.|.+....+|-++ |.++=++ -+.-=|.++- +++.||=++........-. -..+|.++-
T Consensus 49 dR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~ED 126 (312)
T COG3958 49 DRFFNVGIAEQDMVGTAAGLALAGKKPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALED 126 (312)
T ss_pred hhheecchHHHHHHHHHHHHHhcCCCceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHH
Confidence 3445 4567999999999999988887655 4444333 2222233322 3577777776655444332 246899988
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+++|.+.+.....+ .+.. ..+.++..+... +||+|+-+..+
T Consensus 127 iaimR~lpn~~V~~P--~D~v-~~~~i~~~~~~~-~GP~Y~Rl~R~ 168 (312)
T COG3958 127 IAIMRGLPNMTVIAP--ADAV-ETRAILDQIADY-KGPVYMRLGRG 168 (312)
T ss_pred HHHHhcCCCceEEcc--CcHH-HHHHHHHHHHhc-CCCEEEEecCC
Confidence 999999987665554 3333 455555555554 49999999984
No 207
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.03 E-value=0.32 Score=51.87 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=71.9
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC---C-CC--------
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---G-DF-------- 122 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~---~-~~-------- 122 (437)
-+|.|.+.+. .|+.++++-=| |+.=...-|..|.+.++|+++|.-+...... +. + .+
T Consensus 425 paaiGa~lA~pdr~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~ 503 (588)
T TIGR01504 425 PAALGVCAADPKRNVVALSGDY-DFQFMIEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEV 503 (588)
T ss_pred hHHHhhhhhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeeccccccccc
Confidence 3455555544 45655554322 3333457899999999999999876543210 00 0 01
Q ss_pred --CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 123 --QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 123 --q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
...|...+.+.+-.+..++++++++.+.+++|++..... .||+.|++..|-
T Consensus 504 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~-~~p~lIeV~i~~ 556 (588)
T TIGR01504 504 NGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEH-RVPVVVEVILER 556 (588)
T ss_pred cCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEecc
Confidence 136788889999888999999999888888887654322 489999998863
No 208
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.96 E-value=1.3 Score=46.98 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=73.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------CC----CCCCCcchhh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GR----GDFQELDQVE 129 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~~----~~~q~~d~~~ 129 (437)
+.-+|.|.+.+. +|+.+|++-=| ++.-.+..|..|.+.++|+++|.-+...... +. ..++..|...
T Consensus 413 ~lpaAiGa~la~p~r~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~ 491 (574)
T PRK09124 413 AMPQALGAQAAHPGRQVVALSGDG-GFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAA 491 (574)
T ss_pred hHHHHHHHHHhCCCCeEEEEecCc-HHhccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHH
Confidence 455667777654 56666555333 4555567899999999999999866542211 10 0134467778
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+.+.+-...+++++++++...+++|++ ..||+.|++..|-
T Consensus 492 lA~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIev~i~~ 531 (574)
T PRK09124 492 IAEACGITGIRVEKASELDGALQRAFA-----HDGPALVDVVTAK 531 (574)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence 888888888999998888777777753 3589999998873
No 209
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.87 E-value=2.4 Score=39.48 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=58.3
Q ss_pred CCcEEEEEcCChhh--HhhHHHHHHhhhCCCcEEEEecCCCccCC--CCCC----------------------CCCcchh
Q 013746 75 GKPGILLTVSGPGC--VHGLAGLSNGMINTWPIVMISGSCDQKDF--GRGD----------------------FQELDQV 128 (437)
Q Consensus 75 g~~~v~~~t~GpG~--~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--~~~~----------------------~q~~d~~ 128 (437)
.|+.||++ |=|. .-.+..|..|.+.++|+++|.-+...... ++.. ....|..
T Consensus 80 ~r~VV~i~--GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 157 (235)
T cd03376 80 DITVVAFA--GDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLP 157 (235)
T ss_pred CCeEEEEE--cCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHH
Confidence 46666555 4444 24467899999999999999865543221 0000 0114666
Q ss_pred hhccCcc-ce--eeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 129 EAVKPFS-KF--AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 129 ~~~~~~~-k~--~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
.+.+.+- ++ ..++.+++++.+.+++|++ . +||+.|++..+-+
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~-~gP~lIev~~~C~ 202 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALS----I-EGPAYIHILSPCP 202 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----C-CCCEEEEEECCCC
Confidence 6666663 33 2467777777777666664 2 5899999987743
No 210
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=90.82 E-value=0.97 Score=43.62 Aligned_cols=110 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCCCC--CCCcchhhhccCccce
Q 013746 66 AASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKF 137 (437)
Q Consensus 66 ~A~gyar~t---g~~~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~ 137 (437)
+|.|.+.+. +.-.++++..|=|.++. .-++..|...++|+|+|.-+.......... ....|...+.+.+--.
T Consensus 112 ~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 191 (293)
T cd02000 112 LAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIP 191 (293)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCC
Confidence 344554432 22345555667777653 357888999999999999765311111100 1123555666666555
Q ss_pred eeecCC--cCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 138 AVKAKD--ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 138 ~~~v~~--~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
..+++. ++++.+.+++|++.+..+. ||+.|++-.+-..
T Consensus 192 ~~~Vdg~d~~~v~~a~~~A~~~ar~~~-~P~lIev~~~r~~ 231 (293)
T cd02000 192 GIRVDGNDVLAVYEAAKEAVERARAGG-GPTLIEAVTYRLG 231 (293)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEeccC
Confidence 667754 4578888889998888764 8999999766443
No 211
>PRK08322 acetolactate synthase; Reviewed
Probab=90.44 E-value=1.4 Score=46.60 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=70.4
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC---CCCCCcchhhhc
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---GDFQELDQVEAV 131 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~---~~~q~~d~~~~~ 131 (437)
-+|.|.+.+. +|+.++++-=| ++.-.+..|..|.+.++|+++|.-+...... +. ..++..|...+.
T Consensus 413 paaiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~lA 491 (547)
T PRK08322 413 PSAIAAKLVHPDRKVLAVCGDG-GFMMNSQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKYA 491 (547)
T ss_pred HHHHHHHHhCCCCcEEEEEcch-hHhccHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHHH
Confidence 3566776664 56666665433 3343456788899999999999865543210 10 122346778888
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+.-+..++++++++.+.+++|+. ..||+.|++..|
T Consensus 492 ~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIev~v~ 528 (547)
T PRK08322 492 ESYGAKGYRVESADDLLPTLEEALA-----QPGVHVIDCPVD 528 (547)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 8888888999998888777777653 248999999876
No 212
>PRK07524 hypothetical protein; Provisional
Probab=90.41 E-value=1.5 Score=46.22 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=71.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC-C-------C-C---CCCCCcchhh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------G-R---GDFQELDQVE 129 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~-~-------~-~---~~~q~~d~~~ 129 (437)
+.-+|.|.+.+. +|+.+|++-=|--..| +..|..|...++|++++.-+..... . + . ..+...|...
T Consensus 412 ~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~ 490 (535)
T PRK07524 412 GLPAAIGAALGAPERPVVCLVGDGGLQFT-LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIA 490 (535)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchHHhhh-HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHH
Confidence 334567777764 6777776644433333 4568899999999999886653221 0 0 0 0123457788
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
+.+.+--+..++++++++.+.+++|++ . +||+.|++..|-+.
T Consensus 491 ~A~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~~~~~~ 532 (535)
T PRK07524 491 LARAFGCAAERVADLEQLQAALRAAFA----R-PGPTLIEVDQACWF 532 (535)
T ss_pred HHHHCCCcEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEECCccc
Confidence 888887778899887777666666553 3 58999999877543
No 213
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=90.38 E-value=1.3 Score=46.87 Aligned_cols=117 Identities=9% Similarity=0.168 Sum_probs=76.0
Q ss_pred CcEeeccc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------C
Q 013746 52 VRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G 118 (437)
Q Consensus 52 i~~i~~~~---E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~ 118 (437)
-+++.+.. =..+.-+|.|.+.+. +++.+|++-=|. +.-.+..|..|...+.|+++|.-+...... +
T Consensus 410 ~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGs-f~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~ 488 (564)
T PRK08155 410 RQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGS-LMMNIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYG 488 (564)
T ss_pred CeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcC
Confidence 45665432 122445677777665 567666654443 333467788999999999999866542211 0
Q ss_pred CC----CC-CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 119 RG----DF-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 119 ~~----~~-q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.. .+ ...|...+.+.+--+..++++++++...+++|+. ..||+.|++..|-
T Consensus 489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~~~~ 544 (564)
T PRK08155 489 QRVFAATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEAIN-----RPGPALIHVRIDA 544 (564)
T ss_pred CCeeeccCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 00 11 2467778888887778889988888776666653 2489999999863
No 214
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=90.14 E-value=0.33 Score=48.79 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCC----------CeeeCCCCCCC--CCC-CCCCc--cc-HH
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI----------PFLPTPMGKGL--LPD-THPLA--AT-AA 270 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~----------pv~tt~~gkg~--~~~-~hp~~--~G-~~ 270 (437)
..+++++++..|+|.+|+-|.|..-+++..+++||+|+|.- ||.-...|.-. +.| +=||- .- ..
T Consensus 295 ~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~eMde 374 (462)
T PRK09444 295 TAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDE 374 (462)
T ss_pred CHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceeEEeecCCCHHHHHhHHh
Confidence 45788999999999999999999888888888888887742 33322222110 001 00110 00 02
Q ss_pred HHhchhcCCEEEEEcCc
Q 013746 271 RSLAIGQCDVALVVGAR 287 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~ 287 (437)
.|.-+.+.|++|++|..
T Consensus 375 IN~~F~~tDvalVIGAN 391 (462)
T PRK09444 375 INDDFADTDTVLVIGAN 391 (462)
T ss_pred hccccccCCEEEEecCc
Confidence 34457789999999975
No 215
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=90.11 E-value=4.1 Score=45.11 Aligned_cols=122 Identities=16% Similarity=0.035 Sum_probs=81.5
Q ss_pred CcEe-eccchHHHHH--HHHHHHhH-hCCcEEEE-EcCCh-hhHhhHHHHHHhhhCCCcEEEEecCCCcc-CCCCC-CCC
Q 013746 52 VRFI-AFHNEQSAGY--AASAYGYL-TGKPGILL-TVSGP-GCVHGLAGLSNGMINTWPIVMISGSCDQK-DFGRG-DFQ 123 (437)
Q Consensus 52 i~~i-~~~~E~~A~~--~A~gyar~-tg~~~v~~-~t~Gp-G~~n~~~gi~~A~~~~~Pvl~I~g~~~~~-~~~~~-~~q 123 (437)
=+++ ....|+++.. +|.|-++. .|++-+.+ .+..+ |+.=+.--|-.+-..+.++.+|.+..... .-+.| .+|
T Consensus 560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq 639 (889)
T TIGR03186 560 GQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ 639 (889)
T ss_pred CcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc
Confidence 3444 5788999987 88888885 45532332 33333 23444455666667788888888777663 33323 478
Q ss_pred CcchhhhccCccc-eeeecCCcCchHHHHHHHHHHhhcC-CCceeEEEcCcc
Q 013746 124 ELDQVEAVKPFSK-FAVKAKDITEVPKCVAQVLERAVSG-RPGGCYLDLPTD 173 (437)
Q Consensus 124 ~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~-~~GPv~l~iP~d 173 (437)
.+....+++.+.. -.+...++.++...++.+++.+... ..||+||-+...
T Consensus 640 ~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~ 691 (889)
T TIGR03186 640 DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNE 691 (889)
T ss_pred chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 8877888888753 3555667778888888888855554 469999998765
No 216
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=90.10 E-value=0.9 Score=47.85 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=72.3
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCC--C-CCCCcchhh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR--G-DFQELDQVE 129 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~--~-~~q~~d~~~ 129 (437)
+.-+|.|.+.+. +++.++++-=| ++.-....|..|.+.++|+++|.-+..... .++ + .+...|...
T Consensus 413 ~lpaaiGa~la~~~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~ 491 (539)
T TIGR02418 413 ALPWAIGAALVRPNTKVVSVSGDG-GFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVK 491 (539)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-hhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 344567766654 56766665333 334445789999999999999986654211 010 0 223468888
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+.+-.+..++++++++.+.+++|+. ..||..|++..|
T Consensus 492 lA~a~G~~~~~V~~~~eL~~al~~a~~-----~~~p~lIev~v~ 530 (539)
T TIGR02418 492 YAESFGAKGLRVESPDQLEPTLRQAME-----VEGPVVVDIPVD 530 (539)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 999998889999998888777777753 248999999876
No 217
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.07 E-value=1.6 Score=46.53 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=70.7
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------C-C--C-CCCCcchhhhcc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------G-R--G-DFQELDQVEAVK 132 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~-~--~-~~q~~d~~~~~~ 132 (437)
+|.|.+.+. +|+.+|++-=| ++.-.+..+..|...++|+++|.-+...... + . + .++..|...+.+
T Consensus 416 aAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~ 494 (578)
T PRK06546 416 HAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIAA 494 (578)
T ss_pred HHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHHHH
Confidence 677777764 46666655322 2333456789999999999999865443211 1 0 0 134578888888
Q ss_pred CccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 133 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+-....++++++++.+.+++|++ .+||+.|++..|-
T Consensus 495 a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIev~~~~ 531 (578)
T PRK06546 495 ALGIHAVRVEDPKDVRGALREAFA-----HPGPALVDVVTDP 531 (578)
T ss_pred HCCCeeEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 888788899998888777777654 3599999998763
No 218
>PRK08617 acetolactate synthase; Reviewed
Probab=89.96 E-value=1.6 Score=46.15 Aligned_cols=102 Identities=24% Similarity=0.339 Sum_probs=70.6
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC--C-CCCCcchhhhcc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR--G-DFQELDQVEAVK 132 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~--~-~~q~~d~~~~~~ 132 (437)
+|.|.+.+. +|+.+|++-=| |+.-.+..|..|...++|+++|.-+...... +. + .++..|...+.+
T Consensus 422 aaiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~ 500 (552)
T PRK08617 422 WAIAAALVRPGKKVVSVSGDG-GFLFSAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAE 500 (552)
T ss_pred HHHhhHhhcCCCcEEEEEech-HHhhhHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHH
Confidence 566666554 67766665333 3444457899999999999988765542210 00 0 123567888888
Q ss_pred CccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 133 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+....+++++++++.+.+++|++ ..||..|++..|
T Consensus 501 a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~liev~~~ 536 (552)
T PRK08617 501 SFGAKGLRVTSPDELEPVLREALA-----TDGPVVIDIPVD 536 (552)
T ss_pred HCCCeEEEECCHHHHHHHHHHHHh-----CCCcEEEEEEec
Confidence 888888999998888888877763 348999999876
No 219
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=89.81 E-value=1.3 Score=43.22 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=67.0
Q ss_pred HHHHHhHh---CCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEecCCCccCCCCC--CCCCcchhhhccCcccee
Q 013746 67 ASAYGYLT---GKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRG--DFQELDQVEAVKPFSKFA 138 (437)
Q Consensus 67 A~gyar~t---g~~~v~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~--~~q~~d~~~~~~~~~k~~ 138 (437)
|.|.+.+. +...++++..|=|.++ ...++.-|-..++|+|+|.-+......... .....|...+.+.+--..
T Consensus 119 AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~ 198 (315)
T TIGR03182 119 ATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPG 198 (315)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCE
Confidence 45555543 2334556666777765 224566677889999999876521111100 011234555666665556
Q ss_pred eecCC--cCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 139 VKAKD--ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 139 ~~v~~--~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
.+|+. +.++.+.+.+|++.+..++ ||+.|++-..=+
T Consensus 199 ~~Vdg~d~~av~~a~~~A~~~ar~~~-gP~lIe~~t~R~ 236 (315)
T TIGR03182 199 ERVDGMDVLAVREAAKEAVERARSGK-GPILLEMKTYRF 236 (315)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeCCcC
Confidence 77765 4567888888998888764 899999976543
No 220
>PRK08266 hypothetical protein; Provisional
Probab=89.81 E-value=1.9 Score=45.49 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=71.3
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------C-CC---CCCCCcchhhh
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------F-GR---GDFQELDQVEA 130 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~-~~---~~~q~~d~~~~ 130 (437)
-+|.|.+... +++.+|++-=| ++.-....|..|...++|+++|.-+..... . ++ ..+...|...+
T Consensus 409 p~aiGa~la~p~~~vv~v~GDG-~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~l 487 (542)
T PRK08266 409 PTALGAKVANPDRPVVSITGDG-GFMFGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKL 487 (542)
T ss_pred HHHHHHHHhCCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHH
Confidence 3566776654 57777766545 455556889999999999999876554221 0 11 11234677888
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+.....++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 488 a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~i~~ 526 (542)
T PRK08266 488 AESFGVAAFRVDSPEELRAALEAAL----AH-GGPVLIEVPVPR 526 (542)
T ss_pred HHHcCCeEEEeCCHHHHHHHHHHHH----hC-CCcEEEEEEecC
Confidence 8888888899999877766666654 32 489999998763
No 221
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=89.80 E-value=1.5 Score=46.19 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=68.3
Q ss_pred HHHHHHhHhCCcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCccCCC--------CCCCCCcchhhhccCccc
Q 013746 66 AASAYGYLTGKPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQKDFG--------RGDFQELDQVEAVKPFSK 136 (437)
Q Consensus 66 ~A~gyar~tg~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~q~~d~~~~~~~~~k 136 (437)
+|.|.+.+..+..+++ .|=| +.=.+.-|..|.+.++|+++|.-+......- ...+...|...+.+.+-.
T Consensus 411 aaiGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~ 488 (535)
T TIGR03394 411 AGIGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGG 488 (535)
T ss_pred HHHHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHcCC
Confidence 3444455554555654 3444 3444578999999999999998765432210 112234577778888888
Q ss_pred eeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 137 FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 137 ~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+..++++++++...+++|++ .+.+|+.|++..|
T Consensus 489 ~~~~v~~~~eL~~al~~a~~----~~~~p~lIev~i~ 521 (535)
T TIGR03394 489 DGVRVRTRAELAAALDKAFA----TRGRFQLIEAMLP 521 (535)
T ss_pred CceEeCCHHHHHHHHHHHHh----cCCCeEEEEEECC
Confidence 88999998888887777764 2335889999876
No 222
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.79 E-value=4 Score=39.36 Aligned_cols=116 Identities=15% Similarity=0.059 Sum_probs=68.5
Q ss_pred CCcEeeccchHHHHHHHHHHHhHh-----CCcEEEEEcCChhhH--hhHHHHHHhhhCCCcEEEEecC---------CCc
Q 013746 51 GVRFIAFHNEQSAGYAASAYGYLT-----GKPGILLTVSGPGCV--HGLAGLSNGMINTWPIVMISGS---------CDQ 114 (437)
Q Consensus 51 ~i~~i~~~~E~~A~~~A~gyar~t-----g~~~v~~~t~GpG~~--n~~~gi~~A~~~~~Pvl~I~g~---------~~~ 114 (437)
++.++...++.+++. |.|.+++. ++..|+ +..|=|.+ ..+.++..|...+.|+++|.=+ +.+
T Consensus 63 ~~~~i~~~~G~~~~~-A~G~a~A~~~~~~~~~~Vv-a~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S 140 (300)
T PRK11864 63 TVPVLHTAFAATAAV-ASGIEEALKARGEKGVIVV-GWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRS 140 (300)
T ss_pred cccceeehhhChHHH-HHHHHHHHHhhCCCCcEEE-EEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCC
Confidence 567788888887765 46777763 333333 23444433 3357899999999999999633 222
Q ss_pred cCCCCC----------CCCCcchhhhccCc-cceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 115 KDFGRG----------DFQELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 115 ~~~~~~----------~~q~~d~~~~~~~~-~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
.....+ .....|...++..+ ..|..++.. .+. ..+.++++.|... +||.+|.+-
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~~-~~~~~~i~~A~~~-~Gps~I~~~ 205 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AYP-EDFIRKLKKAKEI-RGFKFIHLL 205 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CCH-HHHHHHHHHHHhC-CCCEEEEEe
Confidence 221112 12335777766655 346665543 332 3345566666654 599999764
No 223
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.67 E-value=1.4 Score=46.76 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=71.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC----------CCC---CCC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR---GDF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~---~~~-q~~d~ 127 (437)
+.-+|.|.+.+. +++.+|++-=| ++.-.+..|..|...++|+++|.-+..... .++ ..+ ...|.
T Consensus 426 ~lp~aiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (574)
T PRK06882 426 GLPAAIGVKFAHPEATVVCVTGDG-SIQMNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDF 504 (574)
T ss_pred hhHHHHHHHhhcCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCH
Confidence 444567776655 45555555333 333345789999999999999987655221 011 111 13567
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+--...++++++++...+++|+.. +.+|+.|++..|-
T Consensus 505 ~~la~a~G~~~~~v~~~~eL~~al~~a~~~----~~~p~liev~i~~ 547 (574)
T PRK06882 505 AKLAEAYGHVGIQIDTPDELEEKLTQAFSI----KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHHHCCCeEEEeCCHHHHHHHHHHHHhc----CCCcEEEEEEecC
Confidence 778888877888999988887777777653 3489999999874
No 224
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=89.56 E-value=2.2 Score=45.40 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=74.4
Q ss_pred CCcEeeccch---HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------C
Q 013746 51 GVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------F 117 (437)
Q Consensus 51 ~i~~i~~~~E---~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~ 117 (437)
+.+++....= ..+.-+|.|.+.+. +|+.+|++-=| ++.-....+..|...++|+++|.-+..... .
T Consensus 427 ~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~ 505 (578)
T PRK06112 427 GMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDG-GFAHVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKF 505 (578)
T ss_pred CceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcch-HHHhHHHHHHHHHHhCCCeEEEEEeCCccCCEEecccccc
Confidence 3456654431 23445677777665 46666665333 333346788889999999999987654211 0
Q ss_pred CC----CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 118 GR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 118 ~~----~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+. ..+...|...+.+.+--...++++++++.+.+++|++ .+||+.|++..|
T Consensus 506 ~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIev~~~ 560 (578)
T PRK06112 506 GTHTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMA-----APGPTLIEVITD 560 (578)
T ss_pred CCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEcC
Confidence 00 0122456777888887777888888877666666653 358999999876
No 225
>PRK07064 hypothetical protein; Provisional
Probab=89.35 E-value=1.4 Score=46.35 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=68.2
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------C----CCCCCCcchhhhc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G----RGDFQELDQVEAV 131 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~----~~~~q~~d~~~~~ 131 (437)
+|.|.+-+. .|+.++++-=| ++.-.+..|..|.+.++|+++|.-+...... + ...++..|...+.
T Consensus 413 aAiGa~lA~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA 491 (544)
T PRK07064 413 MAIGAALAGPGRKTVGLVGDG-GLMLNLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLA 491 (544)
T ss_pred hhhhhhhhCcCCcEEEEEcch-HhhhhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHH
Confidence 445555443 45655554333 4555567899999999999999765442210 1 0123345777888
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+--...++++++++.+.+++|++ ..||+.|++..|
T Consensus 492 ~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIeV~~~ 528 (544)
T PRK07064 492 ASLGLPHWRVTSADDFEAVLREALA-----KEGPVLVEVDML 528 (544)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHc-----CCCCEEEEEEcc
Confidence 8887778899998888777777663 348999999976
No 226
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=89.10 E-value=1.7 Score=44.17 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=60.5
Q ss_pred cEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCC-CCCC--CcchhhhccCccceeeecCCc--CchH
Q 013746 77 PGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR-GDFQ--ELDQVEAVKPFSKFAVKAKDI--TEVP 148 (437)
Q Consensus 77 ~~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~-~~~q--~~d~~~~~~~~~k~~~~v~~~--~~~~ 148 (437)
..++++..|=|.+|- .-++--|-..++|+|++.-+... .++. ...| ..|.....+.+--...+|+.. ..+.
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~y-aig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~ 301 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVR 301 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCE-eecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHH
Confidence 346667778887763 33677888999999999965421 1111 0011 224445556655556666543 3567
Q ss_pred HHHHHHHHHhhcCCCceeEEEcCc
Q 013746 149 KCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 149 ~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+.+.+|++.|..++ ||+.|++-.
T Consensus 302 ~a~~~A~~~Ar~g~-gP~LIe~~t 324 (433)
T PLN02374 302 EVAKEAIERARRGE-GPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEE
Confidence 77889999999875 899998754
No 227
>PRK06154 hypothetical protein; Provisional
Probab=89.08 E-value=1.5 Score=46.51 Aligned_cols=108 Identities=10% Similarity=-0.045 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------C-CC--CCCCcchhhh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------G-RG--DFQELDQVEA 130 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~-~~--~~q~~d~~~~ 130 (437)
+.-+|.|.+.+. +|+.+|++-=| |+.=.+..|..|.+.++|+++|.-+...... + .. .....|...+
T Consensus 436 glpaaiGa~la~p~r~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~l 514 (565)
T PRK06154 436 GLGLAMGAKLARPDALVINLWGDA-AFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAI 514 (565)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHH
Confidence 344556666654 56766665322 3333446899999999999999876543210 0 00 0012477788
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+.+-....++++++++...+++|+.... ..+|+.|++..|
T Consensus 515 A~a~G~~g~~V~~~~el~~al~~a~~~~~--~~~p~lIev~v~ 555 (565)
T PRK06154 515 ARALGGYGERVEDPEMLVPALLRALRKVK--EGTPALLEVITS 555 (565)
T ss_pred HHHCCCeEEEECCHHHHHHHHHHHHhhcc--CCCeEEEEEEeC
Confidence 88888889999999999888888876432 247999999865
No 228
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=88.97 E-value=2.2 Score=45.32 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=70.2
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-------CCC-----CCCCcchhhhc
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-------GRG-----DFQELDQVEAV 131 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-------~~~-----~~q~~d~~~~~ 131 (437)
-+|.|.+.+. +|+.++++-=| |+.-.+..|..+...++|+++|.-+...... ..+ .+...|...+.
T Consensus 415 paAiGa~la~p~r~Vv~i~GDG-sf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA 493 (575)
T TIGR02720 415 PGAIAAKLNYPDRQVFNLAGDG-AFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIA 493 (575)
T ss_pred HHHHHHHHhCCCCcEEEEEccc-HHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHH
Confidence 3455544444 46666655333 3444466899999999999999765443211 001 13346778888
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+.+--...++++++++.+.+++|++ . . ..||+.|++..|-
T Consensus 494 ~a~G~~~~~v~~~~el~~al~~a~~-~-~-~~~p~liev~i~~ 533 (575)
T TIGR02720 494 EGVGAVGFRVNKIEQLPAVFEQAKA-I-K-QGKPVLIDAKITG 533 (575)
T ss_pred HHCCCEEEEeCCHHHHHHHHHHHHh-h-C-CCCcEEEEEEeCC
Confidence 8887778899998888888877775 2 2 2489999998764
No 229
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=88.81 E-value=3 Score=40.02 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=61.4
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCcc-----------CCCC-------CCC-
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK-----------DFGR-------GDF- 122 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~-----------~~~~-------~~~- 122 (437)
+.-+|.|...+. .++.+|++-=|-++.-.+..+..|.+.++|+++|.-+.... ..+. +..
T Consensus 74 alpaAiGaklA~Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~ 153 (286)
T PRK11867 74 ALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIE 153 (286)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCC
Confidence 334567777765 45555555444345556778999999999999997433211 0110 011
Q ss_pred CCcchhhhccCccceee---ecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 123 q~~d~~~~~~~~~k~~~---~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+|...+...+-.... .+.+++++.+.+++|+ .. +||++|++..+-
T Consensus 154 ~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al----~~-~Gp~lIev~~~C 203 (286)
T PRK11867 154 PPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI----NH-KGFSFVEILQPC 203 (286)
T ss_pred CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH----hC-CCCEEEEEeCCC
Confidence 12456666555532222 2445555655555554 43 599999998763
No 230
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=88.69 E-value=0.29 Score=49.63 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
..++++++|..|+|.+|+-|.|..-+++..++++|++.|
T Consensus 296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L 334 (463)
T PF02233_consen 296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLL 334 (463)
T ss_dssp SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999998888887777777766
No 231
>PRK11269 glyoxylate carboligase; Provisional
Probab=88.60 E-value=1.5 Score=46.79 Aligned_cols=109 Identities=10% Similarity=-0.004 Sum_probs=74.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCC---C-CC------
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---G-DF------ 122 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~---~-~~------ 122 (437)
+.-+|.|.+.+. .|+.+|++- --|+.-....|..|.+.++|+++|.-+..... ... + .+
T Consensus 424 glpaAiGa~la~p~r~Vv~i~G-DG~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 502 (591)
T PRK11269 424 TIPAALGVRAADPDRNVVALSG-DYDFQFLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSP 502 (591)
T ss_pred hhhhHHhhhhhCCCCcEEEEEc-cchhhcCHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccc
Confidence 445667777665 566666543 33444556789999999999999986654211 000 0 01
Q ss_pred ----CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 123 ----QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 123 ----q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
...|...+.+.+-.+..++++++++...+++|++.... ..||+.|++..|
T Consensus 503 ~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~-~~gp~lieV~v~ 556 (591)
T PRK11269 503 ELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAE-FRVPVVVEVILE 556 (591)
T ss_pred cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccc-CCCcEEEEEEec
Confidence 12577788888888899999999998888888765433 348999999876
No 232
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=88.55 E-value=2.2 Score=40.97 Aligned_cols=147 Identities=10% Similarity=-0.003 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCC---EEEe-cCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhh
Q 013746 17 NTLAAKSLSLFGAT---HMFG-VVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHG 91 (437)
Q Consensus 17 ~~~i~~~L~~~Gv~---~vFg-~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~ 91 (437)
-.++.++|.++|++ .++. =.|.+.. .-..+ ......+.| ..+.-+|.|...+. .++.+|++-=|-...-.
T Consensus 13 ~~~~~~a~~~l~~~p~d~iivsdiGc~~~-~~~~l---~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~GDG~f~~mg 87 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVVSGIGCSAK-TPHYV---NVNGFHGLH-GRALPVATGIKLANPHLKVIVVGGDGDLYGIG 87 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCcccc-cCCeE---ecCCccccc-ccHHHHHHHHHHHCCCCcEEEEeCchHHHhcc
Confidence 35677888888773 2222 2222210 00000 011222334 33555678887775 56666655333322344
Q ss_pred HHHHHHhhhCCCcEEEEecCCCc-----------cCCCC-------CCC---CCcchhhhccCccceeee-cCCcCchHH
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQ-----------KDFGR-------GDF---QELDQVEAVKPFSKFAVK-AKDITEVPK 149 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~-----------~~~~~-------~~~---q~~d~~~~~~~~~k~~~~-v~~~~~~~~ 149 (437)
+..+..|.+.++|+++|.-+... ...|. +.. ...+...+...+...+.. ..+++++.+
T Consensus 88 ~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ 167 (287)
T TIGR02177 88 GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVAHLKE 167 (287)
T ss_pred HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHHHHHH
Confidence 66799999999999999743221 11110 111 123445556665433333 456666655
Q ss_pred HHHHHHHHhhcCCCceeEEEcCcc
Q 013746 150 CVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 150 ~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+++|+ .. +||++|++...
T Consensus 168 ai~~Al----~~-~GpslIeV~~p 186 (287)
T TIGR02177 168 IIKEAI----NH-KGYALVDILQP 186 (287)
T ss_pred HHHHHH----hC-CCCEEEEEeCC
Confidence 555554 43 59999988755
No 233
>PRK05858 hypothetical protein; Provisional
Probab=88.49 E-value=1.6 Score=46.11 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CCC---CC-CCcchhhhc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG---DF-QELDQVEAV 131 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~~---~~-q~~d~~~~~ 131 (437)
+|.|.+.+. +|+.+|++-=| |+.-.+.-|..|-+.++|+++|.-+...... +.. .+ ...|...+.
T Consensus 415 ~aiGa~la~p~r~vv~i~GDG-~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA 493 (542)
T PRK05858 415 YALAARLARPSRQVVLLQGDG-AFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVV 493 (542)
T ss_pred HHHHHHHhCCCCcEEEEEcCc-hhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHH
Confidence 344444433 56766665333 3444567888888999999999866533211 100 11 346778888
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+-....++++++++.+.+++|++ ..||+.|++..|
T Consensus 494 ~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIev~~~ 530 (542)
T PRK05858 494 RALGGHGELVTVPAELGPALERAFA-----SGVPYLVNVLTD 530 (542)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEEEC
Confidence 8888888999999999888888765 248999999986
No 234
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.42 E-value=2.2 Score=45.32 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=72.8
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC----------CCC--C-CCC-Ccchh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DFQ-ELDQV 128 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~--~-~~q-~~d~~ 128 (437)
.-+|.|.+.+. +|+.+|++-=| |+.-.+..|..|.+.++|+++|.-+..... .++ + .++ ..|..
T Consensus 429 lpaAiGa~la~p~r~Vv~i~GDG-~f~m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~ 507 (574)
T PRK06466 429 LPAAMGVKLAFPDQDVACVTGEG-SIQMNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFV 507 (574)
T ss_pred HHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHH
Confidence 44566766664 56766665433 344445789999999999999987665321 011 1 112 35777
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+.+.+-.+..++++++++...+++|+.. +.||+.|++..|
T Consensus 508 ~lA~a~G~~~~~v~~~~el~~al~~a~~~----~~~p~lIev~i~ 548 (574)
T PRK06466 508 KLAEAYGHVGIRITDLKDLKPKLEEAFAM----KDRLVFIDIYVD 548 (574)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEeC
Confidence 88888888899999998888888777642 358999998876
No 235
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=88.25 E-value=17 Score=32.52 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=60.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCC-cEEEEecCCCccC-CCC--CCCCCcchhhhccCcc-
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTW-PIVMISGSCDQKD-FGR--GDFQELDQVEAVKPFS- 135 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~-n~~~gi~~A~~~~~-Pvl~I~g~~~~~~-~~~--~~~q~~d~~~~~~~~~- 135 (437)
+.-+|.|.+.+. +++.+|++ |=|.. -.+..+..+...+. |+++|.-+..... .+. ......|...+.+.+-
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~--GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~ 130 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID--GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGY 130 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe--CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCC
Confidence 334556666554 45666655 43433 34567888877776 6777775543321 110 0112356667777764
Q ss_pred ceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 136 k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
++..++.+++++.+.+++|+ .. ++|+.|++..|-
T Consensus 131 ~~~~~v~~~~el~~al~~a~----~~-~~p~lIev~~~~ 164 (188)
T cd03371 131 RAVYEVPSLEELVAALAKAL----AA-DGPAFIEVKVRP 164 (188)
T ss_pred ceEEecCCHHHHHHHHHHHH----hC-CCCEEEEEEecC
Confidence 34457777777766666654 33 489999988763
No 236
>PLN02470 acetolactate synthase
Probab=88.24 E-value=2.1 Score=45.59 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=72.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCCC----CCC-----
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGRG----DFQ----- 123 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~~----~~q----- 123 (437)
+.-+|.|.+.+. +|+.+|++-=| ++.=....|..|...++|+++|.-+..... .+.. .+.
T Consensus 431 glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~ 509 (585)
T PLN02470 431 GLPAAIGAAAANPDAIVVDIDGDG-SFIMNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAE 509 (585)
T ss_pred hHHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccccc
Confidence 555677777766 56766665333 333345789999999999999987654320 0000 010
Q ss_pred ---CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 124 ---ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 124 ---~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..|...+.+.+--...++++++++.+.+++|+. ..||+.|+++.|-
T Consensus 510 ~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lieV~i~~ 558 (585)
T PLN02470 510 AEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLD-----TPGPYLLDVIVPH 558 (585)
T ss_pred cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 157777888887778999998888777777764 2489999999873
No 237
>PLN02573 pyruvate decarboxylase
Probab=88.12 E-value=2.1 Score=45.53 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=68.4
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-----C--CCCCCCcchhhhccCcc-
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-----G--RGDFQELDQVEAVKPFS- 135 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-----~--~~~~q~~d~~~~~~~~~- 135 (437)
-+|.|.+.+. +|+.+|++-= -|+.=.+.-|..|.+.++|+++|.-+...... . ....+..|...+.+.+-
T Consensus 435 paaiGa~lA~p~r~vv~i~GD-G~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~ 513 (578)
T PLN02573 435 GATLGYAQAAPDKRVIACIGD-GSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHN 513 (578)
T ss_pred hHHHHHHHhCCCCceEEEEec-cHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhcC
Confidence 3455665554 4666665532 23444447899999999999999876543211 0 01123356677777763
Q ss_pred ----ceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 136 ----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 136 ----k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+..++++++++.+.+++|+.. .+.||..|++..|
T Consensus 514 ~~g~~~~~~V~~~~eL~~al~~a~~~---~~~~p~lieV~v~ 552 (578)
T PLN02573 514 GEGKCWTAKVRTEEELIEAIATATGE---KKDCLCFIEVIVH 552 (578)
T ss_pred cCCceeEEEecCHHHHHHHHHHHHhh---CCCCcEEEEEEcC
Confidence 5678999988887777777642 2358999999986
No 238
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.07 E-value=5.6 Score=38.39 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred CCcEeeccchHHHHHHHHHHHhHh---CC--cEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCC---------ccC
Q 013746 51 GVRFIAFHNEQSAGYAASAYGYLT---GK--PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD---------QKD 116 (437)
Q Consensus 51 ~i~~i~~~~E~~A~~~A~gyar~t---g~--~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~---------~~~ 116 (437)
+..++...+|.++++ |.|.+++. ++ ..+|+.-=|-.....+.++..|...+.++++|.=+.. +..
T Consensus 63 ~~~~~~~~fg~~~a~-a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~ 141 (299)
T PRK11865 63 NVPWIHVAFENAAAV-ASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGS 141 (299)
T ss_pred ccccchhhhcchHHH-HHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCC
Confidence 567888888888876 56777763 33 4444443333344557889999999999999963322 211
Q ss_pred C-----------CCC----CCCCcchhhhccCc-cceeeec--CCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 117 F-----------GRG----DFQELDQVEAVKPF-SKFAVKA--KDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 117 ~-----------~~~----~~q~~d~~~~~~~~-~k~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
. |+. .....|...++... +.|..++ .++.++ .++++.|... +||.+|++-
T Consensus 142 Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l----~~~i~~A~~~-~Gps~I~v~ 209 (299)
T PRK11865 142 TPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDF----MEKVKKAKEV-EGPAYIQVL 209 (299)
T ss_pred CCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHH----HHHHHHHHhC-CCCEEEEEE
Confidence 1 110 11235666665433 3455444 344444 4555555554 499999764
No 239
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=88.02 E-value=2.7 Score=44.96 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=70.1
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhC-----CCcEEEEecCCCccC---------CCCC------CCCC
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMIN-----TWPIVMISGSCDQKD---------FGRG------DFQE 124 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~-----~~Pvl~I~g~~~~~~---------~~~~------~~q~ 124 (437)
+|.|.+.+. +|+.+|++-=|-=..|.+.-|..|.+. ++|+++|.-+..... .+.. .+..
T Consensus 423 aaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~ 502 (597)
T PRK08273 423 YAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPD 502 (597)
T ss_pred HHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCC
Confidence 556666654 567666654333223334678888888 899999987654220 1111 1234
Q ss_pred cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 125 ~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.|...+.+.+--...++++++++...+++|+. ..||+.|++..|-
T Consensus 503 ~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIeV~~~~ 547 (597)
T PRK08273 503 VPYARFAELLGLKGIRVDDPEQLGAAWDEALA-----ADRPVVLEVKTDP 547 (597)
T ss_pred CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 67788888888888999998888888877764 2489999998764
No 240
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=87.91 E-value=1.5 Score=46.46 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=70.4
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC----------CC--C-CC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------GR--G-DF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----------~~--~-~~-q~~d~ 127 (437)
+.-+|.|.+.+. +|+.+|++-=| ++.-....|..|...++|+++|.-+...... +. . .+ ...|.
T Consensus 417 ~l~aaiGa~la~~~~~vv~~~GDG-~f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~ 495 (558)
T TIGR00118 417 GLPAAIGAKVAKPESTVICITGDG-SFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDF 495 (558)
T ss_pred hhhHHHhhhhhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCH
Confidence 445677877766 56655554333 2333456899999999999999876543210 00 0 11 23677
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+.-+..++++++++.+.+++|++ . .||+.|++..|-
T Consensus 496 ~~~a~a~G~~~~~v~~~~~l~~al~~a~~----~-~~p~liev~~~~ 537 (558)
T TIGR00118 496 VKLAEAYGIKGIRIEKPEELDEKLKEALS----S-NEPVLLDVVVDK 537 (558)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 78888887778889988777666666653 2 489999998873
No 241
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=87.76 E-value=0.71 Score=50.84 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCCCcchHHHHHHHhHhCC-----------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 386 WGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p-----------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
.++||.|++.|++.++.+. +++|+|++|||-++=... .+..|.+++|.
T Consensus 194 tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~Ld 254 (891)
T PRK09405 194 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLD 254 (891)
T ss_pred ccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence 4899999999999988865 689999999999876543 57777888874
No 242
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=87.71 E-value=1.7 Score=45.52 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=36.4
Q ss_pred CCCCCcchHHHHHHHhHhC---------C-----CCcEEEEEcCccccCCHH-H-HHHHHHcCc
Q 013746 385 TWGTMGVGLGYCIAAAIAC---------P-----ERLVVAVEGDSGFGFSAV-E-VEVWLSCII 432 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~---------p-----~~~vv~i~GDG~f~~~~~-e-L~Ta~r~~l 432 (437)
..|.+|-|++.|+|.++|. | |..+.|++|||++|-... | .+-|-.++|
T Consensus 114 TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L 177 (663)
T COG0021 114 TTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKL 177 (663)
T ss_pred ccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCC
Confidence 3589999999999999884 2 468999999999988765 4 333334554
No 243
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.71 E-value=1.4 Score=46.88 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=70.3
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC----CCCCCcchh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQELDQV 128 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~----~~~q~~d~~ 128 (437)
+.-+|.|.+.+. +|+.+|++-=|.-. =...-|.+|...++|++++.-+...... +. ..+...|..
T Consensus 427 ~lp~aiGa~lA~p~~~vv~i~GDG~f~-~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~ 505 (570)
T PRK06725 427 GFPAAIGAQLAKEEELVICIAGDASFQ-MNIQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFV 505 (570)
T ss_pred hhhHHHhhHhhcCCCeEEEEEecchhh-ccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHH
Confidence 334456665554 56766665433322 2346799999999999999866542210 00 112346778
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+.+-....++++++++...+++|+. .+||+.|+++.|-
T Consensus 506 ~~a~a~G~~~~~v~~~~~l~~al~~a~~-----~~~p~liev~id~ 546 (570)
T PRK06725 506 KVAEAYGVKGLRATNSTEAKQVMLEAFA-----HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 8889888888999988887777766653 2589999999873
No 244
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.70 E-value=3.2 Score=43.93 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=78.7
Q ss_pred CCcEeeccc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------
Q 013746 51 GVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------- 117 (437)
Q Consensus 51 ~i~~i~~~~---E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------- 117 (437)
.-+++.... =..+.-+|.|.+.+. +|+.+|++-=| |+.=.+..|..|...++|+++|.-+......
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~ 482 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDG-SFQMNSQELATAVQNDIPVIVAILNNGYLGMVRQWQELFY 482 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCc-hhhccHHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHc
Confidence 345665432 123555677777765 57777776444 4444457899999999999999876543210
Q ss_pred CCC----CC-CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 118 GRG----DF-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 118 ~~~----~~-q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+.. .+ ...|...+.+.+--+..++++++++.+.+++|+. ..||+.|++..|-
T Consensus 483 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~-----~~~p~liev~~~~ 539 (561)
T PRK06048 483 DKRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVA-----SDRPVVIDFIVEC 539 (561)
T ss_pred CCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence 000 11 2357778888887788999998888877777763 2489999998763
No 245
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=87.66 E-value=7.8 Score=41.21 Aligned_cols=107 Identities=7% Similarity=0.051 Sum_probs=72.9
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC----CCCCC-cchh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQE-LDQV 128 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~----~~~q~-~d~~ 128 (437)
.-+|.|.+.+. +++.+|++-=| |+.=....|..|.+.++|+++|.-+...... +. ..++. .|..
T Consensus 436 lpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~ 514 (579)
T TIGR03457 436 FPTIIGAKIAAPDRPVVAYAGDG-AWGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFA 514 (579)
T ss_pred HHHHHhhhhhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHH
Confidence 33566666665 56666665333 3333358899999999999999865543210 00 01233 4788
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+.+.+-.+..++++++++...+++|++... ..+|+.|++..|
T Consensus 515 ~lA~a~G~~g~~v~~~~el~~al~~a~~~~~--~~~p~lieV~v~ 557 (579)
T TIGR03457 515 GIADAMGAKGVVVDKPEDVGPALKKAIAAQA--EGKTTVIEIVCT 557 (579)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHHhhCC--CCCcEEEEEEeC
Confidence 8888888888999999999888888876432 247999999886
No 246
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=87.66 E-value=2.7 Score=44.47 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC----------CC---CCCCCcchhhhc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------GR---GDFQELDQVEAV 131 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----------~~---~~~q~~d~~~~~ 131 (437)
+|.|.+... +++.+|++-=| ++.-....|..|...++|+++|.-+...... +. ..+...|...+.
T Consensus 423 aaiGa~la~p~~~vv~i~GDG-sf~~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a 501 (557)
T PRK08199 423 AAIAAKLLFPERTVVAFAGDG-CFLMNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALA 501 (557)
T ss_pred HHHHHHHhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHH
Confidence 455655554 56666665333 2333557888899999999999876553210 00 112335777888
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+--...++++++++.+.+++|+. .+||+.|++..|
T Consensus 502 ~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~li~v~~~ 538 (557)
T PRK08199 502 RAYGGHGETVERTEDFAPAFERALA-----SGKPALIEIRID 538 (557)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 8887788899998877777766653 358999999876
No 247
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.63 E-value=1.1 Score=47.44 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=73.7
Q ss_pred CcEeeccchH---HHHHHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCCCcEEEEecCCCccC----C--CC--
Q 013746 52 VRFIAFHNEQ---SAGYAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINTWPIVMISGSCDQKD----F--GR-- 119 (437)
Q Consensus 52 i~~i~~~~E~---~A~~~A~gyar~tg~~~v~~~t~GpG~~n-~~~gi~~A~~~~~Pvl~I~g~~~~~~----~--~~-- 119 (437)
.+++..+.-. .+.-+|.|.+.+.+|+.+|++ |=|... .++.+..|.+.++|+++|.-+..... . ++
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 5565544322 244567788777677776665 444333 35788999999999999986554311 0 00
Q ss_pred -------CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 120 -------GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 120 -------~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.....|...+.+.+-...+++.+++++...+++|+ . ++||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~-~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----P-TPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----c-CCCCEEEEEeCC
Confidence 011235666677777666788888887766666664 3 358999999876
No 248
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=87.60 E-value=13 Score=36.90 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=84.2
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEecCCCC-----hHHHHHHH-HhC-CCcEe-eccchHHHHHHHHHHHhHhCCcEEEEE
Q 013746 13 QIDGNTLAAKSLSLFGA--THMFGVVGIP-----VTSLANRA-VQL-GVRFI-AFHNEQSAGYAASAYGYLTGKPGILLT 82 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv--~~vFg~pG~~-----~~~l~~al-~~~-~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~ 82 (437)
+++..+++.+.|.+..- +.++.+..+- .+...+.+ ++. .-|++ ....|++++.+|.|.|....||-+.+.
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 35666777777766642 3566654431 12222222 233 46777 567899999999999998777765543
Q ss_pred cC---ChhhHhhHHHHHHhh-----hCCCcEEEEecCCCccCCCCC-CCCCcchhhhccCccceeeec-CCcCchHHHHH
Q 013746 83 VS---GPGCVHGLAGLSNGM-----INTWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKA-KDITEVPKCVA 152 (437)
Q Consensus 83 t~---GpG~~n~~~gi~~A~-----~~~~Pvl~I~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~ 152 (437)
.+ ..+.-....-++.-. .-+.||+++... .. ..|.| .+|..+ .++++.+....... .++.++..+++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~-~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GA-AAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CC-CCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 21 122222223322111 113899988644 22 12233 344555 68999887554443 34455555554
Q ss_pred HHHHHhhcCCCceeEEEcC
Q 013746 153 QVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 153 ~A~~~a~~~~~GPv~l~iP 171 (437)
.|... +||+||-.+
T Consensus 183 ----~a~~~-~gPv~ir~~ 196 (356)
T PLN02683 183 ----AAIRD-PDPVVFLEN 196 (356)
T ss_pred ----HHHhC-CCcEEEEEe
Confidence 44443 489999753
No 249
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=87.52 E-value=2.8 Score=44.55 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=71.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCC---C-CC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---G-DF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~---~-~~-q~~d~ 127 (437)
+.-+|.|.+.++ +|+.++++-=| |+.-....|..|...++|+++|.-+..... .+. . .+ ...|.
T Consensus 429 glpaAiGaala~p~~~vv~i~GDG-sf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 507 (571)
T PRK07710 429 GLPAAIGAQLAKPDETVVAIVGDG-GFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDF 507 (571)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcch-HHhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCH
Confidence 455677777765 57776665433 333345679999999999999987654311 010 0 11 23577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+--...++++++++...+++|+. ..||+.|++..|-
T Consensus 508 ~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lieV~vd~ 549 (571)
T PRK07710 508 VKLAEAYGIKGVRIDDELEAKEQLQHAIE-----LQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence 78888888888999998777666666653 2489999999873
No 250
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.47 E-value=2.5 Score=44.86 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=70.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC----------CCC--C-CCC-Ccch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DFQ-ELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~--~-~~q-~~d~ 127 (437)
+.-+|.|.+.+. +|+.+|++-=| |+.=...-|..|.+.++|++++.-+..... .++ + .+. ..|.
T Consensus 426 glpaaiGa~la~p~~~vv~i~GDG-~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (572)
T PRK08979 426 GLPAAMGVKFAMPDETVVCVTGDG-SIQMNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDF 504 (572)
T ss_pred hhhHHHhhhhhCCCCeEEEEEcch-HhhccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCH
Confidence 334555665554 45666555333 333335789999999999999987655211 010 1 111 2577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+-.+..++++++++...+++|+. .+.||+.|++..|-
T Consensus 505 ~~~A~a~G~~~~~v~~~~eL~~al~~a~~----~~~~p~lIev~i~~ 547 (572)
T PRK08979 505 AKIAEAYGHVGIRISDPDELESGLEKALA----MKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----cCCCcEEEEEEeCC
Confidence 78888888889999998888777777764 23589999998773
No 251
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.40 E-value=2.4 Score=45.32 Aligned_cols=105 Identities=9% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCC---CC-CC-Ccchh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---GD-FQ-ELDQV 128 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~---~~-~q-~~d~~ 128 (437)
.-+|.|.+.+. .|+.++++-=| |+.=.+.-|..|.+.++|++++.-+..... .+. .. ++ ..|..
T Consensus 436 lpaaiGa~lA~p~r~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~ 514 (595)
T PRK09107 436 LPAALGVQIAHPDALVIDIAGDA-SIQMCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFV 514 (595)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHH
Confidence 34556666655 35656554322 333334679999999999999987655321 011 11 11 25777
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+.+-.+.+++++++++.+.+++|+. ..||+.|+++.|-
T Consensus 515 ~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~~ 555 (595)
T PRK09107 515 KLAEAYGAVGIRCEKPGDLDDAIQEMID-----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence 8889998889999998888777777664 2489999999874
No 252
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=87.33 E-value=16 Score=39.56 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEecCCC-ChHHHHHHHHh-CCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 13 QIDGNTLAAKSLSLFG--ATHMFGVVGI-PVTSLANRAVQ-LGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~G--v~~vFg~pG~-~~~~l~~al~~-~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
.++-.+++.+.|.+.. =+.|+++-.+ .....++.+.+ -.=|++ ...-|++++.+|.|.|...-||-|++- .+=
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy--stF 457 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP--SAF 457 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEee--hhH
Confidence 4567777777776653 2455555221 11111233322 234455 567899999999999986666655432 232
Q ss_pred hHhhHHHH-HHhhhCCCcEEEEecCCCccCCC-CC-CCCCcchhhhccCccceeeecC-CcCchHHHHHHHHHHhhcCCC
Q 013746 88 CVHGLAGL-SNGMINTWPIVMISGSCDQKDFG-RG-DFQELDQVEAVKPFSKFAVKAK-DITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 88 ~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~-~~-~~q~~d~~~~~~~~~k~~~~v~-~~~~~~~~l~~A~~~a~~~~~ 163 (437)
+.-+.--| .++...+.||.++.-... ..+ .| .+|.+...++++.+.......+ +++++..+++.| ....+
T Consensus 458 lqRAyDQI~~Dval~~lpV~~vid~aG--lvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A----~~~~~ 531 (701)
T PLN02225 458 LQRAYDQVVHDVDRQRKAVRFVITSAG--LVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA----AYVTD 531 (701)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEECCc--cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH----HhcCC
Confidence 33333332 224556678877653322 222 23 4666666799999986665543 444555555444 32335
Q ss_pred ceeEEEcCcch
Q 013746 164 GGCYLDLPTDV 174 (437)
Q Consensus 164 GPv~l~iP~dv 174 (437)
|||||-+|...
T Consensus 532 gPv~IR~pRg~ 542 (701)
T PLN02225 532 RPVCFRFPRGS 542 (701)
T ss_pred CCEEEEecccc
Confidence 99999999863
No 253
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=87.24 E-value=0.76 Score=50.77 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=39.4
Q ss_pred CCCCCcchHHHHHHHhHhCC-----------CCcEEEEEcCccccCCHH--HHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p-----------~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~ 433 (437)
..|+||-|++.||+.++.+. +++|+||+|||-++=... .+..|.+++|.
T Consensus 201 ~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~Ld 262 (896)
T PRK13012 201 PTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLD 262 (896)
T ss_pred CCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCC
Confidence 45899999999999988753 378999999999876543 47777888874
No 254
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.02 E-value=1.2 Score=47.70 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CCC----CC--CCcchhh
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF--QELDQVE 129 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~~----~~--q~~d~~~ 129 (437)
+|.|.+.+. +|+.++++-=| |+.=...-|..|.+.++|+++|.-+...... +.. .+ ...|...
T Consensus 442 aAiGA~lA~p~r~Vv~i~GDG-~f~m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~ 520 (616)
T PRK07418 442 AAMGVKVALPDEEVICIAGDA-SFLMNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVK 520 (616)
T ss_pred HHHHHHHhCCCCcEEEEEcch-HhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHH
Confidence 456666554 56766665333 2333346788999999999999866543210 000 11 2357778
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+.+--+.+++++++++.+.+++|++ . .||+.|++..|
T Consensus 521 ~A~a~G~~g~~V~~~~el~~al~~a~~----~-~~p~lIeV~i~ 559 (616)
T PRK07418 521 LAEAFGVKGMVISERDQLKDAIAEALA----H-DGPVLIDVHVR 559 (616)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEec
Confidence 888888888999998888777777764 2 47999999886
No 255
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=87.01 E-value=3.2 Score=43.79 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=73.4
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------C-C--C-CC-CCcchh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-R--G-DF-QELDQV 128 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~-~--~-~~-q~~d~~ 128 (437)
.-+|.|.+.+. +|+.+|++-= -|+.-.+..|..|...++|+++|.-+...... + + + .+ ...|..
T Consensus 407 lpaAiGa~la~p~~~vv~i~GD-G~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 485 (548)
T PRK08978 407 LPAAIGAQVARPDDTVICVSGD-GSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFV 485 (548)
T ss_pred HHHHHHHHHhCCCCcEEEEEcc-chhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHH
Confidence 45667777665 5676666533 34555568899999999999999866543210 0 0 0 11 236778
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+.+--+.+++++++++.+.+++|+. ..||..|++..|-
T Consensus 486 ~la~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~id~ 526 (548)
T PRK08978 486 MLASAFGIPGQTITRKDQVEAALDTLLN-----SEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence 8888888889999999888888877764 2489999999874
No 256
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=86.94 E-value=2.1 Score=45.21 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=68.9
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-------CCC----CC-CCcchhhhc
Q 013746 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-------GRG----DF-QELDQVEAV 131 (437)
Q Consensus 64 ~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-------~~~----~~-q~~d~~~~~ 131 (437)
.-+|.|.+.+.+|+.++++-=| |+.=...-|..|.+.++|+++|.-+...... +.. .+ ...|...+.
T Consensus 423 lpaaiGaala~~~~vv~i~GDG-sf~m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la 501 (554)
T TIGR03254 423 MGYAIAAAVETGKPVVALEGDS-AFGFSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMM 501 (554)
T ss_pred HHHHHHHHhcCCCcEEEEEcCc-hhcccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHH
Confidence 3455666666677766665333 2332346788899999999999866543111 100 11 234677788
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+....+++++++++...+++|+. ..||+.|++..|
T Consensus 502 ~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~id 538 (554)
T TIGR03254 502 KAFGGVGYNVTTPDELKAALNEALA-----SGKPTLINAVID 538 (554)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEEC
Confidence 8888788999998888777777653 248999999876
No 257
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=86.87 E-value=4 Score=43.58 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=67.0
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHh-hHHHHHHhhhCCCcEEEEecCCCccC-CCC------C------CCCCcchhhh
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVH-GLAGLSNGMINTWPIVMISGSCDQKD-FGR------G------DFQELDQVEA 130 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n-~~~gi~~A~~~~~Pvl~I~g~~~~~~-~~~------~------~~q~~d~~~~ 130 (437)
+|.|.+.+. .++.++++- --++.. .+..|.+|...++|+++|.-+..... .+. + .++.+|...+
T Consensus 411 ~AiGa~~a~p~~~Vv~i~G-DG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~i 489 (595)
T TIGR03336 411 VASGLSKAGEKQRIVAFIG-DSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEEL 489 (595)
T ss_pred HHhhhhhcCCCCCEEEEec-cchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHH
Confidence 455555543 455555542 223433 48999999999999999975543221 110 0 1234678888
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+.+--...++.+++++.+ +..|++.+... +||..|++..+-
T Consensus 490 a~a~G~~~~~v~~~~~l~~-l~~al~~a~~~-~gp~li~v~~~C 531 (595)
T TIGR03336 490 CRASGVEFVEVVDPLNVKE-TIEVFKAALAA-EGVSVIIAKQPC 531 (595)
T ss_pred HHHcCCCEEEEeCcCCHHH-HHHHHHHHHhc-CCCEEEEEcccC
Confidence 8888777888888877542 34555555543 589999988764
No 258
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=86.80 E-value=6.5 Score=35.51 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHH------hCCCcEeeccchHHHHHHHH--------HHHh---Hh
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAV------QLGVRFIAFHNEQSAGYAAS--------AYGY---LT 74 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~------~~~i~~i~~~~E~~A~~~A~--------gyar---~t 74 (437)
...++.+++.|++.+-=++||+-|+... ++...+. +.+++.+....+..- ..|. =|+| ..
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~-~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVV-LTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHH-HHHHhccccHHHHHHHHHHHc
Confidence 3567888888888888899999887543 3333332 356777754333321 1121 1222 23
Q ss_pred CCcE-EEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCcc
Q 013746 75 GKPG-ILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQK 115 (437)
Q Consensus 75 g~~~-v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~~ 115 (437)
.+++ ++++-|+.| .-|.+.++..|+..+.|+|.||+.....
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 3333 444444444 6778899999999999999999976543
No 259
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=86.68 E-value=2.7 Score=44.62 Aligned_cols=106 Identities=10% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC-------CC--C---CCC-CCcchhh
Q 013746 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-------FG--R---GDF-QELDQVE 129 (437)
Q Consensus 63 A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~-------~~--~---~~~-q~~d~~~ 129 (437)
+.-+|.|.+.+.+++.+|++-=| |+.=.+.-|..|.+.++|+++|.-+..... .+ . ..+ ...|...
T Consensus 429 glpaaiGa~la~~~~vv~i~GDG-~f~m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 507 (569)
T PRK09259 429 GMGYAIAAAVETGKPVVAIEGDS-AFGFSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDK 507 (569)
T ss_pred cHHHHHHHHhcCCCcEEEEecCc-cccccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHH
Confidence 44566777777778766665333 233334678889999999999986654210 01 0 011 2356777
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+.+.+--...++++++++...+++|+. ..||+.|++..|-
T Consensus 508 lA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~id~ 547 (569)
T PRK09259 508 MMEAFGGVGYNVTTPDELRHALTEAIA-----SGKPTLINVVIDP 547 (569)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEECC
Confidence 888887778999998888777777753 2489999999873
No 260
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=86.66 E-value=0.94 Score=44.07 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhC
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g 246 (437)
..|+++.+|+.|+..+|+-|.|..-+++.-.++|++|++.
T Consensus 297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~ 336 (463)
T COG1282 297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLR 336 (463)
T ss_pred CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHH
Confidence 3578899999999999999999877777666777666664
No 261
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.56 E-value=2.5 Score=44.43 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=68.0
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC--------CCCC-----CCCCcchhh
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRG-----DFQELDQVE 129 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~--------~~~~-----~~q~~d~~~ 129 (437)
.-+|.|.+.+. +++.+|++-=| ++.-.+..|..|...++|++++.-+..... .+.+ .+...|...
T Consensus 413 lp~aiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 491 (530)
T PRK07092 413 LPAAVGVALAQPGRRVIGLIGDG-SAMYSIQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVA 491 (530)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCc-hHhhhHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHH
Confidence 34567776654 56666665433 333346889999999999999986554221 0111 123467778
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+.+-....++++++++.+.+++|+ .. .||+.|++..|
T Consensus 492 ~a~~~G~~~~~v~~~~~l~~al~~a~----~~-~~p~liev~~d 530 (530)
T PRK07092 492 LARGYGCEAVRVSDAAELADALARAL----AA-DGPVLVEVEVA 530 (530)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEcC
Confidence 88888777888888777666665554 33 48999998765
No 262
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.52 E-value=1.4 Score=46.70 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC---C-CCC-Ccch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---G-DFQ-ELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~---~-~~q-~~d~ 127 (437)
+.-+|.|.+.+. .|+.+|++-=| |+.=.+..|..|...++|++++.-+...... +. . .++ ..|.
T Consensus 419 ~l~~aiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 497 (563)
T PRK08527 419 GLPAALGAKLAVPDKVVINFTGDG-SILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDF 497 (563)
T ss_pred hHHHHHHHHHhCCCCcEEEEecCc-hhcccHHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCH
Confidence 444677777776 46666665333 2333346788899999999988866543210 00 0 121 3577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+--+.+++++++++.+.+++|+. ..||+.|++..|-
T Consensus 498 ~~~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lieV~v~~ 539 (563)
T PRK08527 498 VKLAESFGGIGFRVTTKEEFDKALKEALE-----SDKVALIDVKIDR 539 (563)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEECC
Confidence 78888888788999998888777777754 2489999999874
No 263
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=86.38 E-value=1.6 Score=46.09 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------CCC--CCCCcc---hhhhc
Q 013746 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GRG--DFQELD---QVEAV 131 (437)
Q Consensus 66 ~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~~~--~~q~~d---~~~~~ 131 (437)
+|.|...+. +|..+|++-=|.-..| ..-|..|.+.++|+++|.-+...... ..+ ...++. ...+.
T Consensus 416 aAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klA 494 (550)
T COG0028 416 AAIGAKLAAPDRKVVAIAGDGGFMMN-GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLA 494 (550)
T ss_pred HHHHHHhhCCCCcEEEEEcccHHhcc-HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHH
Confidence 445555554 4677777655544444 78899999999999999865543211 011 111111 34566
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
+.+--..+++++++++.+.+++|+. . +||+.|+++.|-.
T Consensus 495 ea~G~~g~~v~~~~el~~al~~al~----~-~~p~lidv~id~~ 533 (550)
T COG0028 495 EAYGAKGIRVETPEELEEALEEALA----S-DGPVLIDVVVDPE 533 (550)
T ss_pred HHcCCeeEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEecCc
Confidence 6666677888888887777766655 2 4899999998854
No 264
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.23 E-value=4.1 Score=43.42 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=71.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC----------CCC--C-CCC-Ccch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DFQ-ELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~--~-~~q-~~d~ 127 (437)
+.-+|.|.+.+. +|+.+|++-=| ++.=...-|..|.+.++|+++|.-+..... .++ + .++ ..|.
T Consensus 442 glpaaiGa~lA~p~r~Vv~i~GDG-sf~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~ 520 (587)
T PRK06965 442 GLPYAMGIKMAHPDDDVVCITGEG-SIQMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDF 520 (587)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcch-hhhcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCH
Confidence 344567777664 56666665333 334345789999999999999987655321 001 1 111 2477
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+.+.+-.+.+++++++++.+.+++|+.. +.+|+.|++..|
T Consensus 521 ~~iA~a~G~~~~~v~~~~eL~~al~~a~~~----~~~p~lieV~i~ 562 (587)
T PRK06965 521 VKLAEAYGHVGMRIEKTSDVEPALREALRL----KDRTVFLDFQTD 562 (587)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEec
Confidence 788888888899999988887777776652 348999999887
No 265
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=86.11 E-value=3.6 Score=43.48 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=70.2
Q ss_pred HHHHHHhHh--CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------CCCC----CCCcchhhhc
Q 013746 66 AASAYGYLT--GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GRGD----FQELDQVEAV 131 (437)
Q Consensus 66 ~A~gyar~t--g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~~~~----~q~~d~~~~~ 131 (437)
+|.|.+.+. +|+.+|++-=| ++.-.+..|..|...++|+++|.-+...... +... +...|...+.
T Consensus 404 aaiGa~la~p~~~~Vv~i~GDG-sf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA 482 (549)
T PRK06457 404 GSVGASFAVENKRQVISFVGDG-GFTMTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIA 482 (549)
T ss_pred HHHHHHhcCCCCCeEEEEEccc-HHhhhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHH
Confidence 566666654 47776665433 4444567899999999999999865543210 1111 1235777788
Q ss_pred cCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 132 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+.+--...++++++++...+++|+. ..||..|++-.|-
T Consensus 483 ~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~~ 520 (549)
T PRK06457 483 ESIGFKGFRLEEPKEAEEIIEEFLN-----TKGPAVLDAIVDP 520 (549)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCc
Confidence 8887778899998888887777763 2489999988773
No 266
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=85.99 E-value=3.1 Score=44.59 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=73.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CCC----CC-----C
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF-----Q 123 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~~----~~-----q 123 (437)
+.-+|.|.+.+. +|+.+|++-=| |+.=....|..|.+.++|+++|.-+...... +.. .+ .
T Consensus 452 glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~ 530 (612)
T PRK07789 452 AVPAAMGAKVGRPDKEVWAIDGDG-CFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHR 530 (612)
T ss_pred hhhhHHhhhccCCCCcEEEEEcch-hhhccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCC
Confidence 444566666664 57766664333 4444457899999999999999865543210 000 11 1
Q ss_pred CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 124 ~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..|...+.+.+-.+.+++++++++...+++|+.. ..||+.|++..|-
T Consensus 531 ~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~----~~~p~lIev~i~~ 577 (612)
T PRK07789 531 IPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAI----NDRPVVIDFVVGK 577 (612)
T ss_pred CCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEECC
Confidence 2577888899988899999988888888777653 1489999999874
No 267
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=85.87 E-value=2.5 Score=44.92 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CCC----CC-CCcchhh
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF-QELDQVE 129 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~~----~~-q~~d~~~ 129 (437)
-+|.|.+.+. +++.++++-=| ++.=....|..|.+.++|+++|.-+...... +.. .+ ...|...
T Consensus 428 paAiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~ 506 (572)
T PRK06456 428 PAAMGAKLARPDKVVVDLDGDG-SFLMTGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVK 506 (572)
T ss_pred HHHHHHHHhCCCCeEEEEEccc-hHhcchHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHH
Confidence 4567777765 46666665433 3444457899999999999999876543210 110 12 2368888
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+.+.+..+..++++++++.+.+++|+. ..||..|++..|-
T Consensus 507 ~A~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIev~v~~ 546 (572)
T PRK06456 507 LAEAFGALGFNVTTYEDIEKSLKSAIK-----EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHCCCeeEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCc
Confidence 889988888999998888777776653 2489999999874
No 268
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=85.69 E-value=4.5 Score=43.10 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=69.3
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CCC----CC--CCcchh
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF--QELDQV 128 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~~----~~--q~~d~~ 128 (437)
-+|.|.+.+. +|+.+|++-=| |+.=.+..|..|...++|++++.-+...... +.. .+ ...|..
T Consensus 437 paaiGaala~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~ 515 (585)
T CHL00099 437 PAAIGAQIAHPNELVICISGDA-SFQMNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFV 515 (585)
T ss_pred HHHHHHHHhCCCCeEEEEEcch-hhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHH
Confidence 3566666664 56666655333 3333356899999999999999876542110 000 01 235777
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+.+.+--+.+++++++++.+.+++|+. . .||..|++..|
T Consensus 516 ~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~v~ 555 (585)
T CHL00099 516 KLAEAYGIKGLRIKSRKDLKSSLKEALD----Y-DGPVLIDCQVI 555 (585)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEEC
Confidence 8888888888999998888777777664 2 48999999987
No 269
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=84.85 E-value=0.58 Score=36.01 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=40.8
Q ss_pred CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC--CCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCC
Q 013746 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDTHPLAATAARSLAIGQCDVALVVGARLN 289 (437)
Q Consensus 220 rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~--gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~ 289 (437)
+.++-+|.|+...+..+.+++||+.+|+-|-+|.. -+|.+|.+ ..+|..+. .-..|+.|.+|.+=.
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~sG~--~v~P~lyia~GISGa 75 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQSGK--TVAPKLYIAFGISGA 75 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBSTTSB----T-SEEEEES----
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCCCCc--EEeeeeeEeecchhh
Confidence 45677788887777889999999999999888754 36777764 45665332 236899999997643
No 270
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=84.03 E-value=4 Score=43.51 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=69.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------CC----CCC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~----~~~-q~~d~ 127 (437)
+.-+|.|.+.+. +++.+|++-=| ++.-....|..|.+.++|+++|.-+...... +. ..+ ...|.
T Consensus 424 ~lpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ 502 (586)
T PRK06276 424 GFPAAIGAKVAKPDANVIAITGDG-GFLMNSQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDF 502 (586)
T ss_pred chhHHHhhhhhcCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 444667777665 45656555333 3444457899999999999999876543110 11 011 23577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+.+.+--+..++++++++...+++|+. ..||..|++..|
T Consensus 503 ~~la~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~ 543 (586)
T PRK06276 503 VKLAESYGVKADRVEKPDEIKEALKEAIK-----SGEPYLLDIIID 543 (586)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 77888887788899998887777766653 248999998765
No 271
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=84.02 E-value=5.8 Score=39.12 Aligned_cols=110 Identities=20% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhHhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCC----cchhhhccC
Q 013746 61 QSAGYAASAYGYLTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE----LDQVEAVKP 133 (437)
Q Consensus 61 ~~A~~~A~gyar~tg~~~v~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~----~d~~~~~~~ 133 (437)
.-|+.+|.+.-+...+..|+++..|=|++| ...++-=|-.-+.|+|++.=+..-...-....|. +.+....-.
T Consensus 143 ~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~ayg 222 (358)
T COG1071 143 PLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYG 222 (358)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccC
Confidence 334445544444443455888888988876 3456666777899999998543211111111122 122222222
Q ss_pred ccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 134 FSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 134 ~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
+.-..+.=.++-.+.+...+|...|+.+. ||+.|+.=
T Consensus 223 ipgv~VDG~D~~avy~~~~~A~e~AR~g~-GPtLIE~~ 259 (358)
T COG1071 223 IPGVRVDGNDVLAVYEAAKEAVERARAGE-GPTLIEAV 259 (358)
T ss_pred CCeEEECCcCHHHHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 33223333466678899999999999986 99999864
No 272
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=84.02 E-value=1.3 Score=46.03 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCCCCcchHHHHHHHhHhCC-----CCcEEEEEcCccccCCHH--HHHHHHHcCccc
Q 013746 383 AGTWGTMGVGLGYCIAAAIACP-----ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI 434 (437)
Q Consensus 383 ~~~~g~mG~~lpaAiGaala~p-----~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i 434 (437)
.-+.|.+|.|++.|+|.+++.. +-+|+|++|||..+-... ..+-|--|++.-
T Consensus 114 ~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldn 172 (632)
T KOG0523|consen 114 EVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDN 172 (632)
T ss_pred eeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCC
Confidence 3345889999999999887752 569999999999876543 344455555543
No 273
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=83.80 E-value=1.3 Score=42.90 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCHHH----HHHHHHcCcccccC
Q 013746 386 WGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVE----VEVWLSCIIMISSI 437 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~~e----L~Ta~r~~l~i~~i 437 (437)
.+.+|..+|.|.|.+++. .+.-++|++|||+. +-.+ |--|..+++|++.|
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~--~qG~~~EalN~A~~~~lPvifv 157 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGAT--SQGDFHEALNLAALWKLPVIFV 157 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGG--GSHHHHHHHHHHHHTTTSEEEE
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCccc--ccCccHHHHHHHhhccCCeEEE
Confidence 366788888888887774 45678999999993 3233 55556799998643
No 274
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=83.27 E-value=4 Score=34.45 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=54.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHHh----C--CCcEeeccc----------hHHHHHHHHHHHhHhC
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQ----L--GVRFIAFHN----------EQSAGYAASAYGYLTG 75 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~~----~--~i~~i~~~~----------E~~A~~~A~gyar~tg 75 (437)
...++.+++.+++-|.=++||.-|+... ++...+-. . .++.+...+ |...+|+..=......
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 3678999999999999999999666433 33333321 1 233443333 2222222111111224
Q ss_pred CcE-EEEEcCCh-hhHhhHHHHHHhhhCCCcEEEEec
Q 013746 76 KPG-ILLTVSGP-GCVHGLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 76 ~~~-v~~~t~Gp-G~~n~~~gi~~A~~~~~Pvl~I~g 110 (437)
+|+ ++++.|.. ...|.+-++..|+.-+.++|.|||
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 554 33333333 367888999999999999999986
No 275
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=82.45 E-value=6.2 Score=39.90 Aligned_cols=84 Identities=23% Similarity=0.166 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC-CCCCCCCC-cccH---HHHhchhcC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG-LLPDTHPL-AATA---ARSLAIGQC 278 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg-~~~~~hp~-~~G~---~~~~~l~~a 278 (437)
=+++++.+++.|++++++.++.+... .......+.+|++.+|..+-. .+.- ..+....+ ..|. ...+..+++
T Consensus 62 WdeAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~di~~~a 138 (421)
T TIGR03129 62 YEEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN--TASVCHGPSLLALQEVGWPSCTLGEVKNRA 138 (421)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc--cchhccccHHHHHHhcCCccccHHHHhhcC
Confidence 36788999999999999877655543 233445678999998874311 1100 00000000 0010 011222479
Q ss_pred CEEEEEcCcCCC
Q 013746 279 DVALVVGARLNW 290 (437)
Q Consensus 279 Dlvl~iG~~~~~ 290 (437)
|+||.+|+.+.+
T Consensus 139 d~il~~G~n~~~ 150 (421)
T TIGR03129 139 DVIIYWGTNPMH 150 (421)
T ss_pred CEEEEEccCccc
Confidence 999999998754
No 276
>PRK07586 hypothetical protein; Validated
Probab=82.04 E-value=3 Score=43.63 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=66.0
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC--------CCC---C-------CC--C
Q 013746 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGR---G-------DF--Q 123 (437)
Q Consensus 65 ~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~--------~~~---~-------~~--q 123 (437)
-+|.|.+.+. +|+.+|++-=| ++.=.+..|..|...++|+++|.-+..... .+. + .+ .
T Consensus 392 paaiGa~lA~p~r~Vv~i~GDG-sf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (514)
T PRK07586 392 PLATGAAVACPDRKVLALQGDG-SAMYTIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDP 470 (514)
T ss_pred HHHHHHHHhCCCCeEEEEEech-HHHhHHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCC
Confidence 3456666654 56666655322 333346789999999999988875543211 000 0 01 2
Q ss_pred CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 124 ~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
..|...+.+.+-...+++++++++.+.+++|++ . .||+.|++.
T Consensus 471 ~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~----~-~~p~liev~ 513 (514)
T PRK07586 471 DLDWVALAEGMGVPARRVTTAEEFADALAAALA----E-PGPHLIEAV 513 (514)
T ss_pred CCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHc----C-CCCEEEEEE
Confidence 357778888888888999998888777777653 2 489999875
No 277
>PRK12474 hypothetical protein; Provisional
Probab=81.98 E-value=3.1 Score=43.59 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=67.5
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC--------C---CC-------CCC-
Q 013746 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------G---RG-------DFQ- 123 (437)
Q Consensus 64 ~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~---~~-------~~q- 123 (437)
.-+|.|.+.+. +|+.+|++-=| ++.=.+.-|..|.+.++|+++|.-+...... + .+ .+.
T Consensus 395 lpaAiGa~lA~p~r~vv~i~GDG-~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
T PRK12474 395 LPLAAGAAVAAPDRKVVCPQGDG-GAAYTMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHN 473 (518)
T ss_pred HHHHHHHHHHCCCCcEEEEEcCc-hhcchHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCC
Confidence 34566766665 56666665333 3333357899999999999999865542210 0 00 011
Q ss_pred -CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 124 -ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 124 -~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
..|...+.+.+-....++++++++...+++|+. ..||+.|++.
T Consensus 474 ~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~-----~~~p~liev~ 517 (518)
T PRK12474 474 PELNWMKIAEGLGVEASRATTAEEFSAQYAAAMA-----QRGPRLIEAM 517 (518)
T ss_pred CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHc-----CCCCEEEEEE
Confidence 246777888887788999998888888877753 2489999874
No 278
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=81.93 E-value=0.9 Score=47.26 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCCcchHHHHHHHhHh----CCCCcEEEEEcCcccc--CCHHHHHHHH
Q 013746 387 GTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFG--FSAVEVEVWL 428 (437)
Q Consensus 387 g~mG~~lpaAiGaala----~p~~~vv~i~GDG~f~--~~~~eL~Ta~ 428 (437)
|.-+.++++|+|.+.| ..++.||+++|||++- |....|-.+-
T Consensus 115 GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag 162 (627)
T COG1154 115 GHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAG 162 (627)
T ss_pred CchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhh
Confidence 4445677777777766 4678999999999974 3333455553
No 279
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=81.17 E-value=6.6 Score=41.39 Aligned_cols=93 Identities=9% Similarity=0.083 Sum_probs=59.6
Q ss_pred CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC-----CC-CCC---CCCcchhhhccCccc----eeeec
Q 013746 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FG-RGD---FQELDQVEAVKPFSK----FAVKA 141 (437)
Q Consensus 75 g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~-----~~-~~~---~q~~d~~~~~~~~~k----~~~~v 141 (437)
+|+.+|++-=| |+.=.+.-|..|.+.++|+++|.-+..... .+ ... +...|...+.+.+-. +++++
T Consensus 422 ~~~vv~i~GDG-~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v 500 (539)
T TIGR03393 422 NRRVILLIGDG-SAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRV 500 (539)
T ss_pred CCCeEEEEcCc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEe
Confidence 46666655322 343445789999999999999986654321 01 011 122455566666644 37899
Q ss_pred CCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 142 ~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
++++++.+.+++|++ .+||+.|++..|
T Consensus 501 ~~~~el~~al~~a~~-----~~~p~liev~i~ 527 (539)
T TIGR03393 501 SEAEQLADVLEKVAA-----HERLSLIEVVLP 527 (539)
T ss_pred ccHHHHHHHHHHHhc-----cCCeEEEEEEcC
Confidence 988888777777653 358999999876
No 280
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=81.12 E-value=1.2 Score=47.11 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=28.3
Q ss_pred CCCcchHHHHHHHhHhCCCCcEEEEEcCc
Q 013746 387 GTMGVGLGYCIAAAIACPERLVVAVEGDS 415 (437)
Q Consensus 387 g~mG~~lpaAiGaala~p~~~vv~i~GDG 415 (437)
|-+||++.-|.||++-+|+..+.|++|||
T Consensus 153 GeLGy~l~ha~gAa~d~Pdli~~~vvGDG 181 (793)
T COG3957 153 GELGYALSHAYGAAFDNPDLIVACVVGDG 181 (793)
T ss_pred cchhHHHHHHHHhhcCCCCcEEEEEeccc
Confidence 78999999999999999999999999999
No 281
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=80.90 E-value=11 Score=33.87 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHH--HH------hCCCcEeeccchHHHH-----------HHHHHHHhHhC
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANR--AV------QLGVRFIAFHNEQSAG-----------YAASAYGYLTG 75 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~a--l~------~~~i~~i~~~~E~~A~-----------~~A~gyar~tg 75 (437)
..++.|.+.|++.|-=++||+-++......-+ +. +.|+..+.. .+.+.. .++. +.....
T Consensus 32 ~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~-~~~~~~ 109 (192)
T PRK00414 32 RAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSR-YVEAVG 109 (192)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHH-HHHHhC
Confidence 56788888888889999999977755432222 21 246665544 333211 1111 112222
Q ss_pred Cc-EEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 76 KP-GILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 76 ~~-~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
++ -++++.|..| ..+.+.++..|...++|+|.||+....
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 33 3555566666 567778899999999999999997543
No 282
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=79.86 E-value=10 Score=39.98 Aligned_cols=158 Identities=11% Similarity=-0.015 Sum_probs=98.6
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCC---CChHHHHHHHH----h-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEE
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAV----Q-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG---~~~~~l~~al~----~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~ 82 (437)
..+++.++-..+.|...--+.+=|... +....+-+... + .|=.+...-.|.+.+.++-|.+.-.|- -..-.
T Consensus 354 ~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~-~pygg 432 (663)
T COG0021 354 IATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGF-IPYGG 432 (663)
T ss_pred cchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCc-eeecc
Confidence 456677777778887764444444332 22222222111 1 122233455689888899999987771 12222
Q ss_pred cCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCC-CCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcC
Q 013746 83 VSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSG 161 (437)
Q Consensus 83 t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 161 (437)
|...=.--+-+++.-|-..++|++++-..-+...-..| .+|-++|++.+|.+.. ..+-+|.+..+. ..|++.|...
T Consensus 433 TFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN--~~V~RPaD~~Et-~~aw~~Al~~ 509 (663)
T COG0021 433 TFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPN--LSVIRPADANET-AAAWKYALER 509 (663)
T ss_pred eehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCC--ceeEecCChHHH-HHHHHHHHhc
Confidence 33333444557888999999999998754433222233 3788999999999864 344456665444 5789999887
Q ss_pred CCceeEEEcCc
Q 013746 162 RPGGCYLDLPT 172 (437)
Q Consensus 162 ~~GPv~l~iP~ 172 (437)
..||..|.+-+
T Consensus 510 ~~gPt~LiltR 520 (663)
T COG0021 510 KDGPTALILTR 520 (663)
T ss_pred CCCCeEEEEec
Confidence 77999997764
No 283
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.21 E-value=6.1 Score=39.81 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.....+.+..|++-.+=++++.....|..+.++|+.|+++.++||+...
T Consensus 114 TTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 114 TTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred HhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 4457788888988777777788889999999999999999999999763
No 284
>PRK13936 phosphoheptose isomerase; Provisional
Probab=78.74 E-value=14 Score=33.28 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHH--HHHHHH------hCCCcEeeccchHHH----------HHHHHHHHhHhCC
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAV------QLGVRFIAFHNEQSA----------GYAASAYGYLTGK 76 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~------~~~i~~i~~~~E~~A----------~~~A~gyar~tg~ 76 (437)
..++.+++.|.+.+.=++||+-++.... +...+. +.+++.+....+... ..+...+-....+
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 4578889999999999999997775432 333343 345666544222221 0011111112222
Q ss_pred cE-EEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCC
Q 013746 77 PG-ILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 77 ~~-v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
++ +++.-|..| .-+.+..+..|...++|+|.||+...
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 22 444444444 55577889999999999999998754
No 285
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.56 E-value=4 Score=43.92 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCC---------------Cc--EEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCC---CCC
Q 013746 205 NSDIDKAVSLLKEAK---------------KP--LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD---THP 264 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~---------------rP--vil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~---~hp 264 (437)
+++++.+++.|++.+ +| +.+.|.....-...-.+.+|++.+|.+.+... ++-.-.. ...
T Consensus 74 deAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l~ 152 (649)
T cd02752 74 DEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGLA 152 (649)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHHH
Confidence 456777777776543 34 44454443222334568899999998766432 2110000 000
Q ss_pred CcccHH----HHhchhcCCEEEEEcCcCCCccccC--CCC-CCCC-CceEEEhH
Q 013746 265 LAATAA----RSLAIGQCDVALVVGARLNWLLHFG--EPP-KWSK-DVKFVLVD 310 (437)
Q Consensus 265 ~~~G~~----~~~~l~~aDlvl~iG~~~~~~~~~~--~~~-~~~~-~~~~i~vd 310 (437)
..+|.. ...=+++||+||++|+...+..... +.. .... ++++|.||
T Consensus 153 ~~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVD 206 (649)
T cd02752 153 NTFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVD 206 (649)
T ss_pred hhcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEc
Confidence 011210 0122678999999998875432211 110 0112 67999999
No 286
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=78.12 E-value=2.9 Score=41.19 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCCCcchHHHHHHHhHhC-----CCCcEEEEEcCccccCCH-HH-HHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC-----PERLVVAVEGDSGFGFSA-VE-VEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~-----p~~~vv~i~GDG~f~~~~-~e-L~Ta~r~~l~i~~i 437 (437)
..+.+|..+|-|.|++++. .++-+++++|||+-.-.- .| |--|.=++||++.|
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ 193 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFV 193 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEE
Confidence 4578899999999998884 233789999999865431 12 33345688888753
No 287
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.77 E-value=3.4 Score=42.56 Aligned_cols=106 Identities=12% Similarity=-0.004 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHH----HHhc
Q 013746 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSLA 274 (437)
Q Consensus 205 ~~~~~~~~~~l~~------a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~----~~~~ 274 (437)
+++++.+++.|++ .+...++.|.+...........+|+..+|.+-+.....-+..+...+..+|.. ...-
T Consensus 88 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~d 167 (461)
T cd02750 88 DEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQTDVPESAD 167 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCCCCCCChhH
Confidence 4556666666653 22323333322221123345678999999876543322222222333334421 1233
Q ss_pred hhcCCEEEEEcCcCCCccccC--CCCCC-CCCceEEEhH
Q 013746 275 IGQCDVALVVGARLNWLLHFG--EPPKW-SKDVKFVLVD 310 (437)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~~--~~~~~-~~~~~~i~vd 310 (437)
+++||+||.+|+......... +.... ..++++|.||
T Consensus 168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~Gaklivid 206 (461)
T cd02750 168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVS 206 (461)
T ss_pred HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEc
Confidence 689999999999875432111 11001 2467999998
No 288
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=76.07 E-value=23 Score=31.86 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=46.1
Q ss_pred EEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeec-CCcCchHHHHHH
Q 013746 78 GILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQ 153 (437)
Q Consensus 78 ~v~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~ 153 (437)
..+++..|=|..+ ...++..|-....|+++|.=+......+. .. +....++.+ -|.... .+..+ .+.+.+
T Consensus 98 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~--~~--~~~~~~~a~-G~~~~~~vdG~d-~~~l~~ 171 (195)
T cd02007 98 RKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN--VG--TPGNLFEEL-GFRYIGPVDGHN-IEALIK 171 (195)
T ss_pred CeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC--CC--CHHHHHHhc-CCCccceECCCC-HHHHHH
Confidence 3444455666653 44677777777999999875443221111 11 344555543 222221 23333 334456
Q ss_pred HHHHhhcCCCceeEEEcC
Q 013746 154 VLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 154 A~~~a~~~~~GPv~l~iP 171 (437)
|++.|... +||+.|++-
T Consensus 172 a~~~a~~~-~~P~~I~~~ 188 (195)
T cd02007 172 VLKEVKDL-KGPVLLHVV 188 (195)
T ss_pred HHHHHHhC-CCCEEEEEE
Confidence 66666654 489998764
No 289
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=75.95 E-value=12 Score=37.35 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCC--CCCcccHHHHhchhcCCE
Q 013746 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT--HPLAATAARSLAIGQCDV 280 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~--hp~~~G~~~~~~l~~aDl 280 (437)
+++++.+++.|++.+ ...++.|.... .+....+.+|++.+|.+-+.+...-...+.. ..+..|... .-+++||+
T Consensus 71 deAl~~ia~~l~~~~~~si~~~~g~~~~-~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~-~di~~ad~ 148 (375)
T cd02773 71 EEALAAIAKALKGVKPDEIAAIAGDLAD-VESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTI-AGIEEADA 148 (375)
T ss_pred HHHHHHHHHHHhhcCcCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCH-HHHhhCCE
Confidence 567788888888764 56666554322 2344568899999998765443221111111 111122211 22588999
Q ss_pred EEEEcCcCCCccc-cC-CC-CCC-CCCceEEEhH
Q 013746 281 ALVVGARLNWLLH-FG-EP-PKW-SKDVKFVLVD 310 (437)
Q Consensus 281 vl~iG~~~~~~~~-~~-~~-~~~-~~~~~~i~vd 310 (437)
||++|+...+... .. .. ... ..++++|.||
T Consensus 149 il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~id 182 (375)
T cd02773 149 VLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIG 182 (375)
T ss_pred EEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEc
Confidence 9999998743221 11 00 111 2357899998
No 290
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=75.61 E-value=21 Score=30.61 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHH--HH------HhCCCcEeecc---chHHHH----HHHHHHHh---Hh-CCcE
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLAN--RA------VQLGVRFIAFH---NEQSAG----YAASAYGY---LT-GKPG 78 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~--al------~~~~i~~i~~~---~E~~A~----~~A~gyar---~t-g~~~ 78 (437)
+.+++.|.+.+.=++||+-++......- .+ .+.|+..+... |+..+. ...+-+.+ .. ++--
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 5688999999999999997765433222 11 12355544432 222111 01111222 11 3334
Q ss_pred EEEEcCChhh-HhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 79 ILLTVSGPGC-VHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 79 v~~~t~GpG~-~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
++++-|.+|- .+.+..+..|...++|++.||+....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 6666677774 45557788899999999999986543
No 291
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=74.98 E-value=9.3 Score=45.96 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=71.4
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhh--CCCcEEEEecCCCccCC-C---------C-------CCCCC
Q 013746 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMI--NTWPIVMISGSCDQKDF-G---------R-------GDFQE 124 (437)
Q Consensus 64 ~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~--~~~Pvl~I~g~~~~~~~-~---------~-------~~~q~ 124 (437)
.-+|.|.+...+++.+|+ +.--|+...+..|..|.. .+.|+++|.-+.....+ . + ...+.
T Consensus 767 lpaAIGaala~~r~Vv~i-~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~ 845 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCV-VGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHD 845 (1655)
T ss_pred HHHHHHHhhcCCCCEEEE-EehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCC
Confidence 335667666667776665 445567777889999877 48999888765543110 0 0 00123
Q ss_pred cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 125 ~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.|...+.+.+-....++.+++++...+++|+. .+||+.|++..|
T Consensus 846 ~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~-----~~~p~lIEV~t~ 889 (1655)
T PLN02980 846 ISIENLCLAHGVRHLHVGTKSELEDALFTSQV-----EQMDCVVEVESS 889 (1655)
T ss_pred CCHHHHHHHcCCceeecCCHHHHHHHHHHhhc-----cCCCEEEEEecC
Confidence 57777888888888999998888777766653 358999999987
No 292
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=74.56 E-value=1.1 Score=42.51 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH-H-HHHHHHhCCCcEee----------ccchHHHHHHHHHHHhHhCCcEEEEEc
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT-S-LANRAVQLGVRFIA----------FHNEQSAGYAASAYGYLTGKPGILLTV 83 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~-~-l~~al~~~~i~~i~----------~~~E~~A~~~A~gyar~tg~~~v~~~t 83 (437)
-..+.++.+.+.|.+.|.-.-+.... . +.+.|. +..++|. ..+|..-+.+=.||.-..|.+.-++.|
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~-~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~H 116 (270)
T cd08769 38 ELNAVLEELFESGFEEIVVADSHGRMDNIDYEELD-PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMDH 116 (270)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC-cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCcccc
Confidence 35677888999999999888653221 2 233332 3444443 223322222224555444542233344
Q ss_pred CChhh--H----------hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHH
Q 013746 84 SGPGC--V----------HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCV 151 (437)
Q Consensus 84 ~GpG~--~----------n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l 151 (437)
+--|. . -..-.-+-|-.-++||+++||+.......+..+-.+.....-+.+.+++....+|+.+.+.|
T Consensus 117 T~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I 196 (270)
T cd08769 117 TYSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEEL 196 (270)
T ss_pred ccccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHH
Confidence 42221 1 11122233445799999999986443322222223333344456677888888999999999
Q ss_pred HHHHHHhhc
Q 013746 152 AQVLERAVS 160 (437)
Q Consensus 152 ~~A~~~a~~ 160 (437)
+++.+.|..
T Consensus 197 ~~aa~~Al~ 205 (270)
T cd08769 197 REAVKEALE 205 (270)
T ss_pred HHHHHHHHH
Confidence 999988874
No 293
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=74.23 E-value=8.6 Score=34.67 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
..+.+.+..+...++-+-++-....|.++.++|+.+|+.+|+|++...
T Consensus 16 Tt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 16 TTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp HHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred hHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 345666666654455555555566778999999999999999998643
No 294
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=72.42 E-value=10 Score=37.83 Aligned_cols=105 Identities=20% Similarity=0.178 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCc-cc--HHHHhchhcCC
Q 013746 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-AT--AARSLAIGQCD 279 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~-~G--~~~~~~l~~aD 279 (437)
+++++.+++.|++.+ +..++.|.... -.....+.+|++.+|.+-+.....-.......... .+ .....=++++|
T Consensus 72 deAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad 150 (386)
T cd02768 72 EEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEAD 150 (386)
T ss_pred HHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCC
Confidence 567888888898776 66666665442 22335688999999987553321100000000000 00 01122357999
Q ss_pred EEEEEcCcCCCccccCC--C-CCCC-CCceEEEhH
Q 013746 280 VALVVGARLNWLLHFGE--P-PKWS-KDVKFVLVD 310 (437)
Q Consensus 280 lvl~iG~~~~~~~~~~~--~-~~~~-~~~~~i~vd 310 (437)
+||.+|+.+.+...... . .... .++++|.||
T Consensus 151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~id 185 (386)
T cd02768 151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIG 185 (386)
T ss_pred EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEEC
Confidence 99999998754221110 0 0112 267888888
No 295
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=72.02 E-value=1.4e+02 Score=33.56 Aligned_cols=120 Identities=16% Similarity=0.055 Sum_probs=68.0
Q ss_pred CcEe-eccchHHHHH--HHHHHHhH-hCCcEEEE-EcCCh-hhHhhHHHHH-HhhhCCCcEEEEecCCCccCCCCC-CCC
Q 013746 52 VRFI-AFHNEQSAGY--AASAYGYL-TGKPGILL-TVSGP-GCVHGLAGLS-NGMINTWPIVMISGSCDQKDFGRG-DFQ 123 (437)
Q Consensus 52 i~~i-~~~~E~~A~~--~A~gyar~-tg~~~v~~-~t~Gp-G~~n~~~gi~-~A~~~~~Pvl~I~g~~~~~~~~~~-~~q 123 (437)
=+++ ....|+++.. +|.|-++. .|++-+.+ .+..+ |+.-+.-=+- .+.+...++++.+.......-+.| .+|
T Consensus 565 gRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHq 644 (891)
T PRK09405 565 GQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHE 644 (891)
T ss_pred CcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCC
Confidence 3444 6788999887 88898886 35532322 23333 2222222122 233445666666544433333322 366
Q ss_pred CcchhhhccCccc-eeeecCCcCchHHHHHHHHHHhhcCCCc-eeEEEcC
Q 013746 124 ELDQVEAVKPFSK-FAVKAKDITEVPKCVAQVLERAVSGRPG-GCYLDLP 171 (437)
Q Consensus 124 ~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~~G-Pv~l~iP 171 (437)
+..-..+++.+.. -++...+..++...++.+++.+.....+ |+||.+.
T Consensus 645 dg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ 694 (891)
T PRK09405 645 DGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM 694 (891)
T ss_pred chhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC
Confidence 6655567777643 3555666777888888888866533212 7779885
No 296
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.38 E-value=8.8 Score=37.39 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
....+.+++.++.+..+-++++-+.-.|+++.++|..++|++|+||+...
T Consensus 152 KTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 152 KTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK 201 (340)
T ss_pred hHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC
Confidence 45568999999988877777777778889999999999999999999853
No 297
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=70.95 E-value=1.4 Score=41.61 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCCh--HHHHHHHHhCCCcEeeccc----------hHHHHHHHHHH-HhHhCCcEEEEE
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPV--TSLANRAVQLGVRFIAFHN----------EQSAGYAASAY-GYLTGKPGILLT 82 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~--~~l~~al~~~~i~~i~~~~----------E~~A~~~A~gy-ar~tg~~~v~~~ 82 (437)
-..+.++.+.+.|.+.|.-+-+... +=+.+.| .+..+.|.... |..-+.+=.|| +++..++++. .
T Consensus 38 evnAaiega~~aGa~eVvVnDsHg~~~Nll~e~L-~~~a~LI~G~prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL-~ 115 (265)
T cd00281 38 AVIAACEGSLAAGATQVLVKDSHDSGRNLIPERL-PEPVQLISGSGHPYCMVQGLDRSFDALLFIGYHARAGTAANVM-A 115 (265)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccccChhHC-CcCEEEEecCCCcchhhhccccCccEEEEEecCCcccCCCCcc-c
Confidence 3466778888999999998865322 1133333 24455563322 11111112342 2222213332 2
Q ss_pred cCChh-hHh----------hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHH
Q 013746 83 VSGPG-CVH----------GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCV 151 (437)
Q Consensus 83 t~GpG-~~n----------~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l 151 (437)
|+--| ..+ ..-.-+-|-.-++||+++||+.......+..+-.+.....-+.+..++....+|+.+.+.|
T Consensus 116 HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I 195 (265)
T cd00281 116 HSYTTEVSQIRINGQAIAEFHLNALTAGYYGVPVVMVAGDAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAI 195 (265)
T ss_pred cccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHH
Confidence 22111 111 1112223445799999999987554322222223333444456677888888999999999
Q ss_pred HHHHHHhh
Q 013746 152 AQVLERAV 159 (437)
Q Consensus 152 ~~A~~~a~ 159 (437)
+++.+.|.
T Consensus 196 ~~~a~~Al 203 (265)
T cd00281 196 REGTEGSL 203 (265)
T ss_pred HHHHHHHH
Confidence 99998775
No 298
>PRK13937 phosphoheptose isomerase; Provisional
Probab=70.51 E-value=28 Score=31.01 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHH--HHHHH------HhCCCcEeecc-chHHHHHHH---------HHHHhHh-C
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRA------VQLGVRFIAFH-NEQSAGYAA---------SAYGYLT-G 75 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al------~~~~i~~i~~~-~E~~A~~~A---------~gyar~t-g 75 (437)
..++.+++.|++.+-=++||+-++.... +...+ .+.|+..+... +.......+ ..+.... .
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 5688999999999999999996664432 21122 12456666532 221111000 0111111 2
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 76 ~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
+--++++-|..| ..+.+.++..|...++|++.||+....
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 223555555555 456677888899999999999986543
No 299
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.30 E-value=5 Score=31.60 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 218 a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
.+|.++++|.|...+-..+.+++++++.|+++-..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~ 37 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIA 37 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEE
Confidence 46889999999987777789999999999987443
No 300
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=68.92 E-value=7.4 Score=37.36 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 201 ~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+..++.++++++++|+++++.|++.|.|...+ .|||-+=+..
T Consensus 2 ~~~~~~~l~~l~~~i~~~~~ivvlTGAGiS~~------------SGIPdFR~~~ 43 (285)
T PRK05333 2 PDADPAALDALQDFVERHPRLFVLTGAGISTD------------SGIPDYRDRN 43 (285)
T ss_pred CcccHHHHHHHHHHHHhCCcEEEEeCCccccc------------cCCCcccCCC
Confidence 34578889999999999999999999998543 4677665443
No 301
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=68.74 E-value=5.5 Score=33.21 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+++...+..+.+-+.+-|.|++-.|. ...+.+.++|++.++|++.|..
T Consensus 66 ~~~~r~~~l~~l~~~~~P~iIvt~~~---~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 66 DEEERKERLEKLFSYNPPCIIVTRGL---EPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp -HHHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEcCC
Confidence 44555566777778899999998886 5678999999999999999876
No 302
>PRK13761 hypothetical protein; Provisional
Probab=68.28 E-value=10 Score=34.57 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
..+...++.+|.-|++|||=+-+... +-+.+++.+|++.+|+++=...+
T Consensus 54 ~~A~raAaA~LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLF 102 (248)
T PRK13761 54 LEAERAAAALLLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVNLF 102 (248)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEEec
Confidence 45677788889999999998866653 35679999999999999865443
No 303
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=67.75 E-value=7.5 Score=30.62 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=27.3
Q ss_pred CcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 220 rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
|.++++|.|...+-..+.++++++..|+|+-.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v 32 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEI 32 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEE
Confidence 46899999998887788999999999998643
No 304
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=67.03 E-value=2.1 Score=40.41 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH-H-HHHHHHhCCCcEeecc----------chHHHHHHHHHHHhHhCC-cEEEEE
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT-S-LANRAVQLGVRFIAFH----------NEQSAGYAASAYGYLTGK-PGILLT 82 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~-~-l~~al~~~~i~~i~~~----------~E~~A~~~A~gyar~tg~-~~v~~~ 82 (437)
=..+.++.+.+.|.+.|.-+-+...+ . +.+.| .+..++|... +|..-+.+=.||.-..|. .++ +.
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L-~~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gv-L~ 115 (266)
T cd08663 38 EVNAAIEGALEAGATEVLVNDSHGSMRNLLPEDL-DPRARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGV-LS 115 (266)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHC-CccEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCc-cc
Confidence 34567788889999999988653322 2 22333 2345555322 222222222453332333 333 33
Q ss_pred cCChhh--Hh----------hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHH
Q 013746 83 VSGPGC--VH----------GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKC 150 (437)
Q Consensus 83 t~GpG~--~n----------~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~ 150 (437)
|+--|. .+ ..-.-+-|-.-++||+++||+.......+.-+-++.....-+.+..++....+|+...+.
T Consensus 116 HT~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~ 195 (266)
T cd08663 116 HTYSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEAIGRFAARCLPPAEARAL 195 (266)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHH
Confidence 332221 11 111223345579999999998765432222222233334445667788888899999999
Q ss_pred HHHHHHHhh
Q 013746 151 VAQVLERAV 159 (437)
Q Consensus 151 l~~A~~~a~ 159 (437)
|+++.+.|.
T Consensus 196 I~~~a~~Al 204 (266)
T cd08663 196 IREAAAEAV 204 (266)
T ss_pred HHHHHHHHH
Confidence 999998885
No 305
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=66.56 E-value=2.3 Score=39.64 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCCCCCCcccHHHHhchhcCCEEEEEcCcCCC
Q 013746 259 LPDTHPLAATAARSLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 259 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~ 290 (437)
|-|.+|...-......+++||++|+||+++.-
T Consensus 157 FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V 188 (235)
T cd01408 157 FGESLPSRFFSHMEEDKEEADLLIVIGTSLKV 188 (235)
T ss_pred CCCCCCHHHHHHHHHHHhcCCEEEEECCCCee
Confidence 44444432222334567889999999999864
No 306
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=66.33 E-value=25 Score=35.07 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCC---cccHHHHhchhcCC
Q 013746 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL---AATAARSLAIGQCD 279 (437)
Q Consensus 205 ~~~~~~~~~~l~~a--~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~---~~G~~~~~~l~~aD 279 (437)
+++++.+++.|.+. ++-.+++|.... -+..-.+++|++.+|...+.+.......+-.+.. +.......-++++|
T Consensus 72 ~eAl~~ia~~l~~~~~~~i~~i~g~~~t-~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad 150 (366)
T cd02774 72 KTAFKFLNKFILLKKFSKLNFIIGSKID-LETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSD 150 (366)
T ss_pred HHHHHHHHHHHhhcCcccEEEEECCCCC-HHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCC
Confidence 45677777777654 345666666442 3455668899999998877643221110111111 11111223467999
Q ss_pred EEEEEcCcCCCcccc-CC-C-CCC-CCCceEEEhH
Q 013746 280 VALVVGARLNWLLHF-GE-P-PKW-SKDVKFVLVD 310 (437)
Q Consensus 280 lvl~iG~~~~~~~~~-~~-~-~~~-~~~~~~i~vd 310 (437)
+||++|+.+.+.... .. . ..+ ..+.+++.|+
T Consensus 151 ~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~ 185 (366)
T cd02774 151 LCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIG 185 (366)
T ss_pred EEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999987542211 10 0 011 2356788877
No 307
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=66.14 E-value=25 Score=35.12 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=48.6
Q ss_pred HHHHHHHHHHH--hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCccc---HHHHhch--hcC
Q 013746 206 SDIDKAVSLLK--EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT---AARSLAI--GQC 278 (437)
Q Consensus 206 ~~~~~~~~~l~--~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G---~~~~~~l--~~a 278 (437)
..++++.+.+. ..+|++|+.+.+....+..+.+.+..+..++.+.. |++--|.--- ..+.+.+ .++
T Consensus 15 g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~i-------f~~v~p~P~~~~v~~~~~~~~~~~~ 87 (377)
T COG1454 15 GSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEV-------FDEVEPEPTIETVEAGAEVAREFGP 87 (377)
T ss_pred ChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEE-------ecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 34566666666 46999999999987777888888888888866432 2222221111 1122233 479
Q ss_pred CEEEEEcCc
Q 013746 279 DVALVVGAR 287 (437)
Q Consensus 279 Dlvl~iG~~ 287 (437)
|+||.||.-
T Consensus 88 D~iIalGGG 96 (377)
T COG1454 88 DTIIALGGG 96 (377)
T ss_pred CEEEEeCCc
Confidence 999999954
No 308
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=65.98 E-value=26 Score=34.84 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhHhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEecCCCccCCCCC-CCCCcchhhhc-cCccc
Q 013746 62 SAGYAASAYGYLTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRG-DFQELDQVEAV-KPFSK 136 (437)
Q Consensus 62 ~A~~~A~gyar~tg~~~v~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q~~d~~~~~-~~~~k 136 (437)
-|+.+|.+.- ..|+..++++..|=|++| ..-++--|..-+.|+|+|+=+.... ++.. .-|.-. ..+. +...-
T Consensus 146 ~A~G~A~A~k-~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~~~~~~~~-~~~~~~~~~~ 222 (362)
T PLN02269 146 LGAGLAFAQK-YNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTAEWRAAKS-PAYYKRGDYV 222 (362)
T ss_pred HHHHHHHHHH-HhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCchhhhccc-hHHHHhhcCC
Confidence 3444444432 335566777777766554 4456666777899999998653211 1110 001100 0010 00000
Q ss_pred eeeec--CCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 137 FAVKA--KDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 137 ~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
-..+| +++..+.+.+.+|++.+.. + ||+.|++-
T Consensus 223 p~~~VDG~D~~av~~a~~~A~~~aR~-~-gP~lIe~~ 257 (362)
T PLN02269 223 PGLKVDGMDVLAVKQACKFAKEHALS-N-GPIVLEMD 257 (362)
T ss_pred CeEEECCCCHHHHHHHHHHHHHHHHh-C-CCEEEEEe
Confidence 01233 3556777788888888777 4 89999874
No 309
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=65.82 E-value=11 Score=35.61 Aligned_cols=96 Identities=10% Similarity=-0.000 Sum_probs=53.4
Q ss_pred CcEEEEEcCChhhHh----hHHHHHHhhhCCCc---EEEEecCCCccCCCCCCCC--CcchhhhccCccceeeec--CCc
Q 013746 76 KPGILLTVSGPGCVH----GLAGLSNGMINTWP---IVMISGSCDQKDFGRGDFQ--ELDQVEAVKPFSKFAVKA--KDI 144 (437)
Q Consensus 76 ~~~v~~~t~GpG~~n----~~~gi~~A~~~~~P---vl~I~g~~~~~~~~~~~~q--~~d~~~~~~~~~k~~~~v--~~~ 144 (437)
+..++++..|=|++. ..-++--|...+.| +|++.-+.-.........| ..+..+..+.+---..+| +++
T Consensus 139 ~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~ 218 (265)
T cd02016 139 DKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDP 218 (265)
T ss_pred CCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCH
Confidence 356777777766632 22233335556777 8888754211100000000 112223333332223333 477
Q ss_pred CchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 145 TEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 145 ~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+.+.+.+++|++.++.++ ||+.|++=.
T Consensus 219 ~aV~~a~~~A~~~~r~g~-gp~lIe~~t 245 (265)
T cd02016 219 EAVVRATRLALEYRQKFK-KDVVIDLVC 245 (265)
T ss_pred HHHHHHHHHHHHHHHhcC-CCEEEEEEE
Confidence 889999999999999986 899998753
No 310
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.47 E-value=20 Score=35.69 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=35.9
Q ss_pred HHHHHHHHHH-hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 207 DIDKAVSLLK-EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 207 ~~~~~~~~l~-~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
.+.+.+-.++ +..++.++++. ..|+++.++|+..|++.++|++.++.
T Consensus 117 tc~KlA~y~kkkG~K~~LvcaD-TFRagAfDQLkqnA~k~~iP~ygsyt 164 (483)
T KOG0780|consen 117 TCTKLAYYYKKKGYKVALVCAD-TFRAGAFDQLKQNATKARVPFYGSYT 164 (483)
T ss_pred eHHHHHHHHHhcCCceeEEeec-ccccchHHHHHHHhHhhCCeeEeccc
Confidence 4556666665 45677777764 56789999999999999999998543
No 311
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=65.47 E-value=12 Score=40.72 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCC--CCCCcccHHHHhchhcCCE
Q 013746 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAATAARSLAIGQCDV 280 (437)
Q Consensus 205 ~~~~~~~~~~l~~a--~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~--~hp~~~G~~~~~~l~~aDl 280 (437)
+++++.+++.|++. ++..++.|..... +..-.+++|++.+|.+.+.+...-..++. ...+.++. ...-++++|+
T Consensus 290 dEAl~~iA~kL~~~~~~~ia~i~g~~~~~-E~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~-si~dIe~AD~ 367 (687)
T PRK09130 290 DEAFAAIAAKIKGTPGEKIAAIAGDLADV-ESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNT-TIAGIEEADA 367 (687)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCCH-HHHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCC-CHHHHHhCCE
Confidence 66788888888875 4567777776532 34457899999999887754321001110 01111111 1123689999
Q ss_pred EEEEcCcCCCccc-cC-CC-CCCCCC-ceEEEhH
Q 013746 281 ALVVGARLNWLLH-FG-EP-PKWSKD-VKFVLVD 310 (437)
Q Consensus 281 vl~iG~~~~~~~~-~~-~~-~~~~~~-~~~i~vd 310 (437)
||++|+...+... .. .. ..+..+ .+++.||
T Consensus 368 IlliG~Np~~eaPvl~~rirka~~~g~~kIivId 401 (687)
T PRK09130 368 ILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIG 401 (687)
T ss_pred EEEEccCcccccHHHHHHHHHHHHcCCCeEEEEc
Confidence 9999998743221 10 00 112234 4888888
No 312
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=65.14 E-value=15 Score=41.51 Aligned_cols=106 Identities=8% Similarity=-0.134 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHH----HHhc
Q 013746 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSLA 274 (437)
Q Consensus 205 ~~~~~~~~~~l~~------a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~----~~~~ 274 (437)
+++++.+++.|++ .+...++.|.+...........+|+..+|.+.......-+.....++..+|.. ...=
T Consensus 142 dEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~D 221 (912)
T TIGR03479 142 DEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKAHDSATSDD 221 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccCccCCchhh
Confidence 4567777777654 33333333444322122234568999998764332211122223334444421 1223
Q ss_pred hhcCCEEEEEcCcCCCccccC--CC-CCCCCCceEEEhH
Q 013746 275 IGQCDVALVVGARLNWLLHFG--EP-PKWSKDVKFVLVD 310 (437)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~~--~~-~~~~~~~~~i~vd 310 (437)
+.+||+||++|+......... +. .....++|+|.||
T Consensus 222 ~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvId 260 (912)
T TIGR03479 222 WFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIA 260 (912)
T ss_pred hhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEEC
Confidence 578999999999875432211 10 0112467999998
No 313
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=63.33 E-value=4 Score=38.47 Aligned_cols=143 Identities=15% Similarity=0.024 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH-H-HHHHHHhCCCcEeeccc-----------hHHHHHHHHH-HHhHhCCcEEEE
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT-S-LANRAVQLGVRFIAFHN-----------EQSAGYAASA-YGYLTGKPGILL 81 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~-~-l~~al~~~~i~~i~~~~-----------E~~A~~~A~g-yar~tg~~~v~~ 81 (437)
-..+.++.+.+.|.+.|.-.-+.... . +.+.| .+..++|.... |.--+.+=.| ++++.+..++ +
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nll~e~L-~~~a~lI~G~~~rp~~Mm~Gld~s~D~v~fiGYHa~ag~~~gv-L 115 (263)
T cd08770 38 EVVAACEGAIEAGATEIVVKDAHGSGRNILPSKL-PDNVKLIRGWSGHPYCMVEGLDESFDAVMFIGYHSAAGSPGNP-L 115 (263)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHC-CcceEEEeCCCCCcchHhhccccCccEEEEEecCCccCCCCCc-c
Confidence 34567788889999999988653222 2 23323 34566664422 1111111234 3333222233 2
Q ss_pred EcCChh-hHh----------hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHH
Q 013746 82 TVSGPG-CVH----------GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKC 150 (437)
Q Consensus 82 ~t~GpG-~~n----------~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~ 150 (437)
.|+--| ..+ ..-.-+-|-.-++||+++||+.......+..+-.+.....-+.+. ++....+|+.+.+.
T Consensus 116 ~HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGD~~~~~ea~~~~P~~~tv~vK~~~g-~aa~~~~p~~a~~~ 194 (263)
T cd08770 116 AHTLTGGVSYVKINGEIASEFLINAYTAAYLGVPVVFVSGDAGLCAEAKELNPNIVTVPVKEGFG-GATISIHPGLACKE 194 (263)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEeeeeec-cccccCCHHHHHHH
Confidence 333111 111 111223345579999999998765432222222222233334445 66667788999999
Q ss_pred HHHHHHHhhcC
Q 013746 151 VAQVLERAVSG 161 (437)
Q Consensus 151 l~~A~~~a~~~ 161 (437)
|+++.+.|...
T Consensus 195 I~~~~~~Al~~ 205 (263)
T cd08770 195 IRKGVKKALSG 205 (263)
T ss_pred HHHHHHHHHhc
Confidence 99999888543
No 314
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=63.12 E-value=22 Score=37.67 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC----------CC---CCC-CCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------GR---GDF-QELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----------~~---~~~-q~~d~ 127 (437)
+.-+|.|.+.+. +|+.+|++-=| |+.=...-|..|.+.++|++++.-+...... +. ..+ ...|.
T Consensus 423 glpaaiGa~lA~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 501 (566)
T PRK07282 423 GIPAAIGAKIANPDKEVILFVGDG-GFQMTNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDF 501 (566)
T ss_pred hhhHhheeheecCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCH
Confidence 333456665554 46666655333 3444456899999999999999866542210 01 112 23577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+.+.+-.+..++++++++.+.++ ++ .+ .+|+.|++..|
T Consensus 502 ~~lA~a~G~~~~~v~~~~el~~al~-~~---~~--~~p~lIeV~v~ 541 (566)
T PRK07282 502 QLMAQAYGIKHYKFDNPETLAQDLE-VI---TE--DVPMLIEVDIS 541 (566)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHH-Hh---cC--CCCEEEEEEeC
Confidence 7888888888899999888876664 22 22 48999999876
No 315
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=62.73 E-value=25 Score=35.98 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
..+.+++..+.+..+.+.++.....+..+.+++..+++++++|++...
T Consensus 110 TtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~ 157 (437)
T PRK00771 110 TTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157 (437)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC
Confidence 345667777776656667777777777889999999999999987654
No 316
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=61.89 E-value=21 Score=33.90 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
.+.+.+++++++|.+++| ++++|.|....-+ ..+.....++|.|+.... + . .........+.+-|++|
T Consensus 113 id~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a-~~~~~~l~~~g~~~~~~~-------~--~-~~~~~~~~~~~~~D~vI 180 (284)
T PRK11302 113 LDPSAINRAVDLLTQAKK-ISFFGLGASAAVA-HDAQNKFFRFNVPVVYFD-------D--I-VMQRMSCMNSSDGDVVV 180 (284)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEcchHHHHH-HHHHHHHHhcCCceEecC-------C--H-HHHHHHHHhCCCCCEEE
Confidence 457789999999999976 8888888543322 233333345777766421 1 1 11111123456789999
Q ss_pred EEcC
Q 013746 283 VVGA 286 (437)
Q Consensus 283 ~iG~ 286 (437)
++..
T Consensus 181 ~iS~ 184 (284)
T PRK11302 181 LISH 184 (284)
T ss_pred EEeC
Confidence 8853
No 317
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=61.30 E-value=8.2 Score=29.57 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcEEEEcCCcCccchH-HHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEE
Q 013746 220 KPLIVFGKGAAYARAE-GELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (437)
Q Consensus 220 rPvil~G~g~~~~~~~-~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (437)
|.++++|.|...+-.. ..+++.+++.|+.+........ .......++|++|.-
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~------------~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSIL------------EVEEIADDADLILLT 54 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETT------------THHHHHTT-SEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEeccc------------ccccccCCCcEEEEc
Confidence 4689999999777655 8899999999987765433211 122345679998764
No 318
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=61.16 E-value=23 Score=37.95 Aligned_cols=104 Identities=19% Similarity=0.101 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCC---CCCCCCCcccHHHHhchhcCCEE
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL---LPDTHPLAATAARSLAIGQCDVA 281 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~---~~~~hp~~~G~~~~~~l~~aDlv 281 (437)
+++++.+++.|++.++..++.|.... ......+.+|++.+|.+-+.....-.. .+....+..|. ...-+.++|+|
T Consensus 289 deAl~~ia~kL~~i~~va~~~~~~~~-~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~-~~~di~~ad~i 366 (603)
T TIGR01973 289 AEALAIAAEKLKASSRIGGIAGPRSS-LEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNT-TLADIEEADLV 366 (603)
T ss_pred HHHHHHHHHHHhccCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCC-CHHHHHhCCEE
Confidence 66788888999887666776665432 123456789999999764432211000 11111122231 12235789999
Q ss_pred EEEcCcCCCccccC--CC-CCCCCC-ceEEEhH
Q 013746 282 LVVGARLNWLLHFG--EP-PKWSKD-VKFVLVD 310 (437)
Q Consensus 282 l~iG~~~~~~~~~~--~~-~~~~~~-~~~i~vd 310 (437)
|++|+.+.+..... .. ....++ +++|.||
T Consensus 367 l~~G~N~~~s~p~~~~~i~~a~~~ggaklivid 399 (603)
T TIGR01973 367 LLVGADLRQEAPLLNLRLRKAVKKGGAKVALIG 399 (603)
T ss_pred EEEccCchhhhHHHHHHHHHHHhcCCcEEEEEC
Confidence 99999875432111 00 011123 7999998
No 319
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.08 E-value=11 Score=29.87 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=27.2
Q ss_pred CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 220 rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
|.++++|+|+..+-..+.++++++..|+++-..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~ 34 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAA 34 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 457888999776778899999999999987543
No 320
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=60.83 E-value=2 Score=40.61 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH-HHH-HHHHhCCCcEeeccchHHHHHHHH------------HHHhHhCCcEEEE
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT-SLA-NRAVQLGVRFIAFHNEQSAGYAAS------------AYGYLTGKPGILL 81 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~-~l~-~al~~~~i~~i~~~~E~~A~~~A~------------gyar~tg~~~v~~ 81 (437)
-..+.++.+.+.|.+.|.-.-+.... .|. +.| .+..++|....-. -+|.. ||.-..|.+.-++
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L-~~~~~LI~G~~rp--~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL 114 (265)
T PF04951_consen 38 EVNAAIEGAFEAGATEVVVNDSHGSMRNLLPEEL-PPRARLIRGSPRP--LSMMEGLDESFDAVFFIGYHARAGTPRGVL 114 (265)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS--TTSEEEEES--T--TGGGTT--TT-SEEEEEEE---TTS-SSTT
T ss_pred HHHHHHHHHHhcCCeEEEEEecCCCCCCcChHHC-CcCeEEEeCCCCc--chhhhccccCcCEEEEEecCcccCCCCccc
Confidence 34677888899999999987654332 222 222 3456677542110 11112 2222222222222
Q ss_pred EcCChhhH------------hhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHH
Q 013746 82 TVSGPGCV------------HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPK 149 (437)
Q Consensus 82 ~t~GpG~~------------n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~ 149 (437)
.|+--|.. -..-.-+-|-.-++||+++||+.......+..+-.+-....-+.+..++....+|+.+.+
T Consensus 115 ~HT~~~~~i~~v~iNG~~~gE~~lna~~Ag~~GVPV~lVsGD~~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~ 194 (265)
T PF04951_consen 115 AHTYSGSVIHEVRINGREVGEFGLNAALAGYYGVPVVLVSGDDALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACE 194 (265)
T ss_dssp --SSSTTE-EEEEETTEEE-HHHHHHHHHHHTT--EEEEEEEHHHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHH
T ss_pred cceeccccceeEEECCEEcchhHHHHHHHhhcCCcEEEEeCcHHHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHH
Confidence 22222211 112222345567999999999876544333333333334455666777888889999999
Q ss_pred HHHHHHHHhhcC
Q 013746 150 CVAQVLERAVSG 161 (437)
Q Consensus 150 ~l~~A~~~a~~~ 161 (437)
.|+++.+.|...
T Consensus 195 ~i~~~a~~Al~~ 206 (265)
T PF04951_consen 195 RIREAAKEALER 206 (265)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 999999888753
No 321
>PRK13938 phosphoheptose isomerase; Provisional
Probab=60.34 E-value=75 Score=28.62 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHH--HHHH------hCCCcEeeccchHHHHHHHHH--------HHh---HhC
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLA--NRAV------QLGVRFIAFHNEQSAGYAASA--------YGY---LTG 75 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~--~al~------~~~i~~i~~~~E~~A~~~A~g--------yar---~tg 75 (437)
..++.+++.|++.|-=++||+-++...... ..|. ++.+..+....+. +-..|.+ |++ ...
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~-~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANS-SHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCCh-HHHHHhhccccHHHHHHHHHHhcC
Confidence 467888888999998899999776554332 2232 1123333322222 2221111 122 122
Q ss_pred Cc-EEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 76 KP-GILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 76 ~~-~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
++ -++++-|..| .-+.+.++..|...+.|++.||+....
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 22 2444444444 677888999999999999999997643
No 322
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=59.83 E-value=1.1e+02 Score=29.15 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=68.8
Q ss_pred eecCCcCchHHHHHHHHHHhhcCC----Cc-eeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHH
Q 013746 139 VKAKDITEVPKCVAQVLERAVSGR----PG-GCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVS 213 (437)
Q Consensus 139 ~~v~~~~~~~~~l~~A~~~a~~~~----~G-Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.+..+.++..+.++++++..-.-. +| -|+| -.+++... .+-......++.+..+++
T Consensus 8 ~~~~syk~~r~sv~~~lel~gg~~~~i~~G~~VlL--KPN~lta~-----------------ppe~~~tThPevv~Av~~ 68 (293)
T COG2006 8 VRCESYKDTRKSVRTVLELLGGLEAFISPGDRVLL--KPNLLTAD-----------------PPEAPCTTHPEVVAAVAE 68 (293)
T ss_pred EecCCcHHHHHHHHHHHHHccccccccCCCCEEEe--cCccccCC-----------------CCCCCCccCHHHHHHHHH
Confidence 455666788888888888764311 11 1222 11221111 011122345778899999
Q ss_pred HHHhCC-CcEEEEcCCcCc-cchH--HHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEc
Q 013746 214 LLKEAK-KPLIVFGKGAAY-ARAE--GELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (437)
Q Consensus 214 ~l~~a~-rPvil~G~g~~~-~~~~--~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (437)
+.+++. .|++.--.|-.. ++.. .-+.++||++|++++.-- +++-+-. ..++=+....+.+.++|++|.+=
T Consensus 69 ~v~e~g~ep~vgd~pg~~st~~vlk~~Gi~dla~~~~~~iv~F~-~~~~~~~-s~~~~~~~ia~~vl~aD~vI~LP 142 (293)
T COG2006 69 VVKEAGGEPVVGDSPGFGSTSGVLKTTGILDLAEALGLEIVNFD-TKRYVLG-SEWFQGLKIAEPVLEADVVINLP 142 (293)
T ss_pred HHHHhCCcceEecCCCCccHHHHHHHhCHHHHHHHcCCceeeec-cCceEec-cccccCcccchhhhccceEEecc
Confidence 998876 444433222111 1222 237899999999999765 4443322 12222222345667999999875
No 323
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=59.48 E-value=8.8 Score=37.79 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcCccc----hHHHHHHHHHHhCCCeeeC-CCCCCCCC
Q 013746 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR----AEGELKKLVESTGIPFLPT-PMGKGLLP 260 (437)
Q Consensus 202 ~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~----~~~~l~~lae~~g~pv~tt-~~gkg~~~ 260 (437)
..+.+.++.+ +...-|-+|+.|.|.-+.. ..+.|++++++ |+||+.+ .-..|.+.
T Consensus 220 G~~~~~l~~~---~~~~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~-Gi~VV~~Sr~~~G~v~ 279 (335)
T PRK09461 220 GISAEVVRNF---LRQPVKALILRSYGVGNAPQNPALLQELKEASER-GIVVVNLTQCMSGKVN 279 (335)
T ss_pred CCCHHHHHHH---HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHC-CCEEEEeCCCCCCcCC
Confidence 3445444433 3344589999998885533 44556666654 8997654 44566553
No 324
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=59.47 E-value=86 Score=27.39 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHH--HHHH------hCCCcEeecc---chHHHHHHHHHH--------HhHhC
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLA--NRAV------QLGVRFIAFH---NEQSAGYAASAY--------GYLTG 75 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~--~al~------~~~i~~i~~~---~E~~A~~~A~gy--------ar~tg 75 (437)
..++.|.+.+.+.+-=++||.-++...... ..+. +.++..+... +|..+..--.+| +..-.
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 455666666666666677887665444322 1222 1255554433 222221100111 11112
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 76 ~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
+--++++.|-.| ..+.+..+..|...++|+|.||+....
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 222444444334 568889999999999999999987543
No 325
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=59.47 E-value=7.5 Score=37.59 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCCHH--HHHHHHHcCcccccC
Q 013746 384 GTWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISSI 437 (437)
Q Consensus 384 ~~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~~~--eL~Ta~r~~l~i~~i 437 (437)
++.|-.|-.+|-..|+++|. .+.-++++-|||+..-.-- .+-.|.=++||++.|
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFv 221 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFV 221 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEE
Confidence 56788899999999988884 3456788999999875421 355566788988754
No 326
>PRK15482 transcriptional regulator MurR; Provisional
Probab=59.37 E-value=34 Score=32.63 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
+.+.+++++++|.+|+| +.+.|.| ........+.....++|.++...... .........+.+-|++|+
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G-~S~~~A~~l~~~l~~~g~~~~~~~d~----------~~~~~~~~~~~~~Dv~i~ 188 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLG-GSALVGRDLSFKLMKIGYRVACEADT----------HVQATVSQALKKGDVQIA 188 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeC-hhHHHHHHHHHHHHhCCCeeEEeccH----------hHHHHHHhcCCCCCEEEE
Q ss_pred EcCc
Q 013746 284 VGAR 287 (437)
Q Consensus 284 iG~~ 287 (437)
+..+
T Consensus 189 iS~s 192 (285)
T PRK15482 189 ISYS 192 (285)
T ss_pred EeCC
No 327
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=59.33 E-value=57 Score=32.11 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccc----hHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH---HHHhchh
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYAR----AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA---ARSLAIG 276 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~----~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~---~~~~~l~ 276 (437)
+.+.++++++++.++++++++.|.+..++. ....+..|+..+|.- ...|.+.+...+|++--. ...++++
T Consensus 229 ~~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~~~~~~~~~al~ 305 (374)
T cd00368 229 PAETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSAPDANRVRAALK 305 (374)
T ss_pred CHHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcCCCHHHHHHHHh
Confidence 456789999999999999999999885432 233344555554441 112334444455544321 2335788
Q ss_pred cCCEEEEEcCcCCCc
Q 013746 277 QCDVALVVGARLNWL 291 (437)
Q Consensus 277 ~aDlvl~iG~~~~~~ 291 (437)
+.|++++++...+++
T Consensus 306 ~~~~~V~~d~~~~et 320 (374)
T cd00368 306 KLDFVVVIDIFMTET 320 (374)
T ss_pred CCCeEEEEecCCCcc
Confidence 899999998877653
No 328
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=59.19 E-value=1.5e+02 Score=27.40 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCcEEEEEcCChhhHhhHHHHHHhhh-CCCcEEEEecCCCccCCCCCCCC--Ccchh------hhccCc-----cceeee
Q 013746 75 GKPGILLTVSGPGCVHGLAGLSNGMI-NTWPIVMISGSCDQKDFGRGDFQ--ELDQV------EAVKPF-----SKFAVK 140 (437)
Q Consensus 75 g~~~v~~~t~GpG~~n~~~gi~~A~~-~~~Pvl~I~g~~~~~~~~~~~~q--~~d~~------~~~~~~-----~k~~~~ 140 (437)
.|.=+|-.-+.-|+|-....+..|.. ..+|+-.+. +|+. |.|- +-+.. .+++.+ +--+.+
T Consensus 23 dRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MI--RPRg----GdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt 96 (241)
T COG3142 23 DRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMI--RPRG----GDFVYSDDELEIMLEDIRLARELGVQGVVLGALT 96 (241)
T ss_pred ceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEE--ecCC----CCcccChHHHHHHHHHHHHHHHcCCCcEEEeeec
Confidence 35566777777888999988998887 899998887 2221 2221 11111 111111 111111
Q ss_pred cCCcCch-HHHHHHHHHHhhcCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhC-
Q 013746 141 AKDITEV-PKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEA- 218 (437)
Q Consensus 141 v~~~~~~-~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a- 218 (437)
.. .++ ...+++-+..|. +=+|...--+|....+ ....+.+...+-.+....-...+..+.++.+.++++.+
T Consensus 97 ~d--g~iD~~~le~Li~aA~---gL~vTFHrAFD~~~d~--~~ale~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~ 169 (241)
T COG3142 97 AD--GNIDMPRLEKLIEAAG---GLGVTFHRAFDECPDP--LEALEQLIELGVERILTSGGKASALEGLDLLKRLIEQAK 169 (241)
T ss_pred CC--CccCHHHHHHHHHHcc---CCceeeehhhhhcCCH--HHHHHHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhc
Confidence 11 111 122222222221 1344444444433221 11111111110001111222334456688889999877
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|+.|++|+|++ .+-+.+|.+++|+--+.
T Consensus 170 gri~Im~GaGV~----~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 170 GRIIIMAGAGVR----AENIAELVLLTGVTEVH 198 (241)
T ss_pred CCEEEEeCCCCC----HHHHHHHHHhcCchhhh
Confidence 799999999986 34578888888875443
No 329
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=58.79 E-value=20 Score=29.25 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeec
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAF 57 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~ 57 (437)
....+++.+.+.|++.+.-.||.....+.+.+++.|++++..
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 345567777888999999999999899999888899998853
No 330
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.91 E-value=20 Score=32.37 Aligned_cols=50 Identities=28% Similarity=0.270 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
..+++..++..|.-|++|+|=+-+... +-..+++.+|++.+|+.+-...+
T Consensus 55 A~eA~raAaA~LlLAk~PVISVNGN~A-AL~p~e~v~La~~~~aklEVNLF 104 (256)
T COG1701 55 ALEAIRAAAAALLLAKHPVISVNGNVA-ALVPEEVVELAEATGAKLEVNLF 104 (256)
T ss_pred HHHHHHHHHHHHHhccCCeEEEcCcee-eeCcHHHHHHHHHhCCceEEEee
Confidence 355677788888899999998876653 35678999999999998765543
No 331
>PRK02399 hypothetical protein; Provisional
Probab=57.80 E-value=1.8e+02 Score=29.41 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=61.9
Q ss_pred HHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecC----CcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 95 LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK----DITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 95 i~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~----~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+..|-..++|.|+..|..+.-.+ ++.+++...=-=|++-++.-+++ ++++..+.= +.+..-++..+|||-+-|
T Consensus 264 l~Aa~~~gIP~Vvs~GalDmVnF--g~~~tvPe~f~~R~~~~HNp~vTlmRTt~eE~~~~g-~~ia~kLn~a~gpv~vll 340 (406)
T PRK02399 264 LEAAARTGIPQVVSPGALDMVNF--GAPDTVPEKFRGRLLYKHNPQVTLMRTTPEENRQIG-RWIAEKLNRAKGPVAFLI 340 (406)
T ss_pred HHHHHHcCCCEEecCCceeeeec--CCcccccHhhcCCcceecCCcceeeecCHHHHHHHH-HHHHHHHhcCCCCeEEEE
Confidence 34466779999999998765433 44444432111255555555554 444432222 222222344569999999
Q ss_pred Ccchhccc-cchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCcc
Q 013746 171 PTDVLHQT-ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232 (437)
Q Consensus 171 P~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~ 232 (437)
|..=+... .+- .+-..|..+...++.+.+.| ...++++-.-..++..
T Consensus 341 P~~G~S~~D~~G--------------~~f~Dpead~alf~~l~~~l-~~~~~v~~~~~hIND~ 388 (406)
T PRK02399 341 PLGGVSALDRPG--------------QPFHDPEADAAFFDALEETV-TETRRLIEVPAHINDP 388 (406)
T ss_pred eCCCCccccCCC--------------CCccChhHHHHHHHHHHHhC-CCCceEEECCCCCCCH
Confidence 97632211 110 11122333344445554555 5567777777666543
No 332
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=57.53 E-value=56 Score=30.66 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=49.1
Q ss_pred EEEcCChhhHh---hHHHHHHhhhCCCcEEEEecCCCccCCC-C--CCCCCcchhhhccCccceeeecC--CcCchHHHH
Q 013746 80 LLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFG-R--GDFQELDQVEAVKPFSKFAVKAK--DITEVPKCV 151 (437)
Q Consensus 80 ~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~--~~~q~~d~~~~~~~~~k~~~~v~--~~~~~~~~l 151 (437)
+++..|=|..+ ..-++..|...++|.|++.-+....... . ......|....++.+--...++. +.+++
T Consensus 130 v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l---- 205 (255)
T cd02012 130 VYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEI---- 205 (255)
T ss_pred EEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHH----
Confidence 33344666665 4678888989898844444333222111 1 11112355667777644455665 54444
Q ss_pred HHHHHHhhcCCCceeEEEcCcc
Q 013746 152 AQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 152 ~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+|++.|...+.+|+.|++-..
T Consensus 206 ~~al~~a~~~~~~P~~I~~~t~ 227 (255)
T cd02012 206 LAALEEAKKSKGKPTLIIAKTI 227 (255)
T ss_pred HHHHHHHHHcCCCCEEEEEEee
Confidence 4455554443347898887654
No 333
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=57.45 E-value=15 Score=36.36 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCC---cccH--HHHhc
Q 013746 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL---AATA--ARSLA 274 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~-----rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~---~~G~--~~~~~ 274 (437)
+++++.+++.|++.+ +.+.+.++..........+.+|...+|.+.+.+...-...+....+ ..+. ....-
T Consensus 74 deAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 153 (374)
T cd00368 74 DEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLAD 153 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHHH
Confidence 456777777777652 4554444333222333445667888888766543321111110000 0000 01123
Q ss_pred hhcCCEEEEEcCcCCCcccc--CCC-CCCCCCceEEEhH
Q 013746 275 IGQCDVALVVGARLNWLLHF--GEP-PKWSKDVKFVLVD 310 (437)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~--~~~-~~~~~~~~~i~vd 310 (437)
+++||+||.+|+.+...... ... ....+++++|.||
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~id 192 (374)
T cd00368 154 IENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVID 192 (374)
T ss_pred HhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEc
Confidence 56899999999987532211 000 0112467899998
No 334
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=57.20 E-value=23 Score=27.78 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=40.2
Q ss_pred EEEcCCcCcc-chHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCC
Q 013746 223 IVFGKGAAYA-RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 223 il~G~g~~~~-~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~ 290 (437)
+-+|.|...+ -+.+.|++.+++.|+.+-....+...+.... ....+.++|+||.+|....+
T Consensus 5 ~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l-------~~~~i~~Ad~vi~~~~~~~~ 66 (96)
T cd05569 5 TACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENEL-------TAEDIAEADAVILAADVPVD 66 (96)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcC-------CHHHHhhCCEEEEecCCCCc
Confidence 3445555443 3568899999999999886655543222211 12457899999999976543
No 335
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=57.20 E-value=27 Score=35.25 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhC------CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCC-----CCCCcccHHHHh
Q 013746 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD-----THPLAATAARSL 273 (437)
Q Consensus 205 ~~~~~~~~~~l~~a------~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~-----~hp~~~G~~~~~ 273 (437)
+++++.+++.|++. +...++.|... .......+.+|++.+|.|.+........... .+. ..+. ...
T Consensus 72 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~ 148 (414)
T cd02772 72 ETALEYVAEGLSAIIKKHGADQIGALASPHS-TLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAP-WLGM-PIA 148 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecCCC-CcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCC-CCCC-cHH
Confidence 45667777777653 23333444332 2234457889999999987643211110000 000 0111 122
Q ss_pred chhcCCEEEEEcCcCCCccccC--CCC-CCCCCceEEEhH
Q 013746 274 AIGQCDVALVVGARLNWLLHFG--EPP-KWSKDVKFVLVD 310 (437)
Q Consensus 274 ~l~~aDlvl~iG~~~~~~~~~~--~~~-~~~~~~~~i~vd 310 (437)
-++++|+||.+|+......... +.. ....++++|.||
T Consensus 149 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~id 188 (414)
T cd02772 149 EISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAIN 188 (414)
T ss_pred HHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEe
Confidence 3678999999999875322110 000 112467899988
No 336
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=57.09 E-value=20 Score=36.88 Aligned_cols=85 Identities=26% Similarity=0.272 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHH-hCCCeeeCCCCCCCCCCCCCCccc-HHHHhchhcCCEEE
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKGLLPDTHPLAAT-AARSLAIGQCDVAL 282 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~-~g~pv~tt~~gkg~~~~~hp~~~G-~~~~~~l~~aDlvl 282 (437)
+++++++++.|++.+.-+.+.|.+.........+.+|++. +|.+-+... +............+ .....-+.++|+||
T Consensus 72 deAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~~~~~~~~~~~~~~di~~ad~il 150 (472)
T cd02771 72 NEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAEILRNGPIYIPSLRDIESADAVL 150 (472)
T ss_pred HHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhhhhcccCCCCCCHHHHHhCCEEE
Confidence 5678888888887763333444332222233456788875 665543211 11100000000000 01122357999999
Q ss_pred EEcCcCCC
Q 013746 283 VVGARLNW 290 (437)
Q Consensus 283 ~iG~~~~~ 290 (437)
.+|+.+.+
T Consensus 151 ~~G~n~~~ 158 (472)
T cd02771 151 VLGEDLTQ 158 (472)
T ss_pred EEeCCccc
Confidence 99998754
No 337
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.07 E-value=15 Score=31.65 Aligned_cols=40 Identities=23% Similarity=0.529 Sum_probs=29.4
Q ss_pred CCCc-EEEEcCCcCcc----chHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 218 AKKP-LIVFGKGAAYA----RAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 218 a~rP-vil~G~g~~~~----~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
.++| ++++|.-+... -..++..+||+++|+|++.|....|
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 3555 66777766432 3457789999999999999987655
No 338
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=56.89 E-value=1.2e+02 Score=27.04 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
...++.+++.++++||+.|+.+-|-...... .+ .++..+-+.... ...-+..| +-+..-+-+.+....
T Consensus 33 ~e~a~~vld~a~~~gv~~iitLgG~~~~~~~---tr--p~V~~~at~~el----~~~l~~~g---~~~~~~~g~i~G~~g 100 (188)
T TIGR00162 33 YELVNAIIDVAKKYGARMIYTLGGYGVGKLV---EE--PYVYGAATSPEL----VEELKEHG---VKFREPGGGIIGASG 100 (188)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcCCCCC---CC--CceEEEeCCHHH----HHHHHhcC---CeeecCCCccccHHH
Confidence 3589999999999999999999885432111 12 233333222211 11112111 111111111222222
Q ss_pred H-HHHhhhCCCcEEEEecCCCccC
Q 013746 94 G-LSNGMINTWPIVMISGSCDQKD 116 (437)
Q Consensus 94 g-i~~A~~~~~Pvl~I~g~~~~~~ 116 (437)
- +..|...++|.+.+.+..+...
T Consensus 101 lLl~~a~~~gi~ai~L~~e~p~y~ 124 (188)
T TIGR00162 101 LLLGVSELEGIPGACLMGETPGYM 124 (188)
T ss_pred HHHHHHHHCCCCeEEEEEeCCCCC
Confidence 2 3457788999999999887654
No 339
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=56.83 E-value=33 Score=34.45 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCE
Q 013746 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDl 280 (437)
..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+.. +. ++-| +|-.-.. .+.+.+ .++|+
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~-f~--~v~~--np~~~~v~~~~~~~~~~~~D~ 91 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVI-YD--GTQP--NPTTENVAAGLKLLKENNCDS 91 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eC--CCCC--CcCHHHHHHHHHHHHHcCCCE
Confidence 345666666654 5899999988776667778888888888876421 11 1222 2332211 111222 47999
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
||.||.
T Consensus 92 IiaiGG 97 (383)
T PRK09860 92 VISLGG 97 (383)
T ss_pred EEEeCC
Confidence 999995
No 340
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=55.83 E-value=1.2e+02 Score=32.28 Aligned_cols=154 Identities=13% Similarity=0.089 Sum_probs=90.8
Q ss_pred cCCcHHHHHHHHHHhcCC--CEEEec----CCCChHHHHHHHHhCCCcEe-eccchHHHHHHHHHHHhHhCCcEEEEEcC
Q 013746 12 AQIDGNTLAAKSLSLFGA--THMFGV----VGIPVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVS 84 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv--~~vFg~----pG~~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~ 84 (437)
...+.++++.+.|.+..- +.++++ |+.+-+.-+.. +-.-||+ ...-||.|+-+|.|.|...-||.|++-++
T Consensus 314 ~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~--~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYST 391 (627)
T COG1154 314 SAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSK--KFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYST 391 (627)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHH--hCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecH
Confidence 345677888888777653 356655 44333322221 1123344 56789999999999999999998876532
Q ss_pred ChhhHh-hH-HHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 85 GPGCVH-GL-AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 85 GpG~~n-~~-~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+++ +. -=+..-...+.||++..-....--..-..+|-+=-.++++.+.......++- .+.+++.+..|....
T Consensus 392 ---FLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~d---e~el~~ml~ta~~~~ 465 (627)
T COG1154 392 ---FLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRD---EEELRQMLYTALAQD 465 (627)
T ss_pred ---HHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCC---HHHHHHHHHHHHhcC
Confidence 111 01 1244555689999998643322111112355443367888887655554432 233344555555555
Q ss_pred CceeEEEcCcc
Q 013746 163 PGGCYLDLPTD 173 (437)
Q Consensus 163 ~GPv~l~iP~d 173 (437)
-||+.+-.|..
T Consensus 466 ~gP~AiRyPrg 476 (627)
T COG1154 466 DGPVAIRYPRG 476 (627)
T ss_pred CCCeEEEecCC
Confidence 58999999975
No 341
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=55.23 E-value=28 Score=33.86 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC---CCCCCCCCC
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM---GKGLLPDTH 263 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~---gkg~~~~~h 263 (437)
|.+|+ .++-.|+|.......+.+++||+.+|.-|-+|.. ..|.+|.++
T Consensus 191 L~~A~-vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~~ 241 (312)
T PRK11916 191 LSKAK-RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERER 241 (312)
T ss_pred cccCC-EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChhc
Confidence 44554 4555566766666789999999999999988854 235676653
No 342
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=54.48 E-value=14 Score=36.78 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccch----HHHHHHHHHHhCC
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARA----EGELKKLVESTGI 247 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~----~~~l~~lae~~g~ 247 (437)
..+++.|.++++|+|++|.++..... ...+..|++..+.
T Consensus 212 ~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (366)
T cd02774 212 HLFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNNEN 254 (366)
T ss_pred hHHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhhcC
Confidence 35678899999999999999965433 3445566666433
No 343
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=54.30 E-value=34 Score=34.31 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCE
Q 013746 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDl 280 (437)
..++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+.. +. ++- .+|..-.. ...+.+ .++|+
T Consensus 16 g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~-~~--~v~--~~p~~~~v~~~~~~~~~~~~D~ 90 (382)
T PRK10624 16 GAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEI-YD--GVK--PNPTIEVVKEGVEVFKASGADY 90 (382)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEE-eC--CCC--CCcCHHHHHHHHHHHHhcCCCE
Confidence 346666666654 4789999998777666788899988888876532 21 121 23322111 111222 37999
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
||.||.
T Consensus 91 IIaiGG 96 (382)
T PRK10624 91 LIAIGG 96 (382)
T ss_pred EEEeCC
Confidence 999995
No 344
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=54.23 E-value=51 Score=34.94 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=63.1
Q ss_pred HHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe---------cCCCccCCCC---C-CCCCcchhhhcc
Q 013746 66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS---------GSCDQKDFGR---G-DFQELDQVEAVK 132 (437)
Q Consensus 66 ~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~---------g~~~~~~~~~---~-~~q~~d~~~~~~ 132 (437)
.|.|.+..+.+..+++.--|.=.=|.+++|.+|-.++.+++++. |++|....+. + .-..++..++.|
T Consensus 436 ~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r 515 (640)
T COG4231 436 IAGGLSFASTKKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVR 515 (640)
T ss_pred hccccccccCCceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhh
Confidence 34555544445566665444445566889999999999999884 4444332211 1 123467778888
Q ss_pred CccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 133 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
.+.....+.-+|-++.++ .++++.|+.-+ ||..|-.
T Consensus 516 ~~Gv~~v~~vdp~~~~~~-~~~~keale~~-gpsViia 551 (640)
T COG4231 516 AMGVEDVETVDPYDVKEL-SEAIKEALEVP-GPSVIIA 551 (640)
T ss_pred hcCceeeeccCCcchHHH-HHHHHHHhcCC-CceEEEE
Confidence 875444444446665444 46777777754 7777643
No 345
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=54.20 E-value=34 Score=34.50 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=45.0
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..- . ++- .+|-.--. .+.+.. .++|+|
T Consensus 36 ~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~-~--~v~--~~P~~~~v~~~~~~~r~~~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLW-P--CPV--GEPCITDVCAAVAQLRESGCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEE-C--CCC--CCcCHHHHHHHHHHHHhcCcCEE
Confidence 45555555554 47888887877766677788888888888876421 1 111 12322111 111222 479999
Q ss_pred EEEcCc
Q 013746 282 LVVGAR 287 (437)
Q Consensus 282 l~iG~~ 287 (437)
|.||.-
T Consensus 111 iavGGG 116 (395)
T PRK15454 111 IAFGGG 116 (395)
T ss_pred EEeCCh
Confidence 999943
No 346
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=53.99 E-value=6.2 Score=41.19 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC------cEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCccc---HHHHhch
Q 013746 205 NSDIDKAVSLLKEAKK------PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT---AARSLAI 275 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~r------Pvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G---~~~~~~l 275 (437)
+++++.+++.|++.+. ..++.+.+............|.+.+|.+-+......+..-..+...+| ....+-+
T Consensus 76 deAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~~~~~~~~d~ 155 (501)
T cd02766 76 DEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGASLGNDPEDM 155 (501)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCCCCCCCHHHH
Q ss_pred hcCCEEEEEcCcCCCccccCCCCCC---CCCceEEEhH
Q 013746 276 GQCDVALVVGARLNWLLHFGEPPKW---SKDVKFVLVD 310 (437)
Q Consensus 276 ~~aDlvl~iG~~~~~~~~~~~~~~~---~~~~~~i~vd 310 (437)
.++|+||++|+...+.......... ..++|+|.||
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvD 193 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVID 193 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEEC
No 347
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=53.52 E-value=91 Score=27.27 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~ 93 (437)
--+.+++.|.+.+-=++||.-++... .+...+..-|++++...+.. ....+.+=.+++.+...-..+.+.
T Consensus 22 ~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~--------~~~~~~~D~vI~iS~sG~t~~~i~ 93 (179)
T cd05005 22 ELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT--------TPAIGPGDLLIAISGSGETSSVVN 93 (179)
T ss_pred HHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC--------CCCCCCCCEEEEEcCCCCcHHHHH
Confidence 34667888888766677777444322 12222333466666543321 112333333444444444677788
Q ss_pred HHHHhhhCCCcEEEEecCCCcc
Q 013746 94 GLSNGMINTWPIVMISGSCDQK 115 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~~ 115 (437)
.+..|...++|+|.||+.....
T Consensus 94 ~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 94 AAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHCCCeEEEEECCCCCc
Confidence 8999999999999999976554
No 348
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=53.29 E-value=82 Score=27.53 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGL 92 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~ 92 (437)
--+.+++.|.+.+-=++||.-++... .+...+..-|+..+...+.. ....+.+ -++++-|..| .-+.+
T Consensus 19 ~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~--------~~~~~~~-Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 19 ELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT--------TPSIKKG-DLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc--------cCCCCCC-CEEEEEeCCCCcHHHH
Confidence 35667888888776677777554322 12222334466555443321 1223333 3444444555 44566
Q ss_pred HHHHHhhhCCCcEEEEecCCCcc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQK 115 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~ 115 (437)
..+..|...+.|++.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 78888999999999999876544
No 349
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=53.02 E-value=38 Score=33.90 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCE
Q 013746 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDl 280 (437)
..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+.. +.+ + +.+|-.-.. .....+ .++|+
T Consensus 14 g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-f~~---v-~~~p~~~~v~~~~~~~~~~~~D~ 88 (377)
T cd08176 14 GAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI-YDG---V-KPNPTITNVKDGLAVFKKEGCDF 88 (377)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHHHHHHHHHHhcCCCE
Confidence 345666666654 4789999888776556788888888888886532 211 1 113433211 111222 47999
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
||.||.
T Consensus 89 IIavGG 94 (377)
T cd08176 89 IISIGG 94 (377)
T ss_pred EEEeCC
Confidence 999996
No 350
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=52.98 E-value=47 Score=33.72 Aligned_cols=76 Identities=20% Similarity=0.126 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|.+....+..+.+.+..+..|+.+.. +. ++-+ +|-.-.. ...+.+ .++|+|
T Consensus 10 ~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~-f~--~v~~--~p~~~~v~~~~~~~~~~~~D~I 84 (414)
T cd08190 10 VTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEV-YD--DVRV--EPTDESFKDAIAFAKKGQFDAF 84 (414)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEE-eC--CCCC--CcCHHHHHHHHHHHHhcCCCEE
Confidence 35555555553 4899999998887666678888888887877643 11 1111 2322111 111222 368999
Q ss_pred EEEcCc
Q 013746 282 LVVGAR 287 (437)
Q Consensus 282 l~iG~~ 287 (437)
|.||.-
T Consensus 85 IaiGGG 90 (414)
T cd08190 85 VAVGGG 90 (414)
T ss_pred EEeCCc
Confidence 999944
No 351
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=52.89 E-value=38 Score=33.90 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+.+ .+|++|+.|......+..+.+++..++.|+.+.. +. ++ +.+|-.--. ...+.+ .++|+|
T Consensus 16 ~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~-~~--~v--~~~p~~~~v~~~~~~~~~~~~D~I 90 (379)
T TIGR02638 16 AIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYEL-FD--EV--KPNPTITVVKAGVAAFKASGADYL 90 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEE-EC--CC--CCCcCHHHHHHHHHHHHhcCCCEE
Confidence 45555555553 4899999998876666778888888888887642 11 11 123322111 111222 479999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 91 iaiGG 95 (379)
T TIGR02638 91 IAIGG 95 (379)
T ss_pred EEeCC
Confidence 99995
No 352
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=52.72 E-value=29 Score=35.01 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEEEE
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVALVV 284 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl~i 284 (437)
++++...+...+|++|+.|......+..+.+.+..+..|+.+..- .+ + +.+|-.-.. ...+.+ .++|+||.|
T Consensus 11 ~~~l~~~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f-~~--v--~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (398)
T cd08178 11 LPYALLDLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVF-SD--V--EPDPSLETVRKGLELMNSFKPDTIIAL 85 (398)
T ss_pred HHHHHHHhcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEe-cC--C--CCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344443445668999999887766667788888888888765421 11 1 122332211 111222 369999999
Q ss_pred cC
Q 013746 285 GA 286 (437)
Q Consensus 285 G~ 286 (437)
|.
T Consensus 86 GG 87 (398)
T cd08178 86 GG 87 (398)
T ss_pred CC
Confidence 95
No 353
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=52.25 E-value=45 Score=33.28 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHH-HHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA-RSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~-~~~~l--~~aDlv 281 (437)
.++++.+.+.+ .+|++|+.|......+..+.+++..++.++.+.. +.+ + +.+|-.-... ..+.+ .++|+|
T Consensus 13 ~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~---v-~~~p~~~~v~~~~~~~~~~~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTV-FDD---V-EADPPEAVVEAAVEAARAAGADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-ECC---C-CCCcCHHHHHHHHHHHHhcCCCEE
Confidence 45666666654 5899999998776556678888888887876542 111 1 2234332221 11222 378999
Q ss_pred EEEcCc
Q 013746 282 LVVGAR 287 (437)
Q Consensus 282 l~iG~~ 287 (437)
|.||.-
T Consensus 88 IaiGGG 93 (376)
T cd08193 88 IGFGGG 93 (376)
T ss_pred EEeCCc
Confidence 999943
No 354
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=52.08 E-value=54 Score=31.05 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
.+.+.+++++++|.+|+| +.+.|.|... .....+.....++|.++... ++.|.. ......+.+-|++|
T Consensus 113 ~~~~~l~~~~~~i~~a~~-I~i~G~G~s~-~~A~~~~~~l~~~g~~~~~~-------~d~~~~---~~~~~~~~~~Dv~I 180 (278)
T PRK11557 113 NSEEKLHECVTMLRSARR-IILTGIGASG-LVAQNFAWKLMKIGINAVAE-------RDMHAL---LATVQALSPDDLLL 180 (278)
T ss_pred cCHHHHHHHHHHHhcCCe-EEEEecChhH-HHHHHHHHHHhhCCCeEEEc-------CChHHH---HHHHHhCCCCCEEE
Confidence 457789999999999987 7777877532 23344444444566665431 111111 11223467889999
Q ss_pred EEc
Q 013746 283 VVG 285 (437)
Q Consensus 283 ~iG 285 (437)
++.
T Consensus 181 ~iS 183 (278)
T PRK11557 181 AIS 183 (278)
T ss_pred EEc
Confidence 884
No 355
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=51.48 E-value=2.7e+02 Score=28.13 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHhcCCC-EEEecCCCChHHHHHHHHhCC-CcEe--eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 15 DGNTLAAKSLSLFGAT-HMFGVVGIPVTSLANRAVQLG-VRFI--AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~-~vFg~pG~~~~~l~~al~~~~-i~~i--~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
...+.+.+.|++.|.+ .||=--|..=. -++.|.++| +.-| .+.+|.+-= ...| +..+||.
T Consensus 198 p~V~~~~~~Le~~G~Ev~VFHAtG~GG~-aME~Li~~G~~~~VlDlTttEl~d~-------l~GG-----v~sagp~--- 261 (403)
T PF06792_consen 198 PCVDAIRERLEEEGYEVLVFHATGTGGR-AMERLIREGQFDGVLDLTTTELADE-------LFGG-----VLSAGPD--- 261 (403)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchH-HHHHHHHcCCcEEEEECcHHHHHHH-------HhCC-----CCCCCch---
Confidence 4567777888888776 34433333212 222333333 5544 466665321 1112 2345664
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecC----CcCchHHHHHHHHHHhhcCCCcee
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK----DITEVPKCVAQVLERAVSGRPGGC 166 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~----~~~~~~~~l~~A~~~a~~~~~GPv 166 (437)
=+..|-..++|.++..|..+.-.+| +..++...---|.+-.++-.++ ++++..+.=+ -+..-.+..+|||
T Consensus 262 ---Rl~AA~~~GIP~Vvs~GalDmVnFg--~~~tvPe~~~~R~~~~HNp~vTlmRtt~eE~~~~g~-~ia~kLn~~~gpv 335 (403)
T PF06792_consen 262 ---RLEAAARAGIPQVVSPGALDMVNFG--PPDTVPEKFKGRKLYEHNPQVTLMRTTPEENRQLGE-FIAEKLNRAKGPV 335 (403)
T ss_pred ---HHHHHHHcCCCEEEecCccceeccC--CcccCCHhhcCCcceecCCceeEeeCCHHHHHHHHH-HHHHHHhcCCCCE
Confidence 2344666799999999987654443 2233211111133333333332 3444333222 2222223356999
Q ss_pred EEEcCcchhccc-cchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCcc
Q 013746 167 YLDLPTDVLHQT-ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232 (437)
Q Consensus 167 ~l~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~ 232 (437)
.+-||..=+... .+- .+-..|..+...++.+.+-|.....+++-.-..++..
T Consensus 336 ~v~lP~~G~S~~d~~G--------------~~f~Dpead~al~~~l~~~l~~~~i~v~~~~~hIND~ 388 (403)
T PF06792_consen 336 RVLLPLGGVSALDRPG--------------GPFYDPEADEALFDALRENLDGSGIEVIEVDAHINDP 388 (403)
T ss_pred EEEECCCCCcccCCCC--------------CcCcChhHHHHHHHHHHHhCCCCCcEEEECCCCCCCH
Confidence 999997632211 110 1122333444445555555555577888887777544
No 356
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=51.34 E-value=45 Score=33.09 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCc-CccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE-AKKPLIVFGKGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~-a~rPvil~G~g~-~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|... ...+..+.+.+..+..|+.+.. +. ++- .+|-.-.. .....+ .++|+|
T Consensus 13 ~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~-~~--~v~--~~p~~~~v~~~~~~~~~~~~D~I 87 (357)
T cd08181 13 CVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEI-FD--EVE--ENPSLETIMEAVEIAKKFNADFV 87 (357)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEE-eC--CCC--CCcCHHHHHHHHHHHHhcCCCEE
Confidence 34555555543 389999999876 4456678888888887876532 11 111 23332221 111222 368999
Q ss_pred EEEcCc
Q 013746 282 LVVGAR 287 (437)
Q Consensus 282 l~iG~~ 287 (437)
|.||.-
T Consensus 88 IavGGG 93 (357)
T cd08181 88 IGIGGG 93 (357)
T ss_pred EEeCCc
Confidence 999943
No 357
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.11 E-value=51 Score=32.00 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcc
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~ 267 (437)
...++++.|...++..+++|... +.....+..++++.++|+++.......+++..|+++
T Consensus 54 ~a~~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~f 112 (344)
T cd06348 54 EAINAFQTLINKDRVLAIIGPTL--SQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPYVF 112 (344)
T ss_pred HHHHHHHHHhhhcCceEEECCCC--cHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCeEE
Confidence 33444444545568899998653 344556778999999999986544333455555543
No 358
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=51.03 E-value=38 Score=32.35 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEE
Q 013746 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVA 281 (437)
Q Consensus 202 ~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlv 281 (437)
..+++.+++++++|.+|+|..++. .|.. .-....+..-..++|.++.... +.|-.. .....+.+-|++
T Consensus 114 ~l~~~~l~~av~~L~~A~rI~~~G-~g~S-~~vA~~~~~~l~~ig~~~~~~~-------d~~~~~---~~~~~~~~~Dv~ 181 (281)
T COG1737 114 LLDEEALERAVELLAKARRIYFFG-LGSS-GLVASDLAYKLMRIGLNVVALS-------DTHGQL---MQLALLTPGDVV 181 (281)
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEE-echh-HHHHHHHHHHHHHcCCceeEec-------chHHHH---HHHHhCCCCCEE
Confidence 357889999999999998866665 4442 2344556666667788877532 222111 123456788999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|+|..
T Consensus 182 i~iS~ 186 (281)
T COG1737 182 IAISF 186 (281)
T ss_pred EEEeC
Confidence 99954
No 359
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=50.75 E-value=44 Score=33.37 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=45.0
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|.+....+..+.+.+..+..|+.+.. +. + + +.+|-.--. ...+.+ .++|+|
T Consensus 13 ~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~-~~--~-v-~~~p~~~~v~~~~~~~~~~~~d~I 87 (374)
T cd08189 13 SLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAV-YD--G-V-PPDPTIENVEAGLALYRENGCDAI 87 (374)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEE-eC--C-C-CCCcCHHHHHHHHHHHHhcCCCEE
Confidence 45555555553 4799999998876555667788888887876542 11 1 1 123332111 111222 479999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 88 IaiGG 92 (374)
T cd08189 88 LAVGG 92 (374)
T ss_pred EEeCC
Confidence 99995
No 360
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=50.72 E-value=36 Score=34.18 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=44.5
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhch--hcCCEEEE
Q 013746 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAI--GQCDVALV 283 (437)
Q Consensus 207 ~~~~~~~~l~~-a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l--~~aDlvl~ 283 (437)
.++++.+.+++ .+|++|+.|.+....+..+.+.+..++.|+.+.. +. ++-|+ .|..--....... .++|+||.
T Consensus 10 ~l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-f~--~v~~~-~~~~~v~~~~~~~~~~~~D~IIa 85 (386)
T cd08191 10 QRRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEV-FD--GVLPD-LPRSELCDAASAAARAGPDVIIG 85 (386)
T ss_pred HHHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEE-EC--CCCCC-cCHHHHHHHHHHHHhcCCCEEEE
Confidence 34555555543 3889999988876557778888888888876542 21 22212 1222111111111 47999999
Q ss_pred EcC
Q 013746 284 VGA 286 (437)
Q Consensus 284 iG~ 286 (437)
||.
T Consensus 86 iGG 88 (386)
T cd08191 86 LGG 88 (386)
T ss_pred eCC
Confidence 995
No 361
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=50.55 E-value=52 Score=32.90 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCc-CccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE-AKKPLIVFGKGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~-a~rPvil~G~g~-~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|.+. ...+..+.+.+..++.|+.+.. +. ++- .+|-.--. .....+ .++|+|
T Consensus 13 ~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~-~~--~v~--~~p~~~~v~~~~~~~~~~~~D~I 87 (380)
T cd08185 13 KLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVV-FD--KVE--PNPTTTTVMEGAALAREEGCDFV 87 (380)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEE-eC--Ccc--CCCCHHHHHHHHHHHHHcCCCEE
Confidence 45566566653 389999999876 3567778888888888886642 11 111 13332211 111222 379999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 88 iavGG 92 (380)
T cd08185 88 VGLGG 92 (380)
T ss_pred EEeCC
Confidence 99995
No 362
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=50.21 E-value=30 Score=34.27 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=33.1
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC--CCCCCCCC
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDT 262 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~--gkg~~~~~ 262 (437)
|.+|+ .++-.|.|....+..+.+++||+.+|.-|-+|-. -.|.+|.+
T Consensus 234 L~~A~-vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~~ 282 (356)
T PLN00022 234 LGSAK-VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPND 282 (356)
T ss_pred cccCC-EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCChH
Confidence 44443 4555566666566789999999999999888754 34566654
No 363
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=50.19 E-value=41 Score=33.61 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCE
Q 013746 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDl 280 (437)
..++++.+.+.+ .+|++|+.|......+..+.+.+..+..|+.+.. +. ++-+ +|-.-.. ...+.+ .++|+
T Consensus 14 g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~--~v~~--~p~~~~v~~~~~~~~~~~~d~ 88 (377)
T cd08188 14 GALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVV-FS--DVSP--NPRDEEVMAGAELYLENGCDV 88 (377)
T ss_pred CHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-eC--CCCC--CCCHHHHHHHHHHHHhcCCCE
Confidence 345666666654 4899999998776556677888887887876542 11 1112 3322211 111222 47999
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
||.||.
T Consensus 89 IIaiGG 94 (377)
T cd08188 89 IIAVGG 94 (377)
T ss_pred EEEeCC
Confidence 999995
No 364
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=50.17 E-value=42 Score=32.48 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhch-hcCCEEEEEcCcCC
Q 013746 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAI-GQCDVALVVGARLN 289 (437)
Q Consensus 237 ~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l-~~aDlvl~iG~~~~ 289 (437)
....++|.+++||+||+.| .+.+. ...+.+ .+.|+||.||....
T Consensus 43 lA~~iaellNA~Vlttpwg--~ynes-------~~~eI~~lnpd~VLIIGGp~A 87 (337)
T COG2247 43 LALPIAELLNAPVLTTPWG--IYNES-------VLDEIIELNPDLVLIIGGPIA 87 (337)
T ss_pred HhhHHHHHhCCeeEecCcc--cccHH-------HHHHHHhhCCceEEEECCCCc
Confidence 3467999999999998844 22221 111223 47999999997653
No 365
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=50.00 E-value=18 Score=30.79 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=25.1
Q ss_pred hHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 392 GLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 392 ~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+..+|.|.+.+....-++..+..-|+.-...-|.+|...++|+++|
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i 91 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVI 91 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEE
Confidence 4555556555542222333333666666666666666666666543
No 366
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=49.97 E-value=1.3e+02 Score=26.35 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHH------hCCCcEeeccchHH-HHHHHHH------HHh---HhC
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAV------QLGVRFIAFHNEQS-AGYAASA------YGY---LTG 75 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~------~~~i~~i~~~~E~~-A~~~A~g------yar---~tg 75 (437)
...++.+++.|++-|=--+||+-|+... +|..+|. ++++.-|.-.-+.+ -..++-= |+| +.|
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g 107 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG 107 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC
Confidence 3578999999998888899999998654 5555552 34666665443332 2222222 233 567
Q ss_pred CcE---EEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCC
Q 013746 76 KPG---ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 76 ~~~---v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
++| +.+.|+| -..|.+.++-.|..-.+-+|.+||...
T Consensus 108 ~~GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~G 147 (176)
T COG0279 108 QPGDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDG 147 (176)
T ss_pred CCCCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 777 3445777 688999999999999999999999653
No 367
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=49.80 E-value=17 Score=28.83 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=24.0
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+...-+-+|+.|+. ...+.+.++|+..++||+.|+.
T Consensus 58 ~~~~i~~iIltg~~----~~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 58 IEAGIACIILTGGL----EPSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp CCTTECEEEEETT--------HHHHHHHHHHT-EEEE-SS
T ss_pred HHhCCCEEEEeCCC----CCCHHHHHHHHHCCCEEEEECC
Confidence 33334778888754 4568899999999999999875
No 368
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=49.49 E-value=43 Score=33.59 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=43.2
Q ss_pred HHHHHHHHHh-----CCCcEEEEcCCcCc-cchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcC
Q 013746 208 IDKAVSLLKE-----AKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQC 278 (437)
Q Consensus 208 ~~~~~~~l~~-----a~rPvil~G~g~~~-~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~a 278 (437)
++++-+.+++ .+|++|+.|..... .+..+.+.+..++.|+.+..- . +. +.+|-.-.. .....+ .++
T Consensus 11 ~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f-~--~v--~~~p~~~~v~~~~~~~~~~~~ 85 (383)
T cd08186 11 IEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLY-N--KV--TPNPTVDQVDEAAKLGREFGA 85 (383)
T ss_pred HHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEe-C--CC--CCCCCHHHHHHHHHHHHHcCC
Confidence 4455555543 48999999877543 455688888888888865421 1 11 122322111 111222 368
Q ss_pred CEEEEEcC
Q 013746 279 DVALVVGA 286 (437)
Q Consensus 279 Dlvl~iG~ 286 (437)
|+||.||.
T Consensus 86 D~IIaiGG 93 (383)
T cd08186 86 QAVIAIGG 93 (383)
T ss_pred CEEEEeCC
Confidence 99999995
No 369
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=48.37 E-value=10 Score=35.84 Aligned_cols=48 Identities=13% Similarity=-0.051 Sum_probs=31.4
Q ss_pred CCCCcchHHHHHHHhHhCC---------CCcEEEEEcCcccc--CCHHHHHHH-HHcCcc
Q 013746 386 WGTMGVGLGYCIAAAIACP---------ERLVVAVEGDSGFG--FSAVEVEVW-LSCIIM 433 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p---------~~~vv~i~GDG~f~--~~~~eL~Ta-~r~~l~ 433 (437)
-+.+|...|-|.|+++|.. +.-+|++.|||+|. =...|-.+. .=.++|
T Consensus 112 pS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp 171 (265)
T cd02016 112 PSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT 171 (265)
T ss_pred CcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCC
Confidence 3667888888888877752 34568899999983 344453333 334555
No 370
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=48.11 E-value=45 Score=33.22 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=45.9
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHH-HHhc--hhcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA-RSLA--IGQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~-~~~~--l~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|......+..+.+++..+..|+.+.. +.+ + +.||-.-... .... -.++|+|
T Consensus 11 ~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~-~~~---v-~~~p~~~~v~~~~~~~~~~~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAAL-FDE---V-PPNPTEAAVEAGLAAYRAGGCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHHHHHHHHHHhcCCCEE
Confidence 45566566654 4799999998876556677888877877776542 111 1 2334332211 1112 2478999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 86 IaiGG 90 (370)
T cd08192 86 IAFGG 90 (370)
T ss_pred EEeCC
Confidence 99995
No 371
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=47.64 E-value=52 Score=31.85 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC-cCccchHHHHHHHHHHhCCCeee---CCCC-CCCCCCCCCCcccHHHHhchhcCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKG-AAYARAEGELKKLVESTGIPFLP---TPMG-KGLLPDTHPLAATAARSLAIGQCD 279 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g-~~~~~~~~~l~~lae~~g~pv~t---t~~g-kg~~~~~hp~~~G~~~~~~l~~aD 279 (437)
++..+++.+.|..+...+|++|-| .-.++....+.++++..+++++. .|.. -| ...+++.-.....+.+.+|
T Consensus 72 ~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg---~~~~~nA~~~l~~L~~~~d 148 (304)
T cd02201 72 EESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEG---KKRMRQAEEGLEELRKHVD 148 (304)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccc---hhHHHHHHHHHHHHHHhCC
Confidence 344567777888888888888743 34467778899999999986543 2221 00 0111111112334557799
Q ss_pred EEEEEc
Q 013746 280 VALVVG 285 (437)
Q Consensus 280 lvl~iG 285 (437)
.++++-
T Consensus 149 ~~ivid 154 (304)
T cd02201 149 TLIVIP 154 (304)
T ss_pred EEEEEe
Confidence 999885
No 372
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=47.31 E-value=1.3e+02 Score=28.57 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCEEEecCCCChH--HHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGLAG 94 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~~g 94 (437)
+.+++.|.+..--++||+-++... .+...+.+-|+..... ++....... ...++ +--++++-|..| .-+.+..
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~~~~--~~~~~-~~Dl~I~iS~sG~t~~~~~~ 206 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAY-DDAHIMLMS--AALLQ-EGDVVLVVSHSGRTSDVIEA 206 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEc-CCHHHHHHH--HhcCC-CCCEEEEEeCCCCCHHHHHH
Confidence 556777777777788988665332 2223344457665544 333222212 22232 223444444555 3456777
Q ss_pred HHHhhhCCCcEEEEecCCCcc
Q 013746 95 LSNGMINTWPIVMISGSCDQK 115 (437)
Q Consensus 95 i~~A~~~~~Pvl~I~g~~~~~ 115 (437)
+..|...+.|+|.||+.....
T Consensus 207 ~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 207 VELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHCCCeEEEEeCCCCCh
Confidence 888999999999999877543
No 373
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=47.15 E-value=29 Score=34.27 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=41.9
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEE
Q 013746 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVAL 282 (437)
Q Consensus 207 ~~~~~~~~l~~-a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl 282 (437)
.++++.+.+++ .+|++|+.|.+... +..+.+.+..+..|+.+... . +.. +|-.--. ...+.+ .++|+||
T Consensus 10 ~~~~l~~~~~~~~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~~~--~---~~~-~p~~~~v~~~~~~~~~~~~D~II 82 (351)
T cd08170 10 ALDELGEYLARLGKRALIIADEFVLD-LVGAKIEESLAAAGIDARFE--V---FGG-ECTRAEIERLAEIARDNGADVVI 82 (351)
T ss_pred HHHHHHHHHHHhCCeEEEEECHHHHH-HHHHHHHHHHHhCCCeEEEE--E---eCC-cCCHHHHHHHHHHHhhcCCCEEE
Confidence 34455445543 58999999887754 56677777777777765311 1 111 1211000 111222 4789999
Q ss_pred EEcCc
Q 013746 283 VVGAR 287 (437)
Q Consensus 283 ~iG~~ 287 (437)
.||.-
T Consensus 83 avGGG 87 (351)
T cd08170 83 GIGGG 87 (351)
T ss_pred EecCc
Confidence 99943
No 374
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=46.48 E-value=65 Score=32.14 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCE
Q 013746 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDl 280 (437)
..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+.. +.+ + +.+|..-.. .....+ .++|+
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~-~~~---v-~~~p~~~~v~~~~~~~~~~~~D~ 83 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAI-FDD---V-VSEPTDESVEEGVKLAKEGGCDV 83 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEE-ECC---C-CCCcCHHHHHHHHHHHHhcCCCE
Confidence 345666666653 5899999998877555677888888888876542 111 1 122332111 111222 47999
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
||.||.
T Consensus 84 IIaiGG 89 (375)
T cd08194 84 IIALGG 89 (375)
T ss_pred EEEeCC
Confidence 999995
No 375
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=46.44 E-value=53 Score=29.86 Aligned_cols=54 Identities=17% Similarity=0.380 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCC-CcEEEEcCCcCccchHHHHHHHHHH-hCCCeeeCCCCCC
Q 013746 204 VNSDIDKAVSLLKEAK-KPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKG 257 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~-rPvil~G~g~~~~~~~~~l~~lae~-~g~pv~tt~~gkg 257 (437)
.|.++-++++++.+.+ ||-+++|--+.--++.+.=.+|.+. .++|.++...-||
T Consensus 136 APTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkG 191 (208)
T PRK08285 136 APTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGRRG 191 (208)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecCCC
Confidence 4567888889998765 9999999877544544443444442 4999999988887
No 376
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=46.28 E-value=15 Score=34.75 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHhchhcCCEEEEEcCcCCC
Q 013746 271 RSLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~ 290 (437)
+.+.+++||++|+||+++.-
T Consensus 198 a~~~~~~aDlllviGTSl~V 217 (260)
T cd01409 198 AAARLAEADALLVLGSSLMV 217 (260)
T ss_pred HHHHHhcCCEEEEeCcCcee
Confidence 45667899999999999864
No 377
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=45.90 E-value=56 Score=32.71 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=41.1
Q ss_pred HHHHHHHHHh-CCCcEEEEcCCcC-ccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhc--hhcCCEEE
Q 013746 208 IDKAVSLLKE-AKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLA--IGQCDVAL 282 (437)
Q Consensus 208 ~~~~~~~l~~-a~rPvil~G~g~~-~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~--l~~aDlvl 282 (437)
++++.+.+++ .+|++|+.|.... ..+..+.+++..+..|+-+.. +.+ + +.||-.--. ..... -.++|+||
T Consensus 17 ~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~-~~~--v--~~~p~~~~v~~~~~~~~~~~~D~II 91 (382)
T cd08187 17 ESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVE-LGG--V--EPNPRLETVREGIELCKEEKVDFIL 91 (382)
T ss_pred HHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEE-ECC--c--cCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4444444443 5899999986543 345567787777777775532 111 1 113322111 11122 24799999
Q ss_pred EEcC
Q 013746 283 VVGA 286 (437)
Q Consensus 283 ~iG~ 286 (437)
.||.
T Consensus 92 aiGG 95 (382)
T cd08187 92 AVGG 95 (382)
T ss_pred EeCC
Confidence 9995
No 378
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=45.59 E-value=19 Score=35.07 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC--C-CCCCCCCCCcccH
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--K-GLLPDTHPLAATA 269 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g--k-g~~~~~hp~~~G~ 269 (437)
|.+|+ .++-.|+|.......+.+++||+.+|.-|-+|-.. . |.+|.+ ..+|.
T Consensus 192 L~~A~-vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~~--~QIGq 246 (313)
T PRK03363 192 LDKAR-LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHE--RYVGI 246 (313)
T ss_pred cccCC-EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCHH--heecC
Confidence 44554 55556677766678899999999999999988552 2 477653 44553
No 379
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=45.51 E-value=52 Score=32.82 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=41.7
Q ss_pred HHHHHHHHHh-CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEEE
Q 013746 208 IDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVALV 283 (437)
Q Consensus 208 ~~~~~~~l~~-a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl~ 283 (437)
++++-+.+++ .+|++|+.|.... ..+.+.+..+..|+.+..- . ..+ +|-.--. .....+ .++|+||.
T Consensus 11 ~~~l~~~l~~~~~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~-~---~~~--~p~~~~v~~~~~~~~~~~~D~IIa 81 (374)
T cd08183 11 AKELPALAAELGRRVLLVTGASSL---RAAWLIEALRAAGIEVTHV-V---VAG--EPSVELVDAAVAEARNAGCDVVIA 81 (374)
T ss_pred HHHHHHHHHHcCCcEEEEECCchH---HHHHHHHHHHHcCCeEEEe-c---CCC--CcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455555554 5899999998764 5666777777778765431 1 112 3322111 111222 47999999
Q ss_pred EcCc
Q 013746 284 VGAR 287 (437)
Q Consensus 284 iG~~ 287 (437)
||.-
T Consensus 82 iGGG 85 (374)
T cd08183 82 IGGG 85 (374)
T ss_pred ecCc
Confidence 9954
No 380
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=44.98 E-value=2.7e+02 Score=30.07 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCCEEEecCC----CChHHHHHHHHhCCCcEeeccchHHHHHH----HHHHHhHhCCcEEEEEcCChhh
Q 013746 17 NTLAAKSLSLFGATHMFGVVG----IPVTSLANRAVQLGVRFIAFHNEQSAGYA----ASAYGYLTGKPGILLTVSGPGC 88 (437)
Q Consensus 17 ~~~i~~~L~~~Gv~~vFg~pG----~~~~~l~~al~~~~i~~i~~~~E~~A~~~----A~gyar~tg~~~v~~~t~GpG~ 88 (437)
-+-|++..++++|+.|. || +...+|.++..+.||+||...-|--...- |-..+-..|-| ++=.|-|| .
T Consensus 95 ideii~iak~~~vdavH--PGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVp-vVPGTpgP-i 170 (1176)
T KOG0369|consen 95 IDEIISIAKKHNVDAVH--PGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVP-VVPGTPGP-I 170 (1176)
T ss_pred HHHHHHHHHHcCCCeec--CCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCC-ccCCCCCC-c
Confidence 46788999999999884 55 55667888888889999998888654321 11222223433 44445555 3
Q ss_pred HhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhc
Q 013746 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 89 ~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 160 (437)
+..--++.-+...+.|+|+=++--. -|+| -..+.+.+++.+.++||...|..
T Consensus 171 tt~~EA~eF~k~yG~PvI~KAAyGG---GGRG-----------------mRvVr~~e~vee~f~Ra~SEA~a 222 (1176)
T KOG0369|consen 171 TTVEEALEFVKEYGLPVIIKAAYGG---GGRG-----------------MRVVRSGEDVEEAFQRAYSEALA 222 (1176)
T ss_pred ccHHHHHHHHHhcCCcEEEeecccC---CCcc-----------------eEEeechhhHHHHHHHHHHHHHH
Confidence 4455566667788999998774221 1111 23455678888899999887764
No 381
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=44.73 E-value=9.8 Score=35.12 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.7
Q ss_pred HHhchhcCCEEEEEcCcCCC
Q 013746 271 RSLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~ 290 (437)
....++++|++|+||+++.-
T Consensus 165 ~~~~~~~~DlllviGTSl~v 184 (225)
T cd01411 165 AIQAIEKADLLVIVGTSFVV 184 (225)
T ss_pred HHHHHhcCCEEEEECcCCee
Confidence 34567889999999998753
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=44.65 E-value=69 Score=32.75 Aligned_cols=47 Identities=28% Similarity=0.424 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 206 SDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 206 ~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
..+.+.+..+... .+.+.++.....++.+.+++..++++.|+||+..
T Consensus 115 TtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 115 TTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS 162 (433)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec
Confidence 3456666667665 5666666777788888999999999999999865
No 383
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.65 E-value=2.6e+02 Score=25.78 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=75.1
Q ss_pred CcHHHHHHHHHHhc--CCCEEEecCCCC-------hHHHHHHHHhCCCcEeecc----chHHHHHHHHHHHhHhCCcEEE
Q 013746 14 IDGNTLAAKSLSLF--GATHMFGVVGIP-------VTSLANRAVQLGVRFIAFH----NEQSAGYAASAYGYLTGKPGIL 80 (437)
Q Consensus 14 ~~~~~~i~~~L~~~--Gv~~vFg~pG~~-------~~~l~~al~~~~i~~i~~~----~E~~A~~~A~gyar~tg~~~v~ 80 (437)
..++...++.|.+. |-+.|.-+-|.. ...+.+.+++.+++++... +...+--.+..+-+....+-++
T Consensus 110 ~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 189 (274)
T cd06311 110 YGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILDRQYANWNRDDAFSVMQDLLTKFPKIDAV 189 (274)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEE
Confidence 35667777878776 666665444422 1233444555566654321 1111111111221122346677
Q ss_pred EEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhcc-Cc-cceeeecCCcCchHHHHHHHHHHh
Q 013746 81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK-PF-SKFAVKAKDITEVPKCVAQVLERA 158 (437)
Q Consensus 81 ~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~-~~-~k~~~~v~~~~~~~~~l~~A~~~a 158 (437)
++++..-+..++.++.++-... -+.+++++-... ..+..+ .- .-......+|......++.+.+.+
T Consensus 190 ~~~~d~~a~g~~~al~~~g~~~-~~~ivg~d~~~~-----------~~~~i~~g~~~~~~~v~~~~~~~~~~~~~~~~~~ 257 (274)
T cd06311 190 WAHDDDMAVGVLAAIKQAGRTD-IKFVVGGAGSKD-----------MIKMIMDGDPLIPADVLYPPSMIASAIDLTVALF 257 (274)
T ss_pred EECCCcHHHHHHHHHHHcCCCC-CceEEEeCCCHH-----------HHHHHHCCCCceeEEEecCHHHHHHHHHHHHHHH
Confidence 7777665566666666543321 244444332111 112221 10 001122344556677777777777
Q ss_pred hcCCCceeEEEcCcch
Q 013746 159 VSGRPGGCYLDLPTDV 174 (437)
Q Consensus 159 ~~~~~GPv~l~iP~dv 174 (437)
..+.++|.++.+|..+
T Consensus 258 ~g~~~~~~~~~v~~~~ 273 (274)
T cd06311 258 QGGMPGLGQFIIPARL 273 (274)
T ss_pred cCCCCCCcceecccee
Confidence 7778888888888654
No 384
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=44.31 E-value=28 Score=35.15 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH----HHHHhCC
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK----LVESTGI 247 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~----lae~~g~ 247 (437)
.+.+.+++++++|..+++++|+.|.+..+......+.. |...+|.
T Consensus 236 v~~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~ 284 (414)
T cd02772 236 EASEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGA 284 (414)
T ss_pred CCHHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCc
Confidence 34667899999999999999999999876544444443 4444553
No 385
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=43.74 E-value=36 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHHHh
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ 49 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~ 49 (437)
+...+.|++.|++.+|+ ||+....+.+.|++
T Consensus 98 ~~~~~~L~~~Gv~~vf~-pgt~~~~i~~~l~~ 128 (128)
T cd02072 98 EDVEKRFKEMGFDRVFA-PGTPPEEAIADLKK 128 (128)
T ss_pred HHHHHHHHHcCCCEEEC-cCCCHHHHHHHHhC
No 386
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.25 E-value=71 Score=30.88 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~ 267 (437)
+..-.++++.|.+.++..+++|.-. +.....+..++++.++|+++....-..+.+.+|+++
T Consensus 51 p~~a~~~a~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~f 111 (332)
T cd06344 51 PEIAKKVADELVKDPEILGVVGHYS--SDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFF 111 (332)
T ss_pred hHHHHHHHHHHhcccCceEEEcCCC--cHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEE
Confidence 3333445555655678889998643 455567788999999999976543333334556554
No 387
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=43.23 E-value=23 Score=38.07 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEcCCcCc--cchHHHHHHHHHHhCCCe-eeCCCCCCCCCCCCCCcccHHH----
Q 013746 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAY--ARAEGELKKLVESTGIPF-LPTPMGKGLLPDTHPLAATAAR---- 271 (437)
Q Consensus 205 ~~~~~~~~~~l~~------a~rPvil~G~g~~~--~~~~~~l~~lae~~g~pv-~tt~~gkg~~~~~hp~~~G~~~---- 271 (437)
+++++.+++.|++ .+...++.|.+... ......+.+|++.+|.++ .......+.....++..+|...
T Consensus 81 DeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (617)
T cd02770 81 DEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAAASGSS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecCCCCCC
Q ss_pred HhchhcCCEEEEEcCcCCCcccc--CCCCCC----CCCceEEEhH
Q 013746 272 SLAIGQCDVALVVGARLNWLLHF--GEPPKW----SKDVKFVLVD 310 (437)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~--~~~~~~----~~~~~~i~vd 310 (437)
..=+.+||+||.+|+........ .....+ .+++++|.||
T Consensus 161 ~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivID 205 (617)
T cd02770 161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVID 205 (617)
T ss_pred HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEEC
No 388
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=43.01 E-value=17 Score=38.97 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCC----CcEEEE--cCCcCc---cchHHHHHHHHHHhCCCeeeC-CCCCCCCCCCCCCcccHHH---
Q 013746 205 NSDIDKAVSLLKEAK----KPLIVF--GKGAAY---ARAEGELKKLVESTGIPFLPT-PMGKGLLPDTHPLAATAAR--- 271 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~----rPvil~--G~g~~~---~~~~~~l~~lae~~g~pv~tt-~~gkg~~~~~hp~~~G~~~--- 271 (437)
+++++.+++.|++.+ .-.|+. |.+... ......+.+|+..+|.++... ...-+..-..++..+|...
T Consensus 79 DEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 158 (609)
T cd02751 79 DEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSDEVYE 158 (609)
T ss_pred HHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccchhcc
Confidence 456777777776421 122322 222111 123456788888887644211 0000000011122233211
Q ss_pred ----Hhchh-cCCEEEEEcCcCCCccccCC-------CCCC----CCCceEEEhH
Q 013746 272 ----SLAIG-QCDVALVVGARLNWLLHFGE-------PPKW----SKDVKFVLVD 310 (437)
Q Consensus 272 ----~~~l~-~aDlvl~iG~~~~~~~~~~~-------~~~~----~~~~~~i~vd 310 (437)
..-+. +||+||.+|+.........+ ...+ .+++++|.||
T Consensus 159 ~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivID 213 (609)
T cd02751 159 QGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICID 213 (609)
T ss_pred CCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEEC
Confidence 12234 59999999998754332111 0011 2467899998
No 389
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=42.88 E-value=49 Score=29.01 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
-+.+.+++++++|.+++| ++++|.|.... ..+.+...-.++|.++..-.. . . ...+.+-|++|
T Consensus 18 l~~~~l~~~~~~i~~a~~-I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~~-------~--~------~~~~~~~D~vI 80 (179)
T cd05005 18 IDEEELDKLISAILNAKR-IFVYGAGRSGL-VAKAFAMRLMHLGLNVYVVGE-------T--T------TPAIGPGDLLI 80 (179)
T ss_pred cCHHHHHHHHHHHHhCCe-EEEEecChhHH-HHHHHHHHHHhCCCeEEEeCC-------C--C------CCCCCCCCEEE
Confidence 367789999999999966 78888876432 223333333455777765311 0 0 12345678887
Q ss_pred EEc
Q 013746 283 VVG 285 (437)
Q Consensus 283 ~iG 285 (437)
++.
T Consensus 81 ~iS 83 (179)
T cd05005 81 AIS 83 (179)
T ss_pred EEc
Confidence 774
No 390
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=42.83 E-value=50 Score=31.23 Aligned_cols=52 Identities=21% Similarity=0.104 Sum_probs=36.0
Q ss_pred CCHHHHHHH-HHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 203 IVNSDIDKA-VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 203 ~~~~~~~~~-~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+++....++ ++.+.+.+.=+|++|...........=-.+||.||+|.+|.-.
T Consensus 94 ~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 94 ADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 444444444 3344444555999999988666666678899999999998543
No 391
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=42.66 E-value=19 Score=32.70 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHhchhcCCEEEEEcCcCCCc
Q 013746 271 RSLAIGQCDVALVVGARLNWL 291 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~ 291 (437)
+.+.+++||++|+||+++.-.
T Consensus 149 a~~~~~~aDlllviGTSl~V~ 169 (206)
T cd01410 149 AAAAACRADLFLCLGTSLQVT 169 (206)
T ss_pred HHHHHhcCCEEEEECcCceeh
Confidence 345678999999999998643
No 392
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.65 E-value=61 Score=30.76 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCC-------cCc---cchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHh
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKG-------AAY---ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSL 273 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g-------~~~---~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~ 273 (437)
+.+.+.+.++.|+++.-+++..|.- ..+ ....+.+++.++++|+|++|++...- +. ..
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~-----~~-------~~ 106 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTR-----DV-------EE 106 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChh-----hH-------HH
Confidence 4667788889999988888888822 111 23457789999999999999976422 11 11
Q ss_pred chhcCCEEEEEcCcCC
Q 013746 274 AIGQCDVALVVGARLN 289 (437)
Q Consensus 274 ~l~~aDlvl~iG~~~~ 289 (437)
+.+-+| ++.||++..
T Consensus 107 l~~~vd-~~kIga~~~ 121 (266)
T PRK13398 107 VADYAD-MLQIGSRNM 121 (266)
T ss_pred HHHhCC-EEEECcccc
Confidence 112255 888988764
No 393
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=41.90 E-value=1e+02 Score=25.78 Aligned_cols=43 Identities=16% Similarity=-0.085 Sum_probs=19.9
Q ss_pred hHHHHHHHhHhCCCCcEEEEE-cCccccCCHHHHHHHHHcCccccc
Q 013746 392 GLGYCIAAAIACPERLVVAVE-GDSGFGFSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 392 ~lpaAiGaala~p~~~vv~i~-GDG~f~~~~~eL~Ta~r~~l~i~~ 436 (437)
+..+|.|++.+.. +.++..+ |.|. .....-|.++...++|++.
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~ 90 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVF 90 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEE
Confidence 4445555554432 3333333 4433 2333445555555565554
No 394
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=41.81 E-value=43 Score=32.98 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
++++.+.+...+|++|+.|..... ...+.+.+..++.|+.+
T Consensus 10 l~~l~~~l~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~ 50 (344)
T TIGR01357 10 LDQLVEELAEPSKLVIITDETVAD-LYADKLLEALQALGYNV 50 (344)
T ss_pred HHHHHHHhhcCCeEEEEECCchHH-HHHHHHHHHHHhcCCce
Confidence 444555565568999999887753 35677777777777765
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.76 E-value=79 Score=32.26 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
..+.+.+..+.+..+-+.++.....+..+.++++.++++.++|++...
T Consensus 115 TtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 115 TTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSY 162 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeec
Confidence 356677777776655666666677778899999999999999998543
No 396
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=41.75 E-value=18 Score=36.00 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhchh--cCCEEEEE
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAIG--QCDVALVV 284 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l~--~aDlvl~i 284 (437)
++++.+.+++-+|++||.|......+..+.+.+..++.++.+..-.. + ..+|-+-.. ...+.++ ++|+||.|
T Consensus 11 l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~----~-~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (366)
T PF00465_consen 11 LEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDG----V-GPNPTLEDVDEAAEQARKFGADCIIAI 85 (366)
T ss_dssp GGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEE----E-SSS-BHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEec----C-CCCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 45566666665699999998554445677888777888887743211 0 223333222 1222333 79999999
Q ss_pred cCc
Q 013746 285 GAR 287 (437)
Q Consensus 285 G~~ 287 (437)
|..
T Consensus 86 GGG 88 (366)
T PF00465_consen 86 GGG 88 (366)
T ss_dssp ESH
T ss_pred CCC
Confidence 943
No 397
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=41.69 E-value=88 Score=31.07 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH--HHHhc-hhcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLA-IGQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~--~~~~~-l~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+.. +.+ -+.||-.-.. ....+ -.++|+|
T Consensus 10 ~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~----~~~~p~~~~v~~~~~~~~~~~~d~I 84 (370)
T cd08551 10 AIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVI-FDG----VEPNPTLSNVDAAVAAYREEGCDGV 84 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-ECC----CCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 45666666664 5899999998776556677788877777775532 111 1223433221 11111 1368999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 85 iaiGG 89 (370)
T cd08551 85 IAVGG 89 (370)
T ss_pred EEeCC
Confidence 99995
No 398
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=41.54 E-value=1.8e+02 Score=25.18 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=46.9
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
++...+...+-..+.|+++||++-.++-+.+=.+ -+..+. .. ++..| .-|+++ +-|
T Consensus 6 GS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~------------------~~--a~~~g-~~viIa--~AG 62 (156)
T TIGR01162 6 GSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYA------------------KE--AEERG-IKVIIA--GAG 62 (156)
T ss_pred CcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHH------------------HH--HHHCC-CeEEEE--eCC
Confidence 3445667788899999999999988887754321 111111 00 11112 334444 345
Q ss_pred hHhhHHHHHHhhhCCCcEEEEec
Q 013746 88 CVHGLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g 110 (437)
..+.++|+..++. ..|||-+.-
T Consensus 63 ~aa~Lpgvva~~t-~~PVIgvP~ 84 (156)
T TIGR01162 63 GAAHLPGMVAALT-PLPVIGVPV 84 (156)
T ss_pred ccchhHHHHHhcc-CCCEEEecC
Confidence 5777788776665 678876654
No 399
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.26 E-value=70 Score=24.95 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEE
Q 013746 222 LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (437)
Q Consensus 222 vil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (437)
++++|+.- .-...+++++++.|.-...- |+--=.+.....+ ...+.++|+||++
T Consensus 2 vliVGG~~---~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l----~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 2 VLIVGGRE---DRERRYKRILEKYGGKLIHH--GRDGGDEKKASRL----PSKIKKADLVIVF 55 (97)
T ss_pred EEEEcCCc---ccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHH----HHhcCCCCEEEEE
No 400
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.22 E-value=86 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+..+.+..+.|.+++=--+.+..+-....-.+++.++|++++.|++.-+.
T Consensus 58 ~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 58 EEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 44577778888877766666665544446779999999999999997544
No 401
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=41.02 E-value=1.1e+02 Score=26.58 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEcCCcCc-cchHHHHHHHHHHhCCCeeeCCCCCCCCCCC
Q 013746 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPMGKGLLPDT 262 (437)
Q Consensus 201 ~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~-~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~ 262 (437)
|...++.+.++.+...+-.|.-+++=.|... ..-.+++++|-|.+|+||+.-.| -|.+|+-
T Consensus 122 PlVGEE~laEAVkAV~rLpRv~iLVLAGslMGGkIteaVk~lr~~hgI~VISL~M-~GSVpdV 183 (218)
T COG1707 122 PLVGEEELAEAVKAVARLPRVGILVLAGSLMGGKITEAVKELREEHGIPVISLNM-FGSVPDV 183 (218)
T ss_pred cccChHHHHHHHHHHhccccceeEEEecccccchHHHHHHHHHHhcCCeEEEecc-CCCCcch
Confidence 3345667777777776666655544333322 34568899999999999996544 3566663
No 402
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=40.85 E-value=66 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCC
Q 013746 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLN 289 (437)
Q Consensus 233 ~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~ 289 (437)
-+.+.|++-++++|+.+.....|...+.... ..+-++++|+||.+|..-.
T Consensus 15 lAae~L~~aA~~~G~~i~VE~qg~~g~~~~l-------t~~~i~~Ad~viia~d~~~ 64 (85)
T TIGR00829 15 MAAEALEKAAKKRGWEVKVETQGSVGAQNAL-------TAEDIAAADGVILAADREI 64 (85)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCccCCC-------CHHHHHhCCEEEEeccCCC
Confidence 3568899999999999887777644332211 1355789999999997643
No 403
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=40.69 E-value=46 Score=32.83 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHHHHH--hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH--HHHhchhcCCEEEE
Q 013746 208 IDKAVSLLK--EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAIGQCDVALV 283 (437)
Q Consensus 208 ~~~~~~~l~--~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~--~~~~~l~~aDlvl~ 283 (437)
++++.+.+. ..+|++|+.|....... .+.+.+..++.|+.+..... .-++.+|-.-.. ....+.+++|+||.
T Consensus 11 l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~---~~~~~~pt~~~v~~~~~~~~~~~d~IIa 86 (348)
T cd08175 11 LERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVL---PAGDLIADEKAVGRVLKELERDTDLIIA 86 (348)
T ss_pred HHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeec---CCCcccCCHHHHHHHHHHhhccCCEEEE
Confidence 444445554 34789999987765433 57788888888885532111 112223433221 11122237999999
Q ss_pred EcC
Q 013746 284 VGA 286 (437)
Q Consensus 284 iG~ 286 (437)
||.
T Consensus 87 IGG 89 (348)
T cd08175 87 VGS 89 (348)
T ss_pred ECC
Confidence 995
No 404
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=40.53 E-value=1.7e+02 Score=27.52 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC---C-----CcEeeccchH-----------HHH-HHHHHHHhHh
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL---G-----VRFIAFHNEQ-----------SAG-YAASAYGYLT 74 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~---~-----i~~i~~~~E~-----------~A~-~~A~gyar~t 74 (437)
...+.+++.|++.|-=++||.-++......|+.+.. | +..+..-.+. ... ++.+=.+..-
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 456889999999888888888777777777765421 2 2233222221 111 1111111111
Q ss_pred CCcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCcc
Q 013746 75 GKPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQK 115 (437)
Q Consensus 75 g~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~~ 115 (437)
++--+++..|..| .-..+.++..|...+.|++.||+.+...
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2222445555555 4455667888999999999999877544
No 405
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=40.48 E-value=50 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCC--CChHHHHHHHHhCCCcEeeccch
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVG--IPVTSLANRAVQLGVRFIAFHNE 60 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG--~~~~~l~~al~~~~i~~i~~~~E 60 (437)
..-.+.|++..++.|++.+|+=-| +.+..|.+.+.+.|++|+...-|
T Consensus 60 yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~ 108 (110)
T PF00289_consen 60 YLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPE 108 (110)
T ss_dssp TTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HH
T ss_pred hccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChH
Confidence 355789999999999999997666 44556777777889999976644
No 406
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=40.45 E-value=48 Score=34.11 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
.+.+++++++|.++++++|+.|.+.........+..|+..+|..
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999885445667777788877664
No 407
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=40.38 E-value=19 Score=31.78 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCCCCCCcccHHHHhchhcCCEEEEEcCcCC
Q 013746 259 LPDTHPLAATAARSLAIGQCDVALVVGARLN 289 (437)
Q Consensus 259 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~ 289 (437)
|.|.+|..+. .+...+++||++|+||+++.
T Consensus 146 fgE~~~~~~~-~~~~~~~~~Dl~lviGTSl~ 175 (178)
T PF02146_consen 146 FGESLPEEIE-EAIEDAEEADLLLVIGTSLQ 175 (178)
T ss_dssp BTSB-SHHHH-HHHHHHHH-SEEEEESS-ST
T ss_pred cCCCCHHHHH-HHHHHHHcCCEEEEEccCcE
Confidence 4455551111 23346789999999999875
No 408
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=40.07 E-value=15 Score=37.79 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCC--CCCc---ccHHHHhc
Q 013746 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT--HPLA---ATAARSLA 274 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~-----rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~--hp~~---~G~~~~~~ 274 (437)
+++++.+++.|++.+ +-+++.|+... ....+.+|+..+|.+-+.+...-..-+.. .... .+.....-
T Consensus 77 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~d 153 (454)
T cd02755 77 DEALQYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPD 153 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhccCCCCCcc
Confidence 345666666665432 22333333221 23467889988888743221110000000 0000 00011223
Q ss_pred hhcCCEEEEEcCcCCCccccCCCCCC----CCCceEEEhH
Q 013746 275 IGQCDVALVVGARLNWLLHFGEPPKW----SKDVKFVLVD 310 (437)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~~~~~~~----~~~~~~i~vd 310 (437)
+.+||+||.+|+...+.........+ .++.++|.||
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivId 193 (454)
T cd02755 154 FENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVD 193 (454)
T ss_pred hhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEEC
Confidence 67899999999987543211011111 2457999998
No 409
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=40.07 E-value=69 Score=31.01 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
+++...+..+.+-+-+-|.|++-.+. ...+.+.++|++.++|++.|...
T Consensus 67 ~~e~~~~~~~~~~~~~~P~iIvt~~~---~~p~~l~~~a~~~~ip~l~t~~~ 115 (304)
T TIGR00679 67 PEEEQKQIIHNLLTLNPPAIILSKSF---TDPTVLLQVNETYQVPILKTDLF 115 (304)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEeCCc
Confidence 34455666677778899999998876 45589999999999999998763
No 410
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=40.00 E-value=70 Score=30.54 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
.+.+.+++++++|.+|+| +.+.|.|.... ....+.....++|.++.. +++.|-. ......+.+-|++|
T Consensus 125 l~~~~l~~~~~~i~~A~~-I~i~G~G~S~~-~A~~l~~~l~~~g~~~~~-------~~d~~~~---~~~~~~~~~~Dl~I 192 (292)
T PRK11337 125 LDVDEFHRAARFFYQARQ-RDLYGAGGSAA-IARDVQHKFLRIGVRCQA-------YDDAHIM---LMSAALLQEGDVVL 192 (292)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEecHHHH-HHHHHHHHHhhCCCeEEE-------cCCHHHH---HHHHhcCCCCCEEE
Confidence 456789999999999988 56778775322 223332222345666643 1221111 11223466788888
Q ss_pred EEc
Q 013746 283 VVG 285 (437)
Q Consensus 283 ~iG 285 (437)
++-
T Consensus 193 ~iS 195 (292)
T PRK11337 193 VVS 195 (292)
T ss_pred EEe
Confidence 874
No 411
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=39.88 E-value=13 Score=36.61 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.6
Q ss_pred HHhchhcCCEEEEEcCcCCCc
Q 013746 271 RSLAIGQCDVALVVGARLNWL 291 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~ 291 (437)
....+++||++|+||+++.-.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~ 219 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVH 219 (349)
T ss_pred HHHHHHhCCEEEEECcCCccc
Confidence 345678999999999998643
No 412
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=39.39 E-value=32 Score=33.36 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=36.3
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC--CCCCCCCCCCCcccH
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDTHPLAATA 269 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~--gkg~~~~~hp~~~G~ 269 (437)
|.+|+ -++=.|.|.......+.+.+||+.+|+-|-+|.. -.|.+|.++ .+|.
T Consensus 192 L~~A~-iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGq 245 (313)
T COG2025 192 LAEAK-IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQ 245 (313)
T ss_pred cccce-EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecC
Confidence 33443 3555666776667778899999999999988754 267787765 4553
No 413
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=39.17 E-value=2e+02 Score=28.57 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcCcc--chHHHHHHHHHHhCCCeeeCCC-CCCCCC
Q 013746 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA--RAEGELKKLVESTGIPFLPTPM-GKGLLP 260 (437)
Q Consensus 202 ~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~--~~~~~l~~lae~~g~pv~tt~~-gkg~~~ 260 (437)
..+.+.++.+ ++...-+-+++.|-|.-.. ...+.++++++ -|+||+-+.. ..|.++
T Consensus 240 G~~~~~i~~a--~~~~g~~GiVie~~G~G~~~~~~~~~i~~~~~-~gi~VV~sSr~~~G~v~ 298 (351)
T COG0252 240 GLSSSLIDSA--LLSSGAKGLVLEGTGSGNVTPALIESIERASK-RGIPVVYSSRCLSGRVN 298 (351)
T ss_pred CCCHHHHHHH--HHhcCCCEEEEEEECCCCCChHHHHHHHHHHH-CCCeEEEEeccCCCccc
Confidence 3444444433 2567779999998887532 23344444444 4799886655 344443
No 414
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.04 E-value=57 Score=32.77 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCcc----chHHHHHHHHHHhC
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYA----RAEGELKKLVESTG 246 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~----~~~~~l~~lae~~g 246 (437)
.+.+.+++++++|.++++++|+.|.|.... .....+..++..++
T Consensus 220 v~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 220 IPAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred cCHHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 456789999999999999999999988632 33456666777665
No 415
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=38.96 E-value=86 Score=28.43 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 204 VNSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
.|.++-++++++++. -||-+++|--+.--++. +-++...+.++|.++...-||
T Consensus 130 APTAL~~l~eli~~g~~~PalVIg~PVGFV~A~-ESKe~L~~~~iP~It~~GrkG 183 (203)
T PRK05954 130 APTALLALCQQIRAGRVKPSLVIGVPVGFVSVV-EAKQALAQLDVPQIRVEGRKG 183 (203)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEECCcccCHH-HHHHHHHhCCCCEEEEecCCC
Confidence 355678888898865 58999999777544443 344444668999999988887
No 416
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=38.92 E-value=1.3e+02 Score=27.56 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCC
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIP 39 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~ 39 (437)
+...+..+.+.-++.|++.||.+-|-.
T Consensus 101 qyel~~~~Ld~a~e~g~~~IyTLGGy~ 127 (258)
T COG2047 101 QYELTGKILDIAKEFGARMIYTLGGYG 127 (258)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 456788899999999999999998843
No 417
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=38.86 E-value=45 Score=26.12 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=38.6
Q ss_pred CCcEEEEcCCcCccc-hHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEc
Q 013746 219 KKPLIVFGKGAAYAR-AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (437)
Q Consensus 219 ~rPvil~G~g~~~~~-~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (437)
.|.+..+|.|...|- ....++++++.+|+|+-......+.++. ....+|+++..-
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~------------~~~~aDiiv~s~ 57 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA------------LTDGADIIVTST 57 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc------------CCCcccEEEEeh
Confidence 467889999997664 4577999999999996655554443332 234678877664
No 418
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=38.75 E-value=2.4e+02 Score=23.70 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeecc--chHHHHHHHHHHHhHhCCcEEEEEcCC-hh-hH
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFH--NEQSAGYAASAYGYLTGKPGILLTVSG-PG-CV 89 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~--~E~~A~~~A~gyar~tg~~~v~~~t~G-pG-~~ 89 (437)
.+--+.+++.|++.|++.|+-+-+. .++...+.+.+++++... +...+..+..|.....+.-.++++.+- |- ..
T Consensus 24 ~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~ 101 (160)
T PF12804_consen 24 KPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSP 101 (160)
T ss_dssp EEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-H
T ss_pred ccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccCH
Confidence 4667899999999999999988777 345554555678887765 344444445555554233344444333 33 34
Q ss_pred hhHHHHHHhhh-CCCcEEEEe
Q 013746 90 HGLAGLSNGMI-NTWPIVMIS 109 (437)
Q Consensus 90 n~~~gi~~A~~-~~~Pvl~I~ 109 (437)
+.+..+.+++. +..++++.+
T Consensus 102 ~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 102 ELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp HHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHHhccCCcEEEEE
Confidence 55666666655 344555444
No 419
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=38.59 E-value=34 Score=29.62 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=11.5
Q ss_pred cEEEEEcCccccCCHHHHHHHH-HcCcccc
Q 013746 407 LVVAVEGDSGFGFSAVEVEVWL-SCIIMIS 435 (437)
Q Consensus 407 ~vv~i~GDG~f~~~~~eL~Ta~-r~~l~i~ 435 (437)
.++++.+=| +.-.++-|.++. ++++|++
T Consensus 60 ~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl 88 (157)
T TIGR03845 60 PAILMQSSG-LGNSINALASLNKTYGIPLP 88 (157)
T ss_pred cEEEEeCCc-HHHHHHHHHHHHHcCCCCEE
Confidence 444443333 333334444444 4444443
No 420
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=38.44 E-value=57 Score=35.30 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH------hCCCcEEEEcCCcCccchHHHHHHHHHH-hCCCeeeCCCCCCCCCCCCCCc------ccHHH
Q 013746 205 NSDIDKAVSLLK------EAKKPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKGLLPDTHPLA------ATAAR 271 (437)
Q Consensus 205 ~~~~~~~~~~l~------~a~rPvil~G~g~~~~~~~~~l~~lae~-~g~pv~tt~~gkg~~~~~hp~~------~G~~~ 271 (437)
+++++.+++.|+ ..++..++.|.+... .....+.+|++. +|.+-+.+...-+..+....+. .....
T Consensus 71 deAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 149 (671)
T TIGR01591 71 DEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTN-EENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIGAMSNT 149 (671)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc-HHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCCCCCCC
Q ss_pred HhchhcCCEEEEEcCcC
Q 013746 272 SLAIGQCDVALVVGARL 288 (437)
Q Consensus 272 ~~~l~~aDlvl~iG~~~ 288 (437)
..-+++||+||.+|+..
T Consensus 150 ~~di~~ad~il~~G~n~ 166 (671)
T TIGR01591 150 ISEIENADLIVIIGYNP 166 (671)
T ss_pred HHHHHhCCEEEEECCCh
No 421
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=38.38 E-value=1.6e+02 Score=25.47 Aligned_cols=91 Identities=11% Similarity=-0.027 Sum_probs=43.0
Q ss_pred HHHHHHHhccCCCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCc-cccC
Q 013746 341 RIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS-GFGF 419 (437)
Q Consensus 341 ~~i~~~l~~~~~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG-~f~~ 419 (437)
+.|.+.|++. .=+.++-.-|....++...+ ......+++.... =+.+.-+|-|.+.+. +|+.++++-=| |+.-
T Consensus 5 ~~l~~~L~~~-Gv~~vfgvpG~~~~~l~~al-~~~~~i~~i~~~~---E~~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n 78 (172)
T PF02776_consen 5 EALAEALKAN-GVTHVFGVPGSGNLPLLDAL-EKSPGIRFIPVRH---EQGAAFMADGYARAT-GRPGVVIVTSGPGATN 78 (172)
T ss_dssp HHHHHHHHHT-T-SEEEEE--GGGHHHHHHH-HHTTTSEEEE-SS---HHHHHHHHHHHHHHH-SSEEEEEEETTHHHHT
T ss_pred HHHHHHHHHC-CCeEEEEEeChhHhHHHHHh-hhhcceeeecccC---cchhHHHHHHHHHhh-ccceEEEeecccchHH
Confidence 3444444433 33344433344434443433 3222234443322 123555666665554 45665555443 5666
Q ss_pred CHHHHHHHHHcCcccccC
Q 013746 420 SAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 420 ~~~eL~Ta~r~~l~i~~i 437 (437)
...-|.+|...++|++.|
T Consensus 79 ~~~~l~~A~~~~~Pvl~i 96 (172)
T PF02776_consen 79 ALTGLANAYADRIPVLVI 96 (172)
T ss_dssp THHHHHHHHHTT-EEEEE
T ss_pred HHHHHhhcccceeeEEEE
Confidence 667777777777777653
No 422
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.32 E-value=97 Score=32.08 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=47.9
Q ss_pred CCCCEEEeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccc----------cCCH
Q 013746 352 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF----------GFSA 421 (437)
Q Consensus 352 ~~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f----------~~~~ 421 (437)
....++|+.|.. + ..-.|.+|+++.+.|-||+++.-+.- ..+..|.++.|-.++ .-|.
T Consensus 255 ~gkkvLITaGpT-----~---E~IDpVR~ItN~SSGkmG~alA~aa~----~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta 322 (475)
T PRK13982 255 AGRRVLITAGPT-----H---EPIDPVRYIANRSSGKQGFAIAAAAA----AAGAEVTLISGPVDLADPQGVKVIHVESA 322 (475)
T ss_pred CCCEEEEecCCc-----c---ccCCcceeeCCCCchHHHHHHHHHHH----HCCCcEEEEeCCcCCCCCCCceEEEecCH
Confidence 455678877664 1 23368899999999999987766544 346789999997765 2345
Q ss_pred HHHHHHHHcCc
Q 013746 422 VEVEVWLSCII 432 (437)
Q Consensus 422 ~eL~Ta~r~~l 432 (437)
+|+..+++..+
T Consensus 323 ~eM~~av~~~~ 333 (475)
T PRK13982 323 RQMLAAVEAAL 333 (475)
T ss_pred HHHHHHHHhhC
Confidence 77777776544
No 423
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=38.01 E-value=45 Score=36.33 Aligned_cols=38 Identities=34% Similarity=0.509 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccch----HHHHHHHHHHhC
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARA----EGELKKLVESTG 246 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~----~~~l~~lae~~g 246 (437)
.+++++|.+|++|+|++|.|+..+.. ...+..|+..+|
T Consensus 428 ~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G 469 (687)
T PRK09130 428 HEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVG 469 (687)
T ss_pred HHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhC
Confidence 56889999999999999999865432 344566777776
No 424
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=37.91 E-value=26 Score=38.66 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCC---CCCCCcccHHHHhchh
Q 013746 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP---DTHPLAATAARSLAIG 276 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~-----rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~---~~hp~~~G~~~~~~l~ 276 (437)
+++++.+++.|++.+ .=+.+.+... .....+.+|+..+|.|-+.+. +.-... ..+...+|.....=++
T Consensus 120 dEAl~~ia~~l~~i~~~~G~~~i~~~~~~~---~~~~~~~~~~~~~Gs~n~~~~-~~~c~~~~~~~~~~~~G~~~~~D~~ 195 (759)
T PRK15488 120 DEAYQEIAAKLNAIKQQHGPESVAFSSKSG---SLSSHLFHLATAFGSPNTFTH-ASTCPAGYAIAAKVMFGGKLKRDLA 195 (759)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeecCCC---cHHHHHHHHHHHcCCCCCCCc-cccccchhhhhHHhhcCCCccCCHh
Confidence 456777777765421 1233322111 123356788888887733211 110000 0011122311123367
Q ss_pred cCCEEEEEcCcCCCccccCCCC----CC-CCCceEEEhH
Q 013746 277 QCDVALVVGARLNWLLHFGEPP----KW-SKDVKFVLVD 310 (437)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~~~~~----~~-~~~~~~i~vd 310 (437)
+||+||.+|+.........+.. .. .+++++|.||
T Consensus 196 ~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivID 234 (759)
T PRK15488 196 NSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFE 234 (759)
T ss_pred hCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEEC
Confidence 8999999998864321111111 11 2467999998
No 425
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.86 E-value=49 Score=26.51 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
+|.++++|.|...+-..+.+++.+++.|+++-..
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~ 37 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEE
Confidence 4789999999977666778888889999987543
No 426
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=37.65 E-value=4.8e+02 Score=26.97 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=83.8
Q ss_pred HHHhCCCcEeeccchHHHHHHHHHHHhHhC-CcEEEEEc---CChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCC
Q 013746 46 RAVQLGVRFIAFHNEQSAGYAASAYGYLTG-KPGILLTV---SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121 (437)
Q Consensus 46 al~~~~i~~i~~~~E~~A~~~A~gyar~tg-~~~v~~~t---~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~ 121 (437)
.|...|.++..+.+=..| ...+.. .+.+|++- .|-.-..++.-+..-. ..+|||+|||..+....-
T Consensus 23 ~L~~~G~~v~~a~~~~~a------l~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~~AV--- 92 (464)
T COG2204 23 ALELAGYEVVTAESAEEA------LEALSESPFDLVLLDIRMPGMDGLELLKEIKSRD-PDLPVIVMTGHGDIDTAV--- 92 (464)
T ss_pred HHHHcCCeEEEeCCHHHH------HHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhC-CCCCEEEEeCCCCHHHHH---
Confidence 345567777777664433 233222 36677662 2222344555555544 789999999876543210
Q ss_pred CCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCC
Q 013746 122 FQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201 (437)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
+ ++-....-|-...-+++++...+++|++.....+...- ..+. ...... . -.-.
T Consensus 93 -~-----A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~--~~~~----~~~~~~---~-----------liG~ 146 (464)
T COG2204 93 -E-----ALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRR--SLKR----AKSLGG---E-----------LVGE 146 (464)
T ss_pred -H-----HHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhh--hhhc----cccccC---C-----------ceec
Confidence 0 11111111222233678888888888886443211100 1110 000000 0 0001
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHH-----HHHHHHHhCCCeee
Q 013746 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE-----LKKLVESTGIPFLP 251 (437)
Q Consensus 202 ~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~-----l~~lae~~g~pv~t 251 (437)
.+.-..+.+.++.+..+.-||++.|.- +..++ |-++..+.+-|++.
T Consensus 147 S~am~~l~~~i~kvA~s~a~VLI~GES----GtGKElvAr~IH~~S~R~~~PFVa 197 (464)
T COG2204 147 SPAMQQLRRLIAKVAPSDASVLITGES----GTGKELVARAIHQASPRAKGPFIA 197 (464)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC----CCcHHHHHHHHHhhCcccCCCcee
Confidence 112334666777788899999999975 33333 34445555557775
No 427
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=37.58 E-value=1.8e+02 Score=28.25 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHHHHHhc-CCCEEEecCCCChHHHH--HHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 013746 18 TLAAKSLSLF-GATHMFGVVGIPVTSLA--NRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG 94 (437)
Q Consensus 18 ~~i~~~L~~~-Gv~~vFg~pG~~~~~l~--~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~g 94 (437)
+.+++.|.+. +-=++||.-.+.....+ ..+..-|...+...+.... +. .....+.+-.+++.+...-..+.+..
T Consensus 37 ~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~-~~--~~~~~~~~d~~I~iS~sG~t~~~~~~ 113 (326)
T PRK10892 37 TLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAA-HG--DLGMVTPQDVVIAISNSGESSEILAL 113 (326)
T ss_pred HHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhh-cc--ccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 3456666554 45577777544433222 2233457766654322111 11 11233333333333333356778889
Q ss_pred HHHhhhCCCcEEEEecCCCccC
Q 013746 95 LSNGMINTWPIVMISGSCDQKD 116 (437)
Q Consensus 95 i~~A~~~~~Pvl~I~g~~~~~~ 116 (437)
+..|...++|++.||+......
T Consensus 114 ~~~ak~~g~~vi~iT~~~~s~l 135 (326)
T PRK10892 114 IPVLKRLHVPLICITGRPESSM 135 (326)
T ss_pred HHHHHHCCCcEEEEECCCCCcc
Confidence 9999999999999999876543
No 428
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=37.34 E-value=25 Score=32.29 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.3
Q ss_pred HHhchhcCCEEEEEcCcCCC
Q 013746 271 RSLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~ 290 (437)
+.+.+++||++|+||+++.-
T Consensus 165 a~~~~~~~Dl~lvvGTSl~V 184 (222)
T cd01413 165 AIEAAKEADLFIVLGSSLVV 184 (222)
T ss_pred HHHHHhcCCEEEEEccCCEe
Confidence 34567899999999999864
No 429
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=37.31 E-value=3.9e+02 Score=25.78 Aligned_cols=115 Identities=14% Similarity=0.199 Sum_probs=68.7
Q ss_pred CcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh--hHHHHHHhhhCCCcEEEEecCCCcc---------C----
Q 013746 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH--GLAGLSNGMINTWPIVMISGSCDQK---------D---- 116 (437)
Q Consensus 52 i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n--~~~gi~~A~~~~~Pvl~I~g~~~~~---------~---- 116 (437)
..++++.||+++++ |.|..++.-..-|++. +|=|-+- ..+++..|...+.=|.+|.-+.... .
T Consensus 65 ~~~~hs~~gra~a~-atGik~A~~~l~Viv~-gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 65 PPWVHSLHGRAAAV-ATGIKLANPALSVIVI-GGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred CCceeeccCcchhh-HHHHHHhccCCeEEEE-ecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 56888999999988 5788888877655544 4555332 3457888888888888886432211 1
Q ss_pred -------CCCCCCCCcchhhhccCc-cceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 117 -------FGRGDFQELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 117 -------~~~~~~q~~d~~~~~~~~-~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
.|+....-+|...++-.. .-|..+....+ +..+.+.++.|...+ ||.+|++=
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~--~~~l~~~i~kA~~~~-Gps~I~v~ 202 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGD--PKDLTEKIKKAAEHK-GPSFIDVL 202 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccC--HHHHHHHHHHHHhcc-CCeEEEEe
Confidence 122111223544433222 44555554333 455556666666665 99999764
No 430
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=37.30 E-value=2.5e+02 Score=26.48 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHH--HHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhHHH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGLAG 94 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l--~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~~g 94 (437)
+.+++.|.+..-=++||.-++..... ...+.+.|+.++...+. . +........+..- ++++-|-.| .-+.+..
T Consensus 119 ~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~-~--~~~~~~~~~~~~D-~vI~iS~sG~t~~~~~~ 194 (284)
T PRK11302 119 NRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDI-V--MQRMSCMNSSDGD-VVVLISHTGRTKSLVEL 194 (284)
T ss_pred HHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCCH-H--HHHHHHHhCCCCC-EEEEEeCCCCCHHHHHH
Confidence 45677777776557777744432221 11233457776655432 1 1112222233332 333433444 5667778
Q ss_pred HHHhhhCCCcEEEEec
Q 013746 95 LSNGMINTWPIVMISG 110 (437)
Q Consensus 95 i~~A~~~~~Pvl~I~g 110 (437)
+..|...+.|+|.||+
T Consensus 195 ~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 195 AQLARENGATVIAITS 210 (284)
T ss_pred HHHHHHcCCeEEEECC
Confidence 8899999999999996
No 431
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=37.28 E-value=1.6e+02 Score=21.76 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|...+..+++.+.+....++|+=+|+. .++.....++|+..|+|++.
T Consensus 15 ~D~~~i~~~Ld~~~~~~~~~~lvhGga~-~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 15 TDHELIWAALDKVHARHPDMVLVHGGAP-KGADRIAARWARERGVPVIR 62 (71)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEECCCC-CCHHHHHHHHHHHCCCeeEE
Confidence 3555666666666554444555544441 36777889999999999875
No 432
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=37.22 E-value=15 Score=39.58 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 145 TEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 145 ~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+.+.+.+++.+..|..|+++-+++..|.
T Consensus 503 ~~~~~~i~~ei~~Ak~g~~~~I~ik~n~ 530 (672)
T TIGR03705 503 KRLLELIDREIENARAGKPARIIAKMNS 530 (672)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3477788888889999888888887775
No 433
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=37.13 E-value=13 Score=33.99 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.3
Q ss_pred HhchhcCCEEEEEcCcCCC
Q 013746 272 SLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~ 290 (437)
.+.++++|++|+||+++.-
T Consensus 162 ~~~~~~~Dl~lvlGTSl~V 180 (218)
T cd01407 162 AEALAKADLLLVIGTSLQV 180 (218)
T ss_pred HHHHhcCCEEEEeCCCccc
Confidence 3556789999999998864
No 434
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=36.77 E-value=28 Score=34.48 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=24.3
Q ss_pred CCcEEEEEcCc-cccCCHHHHHHHHHcCccccc
Q 013746 405 ERLVVAVEGDS-GFGFSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 405 ~~~vv~i~GDG-~f~~~~~eL~Ta~r~~l~i~~ 436 (437)
+..|+++.||| ++-...+.|.-+.+.|.+|+.
T Consensus 151 ~~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~ 183 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGYGGLDHVLASGENVNI 183 (365)
T ss_pred ccceEEEecchhhhccchhhHHHHHHcCCCeEE
Confidence 46888888888 667888888877776666654
No 435
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=36.71 E-value=23 Score=36.64 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEcCCcCccchHHHHH-HHHHHhCCCeeeCCCCCCCCCCCCCC-----cccHHHH
Q 013746 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELK-KLVESTGIPFLPTPMGKGLLPDTHPL-----AATAARS 272 (437)
Q Consensus 205 ~~~~~~~~~~l~~------a~rPvil~G~g~~~~~~~~~l~-~lae~~g~pv~tt~~gkg~~~~~hp~-----~~G~~~~ 272 (437)
+++++.+++.|++ .+...++.|.+........... +|+..+|.+.+.....-...+...-+ .......
T Consensus 76 deAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 155 (477)
T cd02759 76 DEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGFGLGYDE 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhccCCCCCc
Q ss_pred hchhcCCEEEEEcCcCCCccc----cCCCCCCCCCceEEEhH
Q 013746 273 LAIGQCDVALVVGARLNWLLH----FGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~----~~~~~~~~~~~~~i~vd 310 (437)
.-+.+||+||.+|+.+..... ......-.++.++|.||
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klivid 197 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVD 197 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEEC
No 436
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.55 E-value=55 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCEEEecCCCChHHHHHHHHh
Q 013746 20 AAKSLSLFGATHMFGVVGIPVTSLANRAVQ 49 (437)
Q Consensus 20 i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~ 49 (437)
+.+.|++.|++.+|+ ||+....+.+.+++
T Consensus 102 ~~~~l~~~Gv~~vF~-pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 102 VEKRFKEMGFDRVFA-PGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHHcCCCEEEC-cCCCHHHHHHHHHH
No 437
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=36.51 E-value=82 Score=30.57 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
+++...+..+.+-+-+-|.|++-.+. ...+++.+.|++.++|++.|...
T Consensus 67 ~~~~r~~~~~~l~~~~~P~iIvt~~~---~~p~~l~~~a~~~~ipll~t~~~ 115 (308)
T PRK05428 67 SEEERKERLKKLFSLEPPCIIVTRGL---EPPPELLEAAKEAGIPLLRTPLS 115 (308)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHcCCcEEEeCCc
Confidence 45556677777888899999998876 45678999999999999999874
No 438
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=36.51 E-value=74 Score=31.24 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHHHHHHHHH---hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCE
Q 013746 207 DIDKAVSLLK---EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (437)
Q Consensus 207 ~~~~~~~~l~---~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDl 280 (437)
.++++.+.++ .++|++|+.|..... ...+.+.+..+..+ .+.. . ..++ |-.-.. ...+.+ .++|+
T Consensus 11 ~l~~l~~~l~~~~~~~~~liv~d~~~~~-~~~~~v~~~l~~~~-~~~~-~----~~~~--~~~~~v~~~~~~~~~~~~d~ 81 (339)
T cd08173 11 VLEKIPNVLRDLLLGGRVLVVTGPTTKS-IAGKKVEALLEDEG-EVDV-V----IVED--ATYEEVEKVESSARDIGADF 81 (339)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHHHHHHhcC-CeEE-E----EeCC--CCHHHHHHHHHHhhhcCCCE
Confidence 3455555555 358999999888754 56667777776666 3322 1 1221 211111 111222 36899
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
||+||.
T Consensus 82 iIaiGG 87 (339)
T cd08173 82 VIGVGG 87 (339)
T ss_pred EEEeCC
Confidence 999995
No 439
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.46 E-value=29 Score=27.84 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
+|.++++|.|...+-..+.++++++..|+++-..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~ 35 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVD 35 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEE
Confidence 4688999999977777888999999999986543
No 440
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=36.26 E-value=1.8e+02 Score=30.65 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH--H-HHhc-hhcCCE
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--A-RSLA-IGQCDV 280 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~--~-~~~~-l~~aDl 280 (437)
..+++++.+.|.+.++.+|+.-..+..-.+...+.++.+++|..|... +|++.+-..|. . .... -...|+
T Consensus 41 ~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~------ip~r~~~~yg~~~~~i~~~~~~~~~L 114 (539)
T TIGR00644 41 EKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYY------IPNRITEGYGLSPEALREAIENGVSL 114 (539)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEE------eCCCCcccCCCCHHHHHHHHhcCCCE
Confidence 455677777787777766666555544456677888999999887532 23333322221 1 1111 135799
Q ss_pred EEEEcCcCCC
Q 013746 281 ALVVGARLNW 290 (437)
Q Consensus 281 vl~iG~~~~~ 290 (437)
+|++.+....
T Consensus 115 iI~vD~G~~~ 124 (539)
T TIGR00644 115 IITVDNGISA 124 (539)
T ss_pred EEEeCCCccc
Confidence 9999887654
No 441
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=36.16 E-value=94 Score=30.04 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCC-CCCCCCccc
Q 013746 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL-PDTHPLAAT 268 (437)
Q Consensus 210 ~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~-~~~hp~~~G 268 (437)
++++.|.+.+++..++|... +.....+.+++++.++|+++....-..+ .+.+|+++.
T Consensus 61 ~~~~~li~~~~v~aviG~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~ 118 (345)
T cd06338 61 RAYERLITQDKVDFLLGPYS--SGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFG 118 (345)
T ss_pred HHHHHHHhhcCccEEecCCc--chhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEE
Confidence 34444445567889999753 4566778899999999999765432222 244565543
No 442
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=36.08 E-value=3.1e+02 Score=25.74 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCEEEecCCCChHHHHHHH----HhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhh-HhhH
Q 013746 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRA----VQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC-VHGL 92 (437)
Q Consensus 18 ~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al----~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~-~n~~ 92 (437)
+.+++.|.+.+-=++||.-++ ..+...+ ..-|+.++... +...-.. ....-++--++++-|-.|- -..+
T Consensus 119 ~~~~~~i~~a~~I~i~G~G~s--~~~A~~~~~~l~~~g~~~~~~~-d~~~~~~---~~~~~~~~Dv~I~iS~sg~~~~~~ 192 (278)
T PRK11557 119 HECVTMLRSARRIILTGIGAS--GLVAQNFAWKLMKIGINAVAER-DMHALLA---TVQALSPDDLLLAISYSGERRELN 192 (278)
T ss_pred HHHHHHHhcCCeEEEEecChh--HHHHHHHHHHHhhCCCeEEEcC-ChHHHHH---HHHhCCCCCEEEEEcCCCCCHHHH
Confidence 445677777766677776433 3333333 34576665532 2211111 1122233346666566664 4466
Q ss_pred HHHHHhhhCCCcEEEEecCCCcc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQK 115 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~ 115 (437)
..+..|...+.|+|+||+.....
T Consensus 193 ~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 193 LAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCc
Confidence 77889999999999999876443
No 443
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.89 E-value=1.2e+02 Score=28.97 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 210 ~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
++++.+.+.+++..++|... +.....+..++++.++|+++....
T Consensus 57 ~~~~~li~~~~v~aiiG~~~--s~~~~~v~~~~~~~~ip~i~~~~~ 100 (334)
T cd06347 57 NAATRLIDQDKVVAIIGPVT--SGATLAAGPIAEDAKVPMITPSAT 100 (334)
T ss_pred HHHHHHhcccCeEEEEcCCc--cHhHHHhHHHHHHCCCeEEcCCCC
Confidence 33334444468888888743 456677889999999999986543
No 444
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=35.84 E-value=28 Score=32.56 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=16.2
Q ss_pred HHhchhcCCEEEEEcCcCCC
Q 013746 271 RSLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~ 290 (437)
....+.+||++|+||+++.-
T Consensus 172 ~~~~~~~aDl~lviGTSl~V 191 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVV 191 (244)
T ss_pred HHHHHhcCCEEEEeCcCCee
Confidence 33567899999999999864
No 445
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.81 E-value=79 Score=24.67 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=13.0
Q ss_pred hcCCEEEEEcCcCCC
Q 013746 276 GQCDVALVVGARLNW 290 (437)
Q Consensus 276 ~~aDlvl~iG~~~~~ 290 (437)
.++|++|++|..++.
T Consensus 39 ~dAeLviV~G~sipn 53 (103)
T COG3925 39 NDAELVIVFGSSIPN 53 (103)
T ss_pred CcccEEEEeccccCC
Confidence 589999999998864
No 446
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=35.68 E-value=1.1e+02 Score=28.06 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 204 VNSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
.|.++.++++++.+. -||-+++|--+.--++ .+-++...+.++|.++...-||
T Consensus 141 APTAL~~l~~li~~g~~~PalVIG~PVGFV~A-aEsKe~L~~~~iP~It~~GrkG 194 (214)
T PRK08286 141 APTALFRLLEMVEHGQLQVDAVVGVPVGFVGA-AESKEALTESDLPAIAALGRKG 194 (214)
T ss_pred cHHHHHHHHHHHHcCCCCCcEEEEeCCccccH-HHHHHHHHhCCCCEEEEecCCC
Confidence 456788888999874 6899999977654343 3444444568999999988887
No 447
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=35.58 E-value=1.1e+02 Score=25.26 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.++..+.|++.+-.++++...+....-.+.+..+|+..++|++...
T Consensus 35 ~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~ 80 (122)
T PRK04175 35 TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVP 80 (122)
T ss_pred HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEEC
Confidence 4566777888888888888877432335789999999999986543
No 448
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.43 E-value=29 Score=36.41 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhC------CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCC--CCcccHH--HHhc
Q 013746 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH--PLAATAA--RSLA 274 (437)
Q Consensus 205 ~~~~~~~~~~l~~a------~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~h--p~~~G~~--~~~~ 274 (437)
+++++.+++.|++. ++.+++.|.... .....+.+|...+|.|-+.+...-..-+... ....|.. ...=
T Consensus 82 deAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~--~~~~~~~r~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~g~~~~~~~D 159 (523)
T cd02757 82 DEALDTIADKIRALRKENEPHKIMLHRGRYGH--NNSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGGWDYNSYD 159 (523)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEeCCCCC--ccchHHHHHHHHhCcCCCcCCcchhhhHHHHHHHHHhCCCCCCCcc
Confidence 44566666666543 344556665432 2223678999999998553322110000000 0001100 0123
Q ss_pred hhcCCEEEEEcCcCCCccccCC-CCC----CCCCceEEEhH
Q 013746 275 IGQCDVALVVGARLNWLLHFGE-PPK----WSKDVKFVLVD 310 (437)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~~~-~~~----~~~~~~~i~vd 310 (437)
+++||+||.+|+...+...... ... -.+++++|.||
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviD 200 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVD 200 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEEC
Confidence 6899999999987643221110 001 12467999998
No 449
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=35.32 E-value=1.4e+02 Score=28.64 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC----CCCCCCCCCCcccHHHHhch---hcCCEE
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG----KGLLPDTHPLAATAARSLAI---GQCDVA 281 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g----kg~~~~~hp~~~G~~~~~~l---~~aDlv 281 (437)
.++.+.|.+....+|-+|+| |+||+.+..+ ..+|+.| .+...| -+||++
T Consensus 174 ~~~Ik~L~~~g~vVI~~GGG-----------------GIPVv~~~~~~~GVeAVIDKD-------lasalLA~~i~AD~l 229 (312)
T COG0549 174 AEAIKALLESGHVVIAAGGG-----------------GIPVVEEGAGLQGVEAVIDKD-------LASALLAEQIDADLL 229 (312)
T ss_pred HHHHHHHHhCCCEEEEeCCC-----------------CcceEecCCCcceeeEEEccH-------HHHHHHHHHhcCCEE
Confidence 35567777778888888877 5899877553 1123333 122222 379988
Q ss_pred EEEc
Q 013746 282 LVVG 285 (437)
Q Consensus 282 l~iG 285 (437)
|.+=
T Consensus 230 iILT 233 (312)
T COG0549 230 IILT 233 (312)
T ss_pred EEEe
Confidence 7773
No 450
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=35.19 E-value=1.1e+02 Score=30.27 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcC-ccchHHHHHHHHHHhCCCeeeCCCCCCCCC-CCCCCcccHHHHhchhcCCEEEE
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLP-DTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~-~~~~~~~l~~lae~~g~pv~tt~~gkg~~~-~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
+..+++.+.+..+....|++|-|.. .+++...+.++++..+++++.-..-...+. ...|+..-..-..+.+.+|.+|+
T Consensus 90 e~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~viv 169 (349)
T TIGR00065 90 ESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIV 169 (349)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEE
Confidence 3456777788889998888876653 356778889999998887654321100110 11122222223345678999999
Q ss_pred EcC
Q 013746 284 VGA 286 (437)
Q Consensus 284 iG~ 286 (437)
+-.
T Consensus 170 idN 172 (349)
T TIGR00065 170 IPN 172 (349)
T ss_pred EeC
Confidence 953
No 451
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=35.11 E-value=1.2e+02 Score=30.89 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHHHHHHHH-hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 207 DIDKAVSLLK-EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 207 ~~~~~~~~l~-~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
.+.+.+..+. +..+.+.++.....+..+.+++..++++.++|++..
T Consensus 115 taakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 115 TCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFAL 161 (428)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEec
Confidence 4556666664 345666777777788888999999999999999863
No 452
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=35.01 E-value=4e+02 Score=25.31 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCEEEecCCCChHH--HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhHH
Q 013746 17 NTLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGLA 93 (437)
Q Consensus 17 ~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~~ 93 (437)
-+..++.|.+..=-++||.-.+.... +...|.+-|.+++...+..... .+....++=-|+++-|-.| .--.+.
T Consensus 120 l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~----~~~~~~~~~Dv~i~iS~sG~t~e~i~ 195 (281)
T COG1737 120 LERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL----MQLALLTPGDVVIAISFSGYTREIVE 195 (281)
T ss_pred HHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH----HHHHhCCCCCEEEEEeCCCCcHHHHH
Confidence 36677888888878888843333222 2223445577777666665443 2333333222444444444 445567
Q ss_pred HHHHhhhCCCcEEEEecCCCc
Q 013746 94 GLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
.+..|...++|+|.||....+
T Consensus 196 ~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 196 AAELAKERGAKVIAITDSADS 216 (281)
T ss_pred HHHHHHHCCCcEEEEcCCCCC
Confidence 788899999999999987544
No 453
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=34.89 E-value=49 Score=30.83 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCc
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
.+++++++|+++++.+|+.|.|...
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~ 26 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISA 26 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCcccc
Confidence 3678899999999999999999854
No 454
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=34.51 E-value=88 Score=30.93 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcc
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~ 267 (437)
.....++++|. ++.+.++|... +.....+..+++++++|.++.......+.+.+++++
T Consensus 50 ~~~~~~c~ll~--~~V~aiiGp~~--s~~~~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~~f 107 (382)
T cd06380 50 ALTNAICSQLS--RGVFAIFGSYD--KSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQFVL 107 (382)
T ss_pred HHHHHHHHHHh--cCcEEEEecCc--HHHHHHHHHHHhcCCCCeEecCCCcccCCCCCcEEE
Confidence 44667788884 36888888764 456667889999999999976554333445555543
No 455
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=34.31 E-value=22 Score=33.33 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCC-CCCCCceEEEhH
Q 013746 260 PDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP-KWSKDVKFVLVD 310 (437)
Q Consensus 260 ~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~i~vd 310 (437)
-|.+|--......+.++++|++|++|+++.-+...+.+. .-..++++|.||
T Consensus 165 GE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN 216 (250)
T COG0846 165 GEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEIN 216 (250)
T ss_pred CCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEEC
Confidence 344443332334456689999999999986544333111 012456777776
No 456
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=34.29 E-value=30 Score=32.98 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCCCCCcccHHHHhchhcCCEEEEEcCcC
Q 013746 259 LPDTHPLAATAARSLAIGQCDVALVVGARL 288 (437)
Q Consensus 259 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~ 288 (437)
|.|..|...=..+.+.+++||++|+||+++
T Consensus 181 FGE~lp~~~~~~a~~~~~~aDlllviGTSl 210 (271)
T PTZ00409 181 FGEVIPKSLLKQAEKEIDKCDLLLVVGTSS 210 (271)
T ss_pred eCCcCCHHHHHHHHHHHHcCCEEEEECCCC
No 457
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=34.20 E-value=70 Score=31.78 Aligned_cols=72 Identities=26% Similarity=0.270 Sum_probs=41.2
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+.+ .+|++|+.|.... ..+.+.+..++.++.+..-.. + +.+|..-.. ...+.+ .++|+|
T Consensus 10 ~l~~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~----~-~~~p~~~~v~~~~~~~~~~~~D~I 81 (367)
T cd08182 10 AIAKLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDD----V-QPNPDLEDLAAGIRLLREFGPDAV 81 (367)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcC----c-CCCcCHHHHHHHHHHHHhcCcCEE
Confidence 45566666654 4899999988764 445667777777765432111 1 123332211 111222 368999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 82 IavGG 86 (367)
T cd08182 82 LAVGG 86 (367)
T ss_pred EEeCC
Confidence 99995
No 458
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=34.15 E-value=2.6e+02 Score=30.36 Aligned_cols=61 Identities=15% Similarity=0.025 Sum_probs=42.3
Q ss_pred CEEEecCCCChHHHHHHHH----hCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 30 THMFGVVGIPVTSLANRAV----QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 30 ~~vFg~pG~~~~~l~~al~----~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+.|..+|-..+..--.++. -.|++++...+|..|+..|.|..+-.. -.+++.-.|-|.++.
T Consensus 162 ~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~-~~vlV~DlGGGT~Dv 226 (657)
T PTZ00186 162 NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKD-SLIAVYDLGGGTFDI 226 (657)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCC-CEEEEEECCCCeEEE
Confidence 6889999987766444443 369999999999999866655443333 246666777776654
No 459
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=34.10 E-value=4.9e+02 Score=26.25 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCeeeCCC-CCCCCC--CCCCCcccHH-HHhchhcCCEEEEEcC
Q 013746 236 GELKKLVESTGIPFLPTPM-GKGLLP--DTHPLAATAA-RSLAIGQCDVALVVGA 286 (437)
Q Consensus 236 ~~l~~lae~~g~pv~tt~~-gkg~~~--~~hp~~~G~~-~~~~l~~aDlvl~iG~ 286 (437)
..|++||..+++||+...+ .|+.-. ..-|..--.. ....-++||+|+.+-.
T Consensus 334 ~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R 388 (421)
T TIGR03600 334 RGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHR 388 (421)
T ss_pred HHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEecc
Confidence 5689999999999997755 444321 1123211111 1234467999999963
No 460
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.80 E-value=1.4e+02 Score=29.00 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 210 ~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
++++.|...+++.+++|... +.....+.+++++.++|+++...+
T Consensus 57 ~~~~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~vp~i~~~~~ 100 (344)
T cd06345 57 RAFERLVSQDKVDAVVGGYS--SEVVLALQDVAAENKVPFIVTGAA 100 (344)
T ss_pred HHHHHHhccCCceEEECCcc--hHHHHHHHHHHHHcCCcEEeccCC
Confidence 34444445578999999754 455667889999999999986543
No 461
>PRK14974 cell division protein FtsY; Provisional
Probab=33.55 E-value=1e+02 Score=30.32 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
...+.+++..+....+.+.++.....|.++.+++..+++++|+|++....
T Consensus 154 TTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~ 203 (336)
T PRK14974 154 TTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKY 203 (336)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccC
Confidence 44577888888776666666777777778889999999999999986433
No 462
>PRK09330 cell division protein FtsZ; Validated
Probab=33.54 E-value=1.1e+02 Score=30.81 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcC-ccchHHHHHHHHHHhCCCeeeCCCCCCCCCCC-CCCcccHHHHhchhcCCEEE
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDT-HPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~-~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~-hp~~~G~~~~~~l~~aDlvl 282 (437)
++..+++.+.|..+.-..|++|-|.. .+++...+.++++..+++++.-..-.-.+... .++..-..-..+.+.+|.+|
T Consensus 85 ee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vI 164 (384)
T PRK09330 85 EESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLI 164 (384)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEE
Confidence 34567777888889999898886543 35677789999999998865321100001000 01111112234557899999
Q ss_pred EEcC
Q 013746 283 VVGA 286 (437)
Q Consensus 283 ~iG~ 286 (437)
+|-.
T Consensus 165 vi~N 168 (384)
T PRK09330 165 VIPN 168 (384)
T ss_pred EEec
Confidence 9953
No 463
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=33.49 E-value=69 Score=31.87 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEE
Q 013746 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVAL 282 (437)
Q Consensus 207 ~~~~~~~~l~~-a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl 282 (437)
.++++.+.+.+ .+|++|+.|..... ...+.+.+..+..|+.+.... ++. +|-.--. ...+.+ .++|+||
T Consensus 17 ~~~~l~~~l~~~g~~~livtd~~~~~-~~~~~v~~~l~~~~~~~~~~~-----~~~-ep~~~~v~~~~~~~~~~~~d~II 89 (366)
T PRK09423 17 ALARLGEYLKPLGKRALVIADEFVLG-IVGDRVEASLKEAGLTVVFEV-----FNG-ECSDNEIDRLVAIAEENGCDVVI 89 (366)
T ss_pred HHHHHHHHHHHcCCEEEEEEChhHHH-HHHHHHHHHHHhCCCeEEEEE-----eCC-CCCHHHHHHHHHHHHhcCCCEEE
Confidence 34555555543 38899999877653 356677777777777653211 111 1211111 111222 3689999
Q ss_pred EEcC
Q 013746 283 VVGA 286 (437)
Q Consensus 283 ~iG~ 286 (437)
.||.
T Consensus 90 avGG 93 (366)
T PRK09423 90 GIGG 93 (366)
T ss_pred EecC
Confidence 9995
No 464
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.20 E-value=1.3e+02 Score=24.55 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.+++.+.|++.+-.++++...+......+.+..+|+..++|++...
T Consensus 31 ~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 31 TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeC
Confidence 4566677888888888887777432346889999999999977643
No 465
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.19 E-value=1.2e+02 Score=29.94 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccc----hHHHHHHHHHHhCCCeeeCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYAR----AEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~----~~~~l~~lae~~g~pv~tt~~ 254 (437)
++.++++++++++-+-=++++|..-...+ +........|+++||++|...
T Consensus 66 eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 66 EEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 56788999999999989999998654322 334455678899999998644
No 466
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=33.10 E-value=1.3e+02 Score=27.50 Aligned_cols=53 Identities=30% Similarity=0.441 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 204 VNSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
.|.++-++++++++. -||-+++|--+.--++. +-++.....++|.++...-||
T Consensus 136 APTAL~~l~~li~~g~~~PalVIg~PVGFV~A~-ESKe~L~~~~vP~It~~GrkG 189 (210)
T PRK06264 136 APTALFEVIRLVKEEGIKPKLVVGVPVGFVKAA-ESKEALRNTNIPSISTIGPKG 189 (210)
T ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccccHH-HHHHHHHhCCCCEEEEecCCC
Confidence 355678888898875 69999999877543443 344444668999999988887
No 467
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.06 E-value=77 Score=26.71 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh
Q 013746 17 NTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ 49 (437)
Q Consensus 17 ~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~ 49 (437)
.+.+.+.|++.|++.||+ ||+....+.+.+++
T Consensus 101 ~~~~~~~l~~~G~~~vf~-~~~~~~~i~~~l~~ 132 (137)
T PRK02261 101 FEEVEKKFKEMGFDRVFP-PGTDPEEAIDDLKK 132 (137)
T ss_pred hHHHHHHHHHcCCCEEEC-cCCCHHHHHHHHHH
No 468
>PRK13663 hypothetical protein; Provisional
Probab=33.05 E-value=75 Score=32.00 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHHh----HhCCcEEEEEcCChhhHhhHHHHHHhhhCCC
Q 013746 68 SAYGY----LTGKPGILLTVSGPGCVHGLAGLSNGMINTW 103 (437)
Q Consensus 68 ~gyar----~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~ 103 (437)
+||++ -|-||=|+++-.|||..-+.+-|..-|.++.
T Consensus 156 eGyGkN~yIeTtrpLVVVTAPGPGSGKlATCLSQlYhe~k 195 (493)
T PRK13663 156 EGYGKNDYIETTRPLVVVTAPGPGSGKLATCLSQLYHDQK 195 (493)
T ss_pred CCCCCCCceeccCCeEEEeCCCCCccHHHHHHHHHHHHhh
Confidence 46766 4678999999999998888888877777654
No 469
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.72 E-value=91 Score=24.82 Aligned_cols=55 Identities=29% Similarity=0.305 Sum_probs=38.3
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGA 286 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~ 286 (437)
++.++++..|...+-.....++.|+.-|..+.-.-.+.. ...+.+.++|++| +|-
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~------------e~~~~~~~~DvvL-lGP 56 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSET------------ELSEYIDNADVVL-LGP 56 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechh------------HHHHhhhcCCEEE-ECh
Confidence 467899999998877888899999997777654322211 2345667889765 453
No 470
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=32.50 E-value=75 Score=31.49 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHH
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae 243 (437)
.++++.+.+. .+|++|+.|.+....+..+.+.+..+
T Consensus 13 ~~~~l~~~~~-~~r~lvVtd~~~~~~g~~~~v~~~L~ 48 (355)
T TIGR03405 13 SLALAPQLLH-GRRVVVVTFPEARALGLARRLEALLG 48 (355)
T ss_pred HHHHHHHHhC-CCeEEEEECcchhhcchHHHHHHHhc
Confidence 4555555553 58999999988765555555555443
No 471
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=32.44 E-value=34 Score=38.97 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCCCC--CCCCcccHH----HHhchhcCCEEEEEcCcCCCccccC--CC-CCCCCCceE
Q 013746 236 GELKKLVESTGIPFLPTPMGKGLLPD--THPLAATAA----RSLAIGQCDVALVVGARLNWLLHFG--EP-PKWSKDVKF 306 (437)
Q Consensus 236 ~~l~~lae~~g~pv~tt~~gkg~~~~--~hp~~~G~~----~~~~l~~aDlvl~iG~~~~~~~~~~--~~-~~~~~~~~~ 306 (437)
-.+.+|++.+|.+-+.....-...+. .....+|.. ...=+.+||+||++|+...+..... +. ..-..++++
T Consensus 174 yl~~kf~r~lGt~n~~~~~~~C~~~~~~al~~~~G~~~~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~Gaki 253 (1009)
T TIGR01553 174 WLYQKWLRSLGLFYIEHQARIUHSPTVASLAPSFGRGAMTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKI 253 (1009)
T ss_pred HHHHHHHHHhCCCcccCcccccccHHHHHHHHhhcCCCCCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEE
Confidence 35678999888765433211000000 001112210 0122678999999999875432111 10 001246799
Q ss_pred EEhH
Q 013746 307 VLVD 310 (437)
Q Consensus 307 i~vd 310 (437)
|.||
T Consensus 254 IvID 257 (1009)
T TIGR01553 254 IHID 257 (1009)
T ss_pred EEEc
Confidence 9998
No 472
>PRK05953 precorrin-8X methylmutase; Validated
Probab=32.32 E-value=1.3e+02 Score=27.36 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 204 VNSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
.|.++-++++++.+. -||-+++|--+---++.+.=.+| .+.++|.++...-||
T Consensus 128 APTAL~~l~~li~~g~~~PalVIG~PVGFV~AaESKe~L-~~~~vP~It~~GrkG 181 (208)
T PRK05953 128 SQTALTALVELVEAEEIRPALVIATPAGFIDADDAKERL-QDSLVPHITIDGRKG 181 (208)
T ss_pred cHHHHHHHHHHHHhcCCCCCEEEEeCCcccCcHHHHHHH-HhCCCCEEEEeCCCC
Confidence 355677888888765 59999999877544544444444 568999999988787
No 473
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=32.32 E-value=82 Score=31.06 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEE
Q 013746 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVAL 282 (437)
Q Consensus 207 ~~~~~~~~l~~-a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl 282 (437)
.++++.+.+++ .+|++|+.|..... ...+.+.+..++.|+.+...... + +|-.-.. ...+.+ .++|+||
T Consensus 10 ~~~~l~~~~~~~g~~~liv~~~~~~~-~~~~~v~~~l~~~~i~~~~~~~~-~-----~p~~~~v~~~~~~~~~~~~d~II 82 (349)
T cd08550 10 AIKEIAAILSTFGSKVAVVGGKTVLK-KSRPRFEAALAKSIIVVDVIVFG-G-----ECSTEEVVKALCGAEEQEADVII 82 (349)
T ss_pred HHHHHHHHHHHcCCeEEEEEChHHHH-HHHHHHHHHHHhcCCeeEEEEcC-C-----CCCHHHHHHHHHHHHhcCCCEEE
Confidence 34555555543 37888988876644 45667777777767653221111 1 1211111 111122 3689999
Q ss_pred EEcC
Q 013746 283 VVGA 286 (437)
Q Consensus 283 ~iG~ 286 (437)
.||.
T Consensus 83 avGG 86 (349)
T cd08550 83 GVGG 86 (349)
T ss_pred EecC
Confidence 9995
No 474
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=32.29 E-value=1.4e+02 Score=26.72 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhCC-CcEEEEcCCcCc-cchHH-----HHHHHHHHhCCCeeeCCCCCCCC--CCCCCCcccHHHH
Q 013746 202 GIVNSDIDKAVSLLKEAK-KPLIVFGKGAAY-ARAEG-----ELKKLVESTGIPFLPTPMGKGLL--PDTHPLAATAARS 272 (437)
Q Consensus 202 ~~~~~~~~~~~~~l~~a~-rPvil~G~g~~~-~~~~~-----~l~~lae~~g~pv~tt~~gkg~~--~~~hp~~~G~~~~ 272 (437)
..+++.++.+++.|+++. +++++..+.... ....+ ...+++++.|++++..-...... .....+.-.....
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 98 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAEEYGAELVDLDDEPWVEVPLPGGEHLKEFKVP 98 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHHhcCCcEEEccCCcccceeccCCeeeeeEEhh
Confidence 456888999999998653 334444332221 11111 24566667777776544332211 1111122222334
Q ss_pred hchhcCCEEEEEc
Q 013746 273 LAIGQCDVALVVG 285 (437)
Q Consensus 273 ~~l~~aDlvl~iG 285 (437)
..+.++|++|.+=
T Consensus 99 ~~~~eaD~iInvp 111 (206)
T PF04015_consen 99 RILLEADVIINVP 111 (206)
T ss_pred HHHHhCCEEEEec
Confidence 5677899999984
No 475
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=32.26 E-value=59 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
.-|.+++=+. ....+.++++|++.|+|++.++.
T Consensus 16 ~aP~VvAKG~---g~~A~~I~~~A~e~~VPi~~~~~ 48 (82)
T TIGR00789 16 KAPKVVASGV---GEVAERIIEIAKKHGIPIVEDPD 48 (82)
T ss_pred CCCEEEEEeC---CHHHHHHHHHHHHcCCCEEeCHH
Confidence 3577776332 14568899999999999997653
No 476
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=32.21 E-value=92 Score=31.41 Aligned_cols=56 Identities=29% Similarity=0.308 Sum_probs=35.1
Q ss_pred hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 217 EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 217 ~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
+++|.-|+. -...|-++.++|+..|+.+|+|+..-...+. + ..+...++++|+||+
T Consensus 232 ~~~kVaiIT-tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~e---------l-~~ai~~l~~~d~ILV 287 (407)
T COG1419 232 KKKKVAIIT-TDTYRIGAVEQLKTYADIMGVPLEVVYSPKE---------L-AEAIEALRDCDVILV 287 (407)
T ss_pred cCcceEEEE-eccchhhHHHHHHHHHHHhCCceEEecCHHH---------H-HHHHHHhhcCCEEEE
Confidence 444444444 2344567888899999999998876444222 0 123356788999886
No 477
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=31.80 E-value=1.6e+02 Score=22.58 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+.+..+.|++.+--++++...+. ......+..+||..++||+....
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~-~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVE-VYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEECC
Confidence 56777788876666777766765 34668899999999999986544
No 478
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=31.65 E-value=1.1e+02 Score=29.88 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 205 ~~~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
...++++.+.+++ .+|++|+.|..... +..+.+.+..++. +.+..-..-.+- |...-..-+...... .++|+||
T Consensus 8 ~g~l~~l~~~~~~~g~~~~liv~~~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~-p~~~~v~~~~~~~~~-~~~d~II 83 (332)
T cd07766 8 EGAIEKIGEEIKRGGFDRALVVSDEGVVK-GVGEKVADSLKKL-IAVHIFDGVGPN-PTFEEVKEAVERARA-AEVDAVI 83 (332)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEeCCchhh-hHHHHHHHHHHhc-CcEEEeCCcCCC-cCHHHHHHHHHHHHh-cCcCEEE
Q ss_pred EEc
Q 013746 283 VVG 285 (437)
Q Consensus 283 ~iG 285 (437)
.||
T Consensus 84 aiG 86 (332)
T cd07766 84 AVG 86 (332)
T ss_pred EeC
No 479
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.54 E-value=1.1e+02 Score=23.47 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcC
Q 013746 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288 (437)
Q Consensus 234 ~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~ 288 (437)
+.+.|++.|++.|+-+.....|-..+... ...+-++++|+||++|...
T Consensus 2 AAeaL~~aA~~~G~~i~VEtqg~~g~~~~-------lt~~~i~~Ad~VIia~d~~ 49 (88)
T PRK10474 2 AAEALESAAKAKGWEVKVETQGSIGLENE-------LTAEDVASADMVILTKDIG 49 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcCCC-------CCHHHHHhCCEEEEEecCC
Confidence 35789999999999988777764433221 1125578999999999765
No 480
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=31.53 E-value=1.3e+02 Score=26.50 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEec
Q 013746 37 GIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 37 G~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~I~g 110 (437)
|.....+.+.+++.|+++...+.+...-- .-.. .++-.++++.|||..+ ....+..+..++.|+|-|+-
T Consensus 8 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~----~~~~-~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 79 (184)
T cd01743 8 DSFTYNLVQYLRELGAEVVVVRNDEITLE----ELEL-LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCL 79 (184)
T ss_pred CccHHHHHHHHHHcCCceEEEeCCCCCHH----HHhh-cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECH
Confidence 45556677777777888877777544211 1112 3455577788888543 45567777778899999983
No 481
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=31.26 E-value=31 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCcchHHHHHHHhHhC-----CCCcEEEEEcCcccc
Q 013746 387 GTMGVGLGYCIAAAIAC-----PERLVVAVEGDSGFG 418 (437)
Q Consensus 387 g~mG~~lpaAiGaala~-----p~~~vv~i~GDG~f~ 418 (437)
+.+-..+|-|+|++-+- .++.+|+..|||+-.
T Consensus 193 splatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aS 229 (432)
T KOG1182|consen 193 SPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAAS 229 (432)
T ss_pred chhhhccchhhhhhhhhhhcccCCeEEEEEecCCccc
Confidence 44566788888876663 247899999999854
No 482
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=31.18 E-value=38 Score=28.53 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=27.4
Q ss_pred CcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 220 rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
-.|+++|..+..++...++++|+++++++.+
T Consensus 10 vVVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv 40 (148)
T PF06711_consen 10 VVVFIVGFRVLTSDTRRAIRRLSERLNIKPV 40 (148)
T ss_pred HHhheeeEEecccchHHHHHHHHHHhCCCce
Confidence 3678999999999999999999999999544
No 483
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=30.91 E-value=3.2e+02 Score=27.55 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHhcCCCEEEe-cCCCChHHHHHHHHhCCCcEeec-cchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 15 DGNTLAAKSLSLFGATHMFG-VVGIPVTSLANRAVQLGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg-~pG~~~~~l~~al~~~~i~~i~~-~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
..-+.+.+.|++. +-|+. .|+.....+++++.+.|+.++.+ -||..- +.=+.-++..|-.++.=+-.-||++|++
T Consensus 57 ~d~~al~~li~~~--d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~nv~ 133 (389)
T COG1748 57 ADVDALVALIKDF--DLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITNVL 133 (389)
T ss_pred cChHHHHHHHhcC--CEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHHHH
Confidence 3456788888888 55554 57777788888888889998854 444442 2223333344443444445569999999
Q ss_pred HHHHHhhhC--CCcEEEEecCCCc
Q 013746 93 AGLSNGMIN--TWPIVMISGSCDQ 114 (437)
Q Consensus 93 ~gi~~A~~~--~~Pvl~I~g~~~~ 114 (437)
.+-+.+..+ -.-+-+..|..+.
T Consensus 134 a~~a~~~~~~~i~si~iy~g~~g~ 157 (389)
T COG1748 134 AAYAAKELFDEIESIDIYVGGLGE 157 (389)
T ss_pred HHHHHHHhhccccEEEEEEecCCC
Confidence 998777776 3334444444443
No 484
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=30.86 E-value=1.4e+02 Score=28.95 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
++.+.+++ ..+++..++|... +.....+..++++.++|+++....
T Consensus 55 ~~~a~~l~-~~~~v~~viG~~~--s~~~~a~~~~~~~~~ip~i~~~~~ 99 (350)
T cd06366 55 ASAALDLL-ENKPVVAIIGPQC--SSVAEFVAEVANEWNVPVLSFAAT 99 (350)
T ss_pred HHHHHHHh-ccCCceEEECCCc--HHHHHHHHHHhhcCCeeEEeccCC
Confidence 34444444 4578999999754 466677889999999999986543
No 485
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=30.70 E-value=1.1e+02 Score=24.94 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcC
Q 013746 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288 (437)
Q Consensus 233 ~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~ 288 (437)
-+.+.|++-+++.|+.+.....|...+... + ..+-++++|+||.+|...
T Consensus 20 lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~--l-----t~~~i~~Ad~VIia~d~~ 68 (114)
T PRK10427 20 MAAERLEKLCQLEKWGVKIETQGALGTENR--L-----TDEDIRRADVVLLITDIE 68 (114)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCcCCC--C-----CHHHHHhCCEEEEEecCC
Confidence 356889999999999998777664332221 1 135578999999999865
No 486
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.47 E-value=1.7e+02 Score=27.48 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
...+....+.++.+.+++.+-++|+.-.... +...+.+.++++.+|+|++.
T Consensus 187 ~~~ps~~~l~~l~~~ik~~~v~~if~e~~~~-~k~~~~l~~la~~~~~~v~~ 237 (264)
T cd01020 187 ETEPSPADIAAFQNAIKNRQIDALIVNPQQA-SSATTNITGLAKRSGVPVVE 237 (264)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEeCCCCC-cHHHHHHHHHHHHcCCCEEe
Confidence 4456788899999999998889999987763 45566777899999999975
No 487
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=30.43 E-value=85 Score=30.79 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=37.7
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|.+.... ..+.+.+..+..++-++. +.- .+|-.--. ...+.+ .++|+|
T Consensus 10 ~l~~l~~~l~~~g~~~~livt~~~~~~~-~~~~v~~~l~~~~~~~~~-----~~~--~~p~~~~v~~~~~~~~~~~~d~I 81 (337)
T cd08177 10 ALAALAAELERLGASRALVLTTPSLATK-LAERVASALGDRVAGTFD-----GAV--MHTPVEVTEAAVAAAREAGADGI 81 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEEcChHHHHH-HHHHHHHHhccCCcEEeC-----CCC--CCCCHHHHHHHHHHHHhcCCCEE
Confidence 35556566653 479999998776543 455555555544332221 111 12222111 111222 478999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 82 IaiGG 86 (337)
T cd08177 82 VAIGG 86 (337)
T ss_pred EEeCC
Confidence 99995
No 488
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=30.38 E-value=1.5e+02 Score=26.96 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 204 VNSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
.|.++-++++++.+. -||-+++|--+.--++ .+-++...+.++|.++...-||
T Consensus 135 APTAL~~l~~li~~g~~~PalVIG~PVGFV~A-~ESKe~L~~~~vP~It~~G~kG 188 (204)
T PRK05575 135 APTALYKLKELIKEGKANPKFIIAVPVGFVGA-AESKEELEKLDIPYITVRGRKG 188 (204)
T ss_pred cHHHHHHHHHHHHcCCCCCCEEEEeCCccccH-HHHHHHHHhCCCCEEEEecCCC
Confidence 355677888888765 4899999977654343 3444444668999999988777
No 489
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=30.34 E-value=1e+02 Score=30.10 Aligned_cols=174 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCc---------chhhhccCccceeeecCCcCchH
Q 013746 78 GILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL---------DQVEAVKPFSKFAVKAKDITEVP 148 (437)
Q Consensus 78 ~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~---------d~~~~~~~~~k~~~~v~~~~~~~ 148 (437)
|++++|.-==+.-....|.-...+..||++..+++|....+.+..+.+ .+.....-++.+..++-+..++.
T Consensus 81 GiVVtHGTDTmeeTA~~L~~~l~~~kPVVlTGA~rp~~~~~sDg~~NL~~Al~~A~~~~~~~~gV~V~f~~~i~~a~~v~ 160 (323)
T cd00411 81 GFVITHGTDTMEETAYFLSLTLENDKPVVLTGSMRPSTELSADGPLNLYNAVYVAANYDSRGRGVLVVFNDRIFRGRRVT 160 (323)
T ss_pred cEEEEcCcccHHHHHHHHHHHhcCCCCEEEECCCCCCCCcCcchHHHHHHHHHHHcCcccCCCeEEEEECCEEeccCceE
Q ss_pred HHHHHHHHHhhcCCCcee------EEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcE
Q 013746 149 KCVAQVLERAVSGRPGGC------YLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPL 222 (437)
Q Consensus 149 ~~l~~A~~~a~~~~~GPv------~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPv 222 (437)
+.=...+..-.+...||+ .+.+-....................+........+..+...++ .++...-|-+
T Consensus 161 K~~t~~~daF~s~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~pG~~~~~l~---~~~~~g~~Gi 237 (323)
T cd00411 161 KTHALSLDAFVSPNYGPLGYIVEDKVYYYRSVFKAHTINSEFDVKLNSLPKVGILYLYPGISAEAVR---AFLRAGYKGI 237 (323)
T ss_pred EccCCCCCCCCCCCCCeeEEEECCEEEEccCCcCCCCCCccccccCCCCCCEEEEEECCCCCHHHHH---HHHhCCCCEE
Q ss_pred EEEcCCcCc--cchHHHHHHHHHHhCCCeeeCCCC
Q 013746 223 IVFGKGAAY--ARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 223 il~G~g~~~--~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
|+.|.|.-+ ....+.|+++.++ |+||+.+.+.
T Consensus 238 Vl~~~G~Gn~p~~~~~~l~~a~~~-gi~VV~~Sq~ 271 (323)
T cd00411 238 VLAGYGAGNVPTDLIDELEEAAER-GVVVVNSTQC 271 (323)
T ss_pred EEEeECCCCCCHHHHHHHHHHHHC-CCEEEEecCC
No 490
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=30.32 E-value=55 Score=36.07 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCc------ccHHHHhchhc
Q 013746 205 NSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA------ATAARSLAIGQ 277 (437)
Q Consensus 205 ~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~------~G~~~~~~l~~ 277 (437)
+++++.+++.|++. ..-+.+.+.|-..-...-....|++.+|.+-+.+...-..-+...-+. .+.....=+++
T Consensus 119 dEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~ 198 (743)
T TIGR01701 119 DDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFEH 198 (743)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCCCCCCCHhHHHh
Q ss_pred CCEEEEEcCcCCCccccCCCCCC---CCCceEEEhH
Q 013746 278 CDVALVVGARLNWLLHFGEPPKW---SKDVKFVLVD 310 (437)
Q Consensus 278 aDlvl~iG~~~~~~~~~~~~~~~---~~~~~~i~vd 310 (437)
||+||++|+.............. ..++|+|.||
T Consensus 199 ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvId 234 (743)
T TIGR01701 199 TDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAIN 234 (743)
T ss_pred CCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEEC
No 491
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=30.30 E-value=1.5e+02 Score=22.52 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.++..+.|++-+--++++...+.. ...+.+..+|+..++|++...
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 345566677767667777766643 577889999999999998654
No 492
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.12 E-value=88 Score=33.31 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEcCCcCccchHHHHHHHHHHhCCCeee--CCCCCCCCCCCCCCccc----HHHHhchh
Q 013746 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLP--TPMGKGLLPDTHPLAAT----AARSLAIG 276 (437)
Q Consensus 205 ~~~~~~~~~~l~~a--~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t--t~~gkg~~~~~hp~~~G----~~~~~~l~ 276 (437)
+++++.+++.|++. ++.+++.++... -...-....|++.+|.+-+. +.+.-..-....+..+| ....+=+.
T Consensus 84 DEAl~~IA~kL~~~~~~~~~~y~sg~~s-nE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~ 162 (574)
T cd02767 84 DEAFAEIAARLRALDPDRAAFYTSGRAS-NEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDFE 162 (574)
T ss_pred HHHHHHHHHHHhhhCCCcEEEEecCCCc-cHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCCCCCCHHHHh
Q ss_pred cCCEEEEEcCcC
Q 013746 277 QCDVALVVGARL 288 (437)
Q Consensus 277 ~aDlvl~iG~~~ 288 (437)
+||+||++|+..
T Consensus 163 ~ad~Il~~G~Np 174 (574)
T cd02767 163 HTDLIFFIGQNP 174 (574)
T ss_pred cCCEEEEEcCCh
No 493
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=29.45 E-value=1.2e+02 Score=23.32 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
+.++.+.|.+.+.-++++-..+......+.+..+|++.++|++...
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 4567777888787777777777543333448999999999998654
No 494
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=29.40 E-value=44 Score=23.46 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=27.0
Q ss_pred CCcHHHHHH------HHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEe
Q 013746 13 QIDGNTLAA------KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFI 55 (437)
Q Consensus 13 ~~~~~~~i~------~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i 55 (437)
.++++++++ +.|+++||++..| | ..+|-+++.+.++..-
T Consensus 2 ~~tVgeiv~~~p~~a~vf~~~gIDfCCg--G--~~~L~eA~~~~~ld~~ 46 (56)
T PF04405_consen 2 DQTVGEIVAEDPRAARVFRKYGIDFCCG--G--NRSLEEACEEKGLDPE 46 (56)
T ss_pred cCCHHHHHHHChHHHHHHHHcCCcccCC--C--CchHHHHHHHcCCCHH
Confidence 355666554 7899999998866 3 3567777777776543
No 495
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=29.26 E-value=66 Score=30.21 Aligned_cols=39 Identities=31% Similarity=0.534 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~ 260 (437)
+++++++|++|+|.+++.|.|+.-+ .|+|-+- ...|.++
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~------------sGIpdFR--~~~Gl~~ 40 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAE------------SGIPDFR--SKDGLWS 40 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccc------------cCCCccc--CCCCCCC
Confidence 5678899999999999999998533 5788775 2335666
No 496
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=29.01 E-value=1.2e+02 Score=29.71 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEe
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFI 55 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i 55 (437)
...+.+++.|+++||+.+|.+-|+..+.-...|.+.++++|
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vi 119 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCV 119 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEE
Confidence 46788999999999999999999988877777766556555
No 497
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=28.99 E-value=1.4e+02 Score=32.95 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCC-----CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCccc---HHHHhchh
Q 013746 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT---AARSLAIG 276 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~-----rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G---~~~~~~l~ 276 (437)
+++++.+++.|++.+ +-+.+.+.+-........+.+|++.+|.+.+...............+.. .....-+.
T Consensus 290 deAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~~~~~~g~~~~~~~~~Di~ 369 (776)
T PRK09129 290 ETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDFRDDAAAPGAPWLGMPIAELS 369 (776)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCccccchhhhhcccccCCCHHHHH
Q ss_pred cCCEEEEEcCcCCC
Q 013746 277 QCDVALVVGARLNW 290 (437)
Q Consensus 277 ~aDlvl~iG~~~~~ 290 (437)
+||+||.+|+.+..
T Consensus 370 ~ad~Il~~G~N~~~ 383 (776)
T PRK09129 370 NLDAVLVVGSNLRK 383 (776)
T ss_pred hCCEEEEEecCcch
No 498
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=28.87 E-value=2.9e+02 Score=23.83 Aligned_cols=38 Identities=16% Similarity=-0.031 Sum_probs=20.7
Q ss_pred CCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCcc
Q 013746 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 416 (437)
Q Consensus 376 ~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~ 416 (437)
+|.-.+...+ .+...++++...|... .-|+++|+||..
T Consensus 63 ~~~v~~~t~G-pG~~n~~~~l~~A~~~--~~Pvl~I~g~~~ 100 (164)
T cd07039 63 KLGVCLGSSG-PGAIHLLNGLYDAKRD--RAPVLAIAGQVP 100 (164)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHHhc--CCCEEEEecCCc
Confidence 4544444433 2344455554444433 468888888755
No 499
>PRK02947 hypothetical protein; Provisional
Probab=28.85 E-value=1.8e+02 Score=27.09 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC--C---CcEeecc----chHH----HHHHHHHH-------HhHh
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL--G---VRFIAFH----NEQS----AGYAASAY-------GYLT 74 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~--~---i~~i~~~----~E~~----A~~~A~gy-------ar~t 74 (437)
..++.+++.|.+.+-=++||.-++... ...+... + ++.+.-. +... +.....+| ...+
T Consensus 28 ~aa~lla~~i~~a~~I~i~G~G~S~~v--A~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (246)
T PRK02947 28 KAADLIADSIRNGGLIYVFGTGHSHIL--AEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIR 105 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHH--HHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCC
Confidence 577888899988888888888655432 2222110 1 1111100 0000 10011111 1122
Q ss_pred CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCC
Q 013746 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 75 g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
.+=.+++.+...-.-+.+..+..|...++|+|.||+...
T Consensus 106 ~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 106 PGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 222232333233455677788889999999999999764
No 500
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=28.79 E-value=1.1e+02 Score=34.24 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHH--HhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE--STGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCD 279 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae--~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aD 279 (437)
+..++++-+.+...+|++|+.|......+..+.+.+..+ ..++.+.. +.+ + +.+|-.-.. .....+ .++|
T Consensus 467 ~g~l~~l~~~l~~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~-~~~--v--~~np~~~~v~~~~~~~~~~~~D 541 (862)
T PRK13805 467 RGSLPYLLDELDGKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEV-FSE--V--EPDPTLSTVRKGAELMRSFKPD 541 (862)
T ss_pred CCHHHHHHHHhcCCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEE-eCC--C--CCCcCHHHHHHHHHHHHhcCCC
Confidence 345677776776779999999988765556677777666 55665432 111 1 112322111 111222 4799
Q ss_pred EEEEEcC
Q 013746 280 VALVVGA 286 (437)
Q Consensus 280 lvl~iG~ 286 (437)
+||.||.
T Consensus 542 ~IIaiGG 548 (862)
T PRK13805 542 TIIALGG 548 (862)
T ss_pred EEEEeCC
Confidence 9999995
Done!