Query 013748
Match_columns 437
No_of_seqs 151 out of 339
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2031 Tyrosyl-DNA phosphodie 100.0 4E-102 9E-107 781.6 26.6 391 1-428 121-519 (519)
2 PF06087 Tyr-DNA_phospho: Tyro 100.0 1.1E-92 2.3E-97 739.9 12.5 365 1-403 43-443 (443)
3 PF13091 PLDc_2: PLD-like doma 95.2 0.015 3.2E-07 49.6 2.9 38 283-335 73-110 (126)
4 PF00614 PLDc: Phospholipase D 90.3 0.2 4.3E-06 32.4 1.7 25 53-80 2-26 (28)
5 smart00155 PLDc Phospholipase 89.0 0.35 7.6E-06 30.8 2.2 25 283-311 3-27 (28)
6 PRK13912 nuclease NucT; Provis 89.0 0.49 1.1E-05 43.7 4.1 38 282-334 117-154 (177)
7 smart00155 PLDc Phospholipase 88.7 0.44 9.6E-06 30.4 2.5 25 53-80 2-26 (28)
8 PF09565 RE_NgoFVII: NgoFVII r 84.9 0.96 2.1E-05 45.5 3.8 42 286-336 82-123 (296)
9 cd00138 PLDc Phospholipase D. 84.5 0.92 2E-05 40.9 3.2 38 283-335 112-149 (176)
10 COG1502 Cls Phosphatidylserine 81.9 1.1 2.3E-05 46.8 2.9 40 283-337 353-392 (438)
11 PRK01642 cls cardiolipin synth 77.9 2.1 4.5E-05 45.9 3.5 38 283-335 398-435 (483)
12 PF13091 PLDc_2: PLD-like doma 77.5 2.8 6.1E-05 35.4 3.6 30 54-86 73-102 (126)
13 cd00138 PLDc Phospholipase D. 76.8 2.7 5.9E-05 37.8 3.6 38 53-93 111-149 (176)
14 PRK11263 cardiolipin synthase 76.7 2.2 4.7E-05 44.9 3.3 39 283-336 286-324 (411)
15 PRK12452 cardiolipin synthetas 69.2 4 8.7E-05 44.1 3.2 39 283-336 424-462 (509)
16 PRK13912 nuclease NucT; Provis 68.4 4.6 0.0001 37.2 3.0 31 52-85 116-146 (177)
17 PRK09428 pssA phosphatidylseri 67.8 6 0.00013 42.2 4.1 42 280-336 351-392 (451)
18 PF09565 RE_NgoFVII: NgoFVII r 55.3 8.9 0.00019 38.6 2.5 26 56-81 81-107 (296)
19 COG3886 Predicted HKD family n 40.5 24 0.00053 33.2 2.7 32 282-314 117-148 (198)
20 KOG3603 Predicted phospholipas 40.4 26 0.00057 36.9 3.3 39 281-334 166-204 (456)
21 PHA02820 phospholipase-D-like 34.3 34 0.00075 36.1 3.1 34 286-334 115-148 (424)
22 PLN02352 phospholipase D epsil 29.3 31 0.00068 39.1 1.8 26 56-84 608-633 (758)
23 PLN03008 Phospholipase D delta 21.9 69 0.0015 36.8 2.8 36 52-87 368-408 (868)
24 KOG1329 Phospholipase D1 [Lipi 20.6 59 0.0013 37.3 2.0 24 57-83 703-726 (887)
No 1
>KOG2031 consensus Tyrosyl-DNA phosphodiesterase [Replication, recombination and repair]
Probab=100.00 E-value=4.2e-102 Score=781.57 Aligned_cols=391 Identities=45% Similarity=0.748 Sum_probs=333.8
Q ss_pred CcchhhhcccCCCCCCCCeEEEEeCCCCchhhhhhhcCCCceEEEcCCCCCCCCccccceeeeeeCCceEEEEeCCCCCc
Q 013748 1 MVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIH 80 (437)
Q Consensus 1 m~Dl~WLl~~~~~~~~~~~i~iv~g~~~~~~~~~~~~~~~n~~~~~p~mp~~~G~hHsKm~il~y~d~lRVVI~SANL~~ 80 (437)
|+|++||+.+||...+.+.|+++||+.++.........+.+++++.+.||++|||||+|||+|+|++|+||||+||||++
T Consensus 121 mvdid~Lv~~y~~~~~~~~i~l~~G~~d~~~~~~~~K~~~l~~~~~~~LpipF~thHtKm~~l~y~~G~rvvv~taNl~~ 200 (519)
T KOG2031|consen 121 MVDIDWLVGQYPPSVRIKPITLVHGEPDEARLLAQTKAPILVTVKLASLPIPFGTHHTKMIILFYEEGCRVVVHTANLIH 200 (519)
T ss_pred EeEHHHHHhhCcchhccCceEEEecCCchHHHHhhhhccceeeeecccccccccccccceEEEeccCccEEEEecCCcce
Confidence 89999999999865566778999998764433334456789999999999999999999999999999999999999999
Q ss_pred cccccccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhcCCCcccccCCCCCCccccccccccccccccceEEEEccCC
Q 013748 81 VDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPG 160 (437)
Q Consensus 81 ~DW~~~tQ~vW~~dfP~~~~~~~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~~v~LV~SvPG 160 (437)
.||++++|++|++|++++.......++.|+.||++||++|++|... .|+++|+++|||.++|+||+||||
T Consensus 201 ~Dw~~ktQ~~w~sp~~~~~~~~g~~~~~Fk~DLi~YL~~Y~~~~l~----------~~i~~lkk~DfS~i~v~fIgStPG 270 (519)
T KOG2031|consen 201 DDWNNKTQGFWCSPLLKIGDKKGVSPTGFKQDLIEYLNSYRLPQLK----------EWIASLKKVDFSAINVRFIGSTPG 270 (519)
T ss_pred ecccccccceeecCCcccccCCCCCCCchHHHHHHHHHHhccchhH----------HHHHHHHhcchhhceEEEEeecCC
Confidence 9999999999999988776667789999999999999999987543 346899999999999999999999
Q ss_pred CCCCCcchhhcHHHHHHHHHhccccCCCcccCeEEEecCCCCCchHHHHHHHHhccCCCCCCCCCCCC--CCcEEEccCc
Q 013748 161 YHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGI--GEPLIVWPTV 238 (437)
Q Consensus 161 ~h~g~~~~~~G~~~L~~~l~~~~~~~~~~~~~i~~Q~SSiGsl~~~wl~~f~~sl~~~~~~~~~~~~~--~~~~iifPT~ 238 (437)
++.|.....|||.||+++|+.+......++++++||+||+|+++..|...|...+..+..++..+.+. ++++||||||
T Consensus 271 ~f~gs~~~~WGh~kL~kiL~~~~~~~~~~r~~~v~q~sS~gsl~~~~~~~~~~~f~~~l~kdt~~~gk~~~~~yiIfPTv 350 (519)
T KOG2031|consen 271 KFQGSGLLSWGHNKLKKILKEHAASPYLERTPVVGQSSSIGSLGSLWSAWFIGDFVESLAKDTTPPGKLRPPFYIIFPTV 350 (519)
T ss_pred cccCcccccccHHHHHHHHHhhccCcccccCceeeeeeccccccchhhhhhhhhhccchhhccCCCCCCCCCeeEEcccH
Confidence 88887776799999999999987656668999999999999999887766666665554444444432 4689999999
Q ss_pred hhhhcCcccccCCccccCCCccch-hHHHHHHHhhhcCCCCCCCCCCCcceeeEeec--CCceeEEEEeccccchhhhhc
Q 013748 239 EDVRCSLEGYAAGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSKAAWGA 315 (437)
Q Consensus 239 ~~V~~S~~G~~~gg~i~~~~~~~~-~~~l~~~~~~w~~~~~~R~~~~PH~K~y~r~~--~~~~~W~lltSaNLS~aAWG~ 315 (437)
||||+|++||.+||||||..++.+ +.|+++|||||.+.+++|+|||||||||||++ ++.+.|||||||||||||||.
T Consensus 351 eeVrtS~~G~~~Ggsipy~~~~~~kq~~lk~y~~kW~A~~s~R~ramPHiKtYmr~~~d~q~l~W~LlTSANLSKaAWG~ 430 (519)
T KOG2031|consen 351 EEVRTSLLGYAGGGSLPYGKNTNEKQPWLKKYLCKWKAMDSRRSRAMPHIKTYMRFNLDDQKLAWFLLTSANLSKAAWGT 430 (519)
T ss_pred HHhhccccccccCceecccchhhhhhHHHHHHHHhhhhhhhhccccCCcceeeeeecCCCCEEEEEEEeccccchhhhhh
Confidence 999999999999999999877666 58999999999999999999999999999998 789999999999999999999
Q ss_pred cccCCc---eeeeeeeeeeeEEcCCcccCCCccccccCCCCcccccCCccchhhccceeeeeecCCCCCCCCCCcccccc
Q 013748 316 LQKNNS---QLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLP 392 (437)
Q Consensus 316 ~~k~~~---ql~i~nyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (437)
++++++ ||+|||||+||||+|..+.+..+++. +.-++..+.. ....+.||
T Consensus 431 l~kn~sk~~~LmIRsYEaGVLf~p~~~~~~kt~k~------------------------~~~tf~~~~~---~~~v~~vp 483 (519)
T KOG2031|consen 431 LSKNKSKQPQLMIRSYEAGVLFLPRFFANLKTFKV------------------------VEDTFPRDNN---GDGVIAVP 483 (519)
T ss_pred hccCCCCCchheeeecccceEecchhhhccccccc------------------------cceecccccC---CCCcceec
Confidence 999875 99999999999999998764222211 1111222211 12247899
Q ss_pred cccCCCCCCCCCCCCCceecCCCCCccCCCCCCccc
Q 013748 393 VPYELPPQRYSSEDVPWSWDKRYTKKDVYGQVWPRH 428 (437)
Q Consensus 393 vPy~lP~~~Y~~~D~Pw~~~~~y~~~D~~G~~w~~~ 428 (437)
||||||++||++.|+||++++.+..+|++|++|++.
T Consensus 484 vpydlPp~pY~~~d~~~~~~~~~~~~d~lG~vW~p~ 519 (519)
T KOG2031|consen 484 VPYDLPPVPYSPKDEPFFTDIYRQGPDWLGCVWTPN 519 (519)
T ss_pred cccCCCCcCCCccCCceeecccccCCcceeeccCCC
Confidence 999999999999999999997778899999999873
No 2
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=100.00 E-value=1.1e-92 Score=739.87 Aligned_cols=365 Identities=44% Similarity=0.723 Sum_probs=258.1
Q ss_pred CcchhhhcccCCCC-CCCCeEEEEeCCCCc-hhhhhhh--cCCCceEEEcCCCCCCCCccccceeeeeeCCc-eEEEEeC
Q 013748 1 MVDIDWLLPACPVL-AKIPHVLVIHGESDG-TLEHMKR--NKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHT 75 (437)
Q Consensus 1 m~Dl~WLl~~~~~~-~~~~~i~iv~g~~~~-~~~~~~~--~~~~n~~~~~p~mp~~~G~hHsKm~il~y~d~-lRVVI~S 75 (437)
|+|++|||++|+.. ++...|++|+|+.+. ....+++ ....|+++|.|+||.+|||||||||||+|+|| |||||||
T Consensus 43 ~~D~~wll~~~~~~~~~~~~i~~v~g~~~~~~~~~~~~~~~~~~nv~~~~~~mp~~~g~hHsKm~ll~y~~~~lRVvI~T 122 (443)
T PF06087_consen 43 MIDLDWLLSQFPPSTRKNIPITIVHGTKDPPDKREIRQQAAIYPNVKLIFPPMPIPFGTHHSKMMLLFYEDGSLRVVIPT 122 (443)
T ss_dssp SEEHHHHHCCS-CCGTTCEEEEEECTSEEHHHHHHHHHHHCCHTTEEEEEE---STT--B--EEEEEEETTCEEEEEEES
T ss_pred eeeHHHHHHhCCHhhcccceEEEEeCCCcchhhhhhhhhcccCCCeEEEccCCCcccccccceeEEEEeCCccEEEEEEC
Confidence 89999999999864 333468889995322 2223332 35679999999999999999999999999999 9999999
Q ss_pred CCCCccccccccceEEeecc-cCCCC---CCCCCCCCcHHHHHHHHHhcCCCcccccCCCCCCccccccccccccccccc
Q 013748 76 ANLIHVDWNNKSQGLWMQDF-PLKDQ---NNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAA 151 (437)
Q Consensus 76 ANL~~~DW~~~tQ~vW~~df-P~~~~---~~~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~~ 151 (437)
|||++.||+++||+||+||| |++.. ...+.+++|++||++||++|+.+.... +++.|++||||.++
T Consensus 123 aNl~~~Dw~~~~q~vw~~d~lP~~~~~~~~~~~~~~~F~~dL~~yL~~y~~~~~~~----------~~~~l~~yDFS~~~ 192 (443)
T PF06087_consen 123 ANLTPYDWNNKTQGVWIQDFLPRLPSSKSSSEESGSRFKKDLVAYLNSYGKSPLDK----------LIERLRKYDFSSAR 192 (443)
T ss_dssp S-BSHHHHCSSB-EEEE---E-B-ECTS-S--SSTTHHHHHHHHHHHTT--HHHHH----------CHHHHHTEE-CCGT
T ss_pred CCCCHHHHCCcceeEEEecccCcccccccccCCCCCchHHHHHHHHHHhCCcchhH----------HHHHHHhcCCccCc
Confidence 99999999999999999998 98754 334678999999999999998543211 15789999999999
Q ss_pred eEEEEccCCCCCCCcchhhcHHHHHHHHHhccccC---CCcccCeEEEecCCCCCc---hHHH-HHHHHhccCCCCC-CC
Q 013748 152 VRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK---GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSE-DK 223 (437)
Q Consensus 152 v~LV~SvPG~h~g~~~~~~G~~~L~~~l~~~~~~~---~~~~~~i~~Q~SSiGsl~---~~wl-~~f~~sl~~~~~~-~~ 223 (437)
|+||+||||+|. .+..+|||++|+++|++++... ..++.+|+||+||||+++ ..|| .+|+.+|...... ..
T Consensus 193 v~lV~SvPG~h~-~~~~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~Q~SSIGs~~~~~~~Wl~~~f~~sl~~~~~~~~~ 271 (443)
T PF06087_consen 193 VHLVASVPGKHK-EDKDKWGHMRLRKVLKRLGLPSNKDKDKESDIVCQFSSIGSLGSSPKDWLTSEFLTSLYPASFSSPS 271 (443)
T ss_dssp SEEEEE-SECCC-GGGGGSHHHHHHHHHHHCCTT---TTCCCCEEEEE-SBB---SSSTTTTTTTHHHHHCCHHCCT---
T ss_pred eEEEeccCcccc-CCCcchhHHHHHHHHHhccccccCCcCCCCeEEEEcccccccCcchhhhHHHHHHHHHhhccccccc
Confidence 999999999999 5556899999999999988754 346789999999999994 4587 5788877644320 00
Q ss_pred ----------CCCCCCCcEEEccCchhhhcCcccccCCccccCCCc----cchhHHHHHHHhhhcCC--CCCCCCCCCcc
Q 013748 224 ----------TPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQK----NVDKDFLKKYWAKWKAS--HTGRSRAMPHI 287 (437)
Q Consensus 224 ----------~~~~~~~~~iifPT~~~V~~S~~G~~~gg~i~~~~~----~~~~~~l~~~~~~w~~~--~~~R~~~~PH~ 287 (437)
.....++++|||||+||||+|.+||.+|||||++.+ +..+.+|+++||+|.+. .++|++++||+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~IvfPT~e~Vr~S~~G~~~ggsi~~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~R~~~~pH~ 351 (443)
T PF06087_consen 272 TPSSKSSSSQQENNRPPLKIVFPTVEEVRNSPEGYNGGGSIPFKYKWWEPNFPQEWLRPYFHKWYASDDPSGRSRAPPHI 351 (443)
T ss_dssp ---HHHHHHHCCHHTEEEEEE--BCHHHCTSTTGGGGGGGSB--HC--GHHCCHHHHHHCCE-EEEC-TGCTTTTS-B--
T ss_pred cccccccccccccCCCCceEECCCHHHHhhCccCCcCceeEEecchhccccchHHHHHHHHhhhccccccCCCCCcCcce
Confidence 011235789999999999999999999999999865 23467999999999998 89999999999
Q ss_pred eeeEeec---CCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcccCCCccccccCCCCcccccCCccch
Q 013748 288 KTFARYN---GQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETS 364 (437)
Q Consensus 288 K~y~r~~---~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (437)
|+|+|++ .+.++|+|+||||||+||||+.+++++|++||||||||||+|..... ...|.+..+....
T Consensus 352 K~y~~~~~~~~~~~~W~~lgShNLS~aAWG~~~~~~~~l~i~nyElGVl~~P~~~~~--~~~~~~~~~~~~~-------- 421 (443)
T PF06087_consen 352 KTYMRFSKNDFKSLGWFYLGSHNLSKAAWGKRSKNGSQLSIRNYELGVLFLPSSFGV--MLPVFSLDDPVYR-------- 421 (443)
T ss_dssp EEEEEEE-TTTSEECEEEEES--BSHHHH-EEETTTTCCEESSBEEEEEEEGGGCTS--SSSCEEEECCG----------
T ss_pred EEEEEecCCCCCccceEEeCcccCCHHHhcccccCCceeeecceEEEEEEecCcccc--ccccccccccccc--------
Confidence 9999997 57899999999999999999999999999999999999999886541 1223222111000
Q ss_pred hhccceeeeeecCCCCCCCCCCcccccccccCCCCCCCC
Q 013748 365 QIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYS 403 (437)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~ 403 (437)
.......+.|||||+||++||+
T Consensus 422 -----------------~~~~~~~~~v~vPf~lP~~~Y~ 443 (443)
T PF06087_consen 422 -----------------SISSTNTVPVPVPFDLPPTPYG 443 (443)
T ss_dssp ----------------------GGGCEEESS-SSEEE--
T ss_pred -----------------ccccCCCceEEecCCCCCcCcC
Confidence 1123446889999999999995
No 3
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=95.21 E-value=0.015 Score=49.62 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=26.8
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 335 (437)
...|.|+|+-- ++ .+++||+|||..+| -+|+|+||++.
T Consensus 73 ~~~H~K~~i~d-~~---~~iiGS~N~t~~~~-----------~~n~E~~~~~~ 110 (126)
T PF13091_consen 73 NRLHAKFYIID-DK---VAIIGSANLTSSSF-----------RRNYELGVIID 110 (126)
T ss_dssp S-B--EEEEET-TT---EEEEES--CSCCCS-----------CTSEEEEEEEE
T ss_pred cCCCcceEEec-Cc---cEEEcCCCCCcchh-----------cCCcceEEEEE
Confidence 36799999873 22 79999999999999 27899999984
No 4
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=90.27 E-value=0.2 Score=32.35 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=15.0
Q ss_pred CCccccceeeeeeCCceEEEEeCCCCCc
Q 013748 53 FGTHHSKAMLLIYPRGVRIIVHTANLIH 80 (437)
Q Consensus 53 ~G~hHsKm~il~y~d~lRVVI~SANL~~ 80 (437)
.++||+|++++ |+-+.+|.++||..
T Consensus 2 ~~~~H~K~~vv---D~~~a~vGg~nl~~ 26 (28)
T PF00614_consen 2 GGSHHQKFVVV---DDRVAFVGGANLCD 26 (28)
T ss_dssp TBEE---EEEE---TTTEEEEE---SSH
T ss_pred CcceeeEEEEE---cCCEEEECceecCC
Confidence 57899999998 44589999999864
No 5
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=89.04 E-value=0.35 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchh
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKA 311 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~a 311 (437)
...|.|+++-.. .|+++||+||+..
T Consensus 3 ~~~H~K~~v~D~----~~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDD----EIAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcC----CEEEEeCccCCCC
Confidence 457999887533 3899999999864
No 6
>PRK13912 nuclease NucT; Provisional
Probab=88.96 E-value=0.49 Score=43.70 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 013748 282 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 334 (437)
Q Consensus 282 ~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~ 334 (437)
...+|.|+++-.. .|+++||+|++..++. .|+|+||++
T Consensus 117 ~~~~H~K~~viD~----~~~~iGS~N~t~~s~~-----------~N~E~~lii 154 (177)
T PRK13912 117 YGIMHQKVAIIDD----KIVVLGSANWSKNAFE-----------NNYEVLLIT 154 (177)
T ss_pred ccccceeEEEEcC----CEEEEeCCCCChhHhc-----------cCCceEEEE
Confidence 3468999987532 4799999999987764 499999987
No 7
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=88.75 E-value=0.44 Score=30.36 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=20.7
Q ss_pred CCccccceeeeeeCCceEEEEeCCCCCc
Q 013748 53 FGTHHSKAMLLIYPRGVRIIVHTANLIH 80 (437)
Q Consensus 53 ~G~hHsKm~il~y~d~lRVVI~SANL~~ 80 (437)
.+.+|+|+++. |+-.++|.|+||..
T Consensus 2 ~~~~H~K~~v~---D~~~~~iGs~N~~~ 26 (28)
T smart00155 2 DGVLHTKLMIV---DDEIAYIGSANLDG 26 (28)
T ss_pred CCcEEeEEEEE---cCCEEEEeCccCCC
Confidence 36899999987 45589999999975
No 8
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=84.87 E-value=0.96 Score=45.47 Aligned_cols=42 Identities=31% Similarity=0.237 Sum_probs=30.2
Q ss_pred cceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 286 HIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 286 H~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
|.|+|.=..+...-=+|+||||||.- ||..+ +.||..|+.-+
T Consensus 82 HgKlY~f~k~g~~~~a~IGSANfS~~-~~~~~--------~~~E~~v~~D~ 123 (296)
T PF09565_consen 82 HGKLYIFSKNGKPFRAYIGSANFSQI-NGFTR--------RQYEAMVTCDP 123 (296)
T ss_pred ccEEEEEecCCCceEEEEeecccccc-ccccc--------cceeEEEecCh
Confidence 99999875554444599999999985 55433 67887766643
No 9
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=84.46 E-value=0.92 Score=40.89 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 335 (437)
...|.|+++-.. + -+++||+|++..+|. .|.|+||++.
T Consensus 112 ~~~H~K~~iiD~--~--~~~vGS~N~~~~~~~-----------~~~e~~~~~~ 149 (176)
T cd00138 112 GVLHTKLVIVDD--E--TAYIGSANLDGRSLT-----------LNSEVGVVIY 149 (176)
T ss_pred cceeeeEEEEcC--C--EEEEECCcCChhhhh-----------hhcceEEEEe
Confidence 678999988642 2 499999999999988 5889999884
No 10
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=81.88 E-value=1.1 Score=46.78 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCC
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPS 337 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~ 337 (437)
+..|.|+.+-.+ .|+++||+||+..++. .|+|++|++...
T Consensus 353 ~~lH~K~~iiD~----~~~~vGS~N~~~rS~~-----------lN~E~~~~i~d~ 392 (438)
T COG1502 353 AFLHSKVMIIDD----RTVLVGSANLDPRSLR-----------LNFEVGLVIEDP 392 (438)
T ss_pred CcceeeEEEEcC----CEEEEeCCcCCHhHHH-----------HhhhheeEEeCH
Confidence 578999988643 4699999999999876 489999999543
No 11
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=77.88 E-value=2.1 Score=45.95 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 335 (437)
-+.|.|+.+-.+ .|+++||+|++..++. .|+|+||++.
T Consensus 398 ~~~HaK~~ivD~----~~~~vGS~N~d~rS~~-----------~N~E~~~~i~ 435 (483)
T PRK01642 398 GLLHTKSVLVDD----ELALVGTVNLDMRSFW-----------LNFEITLVID 435 (483)
T ss_pred CceEeEEEEECC----CEEEeeCCcCCHhHHh-----------hhhcceEEEE
Confidence 467999987543 5899999999877762 6999999984
No 12
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=77.48 E-value=2.8 Score=35.39 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.7
Q ss_pred CccccceeeeeeCCceEEEEeCCCCCccccccc
Q 013748 54 GTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNK 86 (437)
Q Consensus 54 G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~~ 86 (437)
+.+|+|+++.- +=.++|.|+|++...|..-
T Consensus 73 ~~~H~K~~i~d---~~~~iiGS~N~t~~~~~~n 102 (126)
T PF13091_consen 73 NRLHAKFYIID---DKVAIIGSANLTSSSFRRN 102 (126)
T ss_dssp S-B--EEEEET---TTEEEEES--CSCCCSCTS
T ss_pred cCCCcceEEec---CccEEEcCCCCCcchhcCC
Confidence 68999999983 3399999999999998655
No 13
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=76.79 E-value=2.7 Score=37.77 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=29.1
Q ss_pred CCccccceeeeeeCCceEEEEeCCCCCcccccc-ccceEEee
Q 013748 53 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN-KSQGLWMQ 93 (437)
Q Consensus 53 ~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~-~tQ~vW~~ 93 (437)
.+.+|+|+||. |+=.++|.|+|+....+.. .+.++.+.
T Consensus 111 ~~~~H~K~~ii---D~~~~~vGS~N~~~~~~~~~~e~~~~~~ 149 (176)
T cd00138 111 GGVLHTKLVIV---DDETAYIGSANLDGRSLTLNSEVGVVIY 149 (176)
T ss_pred ccceeeeEEEE---cCCEEEEECCcCChhhhhhhcceEEEEe
Confidence 58999999998 4558999999999988853 33444443
No 14
>PRK11263 cardiolipin synthase 2; Provisional
Probab=76.75 E-value=2.2 Score=44.89 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
-+.|.|+.+-.+ .|+++||+||...++. .|+|++|++.-
T Consensus 286 ~~lHaK~~viD~----~~~~vGS~Nld~rS~~-----------lN~E~~~~i~d 324 (411)
T PRK11263 286 RPLHGKVALMDD----HWATVGSSNLDPLSLS-----------LNLEANLIIRD 324 (411)
T ss_pred CCceeEEEEECC----CEEEEeCCcCCHHHhh-----------hhhhcCEEEeC
Confidence 467999988643 4999999999886652 69999999853
No 15
>PRK12452 cardiolipin synthetase; Reviewed
Probab=69.24 E-value=4 Score=44.11 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
...|.|+.+-.+ .|+++||+||..-++. .|||+++++.-
T Consensus 424 ~~lHaK~~ivD~----~~a~vGS~Nld~RS~~-----------~n~E~~~~i~~ 462 (509)
T PRK12452 424 GFMHAKIVLVDD----KIATIGTANMDVRSFE-----------LNYEIISVLYE 462 (509)
T ss_pred CCeeeeEEEECC----CEEEEeCcccCHhHhh-----------hhhhccEEEEC
Confidence 467999987643 3899999999887764 39999998853
No 16
>PRK13912 nuclease NucT; Provisional
Probab=68.41 E-value=4.6 Score=37.20 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=25.7
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCcccccc
Q 013748 52 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN 85 (437)
Q Consensus 52 ~~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~ 85 (437)
.++.+|+|++|+ |+-.++|.|+|++...+..
T Consensus 116 ~~~~~H~K~~vi---D~~~~~iGS~N~t~~s~~~ 146 (177)
T PRK13912 116 YYGIMHQKVAII---DDKIVVLGSANWSKNAFEN 146 (177)
T ss_pred cccccceeEEEE---cCCEEEEeCCCCChhHhcc
Confidence 568899999998 6777999999999765543
No 17
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=67.78 E-value=6 Score=42.17 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCCCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 280 RSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 280 R~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
+...+-|.|+.+-. + .|+++||+||-.-+|. .|+|+||++.-
T Consensus 351 ~~~~~~HaK~i~vD-~---~~~~iGS~Nld~RS~~-----------ln~E~~l~i~d 392 (451)
T PRK09428 351 DGDNSYHLKGIWVD-D---RWMLLTGNNLNPRAWR-----------LDLENALLIHD 392 (451)
T ss_pred cCCCcceEEEEEEe-C---CEEEEcCCCCChhHhh-----------hcccceEEEEC
Confidence 35667899998743 2 4999999999998886 59999999853
No 18
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=55.32 E-value=8.9 Score=38.60 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred cccceeeeeeCCc-eEEEEeCCCCCcc
Q 013748 56 HHSKAMLLIYPRG-VRIIVHTANLIHV 81 (437)
Q Consensus 56 hHsKm~il~y~d~-lRVVI~SANL~~~ 81 (437)
-|+||.+..-.++ .+.+|.||||+..
T Consensus 81 ~HgKlY~f~k~g~~~~a~IGSANfS~~ 107 (296)
T PF09565_consen 81 YHGKLYIFSKNGKPFRAYIGSANFSQI 107 (296)
T ss_pred cccEEEEEecCCCceEEEEeecccccc
Confidence 5999998867766 9999999999995
No 19
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=40.54 E-value=24 Score=33.23 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCCCcceeeEeecCCceeEEEEeccccchhhhh
Q 013748 282 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWG 314 (437)
Q Consensus 282 ~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG 314 (437)
.+-.|.|-|++--...+. +.+||.|||++|--
T Consensus 117 ~~~fH~KgYiFe~~~~~t-aiiGSsNlt~sALt 148 (198)
T COG3886 117 SANFHTKGYIFEHNTGIT-AIIGSSNLTDSALT 148 (198)
T ss_pred ccccccceeEEEecceEE-EEEccchhhhhhcc
Confidence 466799999954433333 89999999999853
No 20
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=40.39 E-value=26 Score=36.91 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 013748 281 SRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 334 (437)
Q Consensus 281 ~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~ 334 (437)
++-+.|+|+.+-.... +|+||||+ -.+.-+|++ |+||++
T Consensus 166 g~GvlHtKf~vvD~kh----fylGSaNf-------DWrSlTqvk----ElGv~v 204 (456)
T KOG3603|consen 166 GGGVLHTKFWVVDIKH----FYLGSANF-------DWRSLTQVK----ELGVVV 204 (456)
T ss_pred cCceEEEEEEEEecce----EEEecccc-------chhhcccee----EeeeEE
No 21
>PHA02820 phospholipase-D-like protein; Provisional
Probab=34.34 E-value=34 Score=36.14 Aligned_cols=34 Identities=38% Similarity=0.602 Sum_probs=0.0
Q ss_pred cceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 013748 286 HIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 334 (437)
Q Consensus 286 H~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~ 334 (437)
|.|+.+-.. .++|+||+|+ .|..+. .|.|+||.+
T Consensus 115 HrK~~VIDg----~~~~iGS~Ni---d~rsl~--------~n~E~gv~i 148 (424)
T PHA02820 115 HTKFWISDN----THIYLGSANM---DWRSLT--------QVKELGIAI 148 (424)
T ss_pred eeeEEEECC----CEEEEeCCcC---Chhhhh--------hCCceEEEE
No 22
>PLN02352 phospholipase D epsilon
Probab=29.26 E-value=31 Score=39.07 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred cccceeeeeeCCceEEEEeCCCCCccccc
Q 013748 56 HHSKAMLLIYPRGVRIIVHTANLIHVDWN 84 (437)
Q Consensus 56 hHsKm~il~y~d~lRVVI~SANL~~~DW~ 84 (437)
-||||||. |.--|+|.|||+...-..
T Consensus 608 VHSKlMIV---DD~~viIGSANIN~RSM~ 633 (758)
T PLN02352 608 VHSKLMIV---DDTYILIGSANVNQRSMD 633 (758)
T ss_pred EeeeEEEE---cCcEEEEccccccccccc
Confidence 39999997 556799999999876443
No 23
>PLN03008 Phospholipase D delta
Probab=21.94 E-value=69 Score=36.85 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCCccccceeeeeeC-C--c--eEEEEeCCCCCcccccccc
Q 013748 52 SFGTHHSKAMLLIYP-R--G--VRIIVHTANLIHVDWNNKS 87 (437)
Q Consensus 52 ~~G~hHsKm~il~y~-d--~--lRVVI~SANL~~~DW~~~t 87 (437)
-+.|||-|+.|+-++ . . +==+|.==+|+..-|....
T Consensus 368 ~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRwDT~~ 408 (868)
T PLN03008 368 TLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPE 408 (868)
T ss_pred ccccccceEEEEccCCCCCccceEEEEcceeccCCccCCcC
Confidence 568999999999984 1 1 3345666677777776654
No 24
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=20.65 E-value=59 Score=37.31 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.7
Q ss_pred ccceeeeeeCCceEEEEeCCCCCcccc
Q 013748 57 HSKAMLLIYPRGVRIIVHTANLIHVDW 83 (437)
Q Consensus 57 HsKm~il~y~d~lRVVI~SANL~~~DW 83 (437)
||||||. |.=.|||.|||.-..--
T Consensus 703 HsK~mIv---DD~~vIIGSANINqRSm 726 (887)
T KOG1329|consen 703 HSKLMIV---DDEYVIIGSANINQRSM 726 (887)
T ss_pred eeeeEEe---cCCEEEEeecccchhhc
Confidence 9999996 66789999999976543
Done!