RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013746
(437 letters)
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 340 bits (875), Expect = e-112
Identities = 180/468 (38%), Positives = 263/468 (56%), Gaps = 54/468 (11%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYA 66
+ DG + +L + M+GVVGIP+T+LA G RF +F +EQ AGYA
Sbjct: 3 NDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYA 62
Query: 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQE 124
AS GY+ GKPG+ LTVS PG ++G+ L++ N +P++++SGS +++ D +GD++E
Sbjct: 63 ASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEE 122
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
+DQ+ +P K + + I ++P +A+ + AVSGRPGG Y+DLP + QTISV EA
Sbjct: 123 MDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEA 182
Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES 244
KLL + I +A L+K AK+P+I+ GKGAAYA+ + E++ LVE
Sbjct: 183 NKLLFKPIDP---APAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEE 239
Query: 245 TGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK-- 302
TGIPFLP M KGLLPD HP +A A R+ A+ QCDV +++GARLNWL+ G+ W
Sbjct: 240 TGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDEL 299
Query: 303 -------------------------DVKFVL-----------------VDAIWKKTKDNV 320
D+K + A+ K N
Sbjct: 300 KKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNK 359
Query: 321 LKMEVQLAKDVV--PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPR 378
K+ ++ + N+ + ++RD +L +P LV+EGAN +D R ++ +PR
Sbjct: 360 AKLAGKMTAETPSGMMNYSNSLGVVRDFMLA--NPDISLVNEGANALDNTRMIVDMLKPR 417
Query: 379 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 426
RLD+GTWG MG+G+GYC+AAA A + V+AVEGDS FGFS +E+E
Sbjct: 418 KRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELET 464
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 318 bits (817), Expect = e-104
Identities = 184/464 (39%), Positives = 267/464 (57%), Gaps = 53/464 (11%)
Query: 8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAA 67
+ Q DG + ++L ++GVVGIPVT +A A G+R+I F +EQSAGYAA
Sbjct: 2 SDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAA 61
Query: 68 SAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQEL 125
+A G+LT KPGI LTVS PG ++GL L+N +N +P++MISGS D+ D +GD++EL
Sbjct: 62 AASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEEL 121
Query: 126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAE 185
DQ+ A KP++K A + ++ +A+ + +VSGRPGG YLDLP +VL T+ EA
Sbjct: 122 DQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEAL 181
Query: 186 KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
+ + E+ + + A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES
Sbjct: 182 TTIVKVENPSPALL---PCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESA 238
Query: 246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
IPFLP M KG+L DTHPL+A AARS A+ DV ++VGARLNWLL W+ D +
Sbjct: 239 QIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLA-HGKKGWAADTQ 297
Query: 306 FVLVD---------------------------------------AIWKKT-----KDNVL 321
F+ +D +W+ + N
Sbjct: 298 FIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQ 357
Query: 322 KMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRL 381
KM +L+ D P N+ + +RD + + LV+EGANT+D R ++ +PR RL
Sbjct: 358 KMHEKLSTDTQPLNYFNALSAVRDVL--RENQDIYLVNEGANTLDNARNIIDMYKPRRRL 415
Query: 382 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 425
D GTWG MG+G+GY I A++ VVA+EGDS FGFS +E+E
Sbjct: 416 DCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIE 458
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 186 bits (474), Expect = 2e-53
Identities = 75/458 (16%), Positives = 147/458 (32%), Gaps = 70/458 (15%)
Query: 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAG 64
+ + + ++L GA MFG+ G +P + +E + G
Sbjct: 16 PRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEE---TQILPLHTLSHEPAVG 72
Query: 65 YAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121
+AA A + G+ G G V+ +AG P+V+ISG+ + G
Sbjct: 73 FAADAAARYSSTLGVAAVTYGAGAFNMVNAVAG---AYAEKSPVVVISGAPGTTEGNAGL 129
Query: 122 --FQELD----QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175
+ Q + K + + D + P +A+VL A + YL++P +++
Sbjct: 130 LLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVL-GAARAQSRPVYLEIPRNMV 188
Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ + + A D+ ++ ++ A P+++ E
Sbjct: 189 NAEVEPVGDDPAWPVDRDALAAC---------ADEVLAAMRSATSPVLMVCVEVRRYGLE 239
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHPLAA--------TAARSLAIGQCDVALVVGAR 287
++ +L + G+P + T MG+GLL D A + + + D ++GA
Sbjct: 240 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAI 299
Query: 288 LN--------------WLLHFG-EPPKWSK----------DVKFVLVDAIWKKTKDNVLK 322
L+ +H V +L +
Sbjct: 300 LSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLPPSDRTTRGKE 359
Query: 323 MEVQLAKDVVPFNFMTPMRIIR--DAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRC 379
+ PM I R + + G ++ ++ G
Sbjct: 360 PHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLF--TAM---DMIDAG 414
Query: 380 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+ G + MG G+ I A + ++ V GD F
Sbjct: 415 LMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAF 452
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 182 bits (463), Expect = 1e-51
Identities = 79/454 (17%), Positives = 146/454 (32%), Gaps = 58/454 (12%)
Query: 11 NAQIDGNTLAAKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYA 66
+ +I+ K L +GA ++G+ + ++ + V+F+ +E+ A
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEE--ENNVKFLQVKHEEVGAMA 58
Query: 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD 126
A G G+ + GPG H + GL + ++ P+V I GS Q++ FQEL+
Sbjct: 59 AVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELN 118
Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
Q + + + ++PK V + A++ R G L++P D I +
Sbjct: 119 QNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYS 177
Query: 187 LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246
DID AV LL +K+P+I G G +++L
Sbjct: 178 SANSLRKYAPIAPAAQ----DIDAAVELLNNSKRPVIYAGIGTMGHGP--AVQELARKIK 231
Query: 247 IPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPK 299
P + T + I + D L G+ + G
Sbjct: 232 APVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTFRN 291
Query: 300 WSK-----------------------DVKFVLVD--AIWKKTKD----NVLKMEVQLAKD 330
D + + ++ + ++
Sbjct: 292 VDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWRE 351
Query: 331 VVPFNF------MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDA 383
+ + ++ AI I + G +T R L T +
Sbjct: 352 YINMLETKEEGDLQFYQVYN-AINNHADEDAIYSIDVGNSTQTSIR-HLHMTPKNMWRTS 409
Query: 384 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+ TMG+ + + A P+R V + GD F
Sbjct: 410 PLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAF 443
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 176 bits (448), Expect = 9e-50
Identities = 87/455 (19%), Positives = 153/455 (33%), Gaps = 88/455 (19%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
K+L G ++GV G ++ NR + +++ +E+ A +AA A L+G+
Sbjct: 11 KTLESAGVKRIWGVTGDSLNGLSDSLNR--MGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
+ GPG +H + GL + N P++ I+ + G G FQE E + S +
Sbjct: 69 VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
++P+ +A + +AV R G + LP DV + + V
Sbjct: 129 ELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHAPQP----V 183
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
++ K LL+ + ++ G G A A EL + P + GK
Sbjct: 184 VTPE--EEELRKLAQLLRYSSNIALMCGSGCAGAHK--ELVEFAGKIKAPIVHALRGKEH 239
Query: 259 LPDTHPLAA-------TAARSLAIGQCDVALVVGARLNWLLHFGE----------PPKWS 301
+ +P ++ + D +++G + + + P
Sbjct: 240 VEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIG 299
Query: 302 K----------DVKFVL---------------VDAIWKKTKDNVLKMEVQLAKDVVPFNF 336
D+K L +D + +D ++ +
Sbjct: 300 AHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIH- 358
Query: 337 MTPMRIIR--------DAILGVGSPAPILVSEGANTMDVGRAV------LVQTEPRCRLD 382
P + + DAI T DVG L R L
Sbjct: 359 --PQYLAQQISHFAADDAIF---------------TCDVGTPTVWAARYLKMNGKRRLLG 401
Query: 383 AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+ G+M + + A PER VVA+ GD GF
Sbjct: 402 SFNHGSMANAMPQALGAQATEPERQVVAMCGDGGF 436
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 175 bits (447), Expect = 3e-49
Identities = 97/462 (20%), Positives = 174/462 (37%), Gaps = 66/462 (14%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSA 63
+ ++ I K L +G H++G+ G + A A + + +I +E+
Sbjct: 4 KQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEVG 62
Query: 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
AA+A LTGK G+ +GPG H + GL + + P++ + G FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
E+++ + + V A + +P + + + RA + + G + +P D+ Q I +
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAED 181
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
+ + + + L A++PLI +G GA A E L++L +
Sbjct: 182 WYA--SANSYQTPLLPEPD--VQAVTRLTQTLLAAERPLIYYGIGARKAGKE--LEQLSK 235
Query: 244 STGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA----RLNWLL 292
+ IP + T KG++ D +P A + A+ Q DV L VG
Sbjct: 236 TLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAE---- 291
Query: 293 HFGE--------------PPKWSK----------DVKFVLVD--AIWKKTKD----NVLK 322
+ P K K D + L A + +
Sbjct: 292 -VSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANL 350
Query: 323 MEVQLAKDVVPFNF------MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQT 375
V+ + + + +++R A+ + P I + G ++ R L T
Sbjct: 351 ANVKNWRAYLASLEDKQEGPLQAYQVLR-AVNKIAEPDAIYSIDVGDINLNANR-HLKLT 408
Query: 376 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+ + + TMGVG+ IAA + PER V + GD G
Sbjct: 409 PSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGA 450
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 170 bits (432), Expect = 2e-47
Identities = 99/461 (21%), Positives = 174/461 (37%), Gaps = 64/461 (13%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYA 66
Q G L L G +FG+ G + + + + +R I +E +A +
Sbjct: 4 QYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFM 63
Query: 67 ASAYGYLTGKPGILLTVSGPGC---VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
A+A G +TGK G+ L SGPGC + G+A P+V + G+ + D + Q
Sbjct: 64 AAAVGRITGKAGVALVTSGPGCSNLITGMA---TANSEGDPVVALGGAVKRADKAKQVHQ 120
Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
+D V P +K+A++ + + V+ A GRPG ++ LP DV+ +S
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKV 180
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
G + ID+ L+ +AK P+ + G A+ L++L+E
Sbjct: 181 LPA--------SGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLE 232
Query: 244 STGIPFLPTPMGKGLLPDTH-PLAA-------TAARSLAIGQCDVALVVGARL------N 289
++ IP T G + + A A + D+ + +G
Sbjct: 233 TSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAM 292
Query: 290 W------LLHFG-EPPKWSK----------DVKFVLVDAI---------------WKKTK 317
W L+H P + D+ L + +
Sbjct: 293 WNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDR 352
Query: 318 DNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTE 376
+ + + + + P+RI+R + + + L + G+ + + R +
Sbjct: 353 QH-QRELLDRRGAQLNQFALHPLRIVRA-MQDIVNSDVTLTVDMGSFHIWIARYLYT-FR 409
Query: 377 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
R + + TMGV L + I A + PER VV+V GD GF
Sbjct: 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGF 450
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 166 bits (423), Expect = 3e-46
Identities = 87/452 (19%), Positives = 151/452 (33%), Gaps = 80/452 (17%)
Query: 21 AKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
L+ GA H+FGV G + + + + ++ NE +A YAA Y G
Sbjct: 12 LDRLTDCGADHLFGVPGDYNLQFLDHVIDSP---DICWVGCANELNASYAADGYARCKGF 68
Query: 77 PGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQKD-------FG 118
LLT G G ++G+AG + P++ I G + Q+ G
Sbjct: 69 -AALLTTFGVGELSAMNGIAGSYAEHV--------PVLHIVGAPGTAAQQRGELLHHTLG 119
Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
G+F+ +P + + + + RPG YL LP DV +
Sbjct: 120 DGEFRH--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKA 175
Query: 179 ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
+ K+A + + D A + L +K+ ++ + L
Sbjct: 176 ATPPVNALTHKQAHADSACLKA------FRDAAENKLAMSKRTALLADFLVLRHGLKHAL 229
Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVGARLN- 289
+K V+ + MGKG+ + A+T A AI D L VG R
Sbjct: 230 QKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTD 289
Query: 290 -------------WLLHFG-EPPKWSK----DVKFV-LVDAIWKKTKDNVLKMEVQLAKD 330
+ + + ++ + + K +V + +
Sbjct: 290 TLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGLMSSSSG 349
Query: 331 VVPFNF----MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGT 385
+PF +T R + P I++++ G + G L +
Sbjct: 350 AIPFPQPDGSLTQENFWR-TLQTFIRPGDIILADQGTSAF--GAIDLRLPADVNFIVQPL 406
Query: 386 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
WG++G L A ACP R V+ + GD
Sbjct: 407 WGSIGYTLAAAFGAQTACPNRRVIVLTGDGAA 438
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 165 bits (421), Expect = 2e-45
Identities = 107/478 (22%), Positives = 171/478 (35%), Gaps = 92/478 (19%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQS 62
+ A++ A L G T FGV G P +++ G+R I + +
Sbjct: 20 HMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRK---HGGIRHILARHVEG 76
Query: 63 AGYAASAYGYLT-GKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDFG 118
A + A Y T G G+ L SGP + L + ++ PI+ I+G +
Sbjct: 77 ASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALY---SASADSIPILCITGQAPRARLH 133
Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
+ DFQ +D KP SK AV ++ VP+ + Q SGRPG +DLP DV
Sbjct: 134 KEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAE 193
Query: 179 ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
I K ++ I+KAV +L +A++P+IV G G A A L
Sbjct: 194 IEFDPDMYE--PLPVYKPAASRM-----QIEKAVEMLIQAERPVIVAGGGVINADAAALL 246
Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPLAA-------TAARS-LAIGQCDVALVVGARL-- 288
++ E T +P +PT MG G +PD H L A + D+ +G R
Sbjct: 247 QQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFAN 306
Query: 289 ---NWLLHFG----------EPPKWSK----------DVKFVLVD--AIWKKTKDNVLKM 323
+ + EP + + D K L + ++ +
Sbjct: 307 RHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLP 366
Query: 324 -------EVQLAKDVVPFNF------MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRA 370
+ Q K + + P R+ + V+ +G
Sbjct: 367 CRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYE-EMNKAFGRDVCYVT------TIG-- 417
Query: 371 VLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+ R ++ G G +G + + A P+R VVA+ GD F
Sbjct: 418 ---LSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDF 472
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 162 bits (413), Expect = 1e-44
Identities = 79/456 (17%), Positives = 148/456 (32%), Gaps = 91/456 (19%)
Query: 21 AKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
L G +FGV G I +++I NE +A Y A Y
Sbjct: 32 LDRLHELGIEEIFGVPGDYNLQFLDQIISRE--------DMKWIGNANELNASYMADGYA 83
Query: 72 YLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
T K LT G G ++GLAG L P+V I GS K G F
Sbjct: 84 R-TKKAAAFLTTFGVGELSAINGLAGSYAENL--------PVVEIVGSPTSKVQNDGKFV 134
Query: 124 ELD--------QVEAVKPFSKFAVKAKDIT---EVPKCVAQVLERAVSGRPGGCYLDLPT 172
++ +P + E+ + ++Q+L+ +P Y++LP
Sbjct: 135 HHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKE---RKPV--YINLPV 189
Query: 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232
DV + + + + K LK A+KP+++ G
Sbjct: 190 DVAAAKAEKPALSLEKESSTTNTTEQVI-------LSKIEESLKNAQKPVVIAGHEVISF 242
Query: 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVV 284
E + + V T +P GK + ++ P + + + D L++
Sbjct: 243 GLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILML 302
Query: 285 GARL------NW--------LLHFG-EPPKWSK------DVKFVLVDAI-WKKTKDNVLK 322
G +L + ++ + D + V+ K +
Sbjct: 303 GVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNKVVEDFDFRAVVSSLSELKGIEYEGQY 362
Query: 323 MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRL 381
++ Q + + ++ R+ + A+ + +V+E G + G + + +
Sbjct: 363 IDKQYEEFIPSSAPLSQDRLWQ-AVESLTQSNETIVAEQGTSFF--GASTIFLKSNSRFI 419
Query: 382 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
WG++G + + IA E + GD
Sbjct: 420 GQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSL 455
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 162 bits (412), Expect = 2e-44
Identities = 80/458 (17%), Positives = 135/458 (29%), Gaps = 89/458 (19%)
Query: 21 AKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
A+ L G H F V G + + L ++ I NE + G++A Y G
Sbjct: 10 AERLVQIGLKHHFAVAGDYNLVLLDQLLLNK---DMKQIYCCNELNCGFSAEGYARSNGA 66
Query: 77 PGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQK-------DFG 118
+ G ++ L G L P+++ISG S DQ G
Sbjct: 67 -AAAVVTFSVGAISAMNALGGAYAENL--------PVILISGAPNSNDQGTGHILHHTIG 117
Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
+ D+ Q+E + + A D P + V+ A+ R YLD+ ++ +
Sbjct: 118 KTDYS--YQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA-YLDIACNIASEP 174
Query: 179 ISVSEAEKL-LKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237
L E E ++ +D V+LL+++ P+++ G A A
Sbjct: 175 CVRPGPVSSLLSEPEIDHTSLKA------AVDATVALLEKSASPVMLLGSKLRAANALAA 228
Query: 238 LKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVGARLN 289
+ L + KG P+ H + + D L +
Sbjct: 229 TETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAP--- 285
Query: 290 WLLHF-----GEPPKWSKDVKFVLVDA----IWKKTKDNVLKMEV--QLAKDVVPFNFMT 338
F W K +L + + + D LA+
Sbjct: 286 ---VFNDYSTVGWSAWPKGPNVILAEPDRVTVDGRAYDGFTLRAFLQALAEKAPARPASA 342
Query: 339 PMRIIRDAILGVGSPAPIL----VSEGANTMDVGRAVLVQTE---------------PRC 379
+ L S L + N + LV E
Sbjct: 343 QKSSVPTCSLTATSDEAGLTNDEIVRHINALLTSNTTLV-AETGDSWFNAMRMTLPRGAR 401
Query: 380 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
WG +G + A+ +R V + GD F
Sbjct: 402 VELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSF 439
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 161 bits (410), Expect = 3e-44
Identities = 87/474 (18%), Positives = 151/474 (31%), Gaps = 96/474 (20%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQS 62
++I + L +FG+ G I G+R+ NE +
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVE--------GMRWAGNANELN 53
Query: 63 AGYAASAYGYLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---S 111
A YAA Y + G ++T G G ++G+AG + ++ + G
Sbjct: 54 AAYAADGYARIKGM-SCIITTFGVGELSALNGIAGSYAEHV--------GVLHVVGVPSI 104
Query: 112 CDQKD-------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR-P 163
Q G GDF S+ DI P + + + + P
Sbjct: 105 SAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRP 162
Query: 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLI 223
YL LP +++ + LL+ ID + L K+AK P+I
Sbjct: 163 V--YLGLPANLVDLNVPAK----LLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVI 216
Query: 224 VFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAI 275
+ + + E KKL++ T P TPMGKG + + HP + A+
Sbjct: 217 LADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAV 276
Query: 276 GQCDVALVVGARLN--------------WLLHFG-EPPKWSK----DVKFV-LVDAIWKK 315
D+ L VGA L+ ++ F + K V+ ++ +
Sbjct: 277 ESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTT 336
Query: 316 TKDNVLKMEVQLAKDVVPFNF-------MTPMRIIRDAILGVGSPAPILVSE-GANTMDV 367
D + P N + + + ++++E G +
Sbjct: 337 IADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWN-QLGNFLQEGDVVIAETGTSAF-- 393
Query: 368 GRAVLVQTEPRCRLDAGTWGTMGVGL----GYCIAAAIACPERLVVAVEGDSGF 417
G + WG++G G AA P++ V+ GD
Sbjct: 394 GINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSL 447
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 160 bits (408), Expect = 3e-44
Identities = 78/396 (19%), Positives = 135/396 (34%), Gaps = 49/396 (12%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
E A Y + KP + S G + + LSN + P+++ +G + G
Sbjct: 47 EACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV 106
Query: 120 GDF-QELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176
+D +P K + EVP +++ + A G YL +P D
Sbjct: 107 EALLTNVDAANLPRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWD 164
Query: 177 QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236
+ + S+ + + D+D V L A P IV G A A
Sbjct: 165 KDADPQSHHLFDRHVSSSVR------LNDQDLDILVKALNSASNPAIVLGPDVDAANANA 218
Query: 237 ELKKLVESTGIPFLPTP-MGKGLLPDTHPL------AATAARSLAIGQCDVALVVGARLN 289
+ L E P P + P HP A AA S + DV LV+GA +
Sbjct: 219 DCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVF 278
Query: 290 ---------------WLLHFG-EPPKWSK---------DVKFVLVD--AIWKKTKDNVLK 322
L+ +P + ++ D+ + + +++ +
Sbjct: 279 RYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPT 338
Query: 323 MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRL 381
+ AK + P + D + + I ++E + T + + + ++ P
Sbjct: 339 AAPEPAKVDQDAGRLHPETVF-DTLNDMAPENAIYLNESTSTTAQMWQRLNMR-NPGSYY 396
Query: 382 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
G +G L I +A PER V+AV GD
Sbjct: 397 FCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSA 431
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 146 bits (372), Expect = 5e-39
Identities = 75/300 (25%), Positives = 120/300 (40%), Gaps = 20/300 (6%)
Query: 4 SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
S + + + + L G +FGVVG S+ V+ G+ F+ +E +A
Sbjct: 2 SRVSTAPSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-GIDFVLTRHEFTA 60
Query: 64 GYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDF-GR 119
G AA +TG+P GPG G+A +++ P++ ++ + D
Sbjct: 61 GVAADVLARITGRPQACWATLGPGMTNLSTGIA---TSVLDRSPVIALAAQSESHDIFPN 117
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
Q LD V V P SK+AV+ + E+ V + A++ G ++ LP D+L +
Sbjct: 118 DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSE 177
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
+ AK D+A +LL EAK P++V G A + A ++
Sbjct: 178 GIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIR 237
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLAA------------TAARSLAIGQCDVALVVGAR 287
L E IP + T + KG+LP H L A D+ L VG
Sbjct: 238 ALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYD 297
Score = 49.9 bits (120), Expect = 9e-07
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+P L + + G G+ I A +A P++ + GD GF
Sbjct: 424 DQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGF 466
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 146 bits (370), Expect = 1e-38
Identities = 49/304 (16%), Positives = 97/304 (31%), Gaps = 60/304 (19%)
Query: 21 AKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
A+ L G H F V G + + + + NE + G++A Y
Sbjct: 10 AERLVQIGLKHHFAVAGDYNLVLLDNLLLNK--------NMEQVYCCNELNCGFSAEGYA 61
Query: 72 YLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQKD---- 116
G + G + G L P+++ISG + D
Sbjct: 62 RAKGA-AAAVVTYSVGALSAFDAIGGAYAENL--------PVILISGAPNNNDHAAGHVL 112
Query: 117 ---FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173
G+ D+ Q+E K + A E P + V++ A+ + YL++ +
Sbjct: 113 HHALGKTDYH--YQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV-YLEIACN 169
Query: 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+ + L E++ E +N+ +++ + + K ++ G A
Sbjct: 170 IASMPCAAPGPASALFNDEASDEAS-----LNAAVEETLKFIANRDKVAVLVGSKLRAAG 224
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVG 285
AE K ++ G K P+ +P + + + D + +
Sbjct: 225 AEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALA 284
Query: 286 ARLN 289
N
Sbjct: 285 PVFN 288
Score = 47.5 bits (114), Expect = 6e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 384 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
WG +G + A+ PER + + GD F
Sbjct: 410 MQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSF 443
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 141 bits (359), Expect = 4e-37
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 18/238 (7%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
E + + Y Y+ + + G + A + P V I + D + GR
Sbjct: 52 ELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGR 111
Query: 120 GD-FQELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176
+ Q++ P ++ V+ + +V + + + A G Y+D+P D+
Sbjct: 112 SEAAQQVPWQS-FTPIARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTA 168
Query: 177 QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236
I A AK + N D+ +A + L AK P+I+ G G A +
Sbjct: 169 DQIDDKALVPR--GATRAKSVLH---APNEDVREAAAQLVAAKNPVILAGGGVARSGGSE 223
Query: 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-------TAARSLAIGQCDVALVVGAR 287
L KL E G+P + T G G+ P+TH LA + + + D LV+G+R
Sbjct: 224 ALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSR 281
Score = 49.8 bits (120), Expect = 1e-06
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
PR + + G +G G + A +A P V GD
Sbjct: 412 QRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGAL 454
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 138 bits (349), Expect = 8e-36
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKD 116
E +AG+AA Y K G+ L +G G V +A N ++ P++ ++GS +D
Sbjct: 50 EAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIA---NAWLDRTPVLFLTGSGALRD 106
Query: 117 FGRGDFQE-LDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173
Q +DQV P +K V +P+ V Q + A+S G LDLP D
Sbjct: 107 DETNTLQAGIDQVAMAAPITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164
Query: 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+L I + + + +D+D+A++LL++A++P+IV G A+
Sbjct: 165 ILMNQIDEDSVIIP--DLVLSAHG-ARPD--PADLDQALALLRKAERPVIVLGSEASRTA 219
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA------TAARSLAIGQCDVALVVGAR 287
+ L V +TG+P G +L + + A D+ L++GAR
Sbjct: 220 RKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGAR 279
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPE--RLVVAVEGDSGF 417
+P L G G+MGVG G + A +A E R + V GD
Sbjct: 407 VKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSV 451
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 135 bits (342), Expect = 7e-35
Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 22/240 (9%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKD 116
EQ +AA Y +GKPGI + SGPG V GLA + ++++ P+V I+G ++
Sbjct: 59 EQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLA---DALLDSVPLVAITGQVPRRM 115
Query: 117 FGRGDFQELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
G FQE VE + +K + V D+ ++P+ + + A SGRPG +D+P D+
Sbjct: 116 IGTDAFQETPIVEVTRSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173
Query: 175 LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234
Q + + + + +S +++ V L+ E+KKP++ G G +
Sbjct: 174 QQQLAIPNWEQAM--RLPGYMSRM-PKPPEDSHLEQIVRLISESKKPVLYVGGGCL--NS 228
Query: 235 EGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGAR 287
EL + VE TGIP T MG G P L+ T + A+ D+ L G R
Sbjct: 229 SDELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVR 288
Score = 50.2 bits (121), Expect = 9e-07
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
+PR L +G G MG GL I A++A P+ +VV ++GD F
Sbjct: 414 KKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSF 456
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 133 bits (336), Expect = 8e-34
Identities = 76/249 (30%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMI 108
F+ +EQ AG+ A Y +GKPG++L SGPG V +A + + P+V+
Sbjct: 121 FNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMA---DAFADGIPMVVF 177
Query: 109 SGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168
+G G FQE D V + +K+ V K + E+P + + E A SGRPG +
Sbjct: 178 TGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLV 237
Query: 169 DLPTDVLHQTISVS--EAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226
DLP DV + L A + + Q V I+KA L+ AKKP++ G
Sbjct: 238 DLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVG 297
Query: 227 KGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQC 278
G +A LK+L + IP T G G P + A +LA+
Sbjct: 298 AGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNA 357
Query: 279 DVALVVGAR 287
D+ + VGAR
Sbjct: 358 DLIIAVGAR 366
Score = 49.6 bits (119), Expect = 1e-06
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 375 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 417
P + +G GTMG GL I A +A PE LV+ ++GD+ F
Sbjct: 501 RNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASF 543
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 109 bits (273), Expect = 7e-26
Identities = 74/470 (15%), Positives = 149/470 (31%), Gaps = 66/470 (14%)
Query: 6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQS 62
L N + D + L G G P+ + L + +E+S
Sbjct: 3 LTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPIL--KIYVDVDERS 60
Query: 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF 122
AG+ A + +P +LL SG + ++ ++ P+++++ + G
Sbjct: 61 AGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAP 120
Query: 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAV----SGRPGGCYLDLPTDV- 174
Q +DQ+ K ++ E+ + RAV G +L+ P
Sbjct: 121 QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREP 180
Query: 175 LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234
L + S K+ T + +S I K V+ KK + V G
Sbjct: 181 LVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECT-GKKGVFVVG-PIDKKEL 238
Query: 235 EGELKKLVESTGIPFLPTPM-GKGLLPDTHPLAATAARSL-------AIGQCDVALVVGA 286
E + L + G P L P+ G + + +V + G+
Sbjct: 239 EQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGS 298
Query: 287 R------LNWLLHFGEPPKWSKD-------------------VKFV---LVDAIWKKTKD 318
NWL + + D +F+ + + KD
Sbjct: 299 MPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKD 358
Query: 319 ----NVLKMEVQLAKDVVPFNF-----MTPMRIIRDAILGVGSPAPILVSEGANTMDVGR 369
N ++A+++V + +I+ + + A + + DV
Sbjct: 359 AAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDT 418
Query: 370 AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAI--ACPERLVVAVEGDSGF 417
Q + + ++ A G G+ +++A+ + + + + GD F
Sbjct: 419 -YFSQIDKKIKMLANR-GAN--GIDGVVSSALGASVVFQPMFLLIGDLSF 464
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 103 bits (258), Expect = 6e-24
Identities = 64/467 (13%), Positives = 132/467 (28%), Gaps = 60/467 (12%)
Query: 6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQS 62
L+ + N +L G T G P+ L + +E+S
Sbjct: 23 LEMTVNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDI--SVHVQIDERS 80
Query: 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF 122
AG+ A +P +L+ SG + + + PI++++ + G
Sbjct: 81 AGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAP 140
Query: 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAV----SGRPGGCYLDLPTDVL 175
Q ++Q F KF ++ ++ + + + RA G ++++P
Sbjct: 141 QAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREP 200
Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
E ++ + + +L EA+K +IV G+ + A E
Sbjct: 201 LMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKE 260
Query: 236 GELKKLVESTGIPFLPTPMGKG--------LLPDTHPLAATAARSLAIGQCDVALVVGAR 287
+ L ++ P L P+ + D + + DV + G
Sbjct: 261 -NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPM 319
Query: 288 ------LNWLLHFGEPPKWSKDVKFVLVDAIWKKT-------KDNVLKMEVQLAKDVVPF 334
WL + D D ++ L
Sbjct: 320 PVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSS 379
Query: 335 NFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG---------- 384
++ + + I + + ++ R + L G
Sbjct: 380 EWLEKWQFVNGRFREH--LQTISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDT 437
Query: 385 ----------TWGTMGV-GLGYCIAAAIAC---PERLVVAVEGDSGF 417
+ G G+ +++A+ + V V GD F
Sbjct: 438 FFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSF 484
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 85.6 bits (212), Expect = 4e-18
Identities = 44/453 (9%), Positives = 125/453 (27%), Gaps = 57/453 (12%)
Query: 8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIP---VTSLANRAVQLG-VRFIAFHNEQSA 63
N + A + ++L+ G H + P T L A + +E+
Sbjct: 7 NRRWAAV-----ILEALTRHGVRH---ICIAPGSRSTLLTLAAAENSAFIHHTHFDERGL 58
Query: 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
G+ A ++ +P ++ SG + L + +++++ + G Q
Sbjct: 59 GHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQ 118
Query: 124 ELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAVSGRPGGCYLDLP-TDVLHQTI 179
+ Q ++ + V+ + + GG +++ P + L+ +
Sbjct: 119 AIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEM 178
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
+ + + ++ + ++ V G A ++
Sbjct: 179 DDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVA 238
Query: 240 KLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARL--------- 288
++ G P + + LP A + + Q + + +G+ L
Sbjct: 239 LWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQ 298
Query: 289 -----NWLLHFGEPPKW-----SKDVKFV-----LVDAIWKKTKDNVLKMEVQLAKDVV- 332
+ + + + ++ + + +LA+ +
Sbjct: 299 ASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQ 358
Query: 333 ----PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 388
+ ++ + + V + + +
Sbjct: 359 AVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPV------YSN 412
Query: 389 MGV-GLGYCIAAAI---ACPERLVVAVEGDSGF 417
G G+ ++ A + +A+ GD
Sbjct: 413 RGASGIDGLLSTAAGVQRASGKPTLAIVGDLSA 445
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 2e-09
Identities = 78/465 (16%), Positives = 134/465 (28%), Gaps = 157/465 (33%)
Query: 17 NTLAAKSLSLFGATHMFGVV--GIPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
+ + + L+L +H G + + V T+ A QL +F E + G+AA
Sbjct: 2 DAYSTRPLTL---SH--GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----- 51
Query: 74 TGKPGILLTVSGPGCVHGLAG--LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV 131
P L G L +S + G F ++ + +
Sbjct: 52 ----------DEPTTPAELVGKFLG----------YVSSLVEPSK--VGQFDQVLNL-CL 88
Query: 132 KPF-SKFAVKAKDI--------TEVPKCVAQVLE--------RAVSGRPGGCYLDLPTDV 174
F + + ++ DI E + + E R ++ RP
Sbjct: 89 TEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP----------- 136
Query: 175 LHQTISVSEAEKLLKEAESAKETVT-----QGGIVNSDIDKAVSLLKEAK------KPLI 223
L + + QG N+D +E + L+
Sbjct: 137 ----FDKKSNSALFRAVGEGNAQLVAIFGGQG---NTD-----DYFEELRDLYQTYHVLV 184
Query: 224 VFGKGAAYARAEGELKKLVEST---------GIPF---LPTPMGKGLLPDTHPLAATAAR 271
G + L +L+ +T G+ L P PD L +
Sbjct: 185 ----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP---SNTPDKDYLL-SIPI 236
Query: 272 SL-AIG--QCDVALVVGARLNWLLHFGEPPKW-------SKDVKFVLVDAI-----WKKT 316
S IG Q +V L + GE + S+ + V AI W+
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGF--TPGELRSYLKGATGHSQGL--VTAVAIAETDSWESF 292
Query: 317 KDNVLKM---------EVQLAKDVVPFNFMTPMRIIRDAI-LGVGSPAPILVSEGANTMD 366
+V K A P + P I+ D++ G P+P+L
Sbjct: 293 FVSVRKAITVLFFIGVRCYEA---YPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 367 VGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC-PERLVVA 410
V V + L AG + ++ + LVV+
Sbjct: 349 VQDYV---NKTNSHLPAGKQ----------VEISLVNGAKNLVVS 380
Score = 41.2 bits (96), Expect = 7e-04
Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 96/253 (37%)
Query: 29 ATHMFGVVGIPVTSL------ANRAVQLGVR-FIAFHNEQSAGYAASAYGYLTGKPGILL 81
+ M + + + N + G + I+ N A
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNL----------- 377
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
VSGP L GL+ + +K LDQ PFS+
Sbjct: 378 VVSGP--PQSLYGLNLTL--------------RKAKAPSG---LDQSRI--PFSE----- 411
Query: 142 KDITEVPKCVAQVLERAVSGRPGGC-----YLDLPTDVLHQTISVSEAEKLLKEAESAKE 196
K + L P L +D++++ + + A+ +
Sbjct: 412 ----RKLKFSNRFL-------PVASPFHSHLLVPASDLINKDL---VKNNVSFNAKDIQI 457
Query: 197 TV--TQGGIVNSDIDKAVSLLKE------AKKPL-------------IVFGKGAAYARAE 235
V T G SD+ + E + P+ + FG G A
Sbjct: 458 PVYDTFDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG--ASGL 512
Query: 236 GEL-KKLVESTGI 247
G L + + TG+
Sbjct: 513 GVLTHRNKDGTGV 525
Score = 38.9 bits (90), Expect = 0.003
Identities = 49/317 (15%), Positives = 84/317 (26%), Gaps = 138/317 (43%)
Query: 61 QSAGYAASA--YGYLTGKPGILLTVSGPGCVHGLAGLSNGMI--------NTWP------ 104
Q A Y +A G+ PG L + + G G S G++ ++W
Sbjct: 245 QLAHYVVTAKLLGF---TPGELRS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 105 -----IVMISGSCDQKDFGRGDFQELDQVEAVK-----PFSKFAVKAKDITEVPKCVAQV 154
++ G + + ++++ P ++ +V V +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 155 LERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAV-- 212
LP + + +S +VN V
Sbjct: 357 NSH------------LPAG---KQVEIS--------------------LVNGA-KNLVVS 380
Query: 213 ----SL------LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP------TPMGK 256
SL L++AK P G +R +KL S FLP +
Sbjct: 381 GPPQSLYGLNLTLRKAKAP-----SGLDQSRIPFSERKLKFSNR--FLPVASPFHSH--- 430
Query: 257 GLLPDTHPLAAT---------AARSLAI-------GQCD------------VALVVGARL 288
LL L A+ + I G D V ++ +
Sbjct: 431 -LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-DLRVLSGSISERIVDCIIRLPV 488
Query: 289 NW----------LLHFG 295
W +L FG
Sbjct: 489 KWETTTQFKATHILDFG 505
Score = 36.2 bits (83), Expect = 0.024
Identities = 36/255 (14%), Positives = 64/255 (25%), Gaps = 109/255 (42%)
Query: 5 ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAG 64
L +Q Q L + F L ++ + A H S G
Sbjct: 1725 LLSATQFTQP---ALTLMEKAAFED-------------LKSKGLIPADATFAGH---SLG 1765
Query: 65 -YAA-SAYG---------YLTGKPGILLTVSGPGCVHGLAGLSN-GMINTWPIVMISGSC 112
YAA ++ + G+ + V+ P G SN GMI P + +
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPR---DELGRSNYGMIAINPGRVAASFS 1822
Query: 113 DQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA---VSGRPGGCYLD 169
+ ++ V + V K ++E V
Sbjct: 1823 Q------------EALQYV------------VERVGKRTGWLVEIVNYNVEN-------- 1850
Query: 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA 229
Q + G + +D ++L K I
Sbjct: 1851 -------QQYVAA------------------GDLR--ALDTVTNVLNFIKLQKI------ 1877
Query: 230 AYARAEGELKKLVES 244
++ +L +S
Sbjct: 1878 -------DIIELQKS 1885
Score = 33.5 bits (76), Expect = 0.17
Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 84/178 (47%)
Query: 23 SLSLF-GATHMFGVVGIPVTSLAN-----------------------RAVQLGVRF--IA 56
+SL GA ++ VV P SL R ++ RF +A
Sbjct: 367 EISLVNGAKNL--VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 57 --FH---------------NEQSAGYAASA-----YGYLTGK----------PGI--LLT 82
FH + + + A Y G I +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 83 VS------------------GPGCVHGLAGLSNGMIN-TWPIVMISGSCDQK---DFG 118
GPG GL L++ + T V+++G+ D D+G
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 46.3 bits (109), Expect = 3e-06
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268
+ A ++ +AK+PL++ G A + K+ ++ IP T +L D A
Sbjct: 25 EMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKY 84
Query: 269 AARSLAI--------------GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
+ G D+ + +G + ++ K ++K + ++
Sbjct: 85 INAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIE 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 44/369 (11%), Positives = 101/369 (27%), Gaps = 135/369 (36%)
Query: 115 KDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVL--------------ERAV 159
+F D ++ D +++ SK + I V+ L ++ V
Sbjct: 31 DNF---DCKDVQDMPKSI--LSKEEID--HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 160 SGRPGGCYLDLPTDVLHQTIS-------------VSEAEKLLKEAES-AKETVTQGGIVN 205
L + L I + + ++L + + AK V++
Sbjct: 84 EE-----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
+ +A+ L+ AK +++ G G GK +
Sbjct: 139 K-LRQALLELRPAKN-VLIDGVL-----------------GS-------GKTWV------ 166
Query: 266 AATAARS-------------LAIGQCDVALVVGARLNWLLH-----FGEPPKWSKDVKFV 307
A S L + C+ V L LL+ + S ++K
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 308 LVDAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDV 367
+ + + L ++ ++ + V + + N ++
Sbjct: 227 IHSI---QAELRRLLKSKPYENCLL---------VLLN----VQNA------KAWNAFNL 264
Query: 368 GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV- 426
+L+ T R + ++ ++++ + EV+
Sbjct: 265 SCKILLTT--R---FKQ------------VTDFLSAATTTHISLD-HHSMTLTPDEVKSL 306
Query: 427 ---WLSCII 432
+L C
Sbjct: 307 LLKYLDCRP 315
Score = 41.8 bits (97), Expect = 4e-04
Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 71/220 (32%)
Query: 125 LDQVEAVKPFSKFAVKAKD-ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
L V+ K ++ F + K +T K V L A + LD + L E
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTP----DE 302
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKK--PLIVFGKGAAY----ARAEG- 236
+ LL K ++ L +E P + + A +
Sbjct: 303 VKSLL-----LK-------YLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 237 ------ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNW 290
+L ++ES+ + L + + L++ +
Sbjct: 348 KHVNCDKLTTIIESS-LNVLEPAEYRKMF-----------DRLSVFPPSAHI-------- 387
Query: 291 LLHFGEPPKWSKDVKFVLVDAIW-KKTKDNVLKMEVQLAK 329
P +L IW K +V+ + +L K
Sbjct: 388 ------PTI-------LLS-LIWFDVIKSDVMVVVNKLHK 413
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold
reverse binding of N oxidoreductase; HET: NAP; 2.00A
{Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Length = 207
Score = 40.9 bits (96), Expect = 3e-04
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
K G ++D A+ +++EA +I G G A+A+ + LV+
Sbjct: 17 STAGGKPMEISGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVK------ 70
Query: 250 LPTPMGKGLLPDTHPLAATAARSLAI----------------------GQCDVALVVGA 286
+ T GK + HP+A L + D+ LV+GA
Sbjct: 71 MLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGA 129
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase
subunits, oxidoreductas; HET: NAD NAP; 2.30A
{Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A*
1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Length = 203
Score = 40.1 bits (94), Expect = 5e-04
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 28/118 (23%)
Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
+A + + A ++K A K +IV G G A A+A+ L+++ + +
Sbjct: 19 VAAAGGAAGDRSVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMAD------V 72
Query: 251 PTPMGKGLLPDTHPLAATAARSLAI----------------------GQCDVALVVGA 286
G + HP+A + + DVA V+GA
Sbjct: 73 LKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGA 130
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H)
complex, inverted binding of NADP(H), oxidoreductase;
HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Length = 184
Score = 35.6 bits (82), Expect = 0.016
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
G ++D A+ +++EA +I G G A+A+ + LV+ + + GK +
Sbjct: 4 SGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVK------MLSEQGKKVR 57
Query: 260 PDTHPLAATAARSLAIGQCDVAL 282
HP+A GQ +V L
Sbjct: 58 FGIHPVAGRMP-----GQLNVLL 75
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic
transhydrogenase, inner membrane, membrane,
oxidoreductase, transmembrane; HET: NAD NAP; NMR
{Escherichia coli}
Length = 186
Score = 35.2 bits (81), Expect = 0.021
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
S++E G ++ LLK + +I G G A A+A+ + ++ E
Sbjct: 4 HHHHSSQE---VGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITE----- 55
Query: 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282
G + HP+A G +V L
Sbjct: 56 -KLRARGINVRFGIHPVAGRLP-----GHMNVLL 83
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold,
oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum}
SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C*
2oo5_C*
Length = 180
Score = 34.8 bits (80), Expect = 0.024
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
+G + + A ++K A K +IV G G A A+A+ L+++ + + G +
Sbjct: 5 EGRHMAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMAD------VLKKEGVEVS 58
Query: 260 PDTHPLAATAARSLAIGQCDVAL 282
HP+A G +V L
Sbjct: 59 YAIHPVAGRMP-----GHMNVLL 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.069
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA 270
LKKL +++ L K D+ P A A
Sbjct: 21 ALKKL-QAS----L-----KLYADDSAPALAIKA 44
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.16
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPF 134
G G+ + V+ V + S+ P++ I + D + + L V A +PF
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFL--VIAYEPF 171
Query: 135 SKFAVK--AKDITEVPKCVAQVLERAVSGRPGGC 166
A++ +I V C
Sbjct: 172 ENIAIELPPNEILFSENNDMDNNNDGVDELNKKC 205
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural
genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Length = 174
Score = 30.9 bits (69), Expect = 0.50
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 211 AVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP------MGKGLLPDTHP 264
+++K+AK+PL++ G E +KK VE I + T + GL +
Sbjct: 28 VANMIKKAKRPLLIVGPDMTDEMFE-RVKKFVE-KDITVVATGSAITRFIDAGLGEKVNY 85
Query: 265 LAATAARSL----------AIGQCDVALVVGAR 287
G D+ L++G+
Sbjct: 86 AVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSI 118
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A*
2mnr_A 1mns_A
Length = 359
Score = 29.5 bits (67), Expect = 2.4
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 337 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 396
M+ + I V P V T+ VL+ AG VG Y
Sbjct: 1 MSEVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLI----DLATSAGV-----VGHSYL 51
Query: 397 IAAAIACPERLVVAVE 412
A + L ++
Sbjct: 52 FAYTPVALKSLKQLLD 67
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 29.2 bits (65), Expect = 3.0
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 6/127 (4%)
Query: 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQSAGYAASAYGY 72
G L+ +LF T + + IP N RA++ G R I +HN A A Y
Sbjct: 39 SGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHNRIHATDVLHAVWY 98
Query: 73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
LT +P L GC G S+G IN I K D +
Sbjct: 99 LTTRPVPGLQQIHNGCGTGNETDSDGRINHGRI----AYISSKSCSNPDESYGCLSSNIP 154
Query: 133 PFSKFAV 139
A+
Sbjct: 155 ALELMAL 161
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 28.3 bits (64), Expect = 5.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 208 IDKAVSLLKEAKKPLIVFGKGAAYA 232
+++ S L + PLI+FG GA++
Sbjct: 233 MNRIFSELAKENVPLIMFGVGASHL 257
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 26.9 bits (60), Expect = 9.6
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 186 KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKG 228
++ + + +D + + +AKK + +FG G
Sbjct: 8 DIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKK-IFIFGVG 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,693,427
Number of extensions: 425433
Number of successful extensions: 1287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1201
Number of HSP's successfully gapped: 75
Length of query: 437
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 341
Effective length of database: 4,021,377
Effective search space: 1371289557
Effective search space used: 1371289557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)