Your job contains 1 sequence.
>013748
MVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKA
MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTL
KWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQ
ECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVED
VRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLAW
FLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGS
TETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTKKDV
YGQVWPRHFQLYAFQDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013748
(437 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150931 - symbol:TDP1 "tyrosyl-DNA phosphodies... 1553 2.0e-159 1
UNIPROTKB|Q9NUW8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 643 4.7e-68 2
UNIPROTKB|E2REL5 - symbol:TDP1 "Uncharacterized protein" ... 641 4.7e-68 2
MGI|MGI:1920036 - symbol:Tdp1 "tyrosyl-DNA phosphodiester... 622 9.8e-66 2
UNIPROTKB|F1NSQ5 - symbol:TDP1 "Uncharacterized protein" ... 613 9.8e-66 2
RGD|1309618 - symbol:Tdp1 "tyrosyl-DNA phosphodiesterase ... 616 3.3e-65 2
UNIPROTKB|F1MST1 - symbol:TDP1 "Uncharacterized protein" ... 619 5.4e-65 2
UNIPROTKB|F1SDA7 - symbol:LOC100625067 "Uncharacterized p... 615 5.4e-65 2
ZFIN|ZDB-GENE-090909-1 - symbol:tdp1 "tyrosyl-DNA phospho... 596 5.4e-65 2
UNIPROTKB|G3V2F4 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 647 2.0e-63 1
UNIPROTKB|E7EPD8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 644 4.2e-63 1
UNIPROTKB|Q86TV8 - symbol:TDP1 "Full-length cDNA clone CS... 556 6.9e-59 2
WB|WBGene00018678 - symbol:F52C12.1 species:6239 "Caenorh... 389 6.6e-41 2
FB|FBgn0260817 - symbol:gkt "glaikit" species:7227 "Droso... 425 6.8e-40 1
UNIPROTKB|H0YJ44 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 421 1.8e-39 1
UNIPROTKB|G4N013 - symbol:MGG_06176 "Uncharacterized prot... 230 2.3e-31 3
ASPGD|ASPL0000004965 - symbol:AN5903 species:162425 "Emer... 206 1.1e-25 3
POMBASE|SPCP31B10.05 - symbol:tdp1 "tyrosyl-DNA phosphodi... 232 4.1e-25 3
UNIPROTKB|G3V2J6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 221 8.3e-18 1
UNIPROTKB|Q9BRS7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 204 1.4e-14 1
UNIPROTKB|H0YJL7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 159 5.7e-11 1
DICTYBASE|DDB_G0273869 - symbol:DDB_G0273869 "Tyrosyl-DNA... 103 2.3e-07 3
DICTYBASE|DDB_G0273125 - symbol:DDB_G0273125 "Tyrosyl-DNA... 103 2.3e-07 3
UNIPROTKB|G3V2U6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 133 3.8e-06 1
>TAIR|locus:2150931 [details] [associations]
symbol:TDP1 "tyrosyl-DNA phosphodiesterase 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA]
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CP002688 GO:GO:0006281
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 HSSP:Q9NUW8 EMBL:AY150498 EMBL:FJ858738
IPI:IPI00525009 RefSeq:NP_197021.2 UniGene:At.27105
ProteinModelPortal:Q8H1D9 IntAct:Q8H1D9 PaxDb:Q8H1D9 PRIDE:Q8H1D9
EnsemblPlants:AT5G15170.1 GeneID:831369 KEGG:ath:AT5G15170
TAIR:At5g15170 InParanoid:Q8H1D9 OMA:CRAMPHI PhylomeDB:Q8H1D9
ProtClustDB:CLSN2690163 Genevestigator:Q8H1D9 Uniprot:Q8H1D9
Length = 605
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 291/431 (67%), Positives = 330/431 (76%)
Query: 1 MVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKA 60
MVDIDWL+ ACP LA IP V+VIHGE DG E+++R KPANWILHKP LPISFGTHHSKA
Sbjct: 180 MVDIDWLMSACPKLANIPQVMVIHGEGDGRQEYIQRKKPANWILHKPRLPISFGTHHSKA 239
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQN-NLSEECGFENDLIDYLST 119
+ L+YPRGVR++VHTANLIHVDWNNKSQGLWMQDFP KD + + + CGFE DLIDYL+
Sbjct: 240 IFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPWKDDDKDPPKGCGFEGDLIDYLNV 299
Query: 120 LKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVL 179
LKWPEF+ANLP G A VRLIASVPGYHTG +L KWGHMKLRT+L
Sbjct: 300 LKWPEFTANLPGRGNVKINAAFFKKFDYSDATVRLIASVPGYHTGFNLNKWGHMKLRTIL 359
Query: 180 QECTFEKGFKKSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVE 239
QEC F++ F++SPL+YQFSSLGSLDEKW+AE EDKTPLG G+ LI+WPTVE
Sbjct: 360 QECIFDREFRRSPLIYQFSSLGSLDEKWLAEFGNSLSSGITEDKTPLGPGDSLIIWPTVE 419
Query: 240 DVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLA 299
DVRCSLEGYAAGNAIPSP KNV+K FLKKYWA+WKA H+ R RAMPHIKTF RYN QK+A
Sbjct: 420 DVRCSLEGYAAGNAIPSPLKNVEKPFLKKYWARWKADHSARGRAMPHIKTFTRYNDQKIA 479
Query: 300 WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA-KRHGCGFSCT-SNIVPSEIK 357
WFLLTS+NLSKAAWGALQKNNSQLMIRSYELGVL LPS K GC FSCT SN PS +K
Sbjct: 480 WFLLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPSPIKTQGCVFSCTESN--PSVMK 537
Query: 358 SGSTETSQIQK-TKLVTLTWHGSSDAGASSXXXXXXXXXXXXXQRYSSEDVPWSWDKRYT 416
+ +++K +KLVT+TW G D + YS EDVPWSWD+ Y+
Sbjct: 538 AKQETKDEVEKRSKLVTMTWQGDRDL---PEIISLPVPYQLPPKPYSPEDVPWSWDRGYS 594
Query: 417 KKDVYGQVWPR 427
KKDVYGQVWPR
Sbjct: 595 KKDVYGQVWPR 605
>UNIPROTKB|Q9NUW8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000012 "single strand break repair"
evidence=IDA;IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] Reactome:REACT_216 InterPro:IPR010347 Pfam:PF06087
UniProt:Q9NUW8 GO:GO:0005634 GO:GO:0005737 GO:GO:0008219
GO:GO:0003690 GO:GO:0003697 GO:GO:0004527 GO:GO:0006302
GO:GO:0090305 GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR EMBL:AK001952 EMBL:DQ367843
EMBL:AL137128 EMBL:BC015474 EMBL:AF182002 EMBL:AF182003
IPI:IPI00655885 RefSeq:NP_001008744.1 RefSeq:NP_060789.2
UniGene:Hs.209945 PDB:1JY1 PDB:1MU7 PDB:1MU9 PDB:1NOP PDB:1QZQ
PDB:1RFF PDB:1RFI PDB:1RG1 PDB:1RG2 PDB:1RGT PDB:1RGU PDB:1RH0
PDBsum:1JY1 PDBsum:1MU7 PDBsum:1MU9 PDBsum:1NOP PDBsum:1QZQ
PDBsum:1RFF PDBsum:1RFI PDBsum:1RG1 PDBsum:1RG2 PDBsum:1RGT
PDBsum:1RGU PDBsum:1RH0 ProteinModelPortal:Q9NUW8 SMR:Q9NUW8
IntAct:Q9NUW8 MINT:MINT-3074488 STRING:Q9NUW8 PhosphoSite:Q9NUW8
DMDM:37999797 PaxDb:Q9NUW8 PRIDE:Q9NUW8 Ensembl:ENST00000335725
Ensembl:ENST00000393454 GeneID:55775 KEGG:hsa:55775 UCSC:uc001xxy.3
CTD:55775 GeneCards:GC14P090422 HGNC:HGNC:18884 MIM:607198
MIM:607250 neXtProt:NX_Q9NUW8 Orphanet:94124 PharmGKB:PA421
HOGENOM:HOG000067775 HOVERGEN:HBG061242 InParanoid:Q9NUW8
OrthoDB:EOG4NP736 PhylomeDB:Q9NUW8 SABIO-RK:Q9NUW8 BindingDB:Q9NUW8
ChEMBL:CHEMBL1075138 EvolutionaryTrace:Q9NUW8 GenomeRNAi:55775
NextBio:60841 ArrayExpress:Q9NUW8 Bgee:Q9NUW8 CleanEx:HS_TDP1
Genevestigator:Q9NUW8 GermOnline:ENSG00000042088
Length = 608
Score = 643 (231.4 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 150/351 (42%), Positives = 205/351 (58%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 207 DVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 266
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDY 116
MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI Y
Sbjct: 267 MLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISY 326
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L P + V LI S PG GS WGH +L+
Sbjct: 327 LMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLK 376
Query: 177 TVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEP 231
+L++ +S P+V QFSS+GSL DE KW+ +E E KTP P
Sbjct: 377 KLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP 436
Query: 232 L-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKT 289
L +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT
Sbjct: 437 LYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKT 496
Query: 290 FARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 338
+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 497 YMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 547
Score = 66 (28.3 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y S+D PW W+ Y K D +G +W
Sbjct: 581 YGSKDRPWIWNIPYVKAPDTHGNMW 605
>UNIPROTKB|E2REL5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:AAEX03005923
RefSeq:XP_547950.2 Ensembl:ENSCAFT00000027726 GeneID:490828
KEGG:cfa:490828 Uniprot:E2REL5
Length = 609
Score = 641 (230.7 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 157/376 (41%), Positives = 214/376 (56%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 208 DVDWLIKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 267
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLKDQ-NNLSEECG--FENDLIDY 116
MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P Q + S E F+ DLI Y
Sbjct: 268 MLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRMAQATHRSGESATHFKADLISY 327
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L +A L V LI S PG GS WGH +LR
Sbjct: 328 LMAYN----AAPLKEW------IDTIHEHDLSETNVYLIGSTPGRFQGSHKDNWGHFRLR 377
Query: 177 TVLQE--CTFEKGFKKSPLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGE 230
+L+E + KG + P+V QFSS+GS+ D KW+ +E E +TP
Sbjct: 378 KLLREHASSITKG-ESWPIVGQFSSIGSMGADDSKWLCSEFKESLVTLGKESRTPGKSAV 436
Query: 231 PL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIK 288
PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIK
Sbjct: 437 PLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWMADTSGRSNAMPHIK 496
Query: 289 TFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFS 346
T+ R + ++AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA F
Sbjct: 497 TYMRSSPDFSQIAWFLVTSANLSKAAWGALEKNGAQLMIRSYELGVLFLPSA------FG 550
Query: 347 CTSNIVPSEIKSGSTE 362
S V + SGS E
Sbjct: 551 LDSFKVKQKFFSGSKE 566
Score = 68 (29.0 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y ++D PW W+ YTK D +G +W
Sbjct: 582 YGNKDRPWIWNIPYTKAPDTHGNMW 606
>MGI|MGI:1920036 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO] InterPro:IPR010347 Pfam:PF06087
MGI:MGI:1920036 GO:GO:0005634 GO:GO:0004527 GO:GO:0090305
GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417 PANTHER:PTHR12415
HOGENOM:HOG000067775 HOVERGEN:HBG061242 EMBL:AK033868 EMBL:BC019804
IPI:IPI00222253 UniGene:Mm.312323 UniGene:Mm.487464
UniGene:Mm.488658 ProteinModelPortal:Q8BJ37 SMR:Q8BJ37
IntAct:Q8BJ37 STRING:Q8BJ37 PhosphoSite:Q8BJ37 PaxDb:Q8BJ37
PRIDE:Q8BJ37 InParanoid:Q8BJ37 CleanEx:MM_TDP1
Genevestigator:Q8BJ37 GermOnline:ENSMUSG00000021177 Uniprot:Q8BJ37
Length = 609
Score = 622 (224.0 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 150/352 (42%), Positives = 206/352 (58%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ + + + KP AN L + L I+FGTHH+K
Sbjct: 208 DVDWLIKQYPPEFRKNPILLVHGDKREAKADLHAQAKPYANISLCQAKLDIAFGTHHTKM 267
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLKDQ-NNLSEECG--FENDLIDY 116
MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +P DQ ++ + E F+ DL Y
Sbjct: 268 MLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLYPRIDQGSHTAGESSTRFKADLTSY 327
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L+ P + V LI S PG GS WGH +LR
Sbjct: 328 LTAYNAPPLQEWIDI----------IQEHDLSETNVYLIGSTPGRFQGSHRDNWGHFRLR 377
Query: 177 TVLQEC--TFEKGFKKSPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGE 230
+LQ + KG + P+V QFSS+GSL DE KW+ +E E + P
Sbjct: 378 KLLQAHAPSTPKG-ECWPIVGQFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAV 436
Query: 231 PL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIK 288
PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A +GRS AMPHIK
Sbjct: 437 PLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIK 496
Query: 289 TFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 338
T+ R + KLAWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 497 TYMRPSPDFSKLAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 548
Score = 65 (27.9 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y S+D PW W+ Y K D +G +W
Sbjct: 582 YRSKDRPWIWNIPYVKAPDTHGNMW 606
>UNIPROTKB|F1NSQ5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000012 "single strand break repair" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
GO:GO:0003690 GO:GO:0003697 GO:GO:0006302 GO:GO:0000012
GO:GO:0017005 GeneTree:ENSGT00390000002211 PANTHER:PTHR12415
OMA:WGHLRLR EMBL:AADN02003623 IPI:IPI00587496
Ensembl:ENSGALT00000017359 Uniprot:F1NSQ5
Length = 602
Score = 613 (220.8 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 148/376 (39%), Positives = 210/376 (55%)
Query: 2 VDIDWLLPACPVLAKIPHVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSK 59
+D+ WL+ P + +L++HGE + E + + +P N + L I+FGTHH+K
Sbjct: 197 IDVAWLVRQYPQEYRKKPLLIVHGEKRESKAELLAQARPFENISFCQAKLDIAFGTHHTK 256
Query: 60 AMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDF----PLKDQNNLSE-ECGFENDLI 114
MLL+Y G+R+++HT+NLI DW+ K+QG+W+ P ++ E E F++DLI
Sbjct: 257 MMLLLYEEGLRVVIHTSNLIAEDWHQKTQGIWLSPLYPRLPQGSSDSAGESETNFKSDLI 316
Query: 115 DYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMK 174
YL P + V L+ S PG + G +KWGH+K
Sbjct: 317 SYLMAYSSPVLKEWIDL----------IREHDLSETRVYLLGSTPGRYQGIDKEKWGHLK 366
Query: 175 LRTVLQECTFEKGFKKS-PLVYQFSSLGSLD---EKWM-AELXXXXXXXXXEDKTPLGIG 229
LR +L++ ++S P+V QFSS+GSL KW+ +E L
Sbjct: 367 LRKLLKDHASSIPAQESWPVVGQFSSIGSLGADGSKWLCSEFQESLVAAGSGVAALLKCD 426
Query: 230 EPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHI 287
P+ +V+PTV +VR SLEGY AG ++P + K +L Y+ KW A +GRS AMPHI
Sbjct: 427 VPIHLVYPTVSNVRQSLEGYPAGGSLPYSIQTAQKQLWLHSYFHKWSAEVSGRSHAMPHI 486
Query: 288 KTFAR--YNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGF 345
KT+ R ++ QK+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA G+
Sbjct: 487 KTYMRPSHDFQKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDKGY 546
Query: 346 SCTSNIVPSEIKSGST 361
+ SE K +T
Sbjct: 547 FHVKGNMLSEGKDSAT 562
Score = 74 (31.1 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 QRYSSEDVPWSWDKRYTKK-DVYGQVW 425
+RY S+D PW W+ YT D +G +W
Sbjct: 573 ERYGSKDQPWIWNIPYTSAPDTHGNMW 599
>RGD|1309618 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO;ISS] InterPro:IPR010347 Pfam:PF06087
RGD:1309618 GO:GO:0005634 GO:GO:0005737 GO:GO:0003690 GO:GO:0003697
GO:GO:0004527 GO:GO:0006302 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775
HOGENOM:HOG000067775 HOVERGEN:HBG061242 OrthoDB:EOG4NP736
EMBL:BC098739 IPI:IPI00367735 RefSeq:NP_001026827.1
UniGene:Rn.12661 ProteinModelPortal:Q4G056 SMR:Q4G056 STRING:Q4G056
PhosphoSite:Q4G056 PRIDE:Q4G056 Ensembl:ENSRNOT00000005167
GeneID:314380 KEGG:rno:314380 UCSC:RGD:1309618 InParanoid:Q4G056
NextBio:667547 Genevestigator:Q4G056 Uniprot:Q4G056
Length = 609
Score = 616 (221.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 149/352 (42%), Positives = 205/352 (58%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSKA 60
D++WL+ P + +L++HG+ + + + KP AN L + L I+FGTHH+K
Sbjct: 208 DVNWLIKQYPPEFRKKPILLVHGDKREAKADLHAQAKPYANISLCQAKLDIAFGTHHTKM 267
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDY 116
MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +P + N+ S E F+ DL Y
Sbjct: 268 MLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLYPRIYQGNHTSGESSTHFKADLTSY 327
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L P + V LI S PG GS WGH +LR
Sbjct: 328 LMAYNAPPLQEWIDI----------IQEHDLSETNVYLIGSTPGRFQGSHKDNWGHFRLR 377
Query: 177 TVLQEC--TFEKGFKKSPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGE 230
+LQ + +G + P+V QFSS+GSL DE KW+ +E E +TP
Sbjct: 378 KLLQAHAPSAPRG-ECWPVVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPGRSAV 436
Query: 231 PL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIK 288
PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A +GRS AMPHIK
Sbjct: 437 PLHLIYPSVENVRTSLEGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIK 496
Query: 289 TFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 338
T+ R + KLAWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 497 TYMRPSPDFSKLAWFLVTSANLSKAAWGALEKNGAQLMIRSYELGVLFLPSA 548
Score = 66 (28.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y S+D PW W+ Y K D +G +W
Sbjct: 582 YGSKDRPWIWNIPYVKAPDTHGNMW 606
>UNIPROTKB|F1MST1 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase activity"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:DAAA02030029
IPI:IPI00717294 RefSeq:NP_001180084.1 UniGene:Bt.26165
Ensembl:ENSBTAT00000017463 GeneID:517053 KEGG:bta:517053
NextBio:20872364 Uniprot:F1MST1
Length = 612
Score = 619 (223.0 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 153/375 (40%), Positives = 215/375 (57%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + VL++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 211 DVDWLIRQYPPEFRKKPVLLVHGDKREAKAHLLAEAKPYGNVTLCQAKLDIAFGTHHTKM 270
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP--LKDQNNLSEEC-GFENDLIDY 116
MLL+Y G+R+++HT+NLI DW+ K+QG+W+ +P + + E F+ DLI Y
Sbjct: 271 MLLLYEEGLRVVIHTSNLIREDWHQKTQGIWLSPLYPRIVHGTHGSGESATNFKADLISY 330
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L+ +A L V LIAS PG G+ WGH +LR
Sbjct: 331 LAAYN----AAPLKEW------IDTIQEHDLSETNVYLIASTPGRFQGNQKDNWGHFRLR 380
Query: 177 TVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEP 231
+L+E +S P++ QFSS+GS+ DE KW+ +E E +T LG P
Sbjct: 381 KLLKEHASPMPKAESWPVIGQFSSIGSMGADESKWLCSEFKESLVTLGKESRT-LGSAAP 439
Query: 232 L-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKT 289
L +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT
Sbjct: 440 LHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTSGRSNAMPHIKT 499
Query: 290 FARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSC 347
+ R + ++AWFL+TSANLSKAAWGAL+K+ +QLMIRSYELGVL LPSA F
Sbjct: 500 YLRPSPDFSQIAWFLVTSANLSKAAWGALEKSGTQLMIRSYELGVLFLPSA------FGL 553
Query: 348 TSNIVPSEIKSGSTE 362
S V + SGS++
Sbjct: 554 DSFKVKQKFFSGSSQ 568
Score = 61 (26.5 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y D PW W+ Y K D +G +W
Sbjct: 585 YGDRDRPWIWNIPYVKAPDTHGNMW 609
>UNIPROTKB|F1SDA7 [details] [associations]
symbol:LOC100625067 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 PANTHER:PTHR12415 OMA:WGHLRLR
EMBL:CU633760 Ensembl:ENSSSCT00000002701 Uniprot:F1SDA7
Length = 607
Score = 615 (221.5 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 157/379 (41%), Positives = 215/379 (56%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + VL++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 206 DVDWLVKQYPPEFRKKPVLLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 265
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQ----NNLSEECG--FENDLI 114
MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ PL + ++ S E F+ DLI
Sbjct: 266 MLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLS--PLYQRIVPGSHRSGESATHFKADLI 323
Query: 115 DYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMK 174
YLS ++A V LI S PG G WGH +
Sbjct: 324 SYLSA-----YNA-----AALKEWIDTIQEHDLSETNVYLIGSTPGRFQGDQKDNWGHFR 373
Query: 175 LRTVLQE--CTFEKGFKKSPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGI 228
LR +L+E + K + P+V QFSS+ S+ DE KW+ +E E +TP G
Sbjct: 374 LRKLLKENGSSIPKA-ESWPVVGQFSSISSMGADESKWLCSEFKESLVTLGKESRTPGG- 431
Query: 229 GEPL-IVWPTVEDVRCSLEGYA-AGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMP 285
PL +++P+VE+VR SLEGY AG ++P + +K +L Y+ KW A+ +GRS AMP
Sbjct: 432 AVPLHLIYPSVENVRTSLEGYPEAGGSLPYSIQTAEKQTWLHSYFHKWSAATSGRSNAMP 491
Query: 286 HIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGC 343
HIKT+ R + ++AWFL+TSANLSKAAWGAL+KN SQLMIRSYELGVL LP+A
Sbjct: 492 HIKTYMRPSPDFSQIAWFLVTSANLSKAAWGALEKNGSQLMIRSYELGVLFLPAA----- 546
Query: 344 GFSCTSNIVPSEIKSGSTE 362
F S V + SGS E
Sbjct: 547 -FGLDSFRVKQKFFSGSQE 564
Score = 65 (27.9 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y S+D PW W+ Y K D +G +W
Sbjct: 580 YGSKDRPWIWNIPYMKAPDTHGNMW 604
>ZFIN|ZDB-GENE-090909-1 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase 1"
species:7955 "Danio rerio" [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 ZFIN:ZDB-GENE-090909-1
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 KO:K10862 PANTHER:PTHR12415 CTD:55775
EMBL:BX005004 EMBL:BX927236 IPI:IPI00900849 RefSeq:XP_700174.2
UniGene:Dr.76799 Ensembl:ENSDART00000108712
Ensembl:ENSDART00000150149 GeneID:571485 KEGG:dre:571485
NextBio:20890577 Uniprot:E7FEK0
Length = 615
Score = 596 (214.9 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 148/368 (40%), Positives = 208/368 (56%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGES-DGTLEHMKRNKPANWILH-KPPLPISFGTHHSKA 60
DI W++ P + V+++HGE + +++ KP I + L I+FGTHH+K
Sbjct: 214 DIPWMVEQYPPEFRNKPVVLVHGEKRESKACLIEQAKPYPHISFCQAKLDIAFGTHHTKM 273
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLKDQNN---LSEEC-GFENDLID 115
MLL Y G R+I+ T+NLI DW K+QG+WM +P Q + E GF+ DL++
Sbjct: 274 MLLWYEEGFRVIILTSNLIRADWYQKTQGMWMSPLYPRLPQGSPGTAGESLTGFKRDLLE 333
Query: 116 YLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKL 175
YL + PE AN V LI S PG + G +++KWGH++L
Sbjct: 334 YLEAYRAPEL-ANW---------IERIKQHDLSETRVYLIGSTPGRYQGPAMEKWGHLRL 383
Query: 176 RTVLQECTFE-KGFKKSPLVYQFSSLGS--LDE-KWMAELXXXXXXXXXEDKTPLGIGEP 231
R +L E T + ++ ++ QFSS+GS LD+ KW+A + L E
Sbjct: 384 RKLLSEHTQPMQNEERWHVLGQFSSIGSMGLDKTKWLAAEFQRTLTTLGKAGKSLASPET 443
Query: 232 --LIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIK 288
L+++P+VE+VR SLEGY AG ++P + K +L Y+ W A TGRS AMPHIK
Sbjct: 444 QMLLIYPSVENVRTSLEGYPAGGSLPYSIQTAQKQLWLHSYFHGWHADVTGRSNAMPHIK 503
Query: 289 TFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFS 346
T+ R + +LAWFL+TSANLSKAAWGAL+KNN+Q+M+RSYELGVL LPSA F
Sbjct: 504 TYMRISPDFTQLAWFLVTSANLSKAAWGALEKNNTQIMVRSYELGVLYLPSAFNMST-FP 562
Query: 347 CTSNIVPS 354
N+ P+
Sbjct: 563 VEKNVFPA 570
Score = 84 (34.6 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 400 QRYSSEDVPWSWDKRYTKK-DVYGQVW 425
QRYSS+D PW W+ YT+ D +G VW
Sbjct: 586 QRYSSKDRPWIWNIPYTQAPDTHGNVW 612
>UNIPROTKB|G3V2F4 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 ProteinModelPortal:G3V2F4 SMR:G3V2F4
Ensembl:ENST00000555880 ArrayExpress:G3V2F4 Bgee:G3V2F4
Uniprot:G3V2F4
Length = 578
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 153/358 (42%), Positives = 208/358 (58%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 207 DVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 266
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDY 116
MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI Y
Sbjct: 267 MLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISY 326
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L P + V LI S PG GS WGH +L+
Sbjct: 327 LMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLK 376
Query: 177 TVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEP 231
+L++ +S P+V QFSS+GSL DE KW+ +E E KTP P
Sbjct: 377 KLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP 436
Query: 232 L-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKT 289
L +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT
Sbjct: 437 LYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKT 496
Query: 290 FARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAK-RHGCG 344
+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA HG G
Sbjct: 497 YMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFIGHGYG 554
>UNIPROTKB|E7EPD8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 IPI:IPI00872094
ProteinModelPortal:E7EPD8 SMR:E7EPD8 Ensembl:ENST00000393452
UCSC:uc010atn.3 ArrayExpress:E7EPD8 Bgee:E7EPD8 Uniprot:E7EPD8
Length = 589
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 159/398 (39%), Positives = 222/398 (55%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 207 DVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 266
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDY 116
MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI Y
Sbjct: 267 MLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISY 326
Query: 117 LSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLR 176
L P + V LI S PG GS WGH +L+
Sbjct: 327 LMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLK 376
Query: 177 TVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEP 231
+L++ +S P+V QFSS+GSL DE KW+ +E E KTP P
Sbjct: 377 KLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP 436
Query: 232 L-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKT 289
L +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT
Sbjct: 437 LYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKT 496
Query: 290 FARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSC 347
+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA F+
Sbjct: 497 YMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA------FAP 550
Query: 348 TSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGAS 385
I E+++ + + Q Q V L W ++ S
Sbjct: 551 AKRI-KDEVEASFSGSRQFQSETEV-LRWQPGANGHLS 586
>UNIPROTKB|Q86TV8 [details] [associations]
symbol:TDP1 "Full-length cDNA clone CS0DI031YK16 of
Placenta of Homo sapiens (human)" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415 EMBL:AL137128
UniGene:Hs.209945 HGNC:HGNC:18884 EMBL:BX161451 IPI:IPI00384157
HSSP:Q9NUW8 SMR:Q86TV8 STRING:Q86TV8 Ensembl:ENST00000357382
UCSC:uc001xya.3 HOGENOM:HOG000147157 HOVERGEN:HBG067466
Uniprot:Q86TV8
Length = 369
Score = 556 (200.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 130/293 (44%), Positives = 174/293 (59%)
Query: 59 KAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLI 114
K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI
Sbjct: 26 KMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLI 85
Query: 115 DYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMK 174
YL P + V LI S PG GS WGH +
Sbjct: 86 SYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFR 135
Query: 175 LRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIG 229
L+ +L++ +S P+V QFSS+GSL DE KW+ +E E KTP
Sbjct: 136 LKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSS 195
Query: 230 EPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHI 287
PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHI
Sbjct: 196 VPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHI 255
Query: 288 KTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 338
KT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 256 KTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 308
Score = 66 (28.3 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 402 YSSEDVPWSWDKRYTKK-DVYGQVW 425
Y S+D PW W+ Y K D +G +W
Sbjct: 342 YGSKDRPWIWNIPYVKAPDTHGNMW 366
>WB|WBGene00018678 [details] [associations]
symbol:F52C12.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR001736 InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
GO:GO:0008081 EMBL:FO081438 PIR:A88641 RefSeq:NP_500149.1
ProteinModelPortal:Q9TXV7 STRING:Q9TXV7 PaxDb:Q9TXV7
EnsemblMetazoa:F52C12.1.1 EnsemblMetazoa:F52C12.1.2 GeneID:176996
KEGG:cel:CELE_F52C12.1 UCSC:F52C12.1 CTD:176996 WormBase:F52C12.1
eggNOG:NOG274417 GeneTree:ENSGT00390000002211 HOGENOM:HOG000199611
InParanoid:Q9TXV7 KO:K10862 OMA:VIHTANM NextBio:894908
PANTHER:PTHR12415 Uniprot:Q9TXV7
Length = 451
Score = 389 (142.0 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 116/352 (32%), Positives = 175/352 (49%)
Query: 1 MVDIDWLLPACPV-LAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSK 59
M+D ++L+ + P L + P LV+ L +N+ ++ LPI FGTHH+K
Sbjct: 75 MLDFEFLIGSYPPSLREYPITLVVGAPDAPDLLKCTKNQKLVTVVGAS-LPIPFGTHHTK 133
Query: 60 AMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLS 118
+L G +IV TANL+ DW K+Q + +F +K + F++DL++YLS
Sbjct: 134 MSILEDEDGRFHVIVSTANLVPDDWEFKTQQFYY-NFGVKIASGTVPRSDFQDDLLEYLS 192
Query: 119 TLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTV 178
+ + RLI S PGYHT ++ GH +L +
Sbjct: 193 MYR-----------NQLDTWKQLLQKVDFSQISDRLIFSTPGYHTDPPTQRPGHPRLFRI 241
Query: 179 LQE-CTFEKGFK---KSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPL-- 232
L E F+ ++ + V Q SS+GSL + E P +P
Sbjct: 242 LSEKFPFDASYEHTERCTFVAQCSSIGSLGSAPI-NWFRGQFLQSLEGANPSPKQKPAKM 300
Query: 233 -IVWPTVEDVRCSLEGYAAGNAIPSPQK-NVDKDFLKKYWAKWKASHTGRSRAMPHIKTF 290
+V+P+VEDVR S +GYA G ++P + + +L+ KW+++ R+ A+PH KT+
Sbjct: 301 YLVFPSVEDVRTSCQGYAGGCSVPYRNSVHARQKWLQGNMCKWRSNAKRRTNAVPHCKTY 360
Query: 291 ARYNGQKLAWFLLTSANLSKAAWGALQ----KNNSQLMIRSYELGVLIL-PS 337
+Y+ + W LLTSANLSKAAWG + KN QLMIRS+E+GVLI PS
Sbjct: 361 VKYDKKVAIWQLLTSANLSKAAWGEVSFNKSKNVEQLMIRSWEMGVLITDPS 412
Score = 62 (26.9 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 402 YSSEDVPWSWDKRYTKKDVYGQVW 425
YS+ D P+ DK++ K D+ G +W
Sbjct: 425 YSATDEPFVTDKKHEKPDILGCIW 448
>FB|FBgn0260817 [details] [associations]
symbol:gkt "glaikit" species:7227 "Drosophila melanogaster"
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0045197 "establishment or maintenance of
epithelial cell apical/basal polarity" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
EMBL:AE014134 GO:GO:0006281 GO:GO:0007417 GO:GO:0004527
GO:GO:0090305 InterPro:IPR019406 Pfam:PF10283 GO:GO:0017005
GO:GO:0045197 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 EMBL:AJ277122 EMBL:AY051884
EMBL:AY060810 RefSeq:NP_523465.2 UniGene:Dm.3843
ProteinModelPortal:Q9VQM4 SMR:Q9VQM4 MINT:MINT-1647814
STRING:Q9VQM4 PaxDb:Q9VQM4 PRIDE:Q9VQM4 EnsemblMetazoa:FBtr0077574
GeneID:33530 KEGG:dme:Dmel_CG8825 CTD:33530 FlyBase:FBgn0260817
InParanoid:Q9VQM4 OMA:WGHLRLR OrthoDB:EOG4HMGRD PhylomeDB:Q9VQM4
GenomeRNAi:33530 NextBio:784060 Bgee:Q9VQM4 GermOnline:CG8825
Uniprot:Q9VQM4
Length = 580
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 127/357 (35%), Positives = 177/357 (49%)
Query: 1 MVDIDWLLPA---CPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHH 57
MVDI WLL +L K P +L+ ES L K + I K P P F T H
Sbjct: 192 MVDIGWLLGHYYFAGILDK-PLLLLYGDESPELLSIGKFKQQVTAIRVKMPTP--FATSH 248
Query: 58 SKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQD----FPLKDQNNLSEEC-GFEN 111
+K M L Y G +R+++ TANL DW+N++QGLW+ P+ E GF+
Sbjct: 249 TKMMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWISPKLPALPVDADTGAGESLTGFKQ 308
Query: 112 DLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLK--K 169
DL+ YL K + + V + SVPG H S++
Sbjct: 309 DLMLYLVEYKISQLQPWI----------ARIRNSDFSAINVFFLGSVPGGHREGSVRGHP 358
Query: 170 WGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLG-I 228
WGH +L ++L + + P+V Q SS+GSL A + +D TP+G +
Sbjct: 359 WGHARLASLLAKHAAPID-DRIPVVCQSSSIGSLGANVQAWIQQDFVNSLKKDSTPVGKL 417
Query: 229 GE--PL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAM 284
+ P +++P+ +V S +G G +P + DK +LK Y +WK+S RSRAM
Sbjct: 418 RQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSDRFRSRAM 477
Query: 285 PHIKTFARYN--GQKLAWFLLTSANLSKAAWGALQKN-NSQ--LMIRSYELGVLILP 336
PHIK++ R+N Q + WF+LTSANLSKAAWG KN N Q L I +YE GVL LP
Sbjct: 478 PHIKSYTRFNLEDQSVYWFVLTSANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLP 534
>UNIPROTKB|H0YJ44 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000556063
Uniprot:H0YJ44
Length = 281
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 94/184 (51%), Positives = 123/184 (66%)
Query: 164 GSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXX 218
GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 5 GSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTL 64
Query: 219 XXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKAS 276
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A
Sbjct: 65 GKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAE 124
Query: 277 HTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 334
+GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL
Sbjct: 125 TSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLF 184
Query: 335 LPSA 338
LPSA
Sbjct: 185 LPSA 188
>UNIPROTKB|G4N013 [details] [associations]
symbol:MGG_06176 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CM001233 GO:GO:0006281
GO:GO:0008081 KO:K10862 PANTHER:PTHR12415 RefSeq:XP_003712058.1
EnsemblFungi:MGG_06176T0 GeneID:2684314 KEGG:mgr:MGG_06176
Uniprot:G4N013
Length = 555
Score = 230 (86.0 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 81/271 (29%), Positives = 128/271 (47%)
Query: 3 DIDWLLPACPV-LAKIPHVLVIHG---ESDGT--LEHMKRNKPANWILHKPPLPISFGTH 56
DI++LL A + + V V+HG + D + L K N +LH LP FGTH
Sbjct: 124 DIEFLLDALDQDVRDVVKVHVVHGFWKKDDPSRILLQDDAEKHKNVVLHTAFLPEIFGTH 183
Query: 57 HSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLKDQNNLSEECGFENDLI 114
HSK ++L+ + ++I+HTAN+I DW N + G+W+ PL + ++ +EN L
Sbjct: 184 HSKMLVLLRHDDTAQVIIHTANMIPKDWTNMTNGIWLSPRLPLLQGQDPADASQYEN-LA 242
Query: 115 DYLSTLKWPEFSANLPAHGXXXXX--XXXXXXXXXXXAAVR--LIASVPGYH--TGSSLK 168
+ + L A+ +++R LIASVPG H T S
Sbjct: 243 EGTGYKFKIDLLNYLRAYDDKRVVCRDLVTNLEKYDFSSIRGTLIASVPGRHDFTDLSTS 302
Query: 169 KWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLD--EKWMAELXXXXXXXXXEDKTPL 226
WG + ++ L+ + G KS +V Q SS+ +L + W L KT
Sbjct: 303 AWGWVAIKRALRSVPLQVG--KSEVVTQISSIATLGPTDTW---LQRTLFESMCRGKTT- 356
Query: 227 GIG-EPL--IVWPTVEDVRCSLEGYAAGNAI 254
G+ P I++PT +++R SL+GY +G +I
Sbjct: 357 GVAPRPQFKIIFPTADEIRRSLDGYGSGGSI 387
Score = 165 (63.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 279 GRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336
GR+RA PHIKT+ RY + W LL+SANLSK AWG SQ I S+E+GVL+ P
Sbjct: 430 GRNRAAPHIKTYIRYGANSIDWALLSSANLSKQAWGDATGAGSQTRISSWEIGVLVWP 487
Score = 54 (24.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 400 QRYSSEDVPWSWDKRYTKKDVYGQVW 425
Q+Y + +VPW Y++ D G W
Sbjct: 530 QKYGNGEVPWVATLSYSEPDWAGNTW 555
>ASPGD|ASPL0000004965 [details] [associations]
symbol:AN5903 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA
phosphodiesterase activity" evidence=IEA] [GO:0000012 "single
strand break repair" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 EMBL:BN001301 EMBL:AACD01000101
GO:GO:0008081 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 OrthoDB:EOG4KD9W6 RefSeq:XP_663507.1
EnsemblFungi:CADANIAT00007130 GeneID:2870818 KEGG:ani:AN5903.2
HOGENOM:HOG000163738 Uniprot:Q5B0M7
Length = 586
Score = 206 (77.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 87/315 (27%), Positives = 138/315 (43%)
Query: 3 DIDWLLPACPV-LAKIPHVLVIHGESDGTLEHMKR-NKPANWILHKPPL----PISFGTH 56
D+D+L+ + + V V+HG E+ R K + P+ P FGTH
Sbjct: 121 DVDFLMDQFDEDVRNLVRVKVVHGSWKKDSENRVRIEKACQRYPNVEPIVAYMPEPFGTH 180
Query: 57 HSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQGLWMQDF-PL----KDQNNLSEECG-- 108
HSK M+L+ + ++++HTAN++ DW + Q +W PL +D+N+ + G
Sbjct: 181 HSKMMILLRHDDFAQVVIHTANMLAGDWGDMCQAIWRSPLLPLTDGHEDKNSTAWGTGAR 240
Query: 109 FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVR--LIASVPGYHT--- 163
F+ DL+ YL A+G +AVR LIASVP
Sbjct: 241 FKRDLLAYLK------------AYGVKKTGPLVEQLGKYDFSAVRAALIASVPSKQKVDA 288
Query: 164 ----GSSLKKWGH--MK--LRTV-LQECTFEKGFKKSP-LVYQFSSLGSLDE--KWMAEL 211
G+S KWG +K LR V L+E G P +V Q SS+ +L + KW+ ++
Sbjct: 289 SSIDGNSKTKWGWPALKEALRNVPLRENVGADGTATVPHIVTQISSIATLGQTDKWLKDV 348
Query: 212 XXXXXXXXXED-KTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI----PSPQKNVDKDFL 266
KT +++PT E++R SL+GY G +I S + +L
Sbjct: 349 FFNALAASSSSTKTRPRYS---VIFPTAEEIRRSLKGYGYGGSIHMKLQSAAQKKQLQYL 405
Query: 267 KKYWAKWKASHTGRS 281
+ Y W +G++
Sbjct: 406 RPYLCHWAGDVSGQA 420
Score = 141 (54.7 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 279 GRSRAMPHIKTFARYNGQKLA---WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335
GR RA PHIKT+ R+ Q + W L+TSANLS AWGA ++ + S+E+GVL+
Sbjct: 428 GRRRAAPHIKTYIRFADQHMRSIDWALVTSANLSTQAWGAAANAAGEVRVCSWEIGVLVW 487
Query: 336 P 336
P
Sbjct: 488 P 488
Score = 54 (24.1 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 402 YSSEDVPWSWDKRYTKKDVYGQVW 425
YS++D PW + + D GQ W
Sbjct: 547 YSTQDEPWCATMSHIEPDWLGQTW 570
>POMBASE|SPCP31B10.05 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase Tdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000012 "single strand
break repair" evidence=IMP] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 PomBase:SPCP31B10.05 GO:GO:0005634
EMBL:CU329672 GO:GO:0004527 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 PIR:T41695 RefSeq:NP_587861.1 HSSP:P38319
ProteinModelPortal:Q9USG9 STRING:Q9USG9 EnsemblFungi:SPCP31B10.05.1
GeneID:2539579 KEGG:spo:SPCP31B10.05 OrthoDB:EOG4KD9W6
NextBio:20800737 Uniprot:Q9USG9
Length = 536
Score = 232 (86.7 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 77/212 (36%), Positives = 110/212 (51%)
Query: 150 AAVR--LIASVPGYHTGSSLKKWGHMKLRTVLQ--ECTFEKG----FKKSPL-VYQFSSL 200
+A+R I SVPG G WG KL+ +L+ E +K F++S + + Q SS+
Sbjct: 257 SAIRAIFIGSVPGKFEGEEESSWGLGKLKKILKMLEKDSKKDEKTKFEESDICISQCSSM 316
Query: 201 GSLDEK--WMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI---- 254
GS K ++AEL D G ++PTV++V+ S+ G+ +G++I
Sbjct: 317 GSFGPKQEYIAELT---------DGFGCQRGNWKFLFPTVKEVQQSMLGWQSGSSIHFNI 367
Query: 255 --PSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSK 310
+ V+ K KW A GR R PHIKT+ R++ G+ L W L+TSANLSK
Sbjct: 368 LGKTAASQVETLKKGKNLCKWVAMKAGRQRVAPHIKTYMRFSNDGELLRWVLVTSANLSK 427
Query: 311 AAWGALQ----KNNSQ--LMIRSYELGVLILP 336
AWG L+ K+ S L IRSYE GVL+ P
Sbjct: 428 PAWGTLEGHKAKSRSTRGLRIRSYEAGVLLYP 459
Score = 105 (42.0 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 2 VDIDWLLPA--CPVLAKIPHVLVIHG---ESDGT--LEHMKRNKPANWILHKPPLPISFG 54
VD+++LL V + V + HG +SD L + P N L+ +P+ +G
Sbjct: 62 VDLNFLLENMHASVFPTVD-VRITHGYDSKSDSLARLTAQMNHCPVNVKLYSVYVPM-WG 119
Query: 55 THHSKAMLLIYPR-GVRIIVHTANLIHVDWNNKSQGLW 91
THHSK M+ + +I++HTANL+ DW SQ ++
Sbjct: 120 THHSKIMVNFFKDDSCQIVIHTANLVEPDWIGMSQAIF 157
Score = 50 (22.7 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 402 YSSEDVPWSWDKRYTKKDVYGQVWP 426
Y +D WS T KD G VWP
Sbjct: 509 YEDKDEIWSPVINRTDKDWLGYVWP 533
>UNIPROTKB|G3V2J6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2J6 SMR:G3V2J6 Ensembl:ENST00000553617
ArrayExpress:G3V2J6 Bgee:G3V2J6 Uniprot:G3V2J6
Length = 219
Score = 221 (82.9 bits), Expect = 8.3e-18, P = 8.3e-18
Identities = 43/108 (39%), Positives = 67/108 (62%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 108 DVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 167
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEE 106
MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E
Sbjct: 168 MLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGE 215
>UNIPROTKB|Q9BRS7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 UniGene:Hs.209945 HGNC:HGNC:18884 HSSP:Q9NUW8
EMBL:BC006083 IPI:IPI01015250 SMR:Q9BRS7 STRING:Q9BRS7
Ensembl:ENST00000545686 Uniprot:Q9BRS7
Length = 298
Score = 204 (76.9 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 207 DVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 266
Query: 61 MLLIYPRGVRIIVHTANLIHVDWNNKSQG 89
MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 267 MLLLYEEGLRVVIHTSNLIHADWHQKTQG 295
>UNIPROTKB|H0YJL7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000557782 Bgee:H0YJL7
Uniprot:H0YJL7
Length = 51
Score = 159 (61.0 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 49 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQG 89
L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 3 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQG 43
>DICTYBASE|DDB_G0273869 [details] [associations]
symbol:DDB_G0273869 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 103 (41.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 297 KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335
K W S N S +AWGA QKN SQ+ I ++E+GVL+L
Sbjct: 655 KYDWVYTGSHNFSLSAWGAFQKNESQVSISNFEIGVLLL 693
Score = 97 (39.2 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 47 PPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNN 102
PPL ++ +HSK M+ + VR+++ ++N D++ Q +W QDF K NN
Sbjct: 293 PPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 151 AVRLIASVPGYH 162
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
>DICTYBASE|DDB_G0273125 [details] [associations]
symbol:DDB_G0273125 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 103 (41.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 297 KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335
K W S N S +AWGA QKN SQ+ I ++E+GVL+L
Sbjct: 655 KYDWVYTGSHNFSLSAWGAFQKNESQVSISNFEIGVLLL 693
Score = 97 (39.2 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 47 PPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNN 102
PPL ++ +HSK M+ + VR+++ ++N D++ Q +W QDF K NN
Sbjct: 293 PPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNPTKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 151 AVRLIASVPGYH 162
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
>UNIPROTKB|G3V2U6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2U6 SMR:G3V2U6 Ensembl:ENST00000554180
ArrayExpress:G3V2U6 Bgee:G3V2U6 Uniprot:G3V2U6
Length = 279
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 3 DIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKA 60
D+DWL+ P + +L++HG+ H+ KP N L + L I+FGTHH+K
Sbjct: 207 DVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKM 266
Query: 61 MLLIYPRGVRIIV 73
MLL+Y G+R+++
Sbjct: 267 MLLLYEEGLRVVI 279
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 437 399 0.00097 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 631 (67 KB)
Total size of DFA: 307 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.08u 0.14s 30.22t Elapsed: 00:00:01
Total cpu time: 30.08u 0.14s 30.22t Elapsed: 00:00:01
Start: Tue May 21 05:26:23 2013 End: Tue May 21 05:26:24 2013