BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013747
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 169/356 (47%), Gaps = 55/356 (15%)
Query: 109 VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITKALKRGVRVIELDLWPNSAKD-D 167
++ DMT PL+HYFI + HN+YL QFS S + L G R +ELD W D +
Sbjct: 310 LHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEE 369
Query: 168 VLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTFEDHLN-PHLQAKVAQMITQTFG 226
++ HG T+TT + + + AI E+AF SPYP+IL+FE+H++ P QAK+A+ FG
Sbjct: 370 PIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFG 429
Query: 227 AMLYSPESECLKEF--------PSPEELKYRIIISTKPPKERREKKGINNRKDISAKGKI 278
ML +E L++F PSPE+L+ +I+I K N ++ K
Sbjct: 430 DMLL---TEPLEKFPLKPGVPLPSPEDLRGKILIKNKK----------NQFSGPTSSSKD 476
Query: 279 STEDVLGKEPPDLTANQAD----------------DERSDYDTSEHNQCDEDNTEACDRV 322
+ + G PP A A +E + D E + D A V
Sbjct: 477 TGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEV 536
Query: 323 TRASGTLAYKRLIAIHNG-KLKGCLKEELNLQLEKVRRI-SLSEQK----FEKAAVSYGT 376
T AY+ + ++ N + + E + Q + I S +E K KA+V +
Sbjct: 537 T------AYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQF-- 588
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQVFQYTLLQYDCVL 432
V + ++ + RIYPK TR++SSNY P + W G QMVALN Q + Q V
Sbjct: 589 --VDYNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVF 642
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 173/400 (43%), Gaps = 35/400 (8%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVSIEDAEQIVDQVLQRWH--HIARFT 83
A++ F++ A ++ E+L FL H E + +++R+ A+
Sbjct: 78 AEIDRAFEEAAGSAETLSVERLVTFL----QHQQREEEAGPALALSLIERYEPSETAK-A 132
Query: 84 RRSLTVEDFHHYLFSTDLNP-PLGNQ-VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSD 141
+R +T + F YL S D N L ++ VYQDM PLSHY + + HN+YL+ +Q + S
Sbjct: 133 QRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSST 192
Query: 142 VPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPV 201
+AL +G R +ELD W + + ++ HG T T+ + LRAI++ AF ASPYPV
Sbjct: 193 EAYIRALCKGCRCLELDCW-DGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 251
Query: 202 ILTFEDHLNPHLQAKVAQMITQTFGAMLYS-PESECLKEFPSPEELKYRIIISTKPPKER 260
IL+ E+H + Q +A+ + G +L P PSPE+LK +I++ K
Sbjct: 252 ILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGL 311
Query: 261 REKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEACD 320
G N G E D++ E D Q + +
Sbjct: 312 LPAGGEN-----------------GSEATDVSDEVEAAEMEDEAVRSQVQ-HKPKEDKLK 353
Query: 321 RVTRASGTLAYKRLIAIHNGKLKGCLKEELNLQLEKVRRISLSEQKFEKAAVSYGTDVVR 380
V S + Y + + G + S SE + + G VR
Sbjct: 354 LVPELSDMIIYCKSVHFGGFSSPGTSGQAF------YEMASFSESRALRLLQESGNGFVR 407
Query: 381 FTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQV 420
+ RIYP R +SSNY P+ W G Q+VALN Q
Sbjct: 408 HNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQT 447
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 173/400 (43%), Gaps = 35/400 (8%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVSIEDAEQIVDQVLQRWH--HIARFT 83
A++ F++ A ++ E+L FL H E + +++R+ A+
Sbjct: 80 AEIDRAFEEAAGSAETLSVERLVTFL----QHQQREEEAGPALALSLIERYEPSETAK-A 134
Query: 84 RRSLTVEDFHHYLFSTDLNP-PLGNQ-VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSD 141
+R +T + F YL S D N L ++ VYQDM PLSHY + + HN+YL+ +Q + S
Sbjct: 135 QRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSST 194
Query: 142 VPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPV 201
+AL +G R +ELD W + + ++ HG T T+ + LRAI++ AF ASPYPV
Sbjct: 195 EAYIRALCKGCRCLELDCW-DGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 253
Query: 202 ILTFEDHLNPHLQAKVAQMITQTFGAMLYS-PESECLKEFPSPEELKYRIIISTKPPKER 260
IL+ E+H + Q +A+ + G +L P PSPE+LK +I++ K
Sbjct: 254 ILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGL 313
Query: 261 REKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEACD 320
G N G E D++ E D Q + +
Sbjct: 314 LPAGGEN-----------------GSEATDVSDEVEAAEMEDEAVRSQVQ-HKPKEDKLK 355
Query: 321 RVTRASGTLAYKRLIAIHNGKLKGCLKEELNLQLEKVRRISLSEQKFEKAAVSYGTDVVR 380
V S + Y + + G + S SE + + G VR
Sbjct: 356 LVPELSDMIIYCKSVHFGGFSSPGTSGQAF------YEMASFSESRALRLLQESGNGFVR 409
Query: 381 FTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQV 420
+ RIYP R +SSNY P+ W G Q+VALN Q
Sbjct: 410 HNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQT 449
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 34/300 (11%)
Query: 36 AEGGTHMTAEQLWQFLVEVQGHGGVS------IEDAEQIVDQVLQRWHHIARFTRRS-LT 88
A+G ++T EQL F+ + Q ++ + ++ + +++++ +F R ++
Sbjct: 234 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL--LIEKYEPNQQFLERDQMS 291
Query: 89 VEDFHHYLFSTD--LNPPLGNQVYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITK 146
+E F YL + + P + DMT PLS YFI + HN+YL Q + S +
Sbjct: 292 MEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQ 351
Query: 147 ALKRGVRVIELDLWPN-SAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTF 205
AL G R +ELD+W +++ + HG T+TT V L L AI E AF SPYPVIL+F
Sbjct: 352 ALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSF 411
Query: 206 EDHLN-PHLQAKVAQMITQTFG-AMLYSPESECL----KEFPSPEELKYRIIISTKPPKE 259
E+H++ QAK+A+ FG A+L P + PSP++L RI++ K
Sbjct: 412 ENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK---- 467
Query: 260 RREKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEAC 319
R SA G D G++ P +N A E S Q ++++C
Sbjct: 468 --------KRHRPSAGGP----DSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSC 515
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQVFQYTL 425
+ V + ++ + RIYPK TRV+SSNY P + W G Q+VALN Q +
Sbjct: 634 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAM 682
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 34/300 (11%)
Query: 36 AEGGTHMTAEQLWQFLVEVQGHGGVS------IEDAEQIVDQVLQRWHHIARFTRRS-LT 88
A+G ++T EQL F+ + Q ++ + ++ + +++++ +F R ++
Sbjct: 236 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL--LIEKYEPNQQFLERDQMS 293
Query: 89 VEDFHHYLFSTD--LNPPLGNQVYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITK 146
+E F YL + + P + DMT PLS YFI + HN+YL Q + S +
Sbjct: 294 MEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQ 353
Query: 147 ALKRGVRVIELDLWPN-SAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTF 205
AL G R +ELD+W +++ + HG T+TT V L L AI E AF SPYPVIL+F
Sbjct: 354 ALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSF 413
Query: 206 EDHLN-PHLQAKVAQMITQTFG-AMLYSPESECL----KEFPSPEELKYRIIISTKPPKE 259
E+H++ QAK+A+ FG A+L P + PSP++L RI++ K
Sbjct: 414 ENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK---- 469
Query: 260 RREKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEAC 319
R SA G D G++ P +N A E S Q ++++C
Sbjct: 470 --------KRHRPSAGGP----DSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSC 517
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQVFQYTL 425
+ V + ++ + RIYPK TRV+SSNY P + W G Q+VALN Q +
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAM 684
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQVFQYTLLQYDCVLLLV 435
D V + +K I RIYPK TRV+SSNY P I W G Q+VALN Q F + CV L V
Sbjct: 559 DFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAM----CVNLGV 613
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 377 DVVRFTQKNILRIYPKQTRVNSSNYKPMIGWIHGAQMVALNMQVFQYTLLQYDCVLLLV 435
D V + +K + RIYPK TRV+SSNY P I W G Q+VALN Q F + CV L V
Sbjct: 559 DFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDVAM----CVNLGV 613
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 6 LCGLPACFTRKHKVAEA----GPPADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVS 61
L G P C + +++ + GP D F K + TH+T +QF H +
Sbjct: 142 LGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQFFELDVYHSDGT 201
Query: 62 IEDAEQIVDQVLQRWH 77
A+QI Q+ + W+
Sbjct: 202 PLTADQIFVQLEKIWN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,228,750
Number of Sequences: 62578
Number of extensions: 550921
Number of successful extensions: 1314
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 19
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)