Query 013746
Match_columns 437
No_of_seqs 210 out of 1169
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q28_A Oxalyl-COA decarboxylas 100.0 5.5E-83 1.9E-87 669.8 33.0 419 12-437 6-470 (564)
2 2c31_A Oxalyl-COA decarboxylas 100.0 8.6E-83 2.9E-87 668.7 34.2 420 12-437 8-475 (568)
3 4feg_A Pyruvate oxidase; carba 100.0 7.7E-81 2.6E-85 657.3 38.8 413 10-437 7-470 (603)
4 3eya_A Pyruvate dehydrogenase 100.0 1.9E-81 6.5E-86 655.6 33.7 406 12-437 1-456 (549)
5 1ybh_A Acetolactate synthase, 100.0 1.6E-80 5.4E-85 654.0 35.5 413 12-437 10-476 (590)
6 1t9b_A Acetolactate synthase, 100.0 3.7E-80 1.3E-84 657.0 34.8 422 13-437 81-563 (677)
7 2pgn_A Cyclohexane-1,2-dione h 100.0 2.3E-80 7.8E-85 652.4 32.7 411 12-437 2-474 (589)
8 1ozh_A ALS, acetolactate synth 100.0 7E-80 2.4E-84 645.7 35.9 409 12-437 9-470 (566)
9 1q6z_A BFD, BFDC, benzoylforma 100.0 1.3E-79 4.4E-84 639.4 33.7 412 13-437 1-451 (528)
10 2uz1_A Benzaldehyde lyase; thi 100.0 7.6E-80 2.6E-84 645.6 30.8 414 12-437 2-471 (563)
11 2iht_A Carboxyethylarginine sy 100.0 7.3E-79 2.5E-83 639.2 26.8 408 13-437 11-486 (573)
12 1v5e_A Pyruvate oxidase; oxido 100.0 7.3E-78 2.5E-82 633.1 34.2 409 13-437 3-463 (590)
13 2pan_A Glyoxylate carboligase; 100.0 5.2E-78 1.8E-82 637.8 33.3 412 13-437 26-492 (616)
14 2wvg_A PDC, pyruvate decarboxy 100.0 4.6E-78 1.6E-82 632.8 32.2 412 13-437 2-463 (568)
15 2vbi_A Pyruvate decarboxylase; 100.0 1.4E-77 4.9E-82 628.8 30.2 412 13-437 2-459 (566)
16 2nxw_A Phenyl-3-pyruvate decar 100.0 3.4E-78 1.2E-82 632.8 24.4 416 2-437 10-472 (565)
17 2vk8_A Pyruvate decarboxylase 100.0 1.3E-77 4.3E-82 629.0 26.4 412 12-437 2-467 (563)
18 2x7j_A 2-succinyl-5-enolpyruvy 100.0 5E-77 1.7E-81 628.7 30.3 414 12-437 29-504 (604)
19 3lq1_A 2-succinyl-5-enolpyruvy 100.0 5.6E-77 1.9E-81 625.3 29.3 421 6-437 3-484 (578)
20 1ovm_A Indole-3-pyruvate decar 100.0 2.9E-76 9.9E-81 617.6 29.2 410 11-437 2-458 (552)
21 3hww_A 2-succinyl-5-enolpyruvy 100.0 1.1E-75 3.7E-80 612.8 25.1 413 12-437 6-465 (556)
22 2vbf_A Branched-chain alpha-ke 100.0 3.7E-75 1.3E-79 611.0 25.5 410 12-437 23-475 (570)
23 3cf4_G Acetyl-COA decarboxylas 99.7 5E-19 1.7E-23 155.7 1.5 104 205-310 21-140 (170)
24 1yd7_A 2-keto acid:ferredoxin 99.7 5.9E-17 2E-21 161.2 10.0 163 12-177 21-192 (395)
25 1ytl_A Acetyl-COA decarboxylas 99.7 1.2E-18 4.2E-23 152.5 -2.2 101 208-310 24-142 (174)
26 2c42_A Pyruvate-ferredoxin oxi 98.9 4.9E-10 1.7E-14 125.1 4.6 154 12-170 5-170 (1231)
27 2o1x_A 1-deoxy-D-xylulose-5-ph 98.7 1E-08 3.6E-13 107.8 6.3 55 383-437 119-179 (629)
28 2bfd_A 2-oxoisovalerate dehydr 98.5 4.3E-08 1.5E-12 97.2 4.4 53 385-437 160-218 (400)
29 1w85_A Pyruvate dehydrogenase 98.5 8.9E-08 3E-12 93.8 4.5 54 384-437 139-198 (368)
30 1umd_A E1-alpha, 2-OXO acid de 98.4 1.1E-07 3.6E-12 93.5 4.4 49 389-437 150-200 (367)
31 2o1s_A 1-deoxy-D-xylulose-5-ph 98.4 9.3E-08 3.2E-12 100.5 4.2 53 385-437 119-177 (621)
32 1qs0_A 2-oxoisovalerate dehydr 98.4 1.7E-07 5.9E-12 92.8 4.2 53 385-437 179-237 (407)
33 2ozl_A PDHE1-A type I, pyruvat 98.4 2E-07 6.7E-12 91.2 4.4 54 384-437 137-196 (365)
34 3mos_A Transketolase, TK; thia 98.3 1.7E-07 5.9E-12 98.0 3.8 52 385-436 119-177 (616)
35 3l84_A Transketolase; TKT, str 98.3 3.7E-07 1.3E-11 95.4 6.0 51 385-435 112-175 (632)
36 3uk1_A Transketolase; structur 98.2 2.8E-07 9.5E-12 97.5 2.5 51 385-435 153-219 (711)
37 3kom_A Transketolase; rossmann 98.2 3.2E-07 1.1E-11 96.5 2.4 51 385-435 114-180 (663)
38 3m49_A Transketolase; alpha-be 98.2 1E-06 3.5E-11 93.0 5.7 51 385-435 138-204 (690)
39 2r8o_A Transketolase 1, TK 1; 98.2 5E-07 1.7E-11 95.6 2.7 52 384-435 111-178 (669)
40 2c42_A Pyruvate-ferredoxin oxi 98.2 1.6E-05 5.4E-10 89.1 14.6 86 352-437 828-986 (1231)
41 2e6k_A Transketolase; structur 98.2 5.6E-07 1.9E-11 94.9 2.6 51 385-435 116-182 (651)
42 1itz_A Transketolase; calvin c 98.1 7.1E-07 2.4E-11 94.4 3.2 50 385-434 125-190 (675)
43 1gpu_A Transketolase; transfer 98.1 8.6E-07 3E-11 93.9 2.6 51 385-435 114-180 (680)
44 1r9j_A Transketolase; domains, 97.9 3.3E-06 1.1E-10 89.3 2.5 51 385-435 114-180 (673)
45 3rim_A Transketolase, TK; TPP, 96.9 0.00027 9.1E-09 74.6 2.2 52 385-436 131-202 (700)
46 2qtc_A Pyruvate dehydrogenase 96.4 0.0014 4.9E-08 70.8 3.6 49 385-433 190-251 (886)
47 2yic_A 2-oxoglutarate decarbox 96.1 0.0013 4.3E-08 71.1 1.1 49 385-433 243-308 (868)
48 1qs0_B 2-oxoisovalerate dehydr 95.6 0.16 5.5E-06 48.7 13.5 117 52-176 52-179 (338)
49 1w85_B Pyruvate dehydrogenase 95.5 0.066 2.3E-06 51.1 10.4 117 52-176 50-177 (324)
50 2r8o_A Transketolase 1, TK 1; 95.5 0.096 3.3E-06 55.1 12.3 118 51-174 401-522 (669)
51 2jgd_A 2-oxoglutarate dehydrog 95.5 0.0037 1.3E-07 67.9 1.5 49 385-433 319-379 (933)
52 2xt6_A 2-oxoglutarate decarbox 95.4 0.0042 1.4E-07 68.8 1.7 48 386-433 489-553 (1113)
53 2ozl_B PDHE1-B, pyruvate dehyd 95.4 0.064 2.2E-06 51.6 9.8 114 52-175 62-188 (341)
54 1umd_B E1-beta, 2-OXO acid deh 95.2 0.099 3.4E-06 49.9 10.5 117 52-176 51-178 (324)
55 3kom_A Transketolase; rossmann 95.1 0.19 6.5E-06 52.7 13.1 117 52-173 403-522 (663)
56 2bfd_B 2-oxoisovalerate dehydr 95.0 0.083 2.8E-06 50.8 9.1 118 52-177 67-196 (342)
57 1ik6_A Pyruvate dehydrogenase; 94.4 0.1 3.4E-06 50.8 8.3 155 13-176 50-225 (369)
58 2e6k_A Transketolase; structur 94.4 0.27 9.2E-06 51.5 12.1 117 52-174 397-517 (651)
59 2o1s_A 1-deoxy-D-xylulose-5-ph 94.3 0.59 2E-05 48.7 14.4 151 13-174 318-480 (621)
60 1r9j_A Transketolase; domains, 94.2 0.19 6.5E-06 52.9 10.5 116 52-173 402-521 (673)
61 1gpu_A Transketolase; transfer 94.2 0.21 7.2E-06 52.6 10.7 116 52-173 409-529 (680)
62 3mos_A Transketolase, TK; thia 94.0 1.1 3.6E-05 46.7 15.4 115 52-173 355-473 (616)
63 3l84_A Transketolase; TKT, str 93.8 0.21 7E-06 52.1 9.7 114 53-173 383-500 (632)
64 2o1x_A 1-deoxy-D-xylulose-5-ph 93.8 0.25 8.7E-06 51.5 10.4 150 13-174 321-482 (629)
65 1itz_A Transketolase; calvin c 93.7 0.34 1.2E-05 51.0 11.2 116 52-173 414-534 (675)
66 3m49_A Transketolase; alpha-be 93.1 0.45 1.6E-05 50.0 10.9 116 53-173 428-546 (690)
67 3uk1_A Transketolase; structur 92.8 0.5 1.7E-05 49.9 10.7 115 52-173 448-566 (711)
68 3rim_A Transketolase, TK; TPP, 92.8 0.65 2.2E-05 48.9 11.5 116 53-173 433-553 (700)
69 1pno_A NAD(P) transhydrogenase 92.5 0.066 2.2E-06 44.9 2.8 38 208-245 13-50 (180)
70 1d4o_A NADP(H) transhydrogenas 92.5 0.074 2.5E-06 44.8 3.0 39 207-245 11-49 (184)
71 1djl_A Transhydrogenase DIII; 92.0 0.079 2.7E-06 45.6 2.7 39 207-245 34-72 (207)
72 3ahc_A Phosphoketolase, xylulo 92.0 0.087 3E-06 56.2 3.7 31 386-416 174-204 (845)
73 2fsv_C NAD(P) transhydrogenase 91.9 0.075 2.6E-06 45.6 2.5 39 207-245 35-73 (203)
74 3hww_A 2-succinyl-5-enolpyruvy 91.5 0.21 7.1E-06 51.4 5.9 117 51-173 406-538 (556)
75 1w85_A Pyruvate dehydrogenase 91.1 0.44 1.5E-05 46.2 7.3 113 63-176 147-269 (368)
76 2bru_C NAD(P) transhydrogenase 90.5 0.067 2.3E-06 45.0 0.7 40 206-245 18-57 (186)
77 3eya_A Pyruvate dehydrogenase 90.4 0.59 2E-05 47.8 8.0 118 51-175 396-530 (549)
78 2c31_A Oxalyl-COA decarboxylas 89.2 0.78 2.7E-05 47.1 7.9 105 63-174 431-547 (568)
79 1v5e_A Pyruvate oxidase; oxido 88.4 0.7 2.4E-05 47.7 6.9 110 63-175 418-540 (590)
80 1ozh_A ALS, acetolactate synth 88.4 0.83 2.8E-05 46.9 7.4 104 63-173 425-542 (566)
81 1qs0_A 2-oxoisovalerate dehydr 86.9 0.68 2.3E-05 45.4 5.4 109 65-174 188-307 (407)
82 2pan_A Glyoxylate carboligase; 86.9 1.4 4.8E-05 45.7 8.1 113 60-174 444-580 (616)
83 3lq1_A 2-succinyl-5-enolpyruvy 86.9 0.56 1.9E-05 48.3 5.0 103 64-174 442-560 (578)
84 2q28_A Oxalyl-COA decarboxylas 85.8 2 6.7E-05 44.0 8.4 104 63-173 426-543 (564)
85 2ozl_A PDHE1-A type I, pyruvat 85.5 1.4 4.7E-05 42.6 6.6 105 65-173 147-262 (365)
86 2pgn_A Cyclohexane-1,2-dione h 84.8 0.9 3.1E-05 46.9 5.3 117 51-173 414-546 (589)
87 2uz1_A Benzaldehyde lyase; thi 83.7 2 6.8E-05 44.0 7.3 149 19-173 374-545 (563)
88 2bfd_A 2-oxoisovalerate dehydr 83.6 2.9 9.9E-05 40.8 8.1 107 65-174 169-287 (400)
89 4feg_A Pyruvate oxidase; carba 81.5 3.3 0.00011 42.8 8.0 106 63-173 425-545 (603)
90 1ovm_A Indole-3-pyruvate decar 81.5 2.4 8.2E-05 43.2 6.9 104 63-173 413-531 (552)
91 2iht_A Carboxyethylarginine sy 81.3 1 3.6E-05 46.2 4.1 118 51-174 426-561 (573)
92 1t9b_A Acetolactate synthase, 80.8 3.2 0.00011 43.6 7.7 105 63-174 518-637 (677)
93 2x7j_A 2-succinyl-5-enolpyruvy 78.6 0.71 2.4E-05 47.9 1.8 117 51-173 445-579 (604)
94 2vbi_A Pyruvate decarboxylase; 78.5 1.2 4.2E-05 45.6 3.6 105 63-173 414-532 (566)
95 1q6z_A BFD, BFDC, benzoylforma 78.3 2.6 8.8E-05 42.7 5.9 148 19-173 357-524 (528)
96 2wvg_A PDC, pyruvate decarboxy 76.3 1.8 6.3E-05 44.3 4.1 105 63-173 418-540 (568)
97 1ybh_A Acetolactate synthase, 76.1 4.4 0.00015 41.7 7.0 109 61-175 429-559 (590)
98 1hi9_A Dciaa, dipeptide transp 75.5 0.65 2.2E-05 42.8 0.4 143 16-161 38-204 (274)
99 1umd_A E1-alpha, 2-OXO acid de 74.7 13 0.00043 35.8 9.4 93 81-174 170-269 (367)
100 2vbf_A Branched-chain alpha-ke 74.5 4.6 0.00016 41.3 6.6 105 63-173 430-550 (570)
101 2nxw_A Phenyl-3-pyruvate decar 72.0 3.7 0.00013 42.0 5.1 104 63-173 427-541 (565)
102 2vk8_A Pyruvate decarboxylase 65.8 6.2 0.00021 40.2 5.3 104 64-173 419-541 (563)
103 3trj_A Phosphoheptose isomeras 65.6 42 0.0014 28.9 10.0 100 15-114 34-153 (201)
104 3nbm_A PTS system, lactose-spe 63.1 7.5 0.00026 30.2 4.1 57 218-287 6-62 (108)
105 1tk9_A Phosphoheptose isomeras 62.1 29 0.001 29.1 8.2 97 16-112 31-147 (188)
106 3glr_A NAD-dependent deacetyla 61.6 5.1 0.00017 37.1 3.3 39 272-310 192-230 (285)
107 1e2b_A Enzyme IIB-cellobiose; 60.4 4.4 0.00015 31.4 2.3 58 219-289 4-61 (106)
108 1tvm_A PTS system, galactitol- 53.9 12 0.0004 29.3 3.8 31 219-249 22-53 (113)
109 3sho_A Transcriptional regulat 53.5 64 0.0022 26.9 8.9 93 16-114 28-126 (187)
110 2yva_A DNAA initiator-associat 53.3 61 0.0021 27.3 8.8 99 15-114 29-148 (196)
111 3rot_A ABC sugar transporter, 52.9 1.3E+02 0.0043 26.9 12.4 151 14-178 113-281 (297)
112 4au1_A Precorrin-8X methylmuta 52.8 21 0.00072 31.6 5.5 56 202-257 155-212 (229)
113 2qtc_A Pyruvate dehydrogenase 52.7 33 0.0011 37.0 8.1 116 52-173 562-692 (886)
114 3fxa_A SIS domain protein; str 50.7 21 0.00073 30.5 5.4 71 204-285 30-100 (201)
115 2k53_A A3DK08 protein; NESG, C 50.3 9.8 0.00034 27.5 2.5 56 11-67 4-65 (76)
116 2hjh_A NAD-dependent histone d 50.2 4.4 0.00015 38.8 0.8 40 271-310 249-288 (354)
117 2xbl_A Phosphoheptose isomeras 49.7 52 0.0018 27.7 7.8 98 16-113 37-154 (198)
118 1vim_A Hypothetical protein AF 49.0 36 0.0012 29.1 6.6 65 204-285 33-97 (200)
119 1o97_D Electron transferring f 48.6 13 0.00043 35.1 3.7 69 215-287 199-269 (320)
120 4iao_A NAD-dependent histone d 48.3 4.6 0.00016 40.2 0.6 40 271-310 387-426 (492)
121 3ff4_A Uncharacterized protein 48.1 25 0.00086 27.8 4.9 38 19-56 73-110 (122)
122 1efv_A Electron transfer flavo 47.6 16 0.00053 34.3 4.2 52 215-269 194-247 (315)
123 1x92_A APC5045, phosphoheptose 46.8 43 0.0015 28.4 6.8 96 16-113 34-151 (199)
124 2xzm_B RPS0E; ribosome, transl 46.7 72 0.0025 28.5 8.2 72 207-289 52-126 (241)
125 3iz6_A 40S ribosomal protein S 46.4 97 0.0033 28.6 9.1 72 207-289 61-134 (305)
126 3e7d_A COBH, precorrin-8X meth 46.3 41 0.0014 29.4 6.3 55 203-257 139-195 (212)
127 1efp_A ETF, protein (electron 46.3 16 0.00054 34.2 4.0 48 215-263 189-238 (307)
128 3ahc_A Phosphoketolase, xylulo 45.4 1E+02 0.0034 33.0 10.3 114 53-172 492-625 (845)
129 3u5c_A 40S ribosomal protein S 44.6 71 0.0024 28.7 7.8 72 207-289 56-129 (252)
130 4gnr_A ABC transporter substra 44.3 53 0.0018 30.4 7.5 61 205-267 60-120 (353)
131 3i9v_3 NADH-quinone oxidoreduc 43.6 38 0.0013 36.0 7.0 79 205-289 323-403 (783)
132 1j8f_A SIRT2, sirtuin 2, isofo 43.4 9.2 0.00031 36.1 1.9 22 271-292 214-235 (323)
133 2xt6_A 2-oxoglutarate decarbox 41.5 46 0.0016 36.9 7.3 96 76-172 521-627 (1113)
134 1m3s_A Hypothetical protein YC 41.4 47 0.0016 27.8 6.0 66 203-285 22-87 (186)
135 2k5e_A Uncharacterized protein 41.3 7.8 0.00027 27.8 0.8 50 12-62 7-62 (73)
136 2l2q_A PTS system, cellobiose- 41.1 28 0.00096 26.7 4.1 31 220-250 6-36 (109)
137 1vi6_A 30S ribosomal protein S 40.5 1.1E+02 0.0036 26.7 8.1 71 207-288 55-126 (208)
138 1ma3_A SIR2-AF2, transcription 40.3 18 0.00062 32.7 3.3 27 206-232 3-29 (253)
139 2ioj_A Hypothetical protein AF 40.3 22 0.00074 28.6 3.5 33 219-254 74-106 (139)
140 2keg_A PLNK; protein, peptide, 39.5 13 0.00044 20.9 1.3 14 387-400 6-19 (32)
141 2yic_A 2-oxoglutarate decarbox 39.3 72 0.0025 34.3 8.2 97 76-173 276-383 (868)
142 2iv2_X Formate dehydrogenase H 39.2 31 0.0011 36.1 5.4 84 205-288 81-177 (715)
143 3pki_A NAD-dependent deacetyla 38.6 11 0.00038 35.9 1.6 40 271-310 200-240 (355)
144 3dm5_A SRP54, signal recogniti 38.6 58 0.002 32.0 6.8 49 206-254 115-163 (443)
145 3bch_A 40S ribosomal protein S 38.1 1.6E+02 0.0054 26.5 9.0 72 207-289 90-163 (253)
146 4f06_A Extracellular ligand-bi 37.7 27 0.00093 32.9 4.3 61 205-267 57-117 (371)
147 2xhz_A KDSD, YRBH, arabinose 5 37.5 1.2E+02 0.0041 25.0 8.0 95 16-114 37-135 (183)
148 1q14_A HST2 protein; histone d 36.8 13 0.00044 35.6 1.8 53 258-310 187-252 (361)
149 1j8m_F SRP54, signal recogniti 35.5 1E+02 0.0035 28.2 7.8 48 205-252 112-159 (297)
150 3sho_A Transcriptional regulat 35.3 64 0.0022 26.9 5.9 72 203-285 24-95 (187)
151 1q1a_A HST2 protein; ternary c 35.2 8.6 0.00029 35.6 0.2 37 274-310 208-244 (289)
152 2d59_A Hypothetical protein PH 35.2 65 0.0022 25.9 5.7 42 15-56 88-129 (144)
153 3td9_A Branched chain amino ac 35.0 70 0.0024 29.6 6.8 61 205-267 66-126 (366)
154 2xhz_A KDSD, YRBH, arabinose 5 34.5 41 0.0014 28.0 4.5 70 204-285 35-104 (183)
155 2zkq_b 40S ribosomal protein S 34.4 1.8E+02 0.006 26.8 8.9 72 207-289 57-130 (295)
156 4fyk_A Deoxyribonucleoside 5'- 34.3 1.4E+02 0.0047 24.6 7.4 18 15-34 19-36 (152)
157 2duw_A Putative COA-binding pr 34.1 64 0.0022 26.1 5.5 42 15-56 81-122 (145)
158 1jeo_A MJ1247, hypothetical pr 33.2 1.1E+02 0.0036 25.3 7.0 89 17-114 30-121 (180)
159 3kl4_A SRP54, signal recogniti 33.0 77 0.0026 31.0 6.7 49 206-254 112-160 (433)
160 2zxr_A Single-stranded DNA spe 32.9 61 0.0021 33.7 6.2 82 205-290 59-141 (666)
161 3v7e_A Ribosome-associated pro 32.4 65 0.0022 23.3 4.7 45 208-253 16-60 (82)
162 3j20_B 30S ribosomal protein S 32.1 1.9E+02 0.0065 24.9 8.3 71 207-288 51-122 (202)
163 3k35_A NAD-dependent deacetyla 32.0 41 0.0014 31.5 4.3 27 205-231 31-57 (318)
164 3gyb_A Transcriptional regulat 31.9 2.5E+02 0.0087 24.4 11.4 86 14-99 103-199 (280)
165 3cpq_A 50S ribosomal protein L 31.7 1E+02 0.0035 23.6 6.0 44 208-252 26-69 (110)
166 3trh_A Phosphoribosylaminoimid 31.4 90 0.0031 26.2 5.8 78 9-110 14-92 (169)
167 2jgd_A 2-oxoglutarate dehydrog 31.4 2.5E+02 0.0085 30.4 10.8 119 52-178 652-785 (933)
168 1i1q_B Anthranilate synthase c 31.3 1.1E+02 0.0037 25.7 6.8 73 35-109 8-83 (192)
169 3bfj_A 1,3-propanediol oxidore 31.2 56 0.0019 31.2 5.4 64 218-286 33-101 (387)
170 3n0w_A ABC branched chain amin 31.0 97 0.0033 28.8 7.0 61 205-267 58-120 (379)
171 3gbv_A Putative LACI-family tr 30.9 2.7E+02 0.0093 24.4 11.0 150 14-178 118-289 (304)
172 4a3s_A 6-phosphofructokinase; 30.8 67 0.0023 30.0 5.6 42 15-56 80-121 (319)
173 3pki_A NAD-dependent deacetyla 30.5 44 0.0015 31.8 4.2 27 205-231 31-57 (355)
174 1iuk_A Hypothetical protein TT 30.1 53 0.0018 26.4 4.3 41 16-56 82-122 (140)
175 3etn_A Putative phosphosugar i 30.1 70 0.0024 27.8 5.4 70 204-284 40-113 (220)
176 2hjh_A NAD-dependent histone d 30.0 36 0.0012 32.4 3.7 27 206-232 34-60 (354)
177 1ofu_A FTSZ, cell division pro 29.6 20 0.00069 33.7 1.7 77 206-285 84-165 (320)
178 1m3s_A Hypothetical protein YC 29.4 1.3E+02 0.0045 24.8 7.0 89 16-113 26-117 (186)
179 1rrm_A Lactaldehyde reductase; 29.4 31 0.001 33.1 3.1 65 217-286 30-97 (386)
180 2r48_A Phosphotransferase syst 29.1 60 0.002 25.0 4.1 65 232-310 19-83 (106)
181 2i2w_A Phosphoheptose isomeras 29.0 1.6E+02 0.0056 25.0 7.6 35 79-113 134-169 (212)
182 1xmp_A PURE, phosphoribosylami 29.0 86 0.0029 26.3 5.3 79 9-111 19-98 (170)
183 3hh1_A Tetrapyrrole methylase 29.0 1.1E+02 0.0036 23.6 5.8 46 206-251 67-113 (117)
184 2f62_A Nucleoside 2-deoxyribos 28.9 1.6E+02 0.0055 24.3 7.1 67 14-82 26-105 (161)
185 2lbw_A H/ACA ribonucleoprotein 28.8 1.7E+02 0.0057 22.8 6.9 46 208-253 25-70 (121)
186 3n0x_A Possible substrate bind 28.8 91 0.0031 29.1 6.4 49 205-255 58-106 (374)
187 2f62_A Nucleoside 2-deoxyribos 28.6 71 0.0024 26.5 4.9 59 219-285 9-75 (161)
188 1m2k_A Silent information regu 28.4 39 0.0013 30.3 3.4 23 209-231 3-25 (249)
189 2xzm_U Ribosomal protein L7AE 28.3 1.4E+02 0.0047 23.6 6.3 46 208-253 29-74 (126)
190 3k35_A NAD-dependent deacetyla 28.2 31 0.0011 32.3 2.8 40 271-310 200-240 (318)
191 1y81_A Conserved hypothetical 28.2 87 0.003 25.0 5.2 41 16-56 81-121 (138)
192 3j21_Z 50S ribosomal protein L 28.2 1.5E+02 0.0051 22.1 6.3 44 208-252 20-63 (99)
193 1o4v_A Phosphoribosylaminoimid 28.0 84 0.0029 26.7 5.1 79 9-111 21-100 (183)
194 1pfk_A Phosphofructokinase; tr 27.8 63 0.0022 30.2 4.8 42 15-56 81-122 (320)
195 1yc5_A NAD-dependent deacetyla 27.6 27 0.00093 31.3 2.2 25 208-232 3-27 (246)
196 3fxa_A SIS domain protein; str 27.5 98 0.0033 26.1 5.8 95 16-114 33-131 (201)
197 1zxx_A 6-phosphofructokinase; 27.4 65 0.0022 30.1 4.8 42 15-56 80-121 (319)
198 4eyg_A Twin-arginine transloca 27.4 83 0.0028 29.0 5.8 60 205-266 57-116 (368)
199 1u11_A PURE (N5-carboxyaminoim 27.4 1E+02 0.0035 26.1 5.6 78 10-111 30-108 (182)
200 3kkq_A RAS-related protein M-R 27.3 90 0.0031 25.3 5.5 44 209-252 113-160 (183)
201 3ox4_A Alcohol dehydrogenase 2 27.3 19 0.00064 34.8 1.1 75 207-286 18-97 (383)
202 1vlj_A NADH-dependent butanol 27.3 62 0.0021 31.3 4.9 71 208-285 31-109 (407)
203 1vim_A Hypothetical protein AF 27.2 1.3E+02 0.0044 25.5 6.5 90 16-114 36-128 (200)
204 1w41_A 50S ribosomal protein L 27.2 1.4E+02 0.0048 22.3 6.0 43 208-251 21-63 (101)
205 2hy5_A Putative sulfurtransfer 27.0 95 0.0032 24.4 5.2 79 208-286 21-130 (130)
206 2ffh_A Protein (FFH); SRP54, s 27.0 1.6E+02 0.0053 28.7 7.7 47 207-253 114-160 (425)
207 1q1a_A HST2 protein; ternary c 27.0 41 0.0014 30.9 3.4 27 205-231 5-33 (289)
208 2r4q_A Phosphotransferase syst 26.9 60 0.0021 25.0 3.7 66 231-310 18-83 (106)
209 3g85_A Transcriptional regulat 26.4 3.2E+02 0.011 23.8 9.9 85 14-98 112-210 (289)
210 3v2d_S 50S ribosomal protein L 26.1 75 0.0026 24.7 4.2 41 14-54 67-112 (112)
211 3czc_A RMPB; alpha/beta sandwi 26.1 28 0.00095 26.9 1.7 30 219-248 19-49 (110)
212 3hut_A Putative branched-chain 26.0 1.5E+02 0.0051 27.1 7.3 47 206-254 58-104 (358)
213 1vkm_A Conserved hypothetical 25.9 95 0.0033 28.4 5.4 41 212-252 141-181 (297)
214 2yva_A DNAA initiator-associat 25.6 62 0.0021 27.3 4.1 24 206-230 29-52 (196)
215 4ex8_A ALNA; alpha/beta/alpha- 25.5 81 0.0028 29.2 4.9 44 209-252 148-191 (316)
216 3u31_A SIR2A, transcriptional 25.2 41 0.0014 31.0 3.0 29 203-231 30-58 (290)
217 3riy_A NAD-dependent deacetyla 24.9 36 0.0012 31.1 2.5 25 207-231 10-34 (273)
218 2afr_A Cobalamin biosynthesis 24.7 1.6E+02 0.0053 26.1 6.5 55 203-257 141-201 (231)
219 3r8s_O 50S ribosomal protein L 24.6 67 0.0023 25.1 3.7 41 14-54 71-116 (116)
220 3riy_A NAD-dependent deacetyla 24.1 34 0.0012 31.2 2.2 21 271-291 206-226 (273)
221 3dzc_A UDP-N-acetylglucosamine 24.0 2.8E+02 0.0096 26.2 9.0 88 20-110 44-143 (396)
222 3i09_A Periplasmic branched-ch 23.9 1.2E+02 0.0041 28.1 6.2 47 207-255 58-104 (375)
223 2yv5_A YJEQ protein; hydrolase 23.9 4E+02 0.014 24.0 10.3 51 204-254 95-150 (302)
224 4gim_A Pseudouridine-5'-phosph 23.8 60 0.0021 30.3 3.7 44 209-252 168-211 (335)
225 3brs_A Periplasmic binding pro 23.7 3.6E+02 0.012 23.4 12.9 96 14-109 114-224 (289)
226 3u31_A SIR2A, transcriptional 23.1 36 0.0012 31.4 2.1 19 272-290 211-229 (290)
227 3con_A GTPase NRAS; structural 23.0 1.6E+02 0.0056 23.8 6.4 37 218-254 125-164 (190)
228 2zjr_L 50S ribosomal protein L 23.0 64 0.0022 25.2 3.2 41 14-54 69-114 (114)
229 4iao_A NAD-dependent histone d 23.0 58 0.002 32.3 3.7 26 206-231 172-197 (492)
230 3on1_A BH2414 protein; structu 22.8 1.9E+02 0.0067 21.5 6.1 44 208-252 23-66 (101)
231 2ce2_X GTPase HRAS; signaling 22.8 1.6E+02 0.0055 22.9 6.1 37 218-254 107-146 (166)
232 3l49_A ABC sugar (ribose) tran 22.7 3.8E+02 0.013 23.3 12.9 88 14-101 108-216 (291)
233 2qu7_A Putative transcriptiona 22.5 3.8E+02 0.013 23.3 11.2 83 14-97 107-208 (288)
234 1ivn_A Thioesterase I; hydrola 22.5 1.6E+02 0.0055 24.1 6.2 47 206-252 86-139 (190)
235 3jvd_A Transcriptional regulat 22.5 4.3E+02 0.015 23.8 10.8 85 14-98 159-253 (333)
236 2q0q_A ARYL esterase; SGNH hyd 22.4 2.2E+02 0.0074 23.6 7.1 64 206-269 109-201 (216)
237 1ls1_A Signal recognition part 22.4 2.3E+02 0.0079 25.7 7.7 71 207-283 114-186 (295)
238 3mfq_A TROA, high-affinity zin 22.3 1.4E+02 0.0047 27.2 6.0 50 201-251 194-243 (282)
239 2zay_A Response regulator rece 22.2 2.6E+02 0.009 21.2 7.4 102 44-159 25-130 (147)
240 2nap_A Protein (periplasmic ni 22.0 1.7E+02 0.0058 30.4 7.4 75 205-288 82-177 (723)
241 3t5g_A GTP-binding protein RHE 21.7 1.1E+02 0.0036 24.8 4.8 40 213-252 105-148 (181)
242 2bdq_A Copper homeostasis prot 21.7 1.4E+02 0.0046 26.3 5.5 44 204-251 161-205 (224)
243 3qbe_A 3-dehydroquinate syntha 21.6 71 0.0024 30.5 4.0 41 208-250 33-73 (368)
244 3hyn_A Putative signal transdu 21.5 28 0.00096 29.7 1.0 32 406-437 81-115 (189)
245 1jeo_A MJ1247, hypothetical pr 21.5 90 0.0031 25.8 4.3 47 204-252 26-72 (180)
246 3v7q_A Probable ribosomal prot 21.3 2.1E+02 0.0072 21.3 6.0 44 208-252 24-67 (101)
247 3lop_A Substrate binding perip 21.3 1.5E+02 0.005 27.3 6.2 46 208-255 61-108 (364)
248 1knx_A Probable HPR(Ser) kinas 21.3 51 0.0017 30.7 2.8 48 205-255 69-116 (312)
249 3k9c_A Transcriptional regulat 21.0 4.2E+02 0.014 23.1 13.4 85 14-98 111-207 (289)
250 3cnb_A DNA-binding response re 20.9 2.7E+02 0.0092 20.9 8.1 63 46-113 27-95 (143)
251 1kao_A RAP2A; GTP-binding prot 20.7 1.3E+02 0.0046 23.5 5.1 43 210-252 99-145 (167)
252 2ale_A SNU13, NHP2/L7AE family 20.6 1.3E+02 0.0045 24.0 4.8 45 208-252 37-81 (134)
253 3ors_A N5-carboxyaminoimidazol 20.5 1.6E+02 0.0055 24.5 5.4 78 9-110 11-89 (163)
254 3bzy_B ESCU; auto cleavage pro 20.4 81 0.0028 23.0 3.2 32 219-253 16-47 (83)
255 1w5f_A Cell division protein F 20.3 32 0.0011 32.8 1.2 78 206-286 94-176 (353)
256 4grd_A N5-CAIR mutase, phospho 20.1 1.2E+02 0.004 25.5 4.5 78 9-110 20-98 (173)
257 2vaw_A FTSZ, cell division pro 20.1 39 0.0013 32.7 1.8 77 206-286 84-166 (394)
No 1
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=5.5e-83 Score=669.82 Aligned_cols=419 Identities=43% Similarity=0.753 Sum_probs=354.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
..|+++++|++.|+++||+||||+||+++++|++++.+++|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 6 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~ 85 (564)
T 2q28_A 6 QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG 85 (564)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred ccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHH
Confidence 44799999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCC--CCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
++||++||.+++|||+|+|++++...+ ++.+|++||..+++++|||++++++++++++.+++||+.|.++|||||||+
T Consensus 86 ~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 165 (564)
T 2q28_A 86 LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLD 165 (564)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999998777 789999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++.... ..+.. + ...+...+.+++..+++++++|++|+||+|++|+|+.++++.+++++|||++|+||
T Consensus 166 iP~dv~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv 242 (564)
T 2q28_A 166 LPANVLAATMEKDEA-LTTIV-K-VENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPF 242 (564)
T ss_dssp EEHHHHHCEEEHHHH-HHTCC-C-CSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred cCHHHhhcccccccc-ccccc-c-ccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCE
Confidence 999998776543200 00000 0 00111122456788999999999999999999999988889999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------------
Q 013746 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------------- 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------------- 310 (437)
++|++|||.+|++||+++|...++++++||+||.||+++++..+++. ..|.++.++||||
T Consensus 243 ~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 321 (564)
T 2q28_A 243 LPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVPVVGD 321 (564)
T ss_dssp EECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEEEESC
T ss_pred EeccCccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeEEEcC
Confidence 99999999999999999998888889999999999999987655454 4566678999987
Q ss_pred ------hHHhhhhh----hHHHHHH-----------HH----hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchHH
Q 013746 311 ------AIWKKTKD----NVLKMEV-----------QL----AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 365 (437)
Q Consensus 311 ------~l~~~~~~----~~~~~~~-----------~~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~ 365 (437)
+|.+.+.. ....|.. .. .....++++.++++.|++.++ .|++.++++||++.+
T Consensus 322 ~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~d~ivv~dg~~~~ 399 (564)
T 2q28_A 322 IASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGANTL 399 (564)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHT--TCTTCEEEEESSHHH
T ss_pred HHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhc--CCCCEEEEECCchHH
Confidence 12121111 0011110 00 112345666677777776663 156788888999888
Q ss_pred HHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|+.+.++....|++++.++++|+||+++|+|+|++++ |+++||+++|||||+|++|||+|++||++|++.|
T Consensus 400 ~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv 470 (564)
T 2q28_A 400 DNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIV 470 (564)
T ss_dssp HHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred HHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 8877767778889999999999999999999999999 8999999999999999999999999999998754
No 2
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=8.6e-83 Score=668.66 Aligned_cols=420 Identities=42% Similarity=0.754 Sum_probs=355.9
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
..|+++++|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 8 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~ 87 (568)
T 2c31_A 8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNG 87 (568)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCC--CCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEE
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 169 (437)
++||++||.+++|||+|+|+++....+ ++.+|++||..+++++|||++++++++++++.+++||+.|.++|||||||+
T Consensus 88 ~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (568)
T 2c31_A 88 VTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVD 167 (568)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEEe
Confidence 999999999999999999999998877 689999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
||.|++.++++..... .+.. ....+...+.++++.+++++++|++|+||+|++|+|+.++++.+++++|||++|+||
T Consensus 168 iP~dv~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv 244 (568)
T 2c31_A 168 LPAKLFGQTISVEEAN-KLLF--KPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF 244 (568)
T ss_dssp EETHHHHCEEEHHHHH-HHCC--CCSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred CCHHHhhccccccccc-cccc--cccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCE
Confidence 9999987665432100 0000 000112234567788999999999999999999999988889999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCC-CCceEEEhH------------------
Q 013746 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVD------------------ 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~~i~vd------------------ 310 (437)
++|++|||.+|++||+++|...++++++||+||.||+++++..++++...|. ++.++||||
T Consensus 245 ~~t~~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~ 324 (568)
T 2c31_A 245 LPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVG 324 (568)
T ss_dssp EECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEES
T ss_pred EecccccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeC
Confidence 9999999999999999999888888999999999999998766555444565 677999987
Q ss_pred -------hHHhhhhhh---HHHHHH-----------HHh----cc--CCCCCcccHHHHHHHHHhccCCCCCEEEeCcch
Q 013746 311 -------AIWKKTKDN---VLKMEV-----------QLA----KD--VVPFNFMTPMRIIRDAILGVGSPAPILVSEGAN 363 (437)
Q Consensus 311 -------~l~~~~~~~---~~~~~~-----------~~~----~~--~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~ 363 (437)
+|.+.+... ...|.. ... .. ..++++.++++.|++.++. +++.+++.||++
T Consensus 325 d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~iv~~dg~~ 402 (568)
T 2c31_A 325 DIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLA--NPDISLVNEGAN 402 (568)
T ss_dssp CHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHH--CCSSEEEEESSH
T ss_pred CHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcC--CCCeEEEECChh
Confidence 111211110 001110 000 11 3456666777777666531 567888999998
Q ss_pred HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 364 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..++.+.++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|++|||+|++||++|++.|
T Consensus 403 ~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv 475 (568)
T 2c31_A 403 ALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVTVI 475 (568)
T ss_dssp HHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 888877766778899999999999999999999999999 8999999999999999999999999999998754
No 3
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=7.7e-81 Score=657.32 Aligned_cols=413 Identities=23% Similarity=0.375 Sum_probs=348.6
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh--CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
.+++|+++++|++.|+++||+||||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 7 ~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG 86 (603)
T 4feg_A 7 KQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPG 86 (603)
T ss_dssp --CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHH
T ss_pred CcCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCch
Confidence 4567899999999999999999999999999999999986 47999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeE
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~ 167 (437)
++|+++||++||.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++.+++||+.|.+ ++||||
T Consensus 87 ~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~ 165 (603)
T 4feg_A 87 GTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAV 165 (603)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 569999
Q ss_pred EEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCC
Q 013746 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (437)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~ 247 (437)
|+||.|++..+++......... .......+.+++..+++++++|++||||+|++|+|+ .++.+++++|+|++|+
T Consensus 166 l~iP~dv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~~~ 239 (603)
T 4feg_A 166 VQIPVDLPWQQIPAEDWYASAN----SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKI 239 (603)
T ss_dssp EEEETTGGGSEEETTTCCCCGG----GCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHHTC
T ss_pred EEeChhhhhccCCccccccccc----ccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHHCC
Confidence 9999999988765431100000 011123455678899999999999999999999998 4788999999999999
Q ss_pred CeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH----------
Q 013746 248 PFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD---------- 310 (437)
Q Consensus 248 pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd---------- 310 (437)
||++|++|||.||++||+++|. ..++++++||+||.||+++++.. +...|.++.++||||
T Consensus 240 PV~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~---~~~~~~~~~~~i~id~d~~~~~~~~ 316 (603)
T 4feg_A 240 PLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAE---VSKAFKNTRYFLQIDIDPAKLGKRH 316 (603)
T ss_dssp CEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTTT---TTTTTTTCSEEEEEESCGGGTTSSS
T ss_pred CEEEcCccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCccc---ccccCCCCCeEEEEeCCHHHhCCcc
Confidence 9999999999999999999984 35678899999999999998532 222355678999997
Q ss_pred ---------------hHHhhhhh-----hH-------HHHHHHH----hccCCCCCcccHHHHHHHHHhccCCCCCEEEe
Q 013746 311 ---------------AIWKKTKD-----NV-------LKMEVQL----AKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 359 (437)
Q Consensus 311 ---------------~l~~~~~~-----~~-------~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~ 359 (437)
+|.+.+.. .. ..+.... .....++++.++++.|.+.+ +++++++.
T Consensus 317 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv~ 392 (603)
T 4feg_A 317 KTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIA----EPDAIYSI 392 (603)
T ss_dssp CCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHC----CTTCEEEE
T ss_pred CCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhC----CCCCEEEE
Confidence 11111110 00 1111111 12345677777777777665 89999988
Q ss_pred C-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 360 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 360 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
| |.+..|..++ +....+++++.++++|+||+++|+|+|++++.|+++||+++|||||+|+++||+|++++++|++.|
T Consensus 393 d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~v 470 (603)
T 4feg_A 393 DVGDINLNANRH-LKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINV 470 (603)
T ss_dssp CSSHHHHHHHHH-CCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred CCchHHHHHHHh-ceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEE
Confidence 8 6666677664 577788999999999999999999999999999999999999999999999999999999998754
No 4
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=1.9e-81 Score=655.63 Aligned_cols=406 Identities=20% Similarity=0.283 Sum_probs=343.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
|++|++|+|++.|+++||+||||+||+++++|++++.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N 80 (549)
T 3eya_A 1 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH 80 (549)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhh
Confidence 468999999999999999999999999999999999865 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+++....+++.+|++||..+++++|||++++++++++++.+++|++.|.++ +|||||+|
T Consensus 81 ~~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~i 159 (549)
T 3eya_A 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVL 159 (549)
T ss_dssp THHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEE
T ss_pred hHHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 59999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++..+++....... .....+...++++.+++++++|++||||+|++|.|+. ++.+++++|+|++|+||+
T Consensus 160 P~dv~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~~Pv~ 231 (549)
T 3eya_A 160 PGDVALKPAPEGATMHW------YHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIKAPIV 231 (549)
T ss_dssp EHHHHTSBCCTTCCCCC------CCCCCCEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHTCCEE
T ss_pred ChhHhhcccCccccccc------cccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhCCCEE
Confidence 99999888754311000 0011122345688899999999999999999999983 678999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-------------
Q 013746 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------- 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------- 310 (437)
+|++|||.||++||+++|. ..++++++||+||.+|+++++.. .+.++.++||||
T Consensus 232 ~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~~~~~~~~~ 305 (549)
T 3eya_A 232 HALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA------FYPTDAKIIQIDINPASIGAHSKVD 305 (549)
T ss_dssp ECGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG------GSCSSSEEEEEESCGGGTTSSSCCS
T ss_pred ECCccCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc------cCCCCCeEEEEeCCHHHhCCCCCCC
Confidence 9999999999999999984 35678899999999999987542 134567899987
Q ss_pred ------------hHHhhhhh-----hHHHH-------HHHHh----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-c
Q 013746 311 ------------AIWKKTKD-----NVLKM-------EVQLA----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-G 361 (437)
Q Consensus 311 ------------~l~~~~~~-----~~~~~-------~~~~~----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g 361 (437)
+|.+.+.. ....+ ..... ....++++.++++.|.+.+ +++++++.| |
T Consensus 306 ~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ivv~d~G 381 (549)
T 3eya_A 306 MALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFA----ADDAIFTCDVG 381 (549)
T ss_dssp EEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHS----CTTCEEEECTT
T ss_pred eEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhC----CCCCEEEEcCc
Confidence 11111110 00111 11111 1134566666777776665 899999888 6
Q ss_pred chHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 362 ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.+..|..+ +++...+++++.++++|+||+++|+|+|+++++|+++||+++|||||+|++|||+|++++++|++.|
T Consensus 382 ~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 456 (549)
T 3eya_A 382 TPTVWAAR-YLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIV 456 (549)
T ss_dssp HHHHHHHH-HCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred HHHHHHHH-hCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 66666665 4577789999999999999999999999999999999999999999999999999999999998654
No 5
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=1.6e-80 Score=653.98 Aligned_cols=413 Identities=25% Similarity=0.404 Sum_probs=344.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..|+++++|++.|+++||++|||+||+++++|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 89 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHH
Confidence 347999999999999999999999999999999999764 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+++....+++.+|++||..+++++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 90 ~~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~i 169 (590)
T 1ybh_A 90 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDV 169 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHH--HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCC
Q 013746 171 PTDVLHQTISVSEA--EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (437)
Q Consensus 171 P~dv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~p 248 (437)
|.|++..+++.... ...+. ..+...+.++++.+++++++|.+|+||+|++|+|+.+++ +++++|||++|+|
T Consensus 170 P~dv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~~~~P 242 (590)
T 1ybh_A 170 PKDIQQQLAIPNWEQAMRLPG-----YMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVELTGIP 242 (590)
T ss_dssp EHHHHHCEECCCTTCCCCCHH-----HHHHSCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHHHCCC
T ss_pred Ccchhhhhccccccccccccc-----CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHHhCCC
Confidence 99998775531100 00000 001122334678899999999999999999999998766 9999999999999
Q ss_pred eeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-----------
Q 013746 249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----------- 310 (437)
Q Consensus 249 v~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----------- 310 (437)
|++|++|||.+|++||+++|. ..+.++++||+||.||+++++..+ +++..|.++.++||||
T Consensus 243 v~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~ 321 (590)
T 1ybh_A 243 VASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKT 321 (590)
T ss_dssp EEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHHH-SSGGGTTTTSEEEEEESCTTTTTSSSC
T ss_pred EEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCcccc-CcccccCCCCeEEEEECCHHHhCCCcC
Confidence 999999999999999999884 356788999999999999976543 4444455677899987
Q ss_pred --------------hHHhhhhhh-------HHHHHHHH----hc-------cCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 --------------AIWKKTKDN-------VLKMEVQL----AK-------DVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 --------------~l~~~~~~~-------~~~~~~~~----~~-------~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
+|.+.+... ...|.... .. ...++++.++++.|.+.+ +++++++
T Consensus 322 ~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----p~~~ivv 397 (590)
T 1ybh_A 322 PHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELT----DGKAIIS 397 (590)
T ss_dssp CSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCCCCCTTBCCHHHHHHHHHHHT----TTCCEEE
T ss_pred CCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhhcccccCCcCHHHHHHHHHHhC----CCCCEEE
Confidence 121222110 01121111 00 112355556666666655 8899999
Q ss_pred eC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 359 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 359 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.| |.+..|..+ +++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|++++++|++.|
T Consensus 398 ~d~G~~~~~~~~-~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 476 (590)
T 1ybh_A 398 TGVGQHQMWAAQ-FYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVL 476 (590)
T ss_dssp ECSSHHHHHHHH-SCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEEE
T ss_pred EcCcHHHHHHHH-hcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCcEEE
Confidence 88 444455544 5677889999999999999999999999999999999999999999999999999999999997653
No 6
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=3.7e-80 Score=656.96 Aligned_cols=422 Identities=24% Similarity=0.376 Sum_probs=340.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.|+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 81 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~ 160 (677)
T 1t9b_A 81 GLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNV 160 (677)
T ss_dssp TCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHH
Confidence 4799999999999999999999999999999999975 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|++++...+++.||++||..+++++|||++++++++++++.+++||+.|.++|||||||+||
T Consensus 161 ~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 161 VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHH--HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCcc-chHHHHHHHHHHhCCC
Q 013746 172 TDVLHQTISVSEAE--KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVESTGIP 248 (437)
Q Consensus 172 ~dv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~-~~~~~l~~lae~~g~p 248 (437)
.|++.++++.+... ..+..............+++..+++++++|++|+||+|++|+|+.++ .+.+++++|||++|+|
T Consensus 241 ~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~P 320 (677)
T 1t9b_A 241 KDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIP 320 (677)
T ss_dssp HHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCC
T ss_pred HHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCC
Confidence 99988765422100 01000000000001112335679999999999999999999999766 4679999999999999
Q ss_pred eeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCce---------EEEhH--
Q 013746 249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK---------FVLVD-- 310 (437)
Q Consensus 249 v~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~---------~i~vd-- 310 (437)
|++|++|||.||++||+++|. ..+.++++||+||.||+++++..+ +....|.++.+ +||||
T Consensus 321 V~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t-~~~~~~~~~~~~~~~~~~~~iI~idid 399 (677)
T 1t9b_A 321 VTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVT-GNISKFAPEARRAAAEGRGGIIHFEVS 399 (677)
T ss_dssp EEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTS-CSGGGSSHHHHHHHHTTSCEEEEEESC
T ss_pred eeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcccc-cCccccCcccccccccCCceEEEEECC
Confidence 999999999999999998773 356778999999999999987543 33334544455 88887
Q ss_pred -----------------------hHHhhhhh--hHHHHH----HHHh--c-------cCCCCCcccHHHHHHHHHhccCC
Q 013746 311 -----------------------AIWKKTKD--NVLKME----VQLA--K-------DVVPFNFMTPMRIIRDAILGVGS 352 (437)
Q Consensus 311 -----------------------~l~~~~~~--~~~~~~----~~~~--~-------~~~~~~~~~~~~~i~~~l~~~~~ 352 (437)
+|.+.+.. ....|. .... . ...++++.++++.|.+.+... +
T Consensus 400 ~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~l~~~-~ 478 (677)
T 1t9b_A 400 PKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDT-G 478 (677)
T ss_dssp GGGSSSSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHSCCCCCCCCTTCCBCHHHHHHHHHHHHHTT-C
T ss_pred HHHhCCcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhcccccccccCCCCcCHHHHHHHHHHHhhcC-C
Confidence 11111111 001111 1110 0 012345556677777766221 3
Q ss_pred CCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcC
Q 013746 353 PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 431 (437)
Q Consensus 353 ~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~ 431 (437)
++.+++.+ |.+.+|..+ +++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|+++++
T Consensus 479 ~~~iv~~~vg~~~~~~~~-~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~eL~ta~~~~ 557 (677)
T 1t9b_A 479 RHVIVTTGVGQHQMWAAQ-HWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAG 557 (677)
T ss_dssp SCEEEEECSSHHHHHHHH-HSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHHT
T ss_pred CCEEEEeCCchHHHHHHH-hcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHHHHHHHHhC
Confidence 44566666 556666665 4577889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 013746 432 IMISSI 437 (437)
Q Consensus 432 l~i~~i 437 (437)
+|++.|
T Consensus 558 l~v~iv 563 (677)
T 1t9b_A 558 TPVKIL 563 (677)
T ss_dssp CCCEEE
T ss_pred CCeEEE
Confidence 998654
No 7
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=2.3e-80 Score=652.36 Aligned_cols=411 Identities=22% Similarity=0.331 Sum_probs=345.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh--CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
..|+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~ 81 (589)
T 2pgn_A 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL 81 (589)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence 45799999999999999999999999999999999986 4699999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCCCCC-CCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEE
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l 168 (437)
|+++||++||.+++|||+|+|+++....+++ .+|++||.. ++++|||++++++++++++.+++||+.|.++|||||||
T Consensus 82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 160 (589)
T 2pgn_A 82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYV 160 (589)
T ss_dssp GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 9999999999999999999999999999999 999999999 99999999999999999999999999999999999999
Q ss_pred EcCcchhccccchhHHHHHHHHhhhhcccccC--CCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhC
Q 013746 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQ--GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246 (437)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g 246 (437)
+||.|++.++++... ..+. .....+. ..++ ..+++++++|.+|+||+|++|+|+.++++.+++++|||++|
T Consensus 161 ~iP~dv~~~~~~~~~--~~~~----~~~~~~~~~~~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~ 233 (589)
T 2pgn_A 161 DIPFDLTADQIDDKA--LVPR----GATRAKSVLHAPN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVG 233 (589)
T ss_dssp EEETHHHHCEEECTT--TSCC----CCCCCCCCCCCCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHT
T ss_pred EeCHhhhhccccccc--cccc----ccccCCccCCChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhC
Confidence 999999876543210 0000 0000111 2233 77999999999999999999999988889999999999999
Q ss_pred CCeeeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH---------
Q 013746 247 IPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD--------- 310 (437)
Q Consensus 247 ~pv~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd--------- 310 (437)
+||++|++|||.+|++||+++|. ..+++++++|+||.||+++.+..+. +..+.++.++||||
T Consensus 234 ~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~--~~~~~~~~~~i~id~d~~~~~~~ 311 (589)
T 2pgn_A 234 VPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA--QGYITKMPKFVHVDTDPAVLGTF 311 (589)
T ss_dssp CCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT--TTTTCCCCSEEEEESCGGGTTSS
T ss_pred CCEEEccccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccccc--ccccCCCCeEEEEeCCHHHHCCC
Confidence 99999999999999999999883 3567889999999999999876543 34455677899987
Q ss_pred ----------------hHHhhhh-----h--------h-H--HHHHH-H-----Hhc--cCCCCCcccHHHHHHHHHhcc
Q 013746 311 ----------------AIWKKTK-----D--------N-V--LKMEV-Q-----LAK--DVVPFNFMTPMRIIRDAILGV 350 (437)
Q Consensus 311 ----------------~l~~~~~-----~--------~-~--~~~~~-~-----~~~--~~~~~~~~~~~~~i~~~l~~~ 350 (437)
+|.+.+. . . . .++.. . ... ...++++..+++.|.+.+
T Consensus 312 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l--- 388 (589)
T 2pgn_A 312 YFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVREQESGDGMPASMFRAMAEVRKVQ--- 388 (589)
T ss_dssp SCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHHHHHTC---
T ss_pred cCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHHHHhhhccCCCCCcCHHHHHHHHHHhC---
Confidence 1222221 0 0 1 11111 0 111 233466666666665544
Q ss_pred CCCCCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHH
Q 013746 351 GSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS 429 (437)
Q Consensus 351 ~~~~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r 429 (437)
+++++++.| |.+..|..++ ++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|+++
T Consensus 389 -~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~ 466 (589)
T 2pgn_A 389 -RPEDIIVTDIGNHTLPMFGG-AILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVE 466 (589)
T ss_dssp -CTTCEEEECSSTTHHHHHHH-CCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH
T ss_pred -CCCCEEEEcCchHHHHHHHh-cccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHH
Confidence 889999888 5666777664 5788899999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccC
Q 013746 430 CIIMISSI 437 (437)
Q Consensus 430 ~~l~i~~i 437 (437)
+++|++.|
T Consensus 467 ~~l~~~iv 474 (589)
T 2pgn_A 467 HKLPVITM 474 (589)
T ss_dssp TTCCCEEE
T ss_pred hCCCeEEE
Confidence 99998754
No 8
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=7e-80 Score=645.75 Aligned_cols=409 Identities=24% Similarity=0.391 Sum_probs=338.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
..|+++++|++.|+++||++|||+||+++++|++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 9 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (566)
T 1ozh_A 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNL 88 (566)
T ss_dssp EESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred ccCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHH
Confidence 34899999999999999999999999999999999977789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
++||++||.+++|||+|+|+++....+++.+|++||..+++++|||++++++++++++.+++||+.|.++|||||||+||
T Consensus 89 ~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 89 ITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.|++.++++.... .. ......+.++++.+++++++|++|+||+|++|+|+.++++.+++++|+|++|+||++
T Consensus 169 ~dv~~~~~~~~~~-~~-------~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~ 240 (566)
T 1ozh_A 169 QDVVDGPVSGKVL-PA-------SGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTS 240 (566)
T ss_dssp HHHHHSCEEECCC-CC-------CCSCEECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEE
T ss_pred hhhhhcccccccc-cc-------ccccCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEE
Confidence 9998776542110 00 011122346678899999999999999999999999899999999999999999999
Q ss_pred CCCCCCCCCCCCC-CcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCC-CCCceEEEhH------------
Q 013746 252 TPMGKGLLPDTHP-LAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVD------------ 310 (437)
Q Consensus 252 t~~gkg~~~~~hp-~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~~i~vd------------ 310 (437)
|++|||.+|++|| +++|. ..++++++||+||.||+.+...... .| .++.++||||
T Consensus 241 t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~----~~~~~~~~~i~id~d~~~~~~~~~~ 316 (566)
T 1ozh_A 241 TYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPA----MWNSGNATLVHIDVLPAYEERNYTP 316 (566)
T ss_dssp CGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGGGSCGG----GTCCSCSEEEEEESSCCCCBTTBCC
T ss_pred ccccCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCCcCCcc----ccCCCCCcEEEEeCCHHHhCCCCCC
Confidence 9999999999999 99874 3467889999999999965332211 22 2367899987
Q ss_pred -------------hHHhhhhh----h--HHHH---HHH----Hh----ccCCC-CCcccHHHHHHHHHhccCCCCCEEEe
Q 013746 311 -------------AIWKKTKD----N--VLKM---EVQ----LA----KDVVP-FNFMTPMRIIRDAILGVGSPAPILVS 359 (437)
Q Consensus 311 -------------~l~~~~~~----~--~~~~---~~~----~~----~~~~~-~~~~~~~~~i~~~l~~~~~~~~i~v~ 359 (437)
+|.+.+.. . ..++ .+. .. ....+ +++.++++.|.+.+ +++++++.
T Consensus 317 ~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l----~~~~iv~~ 392 (566)
T 1ozh_A 317 DVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIV----NSDVTLTV 392 (566)
T ss_dssp SEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHC----CTTEEEEE
T ss_pred CEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhC----CCCCEEEE
Confidence 11111110 0 0111 110 11 11223 66666677666655 88899888
Q ss_pred C-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 360 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 360 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
| |.+..|..+ +++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|++++++|++.|
T Consensus 393 d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~iv 470 (566)
T 1ozh_A 393 DMGSFHIWIAR-YLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHL 470 (566)
T ss_dssp CSSHHHHHHHH-TGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred cCcHHHHHHHH-hcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEE
Confidence 8 556666665 5677889999999999999999999999999999999999999999999999999999999998754
No 9
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=1.3e-79 Score=639.42 Aligned_cols=412 Identities=20% Similarity=0.251 Sum_probs=344.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 92 (437)
+++++++|++.|+++||++|||+||+++.+|++++. .+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~ 79 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAM 79 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTH
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHH
Confidence 368999999999999999999999999999999994 6799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEecCCCccCCCCCCCCC-cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcC
Q 013746 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 171 (437)
+||++||.+++|||+|+|++++...+++.+|+ +||..++++++||+.++++++++++.+++|++.|.++|||||||+||
T Consensus 80 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 80 GALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 99999999999999999999999999999999 79999999999999999999999999999999999999999999999
Q ss_pred cchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe-e
Q 013746 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF-L 250 (437)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv-~ 250 (437)
.|++..+.+... ..... ........++++.+++++++|++|+||+|++|.|+.++++.+++++|+|++|+|| +
T Consensus 160 ~d~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~ 233 (528)
T 1q6z_A 160 YDDWDKDADPQS-HHLFD-----RHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWV 233 (528)
T ss_dssp GGGTTSBCCGGG-GGGTT-----CCCCCCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEE
T ss_pred hhhhhCcccccc-ccccc-----cCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEE
Confidence 999877654321 00000 1111233467788999999999999999999999988889999999999999999 7
Q ss_pred eCCCCCCCCCCCCCCcccH------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHhHHhhhh-------
Q 013746 251 PTPMGKGLLPDTHPLAATA------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDAIWKKTK------- 317 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~l~~~~~------- 317 (437)
++.+|||.+|++||+++|. ..++++++||+||.+|+++.+..+.++...+.++.++||||.-...+.
T Consensus 234 ~~~~g~g~~~~~~p~~~G~~g~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 313 (528)
T 1q6z_A 234 APSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDA 313 (528)
T ss_dssp CSSCSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEE
T ss_pred eccCccccCCCCCccccCcCCCCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCCCCCee
Confidence 8889999999999999984 356788999999999999988766544333455789999982111110
Q ss_pred ------hhHHHHHHHHhc-----------------cCCCCCcccHHHHHHHHHhccCCCCCEEEeC-cchHHHHHHHhhh
Q 013746 318 ------DNVLKMEVQLAK-----------------DVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLV 373 (437)
Q Consensus 318 ------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~-g~~~~~~~~~~~~ 373 (437)
.....+...+.. ...++++.++++.|.+.+ |++++++.| |.+..|..+ +++
T Consensus 314 i~~d~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~d~g~~~~~~~~-~~~ 388 (528)
T 1q6z_A 314 IVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMA----PENAIYLNESTSTTAQMWQ-RLN 388 (528)
T ss_dssp EESCHHHHHHHHHHHSCCCCSCCCCCCCCCCCCCCCSSSBCHHHHHHHHHHHS----CTTCEEEEECTTSHHHHHH-HCC
T ss_pred EeCCHHHHHHHHHHHhhccccchHHHHhhhhcccccCCCcCHHHHHHHHHhhC----CCCeEEEECCcccHHHHHH-hcc
Confidence 001111111100 112344445555555554 889988887 556666655 457
Q ss_pred hcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 374 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 374 ~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..++++++.+++ |+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|++.|
T Consensus 389 ~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~iv 451 (528)
T 1q6z_A 389 MRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFV 451 (528)
T ss_dssp CCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEE
T ss_pred ccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEE
Confidence 778889999988 999999999999999999999999999999999999999999999998764
No 10
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=7.6e-80 Score=645.64 Aligned_cols=414 Identities=24% Similarity=0.382 Sum_probs=343.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
.+|+++++|++.|+++||++|||+||+++.+|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 45899999999999999999999999999999999976679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCCCC-cchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
++||++||.+++|||+|+|+++....+++.+|+ +||..+++++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++.++...... ..+.. ......+.++++.+++++++|.+|+||+|++|+|+.++++.+++++|+|++|+||+
T Consensus 162 P~dv~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~ 236 (563)
T 2uz1_A 162 PWDILMNQIDEDSV-IIPDL----VLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVF 236 (563)
T ss_dssp EHHHHHCEEEGGGS-CCCCC----CCCSSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEE
T ss_pred CHHHhhhhcccccc-ccccc----ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEE
Confidence 99966544211100 00000 01111334567889999999999999999999999888999999999999999999
Q ss_pred eCCCCCCCCCCC-CCCcccHHH------HhchhcCCEEEEEcCcCCCccccCCCCCCCC-CceEEEhH------------
Q 013746 251 PTPMGKGLLPDT-HPLAATAAR------SLAIGQCDVALVVGARLNWLLHFGEPPKWSK-DVKFVLVD------------ 310 (437)
Q Consensus 251 tt~~gkg~~~~~-hp~~~G~~~------~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~~i~vd------------ 310 (437)
+|++|||.+|++ ||+++|..+ ++ ++++|+||.||++++++.+. .+..|.+ +.++||||
T Consensus 237 ~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~ 314 (563)
T 2uz1_A 237 ADYEGLSMLSGLPDAMRGGLVQNLYSFAKA-DAAPDLVLMLGARFGLNTGH-GSGQLIPHSAQVIQVDPDACELGRLQGI 314 (563)
T ss_dssp ECGGGGGGGTTSCGGGEEEEGGGGGGTTTT-TCCCSEEEEESCCSSGGGTT-TSCSSSCTTSEEEEECSCGGGTTSSSCC
T ss_pred EcCcccCcCCCCCChhhcCCCCCCCHHHHh-hcCCCEEEEECCCCcccccc-cccccCCCCCeEEEEECCHHHhCCCCCC
Confidence 999999999999 999997542 34 78999999999999886543 3334545 67999997
Q ss_pred -------------hHHhhhhh-----h----H---HH-HHHHH---h-c--cCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 -------------AIWKKTKD-----N----V---LK-MEVQL---A-K--DVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 -------------~l~~~~~~-----~----~---~~-~~~~~---~-~--~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
+|.+.+.. . . .. +++.. . . ...++++.++++.|.+ .++++++++
T Consensus 315 ~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~iv~ 390 (563)
T 2uz1_A 315 ALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIAK----HVDAGVTVV 390 (563)
T ss_dssp SEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHT----TCSTTEEEE
T ss_pred CeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhhhhccccCCCcCHHHHHHHHHH----hCCCCcEEE
Confidence 12222211 0 0 01 11110 0 1 0124555555555544 348899998
Q ss_pred eC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhC--CCCcEEEEEcCccccCCHHHHHHHHHcCcccc
Q 013746 359 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC--PERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 359 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~--p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~ 435 (437)
.| |.+..|..+ ++...+|++++.++++|+||+++|+|+|+++++ |+++||+++|||+|+|++|||+|++++++|++
T Consensus 391 ~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ 469 (563)
T 2uz1_A 391 ADGALTYLWLSE-VMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLI 469 (563)
T ss_dssp ECSSHHHHHHHH-HHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHTCCCE
T ss_pred EcCchHHHHHHH-hccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhCCCeE
Confidence 88 444566655 568888999999999999999999999999999 99999999999999999999999999999986
Q ss_pred cC
Q 013746 436 SI 437 (437)
Q Consensus 436 ~i 437 (437)
.|
T Consensus 470 iv 471 (563)
T 2uz1_A 470 VI 471 (563)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 11
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=7.3e-79 Score=639.21 Aligned_cols=408 Identities=23% Similarity=0.306 Sum_probs=342.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCC-hHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIP-VTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~-~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+|+++++|++.|+++||++|||+||++ +.+|++++. . |++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 489999999999999999999999999 999999987 4 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCC-CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGR-GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~-~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
++||++||.+++|||+|||+++....++ +.+|++||..+++++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhccc------cchhHHHHHHHHhhhhcccccC--CCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHH
Q 013746 171 PTDVLHQT------ISVSEAEKLLKEAESAKETVTQ--GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (437)
Q Consensus 171 P~dv~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~la 242 (437)
|.|++..+ ++... ..+ ...+.. +.++++.+++++++|++|+||+|++|+|+.++++.+++++|+
T Consensus 169 P~dv~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~la 240 (573)
T 2iht_A 169 PVDLLGSSEGIDTTVPNPP--ANT------PAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALA 240 (573)
T ss_dssp EHHHHTCCTTCC---CCCC--CCC------CSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHH
T ss_pred cchHhhhhhcccccCCccc--ccc------CCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHH
Confidence 99998765 22110 000 000111 125567899999999999999999999998888999999999
Q ss_pred HHhCCCeeeCCCCCCCCCCCCCCcccHH------------HHhchhcCCEEEEEcCc-CCCccccCCCCCCCCCceEEEh
Q 013746 243 ESTGIPFLPTPMGKGLLPDTHPLAATAA------------RSLAIGQCDVALVVGAR-LNWLLHFGEPPKWSKDVKFVLV 309 (437)
Q Consensus 243 e~~g~pv~tt~~gkg~~~~~hp~~~G~~------------~~~~l~~aDlvl~iG~~-~~~~~~~~~~~~~~~~~~~i~v 309 (437)
|++|+||++|++|||.+|++||+++|.. .+++++++|+||.||++ +.+..+..+. . .++.++|||
T Consensus 241 e~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~-~~~~~~i~i 318 (573)
T 2iht_A 241 ERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-K-GIEKKTVRI 318 (573)
T ss_dssp HHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-C-SSCCEEEEE
T ss_pred HHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-C-CCCCeEEEE
Confidence 9999999999999999999999998743 34678899999999999 8655432221 1 146689988
Q ss_pred H-------------------------hHHhhhhh-------hHHHHHHHHh----c---cCCCCCcccHHHHHHHHHhcc
Q 013746 310 D-------------------------AIWKKTKD-------NVLKMEVQLA----K---DVVPFNFMTPMRIIRDAILGV 350 (437)
Q Consensus 310 d-------------------------~l~~~~~~-------~~~~~~~~~~----~---~~~~~~~~~~~~~i~~~l~~~ 350 (437)
| +|.+.+.. ....+++... . ...++++.++++.|.+.+
T Consensus 319 d~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 395 (573)
T 2iht_A 319 SPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVM--- 395 (573)
T ss_dssp ESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHHHTCCCCCSSSBCHHHHHHHHHHHH---
T ss_pred eCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhhhhccccCcCCcCHHHHHHHHHHhc---
Confidence 7 12121111 0011111110 1 123566677788887777
Q ss_pred CCC-----CCEEEeC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHH
Q 013746 351 GSP-----APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424 (437)
Q Consensus 351 ~~~-----~~i~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL 424 (437)
++ +++++.| |.+..|..++ ++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|+++||
T Consensus 396 -~~~~~~~~~iv~~d~G~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L 473 (573)
T 2iht_A 396 -EEAAEPGEGTIVSDIGFFRHYGVLF-ARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDL 473 (573)
T ss_dssp -HHHSCTTCCEEEECSSHHHHHHHHH-CCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGH
T ss_pred -ccccCCCCcEEEEcCcHhHHHHHHh-cCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHH
Confidence 66 8888888 6666666654 57788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccccC
Q 013746 425 EVWLSCIIMISSI 437 (437)
Q Consensus 425 ~Ta~r~~l~i~~i 437 (437)
+|++++++|++.|
T Consensus 474 ~~a~~~~l~~~iv 486 (573)
T 2iht_A 474 ETIARLNLPIVTV 486 (573)
T ss_dssp HHHHHHTCCCEEE
T ss_pred HHHHHhCCCeEEE
Confidence 9999999998653
No 12
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=7.3e-78 Score=633.08 Aligned_cols=409 Identities=21% Similarity=0.280 Sum_probs=342.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC--CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL--GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
+|+++++|++.|+++||++|||+||+++++|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 37999999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++||.+++|||+|+|+++....+++.+|++||..++++++||++++++++++++.+++||+.|.++||||||| |
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcchhccccchhHHH-HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCe
Q 013746 171 PTDVLHQTISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (437)
Q Consensus 171 P~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (437)
|.|++..+++..... ..... ....+. .++.+.+++++++|++|+||+|++|+|+ + ++.+++++|+|++|+||
T Consensus 162 P~dv~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~lae~~~~Pv 234 (590)
T 1v5e_A 162 PGDFAKVEIDNDQWYSSANSL----RKYAPI-APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQELARKIKAPV 234 (590)
T ss_dssp ETTGGGCEEEGGGCCCCGGGC----CCCCCC-CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHHHHHHTCCE
T ss_pred ccchhhcccCccccccccccc----ccCCCC-CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHHHHHHCCCE
Confidence 999987765421100 00000 000111 4567889999999999999999999999 7 88999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccH-------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 250 ~tt~~gkg~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
++|++|||.+|++||+++|. ..++++++||+||++|+++++...++. .| ++.++||||
T Consensus 235 ~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~--~~-~~~~~i~id~d~~~~~~~~~~ 311 (590)
T 1v5e_A 235 ITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGT--FR-NVDNFIQIDIDPAMLGKRHHA 311 (590)
T ss_dssp EECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTT--TT-TCSEEEEEESCGGGTTSSSCC
T ss_pred EEccccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhcccc--CC-CCCeEEEEeCCHHHHCCCcCC
Confidence 99999999999999999984 456788999999999999987642221 13 467899987
Q ss_pred -------------hHHhhhhh----h----HHHHHHH---Hh-----ccCCCCCcccHHHHHHHHHhccCCCCCEEEeC-
Q 013746 311 -------------AIWKKTKD----N----VLKMEVQ---LA-----KDVVPFNFMTPMRIIRDAILGVGSPAPILVSE- 360 (437)
Q Consensus 311 -------------~l~~~~~~----~----~~~~~~~---~~-----~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~- 360 (437)
+|.+.+.. . ...+... .. ....++++.++++.|.+.+ +++++++.|
T Consensus 312 ~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ivv~d~ 387 (590)
T 1v5e_A 312 DVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHA----DEDAIYSIDV 387 (590)
T ss_dssp SEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHS----CTTCEEEECS
T ss_pred CeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhC----CCCCEEEECC
Confidence 11111110 0 0001110 00 1234566667777776665 889999888
Q ss_pred cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 361 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 361 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|.+..|..+ +++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|++++++|++.|
T Consensus 388 G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~iv 463 (590)
T 1v5e_A 388 GNSTQTSIR-HLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINV 463 (590)
T ss_dssp SHHHHGGGG-TCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred chHHHHHHH-hcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCEEE
Confidence 555666554 5677889999999999999999999999999999999999999999999999999999999998754
No 13
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=5.2e-78 Score=637.84 Aligned_cols=412 Identities=27% Similarity=0.375 Sum_probs=342.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH 90 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n 90 (437)
+|+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+| |+++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 3699999999999999999999999999999999975 5799999999999999999999999 8999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 170 (437)
+++||++|+.+++|||+|+|+++....+++.+|++||..+++++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.|++..+.+....... ..+...+.+.++.+++++++|++|+||+|++|.|+.++++.+++++|+|++|+||+
T Consensus 186 P~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~ 258 (616)
T 2pan_A 186 PFDVQVAEIEFDPDMYE-------PLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVI 258 (616)
T ss_dssp EHHHHHSEEECCGGGCC-------CCCCCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred chhhhhccccccccccc-------ccccCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence 99998765432110000 00111223357789999999999999999999999888999999999999999999
Q ss_pred eCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH------------
Q 013746 251 PTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD------------ 310 (437)
Q Consensus 251 tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd------------ 310 (437)
+|+++||.+|++||+++|. ..+++++++|+||.||+++++..+ +....|.++.++||||
T Consensus 259 ~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~ 337 (616)
T 2pan_A 259 PTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHT-GSVEKYTEGRKIVHIDIEPTQIGRVLCP 337 (616)
T ss_dssp ECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHH-SSHHHHHTTCEEEEEESCGGGTTSSSCC
T ss_pred EccccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCccccc-CcccccCCCCeEEEEeCCHHHhCCCCCC
Confidence 9999999999999999884 456788999999999999986433 3222344567888887
Q ss_pred -------------hHHhhhhh--------hHHHHHH---HHhc--------cCCCCCcccHHHHHHHHHhccCCCCCEEE
Q 013746 311 -------------AIWKKTKD--------NVLKMEV---QLAK--------DVVPFNFMTPMRIIRDAILGVGSPAPILV 358 (437)
Q Consensus 311 -------------~l~~~~~~--------~~~~~~~---~~~~--------~~~~~~~~~~~~~i~~~l~~~~~~~~i~v 358 (437)
+|.+.+.. ...++.. .... ...++++.++++.|.+.+ +++++++
T Consensus 338 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~ivv 413 (616)
T 2pan_A 338 DLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAF----GRDVCYV 413 (616)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHS----CTTEEEE
T ss_pred CeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhC----CCCcEEE
Confidence 11111110 0011111 1000 112355556666666555 8889998
Q ss_pred eC-cchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 359 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 359 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.| |.+..|..+ +++..+|++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|++.|
T Consensus 414 ~d~G~~~~~~~~-~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 492 (616)
T 2pan_A 414 TTIGLSQIAAAQ-MLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHV 492 (616)
T ss_dssp ECSSHHHHHHHH-HCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred EcCcHHHHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEE
Confidence 88 555666655 4577788999999999999999999999999999999999999999999999999999999998653
No 14
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=4.6e-78 Score=632.79 Aligned_cols=412 Identities=17% Similarity=0.249 Sum_probs=334.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+|+++++|++.|+++||++|||+||+++.+|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 58999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCC--------CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDF--------QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~--------q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
++||++||.+++|||+|+|+++....+++.+ |..||..+++++|||++++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999988776532 3348999999999999999999999999999999999987
Q ss_pred ceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHH
Q 013746 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (437)
Q Consensus 164 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae 243 (437)
|||||+||.|++..+++......... ..+...+.+++..+++++++|.+|+||+|++|+|+.++++.+++++|+|
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae 234 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPGPASALF-----NDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFAD 234 (568)
T ss_dssp CCEEEEEEGGGTTSEECEECCTHHHH-----CCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHH
T ss_pred CCEEEEechhHhcCcccCCCcccccc-----cCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHH
Confidence 99999999999877654211111110 0111111223567999999999999999999999999999999999999
Q ss_pred HhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-----
Q 013746 244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD----- 310 (437)
Q Consensus 244 ~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd----- 310 (437)
++|+||++|++|||.+|++||+++|. ..+++++++|+||.+|+++.++.+.++. .+.++.++||||
T Consensus 235 ~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~ 313 (568)
T 2wvg_A 235 ALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWT-DIPDPKKLVLAEPRSVV 313 (568)
T ss_dssp HHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTT-CCCCTTTEEEECSSEEE
T ss_pred HhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccc-cCCCCCcEEEEeCChhh
Confidence 99999999999999999999999884 2456789999999999999876654432 334567899987
Q ss_pred ----------------hHHhhhhhhHHHHHHHHh-c-----------cCCCCCcccHHHHHHHHHhccCCCCCEEEeCcc
Q 013746 311 ----------------AIWKKTKDNVLKMEVQLA-K-----------DVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA 362 (437)
Q Consensus 311 ----------------~l~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~ 362 (437)
+|.+.+......|..+.. . ...++++.++++.| ++.++++++++.|.+
T Consensus 314 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~iv~~d~G 389 (568)
T 2wvg_A 314 VNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQV----EALLTPNTTVIAETG 389 (568)
T ss_dssp ETTEEEESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHH----HTTCCTTEEEEECSS
T ss_pred cCCeecCCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHH----HHhCCCCCEEEEcCc
Confidence 111111110111111111 1 01123333444444 444488999998855
Q ss_pred hHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 363 NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
+..|.. .++...++++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|++.|
T Consensus 390 ~~~~~~-~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~iv 463 (568)
T 2wvg_A 390 DSWFNA-QRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIF 463 (568)
T ss_dssp HHHHHH-HTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred HHHHHH-hhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEE
Confidence 545543 45566778899999999999999999999999999999999999999999999999999999998653
No 15
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=1.4e-77 Score=628.80 Aligned_cols=412 Identities=18% Similarity=0.261 Sum_probs=335.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 013746 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~ 91 (437)
+|+++++|++.|+++||++|||+||+++.+|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 58999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCCCCCCC--------CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCC
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDF--------QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~--------q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~ 163 (437)
++||++||.+++|||+|+|+++....+++.+ |..||..+++++|||++++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999988776642 2248999999999999999999999999999999999987
Q ss_pred ceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHH
Q 013746 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (437)
Q Consensus 164 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae 243 (437)
|||||+||.|++..+++......... ..+...+.+++..+++++++|++|+||+|++|+|+.++++.+++++|+|
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 234 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPVSSLL-----SEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLAD 234 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCCSCSC-----CCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHH
T ss_pred CCEEEEechhhcCCeecCCCCCcccC-----CCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHH
Confidence 99999999999877654211000000 0000111123467899999999999999999999999999999999999
Q ss_pred HhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh----
Q 013746 244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA---- 311 (437)
Q Consensus 244 ~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~---- 311 (437)
++|+||++|++|||.+|++||+++|. ..+++++++|+||.||+++.++.+.++. .+.++.++||||.
T Consensus 235 ~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~ 313 (566)
T 2vbi_A 235 KLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWS-AWPKGPNVILAEPDRVT 313 (566)
T ss_dssp HHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTT-SCCCSTTEEEECSSEEE
T ss_pred HhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCcccccccccc-ccCCCCcEEEEeCChhe
Confidence 99999999999999999999999874 2456789999999999999887654432 3345678999871
Q ss_pred -----------------HHhhhhhhHHHHHHHHh--------ccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchHHH
Q 013746 312 -----------------IWKKTKDNVLKMEVQLA--------KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMD 366 (437)
Q Consensus 312 -----------------l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~~ 366 (437)
|.+.+......|..+.. ....++++.++++.|.+.+ +++++++.|.++..|
T Consensus 314 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~iv~~d~G~~~~ 389 (566)
T 2vbi_A 314 VDGRAYDGFTLRAFLQALAEKAPARPASAQKSSVPTCSLTATSDEAGLTNDEIVRHINALL----TSNTTLVAETGDSWF 389 (566)
T ss_dssp ETTEEEESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCCCCCCCTTSCCCHHHHHHHHHHHC----CTTEEEEECSSHHHH
T ss_pred eCCcccCCccHHHHHHHHHHhccccccchhhhhhhhhccCCCCCCCccCHHHHHHHHHHhc----CCCCEEEECCchHHH
Confidence 11111100011111000 0112355555666665554 889999888554445
Q ss_pred HHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 367 VGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.. .+++..++++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|++++++|++.|
T Consensus 390 ~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~iv 459 (566)
T 2vbi_A 390 NA-MRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIF 459 (566)
T ss_dssp HH-HTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred hh-hheECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEE
Confidence 43 44566678889999999999999999999999999999999999999999999999999999997653
No 16
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=3.4e-78 Score=632.82 Aligned_cols=416 Identities=19% Similarity=0.235 Sum_probs=330.7
Q ss_pred CCccccccCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCC-CcEeeccchHHHHHHHHHHHhHhCCcEEE
Q 013746 2 AGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGKPGIL 80 (437)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~-i~~i~~~~E~~A~~~A~gyar~tg~~~v~ 80 (437)
|+|.|.+.+ .+|+++++|++.|+++||++|||+||+++.+|++++.+.+ +++|.++||++|+|||+||+|+||||+||
T Consensus 10 ~~~~~~~~~-~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~ 88 (565)
T 2nxw_A 10 HSSGLVPRG-SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVA 88 (565)
T ss_dssp ----CCCCS-CCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEE
T ss_pred cccCCccCC-CCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEE
Confidence 345555443 4589999999999999999999999999999999997654 68999999999999999999999999999
Q ss_pred EEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCC-----CCcc-hhhhccCccceeeecCCcCchHHHHHHH
Q 013746 81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-----QELD-QVEAVKPFSKFAVKAKDITEVPKCVAQV 154 (437)
Q Consensus 81 ~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~-----q~~d-~~~~~~~~~k~~~~v~~~~~~~~~l~~A 154 (437)
++|+|||++|+++||++||.+++|||+|||+++....+++.+ |++| |..++++++||++++++++++++.+++|
T Consensus 89 ~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A 168 (565)
T 2nxw_A 89 AVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARV 168 (565)
T ss_dssp EECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888764 6788 9999999999999999999999999999
Q ss_pred HHHhhcCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccch
Q 013746 155 LERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234 (437)
Q Consensus 155 ~~~a~~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~ 234 (437)
|+.|.++ +|||||+||.|++.++++... .. ......+.+.+..+++++++|.+|+||+|++|+|+.++++
T Consensus 169 ~~~A~~~-~GPV~l~iP~Dv~~~~~~~~~--~~-------~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a 238 (565)
T 2nxw_A 169 LGAARAQ-SRPVYLEIPRNMVNAEVEPVG--DD-------PAWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGL 238 (565)
T ss_dssp HHHHHHH-TCCEEEEEEGGGTTCBCCCCC--CC-------CCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTC
T ss_pred HHHHHhC-CCCEEEECChhhhcCcCCCcc--cc-------CCCCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhch
Confidence 9999986 599999999999987764211 00 0001111122456899999999999999999999988889
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceE
Q 013746 235 EGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF 306 (437)
Q Consensus 235 ~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ 306 (437)
.+++++|||++|+||++|++|||.+|++||+++|. ..+++++++|+||.+|+++.+..+..+...+ +..++
T Consensus 239 ~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~ 317 (565)
T 2nxw_A 239 EAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKI-DLRKT 317 (565)
T ss_dssp HHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTS-CGGGE
T ss_pred HHHHHHHHHHhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccC-CCCcE
Confidence 99999999999999999999999999999999884 2456789999999999999876543332222 34578
Q ss_pred EEhHh----HHhh------hhhhHHHHHHHH-----------h--------ccCCCCCcccHHHHHHHHHhccCCC--CC
Q 013746 307 VLVDA----IWKK------TKDNVLKMEVQL-----------A--------KDVVPFNFMTPMRIIRDAILGVGSP--AP 355 (437)
Q Consensus 307 i~vd~----l~~~------~~~~~~~~~~~~-----------~--------~~~~~~~~~~~~~~i~~~l~~~~~~--~~ 355 (437)
|+||. +... +......+...+ . ....++++.++++.|.+.+ |+ ++
T Consensus 318 i~i~~d~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~w~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l----~~~~~~ 393 (565)
T 2nxw_A 318 IHAFDRAVTLGYHTYADIPLAGLVDALLERLPPSDRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRV----RAGQEP 393 (565)
T ss_dssp EEEETTEEEETTEEEESCCHHHHHHHHHHTSCCCCCCCCCSCSSCCCCCCCCSSSBCCHHHHHHHHHHHH----HTTCCC
T ss_pred EEEeCCceeeCCcccCCccHHHHHHHHHHhccccchhhhhhhhhhccccccCCCCccCHHHHHHHHHHhc----ccccCC
Confidence 88861 1000 000000110000 0 0112355566777777777 77 88
Q ss_pred EE-EeCcchHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCccc
Q 013746 356 IL-VSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 434 (437)
Q Consensus 356 i~-v~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i 434 (437)
++ +.|.++..|+... . .+++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|+++||+|++++++|+
T Consensus 394 iv~~~d~G~~~~~~~~---~-~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~ 469 (565)
T 2nxw_A 394 LLIAADMGDCLFTAMD---M-IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDP 469 (565)
T ss_dssp CEEEECSSHHHHHHTT---S-CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCC
T ss_pred EEEEecchHHHHHHHh---C-CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCC
Confidence 87 7885554454432 2 67889999999999999999999999999999999999999999999999999999997
Q ss_pred ccC
Q 013746 435 SSI 437 (437)
Q Consensus 435 ~~i 437 (437)
+.|
T Consensus 470 ~iv 472 (565)
T 2nxw_A 470 IVI 472 (565)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 17
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=1.3e-77 Score=629.05 Aligned_cols=412 Identities=20% Similarity=0.253 Sum_probs=330.8
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
.+|+++++|++.|+++||++|||+||+++++|++++.+. +|++|.+|||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N 80 (563)
T 2vk8_A 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELS 80 (563)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHH
Confidence 458999999999999999999999999999999999764 7999999999999999999999999 99999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccC----------CCCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~----------~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 160 (437)
+++||++||.+++|||+|+|+++... .+++.+| ||..+++++|||++++++++++++.+++|++.|.+
T Consensus 81 ~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 158 (563)
T 2vk8_A 81 ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYV 158 (563)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998765 3566788 68899999999999999999999999999999998
Q ss_pred CCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH
Q 013746 161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (437)
Q Consensus 161 ~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~ 240 (437)
+| |||||+||.|++..+++......... ...+...+.++++.+++++++|++|+||+|++|+|+.++++.+++++
T Consensus 159 ~~-GPV~l~iP~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 233 (563)
T 2vk8_A 159 TQ-RPVYLGLPANLVDLNVPAKLLQTPID----MSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKK 233 (563)
T ss_dssp HT-SCEEEEEETTGGGSEEEGGGGGSCCC----CSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CC-CCEEEEechhhhcCccCCccCcCccc----ccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHH
Confidence 86 99999999999876654221000000 00000111122456899999999999999999999988899999999
Q ss_pred HHHHhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh-
Q 013746 241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA- 311 (437)
Q Consensus 241 lae~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~- 311 (437)
|||++|+||++|++|||.+|++||+++|. ..++++++||+||.||++++++.+.++. .+.++.++||||.
T Consensus 234 lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d 312 (563)
T 2vk8_A 234 LIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFS-YSYKTKNIVEFHSD 312 (563)
T ss_dssp HHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTC-CCCCCSCEEEECSS
T ss_pred HHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccc-cCCCCCeEEEEeCC
Confidence 99999999999999999999999999874 3467889999999999999887654432 2335678999881
Q ss_pred -------------HHhhhhhhHHHHHH--HHhc---------------cCCCCCcccHHHHHHHHHhccCCCCCEEEeCc
Q 013746 312 -------------IWKKTKDNVLKMEV--QLAK---------------DVVPFNFMTPMRIIRDAILGVGSPAPILVSEG 361 (437)
Q Consensus 312 -------------l~~~~~~~~~~~~~--~~~~---------------~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g 361 (437)
+...+......... +.+. ...++++.++++ .|++.++++++++.|.
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~iv~~d~ 388 (563)
T 2vk8_A 313 HMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWN----QLGNFLQEGDVVIAET 388 (563)
T ss_dssp EEEETTEEEETCCHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCCCCCCTTCBCCHHHHHH----HHTTTCCTTCEEEECT
T ss_pred ceEECCcccCCcCHHHHHHHHHHhhccccchhhhhhhhhhcccccCCCCCCCcCHHHHHH----HHHHhCCCCCEEEECC
Confidence 11111100000000 0000 011233333333 3445558999999885
Q ss_pred chHHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCC----CcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 362 ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE----RLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~----~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
++..+.. .++....+++++.++++|+||+++|+|+|+++++|+ ++||+++|||+|+|+++||+|++++++|++.|
T Consensus 389 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~iv 467 (563)
T 2vk8_A 389 GTSAFGI-NQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLF 467 (563)
T ss_dssp THHHHHG-GGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred chHHHHH-hhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCCcEEE
Confidence 5544543 345666788999999999999999999999999988 99999999999999999999999999998754
No 18
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=5e-77 Score=628.68 Aligned_cols=414 Identities=15% Similarity=0.097 Sum_probs=331.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..++++++|++.|+++||++|||+||+++++|++++.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 29 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N 108 (604)
T 2x7j_A 29 PITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAAN 108 (604)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHH
Confidence 346899999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCc-------hHHHHHHHHHHhhcCCC
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE-------VPKCVAQVLERAVSGRP 163 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~-------~~~~l~~A~~~a~~~~~ 163 (437)
+++||++||.+++|||+|||++++...+++.+|++||..+++++|||+++++++++ +++.+++||+.|.++||
T Consensus 109 ~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~ 188 (604)
T 2x7j_A 109 FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPM 188 (604)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred ceeEEEcCcchhccccchhH-HH--HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH
Q 013746 164 GGCYLDLPTDVLHQTISVSE-AE--KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (437)
Q Consensus 164 GPv~l~iP~dv~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~ 240 (437)
|||||+||.|++..+..... .. ..... .......+.+++..+++++++|++|+||+|++|+|+ ++++.+++++
T Consensus 189 GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~~l~~ 264 (604)
T 2x7j_A 189 GPVHVNVPLREPLMPDLSDEPFGRMRTGRH---VSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKENIIA 264 (604)
T ss_dssp CEEEEEEECCSCCCCCTTSCTTCCSSSSCS---SEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHHHHHH
T ss_pred CcEEEEcccCccCCCccccccccccccccc---ccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHHHHHH
Confidence 99999999998654432110 00 00000 000111123456679999999999999999999998 5677899999
Q ss_pred HHHHhCCCeeeCCCCCCCC-CCCCCCcccHHH--------HhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH-
Q 013746 241 LVESTGIPFLPTPMGKGLL-PDTHPLAATAAR--------SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD- 310 (437)
Q Consensus 241 lae~~g~pv~tt~~gkg~~-~~~hp~~~G~~~--------~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd- 310 (437)
|||++|+||++|+++++.+ |++||+++|... ++.++ +|+||.||+++.+..+..+... .++.++||||
T Consensus 265 lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~ 342 (604)
T 2x7j_A 265 LSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKD-DPTIQQIVIDE 342 (604)
T ss_dssp HHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHH-CTTSEEEEECT
T ss_pred HHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhh-CCCCeEEEECC
Confidence 9999999999999988766 888999988432 23454 8999999999976433211111 1245788887
Q ss_pred ------------------------hHHhhhh-h-h----HHHH---HHH----Hh--ccCCCCCcccHHHHHHHHHhccC
Q 013746 311 ------------------------AIWKKTK-D-N----VLKM---EVQ----LA--KDVVPFNFMTPMRIIRDAILGVG 351 (437)
Q Consensus 311 ------------------------~l~~~~~-~-~----~~~~---~~~----~~--~~~~~~~~~~~~~~i~~~l~~~~ 351 (437)
+|.+.+. . . ..++ ... .. ....++++.++++.|.+.+
T Consensus 343 d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l---- 418 (604)
T 2x7j_A 343 DGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLV---- 418 (604)
T ss_dssp TCCCCCTTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHHHTSCCCCTTSHHHHHHHHHHHS----
T ss_pred CCCccCCCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC----
Confidence 1222221 0 0 1111 111 11 1123566666777776655
Q ss_pred CCCCEEEeC-cchHHHHHHHhhhhcC-CCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHH
Q 013746 352 SPAPILVSE-GANTMDVGRAVLVQTE-PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS 429 (437)
Q Consensus 352 ~~~~i~v~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r 429 (437)
|++++++.| |.+..|+.+ +++... +.+++.++++++||+++|+|+|++++ ++++||+++|||+|+|++|||+|+++
T Consensus 419 p~d~iv~~d~g~~~~~~~~-~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~ 496 (604)
T 2x7j_A 419 PENSSLFVGNSMPIRDVDT-FFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKK 496 (604)
T ss_dssp CTTCEEEECTTHHHHHHHH-HCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHH
T ss_pred CCCCEEEEECCHHHHHHHH-hcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhh
Confidence 889988888 555555544 445554 88999999999999999999999999 68999999999999999999999999
Q ss_pred cCcccccC
Q 013746 430 CIIMISSI 437 (437)
Q Consensus 430 ~~l~i~~i 437 (437)
+++|++.|
T Consensus 497 ~~lp~~iv 504 (604)
T 2x7j_A 497 LGIPLTVI 504 (604)
T ss_dssp HCCCEEEE
T ss_pred cCCCeEEE
Confidence 99998754
No 19
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=5.6e-77 Score=625.25 Aligned_cols=421 Identities=15% Similarity=0.106 Sum_probs=327.2
Q ss_pred ccccCccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcC
Q 013746 6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84 (437)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~ 84 (437)
+++.+...++++++|++.|+++||++|||+||+++++|++++.+ ++|++|.+|||++|+|||+||+|+||||+||++|+
T Consensus 3 ~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~Ts 82 (578)
T 3lq1_A 3 LTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTS 82 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECC
Confidence 44555566899999999999999999999999999999999986 47999999999999999999999999999999999
Q ss_pred ChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHH-------HHHHHHHH
Q 013746 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPK-------CVAQVLER 157 (437)
Q Consensus 85 GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~-------~l~~A~~~ 157 (437)
|||++|+++||++||.+++|||+|||+++....+++.+|++||..+++++|||++++++++++++ .+++||+.
T Consensus 83 GpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~ 162 (578)
T 3lq1_A 83 GTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDI 162 (578)
T ss_dssp SHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998775 89999999
Q ss_pred hhcCCCceeEEEcCcchhccc-cchhHHH-HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchH
Q 013746 158 AVSGRPGGCYLDLPTDVLHQT-ISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235 (437)
Q Consensus 158 a~~~~~GPv~l~iP~dv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~ 235 (437)
|.++|||||||+||.|++..+ ++..... ..+...+ ...+...+.+++..+++++++|++ +||+|++|+|+.+ ++.
T Consensus 163 A~~gr~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~~~ 239 (578)
T 3lq1_A 163 AMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHH-VHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-ELE 239 (578)
T ss_dssp HHSSSCCCEEEEEECCSCCCCCCSSCCC-------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-TCH
T ss_pred hhCCCCCcEEEECccCCCCCCCcccchhcccCccccc-cccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-HHH
Confidence 999999999999999976543 2211100 0000000 001111233567889999999999 9999999999976 567
Q ss_pred HHHHHHHHHhCCCeeeCCC-CCCCCCCCCCCcccHHH-------HhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEE
Q 013746 236 GELKKLVESTGIPFLPTPM-GKGLLPDTHPLAATAAR-------SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFV 307 (437)
Q Consensus 236 ~~l~~lae~~g~pv~tt~~-gkg~~~~~hp~~~G~~~-------~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i 307 (437)
+++++|+|++|+||++|++ +++.+|++||+++|.+. ...+++||+||.+|+++.+.....+... .++.++|
T Consensus 240 ~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~-~~~~~~i 318 (578)
T 3lq1_A 240 QPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQ-LSDIRFY 318 (578)
T ss_dssp HHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHH-CCSSEEE
T ss_pred HHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhc-CCCCEEE
Confidence 9999999999999999965 69999999999998542 2346799999999998754322111111 2456888
Q ss_pred EhH-------------------------hHHhhhhh---hH---HHHHH--------HH--hccCCCCCcccHHHHHHHH
Q 013746 308 LVD-------------------------AIWKKTKD---NV---LKMEV--------QL--AKDVVPFNFMTPMRIIRDA 346 (437)
Q Consensus 308 ~vd-------------------------~l~~~~~~---~~---~~~~~--------~~--~~~~~~~~~~~~~~~i~~~ 346 (437)
||| +|.+.+.. .. .++.. .. .....++++.++++.|.+.
T Consensus 319 ~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (578)
T 3lq1_A 319 VVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRL 398 (578)
T ss_dssp EECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHHHHHHH
T ss_pred EECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHHHHHHh
Confidence 887 12121110 00 11111 11 1123457777778777776
Q ss_pred HhccCCCCCEEEeCcc-hHHHHHHHhhh-hcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHH
Q 013746 347 ILGVGSPAPILVSEGA-NTMDVGRAVLV-QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424 (437)
Q Consensus 347 l~~~~~~~~i~v~~g~-~~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL 424 (437)
+ |++++++.+.+ ...+..+ ++. ...+.+++.+.++++||+++|+|||+++ |+|+||+++|||||+|++|||
T Consensus 399 l----~~~~iv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL 471 (578)
T 3lq1_A 399 L----PDKAGLFIGNSMPIRDVDT-YFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGL 471 (578)
T ss_dssp S----CSEEEEEECSSHHHHHHHH-HCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGG
T ss_pred C----CCCCeEEEeCccHHHHHHH-hhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHH
Confidence 6 88888877744 3334444 333 3455577777777778889999999974 689999999999999999999
Q ss_pred HHHHHcCcccccC
Q 013746 425 EVWLSCIIMISSI 437 (437)
Q Consensus 425 ~Ta~r~~l~i~~i 437 (437)
+|++||++|++.|
T Consensus 472 ~ta~~~~l~~~iv 484 (578)
T 3lq1_A 472 LMAKKYKMNLTIV 484 (578)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HhhccCCCCeEEE
Confidence 9999999998754
No 20
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=2.9e-76 Score=617.55 Aligned_cols=410 Identities=20% Similarity=0.239 Sum_probs=332.5
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 013746 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (437)
Q Consensus 11 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 89 (437)
+..|+++++|++.|+++||++|||+||+++++|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++
T Consensus 2 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~ 80 (552)
T 1ovm_A 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGEL 80 (552)
T ss_dssp -CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHH
Confidence 3468999999999999999999999999999999999864 7999999999999999999999999 9999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccCC----------CCCCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhh
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKDF----------GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV 159 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----------~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 159 (437)
|+++||++||.+++|||+|+|+++.... +.+.+| ||..+++++|||++++++ +++++.+++|++.|.
T Consensus 81 N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~ 157 (552)
T 1ovm_A 81 SAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTML 157 (552)
T ss_dssp HTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHH
Confidence 9999999999999999999999987653 445677 588999999999999999 999999999999999
Q ss_pred cCCCceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHH
Q 013746 160 SGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239 (437)
Q Consensus 160 ~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~ 239 (437)
++| |||||++|.|++.++++.... ... ...+...+.++++.+++++++|++|+||+|++|+|+.++++.++++
T Consensus 158 ~~~-GPV~l~iP~d~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~ 230 (552)
T 1ovm_A 158 RER-RPGYLMLPADVAKKAATPPVN-ALT-----HKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQ 230 (552)
T ss_dssp HHT-CCEEEEEEHHHHHSBCCCCSS-CCC-----CCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHH
T ss_pred hCC-CCEEEEeehhhccCccCCCcc-ccc-----ccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHH
Confidence 876 999999999998766542210 000 0000011112346789999999999999999999998889999999
Q ss_pred HHHHHhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh
Q 013746 240 KLVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA 311 (437)
Q Consensus 240 ~lae~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~ 311 (437)
+|+|++|+||++|++|||.+|++||+++|. ..++++++||+||.||+++++..+.++ ..+.++.++||||.
T Consensus 231 ~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~-~~~~~~~~~i~id~ 309 (552)
T 1ovm_A 231 KWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGF-THQLTPAQTIEVQP 309 (552)
T ss_dssp HHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTT-CCCCCTTTEEEECS
T ss_pred HHHHHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCccccccc-ccCCCCCeEEEEeC
Confidence 999999999999999999999999999874 356788999999999999988765443 23345678999871
Q ss_pred --------------H---Hhhhhh---h----HHHHHHHH----hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcch
Q 013746 312 --------------I---WKKTKD---N----VLKMEVQL----AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGAN 363 (437)
Q Consensus 312 --------------l---~~~~~~---~----~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~ 363 (437)
+ .+.+.+ . ...+.... .....++++.++++.|++.+ +++++++.|.++
T Consensus 310 d~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ivv~d~G~ 385 (552)
T 1ovm_A 310 HAARVGDVWFTGIPMNQAIETLVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFI----RPGDIILADQGT 385 (552)
T ss_dssp SEEEETTEEEESCCHHHHHHHHHHHHHTSCCC--------------CCSBCCHHHHHHHHHHHC----CTTCEEEECTTH
T ss_pred ChheeCCcccCCccHHHHHHHHHhCcccccchhhhhhhccccccCCCCCccCHHHHHHHHHHhc----CCCCEEEECCch
Confidence 1 111111 0 00011000 01123455556666666555 889999988554
Q ss_pred HHHHHHHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 364 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..+.. .++...++++++.++++|+||+++|+|+|++++.|+++||+++|||+|+|++|||+|++++++|++.|
T Consensus 386 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~iv 458 (552)
T 1ovm_A 386 SAFGA-IDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIIL 458 (552)
T ss_dssp HHHHH-TTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEE
T ss_pred HHHHH-HhcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEE
Confidence 44543 34566778899999999999999999999999999999999999999999999999999999998754
No 21
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=1.1e-75 Score=612.77 Aligned_cols=413 Identities=12% Similarity=0.091 Sum_probs=311.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh-CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|||++|
T Consensus 6 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N 85 (556)
T 3hww_A 6 FNRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVAN 85 (556)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHT
T ss_pred hhhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHh
Confidence 45899999999999999999999999999999999975 57999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCc------hHHHHHHHHHHhhcCCCc
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPG 164 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~~~~G 164 (437)
+++||++||.+++|||+|||++++...+++.+|++||..+++++|||++++.++++ +++.+++|+ .++|||
T Consensus 86 ~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~G 162 (556)
T 3hww_A 86 LYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAG 162 (556)
T ss_dssp THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSS
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCC
Confidence 99999999999999999999999999999999999999999999999999999975 778888887 358999
Q ss_pred eeEEEcCcchhcc-ccchhHHHHHHHH-hhh-hcccccCCCCCHHHH-HHHHHHHHhCCCcEEEEcCCcCccchHHHHHH
Q 013746 165 GCYLDLPTDVLHQ-TISVSEAEKLLKE-AES-AKETVTQGGIVNSDI-DKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (437)
Q Consensus 165 Pv~l~iP~dv~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~ 240 (437)
||||+||.|+... +.+.... ..+.. ... ....+....++...+ ++++++|.+||||+|++|.+ ++++.+++++
T Consensus 163 PV~i~iP~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~a~~~l~~ 239 (556)
T 3hww_A 163 GVHINCPFAEPLYGEMDDTGL-SWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRM--SAEEGKKVAL 239 (556)
T ss_dssp CEEEEEECCSCCSCCCSSTTH-HHHHTTGGGGGCCSCSSCCCCCCCCCCCTTHHHHTTSCEEEEECBC--CHHHHHHHHH
T ss_pred CEEEeCCcCCCCCCCcccccc-ccccccccccccccccccccccccchhhhhhhhccCCCeEEEECCC--ChHHHHHHHH
Confidence 9999999985433 3322110 00000 000 000011111111122 34566788999999999974 4678999999
Q ss_pred HHHHhCCCeeeCCC-CCCCCCCCCCCcccH-HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH--------
Q 013746 241 LVESTGIPFLPTPM-GKGLLPDTHPLAATA-ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD-------- 310 (437)
Q Consensus 241 lae~~g~pv~tt~~-gkg~~~~~hp~~~G~-~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd-------- 310 (437)
|+|++|+||++|++ +||.++++||+++|. ..++++++||+||+||+++++..+.++...+.+ .++||||
T Consensus 240 lae~~~~PV~~t~~~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~ 318 (556)
T 3hww_A 240 WAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEP-EEYWIVDDIEGRLDP 318 (556)
T ss_dssp HHHHHTCCEEECTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCC-SEEEEEESSCSCCCT
T ss_pred HHHhcCCEEEEccCCCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCC-CeEEEECCCCccCCC
Confidence 99999999999975 899999999999994 567889999999999999986544333222333 3889887
Q ss_pred -------------hHHhhhhh--------hHHHHH----HHHhccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchHH
Q 013746 311 -------------AIWKKTKD--------NVLKME----VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 365 (437)
Q Consensus 311 -------------~l~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~ 365 (437)
...+.+.+ ....++ ........++++.++++.|.+ .+|++++++.+.+...
T Consensus 319 ~~~~~~~i~~d~~~~l~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~iv~~g~~~~~ 394 (556)
T 3hww_A 319 AHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICD----YLPEQGQLFVGNSLVV 394 (556)
T ss_dssp TCCSEEEEESCHHHHHHHSCCCCCCCCCSSHHHHHHHHHHHHHTTCCSSSHHHHHHTGGG----TCCTTCEEEECSSHHH
T ss_pred CCCceEEEEcCHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHH----hCCCCCeEEEeCCcHH
Confidence 01111100 011111 111122345665555555544 4499998876533222
Q ss_pred HHHHHhhhhcCCCeeecC-CCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 366 DVGRAVLVQTEPRCRLDA-GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
.....+........++.+ +++|.||+ +|+|+|++++ |+++||+++|||||+|++|||+|++|+++|++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~iv 465 (556)
T 3hww_A 395 RLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPLVLI 465 (556)
T ss_dssp HHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCSSCEEEE
T ss_pred HHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccCCCcEEE
Confidence 111111111223345554 56777888 9999999999 7999999999999999999999999999998754
No 22
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=3.7e-75 Score=610.96 Aligned_cols=410 Identities=17% Similarity=0.223 Sum_probs=329.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhC-CCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 90 (437)
..++++++|++.|+++||++|||+||+++++|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 23 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N 101 (570)
T 2vbf_A 23 SMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELS 101 (570)
T ss_dssp -CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHH
Confidence 347999999999999999999999999999999999864 7999999999999999999999999 99999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEecCCCccCCCCCC--CC-----Cc-chhhhccCccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQ-----EL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 91 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q-----~~-d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+++||++||.+++|||+|+|+++....+++. +| ++ ||..+++++|||++++++ +++++.+++|++.|.++|
T Consensus 102 ~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~ 180 (570)
T 2vbf_A 102 AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER 180 (570)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999987654432 22 22 488999999999999999 999999999999999886
Q ss_pred CceeEEEcCcchhccccchhHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHH
Q 013746 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~la 242 (437)
|||||+||.|++..+++.... .... ..+...+.+ ++.+++++++|.+|+||+|++|+|+.++++.+++++|+
T Consensus 181 -GPV~l~iP~d~~~~~~~~~~~-~~~~-----~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~la 252 (570)
T 2vbf_A 181 -KPVYINLPVDVAAAKAEKPAL-SLEK-----ESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFV 252 (570)
T ss_dssp -CCEEEEEEHHHHTSBCCCCSS-CCC-----------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHH
T ss_pred -CCEEEEcchhhhcCcccCCcc-cccc-----cCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHH
Confidence 999999999998776543210 0000 000011111 56789999999999999999999999889999999999
Q ss_pred HHhCCCeeeCCCCCCCCCCCCCCcccH--------HHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhHh---
Q 013746 243 ESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDA--- 311 (437)
Q Consensus 243 e~~g~pv~tt~~gkg~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd~--- 311 (437)
|++|+||++|++|||.+|++||+++|. ..+++++++|+||.||+++.+..+..+. .+.++.++|+||.
T Consensus 253 e~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~ 331 (570)
T 2vbf_A 253 SETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFT-HHLDENKMISLNIDEG 331 (570)
T ss_dssp HHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTC-CCCCGGGEEEECSSCE
T ss_pred HHHCCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccc-cCCCCCeEEEEeCCHH
Confidence 999999999999999999999999874 3456789999999999999876654332 2335678999881
Q ss_pred -H-------------HhhhhhhHH--HHHHHH-------hccCCCCCcccHHHHHHHHHhccCCCCCEEEeCcchHHHHH
Q 013746 312 -I-------------WKKTKDNVL--KMEVQL-------AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVG 368 (437)
Q Consensus 312 -l-------------~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~i~~~l~~~~~~~~i~v~~g~~~~~~~ 368 (437)
+ .+.+.+... .|.... .....++++.++++.|++.+ +++++++.|.++..+.
T Consensus 332 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~d~G~~~~~- 406 (570)
T 2vbf_A 332 IIFNKVVEDFDFRAVVSSLSELKGIEYEGQYIDKQYEEFIPSSAPLSQDRLWQAVESLT----QSNETIVAEQGTSFFG- 406 (570)
T ss_dssp EETTEEECSSCHHHHHHTGGGCCSCCCCSCCCCCCCCCCCCCSSBCCHHHHHHHHHHHC----CSSEEEEECTTHHHHH-
T ss_pred HhCCeeecCCCHHHHHHHHHHhccccccccchhhhccccCCCCCCcCHHHHHHHHHHhc----CCCCEEEEeCCHHHHH-
Confidence 1 011110000 000000 00012344455566665554 8899998885544443
Q ss_pred HHhhhhcCCCeeecCCCCCCCcchHHHHHHHhHhCCCCcEEEEEcCccccCCHHHHHHHHHcCcccccC
Q 013746 369 RAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
..++....+++++.++++|+||+++|+|+|+++++|+++||+++|||+|+|++|||+|++++++|++.|
T Consensus 407 ~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~iv 475 (570)
T 2vbf_A 407 ASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICF 475 (570)
T ss_dssp HTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred HHhcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEE
Confidence 334566678899999999999999999999999999999999999999999999999999999998754
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.72 E-value=5e-19 Score=155.70 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCC--Cc--ccHHH-------H-
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP--LA--ATAAR-------S- 272 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp--~~--~G~~~-------~- 272 (437)
...+++++++|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||.||++|| +| +|..+ +
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~ 100 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWP 100 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhh
Confidence 345899999999999999999999999999999999999999999999999999999999 99 88533 3
Q ss_pred --hchhcCCEEEEEcCcC--CCccccCCCCCCCCCceEEEhH
Q 013746 273 --LAIGQCDVALVVGARL--NWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 273 --~~l~~aDlvl~iG~~~--~~~~~~~~~~~~~~~~~~i~vd 310 (437)
+.+++||+||++|+++ +++.+.+ +..+.+ .++|.++
T Consensus 101 ~~~~~~~aDlvl~iG~~~~~~~~~t~~-~~~~~~-~~iI~i~ 140 (170)
T 3cf4_G 101 GLDGNGNYDMIITIGFKKFYINQVLSA-AKNFSN-LKTIAIE 140 (170)
T ss_dssp CSSSSCCCSEEEEESCCHHHHHHHHHH-HHHHCC-CCEEECS
T ss_pred HHHHhhcCCEEEEECCccCcccccccc-ccccCC-CeEEEEC
Confidence 6688999999999999 6654322 122334 6788665
No 24
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.68 E-value=5.9e-17 Score=161.20 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=126.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHh----CCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
..|+|.+++++.+.+.|++++||+||++..++++.+.+ .+++++.++||.+|+.||.|+++..+| +++.|+|||
T Consensus 21 ~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~G 98 (395)
T 1yd7_A 21 DFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGPG 98 (395)
T ss_dssp EEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETTH
T ss_pred EEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCchH
Confidence 35899999999999999999999999999999988753 579999999999999999999999999 555799999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCc-chhhh--cc--CccceeeecCCcCchHHHHHHHHHHhhcCC
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL-DQVEA--VK--PFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~-d~~~~--~~--~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 162 (437)
+.+++.+|.++...++|+++++++.+....+...+++. |.... .+ ++.++.....+++++..++..||+.|...+
T Consensus 99 ~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~ 178 (395)
T 1yd7_A 99 FSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYR 178 (395)
T ss_dssp HHHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999987765554444444 32222 23 667889999999999999999999999876
Q ss_pred CceeEEEcCcchhcc
Q 013746 163 PGGCYLDLPTDVLHQ 177 (437)
Q Consensus 163 ~GPv~l~iP~dv~~~ 177 (437)
.||.+.+|.++.+.
T Consensus 179 -~PVi~~~~~~l~h~ 192 (395)
T 1yd7_A 179 -TPVILLTDAEVGHM 192 (395)
T ss_dssp -SEEEEEECHHHHHC
T ss_pred -CCEEEEcchhHhCe
Confidence 89999999987543
No 25
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.68 E-value=1.2e-18 Score=152.47 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=83.0
Q ss_pred HHHH-HHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCC-CC-C--Cccc--HHHHhch-----
Q 013746 208 IDKA-VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD-TH-P--LAAT--AARSLAI----- 275 (437)
Q Consensus 208 ~~~~-~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~-~h-p--~~~G--~~~~~~l----- 275 (437)
++++ +++|++||||+|++|+ +.++++.+++++|+|+ ++||++|++|+|.||+ +| | +++| ..++...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~ 101 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWK 101 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHhhhhhhh
Confidence 6788 9999999999999999 9888999999999999 9999999999999999 99 8 5666 4444433
Q ss_pred -----hcCCEEEEEcCcCCCccc-cCCCCCCCCCceEEEhH
Q 013746 276 -----GQCDVALVVGARLNWLLH-FGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 276 -----~~aDlvl~iG~~~~~~~~-~~~~~~~~~~~~~i~vd 310 (437)
++|||||++|+|+++..+ .+.+..|.+++++||||
T Consensus 102 ~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 102 GFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp CTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 899999999999973211 12222345678999998
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.91 E-value=4.9e-10 Score=125.14 Aligned_cols=154 Identities=11% Similarity=0.000 Sum_probs=109.8
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHH---hC---C-----CcEeeccchHHHHHHHHHHHhHhCCcEEE
Q 013746 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV---QL---G-----VRFIAFHNEQSAGYAASAYGYLTGKPGIL 80 (437)
Q Consensus 12 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~---~~---~-----i~~i~~~~E~~A~~~A~gyar~tg~~~v~ 80 (437)
..|+|.++++... ..|++.++++|+++..++.+.+. .. + ..++..-+|.+|..||.|.+.+..|+.
T Consensus 5 ~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~-- 81 (1231)
T 2c42_A 5 MTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT-- 81 (1231)
T ss_dssp EEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE--
T ss_pred EEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh--
Confidence 4589999999987 77999999999999999988774 11 2 388999999999999999998777643
Q ss_pred EEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccce-eeecCCcCchHHHHHHHHHHhh
Q 013746 81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAV 159 (437)
Q Consensus 81 ~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~ 159 (437)
..|++||+.-....|..+...++|+++...+++....+...+.+-++. ++.-.+.| .....+++++..++..||+.|.
T Consensus 82 t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~-~~ar~~G~~vl~pss~QEa~dl~~~Af~lAe 160 (1231)
T 2c42_A 82 TFTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAI 160 (1231)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCchhhH-HHHhcCCcEEEECCCHHHHHHHHHHHHHHHH
Confidence 458999999999999776667899999999886543221111111111 11122223 3334567777778888888777
Q ss_pred cCCCceeEEEc
Q 013746 160 SGRPGGCYLDL 170 (437)
Q Consensus 160 ~~~~GPv~l~i 170 (437)
..+ -||.+..
T Consensus 161 k~~-~PVi~~~ 170 (1231)
T 2c42_A 161 ESN-VPFMHFF 170 (1231)
T ss_dssp HHC-CCEEEEE
T ss_pred HcC-CCEEEEe
Confidence 543 4565443
No 27
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=98.71 E-value=1e-08 Score=107.82 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=49.8
Q ss_pred CCCCCCCcchHHHHHHHhHh----CCCCcEEEEEcCcccc--CCHHHHHHHHHcCcccccC
Q 013746 383 AGTWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 383 ~~~~g~mG~~lpaAiGaala----~p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~~i 437 (437)
..+.|+||+++|+|+|+++| .++++|||++|||+|+ |+.++|.||+++++|++.|
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~I 179 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIV 179 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE
Confidence 45679999999999999999 4899999999999999 7779999999999998754
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.53 E-value=4.3e-08 Score=97.18 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=48.8
Q ss_pred CCCCCcchHHHHHHHhHhCC----CCcEEEEEcCccccCCH--HHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p----~~~vv~i~GDG~f~~~~--~eL~Ta~r~~l~i~~i 437 (437)
..|+||+++|.|+|+++|.+ +++|+|++|||+|+|+. ++|.||.++++|++.|
T Consensus 160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v 218 (400)
T 2bfd_A 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFF 218 (400)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEE
Confidence 35999999999999999987 89999999999999988 9999999999998754
No 29
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.45 E-value=8.9e-08 Score=93.83 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=47.4
Q ss_pred CCCCCCcchHHHHHHHhHhCC----CCcEEEEEcCccccCC-H-HHHHHHHHcCcccccC
Q 013746 384 GTWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFS-A-VEVEVWLSCIIMISSI 437 (437)
Q Consensus 384 ~~~g~mG~~lpaAiGaala~p----~~~vv~i~GDG~f~~~-~-~eL~Ta~r~~l~i~~i 437 (437)
++.|+||+++|.|+|+++|.+ +++|||++|||+|++. . .+|.||+++++|++.|
T Consensus 139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v 198 (368)
T 1w85_A 139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFV 198 (368)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEE
Confidence 457999999999999999974 8999999999999985 3 4799999999998754
No 30
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.43 E-value=1.1e-07 Score=93.49 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=39.3
Q ss_pred CcchHHHHHHHhHhCCCCcEEEEEcCccccCC-HHH-HHHHHHcCcccccC
Q 013746 389 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFS-AVE-VEVWLSCIIMISSI 437 (437)
Q Consensus 389 mG~~lpaAiGaala~p~~~vv~i~GDG~f~~~-~~e-L~Ta~r~~l~i~~i 437 (437)
||+++|+|+|+++..++++||+++|||+|+++ .+| |.||+++++|++.|
T Consensus 150 l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v 200 (367)
T 1umd_A 150 VPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFI 200 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEE
Confidence 44444445555555789999999999999999 899 99999999997643
No 31
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=98.43 E-value=9.3e-08 Score=100.50 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCcccc--CCHHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~~i 437 (437)
+.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.||+++++|++.|
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~v 177 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVI 177 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE
Confidence 4799999999999999995 789999999999999 5677999999999998754
No 32
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.37 E-value=1.7e-07 Score=92.85 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=46.8
Q ss_pred CCCCCcchHHHHHHHhHhC----CCCcEEEEEcCccccCC--HHHHHHHHHcCcccccC
Q 013746 385 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 437 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~----p~~~vv~i~GDG~f~~~--~~eL~Ta~r~~l~i~~i 437 (437)
+.|+||+++|.|+|+++|. +++.|||++|||+|++. .++|.||++|++|++.|
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~V 237 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILN 237 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEE
Confidence 4699999999999999985 58999999999999986 46899999999996543
No 33
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=98.36 E-value=2e-07 Score=91.17 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCCCCcchHHHHHHHhHhCC----CCcEEEEEcCccccCC--HHHHHHHHHcCcccccC
Q 013746 384 GTWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 437 (437)
Q Consensus 384 ~~~g~mG~~lpaAiGaala~p----~~~vv~i~GDG~f~~~--~~eL~Ta~r~~l~i~~i 437 (437)
++.|+||+++|.|+|+++|.+ ++.|||++|||+|++. ..+|.||+++++|++.|
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~v 196 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFI 196 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEE
Confidence 456899999999999999975 8999999999999985 44799999999997653
No 34
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=98.35 E-value=1.7e-07 Score=98.02 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=47.3
Q ss_pred CCCCCcchHHHHHHHhHhCC-----CCcEEEEEcCcccc--CCHHHHHHHHHcCccccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP-----ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 436 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p-----~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~~ 436 (437)
+.|+||+++|+|+|++++.+ +++|+|++|||+|+ |+.++|.+|.++++|.++
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~li 177 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLV 177 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEE
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEE
Confidence 46899999999999999976 78999999999999 888899999999998543
No 35
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=98.34 E-value=3.7e-07 Score=95.43 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCCCCcchHHHHHHHhHhCC-----------CCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p-----------~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.+++||.+
T Consensus 112 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~l 175 (632)
T 3l84_A 112 ATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNF 175 (632)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcE
Confidence 35899999999999999987 89999999999999 88899999999999844
No 36
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.24 E-value=2.8e-07 Score=97.48 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=46.5
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.||.+++||.+
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~l 219 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKL 219 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcE
Confidence 46899999999999999987 88999999999999 67789999999999843
No 37
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=98.22 E-value=3.2e-07 Score=96.51 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.+++||.+
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~l 180 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKL 180 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTE
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeE
Confidence 46999999999999999987 79999999999999 67789999999999844
No 38
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=98.20 E-value=1e-06 Score=92.98 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.+++||.+
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~l 204 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRL 204 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeE
Confidence 45899999999999999986 89999999999999 57789999999999844
No 39
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=98.18 E-value=5e-07 Score=95.58 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 384 GTWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 384 ~~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
.+.|+||+++|+|+|++++.+ +++|+|++|||+|+ |+.++|.||.+++||.+
T Consensus 111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~l 178 (669)
T 2r8o_A 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKL 178 (669)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcE
Confidence 357999999999999999975 88999999999999 77889999999999944
No 40
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.17 E-value=1.6e-05 Score=89.08 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=69.2
Q ss_pred CCCCEEEeC-cchHHHHHHHh---hhhcCCC---eeecCC--CCCCCcchHHH---------------------------
Q 013746 352 SPAPILVSE-GANTMDVGRAV---LVQTEPR---CRLDAG--TWGTMGVGLGY--------------------------- 395 (437)
Q Consensus 352 ~~~~i~v~~-g~~~~~~~~~~---~~~~~~~---~~~~~~--~~g~mG~~lpa--------------------------- 395 (437)
+++.+++.+ |.+.+|.+++. +..+.++ .|.++. +.+.||||+|+
T Consensus 828 g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1231)
T 2c42_A 828 GERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLAAKALESDASGDVKE 907 (1231)
T ss_dssp GGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 777888887 77888877653 1233333 666663 56899999999
Q ss_pred HH--------------------HHhHhCCC----------------CcEEEEEcCc-cccCCHHHHHHHHHcCcccccC
Q 013746 396 CI--------------------AAAIACPE----------------RLVVAVEGDS-GFGFSAVEVEVWLSCIIMISSI 437 (437)
Q Consensus 396 Ai--------------------Gaala~p~----------------~~vv~i~GDG-~f~~~~~eL~Ta~r~~l~i~~i 437 (437)
|| |++|+.|+ ++||+|.||| +|+|++|||.|++++|+||+.|
T Consensus 908 Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~eL~ta~~~~~~v~ii 986 (1231)
T 2c42_A 908 ALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVF 986 (1231)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHHHHHHHHhCCCeEEE
Confidence 99 99998544 8999999999 9999999999999999998764
No 41
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=98.16 E-value=5.6e-07 Score=94.91 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCCCCcchHHHHHHHhHhC--------------CCCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~--------------p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|+|+|++++. ++++|+|++|||+|+ |+.++|.||.+++||.+
T Consensus 116 ~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~l 182 (651)
T 2e6k_A 116 TTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKL 182 (651)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred ccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeE
Confidence 5799999999999999996 389999999999999 67889999999999944
No 42
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.15 E-value=7.1e-07 Score=94.41 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=46.1
Q ss_pred CCCCCcchHHHHHHHhHhC--------------CCCcEEEEEcCcccc--CCHHHHHHHHHcCccc
Q 013746 385 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMI 434 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~--------------p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i 434 (437)
..|+||+++|+|+|++++. ++++|+|++|||+|+ |+.++|.||.+++|+.
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~ 190 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGK 190 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTT
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCc
Confidence 5699999999999999997 689999999999999 7889999999999953
No 43
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.10 E-value=8.6e-07 Score=93.85 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=46.4
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCcccc--CCHHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|.|+|++++.+ +++|+|++|||+|+ |+.++|.+|.+++||.+
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~l 180 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNL 180 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcE
Confidence 46899999999999999965 88999999999999 78889999999999843
No 44
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=97.90 E-value=3.3e-06 Score=89.28 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=45.3
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccccCC--HHHHHHHHHcCcccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMIS 435 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f~~~--~~eL~Ta~r~~l~i~ 435 (437)
..|+||+++|.|+|++++.+ +++|+|++|||+|++. ..+|.+|.+++||.+
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~l 180 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKL 180 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcE
Confidence 56999999999999999964 8899999999999965 677999999999843
No 45
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=96.92 E-value=0.00027 Score=74.59 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCCCCcchHHHHHHHhHhCC-----------------CCcEEEEEcCccccCCH--HHHHHHHHcCcc-ccc
Q 013746 385 TWGTMGVGLGYCIAAAIACP-----------------ERLVVAVEGDSGFGFSA--VEVEVWLSCIIM-ISS 436 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p-----------------~~~vv~i~GDG~f~~~~--~eL~Ta~r~~l~-i~~ 436 (437)
..|++|.++|.|+|+++|.+ +++|+|++|||+++... ..+.+|..++|| ++.
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~ 202 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIV 202 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEE
Confidence 45899999999999999843 68999999999999653 479999999997 543
No 46
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=96.43 E-value=0.0014 Score=70.80 Aligned_cols=49 Identities=20% Similarity=0.061 Sum_probs=43.5
Q ss_pred CCCCCcchHHHHHHHhHhC-----------CCCcEEEEEcCcccc--CCHHHHHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~-----------p~~~vv~i~GDG~f~--~~~~eL~Ta~r~~l~ 433 (437)
..|+||.+++.|+|+++++ ++++|+|++|||++. ++...|..|.+++|+
T Consensus 190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~ 251 (886)
T 2qtc_A 190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLD 251 (886)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCT
T ss_pred cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCC
Confidence 4589999999999999874 478999999999999 667789999999986
No 47
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=96.11 E-value=0.0013 Score=71.07 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=43.2
Q ss_pred CCCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccc--cCCHHH-HHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGF--GFSAVE-VEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f--~~~~~e-L~Ta~r~~l~ 433 (437)
.-+.||+++|.|+|+++|.+ +..|+|++|||+| ++..+| |.+|..+++|
T Consensus 243 n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp 308 (868)
T 2yic_A 243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 308 (868)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTC
T ss_pred CCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCC
Confidence 45889999999999999853 3479999999998 799999 9999999998
No 48
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=95.62 E-value=0.16 Score=48.70 Aligned_cols=117 Identities=8% Similarity=-0.028 Sum_probs=79.2
Q ss_pred CcEeec-cchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH-h----hh----CCCcEEEEecCCCccCCCCCC
Q 013746 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN-G----MI----NTWPIVMISGSCDQKDFGRGD 121 (437)
Q Consensus 52 i~~i~~-~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~-A----~~----~~~Pvl~I~g~~~~~~~~~~~ 121 (437)
-+++.+ -.|+++..+|.|++.. |...++..|.++++.-+...|.+ + |. .++||+++..... . ..-+.
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCcc
Confidence 488875 7999999999999998 44344445788888777777753 3 21 3599998873222 1 12244
Q ss_pred CCCcchhhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 122 FQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
+|......+++.+..+... ..+++++..++..|++ . .+||+|..|..+..
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~----~-~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIE----C-DDPVIFLEPKRLYN 179 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEEEGGGSS
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEEchHhhc
Confidence 6666667888887655444 4466777777777765 2 48999988765544
No 49
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=95.54 E-value=0.066 Score=51.12 Aligned_cols=117 Identities=9% Similarity=-0.061 Sum_probs=77.0
Q ss_pred CcEeecc-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--hh---h----CCCcEEEEecCCCccCCCCCC
Q 013746 52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--GM---I----NTWPIVMISGSCDQKDFGRGD 121 (437)
Q Consensus 52 i~~i~~~-~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~--A~---~----~~~Pvl~I~g~~~~~~~~~~~ 121 (437)
-|++.+- .|++++.+|.|++.. |...++..|.++++.-+...|.+ |+ . .++||+++.. ......+ +.
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~-g~ 126 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHT-PE 126 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCC-CT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCC-CC
Confidence 5788655 999999999999987 54444444788888767777753 32 2 7999998853 1111111 22
Q ss_pred CCCcchhhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 122 FQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
++...+.++++.+..+... ..+++++..++..|++ .++||++-.|..+..
T Consensus 127 ~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 127 LHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp TSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTSS
T ss_pred cccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhcC
Confidence 2222344888888764444 4466777777777775 348999987766643
No 50
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=95.49 E-value=0.096 Score=55.15 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=80.3
Q ss_pred CCcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcch
Q 013746 51 GVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQ 127 (437)
Q Consensus 51 ~i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~ 127 (437)
.=|++. ...|++++.+|.|++...|...++ .|..+.+.-+..+|..+-..+.||+++....... .| . ..+|.+.+
T Consensus 401 p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~~ed 478 (669)
T 2r8o_A 401 AGNYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQ 478 (669)
T ss_dssp TCSEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSH
T ss_pred CCCeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCCHHH
Confidence 346665 558999999999999985654455 4677777777888888888999999996422222 22 2 24788888
Q ss_pred hhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+++.+.....- ..++.++..+ ++.|.....+||+|-+|...
T Consensus 479 la~lr~iP~l~V~~Pad~~E~~~~----l~~a~~~~~~Pv~i~~~r~~ 522 (669)
T 2r8o_A 479 VASLRVTPNMSTWRPCDQVESAVA----WKYGVERQDGPTALILSRQN 522 (669)
T ss_dssp HHHHHTSTTCEEECCSSHHHHHHH----HHHHHHCSSSCEEEECCSSE
T ss_pred HHHhcCCCCCEEEecCCHHHHHHH----HHHHHHhCCCcEEEEeCCCC
Confidence 8999888654322 2333444444 44455444599999999753
No 51
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=95.49 E-value=0.0037 Score=67.93 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=42.8
Q ss_pred CCCCCcchHHHHHHHhHhCCCC---------cEEEEEcCccc--cCCHHH-HHHHHHcCcc
Q 013746 385 TWGTMGVGLGYCIAAAIACPER---------LVVAVEGDSGF--GFSAVE-VEVWLSCIIM 433 (437)
Q Consensus 385 ~~g~mG~~lpaAiGaala~p~~---------~vv~i~GDG~f--~~~~~e-L~Ta~r~~l~ 433 (437)
.-+.+|.++|.|+|+++|.+.+ .|||++|||+| +....| |.+|..+++|
T Consensus 319 ~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp 379 (933)
T 2jgd_A 319 NPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYE 379 (933)
T ss_dssp CCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTC
T ss_pred cCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCC
Confidence 3467899999999999996543 79999999999 888888 9999999999
No 52
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=95.42 E-value=0.0042 Score=68.84 Aligned_cols=48 Identities=13% Similarity=-0.059 Sum_probs=42.4
Q ss_pred CCCCcchHHHHHHHhHhCC--------------CCcEEEEEcCccc--cCCHHH-HHHHHHcCcc
Q 013746 386 WGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGF--GFSAVE-VEVWLSCIIM 433 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p--------------~~~vv~i~GDG~f--~~~~~e-L~Ta~r~~l~ 433 (437)
.+.||.++|.|+|+++|.+ ++.++|++|||+| +...+| |.+|..+++|
T Consensus 489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp 553 (1113)
T 2xt6_A 489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 553 (1113)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTC
T ss_pred CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCC
Confidence 4679999999999998863 3578999999998 899999 9999999998
No 53
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=95.41 E-value=0.064 Score=51.62 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=79.5
Q ss_pred CcEeec-cchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhh---------CCCcEEEEecCCCccCCCCC-
Q 013746 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMI---------NTWPIVMISGSCDQKDFGRG- 120 (437)
Q Consensus 52 i~~i~~-~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~---------~~~Pvl~I~g~~~~~~~~~~- 120 (437)
-|++.+ ..|++++.+|.|++.. |...++..+.+..+.-+.-.|..+-. .++||+++... . ..-+.+
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G-~~g~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G-ASAGVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S-CCSSCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c-CCCCCCc
Confidence 588887 5999999999999987 54445545788888777777775432 79999988763 2 111123
Q ss_pred CC-CCcchhhhccCccceeeec-CCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 121 DF-QELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 121 ~~-q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
.+ |.+| .+++.+..+.... .++.++..++..|++ . ++||+|-.|..+.
T Consensus 139 tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~~~~~~ 188 (341)
T 2ozl_B 139 QHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----D-NNPVVVLENELMY 188 (341)
T ss_dssp GGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEECHHHH
T ss_pred chhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----c-CCCEEEEEChhhh
Confidence 23 5555 7788887655543 466777777777765 2 4999999997653
No 54
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=95.22 E-value=0.099 Score=49.85 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=76.5
Q ss_pred CcEeec-cchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--hh---h----CCCcEEEEecCCCccCCCCCC
Q 013746 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--GM---I----NTWPIVMISGSCDQKDFGRGD 121 (437)
Q Consensus 52 i~~i~~-~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~--A~---~----~~~Pvl~I~g~~~~~~~~~~~ 121 (437)
-|++.+ ..|+++..+|.|++.. |...++..|.++.+.-+.-.|.+ |+ . .++|++++.. ......+ +.
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~-g~ 127 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRG-GH 127 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSC-GG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCC-CC
Confidence 467755 9999999999999987 54444445788887666667754 32 1 7899998864 2111111 22
Q ss_pred CCCcchhhhccCcccee-eecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 122 FQELDQVEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 122 ~q~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
.+......+++.+..+. ....+++++..++.+|++ .++||++-.|..+..
T Consensus 128 ~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 128 HHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp GSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGSS
T ss_pred ccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhcC
Confidence 22223347888887644 344567778888877775 248999987776543
No 55
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=95.14 E-value=0.19 Score=52.69 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=79.1
Q ss_pred CcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC--CCCCCCcchh
Q 013746 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQV 128 (437)
Q Consensus 52 i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~ 128 (437)
=|++. ..-|++++.+|.|.+...|...++. |..+-+.-+...|..+-..+.||+++....... .| -..+|.+.+.
T Consensus 403 ~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~THq~~ed~ 480 (663)
T 3kom_A 403 ANYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG-LGEDGPTHQPIEHV 480 (663)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred CCeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCCcCCHHHH
Confidence 36775 4889999999999998856544544 367777667778877778999999985222111 22 2347888889
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
++++.+...... .|.+..+ +..+++.|....++||+|-+|..
T Consensus 481 a~lr~iPnl~V~--~Pad~~e-~~~~l~~A~~~~~~Pv~ir~~r~ 522 (663)
T 3kom_A 481 PSLRLIPNLSVW--RPADTIE-TMIAWKEAVKSKDTPSVMVLTRQ 522 (663)
T ss_dssp HHHHTSTTCEEE--CCCSHHH-HHHHHHHHHHCSSCCEEEECCSS
T ss_pred HHHhcCCCcEEE--eeCCHHH-HHHHHHHHHHhCCCCEEEEccCc
Confidence 999998764333 3444333 24555556554469999999864
No 56
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=94.95 E-value=0.083 Score=50.83 Aligned_cols=118 Identities=8% Similarity=-0.061 Sum_probs=79.1
Q ss_pred CcEeecc-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH-h----hh----CCC-cEEEEecCCCccCCCCC
Q 013746 52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN-G----MI----NTW-PIVMISGSCDQKDFGRG 120 (437)
Q Consensus 52 i~~i~~~-~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~-A----~~----~~~-Pvl~I~g~~~~~~~~~~ 120 (437)
-|++.+- .|++++.+|.|++...-| .++-.|.++++.-+...|.+ + |. -++ ||+++..... . .+-.
T Consensus 67 ~r~~~~gIaE~~~v~~a~G~A~~G~r-p~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~-~~G~ 143 (342)
T 2bfd_B 67 DRVFNTPLCEQGIVGFGIGIAVTGAT-AIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-V-GHGA 143 (342)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHTTCC-EEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-C-SSCG
T ss_pred CeEEEcCcCHHHHHHHHHHHHHCCCe-eEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-C-CCCc
Confidence 4788775 999999999999998544 45445789988777777752 2 21 133 9999854322 1 1224
Q ss_pred CCCCcchhhhccCcccee-eecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhcc
Q 013746 121 DFQELDQVEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 177 (437)
Q Consensus 121 ~~q~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~ 177 (437)
.+|......+++.+..+. ....+++++..++..|++ . ++||+|-.|..+...
T Consensus 144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~p~~l~r~ 196 (342)
T 2bfd_B 144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----D-KNPCIFFEPKILYRA 196 (342)
T ss_dssp GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----S-SSCEEEEEEGGGTTS
T ss_pred chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEecchhcCC
Confidence 466666677888876544 334466777777777765 2 489999888665443
No 57
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=94.44 E-value=0.1 Score=50.79 Aligned_cols=155 Identities=10% Similarity=-0.112 Sum_probs=85.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEecCCCCh-----HHHHHHHH-hC-CCcEeecc-chHHHHHHHHHHHhHhCCcEEEEE
Q 013746 13 QIDGNTLAAKSLSLFG--ATHMFGVVGIPV-----TSLANRAV-QL-GVRFIAFH-NEQSAGYAASAYGYLTGKPGILLT 82 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~G--v~~vFg~pG~~~-----~~l~~al~-~~-~i~~i~~~-~E~~A~~~A~gyar~tg~~~v~~~ 82 (437)
+++..+++.+.|.+.. -+.|+++..+-- ....+.+. +- .-|++.+- .|++++.+|.|+|.. |...++..
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~ 128 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMA-GLKPVAEI 128 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHC-CCeeEEEe
Confidence 3456666666555442 234554433211 01112222 22 35788654 999999999999987 44444445
Q ss_pred cCChhhHhhHHHHHH-hhhC--------CCcEEEEecCCCccCCCCCC-CCCcchhhhccCccceeeec-CCcCchHHHH
Q 013746 83 VSGPGCVHGLAGLSN-GMIN--------TWPIVMISGSCDQKDFGRGD-FQELDQVEAVKPFSKFAVKA-KDITEVPKCV 151 (437)
Q Consensus 83 t~GpG~~n~~~gi~~-A~~~--------~~Pvl~I~g~~~~~~~~~~~-~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l 151 (437)
|.++.+.-+...|.. +-.. ++||+++..... ..+.+. +|..| .++++.+..+.... .++.++..++
T Consensus 129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg--~~g~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll 205 (369)
T 1ik6_A 129 QFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLL 205 (369)
T ss_dssp CCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------H-HHHHHTCTTCEEECCCSHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC--CCCCCccccccH-HHHHcCCCCcEEEecCCHHHHHHHH
Confidence 788877666666654 2222 899997764332 122233 33344 57888887655544 4666777777
Q ss_pred HHHHHHhhcCCCceeEEEcCcchhc
Q 013746 152 AQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 152 ~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
..|++ .++||+|-.|..+..
T Consensus 206 ~~A~~-----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 206 KAAIR-----GDDPVVFLEPKILYR 225 (369)
T ss_dssp HHHHH-----SSSCEEEEEEGGGSS
T ss_pred HHHHh-----CCCCEEEEEehhhhc
Confidence 77765 248999988877654
No 58
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=94.41 E-value=0.27 Score=51.53 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=77.6
Q ss_pred CcEeec-cchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcchh
Q 013746 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQV 128 (437)
Q Consensus 52 i~~i~~-~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~~ 128 (437)
=|++.+ ..|++++.+|.|++...|...+ ..|+.+.+.-+..+|..+-..+.||+++....... .| . ..+|.+.+.
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~-~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g-~G~dG~tHq~~edl 474 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYRAY-GGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA-LGEDGPTHQPVEHL 474 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEE-EEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCEEE-EEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCcCccccHHHH
Confidence 467764 5899999999999987633333 33556666666777888888899999885222221 22 2 346888888
Q ss_pred hhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 129 EAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 129 ~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+++.+..+..- ..++.++..++..|++ ...+||+|-+|...
T Consensus 475 a~lr~iP~l~V~~Pad~~E~~~~l~~A~~----~~~~Pv~i~~~r~~ 517 (651)
T 2e6k_A 475 MSLRAMPNLFVIRPADAYETFYAWLVALR----RKEGPTALVLTRQA 517 (651)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHH----CCSSCEEEECCSSC
T ss_pred HHhcCCCCcEEEecCCHHHHHHHHHHHHH----cCCCCEEEEEeCCC
Confidence 999988654433 3344555555555544 33589999999753
No 59
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=94.31 E-value=0.59 Score=48.67 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=93.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEec----CCCCh-HHHHHHHHhCCCcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcC
Q 013746 13 QIDGNTLAAKSLSLFG--ATHMFGV----VGIPV-TSLANRAVQLGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVS 84 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~G--v~~vFg~----pG~~~-~~l~~al~~~~i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~ 84 (437)
.++..+++.+.|.+.. =+.|+.+ +++.. ..|.+ +..=|++. ...|++++.+|.|.+.. |...++.+ .
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~---~~~~r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~-~ 392 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSR---KFPDRYFDVAIAEQHAVTFAAGLAIG-GYKPIVAI-Y 392 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHH---HCTTTEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-E
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHH---hCCCceEecCcCHHHHHHHHHHHHHC-CCEEEEEe-h
Confidence 3456666666555442 2346655 44332 33333 22457887 55999999999999997 44334333 7
Q ss_pred ChhhHhhHHH-HHHhhhCCCcEEEEecCCCccCCC-CC-CCCCcchhhhccCccceeee-cCCcCchHHHHHHHHHHhhc
Q 013746 85 GPGCVHGLAG-LSNGMINTWPIVMISGSCDQKDFG-RG-DFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 85 GpG~~n~~~g-i~~A~~~~~Pvl~I~g~~~~~~~~-~~-~~q~~d~~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~ 160 (437)
++.+.-+.-- +..+-..++||+++...... .+ .+ .+|......+++.+..+... ..++.++..++..|++.
T Consensus 393 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~--- 467 (621)
T 2o1s_A 393 STFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHY--- 467 (621)
T ss_dssp TTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHC---
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHc---
Confidence 7777655544 45566789999998844332 23 22 46666667888888655444 34556666666666653
Q ss_pred CCCceeEEEcCcch
Q 013746 161 GRPGGCYLDLPTDV 174 (437)
Q Consensus 161 ~~~GPv~l~iP~dv 174 (437)
.++||+|-.|...
T Consensus 468 -~~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 468 -NDGPSAVRYPRGN 480 (621)
T ss_dssp -CSSCEEEECCSSB
T ss_pred -CCCCEEEEeCCCC
Confidence 2589999999653
No 60
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=94.25 E-value=0.19 Score=52.85 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=76.3
Q ss_pred CcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcchh
Q 013746 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQV 128 (437)
Q Consensus 52 i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~~ 128 (437)
=|++. ...|++++.+|.|++...|...++. +..+-+.-+..+|..+-..+.|++++....... .| . ..+|.+.+.
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g-~G~dG~tHq~~edl 479 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG-VGEDGPTHQPVELV 479 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC-cCCCCcccCCHHHH
Confidence 45664 6789999999999998755444444 355666667778888888899999886221111 22 2 247888888
Q ss_pred hhccCccce-eeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+++.+... .+...++.++..++ +.|.....+||+|-+|..
T Consensus 480 a~lr~iP~l~V~~Pad~~e~~~~l----~~a~~~~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 480 AALRAMPNLQVIRPSDQTETSGAW----AVALSSIHTPTVLCLSRQ 521 (673)
T ss_dssp HHHHHSTTCEEECCSSHHHHHHHH----HHHHHCTTCCEEEECCSS
T ss_pred HHHcCCCCCEEEeCCCHHHHHHHH----HHHHHhCCCeEEEEEcCC
Confidence 999877543 22333444444444 444444469999999865
No 61
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=94.18 E-value=0.21 Score=52.61 Aligned_cols=116 Identities=10% Similarity=0.100 Sum_probs=76.0
Q ss_pred CcEee-ccchHHHHHHHHHHHhHhCCc-EEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcch
Q 013746 52 VRFIA-FHNEQSAGYAASAYGYLTGKP-GILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQ 127 (437)
Q Consensus 52 i~~i~-~~~E~~A~~~A~gyar~tg~~-~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~ 127 (437)
=|++. ...|++++.+|.|++...|.. .++ .+..+-++-+..+|..+-..+.||+++....... .| . ..+|.+.+
T Consensus 409 ~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g-~G~dG~tHq~~ed 486 (680)
T 1gpu_A 409 GRYIRYGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG-VGEDGPTHQPIET 486 (680)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSH
T ss_pred CceecCCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCccCCHHH
Confidence 34553 667999999999999876433 344 3556666666777888778899999986222121 23 2 24788888
Q ss_pred hhhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+++.+...... ..++.++.. +++.|....++||+|-+|..
T Consensus 487 la~lr~iP~l~V~~Pad~~e~~~----~l~~A~~~~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 487 LAHFRSLPNIQVWRPADGNEVSA----AYKNSLESKHTPSIIALSRQ 529 (680)
T ss_dssp HHHHHTSSSCEEECCCSHHHHHH----HHHHHHHCSSCCEEEECCSS
T ss_pred HHHhcCCCCCEEEecCCHHHHHH----HHHHHHHhCCCcEEEEecCC
Confidence 9999988653322 233344444 44555544469999999974
No 62
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=94.00 E-value=1.1 Score=46.68 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=79.5
Q ss_pred CcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-CC-CCCCcchh
Q 013746 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RG-DFQELDQV 128 (437)
Q Consensus 52 i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~~-~~q~~d~~ 128 (437)
=|++. ...|++++.+|.|.+....++ ++..++++++.-+...|..+...+.|++++...... ..| .| .+|.+...
T Consensus 355 ~R~~d~gIaE~~~v~~a~G~A~~G~~~-~~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~-~~G~dG~tH~~~ed~ 432 (616)
T 3mos_A 355 DRFIECYIAEQNMVSIAVGCATRNRTV-PFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGV-SIGEDGPSQMALEDL 432 (616)
T ss_dssp GGEEECCSCHHHHHHHHHHHHGGGCCE-EEEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSG-GGCTTCGGGCBSSHH
T ss_pred CCeEEcCccHHHHHHHHHHHHHcCCCC-EEEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCc-cccCCCCcccCHHHH
Confidence 37775 469999999999999986643 344577888888888988888889999887443222 123 22 46777788
Q ss_pred hhccCccceeeec-CCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
++++.+....... .++.++..+ ++.|... +||++|..|.+
T Consensus 433 a~l~~iP~l~V~~P~d~~e~~~~----l~~a~~~-~gp~~ir~~r~ 473 (616)
T 3mos_A 433 AMFRSVPTSTVFYPSDGVATEKA----VELAANT-KGICFIRTSRP 473 (616)
T ss_dssp HHHHTSTTEEEECCCSHHHHHHH----HHHHHTC-CSEEEEECCSS
T ss_pred HHhcCCCCCEEEecCCHHHHHHH----HHHHHhc-CCCEEEEEeCC
Confidence 9999987654433 244444444 4445544 49999999875
No 63
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=93.85 E-value=0.21 Score=52.11 Aligned_cols=114 Identities=12% Similarity=-0.065 Sum_probs=76.5
Q ss_pred cEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcchhh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQVE 129 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~~~ 129 (437)
|++ ...-|++++.+|.|.+...|...++.+ ..+-+.-+...|..+-..+.||+++....... .| . ..+|.+.+.+
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g-~G~dG~THq~~ed~a 460 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIG-VGEDGPTHQPIEQLS 460 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGSCSSHHH
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcC-CCCCCCCCCCHhHHH
Confidence 555 456899999999999998554444443 55666667777777777899999985322221 22 2 2478888899
Q ss_pred hccCccceeeec-CCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 130 AVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+++.+....... .++.++..++..|++ .++||+|-+|..
T Consensus 461 ~lr~iP~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 461 TFRAMPNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQ 500 (632)
T ss_dssp HHHHSSSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSS
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCC
Confidence 999887644333 344555555555544 359999999875
No 64
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=93.80 E-value=0.25 Score=51.54 Aligned_cols=150 Identities=10% Similarity=0.093 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEec----CCCC-hHHHHHHHHhCCCcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcC
Q 013746 13 QIDGNTLAAKSLSLFG--ATHMFGV----VGIP-VTSLANRAVQLGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVS 84 (437)
Q Consensus 13 ~~~~~~~i~~~L~~~G--v~~vFg~----pG~~-~~~l~~al~~~~i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~ 84 (437)
.++..+++.+.|.+.. =+.|+.+ +++. ...|.+. -.=|++. ...|++++.+|.|.+...-|| ++.+ .
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~---~~~r~~~~gIaE~~~~~~a~G~A~~G~rp-~~~~-~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRV---HPHRYLDVGIAEEVAVTTAAGMALQGMRP-VVAI-Y 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH---CGGGEEECCSCHHHHHHHHHHHHHTTCEE-EEEE-E
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHh---cCcceEeccccHHHHHHHHHHHHHcCCEE-EEEe-c
Confidence 4566666666555442 2346655 4433 2334332 2347786 559999999999999974444 3333 6
Q ss_pred ChhhHhhHHH-HHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcchhhhccCccceeeec-CCcCchHHHHHHHHHHhhc
Q 013746 85 GPGCVHGLAG-LSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVS 160 (437)
Q Consensus 85 GpG~~n~~~g-i~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~ 160 (437)
.+.+.-+.-- +..+-..+.||+++...... .+ . ..+|...+..+++.+..+.... .++.++..++..|++.
T Consensus 396 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~--- 470 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH--- 470 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC---
Confidence 7776555544 44466789999998844332 23 2 2467777788999987655443 3556666666666653
Q ss_pred CCCceeEEEcCcch
Q 013746 161 GRPGGCYLDLPTDV 174 (437)
Q Consensus 161 ~~~GPv~l~iP~dv 174 (437)
++||+|-+|...
T Consensus 471 --~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 471 --DGPFAIRYPRGN 482 (629)
T ss_dssp --SSCEEEECCSSB
T ss_pred --CCCEEEEecCCC
Confidence 499999999753
No 65
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=93.73 E-value=0.34 Score=50.98 Aligned_cols=116 Identities=11% Similarity=0.051 Sum_probs=76.5
Q ss_pred CcEee-ccchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcch
Q 013746 52 VRFIA-FHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQ 127 (437)
Q Consensus 52 i~~i~-~~~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~ 127 (437)
=|++. ...|++++.+|.|++... |...++. |..+.++-+..+|..+-..+.||+++....... .| . ..+|.+.+
T Consensus 414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~-t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq~~ed 491 (675)
T 1itz_A 414 ERNVRFGVREHGMGAICNGIALHSPGFVPYCA-TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQPIEH 491 (675)
T ss_dssp CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSH
T ss_pred CCeEeecccHHHHHHHHHHHHhcCCCCEEEEE-EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcCcHHH
Confidence 35554 558999999999999876 2333433 467777777788888888999999987321111 22 2 24788888
Q ss_pred hhhccCcccee-eecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+++.+.... +...++.++..++ +.|....++||+|-+|..
T Consensus 492 la~lr~iP~l~V~~Pad~~e~~~~l----~~a~~~~~~Pv~i~~~r~ 534 (675)
T 1itz_A 492 LVSFRAMPNILMLRPADGNETAGAY----KVAVLNRKRPSILALSRQ 534 (675)
T ss_dssp HHHHHSSSSCEEECCCSHHHHHHHH----HHHHHCTTSCEEEEECSS
T ss_pred HHHhccCCCeEEEECCCHHHHHHHH----HHHHHhCCCcEEEEecCC
Confidence 89999775433 2333444444444 444444469999999864
No 66
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=93.09 E-value=0.45 Score=50.04 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=74.8
Q ss_pred cEe-eccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-CC-CCCCcchhh
Q 013746 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RG-DFQELDQVE 129 (437)
Q Consensus 53 ~~i-~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~~-~~q~~d~~~ 129 (437)
|++ ...-|++++.+|.|.|...|...++- |..+-.+-+-.++..+-..+.||+++....... .| .| .+|.+.+.+
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~ied~a 505 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPIEQLA 505 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCSSHHH
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCHHHHH
Confidence 455 45689999999999999855433443 233333334456666677899999987433221 22 22 478888899
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+++.+...... .|.+.. .+..+++.|.....+||+|-+|..
T Consensus 506 ~lr~iPnl~V~--~Pad~~-E~~~~l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 506 ALRAMPNVSVI--RPADGN-ESVAAWRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp HHHTSTTCEEE--CCSSHH-HHHHHHHHHHHCSSSCEEEECCSS
T ss_pred HHhcCCCCEEE--eeCCHH-HHHHHHHHHHHcCCCCEEEEeecc
Confidence 99999765433 344322 234556666665569999999974
No 67
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=92.79 E-value=0.5 Score=49.88 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=75.1
Q ss_pred CcEee-ccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC-C-CCCCCcchh
Q 013746 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQV 128 (437)
Q Consensus 52 i~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~-~-~~~q~~d~~ 128 (437)
=|++. ..-|++++.+|.|.+...|...++.+ ..+=+.-+...|..+-..+.||+++....... .| . ..+|.+.+.
T Consensus 448 ~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~ed~ 525 (711)
T 3uk1_A 448 GNHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSVEHV 525 (711)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred CcEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCChhHH
Confidence 35664 47799999999999986565555543 44434445566666666899999886322221 22 2 347888889
Q ss_pred hhccCccceeee-cCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
++++.+...... ..++.++..++..|++ .++||||-+|..
T Consensus 526 a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 526 ASLRLIPNLDVWRPADTVETAVAWTYAVA-----HQHPSCLIFSRQ 566 (711)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEECCSS
T ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh-----cCCCEEEEeeCC
Confidence 999999764443 3345556555555554 359999999864
No 68
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=92.76 E-value=0.65 Score=48.88 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=76.1
Q ss_pred cEee-ccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCC--CCCCCCcchhh
Q 013746 53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVE 129 (437)
Q Consensus 53 ~~i~-~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~ 129 (437)
|++. ..-|++++.+|.|.+...|...++- |..+=+.-+...|..+-..+.||+++....... .| -..+|.+.+.+
T Consensus 433 R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq~ied~a 510 (700)
T 3rim_A 433 RTLHFGVREHAMGAILSGIVLHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQPIEHLS 510 (700)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTSCSSHHH
T ss_pred ceeecCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccCChhHHH
Confidence 6664 5789999999999999855444443 333433445666777778899999986322221 22 23478888999
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCC--ceeEEEcCcc
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP--GGCYLDLPTD 173 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~--GPv~l~iP~d 173 (437)
+++.+...... .|.+. ..+..+++.|...+. |||+|-+|..
T Consensus 511 ~lr~iPnl~V~--~Pad~-~e~~~~l~~Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 511 ALRAIPRLSVV--RPADA-NETAYAWRTILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp HHHTSTTCEEE--CCSSH-HHHHHHHHHHHTTTTCSSCEEEECCSS
T ss_pred HHhcCCCCEEE--eCCCH-HHHHHHHHHHHHccCCCCCEEEEeccc
Confidence 99998764433 34432 223455666666554 7999999864
No 69
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=92.51 E-value=0.066 Score=44.92 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
.++++++|..|++.+|+-|.|..-+++.-.+.+|++.|
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L 50 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 50 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999987777776677666665
No 70
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=92.46 E-value=0.074 Score=44.77 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
..++++++|..|++.+|+-|.|..-+++.-.+.+|++.|
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L 49 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 49 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999987777777777766665
No 71
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=91.99 E-value=0.079 Score=45.59 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
..++++++|..|++.+|+-|.|..-+++.-.+.+|+++|
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L 72 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 72 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHH
Confidence 357889999999999999999987777776677666665
No 72
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=91.98 E-value=0.087 Score=56.22 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=30.0
Q ss_pred CCCCcchHHHHHHHhHhCCCCcEEEEEcCcc
Q 013746 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSG 416 (437)
Q Consensus 386 ~g~mG~~lpaAiGaala~p~~~vv~i~GDG~ 416 (437)
.|++|+|++.|+|+++.+|+.+|.|++|||.
T Consensus 174 tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe 204 (845)
T 3ahc_A 174 GGELGYALSHAYGAVMNNPSLFVPCIIGDGE 204 (845)
T ss_dssp CSSTTCHHHHHHHHHTTCTTCEEEEEEETTG
T ss_pred CCCccchHhHHhhhhhcCCCCeEEEEECCCc
Confidence 5899999999999999999999999999999
No 73
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=91.91 E-value=0.075 Score=45.60 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
..++++++|..|++.+|+-|.|..-+++.-.+.+|+++|
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L 73 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 73 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHH
Confidence 457789999999999999999987777776677666665
No 74
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=91.51 E-value=0.21 Score=51.35 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=72.3
Q ss_pred CCcEeeccchHH---HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-C--------
Q 013746 51 GVRFIAFHNEQS---AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G-------- 118 (437)
Q Consensus 51 ~i~~i~~~~E~~---A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~-------- 118 (437)
+.+++..+--.+ ..-+|.|.+.+.+++.+|++-=| ++.-.+..|..|...+.|+++|.-+...... +
T Consensus 406 ~~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~ 484 (556)
T 3hww_A 406 GYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSE 484 (556)
T ss_dssp TCCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC-------------
T ss_pred CceEEecCcccccccHHHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchh
Confidence 456665442211 14567788777788877765333 2333466788899999999988765442110 0
Q ss_pred C----CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 119 R----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 119 ~----~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+ ...+..|...+.+.+--..+++.+++++ ++|++.+... +||+.|++..|
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~al~~a~~~-~gp~liev~~~ 538 (556)
T 3hww_A 485 RERFYLMPQNVHFEHAAAMFELKYHRPQNWQEL----ETAFADAWRT-PTTTVIEMVVN 538 (556)
T ss_dssp ----CCCCCCCCSHHHHHHTTCEEECCSSHHHH----HHHHHHHTTS-SSEEEEEEECC
T ss_pred HHHhccCCCCCCHHHHHHHcCCcEEecCCHHHH----HHHHHHHHhC-CCCEEEEEECC
Confidence 0 1123456677777776667778776655 4555555554 49999999876
No 75
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=91.05 E-value=0.44 Score=46.21 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHHHHHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCC--CCCCCcchhhhccCc
Q 013746 63 AGYAASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPF 134 (437)
Q Consensus 63 A~~~A~gyar~t---g~~~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~ 134 (437)
..-+|.|.+++. +.-.++++..|=|.++. .-++..|...+.|+|+|.-+........ ......|...+++.+
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~ 226 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAA 226 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGT
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHC
Confidence 344566766653 22234444457777763 2367778889999999985542111100 011123445566666
Q ss_pred cceeeecC--CcCchHHHHHHHHHHhhcCCCceeEEEcCcchhc
Q 013746 135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (437)
Q Consensus 135 ~k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~ 176 (437)
--...+|+ +++++...+++|++.+..+. ||+.|++-.+-..
T Consensus 227 G~~~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~r~~ 269 (368)
T 1w85_A 227 GIPGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETLCFRYG 269 (368)
T ss_dssp TCCEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECCCSS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEeeccC
Confidence 54455665 67788888888888877664 8999998776544
No 76
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=90.45 E-value=0.067 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHh
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~ 245 (437)
...++++++|..|++.+|+-|.|..-+.+.-.+.+|++.|
T Consensus 18 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L 57 (186)
T 2bru_C 18 ITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKL 57 (186)
T ss_dssp --CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999987777776666666655
No 77
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=90.37 E-value=0.59 Score=47.84 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=75.4
Q ss_pred CCcEeeccch---HHHHHHHHHHHhHh-CCcEEEEEcCChhh-HhhHHHHHHhhhCCCcEEEEecCCCccCC--------
Q 013746 51 GVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPGC-VHGLAGLSNGMINTWPIVMISGSCDQKDF-------- 117 (437)
Q Consensus 51 ~i~~i~~~~E---~~A~~~A~gyar~t-g~~~v~~~t~GpG~-~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-------- 117 (437)
.-+++....- ..+.-+|.|.+.+. +++.+|++ |=|. .-.+..+..|...+.|+++|.-+......
T Consensus 396 ~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~--GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~ 473 (549)
T 3eya_A 396 KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMC--GDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAG 473 (549)
T ss_dssp SCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEE--EHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCCCC-------
T ss_pred CCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEE--ccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhc
Confidence 3456543322 23455678887775 67766665 4333 33367888899999998888754432210
Q ss_pred CC----CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 118 GR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 118 ~~----~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
+. ..++..|...+++.+--...++.+++++.+.+++|++ . +||+.|++..|-.
T Consensus 474 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~----~-~gp~liev~~~~~ 530 (549)
T 3eya_A 474 GYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFS----I-DGPVLVDVVVAKE 530 (549)
T ss_dssp -----CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHH----S-SSCEEEEEEBCCC
T ss_pred CCCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeccc
Confidence 00 1123457777888776667789999888777776654 2 4899999987743
No 78
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=89.25 E-value=0.78 Score=47.15 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=69.5
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCCCcEEEEecCCCcc-C-CC-C---CC-----CCCcchhhh
Q 013746 63 AGYAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINTWPIVMISGSCDQK-D-FG-R---GD-----FQELDQVEA 130 (437)
Q Consensus 63 A~~~A~gyar~tg~~~v~~~t~GpG~~n-~~~gi~~A~~~~~Pvl~I~g~~~~~-~-~~-~---~~-----~q~~d~~~~ 130 (437)
+.-+|.|.+.+.+++.+|++ |=|... .+..+..|...+.|+++|.-+.... . .. + +. .+..|...+
T Consensus 431 ~l~~AiGaala~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 508 (568)
T 2c31_A 431 GMGYCVAAAAVTGKPVIAVE--GDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMM 508 (568)
T ss_dssp HHHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHH
T ss_pred cHHHHHHHHhCCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHH
Confidence 34456676666778777765 444333 2667888999999999888655431 1 10 0 00 234577778
Q ss_pred ccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 131 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
++.+--...++.+++++.+.+++|++ . .||+.|++..|-
T Consensus 509 a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~~~~ 547 (568)
T 2c31_A 509 MEAFGGKGYVANTPAELKAALEEAVA----S-GKPCLINAMIDP 547 (568)
T ss_dssp HHTTTCEEEEESSHHHHHHHHHHHHH----H-TSCEEEEEEBCT
T ss_pred HHHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEecc
Confidence 88887677888887777777766653 2 489999998773
No 79
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=88.42 E-value=0.7 Score=47.75 Aligned_cols=110 Identities=10% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC----------CC-CC-CCCcchhh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------GR-GD-FQELDQVE 129 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----------~~-~~-~q~~d~~~ 129 (437)
+.-+|.|.+.+. +++.+|++-=|- +.-.+.++..|...+.|+++|.-+...... .+ +. ++..|...
T Consensus 418 ~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~ 496 (590)
T 1v5e_A 418 AIPGGLGAKNTYPDRQVWNIIGDGA-FSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAK 496 (590)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHH
T ss_pred hHHHHHHHHHhCCCCeEEEEEechH-HhchHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHH
Confidence 344567777664 566666653332 333357888899999998888744422111 00 00 23457777
Q ss_pred hccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 130 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
+++.+--...++.+++++.+.+++|++.+.. .||+.|++..+-.
T Consensus 497 ~a~a~G~~~~~v~~~~el~~al~~a~~~~~~--~gp~liev~~~~~ 540 (590)
T 1v5e_A 497 IAEAQGAKGFTVSRIEDMDRVMAEAVAANKA--GHTVVIDCKITQD 540 (590)
T ss_dssp HHHHTTSEEEEECBHHHHHHHHHHHHHHHHT--TCCEEEEEECCSC
T ss_pred HHHHcCCEEEEECCHHHHHHHHHHHHHhcCC--CCCEEEEEEeccc
Confidence 8888876777888888888888887765443 4899999887643
No 80
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=88.38 E-value=0.83 Score=46.92 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=70.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhh-HhhHHHHHHhhhCCCcEEEEecCCCccCC---------C--C-CCCCCcchh
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGC-VHGLAGLSNGMINTWPIVMISGSCDQKDF---------G--R-GDFQELDQV 128 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~-~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~--~-~~~q~~d~~ 128 (437)
+.-+|.|.+.+. +++.+|++ |=|. .-.+.++..|...+.|+++|.-+...... + . ..++..|..
T Consensus 425 ~l~~AiGaala~~~~~vv~i~--GDG~~~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 502 (566)
T 1ozh_A 425 ALPWAIGAWLVNPERKVVSVS--GDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFK 502 (566)
T ss_dssp HHHHHHHHHHHSTTSEEEEEE--EHHHHHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHH
T ss_pred hHHHHHHHHHhCCCCCEEEEE--cChHHhccHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHH
Confidence 445677777765 46666655 4433 33356888899999999988765532210 0 0 123446788
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+++.+--...++.+++++.+.+++|++ . .||+.|++..+
T Consensus 503 ~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~liev~~~ 542 (566)
T 1ozh_A 503 AYAESFGAKGFAVESAEALEPTLRAAMD----V-DGPAVVAIPVD 542 (566)
T ss_dssp HHHHTTTSEEEECCSGGGHHHHHHHHHH----S-SSCEEEEEEBC
T ss_pred HHHHHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeC
Confidence 8888887777889998888777777753 2 48999998876
No 81
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=86.94 E-value=0.68 Score=45.44 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=63.2
Q ss_pred HHHHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCC--CCC-CCcchhhhccCcc
Q 013746 65 YAASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDF-QELDQVEAVKPFS 135 (437)
Q Consensus 65 ~~A~gyar~t---g~~~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~-q~~d~~~~~~~~~ 135 (437)
-+|.|.+++. +.-.++++..|=|.++. .-++..|...++|+|+|.-+........ ... ...|....++.+-
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G 267 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCG 267 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcC
Confidence 3456666543 22223344446666653 4578888889999988875432111100 001 1123334455554
Q ss_pred ceeeecC--CcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 136 KFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 136 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
-...+|+ +++++.+.+++|++.+..+. ||+.|++-.+-
T Consensus 268 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~R 307 (407)
T 1qs0_A 268 IASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEWVTYR 307 (407)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEeec
Confidence 4455665 56678888888888877764 89999987653
No 82
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=86.89 E-value=1.4 Score=45.70 Aligned_cols=113 Identities=8% Similarity=-0.089 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccC---------CCC--------CC
Q 013746 60 EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR--------GD 121 (437)
Q Consensus 60 E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~--------~~ 121 (437)
-..+.-+|.|.+.+. +++.+|++-=|- +.-.+.+|..|...+.|+++|.-+..... .+. +.
T Consensus 444 ~G~~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (616)
T 2pan_A 444 LGWTIPAALGVCAADPKRNVVAISGDFD-FQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENI 522 (616)
T ss_dssp TTCHHHHHHHHHHHCTTCEEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCT
T ss_pred ccchHHHHHHHHHhCCCCcEEEEEcchh-hhCCHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccccccc
Confidence 333666788888775 466565553222 33336688899999999987775443211 000 11
Q ss_pred CC------CcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 122 FQ------ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 122 ~q------~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
.+ ..|...+++.+--...++.+++++.+.+++|++.+... .||+.|++..+-
T Consensus 523 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~gp~lIev~~~~ 580 (616)
T 2pan_A 523 NSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQY-RVPVVVEVILER 580 (616)
T ss_dssp TCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHH-CSCEEEEEEBCS
T ss_pred ccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEecc
Confidence 11 25777778887666778999999999999888755443 389999988763
No 83
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.88 E-value=0.56 Score=48.33 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=61.8
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCCCcEEEEecCCCccCC-C-----C---------CCCCCcch
Q 013746 64 GYAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINTWPIVMISGSCDQKDF-G-----R---------GDFQELDQ 127 (437)
Q Consensus 64 ~~~A~gyar~tg~~~v~~~t~GpG~~n-~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~-----~---------~~~q~~d~ 127 (437)
.-+|.|.+. .+++.+|++ |=|... .+..|..|...+.|+++|.-+...... . + +..+..|.
T Consensus 442 l~~AiGaa~-~~~~vv~i~--GDGsf~~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (578)
T 3lq1_A 442 VSSALGASV-VFQPMFLLI--GDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDF 518 (578)
T ss_dssp HHHHHHHTT-TSSSEEEEE--EHHHHHHTGGGGHHHHHTTCCEEEEEECCC-------------------------CCCT
T ss_pred HHHHHHHhc-CCCCEEEEE--chHHHHhhHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCH
Confidence 456777764 477777665 444332 356788888899999988765432111 0 0 01123566
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+.+.+--..+++.+++++.+ |++.|... +||+.|++..|-
T Consensus 519 ~~~a~a~G~~~~~v~~~~el~~----al~~a~~~-~gp~liev~~~~ 560 (578)
T 3lq1_A 519 RFAAAFYDADYHEAKSVDELEE----AIDKASYH-KGLDIIEVKTNR 560 (578)
T ss_dssp HHHHHHTTCEEEECCSHHHHHH----HHHHHTTS-SSEEEEEEC---
T ss_pred HHHHHHcCCceEecCCHHHHHH----HHHHHHhC-CCCEEEEEECCc
Confidence 7777777666788887766554 44445543 599999998773
No 84
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=85.78 E-value=2 Score=44.02 Aligned_cols=104 Identities=10% Similarity=0.108 Sum_probs=68.7
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEecCCCcc--CCC-----CCC------CCCcchh
Q 013746 63 AGYAASAYGYLTGKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQK--DFG-----RGD------FQELDQV 128 (437)
Q Consensus 63 A~~~A~gyar~tg~~~v~~~t~GpG~~-n~~~gi~~A~~~~~Pvl~I~g~~~~~--~~~-----~~~------~q~~d~~ 128 (437)
+.-+|.|.+.+.+++.+|++ |=|.. -.+..+..|...+.|+++|.-+.... ... .+. ....|..
T Consensus 426 ~l~~AiGaa~a~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 503 (564)
T 2q28_A 426 GMGYAIGASVTSGSPVVAIE--GDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYD 503 (564)
T ss_dssp HHHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGG
T ss_pred hHHHHHHHhhcCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHH
Confidence 45567777777788777766 43333 23467888889999999887655431 110 011 1135677
Q ss_pred hhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
.+++.+--...++.+++++.+.+++|++ . .||+.|++..|
T Consensus 504 ~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~~~ 543 (564)
T 2q28_A 504 KLMDAFRGVGYNVTTTDELRHALTTGIQ----S-RKPTIINVVID 543 (564)
T ss_dssp GGGGGGTCEEEEECSHHHHHHHHHHHHH----H-TSCEEEEEEBC
T ss_pred HHHHHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEec
Confidence 7888887667788887777777766653 2 48999998876
No 85
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=85.47 E-value=1.4 Score=42.60 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHHHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCCC-C--CCCcchhhhccCcc
Q 013746 65 YAASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRG-D--FQELDQVEAVKPFS 135 (437)
Q Consensus 65 ~~A~gyar~t---g~~~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~--~q~~d~~~~~~~~~ 135 (437)
-.|.|.+++. |.-.++++..|=|+++. .-++..|-..+.|+|+|.-+... .+... . ....|... +.+-
T Consensus 147 p~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~--ra~g 223 (365)
T 2ozl_A 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYK--RGDF 223 (365)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGG--TTTT
T ss_pred HHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHH--HhCC
Confidence 3456666543 22234444456666663 34678888899999999843311 11100 0 00011111 2221
Q ss_pred ceeeecC--CcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 136 KFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 136 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
--..+|+ +++++.+.+++|+..+..+. ||+.|++-..
T Consensus 224 ~p~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 262 (365)
T 2ozl_A 224 IPGLRVDGMDILCVREATRFAAAYCRSGK-GPILMELQTY 262 (365)
T ss_dssp SCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence 1234454 67888888888888887765 9999998765
No 86
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=84.77 E-value=0.9 Score=46.90 Aligned_cols=117 Identities=11% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCcEeeccc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------
Q 013746 51 GVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------- 117 (437)
Q Consensus 51 ~i~~i~~~~---E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------- 117 (437)
..+++..+. =..+.-+|.|.+.+. +++.+|++-=|- +...+.++..|...+.|+++|.-+......
T Consensus 414 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~ 492 (589)
T 2pgn_A 414 PRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGA-LYYHFNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQF 492 (589)
T ss_dssp TTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHH
T ss_pred CCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHH-HHhhHHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhc
Confidence 456665432 222455677877765 466666653332 333357888999999998888755432110
Q ss_pred CC---CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 118 GR---GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 118 ~~---~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+. ..+...|...+++.+--...++.+++++.+.+++|++ . .||+.|++..+
T Consensus 493 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~liev~~~ 546 (589)
T 2pgn_A 493 GQNNWTEFMNPDWVGIAKAFGAYGESVRETGDIAGALQRAID----S-GKPALIEIPVS 546 (589)
T ss_dssp SSCCSCBCCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHH----H-CSCEEEEEECC
T ss_pred CCCccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEec
Confidence 00 1233457777888877677789999999888888764 2 48999998876
No 87
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=83.65 E-value=2 Score=44.00 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=84.0
Q ss_pred HHHHHHHhc-CCCEEEecC-CCChHHHHHHHHh-CCCcEeeccc---hHHHHHHHHHHHhHh---CCcEEEEEcCChhhH
Q 013746 19 LAAKSLSLF-GATHMFGVV-GIPVTSLANRAVQ-LGVRFIAFHN---EQSAGYAASAYGYLT---GKPGILLTVSGPGCV 89 (437)
Q Consensus 19 ~i~~~L~~~-Gv~~vFg~p-G~~~~~l~~al~~-~~i~~i~~~~---E~~A~~~A~gyar~t---g~~~v~~~t~GpG~~ 89 (437)
.+++.|.+. .=+.++..- |.+.......+.- ..-+++..+. =..+.-+|.|.+.+. +++.+|++-=|- +.
T Consensus 374 ~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~-~~ 452 (563)
T 2uz1_A 374 HASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGS-VG 452 (563)
T ss_dssp HHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHH-HG
T ss_pred HHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHH-Hh
Confidence 344445443 334554443 2222323333332 2345554321 223445677777764 666666653332 33
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCccC---------CCC-C----CCCCcchhhhccCccceeeecCCcCchHHHHHHHH
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQKD---------FGR-G----DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVL 155 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~-~----~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~ 155 (437)
-.+.++..|...+.|+++|.-+..... .+. . .++..|...+++.+--...++.+++++.+.+++|+
T Consensus 453 ~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~ 532 (563)
T 2uz1_A 453 YSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQAL 532 (563)
T ss_dssp GGTTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH
Confidence 345688899999999888775443210 011 1 12446777888888766778888777666666654
Q ss_pred HHhhcCCCceeEEEcCcc
Q 013746 156 ERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 156 ~~a~~~~~GPv~l~iP~d 173 (437)
+ . .||+.|++..+
T Consensus 533 ~----~-~gp~liev~~~ 545 (563)
T 2uz1_A 533 A----H-NRPACINVAVA 545 (563)
T ss_dssp H----S-SSCEEEEEECC
T ss_pred H----C-CCCEEEEEEec
Confidence 3 3 48999999887
No 88
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=83.59 E-value=2.9 Score=40.85 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEecCCCccCCCC--CCCCCcchhhhccCc
Q 013746 65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPF 134 (437)
Q Consensus 65 ~~A~gyar~t-----g~~~v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~ 134 (437)
-+|.|.+++. ++..+|+ .|=|.++. .-++..|-..++|+|+|.-+......+. ..+...|....++.+
T Consensus 169 p~AvG~AlA~~~~~~~~~vv~~--~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 169 PQAVGAAYAAKRANANRVVICY--FGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEE--EETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred cHHHHHHHhhhhhCCCCeEEEE--ECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence 3455665543 3444444 45554432 2567777788899999985542211110 011123455566665
Q ss_pred cceeeecC--CcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 135 ~k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
--...+|+ +++++.+.+++|++.+.... ||+.|++-..-
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-~P~lIe~~tyR 287 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAMTYR 287 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEECCC
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEeee
Confidence 44445554 56678888888888776654 89999987643
No 89
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=81.54 E-value=3.3 Score=42.76 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=68.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEecCCCccCC--------CCC-----CCCCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKDF--------GRG-----DFQELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~-n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------~~~-----~~q~~d~ 127 (437)
+.-+|.|.+... +++.+|++ |=|.. -.+.+|..|...+.|+++|.-+...... +.. .+...|.
T Consensus 425 ~l~~A~Gaala~~~~~vv~~~--GDG~~~~~~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 502 (603)
T 4feg_A 425 GIPGAIAAKLNYPERQVFNLA--GDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDF 502 (603)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCH
T ss_pred hhHHHhhHHHhCCCCcEEEEe--ccHHHhhhHHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCH
Confidence 445677777765 56655554 44433 3355788888999999988765532211 011 1234577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
..+++.+--...++.+++++.+.+++|++. . ..||++|++..+
T Consensus 503 ~~~a~a~G~~~~~v~~~~~l~~al~~a~~~--~-~~gP~lIev~~~ 545 (603)
T 4feg_A 503 SKIADGVHMQAFRVNKIEQLPDVFEQAKAI--A-QHEPVLIDAVIT 545 (603)
T ss_dssp HHHHHHTTCEEEEECBGGGHHHHHHHHHHH--T-TTSCEEEEEECC
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHHh--c-CCCcEEEEEEeC
Confidence 778887766677888888887777776531 3 359999999875
No 90
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=81.45 E-value=2.4 Score=43.23 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=64.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEecCCCccCC-----CC----CCCCCcchhhhc
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKDF-----GR----GDFQELDQVEAV 131 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~-n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-----~~----~~~q~~d~~~~~ 131 (437)
+.-+|.|.+.+. +++.+|++ |=|.. -.+..+..|...+.|+++|.-+...... +. ..++..|...++
T Consensus 413 ~l~~A~G~a~a~~~~~vv~~~--GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a 490 (552)
T 1ovm_A 413 TLAAAFGAQTACPNRRVIVLT--GDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIP 490 (552)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE--EHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGST
T ss_pred HHHHHHHHHHhCCCCcEEEEE--CchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHHH
Confidence 344567777664 46666655 44433 3356788888999998888755432110 11 123445777788
Q ss_pred cCccc----eeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSK----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+-- ...++.+++++. +|++.+... .||+.|++..+
T Consensus 491 ~a~G~~~~~~~~~v~~~~~l~----~al~~a~~~-~gp~liev~~~ 531 (552)
T 1ovm_A 491 QALSLDPQSECWRVSEAEQLA----DVLEKVAHH-ERLSLIEVMLP 531 (552)
T ss_dssp TTSCSSCCEEEEEECBHHHHH----HHHHHHTTC-SSEEEEEEECC
T ss_pred HHhCCCcCCCEEEeCCHHHHH----HHHHHHHhC-CCCEEEEEEcC
Confidence 88765 677887765554 455555544 58999998876
No 91
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=81.26 E-value=1 Score=46.25 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=71.4
Q ss_pred CCcEeecc---chHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------
Q 013746 51 GVRFIAFH---NEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------- 117 (437)
Q Consensus 51 ~i~~i~~~---~E~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~--------- 117 (437)
.-+++... .=..+.-+|.|.+.+. +++.+|++-=|- +.-.+.++..|...+.|+++|.-+......
T Consensus 426 ~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~-~~~~~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~ 504 (573)
T 2iht_A 426 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGG-FHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGH 504 (573)
T ss_dssp TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHH-HHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHH
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHH-HHhHHHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhc
Confidence 34566432 2223555678887764 466666653332 333456888899999998877754432110
Q ss_pred CC-----CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 118 GR-----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 118 ~~-----~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
+. ..+...|...+++.+--...++.+++++.+.+++| ... .||+.|++..+-
T Consensus 505 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a----~~~-~gp~liev~~~~ 561 (573)
T 2iht_A 505 HRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKG----AEL-GRPFLIEVPVNY 561 (573)
T ss_dssp SSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHH----HTS-SSCEEEEEEBCC
T ss_pred CCCcCccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHH----HhC-CCCEEEEEECCC
Confidence 00 12333577778888866677787776655555544 443 589999998774
No 92
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=80.83 E-value=3.2 Score=43.57 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEecCCCccC---------CCC----CCCCCcch
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQ 127 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~-n~~~gi~~A~~~~~Pvl~I~g~~~~~~---------~~~----~~~q~~d~ 127 (437)
+.-+|.|.+.+. +++.+|++ |=|.. -.+..|..|...+.|+++|.-+..... ... ..+...|.
T Consensus 518 ~lpaAiGaalA~p~~~Vv~i~--GDGsf~~~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~ 595 (677)
T 1t9b_A 518 GLPAAIGAQVAKPESLVIDID--GDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDF 595 (677)
T ss_dssp HHHHHHHHHHHCTTSEEEEEE--EHHHHHHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCH
T ss_pred hHHHHHHHHHhCCCCeEEEEE--eehHHhccHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCH
Confidence 455677877764 45555544 44433 235678888899999887775543211 000 11234577
Q ss_pred hhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcch
Q 013746 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 128 ~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv 174 (437)
..+++.+--...++.+++++.+.+++|+ .. .||+.|++..|-
T Consensus 596 ~~la~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~lIev~~~~ 637 (677)
T 1t9b_A 596 IKLAEAMGLKGLRVKKQEELDAKLKEFV----ST-KGPVLLEVEVDK 637 (677)
T ss_dssp HHHHHHTTCEEEEECSHHHHHHHHHHHH----HC-SSCEEEEEEBCS
T ss_pred HHHHHHcCCeEEEECCHHHHHHHHHHHH----HC-CCcEEEEEEecC
Confidence 7888888777778888776666665554 33 489999998764
No 93
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=78.57 E-value=0.71 Score=47.85 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCcEeeccch---HHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC-C-----C--
Q 013746 51 GVRFIAFHNE---QSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G-----R-- 119 (437)
Q Consensus 51 ~i~~i~~~~E---~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~-----~-- 119 (437)
..+++..+.= ..+.-+|.|.+.+.+++.+|++-=|- +.-.+..+..|...+.|+++|.-+...... + +
T Consensus 445 ~~~~~~~~G~~~ig~~l~~AiGaala~~~~vv~i~GDGs-f~~~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~ 523 (604)
T 2x7j_A 445 PFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLS-FYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEK 523 (604)
T ss_dssp CCEEECCTTTCCSSSHHHHHHHHHHHHTSCEEEEEEHHH-HHHTGGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCH
T ss_pred CceEEeCCCcCCcCcHHHHHHHHHhcCCCcEEEEEccHH-HHhHHHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccc
Confidence 4566644321 12445677888777787777663332 222356788888999999888754432211 0 0
Q ss_pred -------CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 120 -------GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 120 -------~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+..+..|...+++.+--...++.+++++ .+|++.|... .||+.|++..|
T Consensus 524 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el----~~al~~a~~~-~gp~liev~~~ 579 (604)
T 2x7j_A 524 THFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEF----KTAYAPQADK-PGLHLIEIKTD 579 (604)
T ss_dssp HHHHHHTTCCCCCCTHHHHHHTTCEEECCSSHHHH----HHHCCCCCSS-CCEEEEEEECC
T ss_pred hhhHhhccCCCCCCHHHHHHHcCCeEEecCCHHHH----HHHHHHHHhC-CCCEEEEEECC
Confidence 1123356667777776666777765554 5555555543 59999999876
No 94
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=78.54 E-value=1.2 Score=45.59 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEecCCCccCCC----C---CCCCCcchhhhccC
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKDFG----R---GDFQELDQVEAVKP 133 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~-n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~----~---~~~q~~d~~~~~~~ 133 (437)
+.-+|.|.+.+. +++.+|++ |=|.. -.+.++..|...+.|+++|.-+....... . ...+..|...+++.
T Consensus 414 ~l~~A~G~ala~~~~~vv~~~--GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a 491 (566)
T 2vbi_A 414 SVPSAFGNAMGSQDRQHVVMV--GDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEV 491 (566)
T ss_dssp HHHHHHHHHHTCTTSEEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEE--cchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHH
Confidence 344567777664 45555554 44433 23467888888999988777544321110 0 11233466666676
Q ss_pred ccc-----eeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 134 FSK-----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 134 ~~k-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+-- ...++.+++++.+.+++| ....+||+.|++..+
T Consensus 492 ~G~~~~~~~~~~v~~~~el~~al~~a----~~~~~gp~liev~~~ 532 (566)
T 2vbi_A 492 FNAGEGHGLGLKATTPKELTEAIARA----KANTRGPTLIECQID 532 (566)
T ss_dssp HHTTTCCCEEEEECSHHHHHHHHHHH----HHCCSSCEEEEEECC
T ss_pred cCCCCCCccEEEeCCHHHHHHHHHHH----HhcCCCcEEEEEEeC
Confidence 654 677788766665555555 433258999998876
No 95
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=78.31 E-value=2.6 Score=42.73 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=83.1
Q ss_pred HHHHHHHh-cCCCEEEec-CCCChHHHHHHHH-hCCCcEeeccc--hHHHHHHHHHHHhHh-CCcEEEEEcCChhh-Hhh
Q 013746 19 LAAKSLSL-FGATHMFGV-VGIPVTSLANRAV-QLGVRFIAFHN--EQSAGYAASAYGYLT-GKPGILLTVSGPGC-VHG 91 (437)
Q Consensus 19 ~i~~~L~~-~Gv~~vFg~-pG~~~~~l~~al~-~~~i~~i~~~~--E~~A~~~A~gyar~t-g~~~v~~~t~GpG~-~n~ 91 (437)
.+++.|.+ ..=+.++.. .|.+.......+. ...-+++..+. =..+.-+|.|.+.+. .++.+|++ |=|. .-.
T Consensus 357 ~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~--GDG~~~~~ 434 (528)
T 1q6z_A 357 TVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVI--GDGSANYS 434 (528)
T ss_dssp HHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEE--EHHHHTTT
T ss_pred HHHHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHhCCCCcEEEEE--CCcHHHhh
Confidence 33444433 333444444 5555443333332 22456666543 112344577777765 46655554 4343 333
Q ss_pred HHHHHHhhhCCCcEEEEecCCCccCC---------CC----CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHh
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA 158 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~~----~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 158 (437)
+.++..|...+.|+++|.-+...... +. ..++..|...+++.+--...++.+++++. +|++.+
T Consensus 435 ~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~----~al~~a 510 (528)
T 1q6z_A 435 ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLK----GSLQEA 510 (528)
T ss_dssp GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHH----HHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHH----HHHHHH
Confidence 67888888899999998855432110 00 11245677778888766667787766554 455555
Q ss_pred hcCCCceeEEEcCcc
Q 013746 159 VSGRPGGCYLDLPTD 173 (437)
Q Consensus 159 ~~~~~GPv~l~iP~d 173 (437)
... +||+.|++..+
T Consensus 511 ~~~-~gp~liev~~~ 524 (528)
T 1q6z_A 511 LSA-KGPVLIEVSTV 524 (528)
T ss_dssp HTC-SSCEEEEEEBC
T ss_pred HHC-CCcEEEEEEec
Confidence 544 58999998765
No 96
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=76.33 E-value=1.8 Score=44.30 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhh-HhhHHHHHHhhhCCCcEEEEecCCCccCC----CC---CCCCCcchhhhccC
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGC-VHGLAGLSNGMINTWPIVMISGSCDQKDF----GR---GDFQELDQVEAVKP 133 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~-~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----~~---~~~q~~d~~~~~~~ 133 (437)
+.-+|.|.+.+. +++.+|++ |=|. .-.+..+..|...+.|+++|.-+...... .. ..++..|...+++.
T Consensus 418 ~l~~A~G~ala~~~~~vv~i~--GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a~a 495 (568)
T 2wvg_A 418 SVPAAFGYAVGAPERRNILMV--GDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEV 495 (568)
T ss_dssp HHHHHHHHHHHCTTSEEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEE--cChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHHHH
Confidence 445577777764 46655554 4443 33356788888899998877754332110 01 12233466667777
Q ss_pred ccc---------eeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 134 FSK---------FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 134 ~~k---------~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+-- ..+++.+.+++.+.+++|++ ...||+.|++..+
T Consensus 496 ~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~----~~~gp~liev~~~ 540 (568)
T 2wvg_A 496 FNGNGGYDSGAGKGLKAKTGGELAEAIKVALA----NTDGPTLIECFIG 540 (568)
T ss_dssp HHCTTSSSCCCCEEEEESBHHHHHHHHHHHHH----CCSSCEEEEEECC
T ss_pred hCCCcccccCCcceEEeCCHHHHHHHHHHHHh----cCCCcEEEEEEcC
Confidence 654 56788776666555555543 2258999998876
No 97
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=76.11 E-value=4.4 Score=41.66 Aligned_cols=109 Identities=9% Similarity=0.039 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCC---------C----CCCC----
Q 013746 61 QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G----RGDF---- 122 (437)
Q Consensus 61 ~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~---------~----~~~~---- 122 (437)
..+.-+|.|.+.+. +++.+|++-=|- +.-.+.++..|...+.|+++|.-+...... + ...+
T Consensus 429 G~~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~ 507 (590)
T 1ybh_A 429 GFGLPAAIGASVANPDAIVVDIDGDGS-FIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPA 507 (590)
T ss_dssp TCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGG
T ss_pred cchHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCccccccccccc
Confidence 33666788888765 466666653232 333456889999999998888754432100 0 0011
Q ss_pred ----CCcchhhhccCccceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchh
Q 013746 123 ----QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (437)
Q Consensus 123 ----q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~ 175 (437)
...|...+++.+--...++.+++++.+.+++| ... .||+.|++..+-.
T Consensus 508 ~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~-~gp~liev~~~~~ 559 (590)
T 1ybh_A 508 QEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTM----LDT-PGPYLLDVICPHQ 559 (590)
T ss_dssp GTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHH----HHS-SSCEEEEEECCTT
T ss_pred cccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHH----HhC-CCCEEEEEEecCC
Confidence 13577777787766667887766665555555 443 4899999887643
No 98
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=75.46 E-value=0.65 Score=42.75 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHHhCCCcEeeccc----------hH-HHHHHHHHHHhHhCCcEEEEE
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHN----------EQ-SAGYAASAYGYLTGKPGILLT 82 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~~~~i~~i~~~~----------E~-~A~~~A~gyar~tg~~~v~~~ 82 (437)
-..+.++.+.+.|.+.|.-.-+.... =+.+.| .+..+.|.... |. .++++ .||.-..|..++ +.
T Consensus 38 evnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L-~~ra~li~G~prp~~Mm~Gld~sfD~v~f-iGYHa~AG~~gv-La 114 (274)
T 1hi9_A 38 EANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKL-HPEADLISGDVKPFSMVEGLDDTFRGALF-LGYHARASTPGV-MS 114 (274)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTS-CTTSEEEEESCCTTGGGTTCCTTCSEEEE-EEECCCTTSSST-TC
T ss_pred HHHHHHHHHHHCCCeEEEEEccCCCcCCcChhHC-CcCeEEEeCCCCCcchhccccCCccEEEE-eecCCCCCCCCc-cC
Confidence 34556788889999999987553221 122222 23455554432 21 22222 233332233333 22
Q ss_pred cC-ChhhHh----------hHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchHHHH
Q 013746 83 VS-GPGCVH----------GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCV 151 (437)
Q Consensus 83 t~-GpG~~n----------~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l 151 (437)
|+ +-...+ ..-.-+-|-.-++||+++||+.......+..+-++.....-+.+..++....+|+.+.+.|
T Consensus 115 HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~e~~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I 194 (274)
T 1hi9_A 115 HSMIFGVRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTISRSAVKCLSPAKRGRLL 194 (274)
T ss_dssp CSSSTTEEEEEETTEEECHHHHHHHHHHHTTCCEEEEEEEHHHHHHHHTTSTTCEEEEEEEEEETTEEEECCHHHHHHHH
T ss_pred CCCccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCCeEEEEeecccccccccCCHHHHHHHH
Confidence 32 111111 1112233556799999999987554332222333333444456677888888999999999
Q ss_pred HHHHHHhhcC
Q 013746 152 AQVLERAVSG 161 (437)
Q Consensus 152 ~~A~~~a~~~ 161 (437)
+++.+.|...
T Consensus 195 ~~aa~~Al~~ 204 (274)
T 1hi9_A 195 TEKTAFALQN 204 (274)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 9988888754
No 99
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=74.65 E-value=13 Score=35.76 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=54.0
Q ss_pred EEcCChhhHhhH---HHHHHhhhCCCcEEEEecCCCccCCCC--CCCCCcchhhhccCccceeeecCC--cCchHHHHHH
Q 013746 81 LTVSGPGCVHGL---AGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPFSKFAVKAKD--ITEVPKCVAQ 153 (437)
Q Consensus 81 ~~t~GpG~~n~~---~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~~k~~~~v~~--~~~~~~~l~~ 153 (437)
++..|=|.++.- -++..|...+.|+++|.-+......+. ......|...+++.+--...+++. +..+.+.+++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 333455555322 257778889999999986543111100 001123445566655444445543 3456677778
Q ss_pred HHHHhhcCCCceeEEEcCcch
Q 013746 154 VLERAVSGRPGGCYLDLPTDV 174 (437)
Q Consensus 154 A~~~a~~~~~GPv~l~iP~dv 174 (437)
|++.+.... ||+.|++-..-
T Consensus 250 A~~~a~~~~-gP~lIe~~t~r 269 (367)
T 1umd_A 250 AVERARRGE-GPSLVELRVYR 269 (367)
T ss_dssp HHHHHHTTC-CCEEEEEECCC
T ss_pred HHHHHHhcC-CCEEEEEEeec
Confidence 888777654 89999986543
No 100
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=74.49 E-value=4.6 Score=41.32 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEecCCCccCC-----CC----CCCCCcchhhhc
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKDF-----GR----GDFQELDQVEAV 131 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~-n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-----~~----~~~q~~d~~~~~ 131 (437)
+.-+|.|.+.+. +++.+|++ |=|.. -.+..+..|...+.|+++|.-+...... +. ..++..|...++
T Consensus 430 ~l~~A~Gaala~~~~~vv~~~--GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a 507 (570)
T 2vbf_A 430 TFPAALGSQIADKESRHLLFI--GDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLP 507 (570)
T ss_dssp HHHHHHHHHHHCTTSEEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHH
T ss_pred hHHHHHHHHHhCCCCcEEEEE--cchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHH
Confidence 344567777765 46655555 44433 2346788888899998888754432210 10 112345666777
Q ss_pred cCccce-----eeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 132 KPFSKF-----AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 132 ~~~~k~-----~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+--. ..++.+++++.+.+++| +.. ..||+.|++..+
T Consensus 508 ~a~G~~~~~~~~~~v~~~~el~~al~~a---~~~-~~~p~liev~~~ 550 (570)
T 2vbf_A 508 ETFGATEDRVVSKIVRTENEFVSVMKEA---QAD-VNRMYWIELVLE 550 (570)
T ss_dssp HHTTCCTTTEEEEEECBHHHHHHHHHHH---HHC-TTSEEEEEEECC
T ss_pred HHcCCCcCCcceEEecCHHHHHHHHHHH---Hhc-CCCcEEEEEEcC
Confidence 776432 67887766655555443 233 358999998876
No 101
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=72.01 E-value=3.7 Score=42.02 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=63.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhh-HHHHHHhhhCCCcEEEEecCCCccCC-----C---CCCCCCcchhhhcc
Q 013746 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHG-LAGLSNGMINTWPIVMISGSCDQKDF-----G---RGDFQELDQVEAVK 132 (437)
Q Consensus 63 A~~~A~gyar~t-g~~~v~~~t~GpG~~n~-~~gi~~A~~~~~Pvl~I~g~~~~~~~-----~---~~~~q~~d~~~~~~ 132 (437)
+.-+|.|.+.+. +++.+|++ |=|.... +..+..|...+.|+++|.-+...... . ...++..|...+++
T Consensus 427 ~l~~A~G~ala~~~~~vv~i~--GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 504 (565)
T 2nxw_A 427 GVPAGIGAQCVSGGKRILTVV--GDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAA 504 (565)
T ss_dssp HHHHHHHHHHHTTTCCEEEEE--EHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTG
T ss_pred cchHHHHHHHhCCCCcEEEEE--echHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHH
Confidence 344577777664 56666554 5554442 34677777889998877754432110 0 01234467778888
Q ss_pred CccceeeecCCcCchHHHHHHHHHHhhcCCCcee-EEEcCcc
Q 013746 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC-YLDLPTD 173 (437)
Q Consensus 133 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv-~l~iP~d 173 (437)
.+--...++.+++++.+.+++|+ .. +||+ .|++..+
T Consensus 505 a~G~~~~~v~~~~el~~al~~a~----~~-~gp~~liev~~~ 541 (565)
T 2nxw_A 505 GMGGDGVRVRTRAELKAALDKAF----AT-RGRFQLIEAMIP 541 (565)
T ss_dssp GGTSEEEEECBHHHHHHHHHHHH----HC-CSSCEEEEEECC
T ss_pred HcCCCEEEeCCHHHHHHHHHHHH----hc-CCCeEEEEEEcc
Confidence 88767778887666655555544 33 4787 8888776
No 102
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=65.77 E-value=6.2 Score=40.21 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=60.9
Q ss_pred HHHHHHHHhHh-C----CcEEEEEcCChhhHh-hHHHHHHhhhCCCcEEEEecCCCccC-----CCC----CCCCCcchh
Q 013746 64 GYAASAYGYLT-G----KPGILLTVSGPGCVH-GLAGLSNGMINTWPIVMISGSCDQKD-----FGR----GDFQELDQV 128 (437)
Q Consensus 64 ~~~A~gyar~t-g----~~~v~~~t~GpG~~n-~~~gi~~A~~~~~Pvl~I~g~~~~~~-----~~~----~~~q~~d~~ 128 (437)
.-+|.|.+.+. . ++.+|++ |=|..+ .+..+..|...+.|++++.-+..... .+. ..++..|..
T Consensus 419 l~~A~Gaala~~~~~~~~~vv~~~--GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~ 496 (563)
T 2vk8_A 419 TGATLGAAFAAEEIDPKKRVILFI--GDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHL 496 (563)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGG
T ss_pred HHHHHHHHHhCcccCCCCCEEEEE--cchHhhccHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHH
Confidence 33456655543 2 5555554 444332 35678888899999888875543211 111 112334666
Q ss_pred hhccCccce---eeecCCcCchHHHHHHHHH-HhhcCCCceeEEEcCcc
Q 013746 129 EAVKPFSKF---AVKAKDITEVPKCVAQVLE-RAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 129 ~~~~~~~k~---~~~v~~~~~~~~~l~~A~~-~a~~~~~GPv~l~iP~d 173 (437)
.+++.+--. .+++.++++ +.+|++ .+.....||+.|++..|
T Consensus 497 ~~a~a~G~~~~~~~~v~~~~e----l~~al~~~a~~~~~~p~liev~~~ 541 (563)
T 2vk8_A 497 SLLPTFGAKDYETHRVATTGE----WDKLTQDKSFNDNSKIRMIEVMLP 541 (563)
T ss_dssp GHHHHTTCSSEEEEEECBHHH----HHHHHTCTTTTSCSSEEEEEEECC
T ss_pred HHHHHhCCCCCcEEEecCHHH----HHHHHHHHHHhCCCCcEEEEEEeC
Confidence 677776433 677777554 455555 45543447999998877
No 103
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=65.60 E-value=42 Score=28.87 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHH--HHHHH------hCCCcEeeccchHHHHHH---HHHH----H----hHhC
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAV------QLGVRFIAFHNEQSAGYA---ASAY----G----YLTG 75 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l--~~al~------~~~i~~i~~~~E~~A~~~---A~gy----a----r~tg 75 (437)
..++.|++.|++.|-=++||+-++..... ...+. +.|++.+....+.+..-+ ..+| . ..-+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 45677788888889999999877655432 22333 357777665433221100 0111 1 1112
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 76 ~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
+--++++.|..| ..+.+.++..|...+.|+|.||+....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s 153 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGG 153 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 222444444444 567788889999999999999987654
No 104
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=63.09 E-value=7.5 Score=30.25 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCc
Q 013746 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGAR 287 (437)
Q Consensus 218 a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~ 287 (437)
-.|.++++++|...+-..+.+++.|+..|+++-....+-+.+. ..+.+.|+||+ |..
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~------------~~~~~~DvvLL-gPQ 62 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY------------DIMGVYDLIIL-APQ 62 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT------------TTGGGCSEEEE-CGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH------------hhccCCCEEEE-ChH
Confidence 3468899999987666778999999999999765432222221 23467898665 543
No 105
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=62.06 E-value=29 Score=29.07 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHH--H------HhCCCcEeeccchHHHHH-----------HHHHHHhHhCC
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANR--A------VQLGVRFIAFHNEQSAGY-----------AASAYGYLTGK 76 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~a--l------~~~~i~~i~~~~E~~A~~-----------~A~gyar~tg~ 76 (437)
.++.+++.|++.+-=++||+-++.......+ + .+.+++.+....+.+-.. ...-+...-++
T Consensus 31 ~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (188)
T 1tk9_A 31 VGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNE 110 (188)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCCC
Confidence 4556666777777667888765544332222 2 123565555432222110 01111211222
Q ss_pred cEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCC
Q 013746 77 PGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSC 112 (437)
Q Consensus 77 ~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~ 112 (437)
--++++.|-.| ..+.+..+..|...+.|++.||+..
T Consensus 111 ~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 23444444444 5677788888999999999999864
No 106
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=61.58 E-value=5.1 Score=37.10 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=24.5
Q ss_pred HhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
...+.+||++|++|+++.-+...+.......+..+|.|+
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN 230 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLIN 230 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEE
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEEC
Confidence 456789999999999987544333222223345566665
No 107
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=60.43 E-value=4.4 Score=31.43 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=40.2
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLN 289 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~ 289 (437)
+|.++++|.|...+-..+.+++.++..|+++-....+-+-+ ...+.++|++| +|..+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~------------~~~~~~~Dvil-~~pqv~ 61 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA------------GEKGQNADVVL-LGPQIA 61 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSST------------THHHHHCSEEE-ECTTSG
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHH------------HhhccCCCEEE-Eccchh
Confidence 46899999999888777899999999999964432222211 12356789665 666554
No 108
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=53.95 E-value=12 Score=29.30 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=26.4
Q ss_pred CCcEEEEcCCcCccc-hHHHHHHHHHHhCCCe
Q 013746 219 KKPLIVFGKGAAYAR-AEGELKKLVESTGIPF 249 (437)
Q Consensus 219 ~rPvil~G~g~~~~~-~~~~l~~lae~~g~pv 249 (437)
+|.++++|.|...+. ....+++.++..|+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 578999999998776 5788999999999985
No 109
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=53.48 E-value=64 Score=26.88 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHH--HHHHHHhCCCcEeecc---chHHHHHHHHHHHhHhCCcEEEEEcCChh-hH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFH---NEQSAGYAASAYGYLTGKPGILLTVSGPG-CV 89 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~~~~i~~i~~~---~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~ 89 (437)
--+.+++.|.+.+-=++||+-++.... +...+..-|+.+.... ++.. .-....+.+ -++++.|-.| ..
T Consensus 28 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~-----~~~~~~~~~-d~~i~iS~sG~t~ 101 (187)
T 3sho_A 28 AIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLT-----ITLANLRPT-DLMIGVSVWRYLR 101 (187)
T ss_dssp HHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHH-----HHHHTCCTT-EEEEEECCSSCCH
T ss_pred HHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHH-----HHHhcCCCC-CEEEEEeCCCCCH
Confidence 346778888887655666664443322 2223445577665544 2321 112233333 3445545555 56
Q ss_pred hhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 90 HGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 90 n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
+.+..+..|...+.|++.||+....
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s 126 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVS 126 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 6777888899999999999986543
No 110
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=53.27 E-value=61 Score=27.27 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHH--HHHHHH------hCCCcEeeccchHHHH--------H---HHHH-HHhHh
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAV------QLGVRFIAFHNEQSAG--------Y---AASA-YGYLT 74 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~------~~~i~~i~~~~E~~A~--------~---~A~g-yar~t 74 (437)
...+.+++.+.+.+-=++||+-++.... +...+. +.|++.+....+.+.. + .+.- -...+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 3467788888888877888886654332 222243 3467666554221110 0 0000 01222
Q ss_pred CCcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCCc
Q 013746 75 GKPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 75 g~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
.+ -++++.|..| ..+.+..+..|...+.++|.||+....
T Consensus 109 ~~-DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AG-DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TT-CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CC-CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 22 2444444444 677888899999999999999987543
No 111
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=52.90 E-value=1.3e+02 Score=26.90 Aligned_cols=151 Identities=6% Similarity=-0.036 Sum_probs=74.4
Q ss_pred CcHHHHHHHHHHhcC--CCEEEecCCCC--------hHHHHHHHHhCCCcEeecc--chHHHHHH-HHHHHhHhCCcEEE
Q 013746 14 IDGNTLAAKSLSLFG--ATHMFGVVGIP--------VTSLANRAVQLGVRFIAFH--NEQSAGYA-ASAYGYLTGKPGIL 80 (437)
Q Consensus 14 ~~~~~~i~~~L~~~G--v~~vFg~pG~~--------~~~l~~al~~~~i~~i~~~--~E~~A~~~-A~gyar~tg~~~v~ 80 (437)
..++..+++.|.+.| -+++.-+-|.. ...+.+++.+.+++++... .....++. +..+-+...++-++
T Consensus 113 ~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 192 (297)
T 3rot_A 113 LLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNII 192 (297)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEE
Confidence 457888999999999 78776665532 2234555666787765433 22222222 22222234467788
Q ss_pred EEcCChhhHhhHHHHHHhhh----CCCcEEEEecCCCccCCCCCCCCCcchhhhccCccceeeecCCcCchH-HHHHHHH
Q 013746 81 LTVSGPGCVHGLAGLSNGMI----NTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVP-KCVAQVL 155 (437)
Q Consensus 81 ~~t~GpG~~n~~~gi~~A~~----~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~v~~~~~~~-~~l~~A~ 155 (437)
++.+...+..++.++.++-. ..+.++-+-+... ....+.......+.. .++.++. ..++.++
T Consensus 193 ~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~~~------------~~~~i~~~~~lttv~-~~~~~~g~~av~~l~ 259 (297)
T 3rot_A 193 FCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKTPN------------TVSLIHKKLVNYVMD-QQPFLMGYLSITQLV 259 (297)
T ss_dssp EESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCCHH------------HHHHHHTTSCCEEEC-CCHHHHHHHHHHHHH
T ss_pred EEcCCcchHHHHHHHHhcCCccCCCceEEEEeCCCHH------------HHHHHHcCCceEEEe-cChHHHHHHHHHHHH
Confidence 88777666666667666654 3454443322110 001111111111211 2333333 3344344
Q ss_pred HHhhcCCCceeEEEcCcchhccc
Q 013746 156 ERAVSGRPGGCYLDLPTDVLHQT 178 (437)
Q Consensus 156 ~~a~~~~~GPv~l~iP~dv~~~~ 178 (437)
+.. .+++-|-++.+|.++...+
T Consensus 260 ~~i-~g~~~~~~i~~~~~~~~~~ 281 (297)
T 3rot_A 260 LMN-RYQLNPVNINTAMAENLYF 281 (297)
T ss_dssp HHH-HHCCCCCCEECCC------
T ss_pred HHH-hCCCCCcccccCceEEecc
Confidence 433 3445688899999887654
No 112
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=52.77 E-value=21 Score=31.64 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCC
Q 013746 202 GIVNSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (437)
Q Consensus 202 ~~~~~~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg 257 (437)
...|.++-+++++|++.+ ||.+++|--+.--++.+.=.+|++..++|.++...-||
T Consensus 155 GNAPTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 155 GNAPTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp CSCHHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred eCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 345778889999997643 89999998776556666666677778899999877777
No 113
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=52.70 E-value=33 Score=37.03 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=63.5
Q ss_pred CcEe-eccchHHH-H---HHHHHHHhHhC--CcEEEEEcCChhhHhhHHHHHHh-hhCCCcEEEEecCCCccCCC-CC-C
Q 013746 52 VRFI-AFHNEQSA-G---YAASAYGYLTG--KPGILLTVSGPGCVHGLAGLSNG-MINTWPIVMISGSCDQKDFG-RG-D 121 (437)
Q Consensus 52 i~~i-~~~~E~~A-~---~~A~gyar~tg--~~~v~~~t~GpG~~n~~~gi~~A-~~~~~Pvl~I~g~~~~~~~~-~~-~ 121 (437)
=|++ ....|+++ + .+|.||+...+ +| +++..+--+..-+.--+..+ .+.+.++++ ++.......+ .| .
T Consensus 562 ~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P-~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l-~~~~~~~~~g~dG~t 639 (886)
T 2qtc_A 562 GQILQEGINELGAGCSWLAAATSYSTNNLPMIP-FYIYYSMFGFQRIGDLCWAAGDQQARGFLI-GGTSGRTTLNGEGLQ 639 (886)
T ss_dssp CCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEE-EEEEEGGGSHHHHHHHHHHHHHTTCCCEEE-EESCSTTTSTTTCTT
T ss_pred CceeeeccCchhhhhHHHHHHHHHHhcCCCceE-EEEEehHHHHHHHHHHHHHHHHHhcCCEEE-EEecCcccCCCCCCc
Confidence 3555 47889996 4 57889988762 44 44333222222222222222 334556555 3332222222 22 4
Q ss_pred CCCcchhhhccCccce-eeecCCcCchHHHHHHHHHHhhcCCCce----eEEEcCcc
Q 013746 122 FQELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSGRPGG----CYLDLPTD 173 (437)
Q Consensus 122 ~q~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~~GP----v~l~iP~d 173 (437)
+|.+....+++.+... .+...++.++..+++.|++.. .|| |++-+|..
T Consensus 640 Hq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~----~gP~~e~v~i~~~r~ 692 (886)
T 2qtc_A 640 HEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM----YGEKQENVYYYITTL 692 (886)
T ss_dssp TCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH----HSTTCCCCEEEEECC
T ss_pred cCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc----CCCCCceEEEEEeCC
Confidence 6777778888888653 333445566666776666543 267 88888753
No 114
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=50.71 E-value=21 Score=30.52 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
+++.+++++++|.++++-++++|.|... .....+.....++|.|+..-... +... .....+.+-|++|+
T Consensus 30 ~~~~i~~~~~~i~~a~~~I~i~G~G~S~-~~A~~~~~~l~~~g~~~~~~~~~-------~~~~---~~~~~~~~~dvvI~ 98 (201)
T 3fxa_A 30 SEEALVKTVEKIAECTGKIVVAGCGTSG-VAAKKLVHSFNCIERPAVFLTPS-------DAVH---GTLGVLQKEDILIL 98 (201)
T ss_dssp CHHHHHHHHHHHHHCSSCEEEECCTHHH-HHHHHHHHHHHHTTCCEEECCHH-------HHTT---TGGGGCCTTCEEEE
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEecHHH-HHHHHHHHHHHhcCCcEEEeCch-------HHHh---hhhhcCCCCCEEEE
Confidence 5678999999999997678999988643 33444555555678888753211 1000 01123567788888
Q ss_pred Ec
Q 013746 284 VG 285 (437)
Q Consensus 284 iG 285 (437)
+-
T Consensus 99 iS 100 (201)
T 3fxa_A 99 IS 100 (201)
T ss_dssp EC
T ss_pred Ee
Confidence 84
No 115
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=50.26 E-value=9.8 Score=27.50 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=39.7
Q ss_pred ccCCcHHHHHH------HHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHHHHHHH
Q 013746 11 NAQIDGNTLAA------KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAA 67 (437)
Q Consensus 11 ~~~~~~~~~i~------~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A 67 (437)
+..|+.+|++. +.|.++|++ .+|+|.+...+|-+++...|++.=....|.++....
T Consensus 4 t~d~tI~eIv~~~P~~~~vf~~~G~~-C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 4 TKDMIIADVLQMDRGTAPIFINNGMH-CLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp CTTSBHHHHHHHCGGGHHHHHHTTCC-CCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCHHHHHHHHHcCCC-CCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34567777664 789999999 889997766778888877777654455555554433
No 116
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=50.19 E-value=4.4 Score=38.81 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
....+++||++|+||+++.-+...+.......+..+|.|+
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN 288 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLIN 288 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEE
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEc
Confidence 3456789999999999987433222211122345666665
No 117
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=49.72 E-value=52 Score=27.70 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHH--HHH------hCCCcEeeccchHHHHH-----------HHHHHHhHhCC
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLAN--RAV------QLGVRFIAFHNEQSAGY-----------AASAYGYLTGK 76 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~--al~------~~~i~~i~~~~E~~A~~-----------~A~gyar~tg~ 76 (437)
.++.+++.+++.+-=++||+-++......- .+. +.+++.+....+.+-.. ........-++
T Consensus 37 ~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2xbl_A 37 VADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNE 116 (198)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCC
Confidence 345555566677666777775554433222 121 23565555432222100 01112221122
Q ss_pred cEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCC
Q 013746 77 PGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 77 ~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
--++++.|-.| ..+.+..+..|...+.|++.||+...
T Consensus 117 ~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 117 GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 22444444444 46777888889999999999998643
No 118
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=48.97 E-value=36 Score=29.09 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
+.+.+++++++|.+++| ++++|.|.... ....+..-..++|.++.... +.+ ...+.+-|++|+
T Consensus 33 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~-------~~~--------~~~~~~~DvvI~ 95 (200)
T 1vim_A 33 DLETVGEMIKLIDSARS-IFVIGAGRSGY-IAKAFAMRLMHLGYTVYVVG-------ETV--------TPRITDQDVLVG 95 (200)
T ss_dssp CHHHHHHHHHHHHHSSC-EEEECSHHHHH-HHHHHHHHHHHTTCCEEETT-------STT--------CCCCCTTCEEEE
T ss_pred CHHHHHHHHHHHhcCCE-EEEEEecHHHH-HHHHHHHHHHhcCCeEEEeC-------Ccc--------ccCCCCCCEEEE
Confidence 56789999999999874 77788775322 22333333355788776532 111 023556788888
Q ss_pred Ec
Q 013746 284 VG 285 (437)
Q Consensus 284 iG 285 (437)
+-
T Consensus 96 iS 97 (200)
T 1vim_A 96 IS 97 (200)
T ss_dssp EC
T ss_pred Ee
Confidence 84
No 119
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=48.59 E-value=13 Score=35.08 Aligned_cols=69 Identities=14% Similarity=0.380 Sum_probs=43.2
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC--CCCCCCCCCCCcccHHHHhchhcCCEEEEEcCc
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDTHPLAATAARSLAIGQCDVALVVGAR 287 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~--gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~ 287 (437)
|.+| +.++-.|+|....+..+.+++||+++|+-|-+|.. -.|.+|.+| .+|..+ ..+..|||-|++|-+
T Consensus 199 l~~A-~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGqTG-k~V~P~~lYiA~GIS 269 (320)
T 1o97_D 199 ITTV-DFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSR--QVGQSG-KVVGSCKLYVAMGIS 269 (320)
T ss_dssp CSCS-SEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBSTTS-BCCTTCSEEEEESCC
T ss_pred cCCC-CEEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChhh--EeecCc-eEecccceEEEEecc
Confidence 3344 34555566666666789999999999998888754 246776653 355332 223344666666644
No 120
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=48.33 E-value=4.6 Score=40.20 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=24.2
Q ss_pred HHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
..+.+++||++|++|+++.-+...+.......++++|.|+
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN 426 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLIN 426 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEE
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEc
Confidence 3456789999999999986543322211122344566665
No 121
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=48.07 E-value=25 Score=27.80 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 19 ~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
.+++.+.+.|++.|.--+|.....+.+.+++.||+++.
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPVI 110 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEEC
Confidence 45677778899999999999888888888889999984
No 122
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=47.58 E-value=16 Score=34.34 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC--CCCCCCCCCCCcccH
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDTHPLAATA 269 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~--gkg~~~~~hp~~~G~ 269 (437)
|.+|+ .++-.|+|....+..+.+++||+++|+-|-+|.. -.|.+|.+| .+|.
T Consensus 194 L~~A~-ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGq 247 (315)
T 1efv_A 194 LTGAK-VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDM--QVGQ 247 (315)
T ss_dssp GGGCS-EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBST
T ss_pred cCCCC-EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHHh--eecc
Confidence 44553 4555566666566788999999999998888754 257777654 4553
No 123
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=46.79 E-value=43 Score=28.38 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHH--HHHHH------HhCCCcEeeccchHHHHHHHH----HH---------HhHh
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTS--LANRA------VQLGVRFIAFHNEQSAGYAAS----AY---------GYLT 74 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al------~~~~i~~i~~~~E~~A~~~A~----gy---------ar~t 74 (437)
..+.+++.|.+.+-=++||+-++.... +...+ .+.|++.+...... ..+.|. ++ ...+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDS-STITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCH-HHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCCh-hHHHHhhcCccHHHHHHHHHHhCCC
Confidence 456666888887766777775544332 22234 23466666543211 111111 11 1122
Q ss_pred CCcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCC
Q 013746 75 GKPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 75 g~~~v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
.+ -++++.|..| ..+.+..+..|...+.|+|.||+...
T Consensus 113 ~~-DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 113 PG-DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp TT-CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CC-CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 22 2444444444 67788889999999999999998643
No 124
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=46.66 E-value=72 Score=28.46 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCC--cEEEEcCCcCccchHHHHHHHHHHhCCCee-eCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 207 DIDKAVSLLKEAKK--PLIVFGKGAAYARAEGELKKLVESTGIPFL-PTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 207 ~~~~~~~~l~~a~r--Pvil~G~g~~~~~~~~~l~~lae~~g~pv~-tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
.+.+|++.|...++ -++++|.. ..+.+.+.++|++.|++.+ +...=.|.+-.-.- ..+...|+|++
T Consensus 52 ~L~~A~~~i~~i~~~~~iLfVgtk---~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t--------~~~~~PdlliV 120 (241)
T 2xzm_B 52 KIKLAARVIAAVQHPEDVMVVCSR---IYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQT--------LKYEEPRVLIV 120 (241)
T ss_dssp HHHHHHHHHHHCSSGGGEEEECCS---HHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTC--------TTCCCCSEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEECC---HHHHHHHHHHHHHhCCEEeccccccCCcccCccc--------cccCCCCEEEE
Confidence 45677777776654 47888753 3467789999999999877 54332343322110 23567899999
Q ss_pred EcCcCC
Q 013746 284 VGARLN 289 (437)
Q Consensus 284 iG~~~~ 289 (437)
+..+-+
T Consensus 121 ~Dp~~e 126 (241)
T 2xzm_B 121 TDPRSD 126 (241)
T ss_dssp SCTTTT
T ss_pred ECCCcc
Confidence 876543
No 125
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.41 E-value=97 Score=28.56 Aligned_cols=72 Identities=11% Similarity=0.191 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEE
Q 013746 207 DIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (437)
Q Consensus 207 ~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (437)
.+..+++.|...+ .-++++|.. ..+.+.+.++|++.|.+.++...--|.+-.-.- ..++..|+|+++
T Consensus 61 ~L~~Aa~~I~~i~~~~~ILfVgTk---~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t--------~~f~ePdllvV~ 129 (305)
T 3iz6_A 61 KLQLAARVIVAIENPQDIIVQSAR---PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ--------TSFSEPRLLILT 129 (305)
T ss_dssp HHHHHHHHHHHTTSSCCEEEECCS---HHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTT--------SCSSCCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCc---HHHHHHHHHHHHHhCCccccCcccCCcccCccc--------ccccCCceeEEe
Confidence 3556666666543 347788753 346788999999999988876443354433211 235789999999
Q ss_pred cCcCC
Q 013746 285 GARLN 289 (437)
Q Consensus 285 G~~~~ 289 (437)
..+-+
T Consensus 130 Dp~~d 134 (305)
T 3iz6_A 130 DPRTD 134 (305)
T ss_dssp CTTTT
T ss_pred Ccccc
Confidence 87654
No 126
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=46.30 E-value=41 Score=29.38 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHhCC-CcEEEEcCCcCccchHHHHHHHHHH-hCCCeeeCCCCCC
Q 013746 203 IVNSDIDKAVSLLKEAK-KPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKG 257 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~-rPvil~G~g~~~~~~~~~l~~lae~-~g~pv~tt~~gkg 257 (437)
..|.++-++++++++.+ ||-+++|--+.--++.+.=.+|.+. .++|.++...-||
T Consensus 139 NAPTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 139 NAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp SCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred CcHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 45778889999998765 9999999877655555555556663 7999999877777
No 127
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=46.26 E-value=16 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=33.4
Q ss_pred HHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC--CCCCCCCCC
Q 013746 215 LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDTH 263 (437)
Q Consensus 215 l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~--gkg~~~~~h 263 (437)
|.+|+ .++-.|+|....+..+.+++||+++|+-|-+|.. -.|.+|.+|
T Consensus 189 L~~A~-ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~ 238 (307)
T 1efp_A 189 LTSAR-RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDW 238 (307)
T ss_dssp TTTCS-EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGGG
T ss_pred cCCCC-EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChhh
Confidence 44443 4555566666556788999999999998888754 256777654
No 128
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=45.39 E-value=1e+02 Score=32.96 Aligned_cols=114 Identities=13% Similarity=0.067 Sum_probs=62.3
Q ss_pred cEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh----hHHH----HHHh-----hhCCC-cEEEEecCCCccCCC
Q 013746 53 RFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH----GLAG----LSNG-----MINTW-PIVMISGSCDQKDFG 118 (437)
Q Consensus 53 ~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n----~~~g----i~~A-----~~~~~-Pvl~I~g~~~~~~~~ 118 (437)
|+|....|++.+.+|.||+.. |+.+.+ .+.++ +.. +... |..+ |+..+ ++.+|...... ..|
T Consensus 492 R~i~GI~Eh~M~gia~Glal~-G~~~f~-~t~at-Fl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si-~~G 567 (845)
T 3ahc_A 492 QVTEQLSEHQCEGFLEAYLLT-GRHGIW-SSYES-FVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVW-RQD 567 (845)
T ss_dssp SEEECSCHHHHHHHHHHHHHT-TCEEEE-EEEHH-HHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGG-GCT
T ss_pred cEeeeecHHHHHHHHHHHHhc-CCCCce-ecchh-hhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCce-eec
Confidence 688899999999999999976 554433 33332 332 3333 3333 22345 46554433322 223
Q ss_pred C-C-CCCCcchhhhccCc---cceeeecCCcCchHHHHHHHHHHhhcCCCceeEEEc-Cc
Q 013746 119 R-G-DFQELDQVEAVKPF---SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL-PT 172 (437)
Q Consensus 119 ~-~-~~q~~d~~~~~~~~---~k~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i-P~ 172 (437)
. | .+|.+.+.++++.. .-=..+|-.|.+..+.. .|++.|...+ +|+|+-+ ..
T Consensus 568 eDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~-~a~~~al~~~-~~~~v~v~sR 625 (845)
T 3ahc_A 568 HNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLL-AISEKCFKST-NKINAIFAGK 625 (845)
T ss_dssp TTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHH-HHHHHHHHCB-SCEEEEECCC
T ss_pred CCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHH-HHHHHHHHcC-CCeEEEEecC
Confidence 2 2 36776555544433 21234444566655544 6777777765 5566555 44
No 129
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=44.63 E-value=71 Score=28.70 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCC--cEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEE
Q 013746 207 DIDKAVSLLKEAKK--PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (437)
Q Consensus 207 ~~~~~~~~l~~a~r--Pvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (437)
.+..|++.|...++ -++++|.. ..+.+.+.++|++.|.+.++...-.|.+-.-.- ..++..|+|+++
T Consensus 56 ~L~~A~~~i~~i~~~~~vlfVgTk---~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t--------~~f~~PdllvV~ 124 (252)
T 3u5c_A 56 KLVLAARIIAAIPNPEDVVAISSR---TFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT--------RSFKEPRLVIVT 124 (252)
T ss_dssp HHHHHHHHHTTSSSGGGEEEEECS---HHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS--------TTCCCCSEEEES
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCC---cHHHHHHHHHHHHhCCceecCcccCCcccChhh--------hhccCCceEEEe
Confidence 35566666665433 47888754 356788999999999988876443354433211 235789999999
Q ss_pred cCcCC
Q 013746 285 GARLN 289 (437)
Q Consensus 285 G~~~~ 289 (437)
..+-+
T Consensus 125 Dp~~d 129 (252)
T 3u5c_A 125 DPRSD 129 (252)
T ss_dssp CTTTT
T ss_pred CCccc
Confidence 87654
No 130
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=44.33 E-value=53 Score=30.35 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~ 267 (437)
+....++++.|...++..+++|... +.....+..++++.++|++........+....++++
T Consensus 60 p~~a~~~a~~li~~~~v~~i~g~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f 120 (353)
T 4gnr_A 60 TAEAASVTTNLVTQSKVSAVVGPAT--SGATAAAVANATKAGVPLISPSATQDGLTKGQDYLF 120 (353)
T ss_dssp HHHHHHHHHHHHHTSCCSEEECCCS--HHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEE
T ss_pred HHHHHHHHHHHHhhCCceEEecccc--CcccceehhhhhccCcceEeecccccccccCCcccc
Confidence 3333444555556677778887654 456677889999999999987665555555555543
No 131
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=43.62 E-value=38 Score=35.95 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
+++++.+++.|++.+ +..++.|.... ....-.+.+|++.+|.+.+........... . +.+. ...=++++|+||
T Consensus 323 deAl~~ia~~L~~i~~~~i~~~~s~~~t-~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~--~-~~~~-~~~di~~ad~Il 397 (783)
T 3i9v_3 323 EEAFLALKEGLKEARGEEVGLYLAHDAT-LEEGLLASELAKALKTPHLDFQGRTAAPAS--L-FPPA-SLEDLLQADFAL 397 (783)
T ss_dssp HHHHHHHHHHHHTCCTTSEEEEECTTCC-TTHHHHHHHHHHHTTCSCEEETTCCSSCGG--G-SCBC-CHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHhhccCCEEEEECCCCC-HHHHHHHHHHHHHhCCCcccCCchhhhhhc--c-CCCC-CHHHHhhCCEEE
Confidence 567888889998764 44555554432 234456889999999887654321111110 0 1111 112357999999
Q ss_pred EEcCcCC
Q 013746 283 VVGARLN 289 (437)
Q Consensus 283 ~iG~~~~ 289 (437)
++| .+.
T Consensus 398 ~~G-Np~ 403 (783)
T 3i9v_3 398 VLG-DPT 403 (783)
T ss_dssp EES-CHH
T ss_pred EeC-Chh
Confidence 999 753
No 132
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=43.40 E-value=9.2 Score=36.07 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHhchhcCCEEEEEcCcCCCcc
Q 013746 271 RSLAIGQCDVALVVGARLNWLL 292 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~ 292 (437)
+...+++||++|++|+++.-+.
T Consensus 214 a~~~~~~aDlllviGTSl~V~P 235 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQP 235 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHH
T ss_pred HHHHHhCCCEEEEEeeCcccHH
Confidence 4457789999999999987543
No 133
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=41.49 E-value=46 Score=36.90 Aligned_cols=96 Identities=7% Similarity=-0.037 Sum_probs=58.4
Q ss_pred CcEEEEEcCChhhH----hhHHHHHHhhhCCCc---EEEEecCCCccCCCCC--CCCCcchhhhccCccceeeecC--Cc
Q 013746 76 KPGILLTVSGPGCV----HGLAGLSNGMINTWP---IVMISGSCDQKDFGRG--DFQELDQVEAVKPFSKFAVKAK--DI 144 (437)
Q Consensus 76 ~~~v~~~t~GpG~~----n~~~gi~~A~~~~~P---vl~I~g~~~~~~~~~~--~~q~~d~~~~~~~~~k~~~~v~--~~ 144 (437)
+..++++..|=|++ ...-++.-|-..+.| +|+|.-+........- .....+..+.++.+---..+|+ ++
T Consensus 521 ~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~ 600 (1113)
T 2xt6_A 521 FSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDP 600 (1113)
T ss_dssp CCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCH
T ss_pred CCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHHHHHHhcCCcEEEEcCCCH
Confidence 45677777888873 445567778888998 9998754321111100 0000111233444433344555 77
Q ss_pred CchHHHHHHHHHHhhcCCCceeEEEcCc
Q 013746 145 TEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (437)
Q Consensus 145 ~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 172 (437)
+.+.+.+++|++.+..+. ||+.|++-.
T Consensus 601 ~av~~a~~~A~~~~r~~~-~PvlIe~~t 627 (1113)
T 2xt6_A 601 EACAWVARLAVDFRQAFK-KDVVIDMLC 627 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcC-CCEEEEEEe
Confidence 888888888888877764 899998853
No 134
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=41.39 E-value=47 Score=27.76 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
.+.+.+++++++|.+++| ++++|.|... .....+.....++|.++..-. +.| ...+.+-|++|
T Consensus 22 l~~~~i~~~~~~i~~a~~-I~i~G~G~S~-~~A~~~~~~l~~~g~~~~~~~-------~~~--------~~~~~~~d~vI 84 (186)
T 1m3s_A 22 ISNEEADQLADHILSSHQ-IFTAGAGRSG-LMAKSFAMRLMHMGFNAHIVG-------EIL--------TPPLAEGDLVI 84 (186)
T ss_dssp CCHHHHHHHHHHHHHCSC-EEEECSHHHH-HHHHHHHHHHHHTTCCEEETT-------STT--------CCCCCTTCEEE
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEecCHHH-HHHHHHHHHHHhcCCeEEEeC-------ccc--------ccCCCCCCEEE
Confidence 357789999999999874 7778887542 233444444466888776531 112 12356778888
Q ss_pred EEc
Q 013746 283 VVG 285 (437)
Q Consensus 283 ~iG 285 (437)
++-
T Consensus 85 ~iS 87 (186)
T 1m3s_A 85 IGS 87 (186)
T ss_dssp EEC
T ss_pred EEc
Confidence 884
No 135
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=41.29 E-value=7.8 Score=27.80 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=36.9
Q ss_pred cCCcHHHHHH------HHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEeeccchHH
Q 013746 12 AQIDGNTLAA------KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQS 62 (437)
Q Consensus 12 ~~~~~~~~i~------~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~~E~~ 62 (437)
..++.+|++. +.|.++|+ ..||+||.....|-+++...|+..=....|.+
T Consensus 7 ~d~tI~eiv~~~P~~~~vf~~~G~-~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 7 KDMTFAQALQTHPGVAGVLRSYNL-GCIGCMGAQNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp SSSBHHHHHHHCTHHHHHHHHTTG-GGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHCHHHHHHHHHcCC-CCCCCCccccccHHHHHHHcCCCHHHHHHHHH
Confidence 4677777665 78999998 57999998888888888888876443333333
No 136
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=41.11 E-value=28 Score=26.75 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.9
Q ss_pred CcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 220 rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
|.++++|.|...+-..+.+++.++..|+++-
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~~ 36 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYAKSKNINAT 36 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHHHHHTCSEE
T ss_pred EEEEECCChHhHHHHHHHHHHHHHHCCCCeE
Confidence 4688999999888667889999999999753
No 137
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=40.49 E-value=1.1e+02 Score=26.70 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEc
Q 013746 207 DIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (437)
Q Consensus 207 ~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (437)
.+.+|++.+.+. ..-++++|.. ..+.+.+.++|++.|++.++...=-|.+-.-. ...+.+.|+++++.
T Consensus 55 ~L~~A~~~i~~i~~~~iLfVgTk---~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~--------~~~f~~PdlliV~D 123 (208)
T 1vi6_A 55 RIRVAAKFLSRYEPSKILLVAAR---QYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM--------LSEYREPEVVFVND 123 (208)
T ss_dssp HHHHHHHHHTTSCGGGEEEEECS---GGGHHHHHHHHHHHCCEEEESSCCTTTTTCTT--------STTCCCCSEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEEeCC---HHHHHHHHHHHHHhCCeeecCEECCCcccChh--------hHhhCCCCEEEEEC
Confidence 355666666554 3447778754 35678899999999999887644334442211 11245678888776
Q ss_pred CcC
Q 013746 286 ARL 288 (437)
Q Consensus 286 ~~~ 288 (437)
.+-
T Consensus 124 p~~ 126 (208)
T 1vi6_A 124 PAI 126 (208)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 138
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=40.33 E-value=18 Score=32.67 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCcc
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYA 232 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~ 232 (437)
+.+++++++|+++++.+++.|.|+..+
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~~ 29 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISAE 29 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSCC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhHh
Confidence 457899999999999999999999644
No 139
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=40.33 E-value=22 Score=28.64 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=24.2
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
+-|.|++-+|. ...+++.++|++.|+||+.|..
T Consensus 74 ~~~~iIlt~g~---~~~~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 74 NVRCLILTGNL---EPVQLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp TEEEEEEETTC---CCCHHHHHHHHHHTCCEEECSS
T ss_pred CCcEEEEcCCC---CCCHHHHHHHHHCCCeEEEECC
Confidence 45555555554 3457788999999999998865
No 140
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=39.49 E-value=13 Score=20.90 Aligned_cols=14 Identities=29% Similarity=0.703 Sum_probs=11.5
Q ss_pred CCCcchHHHHHHHh
Q 013746 387 GTMGVGLGYCIAAA 400 (437)
Q Consensus 387 g~mG~~lpaAiGaa 400 (437)
.++||++++|.|+-
T Consensus 6 ngigyaigyafgav 19 (32)
T 2keg_A 6 NGIGYAIGYAFGAV 19 (32)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCcceeehhhhhHH
Confidence 56899999999973
No 141
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=39.29 E-value=72 Score=34.30 Aligned_cols=97 Identities=7% Similarity=-0.047 Sum_probs=57.7
Q ss_pred CcEEEEEcCChhhH----hhHHHHHHhhhCCCc---EEEEecCCCccCCCCCC--CCCcchhhhccCccceeeecC--Cc
Q 013746 76 KPGILLTVSGPGCV----HGLAGLSNGMINTWP---IVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKFAVKAK--DI 144 (437)
Q Consensus 76 ~~~v~~~t~GpG~~----n~~~gi~~A~~~~~P---vl~I~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~~~~v~--~~ 144 (437)
+..++++..|=|+. +..-++.-|-..+.| +|+|.-+.......... ...-+....++.+---..+|+ ++
T Consensus 276 ~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~ 355 (868)
T 2yic_A 276 FSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDP 355 (868)
T ss_dssp CCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCH
T ss_pred CCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCH
Confidence 45677777788873 445567778888998 99987644211111000 000111223344333344444 67
Q ss_pred CchHHHHHHHHHHhhcCCCceeEEEcCcc
Q 013746 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (437)
Q Consensus 145 ~~~~~~l~~A~~~a~~~~~GPv~l~iP~d 173 (437)
+.+.+.+++|++.+.... |||.|++-..
T Consensus 356 ~av~~a~~~A~~~ar~~~-~PvlIe~~ty 383 (868)
T 2yic_A 356 EACAWVARLAVDFRQAFK-KDVVIDMLCY 383 (868)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence 888888888888777654 8999998543
No 142
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=39.18 E-value=31 Score=36.11 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC-----CCcEEEEcCCcCc-cchHHHHHHHHH-HhCCCeeeC--CCCCCCCCCCCCCcccH----HH
Q 013746 205 NSDIDKAVSLLKEA-----KKPLIVFGKGAAY-ARAEGELKKLVE-STGIPFLPT--PMGKGLLPDTHPLAATA----AR 271 (437)
Q Consensus 205 ~~~~~~~~~~l~~a-----~rPvil~G~g~~~-~~~~~~l~~lae-~~g~pv~tt--~~gkg~~~~~hp~~~G~----~~ 271 (437)
+++++.+++.|++. ..-+.+.++.... ....-.+.+|++ .+|.+-+.+ ....+..-......+|. ..
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (715)
T 2iv2_X 81 DEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNA 160 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCCCCCCCC
Q ss_pred HhchhcCCEEEEEcCcC
Q 013746 272 SLAIGQCDVALVVGARL 288 (437)
Q Consensus 272 ~~~l~~aDlvl~iG~~~ 288 (437)
..-++++|+||++|+..
T Consensus 161 ~~di~~ad~il~~G~n~ 177 (715)
T 2iv2_X 161 INEIDNTDLVFVFGYNP 177 (715)
T ss_dssp GGGGGGCSEEEEESCCH
T ss_pred HhHHhcCCEEEEEcCCh
No 143
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=38.63 E-value=11 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHhchhcCCEEEEEcCcCCCccccCCCCC-CCCCceEEEhH
Q 013746 271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVD 310 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~vd 310 (437)
+...+++||++|+||+++.-+...+.... ...+.+++.|+
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN 240 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEEC
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 34567899999999999875443332110 01345677665
No 144
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=38.57 E-value=58 Score=32.01 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
..+.+++..+.+..+-++++.....+..+.+++..++++.++|++....
T Consensus 115 Tt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~ 163 (443)
T 3dm5_A 115 TTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQ 163 (443)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTT
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCC
Confidence 3456777777776666666767777888999999999999999986543
No 145
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=38.06 E-value=1.6e+02 Score=26.46 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEE
Q 013746 207 DIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (437)
Q Consensus 207 ~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (437)
.+.+|+..+..++ .-++++|.. ..+.+.+.++|++.|.+.++...=-|.+-.-.- ..+...|+|+++
T Consensus 90 ~L~~A~~~i~~~~~~~~iLfVgTk---~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~--------~~f~~PdlliV~ 158 (253)
T 3bch_A 90 KLLLAARAIVAIENPADVSVISSR---NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--------AAFREPRLLVVT 158 (253)
T ss_dssp HHHHHHHHHHTCSSGGGEEEEECS---HHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSC--------STTCSCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCC---HHHHHHHHHHHHHhCCeeecceecCCcccCccc--------cccCCCCEEEEE
Confidence 3566667776543 347788754 246688999999999998876443344432111 134678888888
Q ss_pred cCcCC
Q 013746 285 GARLN 289 (437)
Q Consensus 285 G~~~~ 289 (437)
..+-+
T Consensus 159 Dp~~e 163 (253)
T 3bch_A 159 DPRAD 163 (253)
T ss_dssp CTTTT
T ss_pred CCCcc
Confidence 76543
No 146
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=37.71 E-value=27 Score=32.89 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~ 267 (437)
+....++++.|-..++...++|... +.....+..++++.++|+++...+...+.+.+|+++
T Consensus 57 p~~a~~~a~~Li~~d~V~aiiG~~~--S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~f 117 (371)
T 4f06_A 57 PAQSKALAQELIVKEKVQYLAGLYF--TPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIV 117 (371)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCS--HHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccc--ccchHHHHHHHHhhcCCccccccccchhcccCCcce
Confidence 4444455555666678888998664 566788889999999999987665444445556554
No 147
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=37.47 E-value=1.2e+02 Score=25.00 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcC-CCEEEecCCCChHH--HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhh
Q 013746 16 GNTLAAKSLSLFG-ATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHG 91 (437)
Q Consensus 16 ~~~~i~~~L~~~G-v~~vFg~pG~~~~~--l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~ 91 (437)
--+.+++.|.+.+ -=++||+-++.... +...+..-|++.+...+.. .. ..-....+.+ -++++.|..| ..+.
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~-~~--~~~~~~~~~~-d~vI~iS~sG~t~~~ 112 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGE-AA--HGDLGMVTPQ-DVVIAISNSGESSEI 112 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTH-HH--HHTSTTCCTT-CEEEEECSSSCCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchH-Hh--hhhhccCCCC-CEEEEEeCCCCCHHH
Confidence 3566778887775 55777775544322 2223334566655443221 11 1111222322 3444444445 5667
Q ss_pred HHHHHHhhhCCCcEEEEecCCCc
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
+..+..|...+.|++.||+....
T Consensus 113 ~~~~~~ak~~g~~vi~IT~~~~s 135 (183)
T 2xhz_A 113 TALIPVLKRLHVPLICITGRPES 135 (183)
T ss_dssp HHHHHHHHTTTCCEEEEESCTTS
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
Confidence 77888899999999999986543
No 148
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=36.85 E-value=13 Score=35.61 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCCCCcccHHHHh-------------chhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 258 LLPDTHPLAATAARSL-------------AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 258 ~~~~~hp~~~G~~~~~-------------~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
.|-|..|...-..... .+.+||++|+||+++.-+...+.......++++|.|+
T Consensus 187 ~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN 252 (361)
T 1q14_A 187 FFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCN 252 (361)
T ss_dssp CBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEES
T ss_pred cccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEe
No 149
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=35.48 E-value=1e+02 Score=28.23 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
...+..++..+....+-+++++....+..+.+.+..++++.|+|++..
T Consensus 112 TT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 112 TTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp THHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 345667777777777788888888888888888999999999999874
No 150
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=35.34 E-value=64 Score=26.87 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEE
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl 282 (437)
.+.+.+++++++|.+++ -++++|.|... .....+.....++|.++..-.. ..|.+. .....+.+-|++|
T Consensus 24 l~~~~l~~~~~~i~~a~-~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~~~~------~~~~~~---~~~~~~~~~d~~i 92 (187)
T 3sho_A 24 TQPEAIEAAVEAICRAD-HVIVVGMGFSA-AVAVFLGHGLNSLGIRTTVLTE------GGSTLT---ITLANLRPTDLMI 92 (187)
T ss_dssp CCHHHHHHHHHHHHHCS-EEEEECCGGGH-HHHHHHHHHHHHTTCCEEEECC------CTHHHH---HHHHTCCTTEEEE
T ss_pred CCHHHHHHHHHHHHhCC-EEEEEecCchH-HHHHHHHHHHHhcCCCEEEecC------CchhHH---HHHhcCCCCCEEE
Confidence 36788999999999986 57888888643 3445555555678888765431 111110 1123455677877
Q ss_pred EEc
Q 013746 283 VVG 285 (437)
Q Consensus 283 ~iG 285 (437)
++-
T Consensus 93 ~iS 95 (187)
T 3sho_A 93 GVS 95 (187)
T ss_dssp EEC
T ss_pred EEe
Confidence 774
No 151
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=35.19 E-value=8.6 Score=35.62 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=21.2
Q ss_pred chhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 274 AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 274 ~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
.+.+||++|++|+++.-+...+.......++++|.|+
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN 244 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCN 244 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEES
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEE
Confidence 4678999999999986433221111112355666665
No 152
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=35.16 E-value=65 Score=25.95 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
.....+++.+.+.|++.++-.+|.....+.+.+++.|++++.
T Consensus 88 ~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 88 KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVA 129 (144)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEEEc
Confidence 345566777888999999988998888888888888999885
No 153
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=35.04 E-value=70 Score=29.60 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~ 267 (437)
+....++++.|.+.+++..++|... +.....+.+++++.++|++........+.+.+|+++
T Consensus 66 ~~~~~~~~~~l~~~~~v~~iiG~~~--s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f 126 (366)
T 3td9_A 66 KTEAANAAARAIDKEKVLAIIGEVA--SAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVS 126 (366)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECSS--HHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEE
T ss_pred HHHHHHHHHHHhccCCeEEEEccCC--chhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEE
Confidence 3333444555555567888888653 455677889999999999987554333344455543
No 154
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=34.53 E-value=41 Score=28.01 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
++ .+++++++|.++++-++++|.|.... ....+.....++|.++..... .+. . ......+.+-|++|+
T Consensus 35 ~~-~i~~~~~~i~~a~~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~~~-------~~~--~-~~~~~~~~~~d~vI~ 102 (183)
T 2xhz_A 35 NQ-NFTLACEKMFWCKGKVVVMGMGASGH-IGRKMAATFASTGTPSFFVHP-------GEA--A-HGDLGMVTPQDVVIA 102 (183)
T ss_dssp SH-HHHHHHHHHHTCSSCEEEEECHHHHH-HHHHHHHHHHTTTCCEEECCT-------THH--H-HHTSTTCCTTCEEEE
T ss_pred HH-HHHHHHHHHHhCCCeEEEEeecHHHH-HHHHHHHHHHhcCceEEEeCc-------hHH--h-hhhhccCCCCCEEEE
Confidence 45 89999999999987899999886432 233333333456777654321 100 0 000123467788888
Q ss_pred Ec
Q 013746 284 VG 285 (437)
Q Consensus 284 iG 285 (437)
+-
T Consensus 103 iS 104 (183)
T 2xhz_A 103 IS 104 (183)
T ss_dssp EC
T ss_pred Ee
Confidence 84
No 155
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=34.40 E-value=1.8e+02 Score=26.79 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCC--CcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEE
Q 013746 207 DIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (437)
Q Consensus 207 ~~~~~~~~l~~a~--rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (437)
.+.++++.|...+ .-++++|.. ..+.+.+.++|++.|.+.+....=-|.+-.-.- ..++..|+|+++
T Consensus 57 ~L~~A~~~i~~i~~~~~ILfVgTk---~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t--------~~f~~PdlliV~ 125 (295)
T 2zkq_b 57 KLLLAARAIVAIENPADVSVISSR---NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--------AAFREPRLLVVT 125 (295)
T ss_dssp HHHHHHHHHHHSSCGGGEEEEECS---HHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTC--------SSCCCCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCc---HHHHHHHHHHHHHhCCceecceEecccccCccc--------ccccCCCeEEEe
Confidence 4566666666543 347788754 346688999999999998876443344432211 134678999988
Q ss_pred cCcCC
Q 013746 285 GARLN 289 (437)
Q Consensus 285 G~~~~ 289 (437)
..+-+
T Consensus 126 Dp~~e 130 (295)
T 2zkq_b 126 DPRAD 130 (295)
T ss_dssp CTTTT
T ss_pred CCCcc
Confidence 76544
No 156
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=34.31 E-value=1.4e+02 Score=24.57 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHhcCCCEEEe
Q 013746 15 DGNTLAAKSLSLFGATHMFG 34 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg 34 (437)
...+.+++.|++.| .||.
T Consensus 19 ~~~~~i~~~L~~~G--~Vl~ 36 (152)
T 4fyk_A 19 ALYARIVSRLRRYG--KVLT 36 (152)
T ss_dssp HHHHHHHHHHTTTS--EECC
T ss_pred HHHHHHHHHHHHcC--cccc
Confidence 45688999999999 4765
No 157
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=34.07 E-value=64 Score=26.06 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
.....+++.+.+.|++.++-.+|+....+.+.+++.|++++.
T Consensus 81 ~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 81 EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEEc
Confidence 445555666777899999999998888888877778898885
No 158
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=33.17 E-value=1.1e+02 Score=25.26 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCEEEecCCCChHH--HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhHH
Q 013746 17 NTLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGLA 93 (437)
Q Consensus 17 ~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~~ 93 (437)
-+.+++.|.+.+-=++||.-++.... +...+..-|...+... +.. ....+.+ -++++.|..| ..+.+.
T Consensus 30 i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~-~~~-------~~~~~~~-d~vi~iS~sG~t~~~~~ 100 (180)
T 1jeo_A 30 LDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVG-ETT-------TPSYEKD-DLLILISGSGRTESVLT 100 (180)
T ss_dssp HHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETT-STT-------CCCCCTT-CEEEEEESSSCCHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeC-CCc-------cccCCCC-CEEEEEeCCCCcHHHHH
Confidence 46677888887755667764443322 2222334566655543 321 1222222 2333333334 466778
Q ss_pred HHHHhhhCCCcEEEEecCCCc
Q 013746 94 GLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 94 gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
.+..|...+.|++.||+....
T Consensus 101 ~~~~ak~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 101 VAKKAKNINNNIIAIVCECGN 121 (180)
T ss_dssp HHHHHHTTCSCEEEEESSCCG
T ss_pred HHHHHHHCCCcEEEEeCCCCh
Confidence 888899999999999987543
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=32.98 E-value=77 Score=30.99 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
..+..++..+....+-+++++....+..+.+.+..+++..|+|++....
T Consensus 112 Tt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~ 160 (433)
T 3kl4_A 112 TTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPN 160 (433)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTT
T ss_pred HHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccc
Confidence 3466777777776677777777777788899999999999999986544
No 160
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=32.95 E-value=61 Score=33.66 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC-cCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEE
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKG-AAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g-~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (437)
..+++++.+.|.+.++ ++++|.- +..-.+.-.+.++.+++|..+..-..+ -+++.+-++.. ......++.|+||+
T Consensus 59 ~~Av~~i~~aI~~~ek-I~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~--r~~egygl~~~-~I~~~~~~~~LIIt 134 (666)
T 2zxr_A 59 REAAALLEEALRQGKR-IRVHGDYDADGLTGTAILVRGLAALGADVHPFIPH--RLEEGYGVLME-RVPEHLEASDLFLT 134 (666)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC-----------------------CCEEEE
T ss_pred HHHHHHHHHHHHcCCe-EEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCC--CCCccccCCHH-HHHhhccCCCEEEE
Confidence 4556777777777666 4555544 222233456778889999875543222 12222111111 11122346899999
Q ss_pred EcCcCCC
Q 013746 284 VGARLNW 290 (437)
Q Consensus 284 iG~~~~~ 290 (437)
+.+....
T Consensus 135 VD~G~~s 141 (666)
T 2zxr_A 135 VDCGITN 141 (666)
T ss_dssp SCCC---
T ss_pred EcCCchh
Confidence 9987654
No 161
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.35 E-value=65 Score=23.28 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.++..+.|++.+--++++-..+.. .....+..+|+..++|++...
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 356667787777666666666653 567889999999999998754
No 162
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.12 E-value=1.9e+02 Score=24.93 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEc
Q 013746 207 DIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (437)
Q Consensus 207 ~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (437)
.+..|++.+... ..-++++|.. ..+.+.+.++|++.|++.++...--|.+-.-. ...+...|+++++.
T Consensus 51 ~L~~A~~~i~~~~~~~ilfV~tk---~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~--------~~~~~~Pdllvv~D 119 (202)
T 3j20_B 51 RLKVAGKFLAKFEPQSILAVSVR---LYGQKPVKKFGEVTGARAIPGRFLPGTMTNPA--------VKNFFEPDVLIVTD 119 (202)
T ss_dssp HHHHHHHHHHHSCSSCEEEECCC---TTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSS--------SSSCCCCSEEEESC
T ss_pred HHHHHHHHHHhhCCCeEEEEecC---hHHHHHHHHHHHHHCCceeCceecCCCcccHh--------HHhccCCCeEEEeC
Confidence 355566666543 3457778754 35678899999999998776533334443221 12235778888876
Q ss_pred CcC
Q 013746 286 ARL 288 (437)
Q Consensus 286 ~~~ 288 (437)
.+-
T Consensus 120 p~~ 122 (202)
T 3j20_B 120 PRA 122 (202)
T ss_dssp TTT
T ss_pred Ccc
Confidence 543
No 163
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=32.01 E-value=41 Score=31.48 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
...+++++++|+++++.+++.|.|+..
T Consensus 31 ~~~i~~l~~~i~~a~~ivvlTGAGISt 57 (318)
T 3k35_A 31 ERKVWELARLVWQSSSVVFHTGAGIST 57 (318)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECGGGSG
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccCh
Confidence 345788999999999999999999854
No 164
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=31.94 E-value=2.5e+02 Score=24.35 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCCh------HHHHHHHHhCCCcEe----eccchHHHHHHH-HHHHhHhCCcEEEEE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPV------TSLANRAVQLGVRFI----AFHNEQSAGYAA-SAYGYLTGKPGILLT 82 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~------~~l~~al~~~~i~~i----~~~~E~~A~~~A-~gyar~tg~~~v~~~ 82 (437)
..++..+++.|.+.|-++|--+-|... ..+.+++.+.++.+. ........++.+ .-+-+...+|-++++
T Consensus 103 ~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 182 (280)
T 3gyb_A 103 FRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFS 182 (280)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEE
Confidence 457888999999999998877777643 234445555565433 222222222222 122223356778888
Q ss_pred cCChhhHhhHHHHHHhh
Q 013746 83 VSGPGCVHGLAGLSNGM 99 (437)
Q Consensus 83 t~GpG~~n~~~gi~~A~ 99 (437)
.+..-+..++.++.++-
T Consensus 183 ~~d~~a~g~~~al~~~g 199 (280)
T 3gyb_A 183 SNDITAIGALGAARELG 199 (280)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHcC
Confidence 87766666666666553
No 165
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=31.67 E-value=1e+02 Score=23.62 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
.+++.+.|++.+--++++-..+ .......+..+|+..++|++.-
T Consensus 26 ~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 3566677777666666666666 4567788999999999998754
No 166
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=31.40 E-value=90 Score=26.17 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=50.5
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
++...+...+-..+.|+++||.|-.++-+.|=.+ -+..+ +.. ++..| .-|+++ +-|
T Consensus 14 gS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~------------------~~~--a~~~g-~~ViIa--~AG 70 (169)
T 3trh_A 14 GSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEF------------------VEN--ADNRG-CAVFIA--AAG 70 (169)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHH------------------HHH--HHHTT-EEEEEE--EEC
T ss_pred CcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHH------------------HHH--HHhCC-CcEEEE--ECC
Confidence 4556677889999999999999999988854321 11111 111 11122 335554 445
Q ss_pred hHhhHHHHHHhhhCCCcEEEEec
Q 013746 88 CVHGLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g 110 (437)
..+.++|+..++. ..|||-+--
T Consensus 71 ~aa~LpgvvA~~t-~~PVIgVP~ 92 (169)
T 3trh_A 71 LAAHLAGTIAAHT-LKPVIGVPM 92 (169)
T ss_dssp SSCCHHHHHHHTC-SSCEEEEEC
T ss_pred hhhhhHHHHHhcC-CCCEEEeec
Confidence 6788999888876 689987754
No 167
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=31.38 E-value=2.5e+02 Score=30.41 Aligned_cols=119 Identities=11% Similarity=0.042 Sum_probs=67.6
Q ss_pred CcEe-eccchHHHHHHHHHHHhHhCCc-EEEEEcCChhhHh--------hHHHHHHh-hhCCCcEEEEecCCCccCCCCC
Q 013746 52 VRFI-AFHNEQSAGYAASAYGYLTGKP-GILLTVSGPGCVH--------GLAGLSNG-MINTWPIVMISGSCDQKDFGRG 120 (437)
Q Consensus 52 i~~i-~~~~E~~A~~~A~gyar~tg~~-~v~~~t~GpG~~n--------~~~gi~~A-~~~~~Pvl~I~g~~~~~~~~~~ 120 (437)
.+++ ....|+++..+|.|||...-+. .++..+.|. +.| .++.. +| |..+.||+++... . ..|.|
T Consensus 652 ~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~d-F~~~AQra~DQii~~~-~ak~~~~~~vv~~l~~-G--~~g~G 726 (933)
T 2jgd_A 652 FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGD-FANGAQVVIDQFISSG-EQKWGRMCGLVMLLPH-G--YEGQG 726 (933)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGG-GGGGGHHHHHHTTTTH-HHHHCCCCCCEEEEEC-C--CSSSC
T ss_pred CeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhh-hhcccHHHHHHHHHHH-HHHHccCCCEEEEEeC-C--CCCCC
Confidence 5666 5679999999999999987662 222234553 233 22222 23 3468898888753 2 23334
Q ss_pred C-CCCcchhhhccCc--cce-eeecCCcCchHHHHHHHHHHhhcCCCceeEEEcCcchhccc
Q 013746 121 D-FQELDQVEAVKPF--SKF-AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (437)
Q Consensus 121 ~-~q~~d~~~~~~~~--~k~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~dv~~~~ 178 (437)
+ ++..-..+++.-+ ..+ .....++.++..++++++. ...++||++--|..+....
T Consensus 727 ~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~---~~~~~Pvii~~pk~l~r~~ 785 (933)
T 2jgd_A 727 PEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQAL---RGMRRPLVVMSPKSLLRHP 785 (933)
T ss_dssp TTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGGCT
T ss_pred cccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHH---hcCCCcEEEEecchhccCC
Confidence 3 3332223444322 222 2334456667666666532 3324899999999887643
No 168
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=31.28 E-value=1.1e+02 Score=25.74 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=44.1
Q ss_pred cCCCChHHHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhhH---hhHHHHHHhhhCCCcEEEEe
Q 013746 35 VVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV---HGLAGLSNGMINTWPIVMIS 109 (437)
Q Consensus 35 ~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~---n~~~gi~~A~~~~~Pvl~I~ 109 (437)
+.++....+.+++++.|.+++..++.....-..+.... ...++ ++...|||.. .....+..+...+.|+|-|+
T Consensus 8 n~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~-~~~~~-iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC 83 (192)
T 1i1q_B 8 NIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLAT-MKNPV-LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGIC 83 (192)
T ss_dssp CSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTT-CSSEE-EEECCCSSCGGGSTTHHHHHHHHBTTBCEEEET
T ss_pred CCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhh-ccCCe-EEECCCCcCchhCchHHHHHHHHhcCCCEEEEC
Confidence 45565566777887778777776665221111111111 13466 6667788864 34456667767789999987
No 169
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=31.18 E-value=56 Score=31.24 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCcCcc--chHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEEEEcC
Q 013746 218 AKKPLIVFGKGAAYA--RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVALVVGA 286 (437)
Q Consensus 218 a~rPvil~G~g~~~~--~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl~iG~ 286 (437)
.+|++|+.|.+.... +..+.+.+..+..|+.+..-... +.+|-.--. ...+.+ .++|+||.||.
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGV-----EPNPKDTNVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCC-----CSSCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 479999999888766 57888888888888876431111 222322111 111222 46899999984
No 170
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=30.96 E-value=97 Score=28.84 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCC--CCCCcc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAA 267 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~--~hp~~~ 267 (437)
+....++++.|...+++..++|... +.....+..++++.++|+++.......+.. .+|+++
T Consensus 58 ~~~a~~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f 120 (379)
T 3n0w_A 58 TDVALSIAREWFDRDGVDAIFDVVN--SGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGI 120 (379)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC--HHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEE
T ss_pred HHHHHHHHHHHHHhCCceEEEcCCC--cHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEE
Confidence 3333444455555567888888653 456677889999999999986543333332 245543
No 171
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=30.94 E-value=2.7e+02 Score=24.39 Aligned_cols=150 Identities=9% Similarity=0.062 Sum_probs=75.8
Q ss_pred CcHHHHHHHHHHhcCC--CEEEecC----CC---C-----hHHHHHHHHhCCC--cEee---c-cchHHHHHHHHHHHhH
Q 013746 14 IDGNTLAAKSLSLFGA--THMFGVV----GI---P-----VTSLANRAVQLGV--RFIA---F-HNEQSAGYAASAYGYL 73 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv--~~vFg~p----G~---~-----~~~l~~al~~~~i--~~i~---~-~~E~~A~~~A~gyar~ 73 (437)
..++..+++.|.+.|- ++|.-+- |. . ...+.+++.+.++ +.+. . .+...+--++.-+-+.
T Consensus 118 ~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (304)
T 3gbv_A 118 HQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFRE 197 (304)
T ss_dssp HHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHh
Confidence 4578889999999988 7776664 32 1 2234455555443 3322 1 1222222222222223
Q ss_pred hCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEecCCCccCCCCCCCCCcch-hhhc-cCccceeeecCCcCchHHHH
Q 013746 74 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQ-VEAV-KPFSKFAVKAKDITEVPKCV 151 (437)
Q Consensus 74 tg~~~v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~-~~~~-~~~~k~~~~v~~~~~~~~~l 151 (437)
..+|-++++.+.. +..++.++.++-.+.+.|+-+-+ .+. ...+ .+++..+...+..+.....+
T Consensus 198 ~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~--------------~~~~~~~~~~~~~~~tv~~~~~~~g~~av 262 (304)
T 3gbv_A 198 HPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDL--------------LERNVTCLKEGTVSFLIAQQPELQGFNSI 262 (304)
T ss_dssp CTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESC--------------CHHHHHHHHHTSEEEEEECCHHHHHHHHH
T ss_pred CCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCC--------------CHHHHHHHHcCceEEEEEeCHHHHHHHHH
Confidence 3467888888877 66666676665443333332211 111 2222 23443344433223334444
Q ss_pred HHHHHHhhcCCCceeEEEcCcchhccc
Q 013746 152 AQVLERAVSGRPGGCYLDLPTDVLHQT 178 (437)
Q Consensus 152 ~~A~~~a~~~~~GPv~l~iP~dv~~~~ 178 (437)
+..++....+...|-.+.+|..+...+
T Consensus 263 ~~l~~~i~~~~~~~~~~~~~~~lv~r~ 289 (304)
T 3gbv_A 263 KTLCDHLIFRKEVACTNYMPIDLLTKE 289 (304)
T ss_dssp HHHHHHHTSCCCCCSEEECCCEEECTT
T ss_pred HHHHHHHhcCCCCCceeecCcEEEEcc
Confidence 444444444555567788888766544
No 172
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=30.76 E-value=67 Score=30.01 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
...+.+++.|+++||+.+|-+-|+..+.-...+.+.++++|.
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~~i~vig 121 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPCVG 121 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCcEEE
Confidence 366789999999999999999999888777767666665553
No 173
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=30.48 E-value=44 Score=31.75 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
...+++++++|+++++.+++.|.|+..
T Consensus 31 ~~~i~~la~~i~~a~~iVvlTGAGISt 57 (355)
T 3pki_A 31 ERKVWELARLVWQSSSVVFHTGAGIST 57 (355)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSG
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccch
Confidence 456788999999999999999999854
No 174
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=30.14 E-value=53 Score=26.41 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
....+++.+.+.|++.++-.+|.....+.+.+++.|++++.
T Consensus 82 ~~~~v~~~~~~~gi~~i~~~~g~~~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 82 ALMDHLPEVLALRPGLVWLQSGIRHPEFEKALKEAGIPVVA 122 (140)
T ss_dssp HHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCHHHHHHHHHHcCCEEEc
Confidence 34445677788999999999999888888888888999886
No 175
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=30.10 E-value=70 Score=27.77 Aligned_cols=70 Identities=29% Similarity=0.286 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHh-C---CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCC
Q 013746 204 VNSDIDKAVSLLKE-A---KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCD 279 (437)
Q Consensus 204 ~~~~~~~~~~~l~~-a---~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aD 279 (437)
+.+.+++++++|.+ + .+-++++|.|....-+.+.-..|. ++|.++..-.........- ..+.+-|
T Consensus 40 d~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~-~lg~~~~~~~~~~~~~~~~----------~~~~~~D 108 (220)
T 3etn_A 40 VTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFC-STGIPSVFLHPSEAQHGDL----------GILQEND 108 (220)
T ss_dssp CCTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHH-HTTCCEEECCTTGGGBTGG----------GGCCTTC
T ss_pred CHHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHH-hcCCcEEEeCCHHHHHhhh----------ccCCCCC
Q ss_pred EEEEE
Q 013746 280 VALVV 284 (437)
Q Consensus 280 lvl~i 284 (437)
++|++
T Consensus 109 lvI~i 113 (220)
T 3etn_A 109 LLLLI 113 (220)
T ss_dssp EEEEE
T ss_pred EEEEE
No 176
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=30.00 E-value=36 Score=32.37 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCcc
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYA 232 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~ 232 (437)
..+++++++|+++++.+++.|.|+..+
T Consensus 34 ~~i~~l~~~l~~a~~IvvlTGAGISt~ 60 (354)
T 2hjh_A 34 FTIDHFIQKLHTARKILVLTGAGVSTS 60 (354)
T ss_dssp CSHHHHHHHHHHCSSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHhCCcEEEEECchhhHh
Confidence 468999999999999999999998543
No 177
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=29.55 E-value=20 Score=33.65 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcC-ccchHHHHHHHHHHhCCCee---eCCCCCCCCC-CCCCCcccHHHHhchhcCCE
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFL---PTPMGKGLLP-DTHPLAATAARSLAIGQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~-~~~~~~~l~~lae~~g~pv~---tt~~gkg~~~-~~hp~~~G~~~~~~l~~aDl 280 (437)
+..+++.+++..++--.|..|-|.. .+++...+.++++.++++++ +.|.. +. ...|++.-.....+.+.+|+
T Consensus 84 e~~d~I~~~le~~d~~~i~as~GGGTGSG~~~~la~~a~e~g~lt~~vv~~P~~---~Eg~~~~~nA~~~l~~L~e~~D~ 160 (320)
T 1ofu_A 84 EDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFP---FEGRKRMQIADEGIRALAESVDS 160 (320)
T ss_dssp HTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHhcCCcEEEEEeCCcc---ccchhHHHHHHHHHHHHHHhCCE
Confidence 3456677777788776666664432 35677788999999988654 33321 00 00111111123356688999
Q ss_pred EEEEc
Q 013746 281 ALVVG 285 (437)
Q Consensus 281 vl~iG 285 (437)
+++|-
T Consensus 161 ~ivid 165 (320)
T 1ofu_A 161 LITIP 165 (320)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99994
No 178
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=29.38 E-value=1.3e+02 Score=24.79 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHH--HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGL 92 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~--l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~ 92 (437)
--+.+++.|.+.+-=++||.-++.... +...+..-|++.... ++.. ....+.+ -++++.|..| ..+.+
T Consensus 26 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~-~~~~-------~~~~~~~-d~vI~iS~sG~t~~~~ 96 (186)
T 1m3s_A 26 EADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIV-GEIL-------TPPLAEG-DLVIIGSGSGETKSLI 96 (186)
T ss_dssp HHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEET-TSTT-------CCCCCTT-CEEEEECSSSCCHHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEe-Cccc-------ccCCCCC-CEEEEEcCCCCcHHHH
Confidence 346778888887655666764443221 222233456655544 3331 1222222 2444444455 45677
Q ss_pred HHHHHhhhCCCcEEEEecCCC
Q 013746 93 AGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
..+..|...+.|+|.||+...
T Consensus 97 ~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 97 HTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp HHHHHHHHTTCEEEEEESCTT
T ss_pred HHHHHHHHCCCEEEEEECCCC
Confidence 788889999999999998654
No 179
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=29.36 E-value=31 Score=33.14 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=38.9
Q ss_pred hCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEEEEEcC
Q 013746 217 EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVALVVGA 286 (437)
Q Consensus 217 ~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlvl~iG~ 286 (437)
..+|++|+.|......+..+.+.+..+..|+.+..-... +.+|-.--. ...+.+ .++|+||.||.
T Consensus 30 g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 30 GYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGV-----VPNPTITVVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp TCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBC-----CSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 358899999877755556778888778888876421111 222322111 111222 46899999984
No 180
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=29.09 E-value=60 Score=25.00 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 232 ~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
.-+.+.|++-|+++|+.+-...+|-.-+.. ++ ..+-+++||+||+.+....+.. +| .+.++++++
T Consensus 19 ymAaeaL~~aA~~~G~~ikVEtqGs~G~~n--~L-----t~~~I~~Ad~VIiA~d~~v~~~------RF-~GK~v~~~~ 83 (106)
T 2r48_A 19 YMAAENLQKAADRLGVSIKVETQGGIGVEN--KL-----TEEEIREADAIIIAADRSVNKD------RF-IGKKLLSVG 83 (106)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEETTEEES--CC-----CHHHHHHCSEEEEEESSCCCCG------GG-TTSBEEEEC
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCccC--CC-----CHHHHHhCCEEEEEeCCccCHh------Hc-CCCeEEEeC
Confidence 356789999999999998876665332211 11 1245789999999987554322 23 244677664
No 181
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=29.01 E-value=1.6e+02 Score=25.03 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=25.6
Q ss_pred EEEEcCChh-hHhhHHHHHHhhhCCCcEEEEecCCC
Q 013746 79 ILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (437)
Q Consensus 79 v~~~t~GpG-~~n~~~gi~~A~~~~~Pvl~I~g~~~ 113 (437)
++++.|-.| ..+.+.++..|...+.|+|.||+...
T Consensus 134 vvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 134 VLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDG 169 (212)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 333333333 56788889999999999999998643
No 182
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=29.01 E-value=86 Score=26.31 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=49.8
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
++...+...+-.++.|+++||+|=.++-+.+=.+ -+..+.+ -++..| .-|+++ +-|
T Consensus 19 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~--------------------~a~~~g-~~ViIa--~AG 75 (170)
T 1xmp_A 19 GSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAE--------------------TARERG-LKVIIA--GAG 75 (170)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHH--------------------HTTTTT-CCEEEE--EEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHH--------------------HHHhCC-CcEEEE--ECC
Confidence 4556677889999999999999999998854322 2221110 011112 124443 445
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecC
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGS 111 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~ 111 (437)
..+.++|+..+.. ..|||-+--.
T Consensus 76 ~aa~LpgvvA~~t-~~PVIgVP~~ 98 (170)
T 1xmp_A 76 GAAHLPGMVAAKT-NLPVIGVPVQ 98 (170)
T ss_dssp SSCCHHHHHHTTC-CSCEEEEEEC
T ss_pred chhhhHHHHHhcc-CCCEEEeeCC
Confidence 6788888887775 7888877643
No 183
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=29.01 E-value=1.1e+02 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCcEEEE-cCCcCccchHHHHHHHHHHhCCCeee
Q 013746 206 SDIDKAVSLLKEAKKPLIVF-GKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~-G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
+..+++.+.+++.++.+++. .+...-++...++.+.+++.|++|-.
T Consensus 67 ~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~v 113 (117)
T 3hh1_A 67 RAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVP 113 (117)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEE
Confidence 34567777787888898998 45554456666777777778888753
No 184
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=28.89 E-value=1.6e+02 Score=24.28 Aligned_cols=67 Identities=6% Similarity=-0.128 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCCh----HHHHH----HHHhCCCcEee-----ccchHHHHHHHHHHHhHhCCcEEE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPV----TSLAN----RAVQLGVRFIA-----FHNEQSAGYAASAYGYLTGKPGIL 80 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~----~~l~~----al~~~~i~~i~-----~~~E~~A~~~A~gyar~tg~~~v~ 80 (437)
+...+.+.+.|+++|.+-.| |-... ..+++ .++++.+=+.. .......+.+=.||+.+.|||.++
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~ 103 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLT 103 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 56778899999999986443 76432 12322 23334321111 113333344456777777777666
Q ss_pred EE
Q 013746 81 LT 82 (437)
Q Consensus 81 ~~ 82 (437)
+.
T Consensus 104 l~ 105 (161)
T 2f62_A 104 FT 105 (161)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 185
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=28.84 E-value=1.7e+02 Score=22.79 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
..++...|++.+--++++-..+........+..+|+..++|++...
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC
Confidence 4566677887777777776666433347889999999999998643
No 186
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=28.83 E-value=91 Score=29.07 Aligned_cols=49 Identities=12% Similarity=0.018 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
+....++++.|...+++..++|... +.....+..++++.++|++.+...
T Consensus 58 ~~~a~~~~~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~ 106 (374)
T 3n0x_A 58 PDLSKAALAEAYQDDGADIAIGTSS--SAAALADLPVAEENKKILIVEPAV 106 (374)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECSS--HHHHHHHHHHHHHHTCCEEECSCC
T ss_pred HHHHHHHHHHHHHhCCceEEEcCCC--cHHHHHHHHHHHHcCccEEEcCCC
Confidence 3333444444545567888888654 566778889999999999876543
No 187
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=28.58 E-value=71 Score=26.51 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCcEEEEcCCcCccch-H---HHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH----HHHhchhcCCEEEEEc
Q 013746 219 KKPLIVFGKGAAYARA-E---GELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA----ARSLAIGQCDVALVVG 285 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~-~---~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~----~~~~~l~~aDlvl~iG 285 (437)
-|..+++|......+. . +++++++++.|..|+. +. ++..-... .-...+++||+||++=
T Consensus 9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~-P~-------~~~~~~~~~i~~~d~~~i~~aD~vVA~l 75 (161)
T 2f62_A 9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI-PT-------DNEATEALDIRQKNIQMIKDCDAVIADL 75 (161)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC-TT-------TTCCSSHHHHHHHHHHHHHHCSEEEEEC
T ss_pred hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC-CC-------ccCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence 3677888887766555 3 5566777777876654 22 21111111 1235789999999993
No 188
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=28.38 E-value=39 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCc
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
++++++|+++++.+++.|.|+..
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~ 25 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSA 25 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGG
T ss_pred HHHHHHHHhCCCEEEEECchhhh
Confidence 56788999999999999999854
No 189
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=28.29 E-value=1.4e+02 Score=23.64 Aligned_cols=46 Identities=9% Similarity=0.235 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
..++...|++.+--++++-..+........+..||+..++|++.-.
T Consensus 29 ~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 29 LHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp HHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 4566677777776666666666444566889999999999998543
No 190
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=28.22 E-value=31 Score=32.29 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHhchhcCCEEEEEcCcCCCccccCCCC-CCCCCceEEEhH
Q 013746 271 RSLAIGQCDVALVVGARLNWLLHFGEPP-KWSKDVKFVLVD 310 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~i~vd 310 (437)
+...+++||++|++|+++.-+...+... ....+.+++.|+
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN 240 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEEC
T ss_pred HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 4456789999999999986543322110 001345666665
No 191
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=28.20 E-value=87 Score=25.03 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
....+++.+.+.|++.+.-.+|+....+.+..++.|++++.
T Consensus 81 ~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 81 VGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEEEc
Confidence 34445556667899999999998888888777777888875
No 192
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.17 E-value=1.5e+02 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
.+++.+.|++.+--++++-..+ .......+..+|+..++|++.-
T Consensus 20 ~~~v~kai~~gka~lViiA~D~-~~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKNA-PKEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECCC-CHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCccEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEe
Confidence 3456667776665555555554 3566788999999999998654
No 193
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=28.01 E-value=84 Score=26.72 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=48.5
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
++...+...+-.++.|+++||++=.++-+.+=.+ -+..+. .. ++..| .-|+++ +-|
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~------------------~~--a~~~g-~~ViIa--~AG 77 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYA------------------KN--AEERG-IEVIIA--GAG 77 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHH------------------HH--TTTTT-CCEEEE--EEE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHH------------------HH--HHhCC-CcEEEE--ecC
Confidence 4556677888899999999999988888754322 221111 10 01112 124443 445
Q ss_pred hHhhHHHHHHhhhCCCcEEEEecC
Q 013746 88 CVHGLAGLSNGMINTWPIVMISGS 111 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g~ 111 (437)
..+.++|+..+. -..|||-+--.
T Consensus 78 ~aa~LpgvvA~~-t~~PVIgVP~~ 100 (183)
T 1o4v_A 78 GAAHLPGMVASI-THLPVIGVPVK 100 (183)
T ss_dssp SSCCHHHHHHHH-CSSCEEEEEEC
T ss_pred cccccHHHHHhc-cCCCEEEeeCC
Confidence 678888887776 56788877643
No 194
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=27.77 E-value=63 Score=30.20 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
...+.+++.|+++||+.+|.+-|+..+.-...|.+.++.+|.
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~i~vvg 122 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIG 122 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhhCCCEEE
Confidence 367899999999999999999998887777777665555553
No 195
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=27.65 E-value=27 Score=31.31 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCcc
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYA 232 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~ 232 (437)
+++++++|+++++.+++.|.|...+
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~ 27 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTP 27 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGG
T ss_pred HHHHHHHHHhCCCEEEEECceeehh
Confidence 4678899999999999999998643
No 196
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=27.48 E-value=98 Score=26.13 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhc-CCCEEEecCCCChHH--HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhh
Q 013746 16 GNTLAAKSLSLF-GATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHG 91 (437)
Q Consensus 16 ~~~~i~~~L~~~-Gv~~vFg~pG~~~~~--l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~ 91 (437)
--+.+++.|.+. +-=++||+-++.... +...+.+-|+....... .. ++..-....+.+ -++++.|..| ..+.
T Consensus 33 ~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-~~--~~~~~~~~~~~~-dvvI~iS~sG~t~~~ 108 (201)
T 3fxa_A 33 ALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTP-SD--AVHGTLGVLQKE-DILILISKGGNTGEL 108 (201)
T ss_dssp HHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCH-HH--HTTTGGGGCCTT-CEEEEECSSSCCHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCc-hH--HHhhhhhcCCCC-CEEEEEeCCCCCHHH
Confidence 346678888887 466777774443322 22223445766555432 11 111111223333 2444444555 4566
Q ss_pred HHHHHHhhhCCCcEEEEecCCCc
Q 013746 92 LAGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 92 ~~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
+..+..|...+.++|.||+....
T Consensus 109 ~~~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 109 LNLIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp HTTHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHHcCCeEEEEECCCCC
Confidence 67788899999999999987643
No 197
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=27.44 E-value=65 Score=30.12 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHHhCCCcEee
Q 013746 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (437)
Q Consensus 15 ~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~ 56 (437)
...+.+++.|+++||+.+|.+-|+..+.-...|.+.++.+|.
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~i~vvg 121 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIG 121 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHhCCCEEE
Confidence 367899999999999999999998887777777665555543
No 198
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=27.42 E-value=83 Score=29.03 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCc
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA 266 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~ 266 (437)
+....+.++.|...+++..++|... +.....+..++++.++|+++.......+.+.+|++
T Consensus 57 ~~~~~~~~~~li~~~~v~~iiG~~~--s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~ 116 (368)
T 4eyg_A 57 PDNTKRLAQELIVNDKVNVIAGFGI--TPAALAAAPLATQAKVPEIVMAAGTSIITERSPYI 116 (368)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECSS--HHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTE
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCc--cHHHHHHHHHHHhCCceEEeccCCChhhccCCCCE
Confidence 3333444455555577888887643 45567788999999999997654333333334544
No 199
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=27.36 E-value=1e+02 Score=26.13 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=45.9
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 013746 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (437)
Q Consensus 10 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~ 88 (437)
+...+...+-.++.|+++||.|-.++-+.|=.+ -+..+. . -++..| .-|+++ +-|.
T Consensus 30 S~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~------------------~--~a~~~g-~~ViIa--~AG~ 86 (182)
T 1u11_A 30 SQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYA------------------R--TAAERG-LNVIIA--GAGG 86 (182)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHH------------------H--HTTTTT-CCEEEE--EEES
T ss_pred cHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHH------------------H--HHHhCC-CcEEEE--ecCc
Confidence 444566778888888888888888887754322 111111 0 011112 124443 4456
Q ss_pred HhhHHHHHHhhhCCCcEEEEecC
Q 013746 89 VHGLAGLSNGMINTWPIVMISGS 111 (437)
Q Consensus 89 ~n~~~gi~~A~~~~~Pvl~I~g~ 111 (437)
.+.++|+..+.. ..|||-+--.
T Consensus 87 aa~LpgvvA~~t-~~PVIgVP~~ 108 (182)
T 1u11_A 87 AAHLPGMCAAWT-RLPVLGVPVE 108 (182)
T ss_dssp SCCHHHHHHHHC-SSCEEEEEEC
T ss_pred hhhhHHHHHhcc-CCCEEEeeCC
Confidence 788888887775 7888877643
No 200
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=27.34 E-value=90 Score=25.34 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCc----cchHHHHHHHHHHhCCCeeeC
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAY----ARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~----~~~~~~l~~lae~~g~pv~tt 252 (437)
..+.+.....+.|+|++|.-... ....+++.++++.+++|++.+
T Consensus 113 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 113 QLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp HHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEe
Confidence 33334444567899999987753 234678899999999998854
No 201
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=27.28 E-value=19 Score=34.76 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=44.6
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhch--hcCCEE
Q 013746 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVA 281 (437)
Q Consensus 207 ~~~~~~~~l~~--a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~l--~~aDlv 281 (437)
.++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..-.. + +.+|-.--. ...+.+ .++|+|
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~---v--~~~p~~~~v~~~~~~~~~~~~D~I 92 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDG---V--MPNPTVTAVLEGLKILKDNNSDFV 92 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEE---E--CSSCBHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECC---c--cCCCCHHHHHHHHHHHHhcCcCEE
Confidence 45555555543 4789999998766555677888888888887643111 1 122322111 111222 479999
Q ss_pred EEEcC
Q 013746 282 LVVGA 286 (437)
Q Consensus 282 l~iG~ 286 (437)
|.||.
T Consensus 93 IavGG 97 (383)
T 3ox4_A 93 ISLGG 97 (383)
T ss_dssp EEEES
T ss_pred EEeCC
Confidence 99994
No 202
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=27.25 E-value=62 Score=31.27 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC--CCcEEEEc-CCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchh-----cCC
Q 013746 208 IDKAVSLLKEA--KKPLIVFG-KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIG-----QCD 279 (437)
Q Consensus 208 ~~~~~~~l~~a--~rPvil~G-~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~-----~aD 279 (437)
++++.+.+++- +|++|+.| ......+..+.+.+..+..|+.+. .|++-.|.---....+.++ ++|
T Consensus 31 l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~-------~f~~v~~~p~~~~v~~~~~~~~~~~~D 103 (407)
T 1vlj_A 31 IPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV-------EVSGVKPNPVLSKVHEAVEVAKKEKVE 103 (407)
T ss_dssp GGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEE-------EECCCCSSCBHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEE-------EecCccCCCCHHHHHHHHHHHHhcCCC
Q ss_pred EEEEEc
Q 013746 280 VALVVG 285 (437)
Q Consensus 280 lvl~iG 285 (437)
+||.||
T Consensus 104 ~IIavG 109 (407)
T 1vlj_A 104 AVLGVG 109 (407)
T ss_dssp EEEEEE
T ss_pred EEEEeC
No 203
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=27.23 E-value=1.3e+02 Score=25.50 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCChH--HHHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhH
Q 013746 16 GNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGL 92 (437)
Q Consensus 16 ~~~~i~~~L~~~Gv~~vFg~pG~~~~--~l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG-~~n~~ 92 (437)
.-+.+++.|.+.+-=++||+-++... .+...+..-|+...... +.. ....+ +--++++.|..| ..+.+
T Consensus 36 ~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~-~~~-------~~~~~-~~DvvI~iS~SG~t~~~i 106 (200)
T 1vim_A 36 TVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVG-ETV-------TPRIT-DQDVLVGISGSGETTSVV 106 (200)
T ss_dssp HHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT-STT-------CCCCC-TTCEEEEECSSSCCHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeC-Ccc-------ccCCC-CCCEEEEEeCCCCcHHHH
Confidence 34678888888876677777544332 12223334566655543 221 01222 223555555555 45666
Q ss_pred HHHHHhhhCCCcEEEEecCCCc
Q 013746 93 AGLSNGMINTWPIVMISGSCDQ 114 (437)
Q Consensus 93 ~gi~~A~~~~~Pvl~I~g~~~~ 114 (437)
..+..|...++|+|.||+....
T Consensus 107 ~~~~~ak~~g~~vI~IT~~~~s 128 (200)
T 1vim_A 107 NISKKAKDIGSKLVAVTGKRDS 128 (200)
T ss_dssp HHHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHCCCeEEEEECCCCC
Confidence 7788899999999999987543
No 204
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=27.22 E-value=1.4e+02 Score=22.31 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
.+++.+.|++.+--++++-..+ .......+..+|+..++|++.
T Consensus 21 ~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~vp~~~ 63 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARNA-RPDIKEDIEYYARLSGIPVYE 63 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETTS-CHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCC-CHHHHHHHHHHHHhcCCCEEE
Confidence 3556666776554444444443 346678899999999999875
No 205
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=27.02 E-value=95 Score=24.36 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCC--cEEEEcCCcCcc-----------chHHHHHHHHHHhCCCeeeCC---CCCCCCCC---------C
Q 013746 208 IDKAVSLLKEAKK--PLIVFGKGAAYA-----------RAEGELKKLVESTGIPFLPTP---MGKGLLPD---------T 262 (437)
Q Consensus 208 ~~~~~~~l~~a~r--Pvil~G~g~~~~-----------~~~~~l~~lae~~g~pv~tt~---~gkg~~~~---------~ 262 (437)
+.-+..++..... -+++.+.|+... ...+.+++|++.+|++++.=. ..+|+.++ .
T Consensus 21 l~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~~~~~ 100 (130)
T 2hy5_A 21 YQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNGKDA 100 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHTCSC
T ss_pred HHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhccccc
Confidence 3333444443333 478888888542 334668899998888876432 24677655 0
Q ss_pred CCCccc-----H-HHHhchhcCCEEEEEcC
Q 013746 263 HPLAAT-----A-ARSLAIGQCDVALVVGA 286 (437)
Q Consensus 263 hp~~~G-----~-~~~~~l~~aDlvl~iG~ 286 (437)
+.+..| . .-.+.+.++|-||.+|.
T Consensus 101 ~~l~~g~~i~~~~~l~~~~~~aD~vi~f~~ 130 (130)
T 2hy5_A 101 TNIHPKFRISGLGQLVEAAIQADRLVVFGD 130 (130)
T ss_dssp CCBCTTCEEECTHHHHHHHHHSSEEEEECC
T ss_pred ccccCCeEEeCHHHHHHHHHhCCEEEEeCC
Confidence 123333 1 23467789999999973
No 206
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=27.01 E-value=1.6e+02 Score=28.68 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.+..++..+....+-+++++....+..+.+.+..+++..|+|++...
T Consensus 114 ~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~ 160 (425)
T 2ffh_A 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 160 (425)
T ss_dssp HHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecC
Confidence 45667777777677788888888777777888899999999999754
No 207
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=26.96 E-value=41 Score=30.92 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEcCCcCc
Q 013746 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAY 231 (437)
Q Consensus 205 ~~~~~~~~~~l~~--a~rPvil~G~g~~~ 231 (437)
...+++++++|++ +++.+++.|.|+..
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiSt 33 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGIST 33 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCceeH
Confidence 4568899999999 99999999999854
No 208
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=26.94 E-value=60 Score=24.98 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccHHHHhchhcCCEEEEEcCcCCCccccCCCCCCCCCceEEEhH
Q 013746 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310 (437)
Q Consensus 231 ~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~vd 310 (437)
..-+.+.|++-|+++|+.+-...+|-.-+.. ++ ..+-+++||+||+.+....+.. +| .+.++++++
T Consensus 18 TymAaeaL~~aA~~~G~~ikVEtqGs~G~~n--~L-----t~~~I~~Ad~VIiA~d~~v~~~------RF-~GK~v~~~~ 83 (106)
T 2r4q_A 18 TFMAADALKEKAKELGVEIKVETNGSSGIKH--KL-----TAQEIEDAPAIIVAADKQVEME------RF-KGKRVLQVP 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEETTEEES--CC-----CHHHHHHCSCEEEEESSCCCCG------GG-TTSBEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCccC--CC-----CHHHHHhCCEEEEEeCCccCHh------Hc-CCCeEEEeC
Confidence 3456799999999999998876665332211 11 1245789999999987554322 23 244677664
No 209
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=26.44 E-value=3.2e+02 Score=23.78 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCC--------hHHHHHHHHhCCCc-----EeeccchHHHHHHH-HHHHhHhCCcEE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVR-----FIAFHNEQSAGYAA-SAYGYLTGKPGI 79 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~--------~~~l~~al~~~~i~-----~i~~~~E~~A~~~A-~gyar~tg~~~v 79 (437)
..++..+++.|.+.|-++|.-+-|.. ...+.+++.+.+++ ++........++.+ .-+-+...+|-+
T Consensus 112 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (289)
T 3g85_A 112 YKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKA 191 (289)
T ss_dssp HHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcE
Confidence 45788899999999998876665532 22344556666654 23333333333322 112122245778
Q ss_pred EEEcCChhhHhhHHHHHHh
Q 013746 80 LLTVSGPGCVHGLAGLSNG 98 (437)
Q Consensus 80 ~~~t~GpG~~n~~~gi~~A 98 (437)
+++.+..-+..++.++.++
T Consensus 192 i~~~~d~~a~g~~~al~~~ 210 (289)
T 3g85_A 192 LFCNSDSIALGVISVLNKR 210 (289)
T ss_dssp EEESSHHHHHHHHHHHHHT
T ss_pred EEEcCCHHHHHHHHHHHHc
Confidence 8887766666566666554
No 210
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=26.12 E-value=75 Score=24.72 Aligned_cols=41 Identities=20% Similarity=0.068 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEecC-----CCChHHHHHHHHhCCCcE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVV-----GIPVTSLANRAVQLGVRF 54 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~p-----G~~~~~l~~al~~~~i~~ 54 (437)
..++..|++.+.+.||+.|.-=- ++.+..+.+++.+.|++|
T Consensus 67 ~~vG~llA~ra~~~GI~~vvfDrgg~~yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 67 RQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHHHHHHHHHHHTTTCCBCEEECTTSCSCSSTTHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHcCCCC
Confidence 35778999999999999775433 467778899888888865
No 211
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=26.06 E-value=28 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCcEEEEcCCcCccchHH-HHHHHHHHhCCC
Q 013746 219 KKPLIVFGKGAAYARAEG-ELKKLVESTGIP 248 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~-~l~~lae~~g~p 248 (437)
+|.++++|.|...+...+ .+++.+++.|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 578899999987665544 888999999987
No 212
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=26.01 E-value=1.5e+02 Score=27.09 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~ 254 (437)
....+.++.|...+++..++|... +.....+.+++++.++|++....
T Consensus 58 ~~~~~~~~~l~~~~~v~~iig~~~--s~~~~~~~~~~~~~~iP~v~~~~ 104 (358)
T 3hut_A 58 DQARTIARAFVDDPRVVGVLGDFS--STVSMAAGSIYGKEGMPQLSPTA 104 (358)
T ss_dssp HHHHHHHHHHHHCTTEEEEEECSS--HHHHHHHHHHHHHHTCCEEESSC
T ss_pred HHHHHHHHHHhccCCcEEEEcCCC--cHHHHHHHHHHHHCCCcEEecCC
Confidence 333445555665688888888643 34556778899999999997643
No 213
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=25.93 E-value=95 Score=28.44 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 212 VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 212 ~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
+++..-++-|+.++-.|+..--....-.+..|..|+||++-
T Consensus 141 aDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy 181 (297)
T 1vkm_A 141 QDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGF 181 (297)
T ss_dssp HHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred hhHHHhcCCCeEEEecccchhhcchhHHHHHHhCCceEEEe
Confidence 44555678899999888877666777888889999998875
No 214
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=25.60 E-value=62 Score=27.26 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAA 230 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~ 230 (437)
+.++++++.|.+++| ++++|.|..
T Consensus 29 ~~~~~~~~~i~~a~~-I~i~G~G~S 52 (196)
T 2yva_A 29 RAAMTLVQSLLNGNK-ILCCGNGTS 52 (196)
T ss_dssp HHHHHHHHHHHTTCC-EEEEESTHH
T ss_pred HHHHHHHHHHHcCCE-EEEEeCchh
Confidence 678899999988865 777887753
No 215
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=25.47 E-value=81 Score=29.17 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
|--+++..-++-|+.++-.|+..--....-.+..|..|+||++-
T Consensus 148 DISaDL~eLarTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy 191 (316)
T 4ex8_A 148 DISPDLLQFRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVYGY 191 (316)
T ss_dssp CBCTHHHHTTTCCEEEEESBBCTTBCHHHHHHHHHHTTCCEEEE
T ss_pred chhhhHHHhcCCCeEEEecccchhhcchHHHHHHHhCCceEEEe
Confidence 33455666788999999999987667788889999999999875
No 216
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=25.21 E-value=41 Score=31.05 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCcCc
Q 013746 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
.....+++++++|+++++.+++.|.|+..
T Consensus 30 ~~~~~i~~l~~~i~~a~~ivvlTGAGiSt 58 (290)
T 3u31_A 30 TQSITLEELAKIIKKCKHVVALTGSGTSA 58 (290)
T ss_dssp CEEECHHHHHHHHHTCSSEEEEECGGGTG
T ss_pred hhHHHHHHHHHHHHhCCCEEEEeCCcccc
Confidence 34456899999999999999999999854
No 217
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=24.92 E-value=36 Score=31.08 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCc
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
.+++++++|++|++.+++.|.|+..
T Consensus 10 ~i~~l~~~l~~a~~ivvlTGAGiSt 34 (273)
T 3riy_A 10 SMADFRKFFAKAKHIVIISGAGVSA 34 (273)
T ss_dssp CHHHHHHHHHHCSEEEEEECGGGTG
T ss_pred HHHHHHHHHHhCCcEEEEECcccch
Confidence 4788999999999999999999854
No 218
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=24.74 E-value=1.6e+02 Score=26.07 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHh-CCCcEEEEcCCcCccchHHHHHHHHHHh-----CCCeeeCCCCCC
Q 013746 203 IVNSDIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVEST-----GIPFLPTPMGKG 257 (437)
Q Consensus 203 ~~~~~~~~~~~~l~~-a~rPvil~G~g~~~~~~~~~l~~lae~~-----g~pv~tt~~gkg 257 (437)
..|.++-++++++++ .-||-+++|--+.--++.+.=.+|.+.. ++|.++...-||
T Consensus 141 NAPTAL~~Lleli~~g~~~PalVIG~PVGFVgAaESKe~L~~~~~~~~~~vP~I~~~GrkG 201 (231)
T 2afr_A 141 NAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKG 201 (231)
T ss_dssp SCHHHHHHHHHHHHHHCCCCSEEEECCCCSSSHHHHHHHHHHHHHTTSCCCCEEEECSSCC
T ss_pred CcHHHHHHHHHHHHcCCCCCcEEEEeCCCcccHHHHHHHHHhcccccCCCCCEEEEeCCCC
Confidence 356778889999975 4699999998775555555444555543 799999877777
No 219
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=24.60 E-value=67 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEecC-----CCChHHHHHHHHhCCCcE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVV-----GIPVTSLANRAVQLGVRF 54 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~p-----G~~~~~l~~al~~~~i~~ 54 (437)
..++..|++.+.+.||+.|.-=- ++.+..+.+++.+.|++|
T Consensus 71 ~~vG~llA~Ral~~GI~~vvfDrgg~~yhGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 71 AAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEECTTSCSSSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHhCCCC
Confidence 45778999999999998766433 356677888888888764
No 220
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=24.13 E-value=34 Score=31.23 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.7
Q ss_pred HHhchhcCCEEEEEcCcCCCc
Q 013746 271 RSLAIGQCDVALVVGARLNWL 291 (437)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~ 291 (437)
+.+.+++||++|+||+++.-+
T Consensus 206 a~~~~~~aDl~lviGTSl~V~ 226 (273)
T 3riy_A 206 VDRELAHCDLCLVVGTSSVVY 226 (273)
T ss_dssp HHHHHHHCSEEEEESCCSCEE
T ss_pred HHHHHhcCCEEEEEeeCCcch
Confidence 345678999999999998643
No 221
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=23.99 E-value=2.8e+02 Score=26.16 Aligned_cols=88 Identities=10% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHhc-CCCEEEecCCCChHHHHHHH-HhCCCc--E-eec--cchHHHHHHHHH---HHh--HhCCcEEEEEcCChh
Q 013746 20 AAKSLSLF-GATHMFGVVGIPVTSLANRA-VQLGVR--F-IAF--HNEQSAGYAASA---YGY--LTGKPGILLTVSGPG 87 (437)
Q Consensus 20 i~~~L~~~-Gv~~vFg~pG~~~~~l~~al-~~~~i~--~-i~~--~~E~~A~~~A~g---yar--~tg~~~v~~~t~GpG 87 (437)
+++.|++. +++...++.|.+. .+.+.. ..-+|+ + +.. ..+.-+..++-. ..+ ..-+|-+++++.++.
T Consensus 44 li~~l~~~~~~~~~~~~tG~h~-~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~ 122 (396)
T 3dzc_A 44 LVQQLCQDNRFVAKVCVTGQHR-EMLDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTA 122 (396)
T ss_dssp HHHHHHHCTTEEEEEEECCSSS-HHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSH
T ss_pred HHHHHHhCCCCcEEEEEecccH-HHHHHHHHhcCCCCceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 56778776 7888899999874 233332 233442 1 211 112222222222 233 234799999876543
Q ss_pred hHhhHHHHHHhhhCCCcEEEEec
Q 013746 88 CVHGLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g 110 (437)
..+.+...|+..++|++++-+
T Consensus 123 --~~~~~~~aa~~~~IPv~h~~a 143 (396)
T 3dzc_A 123 --TTFAASLAAYYQQIPVGHVEA 143 (396)
T ss_dssp --HHHHHHHHHHTTTCCEEEETC
T ss_pred --hHHHHHHHHHHhCCCEEEEEC
Confidence 235555678889999988754
No 222
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=23.94 E-value=1.2e+02 Score=28.09 Aligned_cols=47 Identities=4% Similarity=0.017 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
...++++.|...+++..++|... +.....+..++++.++|++.....
T Consensus 58 ~a~~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~ 104 (375)
T 3i09_A 58 IAASKAREWMDRGGLDLLVGGTN--SATALSMNQVAAEKKKVYINIGAG 104 (375)
T ss_dssp HHHHHHHHHHHHSCEEEEEECSC--HHHHHHHHHHHHHHTCEEEECSCC
T ss_pred HHHHHHHHHHhhCCCEEEECCCC--cHHHHHHHHHHHHcCceEEEeCCC
Confidence 33344445545568888998643 456677889999999999986443
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=23.91 E-value=4e+02 Score=24.03 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccch-----HHHHHHHHHHhCCCeeeCCC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARA-----EGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~-----~~~l~~lae~~g~pv~tt~~ 254 (437)
....+++....+...+.|+|+++.-+..... .+++.++++.+|.+++.+..
T Consensus 95 s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 95 NNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSA 150 (302)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCT
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEEC
Confidence 4456777777777889999999998865332 34566778888998876543
No 224
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=23.80 E-value=60 Score=30.29 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 209 ~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
|.-+++..-++-|+.++..|+..--....-.++.|.+|+||++-
T Consensus 168 DISADL~eLarTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy 211 (335)
T 4gim_A 168 DISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGY 211 (335)
T ss_dssp CBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEE
T ss_pred cccchHHHhccCCeEEEeecchhhccchhHHHHHHhcCceEEEe
Confidence 33345555566777777777766556677777778888888754
No 225
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.74 E-value=3.6e+02 Score=23.40 Aligned_cols=96 Identities=5% Similarity=-0.036 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHhc-C-CCEEEecCCCCh--------HHHHHHHHhCCCcEe---eccchHHHHHH-HHHHHhHhCCcEE
Q 013746 14 IDGNTLAAKSLSLF-G-ATHMFGVVGIPV--------TSLANRAVQLGVRFI---AFHNEQSAGYA-ASAYGYLTGKPGI 79 (437)
Q Consensus 14 ~~~~~~i~~~L~~~-G-v~~vFg~pG~~~--------~~l~~al~~~~i~~i---~~~~E~~A~~~-A~gyar~tg~~~v 79 (437)
..++..+++.|.+. | -++|.-+-|... ..+.+++.+.++.+. ........++- +.-+-+...+|-+
T Consensus 114 ~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 193 (289)
T 3brs_A 114 IQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISV 193 (289)
T ss_dssp HHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 35778888999986 7 888766655321 123444555554422 12212222221 1112122346778
Q ss_pred EEEcCChhhHhhHHHHHHhhh-CCCcEEEEe
Q 013746 80 LLTVSGPGCVHGLAGLSNGMI-NTWPIVMIS 109 (437)
Q Consensus 80 ~~~t~GpG~~n~~~gi~~A~~-~~~Pvl~I~ 109 (437)
+++.+..-+..++.++.++-. +.+.|+-+-
T Consensus 194 i~~~~d~~a~g~~~al~~~G~~~di~vvg~d 224 (289)
T 3brs_A 194 MVGLNQYSATGAARAIKDMSLEAKVKLVCID 224 (289)
T ss_dssp EEESSHHHHHHHHHHHHHTTCTTTSEEEEEE
T ss_pred EEECCCcchHHHHHHHHhcCCCCCEEEEEEC
Confidence 888776655555555555422 335554443
No 226
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=23.07 E-value=36 Score=31.43 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.9
Q ss_pred HhchhcCCEEEEEcCcCCC
Q 013746 272 SLAIGQCDVALVVGARLNW 290 (437)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~ 290 (437)
...+++||++|++|+++.-
T Consensus 211 ~~~~~~aDllLviGTSl~V 229 (290)
T 3u31_A 211 EEEIAKCDLLLVIGTSSTV 229 (290)
T ss_dssp HHHHHHCSEEEEESCCSCS
T ss_pred HHHHhcCCEEEEECcCCcc
Confidence 4567899999999999864
No 227
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=23.03 E-value=1.6e+02 Score=23.85 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCcCcc---chHHHHHHHHHHhCCCeeeCCC
Q 013746 218 AKKPLIVFGKGAAYA---RAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 218 a~rPvil~G~g~~~~---~~~~~l~~lae~~g~pv~tt~~ 254 (437)
.+.|+++++.-.... ...+++.++++.+++|++.+..
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 164 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSA 164 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeC
Confidence 478999999877532 2467899999999999886543
No 228
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=22.97 E-value=64 Score=25.19 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEecC-----CCChHHHHHHHHhCCCcE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVV-----GIPVTSLANRAVQLGVRF 54 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~p-----G~~~~~l~~al~~~~i~~ 54 (437)
..+++.|++.+.+.||+.|+-=- ++.+..+.+++.+.|++|
T Consensus 69 ~~vG~llA~Ral~~GI~~vvfDrgg~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 69 AAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHHHHHHHHHTTCCCCCEECCCSSCSCSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccccHHHHHHHHHHHHhCCcC
Confidence 46889999999999999776433 456667778777777764
No 229
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=22.96 E-value=58 Score=32.31 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCc
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAY 231 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~ 231 (437)
..+++++++|+++++.+++.|.|+..
T Consensus 172 ~~i~~l~~~L~~ak~IVVLTGAGIST 197 (492)
T 4iao_A 172 FTIDHFIQKLHTARKILVLTGAGVST 197 (492)
T ss_dssp CSHHHHHHHHHHCSCEEEEECGGGGG
T ss_pred HHHHHHHHHHHhCCcEEEEeCccccc
Confidence 46899999999999999999999854
No 230
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=22.78 E-value=1.9e+02 Score=21.48 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
.+++.+.|++.+--++++-..+.. .....+..+|+..++|++..
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~ 66 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVV 66 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEe
Confidence 356667787777666666666542 45678899999999999864
No 231
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=22.77 E-value=1.6e+02 Score=22.86 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCcCcc---chHHHHHHHHHHhCCCeeeCCC
Q 013746 218 AKKPLIVFGKGAAYA---RAEGELKKLVESTGIPFLPTPM 254 (437)
Q Consensus 218 a~rPvil~G~g~~~~---~~~~~l~~lae~~g~pv~tt~~ 254 (437)
.+.|+++++.-.... ...+++.++++.+++|++.+..
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA 146 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence 478999999877532 3467889999999999886543
No 232
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=22.66 E-value=3.8e+02 Score=23.27 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHh--cCCCEEEecCCCCh--------HHHHHHHHhC-CCcEeec------cchHHHHHHH-HHHHhHhC
Q 013746 14 IDGNTLAAKSLSL--FGATHMFGVVGIPV--------TSLANRAVQL-GVRFIAF------HNEQSAGYAA-SAYGYLTG 75 (437)
Q Consensus 14 ~~~~~~i~~~L~~--~Gv~~vFg~pG~~~--------~~l~~al~~~-~i~~i~~------~~E~~A~~~A-~gyar~tg 75 (437)
..++..+++.|.+ .|-++|.-+-|... ..+.+++.+. +++++.. ......++-+ .-+-+...
T Consensus 108 ~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (291)
T 3l49_A 108 YSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYP 187 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCC
Confidence 3577888999999 89888876655322 2234455555 5664321 1122222222 22222233
Q ss_pred ---CcEEEEEcCChhhHhhHHHHHHhhhC
Q 013746 76 ---KPGILLTVSGPGCVHGLAGLSNGMIN 101 (437)
Q Consensus 76 ---~~~v~~~t~GpG~~n~~~gi~~A~~~ 101 (437)
+|-++++.+...+..++.++.++-..
T Consensus 188 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 188 NEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp STTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 67788888777666667777665444
No 233
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.52 E-value=3.8e+02 Score=23.27 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCCh--------HHHHHHHHhCCCcE----ee---ccc----hHHHHHHHHHHHhHh
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPV--------TSLANRAVQLGVRF----IA---FHN----EQSAGYAASAYGYLT 74 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~--------~~l~~al~~~~i~~----i~---~~~----E~~A~~~A~gyar~t 74 (437)
..++..+++.|.+.|-++|.-+-|... ..+.+++.+.|+++ +. ... ....++.+.-. .+.
T Consensus 107 ~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~l~ 185 (288)
T 2qu7_A 107 EEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKT-LLS 185 (288)
T ss_dssp HHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHH-HHh
Confidence 357888999999999988766655321 23444565666643 22 221 22222222111 122
Q ss_pred CCcEEEEEcCChhhHhhHHHHHH
Q 013746 75 GKPGILLTVSGPGCVHGLAGLSN 97 (437)
Q Consensus 75 g~~~v~~~t~GpG~~n~~~gi~~ 97 (437)
.+|-++++.+..-+..++.++.+
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~ 208 (288)
T 2qu7_A 186 KGIKGIVATNHLLLLGALQAIKE 208 (288)
T ss_dssp TTCCEEEECSHHHHHHHHHHHHH
T ss_pred cCCCEEEECCcHHHHHHHHHHHH
Confidence 26778887766544444444444
No 234
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=22.52 E-value=1.6e+02 Score=24.06 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcCc-------cchHHHHHHHHHHhCCCeeeC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAAY-------ARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~~-------~~~~~~l~~lae~~g~pv~tt 252 (437)
..++++++.+++....+++++.-... ....+.++++|++.+++++..
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~ 139 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPF 139 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEcc
Confidence 35777888888777778888742111 123467889999999999864
No 235
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=22.47 E-value=4.3e+02 Score=23.82 Aligned_cols=85 Identities=14% Similarity=0.100 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCCh--------HHHHHHHHhCCCcEeec--cchHHHHHHHHHHHhHhCCcEEEEEc
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPV--------TSLANRAVQLGVRFIAF--HNEQSAGYAASAYGYLTGKPGILLTV 83 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~--------~~l~~al~~~~i~~i~~--~~E~~A~~~A~gyar~tg~~~v~~~t 83 (437)
..++...++.|.+.|-++|--+-|... ..+.+++.+.|+.++.. ......++.+.-.-...+.|-++++.
T Consensus 159 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~ 238 (333)
T 3jvd_A 159 EAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVFNNGLPDALIVA 238 (333)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC
Confidence 467889999999999998876665422 23445566678764432 22222233222211122237777877
Q ss_pred CChhhHhhHHHHHHh
Q 013746 84 SGPGCVHGLAGLSNG 98 (437)
Q Consensus 84 ~GpG~~n~~~gi~~A 98 (437)
+..-+..++.++.++
T Consensus 239 nd~~A~g~~~al~~~ 253 (333)
T 3jvd_A 239 SPRLMAGVMRAFTRL 253 (333)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 665555555555554
No 236
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=22.42 E-value=2.2e+02 Score=23.64 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCC---------CcEEEEcCCcCcc------------------chHHHHHHHHHHhCCCeeeCCCC--C
Q 013746 206 SDIDKAVSLLKEAK---------KPLIVFGKGAAYA------------------RAEGELKKLVESTGIPFLPTPMG--K 256 (437)
Q Consensus 206 ~~~~~~~~~l~~a~---------rPvil~G~g~~~~------------------~~~~~l~~lae~~g~pv~tt~~g--k 256 (437)
..++++++.+++.. ..+++++.-.... ...+.++++|++.+++++..... .
T Consensus 109 ~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~~ 188 (216)
T 2q0q_A 109 LGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPMPHPWFQLIFEGGEQKTTELARVYSALASFMKVPFFDAGSVIST 188 (216)
T ss_dssp HHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCCCSHHHHHHTTTHHHHHTTHHHHHHHHHHHHTCCEEEGGGTCCC
T ss_pred HHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcccCCcchhhhccHHHHHHHHHHHHHHHHHHcCCcEEchhHhccc
Confidence 34677778887765 5677775422111 23467889999999999865432 1
Q ss_pred CCCCCCCCCcccH
Q 013746 257 GLLPDTHPLAATA 269 (437)
Q Consensus 257 g~~~~~hp~~~G~ 269 (437)
-..+.-||.-.|.
T Consensus 189 ~~~Dg~Hpn~~G~ 201 (216)
T 2q0q_A 189 DGVDGIHFTEANN 201 (216)
T ss_dssp CSTTSSSCCHHHH
T ss_pred CCCCccCcCHHHH
Confidence 2234457776664
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=22.40 E-value=2.3e+02 Score=25.67 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCCCCCCCCCCCCcccH-HHHhc-hhcCCEEEE
Q 013746 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLA-IGQCDVALV 283 (437)
Q Consensus 207 ~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~gkg~~~~~hp~~~G~-~~~~~-l~~aDlvl~ 283 (437)
....++..+....+-+++++....+....+++..+++..|++++.... +.||..+-. .-..+ ..+.|+||.
T Consensus 114 ~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~------~~~p~~l~~~~l~~~~~~~~D~vii 186 (295)
T 1ls1_A 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD------GESPESIRRRVEEKARLEARDLILV 186 (295)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT------TCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCC------CCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 455667777777778888998887766667788889999999986432 234533211 11122 257887664
No 238
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.27 E-value=1.4e+02 Score=27.15 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 201 ~~~~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
..|.+..+.++.+.+++.+=++|++-.... ....+.|.++|+..|+||..
T Consensus 194 ~eps~~~l~~l~~~ik~~~v~~if~e~~~~-~~~~~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 194 SEVANSDMIETVNLIIDHNIKAIFTESTTN-PERMKKLQEAVKAKGGQVEV 243 (282)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCEEECBTTSC-THHHHHHHHHHHTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-hHHHHHHHHHHHhcCCceEE
Confidence 456788999999999999889999876553 44567788889999999875
No 239
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.21 E-value=2.6e+02 Score=21.24 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCC-hh--hHhhHHHHHHh-hhCCCcEEEEecCCCccCCCC
Q 013746 44 ANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG-PG--CVHGLAGLSNG-MINTWPIVMISGSCDQKDFGR 119 (437)
Q Consensus 44 ~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G-pG--~~n~~~gi~~A-~~~~~Pvl~I~g~~~~~~~~~ 119 (437)
...|...|+++..+.+...|--. .+. .+|-++++-.. |+ ...++.-|... ....+|+|++++.......
T Consensus 25 ~~~L~~~g~~v~~~~~~~~a~~~----l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~-- 97 (147)
T 2zay_A 25 ISALSQEGFDIIQCGNAIEAVPV----AVK-THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEE-- 97 (147)
T ss_dssp HHHHHHHTEEEEEESSHHHHHHH----HHH-HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHH--
T ss_pred HHHHHHcCCeEEEeCCHHHHHHH----HHc-CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHH--
Confidence 33455557776665554433221 121 24777766432 22 23334444432 3467999999986532210
Q ss_pred CCCCCcchhhhccCccceeeecCCcCchHHHHHHHHHHhh
Q 013746 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV 159 (437)
Q Consensus 120 ~~~q~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 159 (437)
...+-..+..|-...-+++++...++++++...
T Consensus 98 -------~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 98 -------AQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp -------HHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred -------HHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 001111122222233355667777777766543
No 240
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=21.97 E-value=1.7e+02 Score=30.41 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC-----CCcEEEEcCCcCccchHHHHHHHHHH-hCCCeeeCCC---------------CCCCCCCCC
Q 013746 205 NSDIDKAVSLLKEA-----KKPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPM---------------GKGLLPDTH 263 (437)
Q Consensus 205 ~~~~~~~~~~l~~a-----~rPvil~G~g~~~~~~~~~l~~lae~-~g~pv~tt~~---------------gkg~~~~~h 263 (437)
+++++.+++.|++. ..-+.+.|.+.......-.+.+|++. +|.+-+.... |.+....+
T Consensus 82 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~- 160 (723)
T 2nap_A 82 DEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGT- 160 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSC-
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCCCCC-
Q ss_pred CCcccHHHHhchhcCCEEEEEcCcC
Q 013746 264 PLAATAARSLAIGQCDVALVVGARL 288 (437)
Q Consensus 264 p~~~G~~~~~~l~~aDlvl~iG~~~ 288 (437)
..-++++|+||++|+.+
T Consensus 161 --------~~d~~~ad~il~~G~n~ 177 (723)
T 2nap_A 161 --------YADIDQATCFFIIGSNT 177 (723)
T ss_dssp --------GGGGGTCSEEEEESCCH
T ss_pred --------hhhHhHCCEEEEEcCCh
No 241
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=21.73 E-value=1.1e+02 Score=24.83 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHhCCCcEEEEcCCcCcc----chHHHHHHHHHHhCCCeeeC
Q 013746 213 SLLKEAKKPLIVFGKGAAYA----RAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 213 ~~l~~a~rPvil~G~g~~~~----~~~~~l~~lae~~g~pv~tt 252 (437)
+.+...+.|++++|.-.... ...+++.++++.+++|++.+
T Consensus 105 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 105 DMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp HHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 33344578999999877532 24678999999999998765
No 242
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=21.70 E-value=1.4e+02 Score=26.35 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCcCccchHHHHHHHHHHhCCCeee
Q 013746 204 VNSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a-~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~t 251 (437)
..+-++.+.++...+ .|+.|++|+|++... +.+|.+.+|+.-+.
T Consensus 161 a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~N----i~~l~~~tGv~e~H 205 (224)
T 2bdq_A 161 IIENIKHIKALVEYANNRIEIMVGGGVTAEN----YQYICQETGVKQAH 205 (224)
T ss_dssp GGGGHHHHHHHHHHHTTSSEEEECSSCCTTT----HHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCHHH----HHHHHHhhCCCEEc
Confidence 345567777777654 589999999997543 66778888987665
No 243
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=21.63 E-value=71 Score=30.48 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCee
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (437)
++++.+.+.+.+|++|+.+..+.. ..+.+.+..+..|+.+.
T Consensus 33 l~~l~~~l~~~~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~ 73 (368)
T 3qbe_A 33 LDELEDLLADRHKVAVVHQPGLAE--TAEEIRKRLAGKGVDAH 73 (368)
T ss_dssp HHHHHHHHTTCSEEEEEECGGGHH--HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCEEEEEECccHHH--HHHHHHHHHHhcCCcce
Confidence 445555565558999999988754 35667776777787653
No 244
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=21.54 E-value=28 Score=29.73 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred CcEEEEEcCccccCCHH--HHHHHH-HcCcccccC
Q 013746 406 RLVVAVEGDSGFGFSAV--EVEVWL-SCIIMISSI 437 (437)
Q Consensus 406 ~~vv~i~GDG~f~~~~~--eL~Ta~-r~~l~i~~i 437 (437)
+.+|+++|+=.-.-... |+++|+ +.++||+.|
T Consensus 81 k~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~V 115 (189)
T 3hyn_A 81 KNIILFLSSITANSRALREEMNYGIGTKGLPVIVI 115 (189)
T ss_dssp EEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEE
T ss_pred CcEEEEEecCccccchhHHHHHHHHHhcCCcEEEE
No 245
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.53 E-value=90 Score=25.75 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 204 ~~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
+.+.+++++++|.+++ -++++|.|.... ....+.....++|.++..-
T Consensus 26 ~~~~i~~~~~~i~~a~-~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAK-KIFIFGVGRSGY-IGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHHHHCS-SEEEECCHHHHH-HHHHHHHHHHHTTCCEEET
T ss_pred CHHHHHHHHHHHHhCC-EEEEEeecHHHH-HHHHHHHHHHHcCCeEEEe
Confidence 4567899999999987 577788875432 3344544445688887654
No 246
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=21.34 E-value=2.1e+02 Score=21.35 Aligned_cols=44 Identities=11% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
.+++.+.|++.+--++++-..+. ......+..+|+..++|++..
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~-~~~~~~i~~~c~~~~vp~~~~ 67 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDAS-SNTAKKVTDKCNYYKVPYKKV 67 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSC-HHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhHHHHhcCceeEEEEecccc-ccchhhhcccccccCCCeeee
Confidence 35666778777766666666654 246678899999999999865
No 247
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=21.27 E-value=1.5e+02 Score=27.31 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHH--HHHHhCCCeeeCCCC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK--LVESTGIPFLPTPMG 255 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~--lae~~g~pv~tt~~g 255 (437)
..++++.|.+.+++..++|... +.....+.. ++++.++|++.....
T Consensus 61 ~~~~~~~l~~~~~v~~iig~~~--s~~~~~~~~~~~~~~~~iP~v~~~~~ 108 (364)
T 3lop_A 61 TVRNVRDMARVDNPVALLTVVG--TANVEALMREGVLAEARLPLVGPATG 108 (364)
T ss_dssp HHHHHHHHHHHSCEEEEECCCC--HHHHHHHHHTTHHHHHTCCEESCSCC
T ss_pred HHHHHHHHHhhcCcEEEEecCC--CHHHHhhCchhhHHhcCCcEEEcccC
Confidence 3344455555568888998643 355667888 999999999976543
No 248
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=21.26 E-value=51 Score=30.75 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCCCC
Q 013746 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (437)
Q Consensus 205 ~~~~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~~g 255 (437)
++...+..+.+-..+-|.|++-.|. ...+++.++|++.++|++.|...
T Consensus 69 ~~~r~~~~~~l~~~~iP~IIvtrg~---~pp~elie~A~e~~ipLl~T~~~ 116 (312)
T 1knx_A 69 LVEQQQILHNLLKLNPPAIILTKSF---TDPTVLLQVNQTYQVPILKTDFF 116 (312)
T ss_dssp HHHHTTTHHHHHTTCCSCEEEETTT---CCCHHHHHHGGGTCCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCC---CCCHHHHHHHHHcCCEEEEeCcc
Confidence 3333444555667788999987775 34578999999999999998764
No 249
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.99 E-value=4.2e+02 Score=23.14 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCCCh-------HHHHHHHHhCCCc----EeeccchHHHHHHHHH-HHhHhCCcEEEE
Q 013746 14 IDGNTLAAKSLSLFGATHMFGVVGIPV-------TSLANRAVQLGVR----FIAFHNEQSAGYAASA-YGYLTGKPGILL 81 (437)
Q Consensus 14 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~-------~~l~~al~~~~i~----~i~~~~E~~A~~~A~g-yar~tg~~~v~~ 81 (437)
..++...++.|.+.|-++|--+-|... ..+.+++.+.++. ++........++.+.- +-+...+|-+++
T Consensus 111 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 190 (289)
T 3k9c_A 111 VAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVV 190 (289)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 457888999999999998776655322 2345556666655 3333333333332211 111235677888
Q ss_pred EcCChhhHhhHHHHHHh
Q 013746 82 TVSGPGCVHGLAGLSNG 98 (437)
Q Consensus 82 ~t~GpG~~n~~~gi~~A 98 (437)
+.+..-+..++.++.++
T Consensus 191 ~~~d~~A~g~~~al~~~ 207 (289)
T 3k9c_A 191 AFNDRCATGVLDLLVRS 207 (289)
T ss_dssp ESSHHHHHHHHHHHHHT
T ss_pred ECChHHHHHHHHHHHHc
Confidence 87766555555665554
No 250
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.86 E-value=2.7e+02 Score=20.88 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=32.8
Q ss_pred HHHh-CCCc-EeeccchHHHHHHHHHHHhHhCCcEEEEEcCC-hh--hHhhHHHHHHh-hhCCCcEEEEecCCC
Q 013746 46 RAVQ-LGVR-FIAFHNEQSAGYAASAYGYLTGKPGILLTVSG-PG--CVHGLAGLSNG-MINTWPIVMISGSCD 113 (437)
Q Consensus 46 al~~-~~i~-~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~G-pG--~~n~~~gi~~A-~~~~~Pvl~I~g~~~ 113 (437)
.|.. .|.+ +..+.+...|.- +.+ ..+|-++++-.. |+ ...++.-+... ...++|+|++++...
T Consensus 27 ~L~~~~~~~~v~~~~~~~~a~~----~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 27 FLENLFPYAKIKIAYNPFDAGD----LLH-TVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp HHHHHCTTCEEEEECSHHHHHH----HHH-HTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred HHHhccCccEEEEECCHHHHHH----HHH-hcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCC
Confidence 3455 6777 555554433321 111 245777776433 32 22333444432 345799999998654
No 251
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=20.70 E-value=1.3e+02 Score=23.47 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCcEEEEcCCcCcc----chHHHHHHHHHHhCCCeeeC
Q 013746 210 KAVSLLKEAKKPLIVFGKGAAYA----RAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 210 ~~~~~l~~a~rPvil~G~g~~~~----~~~~~l~~lae~~g~pv~tt 252 (437)
++.+.....+.|+++++.-.... ...++..++++.+++|++.+
T Consensus 99 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 99 QIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp HHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEE
T ss_pred HHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEe
Confidence 33333334579999999887532 23567889999999998755
No 252
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=20.59 E-value=1.3e+02 Score=24.03 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeC
Q 013746 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (437)
Q Consensus 208 ~~~~~~~l~~a~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt 252 (437)
..++.+.|++.+--++++-..+........+..+|+..|+|++..
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v 81 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFV 81 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEE
T ss_pred chHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 355666777766566666666643335778999999999998754
No 253
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=20.53 E-value=1.6e+02 Score=24.46 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=48.8
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
++...+...+-..+.|+++||.|=.++-+.|=.+ -+..+.+ .++..| .-|+++ +-|
T Consensus 11 gs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~--------------------~a~~~g-~~ViIa--~AG 67 (163)
T 3ors_A 11 GSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFAS--------------------EARERG-INIIIA--GAG 67 (163)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHH--------------------HTTTTT-CCEEEE--EEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHH--------------------HHHhCC-CcEEEE--ECC
Confidence 4556677889999999999999999998854322 2222110 011122 224444 445
Q ss_pred hHhhHHHHHHhhhCCCcEEEEec
Q 013746 88 CVHGLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g 110 (437)
..+.++++..+. -..|||-+--
T Consensus 68 ~aa~LpgvvA~~-t~~PVIgVP~ 89 (163)
T 3ors_A 68 GAAHLPGMVASL-TTLPVIGVPI 89 (163)
T ss_dssp SSCCHHHHHHHH-CSSCEEEEEE
T ss_pred chhhhHHHHHhc-cCCCEEEeeC
Confidence 678888888776 4578887653
No 254
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=20.39 E-value=81 Score=23.02 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCcEEEEcCCcCccchHHHHHHHHHHhCCCeeeCC
Q 013746 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (437)
Q Consensus 219 ~rPvil~G~g~~~~~~~~~l~~lae~~g~pv~tt~ 253 (437)
.-|++++=+- ......++++|++.|+|++.++
T Consensus 16 ~aP~VvAKG~---~~~A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 16 PLPLVIETGK---DAKALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp SSCEEEEEEE---THHHHHHHHHHHHTTCCEEECH
T ss_pred CCCEEEEEeC---cHHHHHHHHHHHHcCCCEEeCH
Confidence 4577776322 1456889999999999999764
No 255
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=20.33 E-value=32 Score=32.77 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCc-CccchHHHHHHHHHHhCCCee---eCCCCCCCCC-CCCCCcccHHHHhchhcCCE
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGA-AYARAEGELKKLVESTGIPFL---PTPMGKGLLP-DTHPLAATAARSLAIGQCDV 280 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~-~~~~~~~~l~~lae~~g~pv~---tt~~gkg~~~-~~hp~~~G~~~~~~l~~aDl 280 (437)
+..+++.+++..++--.|..|-|. -.+++...+.+.++.++++++ +.|.. +. ...|++.-.....+.+.+|+
T Consensus 94 e~~d~I~~~le~~d~~~i~as~GGGTGSG~ap~la~~~ke~g~lt~~Vvt~Pf~---~Eg~~~~~nA~~~l~~L~e~~D~ 170 (353)
T 1w5f_A 94 ESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFY---FEGPERLKKAIEGLKKLRKHVDT 170 (353)
T ss_dssp HTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHccCCEEEEEeccCCCccccHHHHHHHHHHHhCCcEEEEEeCCcc---cccchhHHHHHHHHHHHHhhCCE
Confidence 345666677777777666766443 236777888899998887654 33321 00 00111111123456688999
Q ss_pred EEEEcC
Q 013746 281 ALVVGA 286 (437)
Q Consensus 281 vl~iG~ 286 (437)
+++|-.
T Consensus 171 ~ividN 176 (353)
T 1w5f_A 171 LIKISN 176 (353)
T ss_dssp EEEEEH
T ss_pred EEEEec
Confidence 999953
No 256
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.12 E-value=1.2e+02 Score=25.53 Aligned_cols=78 Identities=19% Similarity=0.157 Sum_probs=47.7
Q ss_pred cCccCCcHHHHHHHHHHhcCCCEEEecCCCChHH-HHHHHHhCCCcEeeccchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 013746 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (437)
Q Consensus 9 ~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~-l~~al~~~~i~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG 87 (437)
++...+...+-.++.|+++||+|=.++-|.|=.+ -+..+ +.. ++..| .-|+++ +-|
T Consensus 20 GS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~------------------~~~--a~~~g-~~ViIa--~AG 76 (173)
T 4grd_A 20 GSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDY------------------AEK--ARERG-LRAIIA--GAG 76 (173)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHH------------------HHH--HTTTT-CSEEEE--EEE
T ss_pred CcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHH------------------HHH--HHhcC-CeEEEE--ecc
Confidence 3445677889999999999999998988864332 11111 100 11112 224443 345
Q ss_pred hHhhHHHHHHhhhCCCcEEEEec
Q 013746 88 CVHGLAGLSNGMINTWPIVMISG 110 (437)
Q Consensus 88 ~~n~~~gi~~A~~~~~Pvl~I~g 110 (437)
..+.++|+..++. ..|||-+--
T Consensus 77 ~aahLpgvvA~~t-~~PVIgVPv 98 (173)
T 4grd_A 77 GAAHLPGMLAAKT-TVPVLGVPV 98 (173)
T ss_dssp SSCCHHHHHHHHC-CSCEEEEEE
T ss_pred ccccchhhheecC-CCCEEEEEc
Confidence 5677888877755 678887753
No 257
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=20.06 E-value=39 Score=32.66 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCcC-ccchHHHHHHHHHHhCCCeee---CCCCCCCCCC--CCCCcccHHHHhchhcCC
Q 013746 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLP---TPMGKGLLPD--THPLAATAARSLAIGQCD 279 (437)
Q Consensus 206 ~~~~~~~~~l~~a~rPvil~G~g~~-~~~~~~~l~~lae~~g~pv~t---t~~gkg~~~~--~hp~~~G~~~~~~l~~aD 279 (437)
+..+++.+++..+.--+|+.|-|.. .++....+.+.++.++++++. .|.. + | ..|++.-.....+.+.+|
T Consensus 84 e~~d~I~~~le~~d~~fI~asmGGGTGSG~ap~lae~~ke~g~ltvsVv~~Pf~---~-Eg~~r~ynA~~~l~~L~e~~D 159 (394)
T 2vaw_A 84 EDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFP---F-EGRKRMQIADEGIRALAESVD 159 (394)
T ss_dssp HTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCG---G-GHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEEecCCcc---c-ccchhhHHHHHHHHHHHHhCC
Confidence 3456677777778766666665443 356677888888888887553 2210 0 0 011111112235668899
Q ss_pred EEEEEcC
Q 013746 280 VALVVGA 286 (437)
Q Consensus 280 lvl~iG~ 286 (437)
++|+|-.
T Consensus 160 ~~ividN 166 (394)
T 2vaw_A 160 SLITIPN 166 (394)
T ss_dssp EEEEEEH
T ss_pred EEEEEec
Confidence 9999953
Done!