Query 013748
Match_columns 437
No_of_seqs 151 out of 339
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 1E-105 4E-110 837.6 26.0 387 1-428 61-464 (464)
2 3sq7_A Tyrosyl-DNA phosphodies 100.0 6.2E-93 2.1E-97 736.7 20.8 363 1-415 46-465 (470)
3 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 9.1E-93 3.1E-97 747.5 17.2 363 1-417 123-543 (544)
4 1byr_A Protein (endonuclease); 86.1 0.66 2.2E-05 39.6 4.3 39 283-336 91-129 (155)
5 3hsi_A Phosphatidylserine synt 82.6 0.86 3E-05 47.0 4.0 41 281-336 359-399 (458)
6 4ggj_A Mitochondrial cardiolip 82.3 1.5 5.2E-05 39.6 5.2 39 282-335 120-158 (196)
7 1byr_A Protein (endonuclease); 81.0 1.2 4E-05 37.9 3.7 40 52-94 89-129 (155)
8 1v0w_A Phospholipase D; hydrol 68.9 2.8 9.5E-05 43.4 3.4 31 52-85 162-192 (506)
9 4ggj_A Mitochondrial cardiolip 63.2 4.3 0.00015 36.5 3.1 41 51-94 118-159 (196)
10 4gel_A Mitochondrial cardiolip 61.5 5 0.00017 36.3 3.2 26 299-335 165-190 (220)
11 1v0w_A Phospholipase D; hydrol 51.2 11 0.00038 38.9 4.1 37 53-94 436-472 (506)
12 2c1l_A Restriction endonucleas 42.4 16 0.00054 34.8 3.3 39 52-93 100-138 (358)
13 3hsi_A Phosphatidylserine synt 38.2 14 0.00048 37.9 2.4 56 52-120 359-415 (458)
14 1xdp_A Polyphosphate kinase; P 36.2 30 0.001 37.4 4.8 42 283-335 431-475 (687)
15 1xdp_A Polyphosphate kinase; P 30.5 33 0.0011 37.0 3.9 43 282-336 587-629 (687)
16 2c1l_A Restriction endonucleas 27.8 51 0.0017 31.4 4.1 58 263-334 82-141 (358)
17 3mlq_E Transcription-repair co 20.8 69 0.0024 24.0 3.0 24 56-79 30-53 (71)
18 1jy1_A TDP1, tyrosyl-DNA phosp 20.7 61 0.0021 33.2 3.5 34 283-317 116-149 (464)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=1.2e-105 Score=837.59 Aligned_cols=387 Identities=42% Similarity=0.795 Sum_probs=319.8
Q ss_pred CcchhhhcccCCC-CCCCCeEEEEeCCCCchhhhh--hhcCCCceEEEcCCCCCCCCccccceeeeeeCCceEEEEeCCC
Q 013748 1 MVDIDWLLPACPV-LAKIPHVLVIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTAN 77 (437)
Q Consensus 1 m~Dl~WLl~~~~~-~~~~~~i~iv~g~~~~~~~~~--~~~~~~n~~~~~p~mp~~~G~hHsKm~il~y~d~lRVVI~SAN 77 (437)
|+|++|||++|+. .+++| |+||||++++....+ .....+|+++|+|+||.+|||||||||||+|+|||||||||||
T Consensus 61 ~~D~~WLl~~~~~~~~~~~-v~iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TAN 139 (464)
T 1jy1_A 61 CFDVDWLVKQYPPEFRKKP-ILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSN 139 (464)
T ss_dssp CBCHHHHHHHSCGGGTTSC-EEEEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCC
T ss_pred HHhHHHHHhhCcccccCCc-EEEEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCC
Confidence 8999999999984 45664 888999764322222 2245679999999999999999999999999999999999999
Q ss_pred CCccccccccceEEeec-ccCCCCCC---CCCCCCcHHHHHHHHHhcCCCcccccCCCCCCccccccccccccccccceE
Q 013748 78 LIHVDWNNKSQGLWMQD-FPLKDQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVR 153 (437)
Q Consensus 78 L~~~DW~~~tQ~vW~~d-fP~~~~~~---~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~~v~ 153 (437)
|+++||+++||+||+|| ||+++..+ .+++++|++||++||++|+.+.... +++.|++||||+++|+
T Consensus 140 L~~~DW~~~tQ~vW~sd~lP~~~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~ 209 (464)
T 1jy1_A 140 LIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVY 209 (464)
T ss_dssp BSGGGGTSSBCEEEECCCBCBCCTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSE
T ss_pred CChhHhccccceEEecccCcCCCccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcE
Confidence 99999999999999999 79865432 3688999999999999999764322 2588999999999999
Q ss_pred EEEccCCCCCCCcchhhcHHHHHHHHHhccccC-CCcccCeEEEecCCCCCc---hHHH-HHHHHhccCCCCCCCCC-CC
Q 013748 154 LIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK-GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LG 227 (437)
Q Consensus 154 LV~SvPG~h~g~~~~~~G~~~L~~~l~~~~~~~-~~~~~~i~~Q~SSiGsl~---~~wl-~~f~~sl~~~~~~~~~~-~~ 227 (437)
||+||||+|.|.++.+|||+||+++|++++... ..++++|+||+||||+++ .+|| ++|..+|.+...+.+.+ ..
T Consensus 210 LVaSvPG~h~~~~~~~~G~~~L~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~ 289 (464)
T 1jy1_A 210 LIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKS 289 (464)
T ss_dssp EEEECSEEEEGGGGGGSHHHHHHHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------
T ss_pred EEEeCCcCCcCCcchhhhHHHHHHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccC
Confidence 999999999999999999999999999987642 235789999999999997 4899 68999997753222111 13
Q ss_pred CCCcEEEccCchhhhcCcccccCCccccCCCccch-hHHHHHHHhhhcCCCCCCCCCCCcceeeEeecC--CceeEEEEe
Q 013748 228 IGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLT 304 (437)
Q Consensus 228 ~~~~~iifPT~~~V~~S~~G~~~gg~i~~~~~~~~-~~~l~~~~~~w~~~~~~R~~~~PH~K~y~r~~~--~~~~W~llt 304 (437)
.++++|||||+||||+|.+||.+|||||++.++++ +.|++++||+|+++.++|+++|||||+|+|++. ..++|+|||
T Consensus 290 ~~~~~iifPT~e~Vr~S~~G~~~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~pHiKty~r~~~~~~~~~W~llt 369 (464)
T 1jy1_A 290 SVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVT 369 (464)
T ss_dssp CCCEEEECCBHHHHHTSSSCGGGGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEECTTSSEEEEEEEE
T ss_pred CCceEEEcCCHHHHHhcccccCCcceeeccchhhhhhhhhHHHHHHhccCccCCCCcCCceeeEEecCCCCCeecEEEEc
Confidence 46799999999999999999999999999866554 469999999999999999999999999999985 479999999
Q ss_pred ccccchhhhhccccCCceeeeeeeeeeeEEcCCcccCCCccccccCCCCcccccCCccchhhccceeeeeecCCCCCCCC
Q 013748 305 SANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGA 384 (437)
Q Consensus 305 SaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (437)
|||||+||||+++++++||+||||||||||+|..+++. .++... +.. +. .
T Consensus 370 SaNLSkaAWG~~~k~~~~l~I~nyElGVl~~P~~~~~~-~~~~~~--------------------~~~------~~---~ 419 (464)
T 1jy1_A 370 SANLSKAAWGALEKNGTQLMIRSYELGVLFLPSALGLD-SFKVKQ--------------------KFF------AG---S 419 (464)
T ss_dssp SCCBSHHHHCEEETTTTEEEECSBEEEEEECGGGGTCS-CEEEC------------------------------------
T ss_pred cccCCHHHhCccccCCCceeEeeeeeeEEEeccccccc-ccccCc--------------------ccc------cc---c
Confidence 99999999999999999999999999999999876432 111100 000 00 0
Q ss_pred CCcccccccccCCCCCCCCCCCCCceecCCCCCc-cCCCCCCccc
Q 013748 385 SSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTKK-DVYGQVWPRH 428 (437)
Q Consensus 385 ~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~y~~~-D~~G~~w~~~ 428 (437)
....+.|||||++|++||+++|+||+++++|.+| |++|++|++.
T Consensus 420 ~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~~~~~~D~~G~~w~p~ 464 (464)
T 1jy1_A 420 QEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMWVPS 464 (464)
T ss_dssp ----CEECCSSCSSCCBCCTTCCBCCTTSCBCSSCCTTSCCBCCC
T ss_pred cCcccceeecCCCCCcCCCCCCCCeeCCCCCCCcccCCcCcCCCC
Confidence 1224689999999999999999999999999997 9999999873
No 2
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=6.2e-93 Score=736.74 Aligned_cols=363 Identities=20% Similarity=0.305 Sum_probs=285.4
Q ss_pred CcchhhhcccCCCCCCCCeEEEEeCCCCc---hh----hhhhhcCCCceEEEcCCCCCCCCccccceeeeeeCCc-eEEE
Q 013748 1 MVDIDWLLPACPVLAKIPHVLVIHGESDG---TL----EHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRII 72 (437)
Q Consensus 1 m~Dl~WLl~~~~~~~~~~~i~iv~g~~~~---~~----~~~~~~~~~n~~~~~p~mp~~~G~hHsKm~il~y~d~-lRVV 72 (437)
|+|++|||++|+.. ++.|+||+++++. +. +...+ ..+|++++.|+|| +|||||||||||+|+|| ||||
T Consensus 46 ~~Di~WLl~~~~~~--~~~v~iv~~~g~~~~~~~~~~~~~~~~-~~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVv 121 (470)
T 3sq7_A 46 QYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAMDATLAV-ILKKVKLIEITMP-PFASHHTKLIINFYDNGECKIF 121 (470)
T ss_dssp CEEHHHHHTTSCTT--CCEEEEEEETTSEECCCGGGCCHHHHH-HHTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEE
T ss_pred hhcHHHHHhhCccc--cCceEEEEeCCcccccchhhhhHHHHh-hcCCceEEecCCC-CcCCccceeEEEEecCCCEEEE
Confidence 89999999999864 3467777754321 11 11222 2358999999999 99999999999999988 9999
Q ss_pred EeCCCCCccccccccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhcCCCcccccCCCCCCcccccccccccccccc-c
Q 013748 73 VHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-A 151 (437)
Q Consensus 73 I~SANL~~~DW~~~tQ~vW~~dfP~~~~~~~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~-~ 151 (437)
||||||+++||+..||+||. +|+++......+++|++||++||++|+.+.+. ..+++.|++||||++ +
T Consensus 122 I~TANl~~~Dw~~~tq~~W~--~P~l~~~~~~~~s~Fk~dL~~yL~~y~~~~l~---------~~~i~~l~~~DFS~~~~ 190 (470)
T 3sq7_A 122 LPSNNFTSMETNLPQQVCWC--SPLLKIGKEGLPVPFKRSLIEYLNSYHLKDID---------ELITKSVEEVNFAPLSE 190 (470)
T ss_dssp EESSCBSHHHHHSSBCEEEE--CCCEEECCCCSCCHHHHHHHHHHHTTCCHHHH---------HHTHHHHHTEECGGGTT
T ss_pred EecCCCChhhhcccceEEEE--ccCCcCCCCCCCCccHHHHHHHHHHhCCchhH---------HHHHHHHHhCCCCCCCc
Confidence 99999999999999999995 45543222345679999999999999987531 112588999999999 5
Q ss_pred eEEEEccCCCCCCCcchhhcHHHHHHHHHhccccC--CCcccCeEEEecCCCC-Cch----HHHHHHH-HhccCCCCC--
Q 013748 152 VRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK--GFKKSPLVYQFSSLGS-LDE----KWMAELS-SSMSSGFSE-- 221 (437)
Q Consensus 152 v~LV~SvPG~h~g~~~~~~G~~~L~~~l~~~~~~~--~~~~~~i~~Q~SSiGs-l~~----~wl~~f~-~sl~~~~~~-- 221 (437)
|+||+||||+|. +|||+||+++|+++.... ..++++|+||+||||+ ++. +||++.+ .+|++....
T Consensus 191 v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~ 265 (470)
T 3sq7_A 191 LEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPA 265 (470)
T ss_dssp CEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCCCSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-
T ss_pred EEEEEecCCCCc-----cchHHHHHHHHHHhccCCCcccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCccc
Confidence 999999999984 699999999999988642 2357899999999999 984 5787744 445432111
Q ss_pred ----CC----CC----------CCCCCcEEEccCchhhhcCcccccCCccccCCCccch--hHHHH---HHHhhhcCC--
Q 013748 222 ----DK----TP----------LGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVD--KDFLK---KYWAKWKAS-- 276 (437)
Q Consensus 222 ----~~----~~----------~~~~~~~iifPT~~~V~~S~~G~~~gg~i~~~~~~~~--~~~l~---~~~~~w~~~-- 276 (437)
.+ .+ ....+++|||||+||||+|.+||.+||||||+.++.. +.|++ ++||||+++
T Consensus 266 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTveeVr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~ 345 (470)
T 3sq7_A 266 KDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMV 345 (470)
T ss_dssp ----------CCCHHHHHHHHHHTTEEEEEECCBTGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTS
T ss_pred cccccccccccCCccchhhhhccCCCCeEEEcCCHHHHhcCccccccCceeeecccchHHHHHHHhcccceEecccCcCC
Confidence 01 01 0134689999999999999999999999999965553 36877 899999886
Q ss_pred CCCCCCCCCcceeeEeecC------------CceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcccCCCc
Q 013748 277 HTGRSRAMPHIKTFARYNG------------QKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCG 344 (437)
Q Consensus 277 ~~~R~~~~PH~K~y~r~~~------------~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~~~~~~~~ 344 (437)
..+|++++||||||+|++. +.++|||||||||||||||++++ +||||||||||+|.++.+...
T Consensus 346 ~~~R~~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k-----~irsYElGVL~~p~~~~~~~~ 420 (470)
T 3sq7_A 346 TRRRGTTPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR-----KPRNYEAGVLYHSRRLANTRK 420 (470)
T ss_dssp CTTTTTCCBCCEEEEEEEC--------CCTTSEESEEEEESCCBSHHHHCCSSS-----CCSSBEEEEEEEGGGSSSSCC
T ss_pred CCCCCCcCCceEEEEEecccccccccccCCCceeeEEEEecccCCHHHhhhhcc-----CCcceeeeEEEccccccccce
Confidence 5689999999999999874 57999999999999999999987 689999999999998876655
Q ss_pred cccccCCCCcccccCCccchhhccceeeeeecCCCCCCCCCCcccccccccCCCCCCCCCC-CCCceecCCC
Q 013748 345 FSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSE-DVPWSWDKRY 415 (437)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~-D~Pw~~~~~y 415 (437)
+.|.++.+.+.+ .+ ...+.|||||+||++||+++ |+|||....|
T Consensus 421 ~~~~~~~~~~~~-----------------------~~----~~~~~~~vPf~lP~~~Y~~~~D~p~~~~~~~ 465 (470)
T 3sq7_A 421 VTCRTFTRDRRG-----------------------CA----GNPTHVAVPFTLPVIPYDLAEDECFCLALEH 465 (470)
T ss_dssp EEEEEGGGC----------------------------------CCSEEESSCSSCEECCTTTCCBCCCCCTT
T ss_pred eecccccccccc-----------------------cc----CCCceeeecCCCCCccCCCCCCcceeeehhh
Confidence 666665432110 00 12467999999999999999 9999987654
No 3
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=9.1e-93 Score=747.55 Aligned_cols=363 Identities=20% Similarity=0.277 Sum_probs=276.1
Q ss_pred CcchhhhcccCCCCCCCCeEEEEeCCCCc---h-hh--hhhhcCCCceEEEcCCCCCCCCccccceeeeeeCCc-eEEEE
Q 013748 1 MVDIDWLLPACPVLAKIPHVLVIHGESDG---T-LE--HMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIV 73 (437)
Q Consensus 1 m~Dl~WLl~~~~~~~~~~~i~iv~g~~~~---~-~~--~~~~~~~~n~~~~~p~mp~~~G~hHsKm~il~y~d~-lRVVI 73 (437)
|+|++|||++|+.. +++|+||||+... . .. ...+...+||++|+|+||. |||||||||||+|+|| |||||
T Consensus 123 ~~Di~WLl~~~~~~--~~~v~iv~g~~~~~~~~r~~~~~~~~~~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI 199 (544)
T 1q32_A 123 QYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAMDATLAVILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFL 199 (544)
T ss_dssp CEEHHHHHTTSCTT--CCEEEEEEETTCEECCCGGGCCHHHHHHHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEE
T ss_pred HHhHHHHHhhCccc--CCcEEEEecCCcCCchhhhhhhHHhhccCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEE
Confidence 89999999999853 3378899987531 1 11 1111225699999999998 9999999999999998 99999
Q ss_pred eCCCCCccccccccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhcCCCcccccCCCCCCcccccccccccccccc-ce
Q 013748 74 HTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AV 152 (437)
Q Consensus 74 ~SANL~~~DW~~~tQ~vW~~dfP~~~~~~~~~~~~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~L~~yDFS~~-~v 152 (437)
|||||+++||+++||+||+|||+.+. +.+.+++|+.||++||++|+.+.+..+ | ++.|++||||.+ +|
T Consensus 200 ~TANLi~~DW~~~tQ~vW~sp~lp~~--s~g~~~~Fk~dL~~yL~ay~~~~l~~~--------i-i~~l~~~DFS~~~~v 268 (544)
T 1q32_A 200 PSNNFTSMETNLPQQVCWCSPLLKIG--KEGLPVPFKRSLIEYLNSYHLKDIDEL--------I-TKSVEEVNFAPLSEL 268 (544)
T ss_dssp ESSCBSHHHHHSSBCEEEECCCEEEC--CCSSCCHHHHHHHHHHHTTCCHHHHHH--------T-HHHHHTEECGGGTTC
T ss_pred eCCCCChHHhccccceEEECCccccc--CCCCCCchHHHHHHHHHHcCCcccchH--------H-HHHHHhcCcccCCce
Confidence 99999999999999999999953322 234579999999999999998643221 1 478999999999 99
Q ss_pred EEEEccCCCCCCCcchhhcHHHHHHHHHhcc--ccCCCcccCeEEEecCCCC-Cc-hHHHHHHHHhccC---C-----CC
Q 013748 153 RLIASVPGYHTGSSLKKWGHMKLRTVLQECT--FEKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS---G-----FS 220 (437)
Q Consensus 153 ~LV~SvPG~h~g~~~~~~G~~~L~~~l~~~~--~~~~~~~~~i~~Q~SSiGs-l~-~~wl~~f~~sl~~---~-----~~ 220 (437)
+||+||||+|.| |||++|+++|++++ +....++++|+||+||||+ ++ ++||++|..+|.+ | ..
T Consensus 269 ~lV~SvPG~h~~-----~G~~~L~~~L~~~~~~~~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~ 343 (544)
T 1q32_A 269 EFVYSTPSKFQS-----SGLLSFYNKLEKLSAGTSASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAK 343 (544)
T ss_dssp EEEEECCCTTSC-----CHHHHHHHHHHHTC------CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC--
T ss_pred EEEEecCCccCC-----ccHHHHHHHHHHhhccCCCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCcc
Confidence 999999999998 59999999999987 3333346899999999999 66 5887766654432 2 11
Q ss_pred C-CCCC---------------CCCCCcEEEccCchhhhcCcccccCCccccCCCcc---chhHHHHHHHhhhcC----CC
Q 013748 221 E-DKTP---------------LGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKN---VDKDFLKKYWAKWKA----SH 277 (437)
Q Consensus 221 ~-~~~~---------------~~~~~~~iifPT~~~V~~S~~G~~~gg~i~~~~~~---~~~~~l~~~~~~w~~----~~ 277 (437)
. ...+ ....+++|||||+++||+|.+||.+|||||++.+. ..++|+++++|+|.. ..
T Consensus 344 ~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~ 423 (544)
T 1q32_A 344 DTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVT 423 (544)
T ss_dssp ---------CCCHHHHHHHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSC
T ss_pred cccccccccccccchhcccccccCCCceEEcCCHHHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCcccc
Confidence 1 1000 01357899999999999999999999999986432 235799999999987 57
Q ss_pred CCCCCCCCcceeeEeec------------CCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcc-cCCC-
Q 013748 278 TGRSRAMPHIKTFARYN------------GQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAK-RHGC- 343 (437)
Q Consensus 278 ~~R~~~~PH~K~y~r~~------------~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~~~-~~~~- 343 (437)
++|++||||||+|+|++ .+.++|+||||||||+||||++++ +|+|||||||| |..+ .+..
T Consensus 424 s~R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k-----~irnyElGVL~-P~~~~~~~~~ 497 (544)
T 1q32_A 424 RRRGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR-----KPRNYEAGVLY-HSRRLANTRK 497 (544)
T ss_dssp TTTTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSS-----CCSSBEEEEEE-EGGGC---CC
T ss_pred CCCCCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhc-----cccceEeEEEe-cccccccccc
Confidence 79999999999999986 257999999999999999999986 69999999999 6542 1111
Q ss_pred -ccccccCCCCcccccCCccchhhccceeeeeecCCCCCCCCCCcccccccccCCCCCCCCCCCCCceecCCCCC
Q 013748 344 -GFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTK 417 (437)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~y~~ 417 (437)
.++|... +.- +.....+.+||||+||++||+++|+||+++.+|++
T Consensus 498 ~~~p~~~~----------------------------d~~-~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~~ 543 (544)
T 1q32_A 498 VTCRTFTR----------------------------DRR-GCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHEN 543 (544)
T ss_dssp EEEEEGGG----------------------------C--------CCSEEESSCSSCEECCTTTCCBCCC-----
T ss_pred eecccccc----------------------------cCc-ccccCcccccccCCCCcccCCCCCCCccccccccc
Confidence 1111110 000 00012367999999999999999999999999974
No 4
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=86.07 E-value=0.66 Score=39.58 Aligned_cols=39 Identities=28% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
...|.|+++-.. .++++||+|++..+.. .|.|++|++..
T Consensus 91 ~~~H~K~~iiD~----~~~~iGS~N~~~~~~~-----------~n~E~~~~i~~ 129 (155)
T 1byr_A 91 PIQHDKVIIVDN----VTVETGSFNFTKAAET-----------KNSENAVVIWN 129 (155)
T ss_dssp SCCCCCEEEETT----TEEEEESCCBSHHHHH-----------TSCEEEEEEES
T ss_pred ccccceEEEECC----CEEEEECCCCCccccc-----------cCcccEEEEcC
Confidence 468999988632 4799999999987543 48899998843
No 5
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=82.58 E-value=0.86 Score=47.01 Aligned_cols=41 Identities=32% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 281 SRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 281 ~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
.+...|.|+++-.+ .|+++||+||...++. .|+|+||++.-
T Consensus 359 ~~~~lHaK~~vvD~----~~~~vGS~N~d~RS~~-----------lN~E~~~~i~~ 399 (458)
T 3hsi_A 359 GDNTYHLKGVWVDD----RYILLTGNNLNPRAWR-----------LDAENGLLIYD 399 (458)
T ss_dssp TTBEECCCEEEETT----TEEEEECCCCSHHHHH-----------TCEEEEEEEEC
T ss_pred CCCceeEEEEEECC----eEEEecCCCCCcchhh-----------hCceeEEEEeC
Confidence 46778999988643 4899999999988774 59999999953
No 6
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=82.28 E-value=1.5 Score=39.62 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=30.5
Q ss_pred CCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 013748 282 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335 (437)
Q Consensus 282 ~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 335 (437)
....|.|+++-.. .++++||+|+|..|.. .|+|.++++.
T Consensus 120 ~~~~H~K~~viD~----~~~~~GS~N~t~~~~~-----------~n~E~~~~i~ 158 (196)
T 4ggj_A 120 LGYMHHKFAIVDK----KVLITGSLNWTTQAIQ-----------NNRENVLIME 158 (196)
T ss_dssp SSCCCCEEEEETT----TEEEEESCCBCHHHHH-----------HCCEEEEEEC
T ss_pred cccccCcEEEEcc----eEEEecCccCChhhhc-----------ccceeEEEEE
Confidence 3567999987632 3699999999998864 4899999873
No 7
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=80.96 E-value=1.2 Score=37.94 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCccccc-cccceEEeec
Q 013748 52 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 94 (437)
Q Consensus 52 ~~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~-~~tQ~vW~~d 94 (437)
+.+.+|+|++|. |+-.++|.|+|++..... +.+.++.+.+
T Consensus 89 ~~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 89 NFPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred CcccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 357899999998 677899999999976432 3445555543
No 8
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=68.86 E-value=2.8 Score=43.43 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCcccccc
Q 013748 52 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN 85 (437)
Q Consensus 52 ~~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~ 85 (437)
+++.||.|++|+ ||-.++|.++|++..+|-.
T Consensus 162 ~~~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~~ 192 (506)
T 1v0w_A 162 AFSWNHSKILVV---DGQSALTGGINSWKDDYLD 192 (506)
T ss_dssp TTBCBCCCEEEE---TTTEEEEESCCCCHHHHTS
T ss_pred ccccceeeEEEE---CCcEEEeeccccCcccccc
Confidence 578999999999 8888999999998655543
No 9
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=63.22 E-value=4.3 Score=36.54 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=30.3
Q ss_pred CCCCccccceeeeeeCCceEEEEeCCCCCccccc-cccceEEeec
Q 013748 51 ISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 94 (437)
Q Consensus 51 ~~~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~-~~tQ~vW~~d 94 (437)
.+.|.+|.|++|+ |+-.++|.|+|++..-.. +.+.++.+.|
T Consensus 118 ~~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~~ 159 (196)
T 4ggj_A 118 QDLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIMED 159 (196)
T ss_dssp CSSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEECC
T ss_pred cccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEEC
Confidence 3568899999999 787899999999876543 3345555543
No 10
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=61.49 E-value=5 Score=36.27 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.6
Q ss_pred eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 013748 299 AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335 (437)
Q Consensus 299 ~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 335 (437)
.++++||+|++..|-. .|||.++++.
T Consensus 165 ~~v~~GS~N~t~~s~~-----------~N~E~~~vi~ 190 (220)
T 4gel_A 165 SIVISGSVNWTALGLG-----------GNWENCIITA 190 (220)
T ss_dssp CEEEEESCCBSHHHHH-----------TSBEEEEEEC
T ss_pred ceEEecCccccccccc-----------cCceEEEEEE
Confidence 5799999999988753 5899999883
No 11
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=51.21 E-value=11 Score=38.86 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.9
Q ss_pred CCccccceeeeeeCCceEEEEeCCCCCccccccccceEEeec
Q 013748 53 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 94 (437)
Q Consensus 53 ~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~~tQ~vW~~d 94 (437)
-+..|+|+||. |+-.++|.|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 35899999998 777899999999887774 55666664
No 12
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=42.44 E-value=16 Score=34.80 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=32.1
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCccccccccceEEee
Q 013748 52 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ 93 (437)
Q Consensus 52 ~~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~~tQ~vW~~ 93 (437)
..-.+|+|..+.+-.++.-+||.|+||+..- +.|-|=++
T Consensus 100 rkRi~HaK~Yg~~~n~g~~LIV~SgNfT~pG---msQNvE~s 138 (358)
T 2c1l_A 100 RKRILHAKLYGTSNNLGESLVVSSGNFTGPG---MSQNIEAS 138 (358)
T ss_dssp CSSCBCCEEEEEEETTEEEEEEESCCBSTTT---TTTSBEEE
T ss_pred eeeecchhhhcccCCCceEEEEecCCccccc---cccceeEE
Confidence 5667899999999999999999999999875 45544444
No 13
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=38.24 E-value=14 Score=37.89 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=39.2
Q ss_pred CCCccccceeeeeeCCceEEEEeCCCCCcccccc-ccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhc
Q 013748 52 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN-KSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTL 120 (437)
Q Consensus 52 ~~G~hHsKm~il~y~d~lRVVI~SANL~~~DW~~-~tQ~vW~~dfP~~~~~~~~~~~~F~~dL~~yL~ay 120 (437)
..|.+|+|.+++ |+-.++|.|+||.+.-+.. .+.++.+.+=. ..|..+|.+.+..+
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~----------~~l~~~l~~~f~~~ 415 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYDPQ----------QQLLAQVEKEQNQI 415 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEECTT----------CSSHHHHHHHHHHH
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeCCc----------HHHHHHHHHHHHHH
Confidence 458999999998 6778999999999876643 45677776421 23566665555443
No 14
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=36.22 E-value=30 Score=37.35 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCCcceeeEeec--CCce-eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 013748 283 AMPHIKTFARYN--GQKL-AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 335 (437)
Q Consensus 283 ~~PH~K~y~r~~--~~~~-~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 335 (437)
.-.|.|+.+-.. ++.+ .|+++||+|+....++ .|.|+|+++.
T Consensus 431 ~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~-----------~n~D~~l~i~ 475 (687)
T 1xdp_A 431 LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR-----------LYTDYSLLTA 475 (687)
T ss_dssp CEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG-----------TEEEEEEEEC
T ss_pred ccccceEEEEEeccCCeEEEEEEEeCCcCCcchhh-----------hcceEEEEEe
Confidence 337999977543 3455 8999999999876543 3689999885
No 15
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=30.50 E-value=33 Score=37.04 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 013748 282 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 336 (437)
Q Consensus 282 ~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 336 (437)
+.+-|.|+|.--+++ -.|+|+||||+..-.- -+|+|+++.+.-
T Consensus 587 r~Leh~rI~~f~~~d-d~~~~IGSAN~d~Rsl-----------~~n~Ev~~~I~d 629 (687)
T 1xdp_A 587 RYLEHDRVYIFENGG-DKKVYLSSADWMTRNI-----------DYRIEVATPLLD 629 (687)
T ss_dssp SSEECCCEEEECGGG-SCEEEEESCCBSHHHH-----------HSEEEEEEECCS
T ss_pred HHhhCCeEEEEcCCC-CCEEEEEcCccchhhh-----------hhheeeeEEecC
Confidence 456688987654432 2599999999975432 269999998853
No 16
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=27.82 E-value=51 Score=31.41 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=38.0
Q ss_pred hHHHHHHHhhhcCC--CCCCCCCCCcceeeEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 013748 263 KDFLKKYWAKWKAS--HTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 334 (437)
Q Consensus 263 ~~~l~~~~~~w~~~--~~~R~~~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~ 334 (437)
|+-+...+. |..+ ... +..+.|-|.|.-.+.+.. =.++||.||+-.- +..|-||.|++
T Consensus 82 KQavEElL~-cGvev~IiN-rkRi~HaK~Yg~~~n~g~-~LIV~SgNfT~pG-----------msQNvE~slll 141 (358)
T 2c1l_A 82 RQVVEELLN-RGVEVHIIN-RKRILHAKLYGTSNNLGE-SLVVSSGNFTGPG-----------MSQNIEASLLL 141 (358)
T ss_dssp HHHHHHHHH-TTCEEEEEE-CSSCBCCEEEEEEETTEE-EEEEESCCBSTTT-----------TTTSBEEEEEE
T ss_pred HHHHHHHHh-cCCceEEee-eeeecchhhhcccCCCce-EEEEecCCccccc-----------cccceeEEEEE
Confidence 445555554 4332 122 346789999988776544 3789999997431 34789999887
No 17
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=20.83 E-value=69 Score=23.99 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.8
Q ss_pred cccceeeeeeCCceEEEEeCCCCC
Q 013748 56 HHSKAMLLIYPRGVRIIVHTANLI 79 (437)
Q Consensus 56 hHsKm~il~y~d~lRVVI~SANL~ 79 (437)
.+-.+++|.|.++.++.||..|+-
T Consensus 30 ~~~ey~~l~y~~~~~l~VPv~~~~ 53 (71)
T 3mlq_E 30 VKRDYLVLRYKGEGKLYLPVEQLP 53 (71)
T ss_dssp EEEEEEEEEETTTEEEEEESSSCC
T ss_pred eeEEEEEEEECCCCEEEEEhhhhc
Confidence 456788999999999999999985
No 18
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=20.68 E-value=61 Score=33.22 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=26.5
Q ss_pred CCCcceeeEeecCCceeEEEEeccccchhhhhccc
Q 013748 283 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQ 317 (437)
Q Consensus 283 ~~PH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~ 317 (437)
...|+|+++-.-.+.+ -+.+.||||...-||...
T Consensus 116 GthHsKmmiL~y~~gl-RVVI~TANL~~~DW~~~t 149 (464)
T 1jy1_A 116 GTHHTKMMLLLYEEGL-RVVIHTSNLIHADWHQKT 149 (464)
T ss_dssp CCBCCCEEEEEESSCE-EEEEECCCBSGGGGTSSB
T ss_pred cccchhhheeecCCce-EEEEeCCCCChhHhcccc
Confidence 3669999765544444 599999999999999854
Done!