RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013746
(437 letters)
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 444 bits (1143), Expect = e-152
Identities = 205/465 (44%), Positives = 276/465 (59%), Gaps = 54/465 (11%)
Query: 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAAS 68
Q DG L +L L G ++GVVGIP+T LA A G+R+I F +EQSAG AA+
Sbjct: 5 DQLQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAA 64
Query: 69 AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELD 126
A G+LT KPG+ LTVS PG ++GL L+N N +P++MISGS +++ D +GD++ELD
Sbjct: 65 AAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124
Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
Q+ A KPF K A + ++ VA+ + AVSGRPGG YLDLP VL QT+ EA
Sbjct: 125 QLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALT 184
Query: 187 -LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
L+K + A + +D+A+ LLK+AK+PLI+ GKGAAYA+A+ ++++ VE T
Sbjct: 185 SLVKVVDPAPAQLPA----PEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKT 240
Query: 246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
GIPFLP M KGLLPDTHP +A AARSLA+ DV L+VGARLNWLL G+ W D K
Sbjct: 241 GIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKK 300
Query: 306 FVLVD--------------------------------------------AIWKKTKDNVL 321
F+ +D A+ ++ + N
Sbjct: 301 FIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAA 360
Query: 322 KMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRL 381
KM +L+ D P NF + IRD + +P LV+EGANT+D+ R ++ +PR RL
Sbjct: 361 KMAEKLSTDTQPMNFYNALGAIRDVL--KENPDIYLVNEGANTLDLARNIIDMYKPRHRL 418
Query: 382 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
D GTWG MG+G+GY IAAA+ + VVA+EGDS FGFS +EVE
Sbjct: 419 DCGTWGVMGIGMGYAIAAAVET-GKPVVAIEGDSAFGFSGMEVET 462
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 404 bits (1041), Expect = e-137
Identities = 208/461 (45%), Positives = 281/461 (60%), Gaps = 54/461 (11%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
A DG L +L L G ++GVVGIPVT LA A G+R+I F +EQSAGYAA+A G
Sbjct: 1 ALTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAG 60
Query: 72 YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVE 129
+LT KPG+ LTVS PG ++GL L+N N +P++MISGS ++ D +GD++E+DQ+
Sbjct: 61 FLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLA 120
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK-LL 188
A KPF+K A + ++ +A+ + AVSGRPGG YLDLP VL QT+ +A+K L+
Sbjct: 121 AAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLV 180
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
K + A + + +D+AV LLK+AK+PLI+ GKGAAYA+A+ E+++ VE TGIP
Sbjct: 181 KVVDPAPKQLPS----PDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIP 236
Query: 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
FLP M KGLLPDTHP +A AARS A+ + DV ++VGARLNWLL G+ W +D KF+
Sbjct: 237 FLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQ 296
Query: 309 VD--------------------------------------------AIWKKTKDNVLKME 324
VD AI K++ NV KM
Sbjct: 297 VDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMA 356
Query: 325 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 384
+L+ P N+ + IRD + +P LV+EGANT+D+ R V+ +PR RLD G
Sbjct: 357 ERLSASESPMNYHGALEAIRDVL--KDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVG 414
Query: 385 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
TWG MG+G+GY IAAA+ + VVA+EGDS FGFS +EVE
Sbjct: 415 TWGVMGIGMGYAIAAAVETGKP-VVALEGDSAFGFSGMEVE 454
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 286 bits (735), Expect = 2e-91
Identities = 128/457 (28%), Positives = 200/457 (43%), Gaps = 55/457 (12%)
Query: 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGY 72
+ G ++L G +FG+ G + L + G+R I +EQ A +AA Y
Sbjct: 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60
Query: 73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
TGKPG+ L SGPG + L GL++ +++ P++ I+G G FQE+DQV +
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
P +K+ + + ++P+ VA+ A+SGRPG +DLP DVL E +
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPY 180
Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
I KA LL EAK+P+I+ G G A A EL++L E G P + T
Sbjct: 181 RPAPP------PPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTT 234
Query: 253 PMGKGLLPDTHPLAA-------TAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
MGKG +P+ HPL+ T A + A+ + D+ L VGAR + + ++
Sbjct: 235 LMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG--YSGFAPPAA 292
Query: 306 FVLVD------------------------------------AIWKKTKDNVLKMEVQLAK 329
+ +D A ++ + +
Sbjct: 293 IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLALE 352
Query: 330 DVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGT 388
++ P +I+ + + I+V++ G + M R PR L +G GT
Sbjct: 353 ELADDGIK-PQYVIK-VLRELLPDDAIVVTDVGQHQMWAAR-YFDFYRPRRFLTSGGLGT 409
Query: 389 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
MG GL I A +A P+R VVA+ GD GF + E+E
Sbjct: 410 MGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELE 446
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 195 bits (497), Expect = 1e-56
Identities = 128/455 (28%), Positives = 207/455 (45%), Gaps = 61/455 (13%)
Query: 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG 75
LAA+ L G MF + G + L + A + G+R I +EQ+A +AA A+ LT
Sbjct: 7 AGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTR 66
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
PG+ + +GPG +G++ ++ N P+V++ G +G G QE+D V V P +
Sbjct: 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVT 126
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK 195
KFA A+ + V Q L+ AV+ G ++D P D S+++ + A
Sbjct: 127 KFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA---FSMADDDGR----PGAL 179
Query: 196 ETVTQGGIVNSD-IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
+ G + D + +A LL EA++P+I+ G + AE L +L E GIP L M
Sbjct: 180 TELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM 239
Query: 255 GKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFG------------------- 295
G+G++P HPLA + AR A+G+ DV LVVG +++ L FG
Sbjct: 240 GRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRA 299
Query: 296 -------------------------EPPKWSKDVKFVLVDAIWKKTKDNVLKMEVQLAKD 330
+ ++ + + +D LA D
Sbjct: 300 HHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAE-----LADD 354
Query: 331 VVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMG 390
P + PMR+ + + + I++ +G + + + P C LD G +G +G
Sbjct: 355 RDPIH---PMRVYGE-LAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLG 410
Query: 391 VGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
G GY +AA +A P R VV ++GD FGFS ++V+
Sbjct: 411 TGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVD 445
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 171 bits (436), Expect = 1e-47
Identities = 124/445 (27%), Positives = 197/445 (44%), Gaps = 53/445 (11%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
K+L G +FG G + + + I +EQ+A +AA Y +GK G+ +
Sbjct: 9 KALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCV 68
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
SGPG + + G++ ++ P++ ++G K G FQE+D + P +K +
Sbjct: 69 ATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQI 128
Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201
K E+P+ E A +GRPG ++DLP DV + + + K + T G
Sbjct: 129 KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKIDLPGYKPTTFG 188
Query: 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261
+ I KA L+ EA++P+I+ G G + A EL +L E IP T MGKG P+
Sbjct: 189 HPLQ--IKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPE 246
Query: 262 THPLA-------ATAARSLAIGQCDVALVVGARLN-----WLLHFG----------EPPK 299
HPLA T A + ++ + DV + +G R + + F +P +
Sbjct: 247 DHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAE 306
Query: 300 WSK----------DVKFVLVDAI------WKKTKDNVLKMEVQLAKDVVP-FNF----MT 338
K D K VL D + K K L+ +L K+ +P +F +
Sbjct: 307 IGKNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLKKESIPRMDFDDKPIK 366
Query: 339 PMRIIRDAILGVGSPAPILVSEGANTMDVGR-----AVLVQTE-PRCRLDAGTWGTMGVG 392
P R+I++ + + P T DVG+ A +T PR + +G GTMG G
Sbjct: 367 PQRVIKELMEVLREIDPS--KNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFG 424
Query: 393 LGYCIAAAIACPERLVVAVEGDSGF 417
I A +A P+ V+A+ GD GF
Sbjct: 425 FPAAIGAKVAKPDANVIAITGDGGF 449
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 160 bits (406), Expect = 1e-43
Identities = 125/448 (27%), Positives = 192/448 (42%), Gaps = 66/448 (14%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
+SL G +FG G +P+ G+ I +EQ A +AA Y +GK G
Sbjct: 9 ESLKDEGVKTVFGYPGGAILPIYDALYNDS--GIEHILVRHEQGAAHAADGYARASGKVG 66
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
++L SGPG + + G++ +++ P+V+ +G G FQE D + P +K +
Sbjct: 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHS 126
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
+ K ++P+ + + A +GRPG +DLP DV I EK+ + TV
Sbjct: 127 FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKV--NLPGYRPTV 184
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
I KA L+ AKKP+I+ G G A A ELK+L E IP T MG G
Sbjct: 185 KGH---PLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGS 241
Query: 259 LPDTHPLA-------ATAARSLAIGQCDVALVVGARL-----NWLLHFG----------E 296
P+ HPL+ T +LA+ +CD+ + VGAR L F +
Sbjct: 242 FPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDID 301
Query: 297 PPKWSK----------DVKFVLVDAI-----WKKTKDNVLKMEVQLAKDVVPFNF----- 336
P + K D + VL + + K+ K++ ++ K P
Sbjct: 302 PAEIGKNVRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYPLKMDYTEE 361
Query: 337 -MTPMRIIRDAILGVGSPAPILVSEGANTMDVGR----AVLVQT--EPRCRLDAGTWGTM 389
+ P ++I + + + E T DVG+ A +PR + +G GTM
Sbjct: 362 GIKPQQVIEEL-------SRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTM 414
Query: 390 GVGLGYCIAAAIACPERLVVAVEGDSGF 417
G GL I A +A PE V+ + GD F
Sbjct: 415 GFGLPAAIGAKVAKPESTVICITGDGSF 442
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 143 bits (363), Expect = 2e-41
Identities = 56/153 (36%), Positives = 87/153 (56%)
Query: 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
++L G H+FGV G + L + + G+R+I +EQ A A Y TGKPG
Sbjct: 2 ALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPG 61
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
++L SGPG + + GL+N +++ P+++I+G GRG FQE+DQV +P +K+A
Sbjct: 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWA 121
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
+ E+P+ + + A+SGRPG LDLP
Sbjct: 122 YRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 151 bits (382), Expect = 3e-40
Identities = 122/457 (26%), Positives = 203/457 (44%), Gaps = 48/457 (10%)
Query: 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASA 69
Q ++ G + L G T +FG G + + + + G++ I +EQ+A +AA
Sbjct: 11 QCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEG 70
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
Y +GK G++ SGPG + + GL++ +++ P+V+I+G G+ FQE D V
Sbjct: 71 YARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVG 130
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLK 189
P +K + +D+ ++ + V + A SGRPG +D+P DV ++ ++ E +
Sbjct: 131 ITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVV-- 188
Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
E K + ++ KA+S +AK+PL+ G G ++ EL + IP
Sbjct: 189 EIPGYKPEPRPDSMKLREVAKAIS---KAKRPLLYIGGGVIHSGGSEELIEFARENRIPV 245
Query: 250 LPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 302
+ T MG G P PL T A ++A+ +CD+ L +G R + + G+ +S
Sbjct: 246 VSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVT-GKLELFSP 304
Query: 303 DVKFVLVDAIWKKTKDNVLKMEVQLAKDVV-PFNFMTPMRII--RDAIL----------- 348
K V +D + NV +E + DV + + M I D L
Sbjct: 305 HSKKVHIDIDPSEFHKNV-AVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYP 363
Query: 349 -------GVGSPAPI--LVSEGAN-----TMDVGRAVLVQT------EPRCRLDAGTWGT 388
P + LVSE N T +VG+ + PR L +G GT
Sbjct: 364 LSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGT 423
Query: 389 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
MG G I A +A E LV+ + GD+ F + E++
Sbjct: 424 MGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQ 460
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 147 bits (373), Expect = 4e-39
Identities = 126/457 (27%), Positives = 187/457 (40%), Gaps = 65/457 (14%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASA 69
+ G L G +FG+ G + L A +R I +EQ+AGY A
Sbjct: 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS--CDQKDFGRGDFQEL-D 126
Y TG+PG+ V GPG ++ A L P++ ++G GRG E+ D
Sbjct: 62 YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
Q+ ++ F+K+A + + +E P VA+ ++ +SGRP L++P DV Q V+ A
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVAAAPP 181
Query: 187 LLKEAESAKETVTQGGIVNSD-IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
L A + D I A +L+ AK P+I G GAA A E+++L E
Sbjct: 182 LRPAPPPA---------PDPDAIAAAAALIAAAKNPMIFVGGGAAGAGE--EIRELAEML 230
Query: 246 GIPFLPTPMGKGLLPDTHPLAAT--AARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
P + G+G++ D HPL AA L Q DV + +G+RL L P
Sbjct: 231 QAPVVAFRSGRGIVSDRHPLGLNFAAAYEL-WPQTDVVIGIGSRL--ELPTFRWPWRPDG 287
Query: 304 VKFVLVD-------------AIWKKTKDNV-----------------------LKMEV-Q 326
+K + +D AI K LK Q
Sbjct: 288 LKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKAAARQ 347
Query: 327 LAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW 386
+ V P + +R IR+A+ G I V E + PR + G
Sbjct: 348 RIQAVQP--QASYLRAIREALPDDG----IFVDELSQVGFASWFAFPVYAPRTFVTCGYQ 401
Query: 387 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 423
GT+G G + A +A P+R VV++ GD GF F E
Sbjct: 402 GTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQE 438
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 136 bits (344), Expect = 3e-38
Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
A++L G H+FGV G + L + + G+R++ +EQ AG+AA Y TGKPG+
Sbjct: 8 AEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGKPGV 67
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFA 138
+L SGPG + L GL+N ++ P+++ISG D GRG Q ELDQ+ +P +K+A
Sbjct: 68 VLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVTKWA 127
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
+ E+P+ + + A+SGRPG YL+LP DV + + E
Sbjct: 128 ERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEVDEPE 172
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 143 bits (363), Expect = 1e-37
Identities = 120/459 (26%), Positives = 204/459 (44%), Gaps = 53/459 (11%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHN 59
M L++ ++ G+ L ++L G +FG G V L + G+R I +
Sbjct: 1 MEKISLESPKS----GSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARH 56
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ A + A Y TGK G+ + SGPG + + G+++ M ++ P+++ +G + G+
Sbjct: 57 EQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGK 116
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
FQE D V P +K+ + ++ ++P+ + + + A +GRPG +DLP DV +
Sbjct: 117 DAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV--SAL 174
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
S + T+ + I K + L +AKKP+I+ G G YA A EL
Sbjct: 175 ETDFIYDPEVNLPSYQPTLEPN---DMQIKKILKQLSKAKKPVILAGGGINYAEAATELN 231
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLL 292
E IP + T +G+G + +HPL + A ++A+ + D + +G+R + L
Sbjct: 232 AFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRL 291
Query: 293 HFGEPPKWSKDVKFVLVD----AIWKKTK-------DNVLKMEVQLAKDVVPFNFM---- 337
G P ++K+ K +D I K K D +++ LA+ V N
Sbjct: 292 -TGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIE 350
Query: 338 -------------TPMRIIR--DAILGVGS----PAPILVSEGANTMDVGRAVLVQTEPR 378
R+++ I +G A ++ G + M + Q E R
Sbjct: 351 KVTKDKNRVRSYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNE-R 409
Query: 379 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+ +G GTMG G+ I A IA P++ V+ GD GF
Sbjct: 410 QLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGF 448
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 142 bits (359), Expect = 4e-37
Identities = 118/443 (26%), Positives = 189/443 (42%), Gaps = 61/443 (13%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
K L G +FG G + + + +R I +EQ+A +AA Y TGK G+ +
Sbjct: 16 KCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCV 75
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
SGPG + + G++ +++ PIV ++G + G FQE D P +K
Sbjct: 76 ATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLV 135
Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201
+D ++P+ + + A +GRPG +DLP DV I +K+ E K T +G
Sbjct: 136 QDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKV--ELRGYKPT-YKG 192
Query: 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261
I +A L+ +A++P+I G G + A EL +L E+ P T MG G +P
Sbjct: 193 NP--QQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPT 250
Query: 262 THPLA-------ATAARSLAIGQCDVALVVGARLN--------------WLLHFG-EPPK 299
HPL+ T + AI + D+ + VGAR + ++H +P +
Sbjct: 251 EHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAE 310
Query: 300 WSKDVKF---VLVDAIW-----------KKTKD-----NVLKMEVQLA----KDVVPFNF 336
SK+VK ++ DA K+ N K E L +DV+ +
Sbjct: 311 ISKNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLKYKEREDVIKPQY 370
Query: 337 MTPM--RIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLG 394
+ + DAI I+ G + M + PR + +G GTMG G
Sbjct: 371 VIEQIYELCPDAI--------IVTEVGQHQMWAAQYFKY-KYPRTFITSGGLGTMGYGFP 421
Query: 395 YCIAAAIACPERLVVAVEGDSGF 417
I A + P++ V+ + GD F
Sbjct: 422 AAIGAKVGKPDKTVIDIAGDGSF 444
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 141 bits (358), Expect = 7e-37
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 59/406 (14%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ+A +AA Y +GK G+ + SGPG + + GL+ +++ P+V+ISG G
Sbjct: 50 EQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT 109
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
FQE+D V +P K K I E+P+ + + A SGRPG ++D+P DV
Sbjct: 110 DAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLG 169
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNS-DIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
+++ ++ K T NS I KA +KEAKKPL G GA + A E+
Sbjct: 170 EFEYPKEI--SLKTYKPTYKG----NSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEI 223
Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWL 291
++LV+ TGIP + T M +G+L PL + A ++A+ +CD+ + +GAR +
Sbjct: 224 RELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDR 283
Query: 292 LHFGEPPKWSKDVKFVLVD----AIWKKTK---------DNVLKMEVQLAKDVVPFNFMT 338
+ G+ +++K K + VD +I K NVLK ++ K+ P +
Sbjct: 284 VT-GKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENPTTYKE 342
Query: 339 PMRIIRD--------------------AILGVGSPAPILVSEGAN-TMDVGRAVL--VQ- 374
I++ I VG L+ + A + DVG+ + Q
Sbjct: 343 WREILKRYNELHPLSYEDSDEVLKPQWVIERVGE----LLGDDAIISTDVGQHQMWVAQF 398
Query: 375 ---TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
PR +G GTMG GL + A +A P+++V+ GD
Sbjct: 399 YPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSI 444
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 141 bits (357), Expect = 9e-37
Identities = 125/474 (26%), Positives = 207/474 (43%), Gaps = 69/474 (14%)
Query: 5 ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAG 64
++ + G + ++L G +FG G V L + G+ I +EQ A
Sbjct: 7 MSSKTEEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAI 66
Query: 65 YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE 124
+AA Y ++GKPG+++ SGPG + + GL++ MI++ P+V+ +G G FQE
Sbjct: 67 HAAEGYARISGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQE 126
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
D + P +K + + +++P+ + + A +GRPG +D+P D+ V E
Sbjct: 127 ADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM-----VVEEG 181
Query: 185 EKLLKEAESAKETVTQGGIVNSD-----IDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
E + G N + I K V + AKKP+I+ G G +A+A EL
Sbjct: 182 EF-----CYDVQMDLPGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELT 236
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLN--- 289
E IP + T +G G P HPL T ++A+ +CD+ + +GAR +
Sbjct: 237 SYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRV 296
Query: 290 --WLLHFG----------EPPKWSKDV----------KFVLVDAIWKKTK-DNVLKMEVQ 326
L +F +P + K+V K L + ++ K +N +
Sbjct: 297 TGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSL 356
Query: 327 LA--KDVVPFNF------MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVL--VQTE 376
L K+ P ++ + P + I + + + I+ T DVG+ + Q
Sbjct: 357 LKNWKEKYPLSYKRNSESIKPQKAI-EMLYEITKGEAIV------TTDVGQHQMWAAQYY 409
Query: 377 PRCRLD----AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
P D +G GTMG GL I A +A P+ VVA+ GD GF + E+ V
Sbjct: 410 PFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSV 463
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 139 bits (353), Expect = 3e-36
Identities = 80/250 (32%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC---VHGLA-GLSNGMINTWPIVM 107
++ I +EQ A + A+ YG LTGK G+ L+ GPG V G+A GM P+V
Sbjct: 39 IKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGGM----PMVA 94
Query: 108 ISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167
I+G K +G FQ +D V + P +K+ + +P+ V + A RPG +
Sbjct: 95 ITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVH 154
Query: 168 LDLPTDVLH-----QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPL 222
L+LP D+ + + S + + ++ I++A ++ AK PL
Sbjct: 155 LELPEDIAAEETDGKPLPRSYSRRPYASPKA--------------IERAAEAIQAAKNPL 200
Query: 223 IVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-TAARS------LAI 275
I+ G GA A L + V+ TGIPF T MGKG++P+THPL+ TA S AI
Sbjct: 201 ILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAI 260
Query: 276 GQCDVALVVG 285
D+ + VG
Sbjct: 261 EHADLIINVG 270
Score = 44.4 bits (106), Expect = 1e-04
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 388 TMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
TMG GL IAA + P+R V+AV GD GF
Sbjct: 407 TMGAGLPSAIAAKLVHPDRKVLAVCGDGGF 436
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 137 bits (346), Expect = 3e-35
Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 16/288 (5%)
Query: 14 IDGNTLAAKSLSLFGATHMFGVVGI---PVTSLANRAVQLG-VRFIAFHNEQSAGYAASA 69
G + SL G +FG+ G+ + + G +R + +EQ+A +AA
Sbjct: 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADG 61
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
Y +G PG+ SGPG + + GL ++ P++ I+G + G+ FQE D +
Sbjct: 62 YARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMG 121
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS-VSEAEKLL 188
+ +K+ + K I E+P+ + A +GRPG +D+P D+ ++ + + EK
Sbjct: 122 VFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEK-- 179
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ ++ T+ I + KA +L A++P+I+ G G ++ A E+ +L E IP
Sbjct: 180 PLVKGYRDFPTR--IDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIP 237
Query: 249 FLPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLN 289
+ T GK +P HPL A S+A + D LVVGAR +
Sbjct: 238 IVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFS 285
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 137 bits (346), Expect = 3e-35
Identities = 110/416 (26%), Positives = 182/416 (43%), Gaps = 73/416 (17%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ A +AA Y TGK G+ SGPG + + G++ +++ P+++I+G + G
Sbjct: 60 EQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT 119
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV----- 174
FQE+D P K + +D ++ + VA+ A GRPG +D+P DV
Sbjct: 120 DAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKF 179
Query: 175 -LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+ + K+L K T+ + I++A L+ ++ +PL+ G GA +
Sbjct: 180 DYYPPEPGNTIIKILGCRPIYKPTIKR-------IEQAAKLILQSSQPLLYVGGGAIISD 232
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA 286
A E+ +L E IP T MGKG+ + HPL TA + A+ +CD+ + +GA
Sbjct: 233 AHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGA 292
Query: 287 RLN--------------WLLHFG-EPPKWSK----------DVKFVLVD--AIWKKTKDN 319
R + ++H +P + K DVK VL + + K + +
Sbjct: 293 RFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPNL 352
Query: 320 VLKMEVQ-------LAKDVVPF------NFMTPMRIIRDAILGVGSPAPILVSEGANTMD 366
+ + Q + P ++P +I + + AP + T D
Sbjct: 353 LESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINE----ISQLAP----DAYFTTD 404
Query: 367 VGR-----AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
VG+ A ++ +PR L + GTMG GL I A IA P LV+ + GD+ F
Sbjct: 405 VGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASF 460
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 128 bits (323), Expect = 3e-35
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 355 PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
I+VS+G NTMD R +L +PR RLDAGT+GT+GVGLGY IAAA+A P++ VV VEGD
Sbjct: 16 AIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGD 75
Query: 415 SGFGFSAVEVE 425
FGFS +E+E
Sbjct: 76 GAFGFSGMELE 86
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 135 bits (341), Expect = 2e-34
Identities = 127/470 (27%), Positives = 202/470 (42%), Gaps = 66/470 (14%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLG-VRFIA 56
+ S Q + G SL G H+FG G +P+ +A G ++ I
Sbjct: 8 IGDSTTVTPQ--RATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHIL 65
Query: 57 FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD 116
+EQ A +AA Y TGK G+ SGPG + + G++ +++ P+V+I+G +
Sbjct: 66 VRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPA 125
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV-- 174
G FQE D P K + +D +++ + VA+ A SGRPG +D+P DV
Sbjct: 126 IGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQ 185
Query: 175 -LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+ V + TV I+ A+ L++EA++PL+ G GA A
Sbjct: 186 EEFDYVPVEPGSVKPP---GYRPTVK---GNPRQINAALKLIEEAERPLLYVGGGAISAG 239
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA 286
A ELK+L E IP T MGKG + HPL+ TA + A+ +CD+ + VGA
Sbjct: 240 AHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGA 299
Query: 287 RLN--------------WLLHFG-EPPKWSK----------DVKFVLVDAIWKKTKDNVL 321
R + ++H +P + K DV+ VLV + +++ +
Sbjct: 300 RFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVK-LLERSLEPTT 358
Query: 322 KMEVQ--LA-----KDVVPFNFMTPMRII--RDAILGVGSPAPILVSEGANTMDVGR--- 369
Q L K P I ++ +L V AP + T DVG+
Sbjct: 359 PPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAP----DAYYTTDVGQHQM 414
Query: 370 --AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
A ++ PR + + GTMG G+ + +A P+ V+ + GD+ F
Sbjct: 415 WAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASF 464
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 128 bits (323), Expect = 3e-32
Identities = 108/405 (26%), Positives = 170/405 (41%), Gaps = 52/405 (12%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
+R I +EQ AG+ A TGKP + + SGPG + + +++ +++ P+V I+G
Sbjct: 52 IRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQ 111
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
G FQE+D P +K +DI E+P+ ++ A SGRPG ++D+P
Sbjct: 112 VPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIP 171
Query: 172 TDVLHQTISVSE-AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA 230
DV I + K+A A + I A +++ AK+P++ G G
Sbjct: 172 KDVQTAVIELEALPAPAEKDAAPAFDE--------ESIRDAAAMINAAKRPVLYLGGGVI 223
Query: 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-----ATAARS--LAIGQCDVALV 283
+ A ++L E +P T M G+LP HPL+ ARS + + D+ +V
Sbjct: 224 NSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIV 283
Query: 284 VGARLN--------------WLLHFG-EPPKWSK----------DVKFVLVDAIWKKTKD 318
+GAR + ++H + + K DV VL + +
Sbjct: 284 LGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVL-AQLLPLVEA 342
Query: 319 NVLKMEVQLAKDV---VPFNF------MTPMRIIRDAILGVGSPAPILVSEGANTMDVGR 369
QL D+ P ++ +I V A I G + M +
Sbjct: 343 QPRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQ 402
Query: 370 AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
A + PR L +G GTMG GL I AA+A PER V+ GD
Sbjct: 403 AYPLN-RPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGD 446
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 118 bits (298), Expect = 5e-32
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-- 265
IDKA LL AK+P+I+ G G + A EL+ L E GIP + T MGKG P+ HPL
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 266 -----AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
T A + A+ + D+ L +GAR + G P+++ D K + +D
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDD-RGTGSLPEFAPDAKIIHID 109
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 123 bits (311), Expect = 1e-30
Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 13/297 (4%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHN 59
+ +E + A G + K+L+ G ++G G V + + Q ++ + +
Sbjct: 8 FSTAESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRH 67
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ+A +AA Y TGK G+ L SGPG + + G++ +++ P+V+ISG G+
Sbjct: 68 EQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQ 127
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
FQE D V +P K KD+ ++ + V + A +GRPG +D+P DV
Sbjct: 128 DAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPC 187
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
+ + E S VT+G + I KAVSLL AK+P I G G A A EL+
Sbjct: 188 EYEYPKSV--EMRSYN-PVTKGH--SGQIRKAVSLLLSAKRPYIYTGGGVILANASRELR 242
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLN 289
+L + G P T MG G P + + T ++A+ CDV + +GAR +
Sbjct: 243 QLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFD 299
Score = 36.7 bits (85), Expect = 0.025
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
EPR +++G GTMGVGL Y + +A P+ VV + G+
Sbjct: 426 EPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGE 464
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 124 bits (312), Expect = 1e-30
Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 15/292 (5%)
Query: 7 QNSQNA-QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAG 64
Q S Q+ G + ++L G H+FG G V + + Q ++ I +EQ AG
Sbjct: 3 QKSHMPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAG 62
Query: 65 YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE 124
+AA Y TGKPG++L SGPG + + L + ++++ P+V I+G G FQE
Sbjct: 63 HAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQE 122
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
D V +P +K KD+ ++ + + + A SGRPG +D+P DV T + +
Sbjct: 123 CDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYTPP 182
Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA--AYARAEGELKKLV 242
+K + + +G I +AV LL AK+P+I G G + A L++LV
Sbjct: 183 QKA--PVHVSYQPKVKGDA--EAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELV 238
Query: 243 ESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGAR 287
E TG P T MG G P + + T ++A+ CDV L VGAR
Sbjct: 239 ELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGAR 290
Score = 33.9 bits (78), Expect = 0.17
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 415
EP + +G GTMG GL + IA P+ LV+ + GD+
Sbjct: 419 EPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDA 458
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 122 bits (309), Expect = 2e-30
Identities = 116/456 (25%), Positives = 175/456 (38%), Gaps = 80/456 (17%)
Query: 24 LSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV 83
L +G +FG+ G+ L G+R + +EQ AG+ A Y ++GKPG+ +
Sbjct: 12 LEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFII 71
Query: 84 SGPGCVHGLAGLSNGMINTWPIVMISG--SCDQKDFGRGDFQEL-DQVEAVKPFSKFAVK 140
+GPG + + ++ P+++IS GRG EL DQ V + F+
Sbjct: 72 TGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHT 131
Query: 141 AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQ 200
++P+ +A+ S RP ++++P DVL + A+ LL + +
Sbjct: 132 LMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL-----AAPADHLLP---APPTRPAR 183
Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
G + + +A L A++PLI+ G GA A L+ L E P T KGLLP
Sbjct: 184 PGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLDAPVALTINAKGLLP 241
Query: 261 DTHPLAATAARS--------------LAIG------------------------------ 276
HPL A++S LA+G
Sbjct: 242 AGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPD 301
Query: 277 ------QCDVALVVGAR--LNWLLHFGEPPKWSKDVKFVLVDAIWKKTKDNVLKMEVQLA 328
+ALV AR L LL + D V A+ + L
Sbjct: 302 QLARNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQ-----------ALR 350
Query: 329 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGT-WG 387
+ P + D IL P I V + + G PR +A T +G
Sbjct: 351 AEWDPL--TAAQVALLDTILAA-LPDAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYG 407
Query: 388 TMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 423
T+G GL I AA+ PER VV + GD G F+ E
Sbjct: 408 TLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPE 443
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 123 bits (309), Expect = 2e-30
Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 11/286 (3%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRA-VQLGVRFIAFHNEQSAGYAASAY 70
+ G ++ +SL G H+FG G V + + + G+ I +EQ+A + A Y
Sbjct: 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61
Query: 71 GYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA 130
TGK G++L SGPG + + G++ +++ P+V++SG G FQE D +
Sbjct: 62 ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKE 190
+P K + KD ++P+ + + A +GRPG +DLP D L+ I +
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYEYPESIK 181
Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
S T + I + + L AKKP++ G GA + A+ ++ +L E +P +
Sbjct: 182 MRSYNPTTSGH---KGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVV 238
Query: 251 PTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLN 289
T MG G P TH + ++A+ D+ +G R +
Sbjct: 239 STLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFD 284
Score = 33.6 bits (77), Expect = 0.23
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
+PR +++G GTMG GL + A P+ VV V GD
Sbjct: 410 KPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGD 448
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 122 bits (308), Expect = 5e-30
Identities = 96/299 (32%), Positives = 136/299 (45%), Gaps = 30/299 (10%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
G T FGV G + A R G+R I + + A + A Y T G G+ + S
Sbjct: 18 GVTTAFGVPGAAINPFYSAMRKHG-GIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 76
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GP + GL + ++ PI+ I+G + + DFQ +D KP +K+AV ++
Sbjct: 77 GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREP 136
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI----SVSEAEKLLKEAESAKETVTQ 200
VP+ Q SGRPG +DLP DV I E + K A + +
Sbjct: 137 ALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVYKPAATRAQ---- 192
Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
I+KA+ +L A++PLIV G G A A L + E TG+P +PT MG G +P
Sbjct: 193 -------IEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIP 245
Query: 261 DTHPLAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVD 310
D HPL A T+ R + + D L +G R W H G ++K KFV VD
Sbjct: 246 DDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNR--WANRHTGSVEVYTKGRKFVHVD 302
Score = 33.0 bits (76), Expect = 0.32
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 393 LGYCIAAAI----ACPERLVVAVEGDSGFGFSAVEVEV 426
LG+ I AA+ A P+R VVA+ GD F F E+ V
Sbjct: 421 LGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAV 458
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 121 bits (305), Expect = 9e-30
Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 33/306 (10%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
++L G TH FG++G + + L A G+RFI +EQ+AG+ A Y +TG+ G
Sbjct: 14 ETLQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMG 70
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
+++ +GPG + + ++ P+V+++ K G+G FQE +Q+ + +K+
Sbjct: 71 MVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQ 130
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
+ +D + + + + +V ++A G +++P D + I V + + E + E
Sbjct: 131 EEVRDPSRMAEVLNRVFDKAKRES-GPAQINIPRDYFYGVIDVEIPQPVRLERGAGGE-- 187
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
+ +A LL EAK P+I+ G G + A E K L E P +
Sbjct: 188 -------QSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDA 240
Query: 259 LPDTHPLAA--------TAARSLAIGQCDVALVVGARLNWLLHFGEPPK-----WSKDVK 305
P +HPL AA L I + DV L +G RLN FG P+ W KD K
Sbjct: 241 FPGSHPLWVGPLGYNGSKAAMEL-IAKADVVLALGTRLN---PFGTLPQYGIDYWPKDAK 296
Query: 306 FVLVDA 311
+ VD
Sbjct: 297 IIQVDI 302
Score = 53.8 bits (130), Expect = 1e-07
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 335 NFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLG 394
++M P + +R I I+ ++ N + + L + R L G++G G
Sbjct: 384 DYMHPRQALR-EIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFP 442
Query: 395 YCIAAAIACPERLVVAVEGDSGFGFSAVEV 424
I A IACP+R VV GD +G S EV
Sbjct: 443 AIIGAKIACPDRPVVGFAGDGAWGISMNEV 472
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 120 bits (303), Expect = 2e-29
Identities = 83/277 (29%), Positives = 134/277 (48%), Gaps = 19/277 (6%)
Query: 22 KSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKP 77
+SL G +FG+ G +PV L + VR + +EQ AG+AA Y TG+
Sbjct: 39 RSLEELGVDVVFGIPGGAILPVYDPLFDST---KVRHVLVRHEQGAGHAAEGYAQATGRV 95
Query: 78 GILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKF 137
G+ + SGPG + + +++ +++ P+V I+G + G FQE D V P +K
Sbjct: 96 GVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKH 155
Query: 138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKET 197
D ++P+ +A+ A +GRPG +D+P D L + S ++
Sbjct: 156 NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRM---DLPGYRP 212
Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
VT+ I +A L+ A++P++ G G A A EL++L E TGIP + T M +G
Sbjct: 213 VTKPH--GKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARG 270
Query: 258 LLPDTHPLA-------ATAARSLAIGQCDVALVVGAR 287
PD+HP T A A+ + D+ + +GAR
Sbjct: 271 AFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGAR 307
Score = 35.0 bits (81), Expect = 0.079
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 377 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
PR L++G GTMG + + A + P++ V A++GD F
Sbjct: 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCF 477
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 119 bits (300), Expect = 4e-29
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 16/245 (6%)
Query: 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
L SL G ++FG+ G + + + G I +EQ+A + A+A G LTGKPG
Sbjct: 10 LVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPG 69
Query: 79 ILLTVSGPGCVHGLAGLSNGMI--NTW--PIVMISGSCDQKDFGRGDFQELDQVEAVKPF 134
++L SGPG + L+ G++ P+V I G + D + Q +D V +P
Sbjct: 70 VVLVTSGPGV----SNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPI 125
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESA 194
+K++ + +D + + +A A SGRPG ++ LP DV+ ++ +A +
Sbjct: 126 TKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTS--------KAIAP 177
Query: 195 KETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
G DI+ L+K AK P+++ G A+ +++L+E T +P + T
Sbjct: 178 LSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQ 237
Query: 255 GKGLL 259
G++
Sbjct: 238 AAGVI 242
Score = 49.5 bits (119), Expect = 2e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 388 TMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
T+GV L + IAAA+ P + VV+V GD GF FSA+E+E
Sbjct: 415 TLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELE 452
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 118 bits (297), Expect = 1e-28
Identities = 122/480 (25%), Positives = 183/480 (38%), Gaps = 115/480 (23%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASA 69
A+I K L +G H++G+ G + ++ A R Q ++FI +E+ A AA+A
Sbjct: 2 AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAA 61
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
Y LTGK G+ L++ GPG +H L GL + ++ P++ ++G G FQE V
Sbjct: 62 YAKLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQE---VN 118
Query: 130 AVKPFSKFAVKAKDITE---VPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI---SVSE 183
K F AV I +P+ V Q + A + G L +P D+ Q I +
Sbjct: 119 LEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTIPDDLPAQKIKDTTNKT 177
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
+ S K DI KA L+ +AKKP+I+ G GA +A+ E L E
Sbjct: 178 VDTFRPTVPSPKPK---------DIKKAAKLINKAKKPVILAGLGAKHAKEE--LLAFAE 226
Query: 244 STGIPFLPTPMGKGL------------------------------------------LPD 261
IP + T KG+ LP
Sbjct: 227 KAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVDYLPK 286
Query: 262 THPLAATAARSLAIGQ---CDVALV--VGARLNWLLHFGEPPKWSKDVKFVLVDAIWKKT 316
IG+ +V LV L+ L + +D +F+ +
Sbjct: 287 KAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKH---VEDRRFL------EAC 337
Query: 317 KDNVLK----MEVQLAKDVVPFNFMTPMRIIR--------DAILGVGSPAPILVSEGANT 364
++N+ K ME P + P R++ DA+L V
Sbjct: 338 QENMAKWWKWMEEDENNASTP---IKPERVMAAIQKIADDDAVLSV-------------- 380
Query: 365 MDVGRAVLVQT-----EPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEGDSGFG 418
DVG + + +W GTMG GL IAA IA P+R +A+ GD GF
Sbjct: 381 -DVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFS 439
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 117 bits (296), Expect = 1e-28
Identities = 77/280 (27%), Positives = 117/280 (41%), Gaps = 23/280 (8%)
Query: 21 AKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
+L G +F V G + V +L + +R I E A A AYG LTG+
Sbjct: 15 VDALRANGVERVFCVPGESYLAVLDALHDET---DIRVIVCRQEGGAAMMAEAYGKLTGR 71
Query: 77 PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK 136
PGI GPG + G+ ++ P+++ G + R FQE+D P +K
Sbjct: 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAK 131
Query: 137 FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKE 196
+ + D +P+ V++ A SGRPG L LP DVL +T V +A
Sbjct: 132 WVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPY--------- 182
Query: 197 TVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK 256
+D+ + LL A++PL++ G A +L+ E G+P +
Sbjct: 183 RRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQ 242
Query: 257 GLLPDTHPLAA-----TAARSLA--IGQCDVALVVGARLN 289
L + HP A +LA I + D+ L VG RL
Sbjct: 243 DLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLG 282
Score = 41.0 bits (97), Expect = 0.001
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 383 AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
A T G+MG GL IAA + PER VVA GD F
Sbjct: 411 APTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCF 445
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 117 bits (295), Expect = 2e-28
Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 16/244 (6%)
Query: 51 GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
GV + +EQ A AA Y TGK G+ + SGPG + + GL++ ++++ P+V I+G
Sbjct: 38 GVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITG 97
Query: 111 SCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170
G FQE+D + +K + + + E+P+ +A+ E A SGRPG +D+
Sbjct: 98 QVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDI 157
Query: 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA 230
P D+ ++ E E L E+ +++++A +LL +AKKP++ G G
Sbjct: 158 PKDIQ---LAEGELEPHLTTVENEPA------FPAAELEQARALLAQAKKPVLYVGGGVG 208
Query: 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALV 283
A A L++ + +TG+P + T G G + HP + T A +LA+ +CD+ +
Sbjct: 209 MAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIA 268
Query: 284 VGAR 287
VGAR
Sbjct: 269 VGAR 272
Score = 42.6 bits (101), Expect = 3e-04
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
T P + + GTMG GL I A +A P+ V+ V GD F
Sbjct: 389 TRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSF 431
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 116 bits (293), Expect = 3e-28
Identities = 128/456 (28%), Positives = 191/456 (41%), Gaps = 72/456 (15%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
G T FGV G + A +A G+R I + + A + A Y T G G+ + S
Sbjct: 17 GITTAFGVPGAAINPFYSALKA-HGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 75
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GP + GL + ++ PI+ I+G + + DFQ +D KP SK AV ++
Sbjct: 76 GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREA 135
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
VP+ + Q SGRPG +DLP DV V+E E E V +
Sbjct: 136 ALVPRVLQQAFHLMRSGRPGPVLIDLPFDV-----QVAEIEFDPDTYEPL--PVYKPAAT 188
Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
+ I+KAV +L A++PLIV G G A A L++ E TG+P +PT MG G +PD H
Sbjct: 189 RAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHE 248
Query: 265 LAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVD----- 310
L A T+ R + + + D +G R W H G +++ KFV VD
Sbjct: 249 LMAGMVGLQTSHRYGNATLLESDFVFGIGNR--WANRHTGSVDVYTEGRKFVHVDIEPTQ 306
Query: 311 ---------AIWKKTKDNVLKMEVQLAK-------------------------------D 330
I K LK+ V++A+ D
Sbjct: 307 IGRVFAPDLGIVSDAK-AALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFD 365
Query: 331 VVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMG 390
VP + P R+ + G + + G + + G +L +PR ++ G G +G
Sbjct: 366 NVP---VKPQRVYEEMNKAFGRDVCYVTTIGLSQI-AGAQMLHVYKPRHWINCGQAGPLG 421
Query: 391 VGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
+ + A P+R VVA+ GD F F E+ V
Sbjct: 422 WTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAV 457
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 116 bits (292), Expect = 4e-28
Identities = 85/305 (27%), Positives = 135/305 (44%), Gaps = 31/305 (10%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
+ L G TH FG++G + G+RFI +EQ AG+ A + +TG+ +++
Sbjct: 10 EVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVI 69
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
+GPG + + ++ P+V+++ K G G FQE DQ+ + F+K+
Sbjct: 70 GQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHV 129
Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVS--EAEKLLKEAESAKETVT 199
+ + + + + + ERA G L++P D + I V +L + A A
Sbjct: 130 RHPSRMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVEIPRPVRLDRGAGGATS--- 185
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
+ +A LL EAK P+I+ G G A E K L E G P + + +
Sbjct: 186 --------LAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSF 237
Query: 260 PDTHPL--------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPK-----WSKDVKF 306
P +HPL + AA L I DV L +G RL FG P+ W K+ K
Sbjct: 238 PASHPLWVGPLGYQGSKAAMKL-ISDADVVLALGTRLG---PFGTLPQYGIDYWPKNAKI 293
Query: 307 VLVDA 311
+ VDA
Sbjct: 294 IQVDA 298
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 116 bits (291), Expect = 5e-28
Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 8/244 (3%)
Query: 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG 75
G L L G ++FG+ G + + + G+ I +EQ+A + A A G +TG
Sbjct: 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITG 60
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
KPG+ L SGPGC + + GL+ P+V I G + D + Q +D V +P +
Sbjct: 61 KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPIT 120
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK 195
K++ + +D + + VA A SG+PG ++ LP DV+ +SV +A A
Sbjct: 121 KYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSV--------KAIPAS 172
Query: 196 ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
G + ID+ ++ AK P+++ G A+ +++L++ T +P + T G
Sbjct: 173 YAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232
Query: 256 KGLL 259
G +
Sbjct: 233 AGAV 236
Score = 47.8 bits (114), Expect = 7e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 388 TMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
T+GV L + I AA+ P VV+V GD GF FS++E+E
Sbjct: 409 TLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELE 446
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 116 bits (291), Expect = 6e-28
Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 11/284 (3%)
Query: 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGY 72
+ G + +SL G +FG G V + + +G + + +EQ+A + A
Sbjct: 4 LSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLAR 63
Query: 73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
TG+ G++L SGPG + + G++ +++ P+V++SG G FQE D V +
Sbjct: 64 ATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISR 123
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
P K + K ++P+ + + A SGRPG +DLP D+L+ +
Sbjct: 124 PVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMR 183
Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
S T QG I +A+ L AKKP++ G GA A +LK+LVE +P + +
Sbjct: 184 SYNPTT-QGH--KGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSS 240
Query: 253 PMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLN 289
MG G P TH + T ++ + DV VG R +
Sbjct: 241 LMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFD 284
Score = 35.2 bits (81), Expect = 0.061
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
+PR +++G GTMG GL + +A PE VV V GD
Sbjct: 410 KPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGD 448
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 114 bits (286), Expect = 2e-27
Identities = 107/460 (23%), Positives = 183/460 (39%), Gaps = 73/460 (15%)
Query: 35 VVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG--KPGILLTVSGPGCVHGL 92
+ G PV L + A G+R + E+ A + A Y T + G+ GPG +
Sbjct: 38 LFGFPVNELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGAENAF 97
Query: 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCV 151
G++ ++ P++ + + G D + + + +K+ + EVP+ +
Sbjct: 98 GGVAQAYGDSVPVLFLPTGYPR---GSTDVAPNFESLRNYRHITKWCEQVTLPDEVPELM 154
Query: 152 AQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKA 211
+ R +GRPG L+LP DVL + + + ++ + V ++ +A
Sbjct: 155 RRAFTRLRNGRPGPVVLELPVDVLAEELDELPLDH-----RPSRRSRPGADPV--EVVEA 207
Query: 212 VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA----- 266
+LL A++P+I G+G YA+A ELK+L E IP + T GK P+ HPLA
Sbjct: 208 AALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGG 267
Query: 267 ----ATAARSLAIGQCDVALVVGARLN------------WLLHFG-EPPKWSKDV----- 304
AT A L + DV +G L ++H + +KD
Sbjct: 268 RARPATVAHFLR--EADVLFGIGCSLTRSYYGLPMPEGKTIIHSTLDDADLNKDYPIDHG 325
Query: 305 -----KFVLVDAIWKKTKDNVL----------------------KMEVQLAKDVVPFNFM 337
VL + ++ + V K +L D P N
Sbjct: 326 LVGDAALVL-KQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPIN-- 382
Query: 338 TPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCI 397
P R++ + V I+ + + D V + P L G +G GLG +
Sbjct: 383 -PYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAM 441
Query: 398 AAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 437
A +A P+ LV+ + GD+ FG + ++ E + I I +I
Sbjct: 442 GAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPILTI 481
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 112 bits (283), Expect = 6e-27
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 32/255 (12%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
+R + +EQ +AA Y +GK G+ + SGPG + + GL++ ++++ P+V I+G
Sbjct: 52 IRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQ 111
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
++ G FQE VE + +K D+ ++P+ + + A SGRPG +D+P
Sbjct: 112 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIP 171
Query: 172 TDVLHQTISV----------SEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKP 221
D+ Q ++V +L K E ++ +++ V L+ E+K+P
Sbjct: 172 KDI-QQQLAVPNWNQPMKLPGYLSRLPKPPEKSQ------------LEQIVRLISESKRP 218
Query: 222 LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLA 274
++ G G + E L++ VE TGIP T MG G P + L+ T + A
Sbjct: 219 VVYVGGGCLNSSEE--LREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYA 276
Query: 275 IGQCDVALVVGARLN 289
+ D+ L G R +
Sbjct: 277 VDSADLLLAFGVRFD 291
Score = 39.7 bits (93), Expect = 0.003
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
EPR L +G G MG GL I AA A P+ +VV ++GD F
Sbjct: 415 EPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSF 456
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 112 bits (281), Expect = 1e-26
Identities = 94/295 (31%), Positives = 139/295 (47%), Gaps = 22/295 (7%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
G T FGV G + A R G+R I + + A + A Y T G G+ + S
Sbjct: 18 GITTAFGVPGAAINPFYSALRKHG-GIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 76
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GP + GL + ++ PI+ I+G + + DFQ +D KP SK+AV ++
Sbjct: 77 GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREP 136
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
VP+ + Q SGRPG +DLP DV V+E E E V +
Sbjct: 137 ALVPRVLQQAFHLMRSGRPGPVLIDLPFDV-----QVAEIEFDPDMYEPL--PVYKPAAT 189
Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
+KA+++L +A++PLIV G G A A L++ E TG+P +PT MG G +PD HP
Sbjct: 190 RVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHP 249
Query: 265 LAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVD 310
L A T+ R + + D+ +G R W H G +++ KF+ VD
Sbjct: 250 LMAGMVGLQTSHRYGNATLLASDMVFGIGNR--WANRHTGSVEVYTEGRKFIHVD 302
Score = 30.6 bits (69), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
+PR ++ G G +G + + A P+R VVA+ GD F F E+ V
Sbjct: 408 KPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAV 458
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 111 bits (279), Expect = 2e-26
Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 20/250 (8%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
V I +EQ+A + A Y TGK G++L SGPG + + G++ +++ P+V++SG
Sbjct: 43 VEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQ 102
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
G FQE D V +P K + K +E+P+ + + A SGRPG +D+P
Sbjct: 103 VPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162
Query: 172 TDVLHQTISVSEAEKLLKE-AESAK----ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226
D+ + AEK E + K +G + I KAV +L AK+P+I G
Sbjct: 163 KDM------TNPAEKFEYEYPKKVKLRSYSPAVRGH--SGQIRKAVEMLLAAKRPVIYSG 214
Query: 227 KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCD 279
G A L +L +P T MG G P T + T ++A+ D
Sbjct: 215 GGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHAD 274
Query: 280 VALVVGARLN 289
V L VGAR +
Sbjct: 275 VILAVGARFD 284
Score = 40.9 bits (96), Expect = 0.001
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
+P +++G GTMG GL + +A P++ V V G+
Sbjct: 412 KPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGE 450
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 111 bits (279), Expect = 2e-26
Identities = 78/293 (26%), Positives = 127/293 (43%), Gaps = 17/293 (5%)
Query: 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAAS 68
A++L G +FG +P ++L A +G+R IA+ E + G A
Sbjct: 9 GFTLNGTVAHAIARALKRHGVEQIFGQ-SLP-SALFLAAEAIGIRQIAYRTENAGGAMAD 66
Query: 69 AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQV 128
Y ++GK ++ +GP +A L+ + + PIV + ++ R FQELD +
Sbjct: 67 GYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHI 126
Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
+ +K+ + + V Q A SGRPG L LP D+L + + A
Sbjct: 127 ALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLT---AAAAAPAAP 183
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ + + + +A SLL +A++P++V G G + A L L G+P
Sbjct: 184 RSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLP 243
Query: 249 FLPTPMGKGLLPDTHPLAA------TAARSLA------IGQCDVALVVGARLN 289
T MGKG + +THPL+ RS + + DV L+VG R N
Sbjct: 244 VATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTN 296
Score = 32.8 bits (75), Expect = 0.38
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 389 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
+G G+ I A +A P V+ + GD GF E+E
Sbjct: 439 LGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELE 475
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 111 bits (278), Expect = 3e-26
Identities = 114/459 (24%), Positives = 191/459 (41%), Gaps = 70/459 (15%)
Query: 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYG 71
++ G + +SL G ++FG G V + + L G+ + +EQ+A + A Y
Sbjct: 3 KLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYA 62
Query: 72 YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV 131
TGK G +L SGPG + + G++ ++ P+V++SG G FQE D +
Sbjct: 63 RSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGIS 122
Query: 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEA 191
+P K + K+ ++P + + A +GRPG +D+P D+ V+ A K E
Sbjct: 123 RPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM------VNPANKFTYEY 176
Query: 192 ESAKETVTQGGIVNS---DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ V I KA+ L AKKP++ G G A +L + + +P
Sbjct: 177 PEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLP 236
Query: 249 FLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLN------------ 289
+ MG G P T + T + A+ + D+ L +G R +
Sbjct: 237 VTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCP 296
Query: 290 --WLLHFG-EPPKWSKDV----------KFVLVDAIWKKTKDNVLKMEVQL--------- 327
++H +P SK+V K VL + + ++N+ K + L
Sbjct: 297 NAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINE 356
Query: 328 --AKDVVPFN----FMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT------ 375
AK + F+ + P +++ AI + + + S DVG+ +
Sbjct: 357 WKAKKCLEFDRTSDVIKPQQVVE-AIYRLTNGDAYVAS------DVGQHQMFAALHYPFD 409
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
+PR +++G GTMG GL I A PE VV V GD
Sbjct: 410 KPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGD 448
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 103 bits (260), Expect = 6e-24
Identities = 114/459 (24%), Positives = 173/459 (37%), Gaps = 76/459 (16%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
L+ G +FGV G SL ++ + G+R++ NE +A YAA Y L G
Sbjct: 11 FDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGI-SA 69
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVE 129
L+T G G + L G++ P+V I G G GDF+
Sbjct: 70 LVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFK--VFHR 127
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAV-SGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
K + DI P+ + +V+ A+ RP Y+ LP DV I L
Sbjct: 128 MSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPV--YIGLPADVADLPIEAPLTPLDL 185
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ S E ++ ID L+ +AKKP+I+ + E ELKKL+ +TG P
Sbjct: 186 QLKTSDPE------ALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFP 239
Query: 249 FLPTPMGKGLLPDTHP---------LAATAARSLAIGQCDVALVVGARL----NWLLHFG 295
PMGKG++ ++HP L+ R A+ D+ L +G L +
Sbjct: 240 VATLPMGKGVIDESHPNYLGVYNGKLSEPEVRE-AVESADLILTIGVLLTDFNTGGFTYQ 298
Query: 296 EPPKWSKDVKFVLVDAIWKKTKDNV---LKM------------EVQLAKDVVPFNFMTPM 340
P + + K KD V L M + L+ V + TP
Sbjct: 299 YKPA-----NIIEIHPDSVKIKDAVFTNLSMKDALQELAKKIDKRNLSAPPVAYPARTPP 353
Query: 341 RIIRDAILGVGSP--APILVSEGANTMDVGRAVLVQTEP------RCRLDAGT------- 385
A P L + N + G ++ +T RL G
Sbjct: 354 TPYPPA----NEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPL 409
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424
WG++G L + AA+A P+R V+ GD + E+
Sbjct: 410 WGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEI 448
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 103 bits (258), Expect = 1e-23
Identities = 105/451 (23%), Positives = 182/451 (40%), Gaps = 74/451 (16%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
+ L G ++G+ G + L + + V+++ +E+ A AAS +TGKP +
Sbjct: 10 RVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACM 69
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
SGPG +H L GL + ++ P++ ++G + G FQE V K F AV
Sbjct: 70 GTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQE---VNLTKLFDDVAVFN 126
Query: 142 KDITEVPKCVAQVLERAVS---GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
+ + P+ ++ RA+ + G +++LP D+L ++ E + +K T
Sbjct: 127 QILIN-PENAEYIIRRAIREAISKRGVAHINLPVDILRKS----------SEYKGSKNTE 175
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE-LKKLVESTGIPFLPTPMGKG 257
+ D +A L+KE++KP+++ G G R G+ + + E G P + T GKG
Sbjct: 176 VGKVKYSIDFSRAKELIKESEKPVLLIGGG---TRGLGKEINRFAEKIGAPIIYTLNGKG 232
Query: 258 LLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
+LPD P L T A+ + D+ +++G ++ +K K + VD
Sbjct: 233 ILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVNFL------NKSAKVIQVD 286
Query: 311 AIWKKTKDNVLKMEVQLAKDVVPF-----------------------------------N 335
I L +++ V F
Sbjct: 287 -IDNSNIGKRLDVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQENSLDK 345
Query: 336 FMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLG 394
M P R+ A I+ G TM R E A W G+MG+G+
Sbjct: 346 PMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSA--WLGSMGIGVP 403
Query: 395 YCIAAAIAC-PERLVVAVEGDSGFGFSAVEV 424
+ A+ A +R V++ GD GF + +E+
Sbjct: 404 GSVGASFAVENKRQVISFVGDGGFTMTMMEL 434
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 93.4 bits (232), Expect = 2e-20
Identities = 105/449 (23%), Positives = 176/449 (39%), Gaps = 70/449 (15%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
K L +G H++G+ G S + A + + +I +E+ AA+A LTGK G+
Sbjct: 7 KVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGV 66
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H L GL + + P++ + G FQE+++ + +
Sbjct: 67 CFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNR 126
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVT 199
A +P + + + RA + G + +P D Q I + + + +T
Sbjct: 127 TAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIP----DNDYYASSVSYQTPL 181
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
+ +AV LK A++P+I +G GA +A EL+ L E IP + T + KG++
Sbjct: 182 LPAPDVEAVTRAVQTLKAAERPVIYYGIGA--RKAGEELEALSEKLKIPLISTGLAKGII 239
Query: 260 PDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF------ 306
D +P A + A+ Q D+ L VG F E K K+ K+
Sbjct: 240 EDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYP----FAEVSKAFKNTKYFIQIDI 295
Query: 307 --------------VLVDA------------------IWKKTKDNVLKMEVQLAKDVVPF 334
VL DA W+ NV LA
Sbjct: 296 DPAKLGKRHHTDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLAS----L 351
Query: 335 NFMT--PMRI--IRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCR-LDAGTWGT 388
T P++ + AI + I + G ++ R ++ P+ + + + + T
Sbjct: 352 EDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNR--HLKMTPKNKWITSNLFAT 409
Query: 389 MGVGLGYCIAAAIACPERLVVAVEGDSGF 417
MGVG+ IAA + P+R V + GD F
Sbjct: 410 MGVGVPGAIAAKLNYPDRQVFNLAGDGAF 438
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 84.1 bits (209), Expect = 3e-19
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAV--QLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
++L +G ++G+ G + L + A+ + + FI +E++A +AASA LTGK G
Sbjct: 7 VETLENWGVKRVYGIPGDSINGLMD-ALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLG 65
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
+ L SGPG +H L GL + + P++ I+G + G FQE+D + K + +
Sbjct: 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYN 125
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 177
++P+ + + + A++ R G L LP DV
Sbjct: 126 ETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGDVQDA 163
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 79.3 bits (196), Expect = 8e-16
Identities = 94/432 (21%), Positives = 159/432 (36%), Gaps = 92/432 (21%)
Query: 67 ASAYGY--LTGKPGILLTVSGPGCVH---GLAGLSNGMINTW----PIVMISGSC---DQ 114
+ A+GY +TGKP ++ VH G A G+ N P+++ +G ++
Sbjct: 64 SMAHGYALVTGKPQAVM-------VHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEE 116
Query: 115 KDFG-RGDF----QE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168
+ G R QE DQ V+ + K+ + + ++ + VA+ ++ A+S G YL
Sbjct: 117 GELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYL 176
Query: 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKG 228
LP +VL + + +A + DI +A +L A++P+I+ +
Sbjct: 177 TLPREVLAEEVPEVKA------DAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRA 230
Query: 229 AAYARAEGELKKLVESTGIP---FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285
A L++L E IP + + P HPL + + D+ LVV
Sbjct: 231 GRTAEGFASLRRLAEELAIPVVEYAGEVVN---YPSDHPLHLGPDPRADLAEADLVLVVD 287
Query: 286 ARLNWLLHFGEP------------------PKWS----------KDVKFVLVDAIWKKTK 317
+ + W+ P P W ++ K
Sbjct: 288 SDVPWIPKKIRPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLA 347
Query: 318 DNVLKMEVQLAKDVVPFNFMTPMRI-----IRDAILGVGSPAPI----LVSEGANTMDVG 368
+ + + V +RI R I + PI L D
Sbjct: 348 SAE-RRRARRRRAAV-----RELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVAD-E 400
Query: 369 RAVLV---QTEPR-CRLD-AGTWGTMGV--GLGYCIAAAI----ACPERLVVAVEGDSGF 417
+V PR RL+ G++ G GLG+ + AA+ A P+RLV+A GD F
Sbjct: 401 YDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSF 460
Query: 418 GFSAVEVEVWLS 429
F E W++
Sbjct: 461 IFGVPEAAHWVA 472
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 78.1 bits (193), Expect = 2e-15
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 22/286 (7%)
Query: 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYG 71
++ L A L G FGV+ I + + + G +RF+ E A A A+
Sbjct: 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHA 61
Query: 72 YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQEL-DQV 128
++G G+ LT +G G + L + P++ I+G + D G E DQ+
Sbjct: 62 RVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQL 121
Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
++ SK A + + + + + A++ G +++P D+ I + + +
Sbjct: 122 TMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDDLAPV 181
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
A + + + + L A++PL+ G GA +A A E+K+LV+ G
Sbjct: 182 HVAVPEPDA--------AAVAELAERLAAARRPLLWLGGGARHAGA--EVKRLVD-LGFG 230
Query: 249 FLPTPMGKGLLPDTHPLA------ATAARSLAIGQCDVALVVGARL 288
+ + G+G++P+ HP + + A +L CD+ LVVG+RL
Sbjct: 231 VVTSTQGRGVVPEDHPASLGAFNNSAAVEAL-YKTCDLLLVVGSRL 275
Score = 35.4 bits (82), Expect = 0.060
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 387 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGF------SAVEVEVWLSCIIM 433
G +G GL I AA+A P R V + GD G +AV+ + ++M
Sbjct: 405 GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLM 457
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 77.4 bits (191), Expect = 3e-15
Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 45/260 (17%)
Query: 58 HNEQSAGYAASAYGYLTGKPGILLTVS--GPGCVHGLAGLSNGMINTWPIVMISGSCDQK 115
HNEQ +AA AY + I S GPG + + + +N P++++ G
Sbjct: 63 HNEQGMAHAAIAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDV--- 119
Query: 116 DFG-RGDFQELDQVE-----------AVKPFSKFAVKAKDITEVPKCVAQVLERA--VSG 161
F R L Q+E +P S++ D P+ + L RA V
Sbjct: 120 -FATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYF----DRITRPEQLMSALPRAMRVMT 174
Query: 162 RPGGC---YLDLPTDVLHQTISVSE---AEKLLKEAESAKETVTQGGIVNSDIDKAVSLL 215
P C L L DV + E +++ + + ++ A +L+
Sbjct: 175 DPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPDER--------ELADAAALI 226
Query: 216 KEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------AAT 268
K AKKPLIV G G Y+ A L+ E+ GIP + T GK L HPL T
Sbjct: 227 KSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGT 286
Query: 269 AARSLAIGQCDVALVVGARL 288
A + A + D+ + +G RL
Sbjct: 287 LAANRAAEEADLVIGIGTRL 306
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 64.5 bits (158), Expect = 4e-11
Identities = 68/255 (26%), Positives = 104/255 (40%), Gaps = 25/255 (9%)
Query: 45 NRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWP 104
RA F+ +E+ A + A A+ TG+ G+ L SGPG +H L GL + ++ P
Sbjct: 37 GRA-DDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVP 95
Query: 105 IVMISGSCDQKDFGRGDF-QELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVS-- 160
+V I G + G G + QE+D K F VP+ + +++RAV
Sbjct: 96 VVAIVGQQARAALG-GHYQQEVDLQSLFKDVAGAFVQMVT----VPEQLRHLVDRAVRTA 150
Query: 161 -GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV--NSDIDKAVSLLKE 217
+ LP DV Q + S T+ +V + D+ +A +L
Sbjct: 151 LAERTVTAVILPNDV--QELEYEPPPHAHGTVHSGV-GYTRPRVVPYDEDLRRAAEVLNA 207
Query: 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAA 270
+K I+ G GA A E+ + E G +GK LPD P L T
Sbjct: 208 GRKVAILVGAGALGATD--EVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKP 265
Query: 271 RSLAIGQCDVALVVG 285
+ +CD L+VG
Sbjct: 266 SYELMRECDTLLMVG 280
Score = 38.7 bits (91), Expect = 0.006
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 378 RCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
L +GT TMG + Y IAA A P+R V+A+ GD
Sbjct: 407 MASL-SGTLATMGPAVPYAIAAKFAHPDRPVIALVGD 442
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 60.3 bits (147), Expect = 6e-11
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 343 IRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA 402
+ A+ I+V++ N+ L R L + +G MG GL I AA+A
Sbjct: 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALA 61
Query: 403 CPERLVVAVEGDSGFGFSAVEVE 425
P+R VV + GD GF + E+
Sbjct: 62 APDRPVVCIAGDGGFMMTGQELA 84
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 56.1 bits (136), Expect = 2e-09
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 361 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 420
G + M R PR L +G GTMG GL I A +A P+R VVA+ GD GF +
Sbjct: 3 GCHQMWAARY-YRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMN 61
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 55.4 bits (134), Expect = 4e-09
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 339 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT-EPR-CRLDAGTWGTMGVGLGYC 396
P RI+ D +G +L+ GA+ + + R +T P C + G TMGV L
Sbjct: 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMAR--YYRTYAPNTCLISNG-LATMGVALPGA 57
Query: 397 IAAAIACPERLVVAVEGDSGFGFSAVEVE 425
I A + P+R VVAV GD GF ++ E+E
Sbjct: 58 IGAKLVYPDRKVVAVSGDGGFMMNSQELE 86
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 55.8 bits (135), Expect = 3e-08
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 12/211 (5%)
Query: 28 GATHMFGVVGI---PVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84
G ++G+VG P+ R G+ ++ +E++A +AA+A LTGK +
Sbjct: 17 GVKRIYGIVGDSLNPIVDAVRRTG--GIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSC 74
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GPG +H + GL + + P++ I+ G G FQE S +
Sbjct: 75 GPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSA 134
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
+ P+ + ++ AV G + LP D+ + A ++ + TV
Sbjct: 135 EQAPRVLHSAIQHAV-AGGGVSVVTLPGDIADEPAPEGFAPSVI---SPRRPTVVPD--- 187
Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+++ + EAKK + G G A AE
Sbjct: 188 PAEVRALADAINEAKKVTLFAGAGVRGAHAE 218
Score = 32.7 bits (75), Expect = 0.47
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 387 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFG 418
G+M L + I A +A P R V+++ GD G
Sbjct: 408 GSMANALPHAIGAQLADPGRQVISMSGDGGLS 439
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 54.1 bits (130), Expect = 7e-08
Identities = 66/284 (23%), Positives = 110/284 (38%), Gaps = 32/284 (11%)
Query: 24 LSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82
L+ G H+FGV G + + + ++ NE +A YAA Y G LLT
Sbjct: 11 LTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGA-AALLT 69
Query: 83 VSGPGCVHGLAGLSNGMINTWPIVMI----------SGSCDQKDFGRGDFQELDQVEAVK 132
G G + + G++ P++ I G G GDF+ ++ A
Sbjct: 70 TFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEV 129
Query: 133 PFSKFAVKAKDIT-EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEA 191
++ + ++ T E+ + + L RPG YL LP DV + ++ + +
Sbjct: 130 TVAQAVLTEQNATAEIDRVITTALRER---RPG--YLMLPVDVAAKAVTPPVNPLVTHKP 184
Query: 192 ESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251
A + + D A + L AK+ ++ A + L+K V+ +P
Sbjct: 185 AHADSAL------RAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHAT 238
Query: 252 TPMGKGLLPDTHP--------LAATAARSLAIGQCDVALVVGAR 287
MGKG+L + A+T A AI D + VG R
Sbjct: 239 LLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVR 282
Score = 32.2 bits (73), Expect = 0.57
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGD 414
WG++G L A ACP R V+ + GD
Sbjct: 403 WGSIGYTLPAAFGAQTACPNRRVILLIGD 431
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 50.6 bits (122), Expect = 2e-07
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+PR L +G GTMG GL I A +A P++ V+ ++GD F
Sbjct: 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 50.6 bits (121), Expect = 3e-07
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 335 NFMTPMRIIRDAILGVGSPAPILVS-EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGL 393
N M P +++R+ L P +VS + N V + L +PR + ++G G L
Sbjct: 2 NPMHPRQVLRE--LEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYAL 59
Query: 394 GYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424
I A A P+R VVA+ GD +G S +E+
Sbjct: 60 PAIIGAKAAAPDRPVVAIAGDGAWGMSMMEI 90
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 49.8 bits (120), Expect = 3e-07
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 24 LSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82
L G H+FGV G L + + G+R++ NE +AGYAA Y + G G L+T
Sbjct: 7 LKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKG-LGALVT 65
Query: 83 VSGPG---CVHGLAG-----LSNGMINTWPIVMISGSCDQKD----------FGRGDFQE 124
G G ++G+AG + P+V I G+ K G GDF
Sbjct: 66 TYGVGELSALNGIAGAYAEHV--------PVVHIVGAPSTKAQASGLLLHHTLGDGDFDV 117
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPT 172
++ + + A + D + + +VL A+ RP Y+++P
Sbjct: 118 --FLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPV--YIEIPR 162
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 47.3 bits (113), Expect = 2e-06
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85
G H+FG G ++SL A R +E A AA+ Y G P +++ SG
Sbjct: 11 GVRHVFGYPGDEISSLLDALREGD-KRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSG 68
Query: 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDIT 145
G ++ + GL++ P+V + G+ + FQ + + + + + +
Sbjct: 69 TGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPA 128
Query: 146 EVPKCVAQVLERAVSGRPGGCYLDLP 171
E+P + + A + G + LP
Sbjct: 129 ELPAGIDHAIRTAYAS-QGPVVVRLP 153
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 48.1 bits (115), Expect = 6e-06
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 16/243 (6%)
Query: 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGK 76
AK+L G ++GV G + L++ ++G + ++ +E+ A +AA A LTG+
Sbjct: 7 DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66
Query: 77 PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK 136
+ GPG +H + GL + N P++ I+ + G G FQE E + S
Sbjct: 67 LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSH 126
Query: 137 FAVKAKDITEVPKCVAQVLERAVS---GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193
+ + ++P +VL A+ G + LP DV + E+
Sbjct: 127 YCELVSNPEQLP----RVLAIAMRKAILNRGVAVVVLPGDVALKPAP----ERATPHWYH 178
Query: 194 AKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
A + V ++ K +LL + ++ G G A A EL L E+ P +
Sbjct: 179 APQPVVTPA--EEELRKLAALLNGSSNITLLCGSGCAGAHD--ELVALAETLKAPIVHAL 234
Query: 254 MGK 256
GK
Sbjct: 235 RGK 237
Score = 29.2 bits (66), Expect = 5.5
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 348 LGVGSPA--PI-------LVSEGAN-----TMDVGRAVL-----VQTEPRCRLDAGTW-- 386
L V S PI +SE A T DVG + ++ + RL G++
Sbjct: 349 LAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRL-LGSFNH 407
Query: 387 GTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
G+M + + A A P R VVA+ GD GF
Sbjct: 408 GSMANAMPQALGAQAAHPGRQVVALSGDGGF 438
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 45.6 bits (109), Expect = 1e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 384 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
G TMG GL IAA +A P+R V+A+ GD GF
Sbjct: 48 GLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGF 81
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 46.2 bits (110), Expect = 3e-05
Identities = 69/269 (25%), Positives = 109/269 (40%), Gaps = 46/269 (17%)
Query: 21 AKSLSLFGATHMFGVVG-IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
A+ L G T +F V G +T L + + G+ I NE +AGYAA Y G
Sbjct: 23 ARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGAC 82
Query: 80 LLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRG----------DF-QE 124
++T V GL+ L N + + P++ I G + D+G DF QE
Sbjct: 83 VVTF----TVGGLSVL-NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE 137
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS-----GRPG----GCYLDLPTDVL 175
L + V + +D E+ ++ A+S +P C L +
Sbjct: 138 LRCFQTVTCYQAVINNLEDAHEL-------IDTAISTALKESKPVYISVSCNL---AAIP 187
Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
H T S L S K ++ + ++ A L +A KP++V G A+A
Sbjct: 188 HPTFSREPVPFFLTPRLSNKMSL------EAAVEAAAEFLNKAVKPVLVGGPKLRVAKAC 241
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP 264
+L +++G P P KGL+P+ HP
Sbjct: 242 KAFVELADASGYPVAVMPSAKGLVPEHHP 270
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 45.7 bits (109), Expect = 4e-05
Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 22/230 (9%)
Query: 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD 126
A Y TG + S G + + L N P+V+ +G + F L
Sbjct: 64 ADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPF--LA 121
Query: 127 QVEAV---KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
V+A KP+ K++++ +VP +A+ A+ G ++ +P D Q
Sbjct: 122 AVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWDQ-----P 176
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
AE L A+ + + + + L A++P +V G A A + +L E
Sbjct: 177 AEPLP-----ARTVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAE 231
Query: 244 STGIPFLPTPM-GKGLLPDTHPL------AATAARSLAIGQCDVALVVGA 286
P PM G+ P+ HPL A+ S + D+ LV+GA
Sbjct: 232 RHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGA 281
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 44.5 bits (105), Expect = 9e-05
Identities = 34/109 (31%), Positives = 47/109 (43%)
Query: 66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL 125
AA YG + GKP + L GPG +GLA L N PIV I G +
Sbjct: 58 AADGYGRIAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTS 117
Query: 126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
D +P S++ ++ V VA+ ++ A S G L +P DV
Sbjct: 118 DIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166
Score = 36.0 bits (83), Expect = 0.034
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 385 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 416
T G++G GL AA+A P+R VV +GD G
Sbjct: 387 TGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGG 418
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 43.7 bits (103), Expect = 1e-04
Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 24/252 (9%)
Query: 28 GATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84
GA MFG+ G +P + L +E + G+AA A G G+
Sbjct: 14 GAQEMFGIPGDFALPFFKVIEETGIL--PLHTLSHEPAVGFAADAAARYRGTLGVAAVTY 71
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG-----DFQELD-QVEAVKPFSKFA 138
G G + + ++ P+V+ISG+ + G + LD Q + K +
Sbjct: 72 GAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQ 131
Query: 139 VKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKET 197
D P +A+VL A RP YL++P D+++ +E E + +
Sbjct: 132 AVLDDPATAPAEIARVLGSARELSRP--VYLEIPRDMVN-----AEVEPVPDDPAWP--- 181
Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
+++ D+ ++ ++ A P+++ E ++ +L + G+P + T MG+G
Sbjct: 182 -VDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRG 240
Query: 258 LLPDTH-PLAAT 268
LL D P T
Sbjct: 241 LLADAPTPPLGT 252
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 39.1 bits (92), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 387 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 420
G +G GL + AA+A P+R VVA+ GD F ++
Sbjct: 49 GGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYT 82
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 36.7 bits (86), Expect = 0.010
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 384 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 424
WG++G + + AA+A P+R V+ + GD F + E+
Sbjct: 47 PLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQEL 87
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 36.4 bits (85), Expect = 0.026
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 151 VAQVLERAVSGRPGGCYLDLP-TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSD-- 207
V + + +A PG ++++P + L+ + L S TV+ G V
Sbjct: 143 VDRAVAQAQGAPPGPVHINVPFREPLY---PDPLLQPLQPWLRSGVPTVSTGPPVLDPES 199
Query: 208 IDKAVSLLKEAKKPLIVFGK--GAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
+D L++AK+ LI+ G GA A A L L E+ G P L P+ GL HPL
Sbjct: 200 LDDLWDRLRQAKRGLIIAGPLAGAEDAEA---LAALAEALGWPLLADPLS-GLRGGPHPL 255
Query: 266 AATAARS-LAIGQCDVALVVGARLNWLLHFGEPP------KW--SKDVKFVLVD 310
LA + L + ++ FG PP +W + ++ +VD
Sbjct: 256 VIDHYDLLLANAELREELQP----DLVIRFGGPPVSKRLRQWLARQPAEYWVVD 305
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 34.8 bits (81), Expect = 0.083
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 385 TWGTMGVGLGYCIAAAIACPERLVVAVEGD 414
T G +G GL AA+ACP+R V+A++GD
Sbjct: 383 TGGAIGQGLPLATGAAVACPDRKVLALQGD 412
Score = 31.4 bits (72), Expect = 1.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSN------GMIN 101
AA Y + GKP L GPG +GLA L N ++N
Sbjct: 54 AADGYARMAGKPAATLLHLGPGLANGLANLHNARRARTPIVN 95
>gnl|CDD|176449 cd00281, DAP_dppA, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 265
Score = 34.1 bits (78), Expect = 0.11
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 51 GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
+ FI +H A+ Y T I + H L L+ G P+VM++G
Sbjct: 97 ALLFIGYHARAGTAANVMAHSYTTEVSQIRINGQAIAEFH-LNALTAGYYGV-PVVMVAG 154
Query: 111 SCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163
+ + +++ V K +F+VKA +V + + + E ++ P
Sbjct: 155 DAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGTEGSLQRLP 207
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 34.0 bits (79), Expect = 0.16
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 214 LLKEAKKPLIVFGKGAAYARAEGE-----LKKLVESTGI 247
+LK AK+P+I+ G+G A ARA+G KL E G
Sbjct: 433 VLKAAKRPMIIVGQG-ALARADGAAVLALAAKLAEKVGA 470
>gnl|CDD|217100 pfam02552, CO_dh, CO dehydrogenase beta subunit/acetyl-CoA synthase
epsilon subunit. This family consists of Carbon
monoxide dehydrogenase I/II beta subunit EC:1.2.99.2 and
acetyl-CoA synthase epsilon subunit. Carbon monoxide
beta subunit catalyzes the reaction: CO + H2O + acceptor
<=> CO2 + reduced acceptor.
Length = 168
Score = 32.9 bits (75), Expect = 0.17
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 211 AVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
A ++K+AK+PL++ G YA E K + + + T + L D P
Sbjct: 28 AAMMIKKAKRPLLIVGPQVLYAENEEAKVKKILEKDLKEVATALIIAGLYDYEP 81
>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E.
coli, rpiR negatively regulates the expression of rpiB
gene. Both rpiB and rpiA are ribose phosphate isomerases
that catalyze the reversible reactions of ribose
5-phosphate into ribulose 5-phosphate.
Length = 139
Score = 32.2 bits (74), Expect = 0.19
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
++KAV LL +A++ + +FG G++ AE L + G P + LL D H
Sbjct: 1 EALEKAVDLLAKARR-IYIFGVGSSGLVAE-YLAYKLLRLGKPVV-------LLSDPHLQ 51
Query: 266 AATAARSLAIGQCDVALVV 284
+AA + DV + +
Sbjct: 52 LMSAAN---LTPGDVVIAI 67
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 31.1 bits (71), Expect = 0.75
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 366 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
D+G L P +D T MG +G I A A ++ VVAV GDS F
Sbjct: 32 DIGCYTLGALPPLNAIDTCT--CMGASIGVAIGMAKASEDKKVVAVIGDSTF 81
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 31.1 bits (70), Expect = 0.83
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
+PR ++ G G +G + + A A P+R VVA+ GD F F E+ V
Sbjct: 46 KPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAV 96
>gnl|CDD|202597 pfam03332, PMM, Eukaryotic phosphomannomutase. This enzyme
EC:5.4.2.8 is involved in the synthesis of the
GDP-mannose and dolichol-phosphate-mannose required for
a number of critical mannosyl transfer reactions.
Length = 219
Score = 30.4 bits (69), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
NGMIN P I +C Q++ R +F+E D+ ++
Sbjct: 96 NGMINVSP---IGRNCSQEE--RNEFEEYDKKHKIRQ 127
>gnl|CDD|239093 cd02410, archeal_CPSF_KH, The archaeal cleavage and polyadenylation
specificity factor (CPSF) contains an N-terminal K
homology RNA-binding domain (KH). The archeal CPSFs are
predicted to be metal-dependent RNases belonging to the
beta-CASP family, a subgroup enzymes within the
metallo-beta-lactamase fold. The KH motif is a
beta-alpha-alpha-beta-beta unit that folds into an
alpha-beta structure with a three stranded beta-sheet
interupted by two contiguous helices. In general, KH
domains are known to bind single-stranded RNA or DNA and
are found in a wide variety of proteins including
ribosomal proteins, transcription factors and
post-transcriptional modifiers of mRNA.
Length = 145
Score = 29.6 bits (67), Expect = 1.6
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 175 LHQTISVSEAEKLLKEAESAKETVTQ-----GGIVNSDIDKAV-SLLKEAKKPLIVFGKG 228
L + I + +LK E A + + + GI + D ++ EA+KP +V GKG
Sbjct: 35 LRKRIVIRPDPSVLKPPEEAIKIILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKG 94
Query: 229 AAYAR 233
+ R
Sbjct: 95 GSTLR 99
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 1.6
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 180 SVSEAEKLLKEAESAKETVTQ---------GGIVN--SDIDKAVSLLKEAK 219
+ + EK L+E E AKE + + G + ++ KA+ LK+AK
Sbjct: 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
>gnl|CDD|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second
domain of the Nad11/75-kDa subunit of the NADH-quinone
oxidoreductase/respiratory complex I/NADH
dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G
subunit of alphaproteobacteria NDH-1. The NADH-quinone
oxidoreductase is the first energy-transducting complex
in the respiratory chains of many prokaryotes and
eukaryotes. Mitochondrial complex I and its bacterial
counterpart, NDH-1, function as a redox pump that uses
the redox energy to translocate H+ ions across the
membrane, resulting in a significant contribution to
energy production. The nad11 gene codes for the largest
(75 kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Paracoccus denitrificans, this subunit is
encoded by the nqo3 gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The Nad11/Nqo3 subunit is made of two domains: the first
contains three binding sites for FeS clusters (the fer2
domain), the second domain (this CD), is of unknown
function or, as postulated, has lost an ancestral
formate dehydrogenase activity that became redundant
during the evolution of the complex I enzyme. Although
only vestigial sequence evidence remains of a
molybdopterin binding site, this protein domain belongs
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 375
Score = 30.7 bits (70), Expect = 1.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 215 LKEAKKPLIVFGKGAAYARAEGE-----LKKLVESTGI 247
LK+AKKP+I+ G G A AR +G + KL + G+
Sbjct: 215 LKDAKKPMIIVGSG-ALARKDGAAILAAVAKLAKKNGV 251
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 30.4 bits (69), Expect = 1.8
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 230 AYARAEGELKKLVESTGIPFLP-TPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282
AE EL L GI L +P+ GLL + +R+ + + L
Sbjct: 183 LERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQREL 236
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 30.4 bits (70), Expect = 2.0
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 13/46 (28%)
Query: 178 TISVSEAEKLLKEAESAK------------ETVTQGGIVNSD-IDK 210
+ V EA K+L E E+AK E V Q GIV D IDK
Sbjct: 215 KLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDK 260
>gnl|CDD|129415 TIGR00315, cdhB, CO dehydrogenase/acetyl-CoA synthase complex,
epsilon subunit. Nomenclature follows the description
for Methanosarcina thermophila. The complex is also
found in Archaeoglobus fulgidus, not considered a
methanogen, but is otherwise generally associated with
methanogenesis [Energy metabolism, Chemoautotrophy].
Length = 162
Score = 29.5 bits (66), Expect = 2.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 214 LLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
++K AK+PL++ G + + K +E +P + T
Sbjct: 23 MIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 29.8 bits (67), Expect = 2.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 387 GTMGVGLGYCIAAAIACPERLVVAVEGD 414
G+MG+ + A+A P+R V+A+EGD
Sbjct: 57 GSMGLAFPIALGVALAQPKRRVIALEGD 84
>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain
the SIS (Sugar ISomerase) domain and have both the
phosphoglucose isomerase (PGI) and the phosphomannose
isomerase (PMI) functions. These functions catalyze the
reversible reactions of glucose 6-phosphate to fructose
6-phosphate, and mannose 6-phosphate to fructose
6-phosphate, respectively at an equal rate. This protein
contains two SIS domains. This alignment is based on the
first SIS domain.
Length = 119
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 211 AVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
AV KE ++ G G+L ++ G+P + P G
Sbjct: 62 AVEQAKERGAKIVAITSG-------GKLLEMAREHGVPVIIIPKG 99
>gnl|CDD|213987 cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase
domain of Histidinol phosphate phosphatase. HisPPase
catalyzes the eighth step of histidine biosynthesis, in
which L-histidinol phosphate undergoes
dephosphorylation to produce histidinol. HisPPase can
be classified into two types: the bifunctional HisPPase
found in proteobacteria that belongs to the DDDD
superfamily and the monofunctional Bacillus subtilis
type that is a member of the PHP family. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. The PHP
domain has four conserved sequence motifs and contains
an invariant histidine that is involved in metal ion
coordination. The PHP domain of HisPPase is
structurally homologous to other members of the PHP
family that have a distorted (beta/alpha)7 barrel fold
with a trinuclear metal site on the C-terminal side of
the barrel.
Length = 129
Score = 28.7 bits (65), Expect = 3.0
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 39 PVTSLANRAVQLGVRFIAF--HNEQSAGYAASAYGY---LTGKPGI 79
+ RA++LG+ IA HN A Y L PG+
Sbjct: 16 TPEEIVERAIELGLDGIAITDHNTIDGAEEALKEAYKDGLLVIPGV 61
>gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind the metal ion in the cleft between these
domains.
Length = 195
Score = 29.2 bits (66), Expect = 3.0
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 192 ESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251
+ ++ G N +++K V+L KP +V ++ A +LK GIP +
Sbjct: 37 KEVRKKPKVGSYSNPNVEKIVAL-----KPDLVIVSSSSLAELLEKLKDA----GIPVVV 87
Query: 252 TP 253
P
Sbjct: 88 LP 89
>gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit
B. Members of this largely archaeal protein family are
subunit B of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdB)
from molybdenum-containing (FmdB) forms of this enzyme.
Length = 421
Score = 29.6 bits (67), Expect = 3.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 208 IDKAVSLLKEAKKPLI 223
I+KA +LK AK+PLI
Sbjct: 66 IEKAAEILKNAKRPLI 81
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 29.7 bits (67), Expect = 3.7
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 213 SLLKEAKKPLIVFGKGAAYARA-EGELK----KLVESTGIPFLPTPMGKG---LLPDTHP 264
LL + + L+VFG+G YA A EG LK L+ S GI L M G L+ +T P
Sbjct: 529 ELLIDEQS-LLVFGRGYNYATALEGALKVKEVALMHSEGI--LAGEMKHGPLALVDETLP 585
Query: 265 LAATAAR 271
+ A R
Sbjct: 586 IIVIATR 592
>gnl|CDD|239162 cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the
molybdenum/tungsten formylmethanofuran dehydrogenases,
subunit B (FmdB/FwdB), and other related proteins.
Formylmethanofuran dehydrogenase catalyzes the first
step in methane formation from CO2 in methanogenic
archaea and some eubacteria. Members of this CD belong
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 415
Score = 29.6 bits (67), Expect = 3.8
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 34/138 (24%)
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE---- 235
++ LL+ A + V GI I + LK AK +I +G G +R
Sbjct: 199 LLAALRALLRGAGLVPDEVA--GIPAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNI 256
Query: 236 -------GELKKLVESTGIPF--------------------LPTPMGKGLLPDTHPLAAT 268
L + + +P +G P +P T
Sbjct: 257 EAAIRLVKALNEYTKFALLPLRGHYNVRGFNQVLTWLTGYPFRVDFSRGY-PRYNPGEFT 315
Query: 269 AARSLAIGQCDVALVVGA 286
A LA G+ D L++ +
Sbjct: 316 AVDLLAEGEADALLIIAS 333
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 28.9 bits (65), Expect = 3.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 182 SEAEKLLKEAESAKETVTQGG-----IVNSDIDKAVSLLKEA 218
+ EK+ K E+A++ IVN D+D+A LKE
Sbjct: 138 EQEEKINKRMEAAEQEFQHYALFDYIIVNDDLDEAYKKLKEI 179
>gnl|CDD|238127 cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate
5,10-methylenetetrahydrofolate which is then utilized by
thymidylate synthase. Inhibition of DHFR interrupts
thymidilate synthesis and DNA replication, inhibitors of
DHFR (such as Methotrexate) are used in cancer
chemotherapy. 5,6,7,8-tetrahydrofolate also is involved
in glycine, serine, and threonine metabolism and
aminoacyl-tRNA biosynthesis.
Length = 158
Score = 28.3 bits (64), Expect = 4.5
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL------VESTG 246
+G V +++A+ L + + + V G Y +A +L E G
Sbjct: 65 QLDYQDAEGVEVVHSLEEALELAENTVEEIFVIGGAEIYKQALPYADRLYLTRIHAEFEG 124
Query: 247 IPFLP 251
F P
Sbjct: 125 DTFFP 129
>gnl|CDD|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The
NuoG/Nad11/75-kDa subunit (second domain) of the
NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory
complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is
the first energy-transducting complex in the respiratory
chains of many prokaryotes and eukaryotes. Mitochondrial
complex I and its bacterial counterpart, NDH-1, function
as a redox pump that uses the redox energy to
translocate H+ ions across the membrane, resulting in a
significant contribution to energy production. The
atomic structure of complex I is not known and the
mechanisms of electron transfer and proton pumping are
not established. The nad11 gene codes for the largest
(75-kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Escherichia coli, this subunit is encoded
by the nuoG gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The nad11 gene is nuclear-encoded in animals, plants,
and fungi, but is still encoded in the mitochondrial
genome of some protists. The Nad11/NuoG subunit is made
of two domains: the first contains three binding sites
for FeS clusters (the fer2 domain), the second domain
(this CD), is of unknown function or, as postulated, has
lost an ancestral formate dehydrogenase activity that
became redundant during the evolution of the complex I
enzyme. Although only vestigial sequence evidence
remains of a molybdopterin binding site, this protein
domain family belongs to the molybdopterin_binding
(MopB) superfamily of proteins. Bacterial type II
NADH-quinone oxidoreductases and NQR-type sodium-motive
NADH-quinone oxidoreductases are not homologs of this
domain family.
Length = 386
Score = 29.2 bits (66), Expect = 4.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 215 LKEAKKPLIVFGKGAAYARAEGELKKLVE 243
LK+AKKPLI+ G A LK L
Sbjct: 225 LKKAKKPLIILGSSALRKDGAAILKALAN 253
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 28.8 bits (65), Expect = 5.7
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
EKLL +A E T + +++AV LL +A++ + FG G++ A +L +
Sbjct: 97 LEKLLAANIAALER-TLNLLDEEALERAVELLAKARR-IYFFGLGSSGLVAS-DLAYKLM 153
Query: 244 STGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284
G+ + L DTH A + DV + +
Sbjct: 154 RIGLNVV-------ALSDTHGQLMQLA---LLTPGDVVIAI 184
>gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is a member of the
iron-activated alcohol dehydrogenase-like family. They
are distinct from other alcohol dehydrogenases which
contains different protein domain. Proteins of this
family have not been characterized. Their specific
function is unknown. They are mainly found in bacteria.
Length = 374
Score = 28.7 bits (65), Expect = 7.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 58 HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMIN 101
+ E +A A L G GI L +G G VHGLAG G+ +
Sbjct: 224 NGEDAAARDDMALASLLG--GIALANAGLGAVHGLAGPIGGLFD 265
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 28.8 bits (65), Expect = 7.9
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 215 LKEAKKPLIVFGKGA-------AYARAEGELKKLVESTGIPFLPT---PMGKGLLPDTHP 264
L AKKPLI+ G A A A LK GI + MG LL
Sbjct: 434 LAGAKKPLIISGTSAGSPAIIEAAANVAKALKGRGADVGITLVAPEANSMGLALL-GGGS 492
Query: 265 LAATAARSLAIGQCDVALVVGARL 288
L L G+ D +V+ L
Sbjct: 493 LEEALEE-LESGRADAVIVLENDL 515
>gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS),
N-terminal catalytic TIM barrel domain.
2-isopropylmalate synthase (IPMS) catalyzes an
aldol-type condensation of acetyl-CoA and
2-oxoisovalerate yielding 2-isopropylmalate and CoA, the
first committed step in leucine biosynthesis. This
family includes the Arabidopsis thaliana IPMS1 and IPMS2
proteins, the Glycine max GmN56 protein, and the
Brassica insularis BatIMS protein. This family also
includes a group of archeal IPMS-like proteins
represented by the Methanocaldococcus jannaschii AksA
protein. AksA catalyzes the condensation of
alpha-ketoglutarate and acetyl-CoA to form
trans-homoaconitate, one of 13 steps in the conversion
of alpha-ketoglutarate and acetylCoA to
alpha-ketosuberate, a precursor to coenzyme B and
biotin. AksA also catalyzes the condensation of
alpha-ketoadipate or alpha-ketopimelate with acetylCoA
to form, respectively, the (R)-homocitrate homologs
(R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and
(R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This
family belongs to the DRE-TIM metallolyase superfamily.
DRE-TIM metallolyases include 2-isopropylmalate synthase
(IPMS), alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 268
Score = 28.2 bits (64), Expect = 9.1
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 204 VNSDIDKAVSLLKEAKKPLI-VF 225
V DID A LK AK I F
Sbjct: 71 VKKDIDAAAEALKPAKVDRIHTF 93
>gnl|CDD|99750 cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of
mainly bacterial proteins, with a few members found in
fungi, plants, and archaea. Escherichia coli YdcF has
been shown to bind S-adenosyl-L-methionine (AdoMet), but
a biochemical function has not been idenitified. The
family also includes Escherichia coli sanA and
Salmonella typhimurium sfiX, which are involved in
vancomycin resistance; sfiX may also be involved in
murein synthesis.
Length = 150
Score = 27.3 bits (61), Expect = 9.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 208 IDKAVSLLKEAKKPLIVF--GKGAAYARAEGEL-KKLVESTGIP 248
+D A L + P ++ G+G +E E + + G+P
Sbjct: 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP 66
>gnl|CDD|150532 pfam09872, DUF2099, Uncharacterized protein conserved in archaea
(DUF2099). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 257
Score = 28.0 bits (63), Expect = 9.4
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 50/187 (26%)
Query: 83 VSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ--ELDQVEAVKP-----FS 135
+ P V G+ G +G++ T PI + ++K D + ++DQ+E VK +
Sbjct: 105 TTNPELVQGIGGRMSGLVETTPIPEVIDKIEEKGGIVLDPETAKIDQIEGVKKAIELGYK 164
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT-ISVSEAEKLLKEAESA 194
+ AV D + K R + +D+ +H T IS EAE+L+K A+
Sbjct: 165 RIAVTVADAEDAKKI------RELEES----GVDILIFGVHTTGISREEAERLVKYAD-- 212
Query: 195 KETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE-STGIP-FLPT 252
IV + Y R K L++ + +P F T
Sbjct: 213 ----------------------------IVTACASKYIREIAGKKALLQVGSSVPIFALT 244
Query: 253 PMGKGLL 259
GK L+
Sbjct: 245 QAGKELI 251
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 28.2 bits (63), Expect = 9.9
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 265 LAATAARSLAIGQCDVALVVGA 286
L + A+ LA G CDVALVVGA
Sbjct: 92 LQSARAQILA-GLCDVALVVGA 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,145,731
Number of extensions: 2198210
Number of successful extensions: 2643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2525
Number of HSP's successfully gapped: 191
Length of query: 437
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 337
Effective length of database: 6,502,202
Effective search space: 2191242074
Effective search space used: 2191242074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)