BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013749
(437 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359493143|ref|XP_002264763.2| PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform 2
[Vitis vinifera]
Length = 432
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/432 (91%), Positives = 415/432 (96%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSA NA+QF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAANAMQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
YTNVQP+IRGRNVYVQFSSHQELTT++QNAQGRGDEPNRILLVTIHH+LYPITVEVLHQV
Sbjct: 61 YTNVQPSIRGRNVYVQFSSHQELTTVDQNAQGRGDEPNRILLVTIHHLLYPITVEVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQYQ R SAV AR+SLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNNERSRDFTNP+LP+EQKGR SQSGY +AGV FPQM NA+AIAAAFGGGLPPGI+G
Sbjct: 181 QVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGVGFPQMPNASAIAAAFGGGLPPGISG 240
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 241 TNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 300
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKRLEVNFSK+ NIT GADTHEYMNS+LNRFNRNAAKNYRYCCSPTKMIH+S
Sbjct: 301 FLKGAMLFGKRLEVNFSKYSNITTGADTHEYMNSSLNRFNRNAAKNYRYCCSPTKMIHVS 360
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TL QD+TEEEIVSHLEEHG+IVNTKLFEMNGKKQALV+FE EEQATEALVCKHA+ LGG
Sbjct: 361 TLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQATEALVCKHATPLGGL 420
Query: 421 IIRISFSQLQSI 432
IRISFSQLQ I
Sbjct: 421 AIRISFSQLQGI 432
>gi|296081200|emb|CBI18226.3| unnamed protein product [Vitis vinifera]
Length = 443
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/443 (88%), Positives = 415/443 (93%), Gaps = 11/443 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSA NA+QF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAANAMQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
YTNVQP+IRGRNVYVQFSSHQELTT++QNAQGRGDEPNRILLVTIHH+LYPITVEVLHQV
Sbjct: 61 YTNVQPSIRGRNVYVQFSSHQELTTVDQNAQGRGDEPNRILLVTIHHLLYPITVEVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQYQ R SAV AR+SLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG-----------VAFPQMANAAAIAAA 229
QVNYNNERSRDFTNP+LP+EQKGR SQSGY +AG V FPQM NA+AIAAA
Sbjct: 181 QVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGGMYALQPGARTVGFPQMPNASAIAAA 240
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
FGGGLPPGI+GTNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALVQM
Sbjct: 241 FGGGLPPGISGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQM 300
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRY 349
GDGFQAELAVHFLKGA+LFGKRLEVNFSK+ NIT GADTHEYMNS+LNRFNRNAAKNYRY
Sbjct: 301 GDGFQAELAVHFLKGAMLFGKRLEVNFSKYSNITTGADTHEYMNSSLNRFNRNAAKNYRY 360
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
CCSPTKMIH+STL QD+TEEEIVSHLEEHG+IVNTKLFEMNGKKQALV+FE EEQATEAL
Sbjct: 361 CCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQATEAL 420
Query: 410 VCKHASSLGGSIIRISFSQLQSI 432
VCKHA+ LGG IRISFSQLQ I
Sbjct: 421 VCKHATPLGGLAIRISFSQLQGI 443
>gi|359493141|ref|XP_002264689.2| PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform 1
[Vitis vinifera]
Length = 445
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/445 (88%), Positives = 415/445 (93%), Gaps = 13/445 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSA NA+QF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAANAMQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE--PNRILLVTIHHMLYPITVEVLH 118
YTNVQP+IRGRNVYVQFSSHQELTT++QNAQGRGDE PNRILLVTIHH+LYPITVEVLH
Sbjct: 61 YTNVQPSIRGRNVYVQFSSHQELTTVDQNAQGRGDEVSPNRILLVTIHHLLYPITVEVLH 120
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178
QVFSPHGFVEKIVTFQKSAGFQALIQYQ R SAV AR+SLQGRNIYDGCCQLDIQFSNLD
Sbjct: 121 QVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYDGCCQLDIQFSNLD 180
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG-----------VAFPQMANAAAIA 227
ELQVNYNNERSRDFTNP+LP+EQKGR SQSGY +AG V FPQM NA+AIA
Sbjct: 181 ELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGGMYALQPGARTVGFPQMPNASAIA 240
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGGGLPPGI+GTNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGISGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALV 300
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
QMGDGFQAELAVHFLKGA+LFGKRLEVNFSK+ NIT GADTHEYMNS+LNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKYSNITTGADTHEYMNSSLNRFNRNAAKNY 360
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
RYCCSPTKMIH+STL QD+TEEEIVSHLEEHG+IVNTKLFEMNGKKQALV+FE EEQATE
Sbjct: 361 RYCCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQATE 420
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALVCKHA+ LGG IRISFSQLQ I
Sbjct: 421 ALVCKHATPLGGLAIRISFSQLQGI 445
>gi|255566638|ref|XP_002524303.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223536394|gb|EEF38043.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 437
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/438 (89%), Positives = 414/438 (94%), Gaps = 3/438 (0%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD+PSAINALQF
Sbjct: 1 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAINALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHML--YPITVEVLH 118
Y NVQPTIRGRNVYVQFSSHQELTTM+QN+QGR DEP +L V I VEVLH
Sbjct: 61 YGNVQPTIRGRNVYVQFSSHQELTTMDQNSQGRADEP-FVLAVRFKSNFDGINIIVEVLH 119
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178
QVFSPHGFVEKIVTFQKSAGFQALIQYQLR SAV AR++LQGRNIYDGCCQLDIQFSNLD
Sbjct: 120 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRQSAVAARTALQGRNIYDGCCQLDIQFSNLD 179
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGI 238
ELQVNYNN+RSRDFTNP+LPAEQKGR SQ+GY +AGVA+PQMANAAAIAAAFGGGLPPGI
Sbjct: 180 ELQVNYNNDRSRDFTNPHLPAEQKGRSSQAGYGDAGVAYPQMANAAAIAAAFGGGLPPGI 239
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
+GTNDRCTVLVSNLN D+IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELA
Sbjct: 240 SGTNDRCTVLVSNLNPDKIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELA 299
Query: 299 VHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
VHFLKGA+LFGKRLEVNFSKHPNITQGADTHEY+NSNLNRFNRNAAKNYRYCCSPTKMIH
Sbjct: 300 VHFLKGAVLFGKRLEVNFSKHPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIH 359
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
LSTLPQD+TEEEIVSHLEEHG+IVNTKLFEMNGKKQALVLFETEEQATEALVCKHA S+
Sbjct: 360 LSTLPQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAISVA 419
Query: 419 GSIIRISFSQLQSIRENS 436
GSIIRISFSQLQSIRE+S
Sbjct: 420 GSIIRISFSQLQSIRESS 437
>gi|449503770|ref|XP_004162168.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Cucumis sativus]
Length = 432
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/432 (88%), Positives = 411/432 (95%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSA+NALQF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALMQMQDVPSAVNALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+ N+QP+IRGRNVYVQFSSHQELTT +QNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61 FANLQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
F PHGFVEKIVTFQKSAGFQALIQYQ R AV AR++LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNNERSRDFTNP+LP+E KGR SQ GY + G +PQMANAAA+AAAFGGGLPPG++G
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGMYPQMANAAAVAAAFGGGLPPGVSG 240
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 241 TNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 300
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKRLEVNFSKHPNITQGADTHEY NSNLNRFNRNAAKNYRYCCSPTKMIH+S
Sbjct: 301 FLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHIS 360
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
+L Q+VTEEEIVS LEEHG IVN+KLFEMNGKKQAL++F+TEEQATEALVCKHAS L GS
Sbjct: 361 SLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQATEALVCKHASLLSGS 420
Query: 421 IIRISFSQLQSI 432
IIRISFSQLQ++
Sbjct: 421 IIRISFSQLQTL 432
>gi|209362272|gb|ACI43571.1| RBP50 [Cucurbita maxima]
Length = 445
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/445 (87%), Positives = 414/445 (93%), Gaps = 13/445 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSA+NALQF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+ NVQP+IRGRNVYVQFSSHQELTT +QNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61 FANVQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
F PHGFVEKIVTFQKSAGFQALIQYQ R A+ AR++LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQS-GYSEAG------------VAFPQMANAAAIA 227
QVNYNNERSRDFTNP+LP+E KGRPSQ GY +AG V FPQMANAAA+A
Sbjct: 181 QVNYNNERSRDFTNPSLPSEPKGRPSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVA 240
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGGGLPPG++GTNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI RIKLLRNKPDHALV
Sbjct: 241 AAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALV 300
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
QMGDGFQAELAVHFLKGA+LFGKRLEVNFSKHPNITQGADTHEY NSNLNRFNRNAAKNY
Sbjct: 301 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNY 360
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
RYCCSPTKMIH+S+L Q+VTEEEIV+ LEEHG I+NTKLFEMNGKKQAL++F+TEEQATE
Sbjct: 361 RYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATE 420
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALVCKHASSL GSIIRISFSQLQSI
Sbjct: 421 ALVCKHASSLSGSIIRISFSQLQSI 445
>gi|297852124|ref|XP_002893943.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339785|gb|EFH70202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 432
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/432 (87%), Positives = 410/432 (94%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SAI+ALQF
Sbjct: 1 MAESSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAISALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNN+RSRD+TNPNLPAEQKGR S GY + GVA+PQMAN +AIAAAFGGGLPPGITG
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPGYGDVGVAYPQMANTSAIAAAFGGGLPPGITG 240
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 241 TNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 300
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCCSPTKMIHLS
Sbjct: 301 FLKGAVLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TLPQDVTEEE+++H++EHG+IVNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGS
Sbjct: 361 TLPQDVTEEEVMNHVQEHGAIVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGS 420
Query: 421 IIRISFSQLQSI 432
IIRISFSQLQ+I
Sbjct: 421 IIRISFSQLQTI 432
>gi|224066621|ref|XP_002302167.1| predicted protein [Populus trichocarpa]
gi|222843893|gb|EEE81440.1| predicted protein [Populus trichocarpa]
Length = 436
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/435 (90%), Positives = 411/435 (94%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQ
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQL 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
YTN+QPTIRGRNVYVQFSSHQELTTM+QN QGRGDEPNRILLVTIHHMLYPITVEVLHQV
Sbjct: 61 YTNIQPTIRGRNVYVQFSSHQELTTMDQNTQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQYQ R AV AR+SLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FSPHGFVEKIVTFQKSAGFQALIQYQSRQCAVQARTSLQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNN+RSRDFTNPNLP+EQKGR SQ + P M NAAAIAAAFGGGLPPGI+G
Sbjct: 181 QVNYNNDRSRDFTNPNLPSEQKGRSSQVCTGLLTIYHPLMPNAAAIAAAFGGGLPPGISG 240
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVL SNLN DRIDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 241 TNDRCTVLASNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 300
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKR+EVNFSKHPNITQGADTHEYM+SNLNRFNRNAAKNYRYCCSPTKMIHLS
Sbjct: 301 FLKGAMLFGKRMEVNFSKHPNITQGADTHEYMHSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TLPQ +TEEEI + +EEHG+IVNTKLFEMNGKKQALVLFETEE+ATEALVCKHA+SL GS
Sbjct: 361 TLPQVITEEEIGNLVEEHGTIVNTKLFEMNGKKQALVLFETEEEATEALVCKHATSLAGS 420
Query: 421 IIRISFSQLQSIREN 435
I+RISFSQLQSIREN
Sbjct: 421 IVRISFSQLQSIREN 435
>gi|356499519|ref|XP_003518587.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Glycine max]
Length = 439
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/440 (87%), Positives = 409/440 (92%), Gaps = 9/440 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD+PSA+NALQF
Sbjct: 1 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y NVQP+IRGRNVYVQFSSHQELTTM+QN Q R DEPNRILLVT+HHMLYPIT +VLHQV
Sbjct: 61 YANVQPSIRGRNVYVQFSSHQELTTMDQN-QAREDEPNRILLVTVHHMLYPITADVLHQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQYQ R SAV ARS+LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV--------AFPQMANAAAIAAAFGG 232
QVNYNN+RSRDFTNPNLP EQKGR SQ GY +AG F QMANAAAIAAAFGG
Sbjct: 180 QVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGGMHSGARAGGFSQMANAAAIAAAFGG 239
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
GLPPGITGTN+RCTVLV+NLN DRIDEDK+FNLFS+YGNI+RIKLLRNKPDHAL+QMGDG
Sbjct: 240 GLPPGITGTNERCTVLVANLNPDRIDEDKMFNLFSIYGNIVRIKLLRNKPDHALIQMGDG 299
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
FQAELAVHFLKGA+LFGKRLEVN+SKH NITQGADTHEY NSNLNRFNRNAAKNYRYCCS
Sbjct: 300 FQAELAVHFLKGAMLFGKRLEVNYSKHANITQGADTHEYANSNLNRFNRNAAKNYRYCCS 359
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
PTKMIHLSTLPQD+TEEEIVS LEEHG+IVN+K+FEMNGKKQALV FETEEQATEALVCK
Sbjct: 360 PTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCK 419
Query: 413 HASSLGGSIIRISFSQLQSI 432
HAS L GS++RISFSQLQ+I
Sbjct: 420 HASPLSGSVVRISFSQLQNI 439
>gi|22329999|ref|NP_175010.2| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|145324166|ref|NP_001077672.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|75323651|sp|Q6ICX4.1|PTBP3_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 3
gi|48525347|gb|AAT44975.1| At1g43190 [Arabidopsis thaliana]
gi|50198952|gb|AAT70479.1| At1g43190 [Arabidopsis thaliana]
gi|110737368|dbj|BAF00629.1| hypothetical protein [Arabidopsis thaliana]
gi|332193840|gb|AEE31961.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|332193841|gb|AEE31962.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
Length = 432
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/432 (86%), Positives = 409/432 (94%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNN+RSRD+TNPNLPAEQKGR S Y + GVA+PQMAN +AIAAAFGGGLPPGITG
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGGGLPPGITG 240
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 241 TNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 300
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCCSPTKMIHLS
Sbjct: 301 FLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TLPQDVTEEE+++H++EHG++VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGS
Sbjct: 361 TLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGS 420
Query: 421 IIRISFSQLQSI 432
IIRISFSQLQ+I
Sbjct: 421 IIRISFSQLQTI 432
>gi|359480735|ref|XP_002277938.2| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 1 [Vitis vinifera]
Length = 448
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/448 (84%), Positives = 407/448 (90%), Gaps = 16/448 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVG EISENDLLQL PFGV+TKLVMLRAKNQALLQMQDV SA++ALQ+
Sbjct: 1 MTEPSKVIHVRNVGPEISENDLLQLVHPFGVVTKLVMLRAKNQALLQMQDVASAVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR-GDE---PNRILLVTIHHMLYPITVEV 116
Y NVQP++RGRNVYVQFSSHQELTTM+QN+QGR GD+ PNRILLVTIHH+LYPITVEV
Sbjct: 61 YANVQPSVRGRNVYVQFSSHQELTTMDQNSQGRKGDQDAQPNRILLVTIHHLLYPITVEV 120
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVFSPHGFVEKIVTFQKSAGFQALIQYQ R SAV A ++LQGRNIYDGCCQLDIQFSN
Sbjct: 121 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYDGCCQLDIQFSN 180
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAA 224
L ELQVNYNNERSRDFTNP+LP+EQKGR SQSGY + G VAFPQM NA
Sbjct: 181 LTELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDGGGMYALQPPGARPVAFPQMGNAT 240
Query: 225 AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 284
AIAAAFGGGLPPGI+GTNDRCTVLVSNLN D IDEDKLFNLFSLYGNI+RIKLLR+KPDH
Sbjct: 241 AIAAAFGGGLPPGISGTNDRCTVLVSNLNPDEIDEDKLFNLFSLYGNIVRIKLLRSKPDH 300
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAA 344
ALVQMGDGFQAELAVHFLKGA+LFGKRLEVNFSK+PNIT DTH+Y NSNLNRFNRNAA
Sbjct: 301 ALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKYPNITPAPDTHDYSNSNLNRFNRNAA 360
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KNYRYCCSPTKMIH+STLPQD+TEEEIV+HLE+HGSIVNTKLFE NGKKQALVLFETEEQ
Sbjct: 361 KNYRYCCSPTKMIHVSTLPQDITEEEIVTHLEKHGSIVNTKLFEANGKKQALVLFETEEQ 420
Query: 405 ATEALVCKHASSLGGSIIRISFSQLQSI 432
ATEALVCKHAS + GS IRISFSQLQ+I
Sbjct: 421 ATEALVCKHASLIDGSTIRISFSQLQAI 448
>gi|356535770|ref|XP_003536416.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Glycine max]
Length = 443
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/444 (86%), Positives = 411/444 (92%), Gaps = 13/444 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSA+NALQF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y NVQP+IRGRNVYVQFSSHQELTTM+Q +QGRGDEPNRILLVT+HHMLYP+TV+VL+QV
Sbjct: 61 YANVQPSIRGRNVYVQFSSHQELTTMDQ-SQGRGDEPNRILLVTVHHMLYPMTVDVLYQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHG VEKIVTFQKSAGFQALIQYQ R SAV ARS+LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAAAIAA 228
QVNYNN+RSRDFTNPNLP EQKGRPSQ GY +AG V FPQMANAAAIAA
Sbjct: 180 QVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGNMYAAQGSGARAVGFPQMANAAAIAA 239
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGGGLPPGITGTNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHAL+Q
Sbjct: 240 AFGGGLPPGITGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIMRIKLLRNKPDHALIQ 299
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
MGDGFQA+LAVHFL+GA+LF KRLEVNFSKHP IT GADTHEY++SNLNRFNRNAAKNYR
Sbjct: 300 MGDGFQAKLAVHFLRGAMLFEKRLEVNFSKHPKITPGADTHEYISSNLNRFNRNAAKNYR 359
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
YCC PTKMIHLSTLP D+TEEEIVS +EEHG IVN+K+FEMNGKKQALV FE EEQATEA
Sbjct: 360 YCCPPTKMIHLSTLPLDITEEEIVSLVEEHGIIVNSKVFEMNGKKQALVQFENEEQATEA 419
Query: 409 LVCKHASSLGGSIIRISFSQLQSI 432
LVCKHAS+L GS+IRISFSQLQ+I
Sbjct: 420 LVCKHASTLSGSVIRISFSQLQNI 443
>gi|449441197|ref|XP_004138369.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 1 [Cucumis sativus]
Length = 434
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/434 (87%), Positives = 409/434 (94%), Gaps = 2/434 (0%)
Query: 1 MTEPSKVIHVRNVGHEIS--ENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINAL 58
MTEPSKVIHVRNVG +S +NDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSA+NAL
Sbjct: 1 MTEPSKVIHVRNVGLSLSLSQNDLLQLFQPFGVITKLVMLRAKNQALMQMQDVPSAVNAL 60
Query: 59 QFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLH 118
QF+ N+QP+IRGRNVYVQFSSHQELTT +QNAQGRGDEPNRILLVTIHHMLYPITVEVLH
Sbjct: 61 QFFANLQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLH 120
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178
QVF PHGFVEKIVTFQKSAGFQALIQYQ R AV AR++LQGRNIYDGCCQLDIQFSNLD
Sbjct: 121 QVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRNIYDGCCQLDIQFSNLD 180
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGI 238
ELQVNYNNERSRDFTNP+LP+E KGR SQ GY + G +PQMANAAA+AAAFGGGLPPG+
Sbjct: 181 ELQVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGMYPQMANAAAVAAAFGGGLPPGV 240
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
+GTNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALVQMGDGFQAELA
Sbjct: 241 SGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELA 300
Query: 299 VHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
VHFLKGA+LFGKRLEVNFSKHPNITQGADTHEY NSNLNRFNRNAAKNYRYCCSPTKMIH
Sbjct: 301 VHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIH 360
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
+S+L Q+VTEEEIVS LEEHG IVN+KLFEMNGKKQAL++F+TEEQATEALVCKHAS L
Sbjct: 361 ISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQATEALVCKHASLLS 420
Query: 419 GSIIRISFSQLQSI 432
GSIIRISFSQLQ++
Sbjct: 421 GSIIRISFSQLQTL 434
>gi|334702289|gb|AEG89704.1| polypyrimidine tract-binding protein 6 [Solanum tuberosum]
Length = 444
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/444 (83%), Positives = 406/444 (91%), Gaps = 12/444 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVG EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD+ +A+NA+QF
Sbjct: 1 MTEPSKVIHVRNVGQEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIAAAVNAMQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y+NVQP+IRGR+VYVQFSSHQELTT++QNAQGRGDEPNRILLV+IHH+LYPITVEVLHQV
Sbjct: 61 YSNVQPSIRGRSVYVQFSSHQELTTVDQNAQGRGDEPNRILLVSIHHVLYPITVEVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHG VEKIVTFQKSAGFQALIQY+L +A+ AR+SLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FSPHGIVEKIVTFQKSAGFQALIQYELTQTAISARNSLQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAAAIAA 228
QV+YNNER RDFTNPNLP+E KG+ Q GY +AG V FPQM NAAAIA
Sbjct: 181 QVSYNNERPRDFTNPNLPSEPKGKSPQQGYGDAGAMYPWQGSGPRGVGFPQMGNAAAIAT 240
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AF GLPPGI+GTNDRCT++VSNLN DRIDEDKLFNLFS+YGNI+RIK LRNKPDHALVQ
Sbjct: 241 AFPSGLPPGISGTNDRCTIIVSNLNPDRIDEDKLFNLFSIYGNIVRIKHLRNKPDHALVQ 300
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
MGDGFQAELAVHFLKGA+LFG+RLEVN+SK+PNI G +T +Y NSNLNRFNRNAAKNYR
Sbjct: 301 MGDGFQAELAVHFLKGAMLFGQRLEVNYSKYPNINTGPETRDYSNSNLNRFNRNAAKNYR 360
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
YCCSPTKMIH+S+LPQDVTEEEIV+HLEEHG IVNTKLFEMNGKKQALVLF+ EEQATEA
Sbjct: 361 YCCSPTKMIHVSSLPQDVTEEEIVAHLEEHGPIVNTKLFEMNGKKQALVLFDNEEQATEA 420
Query: 409 LVCKHASSLGGSIIRISFSQLQSI 432
LVC+HA+SLGGSIIRISFSQ+QSI
Sbjct: 421 LVCQHATSLGGSIIRISFSQVQSI 444
>gi|357443609|ref|XP_003592082.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355481130|gb|AES62333.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|388492616|gb|AFK34374.1| unknown [Medicago truncatula]
Length = 443
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/444 (84%), Positives = 410/444 (92%), Gaps = 13/444 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSA++AL F
Sbjct: 1 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALHF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y N QP+IRGRNVYVQFSSHQELTT++Q +QGRGDEPNRILLVTIHH+LYPITV+VL+QV
Sbjct: 61 YGNTQPSIRGRNVYVQFSSHQELTTIDQ-SQGRGDEPNRILLVTIHHVLYPITVDVLYQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHG VEKIVTFQKSAGFQALIQYQ + S++ AR++LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTALQGRNIYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAAAIAA 228
QVNYNN+RSRDFTNPNLP EQKGRP Q GY +AG V +PQM NAAAIAA
Sbjct: 180 QVNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGNMYGVQGSGPRTVGYPQMPNAAAIAA 239
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGGGLPPGITGTNDRCT+LVSNLN DRIDEDKLFNLFSLYGNI+RIKLLRNKPDHAL+Q
Sbjct: 240 AFGGGLPPGITGTNDRCTLLVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQ 299
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
MGDGFQAELAVHFLKGA+LF KRLEVNFSKHPNITQGADTH+Y NSNLNRFNRNAAKNYR
Sbjct: 300 MGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYR 359
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
YCCSPTKMIHLSTLPQD+TE+EIV+ LEEHG+IVN+K+FEMNGKKQ LV FETE+QATEA
Sbjct: 360 YCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQATEA 419
Query: 409 LVCKHASSLGGSIIRISFSQLQSI 432
LVCKHA+SL GS+IRIS+SQLQ+I
Sbjct: 420 LVCKHATSLSGSVIRISYSQLQNI 443
>gi|145324168|ref|NP_001077673.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|332193842|gb|AEE31963.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
Length = 430
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/432 (86%), Positives = 407/432 (94%), Gaps = 2/432 (0%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+TNVQPTIR NVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIR--NVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 118
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 119 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 178
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNN+RSRD+TNPNLPAEQKGR S Y + GVA+PQMAN +AIAAAFGGGLPPGITG
Sbjct: 179 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGGGLPPGITG 238
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 239 TNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 298
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCCSPTKMIHLS
Sbjct: 299 FLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLS 358
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TLPQDVTEEE+++H++EHG++VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGS
Sbjct: 359 TLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGS 418
Query: 421 IIRISFSQLQSI 432
IIRISFSQLQ+I
Sbjct: 419 IIRISFSQLQTI 430
>gi|224082480|ref|XP_002306709.1| predicted protein [Populus trichocarpa]
gi|222856158|gb|EEE93705.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/435 (88%), Positives = 412/435 (94%), Gaps = 2/435 (0%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQ+
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
YT+VQPTIRGRNVY+QFSSHQELTTM+QN QGRG+EPNRILL+TIHHM YPITV+VLHQV
Sbjct: 61 YTDVQPTIRGRNVYIQFSSHQELTTMDQNTQGRGEEPNRILLITIHHMQYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEK+VTFQKSAGFQALIQYQ R SAV AR+SLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FSPHGFVEKMVTFQKSAGFQALIQYQSRQSAVQARTSLQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNN+ SRDFTNPNLP+EQK R SQ + + M NAAAIAAAFGGGLPPGI+G
Sbjct: 181 QVNYNNDSSRDFTNPNLPSEQKARSSQ--VCTRLLLYFHMPNAAAIAAAFGGGLPPGISG 238
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCT+LVSNLN DRIDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 239 TNDRCTILVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 298
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKR+EVNFSKHPNITQGADTHEYM+SNLNRFNRNAAKNYRYCCSPTKMIHLS
Sbjct: 299 FLKGAMLFGKRMEVNFSKHPNITQGADTHEYMHSNLNRFNRNAAKNYRYCCSPTKMIHLS 358
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TLPQ +TE+EIVS +EEHG++VNTKLFEMNGKKQALVLFETEE+ATEALVCKHA+SL GS
Sbjct: 359 TLPQVITEDEIVSLVEEHGTVVNTKLFEMNGKKQALVLFETEEEATEALVCKHATSLAGS 418
Query: 421 IIRISFSQLQSIREN 435
I+RISFSQLQSIREN
Sbjct: 419 IVRISFSQLQSIREN 433
>gi|334702287|gb|AEG89703.1| polypyrimidine tract-binding protein 1 [Solanum tuberosum]
Length = 441
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/441 (85%), Positives = 410/441 (92%), Gaps = 9/441 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M++PSKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSA+ ALQF
Sbjct: 1 MSDPSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVKALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y+NVQP+IRGRNVYVQFSSHQELTTM+QNAQGRGDEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 YSNVQPSIRGRNVYVQFSSHQELTTMDQNAQGRGDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQYQ++ S+V AR+SLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 121 FSPHGFVEKIVTFQKSAGFQALIQYQVQQSSVSARNSLQGRNIYDGCCQLDIQFSNLDEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSE------AGV---AFPQMANAAAIAAAFG 231
QVNYNNERSRD+TNPNLP+EQKG+ SQ GY + +G FPQM NA AIAAAF
Sbjct: 181 QVNYNNERSRDYTNPNLPSEQKGKSSQQGYGDMYSFQGSGAHPGGFPQMGNAEAIAAAFA 240
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
GGLPPGI+GTNDRCT+LVSNLNSDRI+EDKLFNL SLYGNI+ IK+LRNKPDHALVQ+GD
Sbjct: 241 GGLPPGISGTNDRCTILVSNLNSDRINEDKLFNLCSLYGNIVSIKILRNKPDHALVQLGD 300
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
GFQAELAVHFLKGA+LF KRLEVNFSK+PNIT G DTH+Y NSNLNRFNRNAAKNYRYCC
Sbjct: 301 GFQAELAVHFLKGAMLFEKRLEVNFSKYPNITTGPDTHDYSNSNLNRFNRNAAKNYRYCC 360
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
SPTKMIHLS+LPQDVTE EI++HLEEHG I+N+KLFEMNGK+QALVLF+ EEQATEALVC
Sbjct: 361 SPTKMIHLSSLPQDVTEAEIIAHLEEHGPIINSKLFEMNGKQQALVLFDKEEQATEALVC 420
Query: 412 KHASSLGGSIIRISFSQLQSI 432
K+A+SLG S IRISFSQLQSI
Sbjct: 421 KNATSLGSSTIRISFSQLQSI 441
>gi|356559629|ref|XP_003548101.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Glycine max]
Length = 439
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/440 (87%), Positives = 409/440 (92%), Gaps = 9/440 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD+PSA+NALQF
Sbjct: 1 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y NVQP+IRGRNVYVQFSSHQELTTM+QN Q R DEPNRILLVT+HHMLYPIT +VLHQV
Sbjct: 61 YANVQPSIRGRNVYVQFSSHQELTTMDQN-QAREDEPNRILLVTVHHMLYPITADVLHQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQYQ R SAV ARS+LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV--------AFPQMANAAAIAAAFGG 232
QVNYNN+RSRDFTNPNLP EQKGR SQ GY +A F QMANAAAIAAAFGG
Sbjct: 180 QVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAAGMYSGARAGGFSQMANAAAIAAAFGG 239
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
GLPPGITGTN+RCTVLV+NLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHAL+QMGDG
Sbjct: 240 GLPPGITGTNERCTVLVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDG 299
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
FQAELAVHFLKGA+LFGKRLEVN+SKH NITQGADTHEY+NSNLNRFNRNAAKNYRYCCS
Sbjct: 300 FQAELAVHFLKGAMLFGKRLEVNYSKHANITQGADTHEYVNSNLNRFNRNAAKNYRYCCS 359
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
PTKM+HLSTLPQD+TEEE+VS LEEHG+IVN+K+FEMNGKKQALV FETEEQATEALVCK
Sbjct: 360 PTKMVHLSTLPQDITEEEVVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCK 419
Query: 413 HASSLGGSIIRISFSQLQSI 432
HAS L GS++RISFSQLQ+I
Sbjct: 420 HASPLSGSVVRISFSQLQNI 439
>gi|147856398|emb|CAN82466.1| hypothetical protein VITISV_002663 [Vitis vinifera]
Length = 476
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 403/476 (84%), Gaps = 44/476 (9%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVG EISENDLLQL PFGV+TKLVMLRAKNQALLQMQDV SA++ALQ+
Sbjct: 1 MTEPSKVIHVRNVGPEISENDLLQLVHPFGVVTKLVMLRAKNQALLQMQDVASAVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR-GDE---PNRILLVTIHHMLYPITVEV 116
Y NVQP++RGRNVYVQFSSHQELTTM+QN+QGR GD+ PNRILLVTIHH+LYPITVEV
Sbjct: 61 YANVQPSVRGRNVYVQFSSHQELTTMDQNSQGRKGDQDAQPNRILLVTIHHLLYPITVEV 120
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVFSPHGFVEKIVTFQKSAGFQALIQYQ R SAV A ++LQGRNIYDGCCQLDIQFSN
Sbjct: 121 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYDGCCQLDIQFSN 180
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA-------------------- 216
L ELQVNYNNERSRDFTNP+LP+EQKGR SQSGY + G
Sbjct: 181 LTELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDGGGMYALQPPGARPGSSLAPGSII 240
Query: 217 --------------------FPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR 256
F M NA AIAAAFGGGLPPGI+GTNDRCTVLVSNLN D
Sbjct: 241 VFGTAQEQIVNYLIIVHSDIFVVMGNATAIAAAFGGGLPPGISGTNDRCTVLVSNLNPDE 300
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
IDEDKLFNLFSLYGNI+RIKLLR+KPDHALVQMGDGFQAELAVHFLKGA+LFGKRLEVNF
Sbjct: 301 IDEDKLFNLFSLYGNIVRIKLLRSKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNF 360
Query: 317 SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
SK+PNIT DTH+Y NSNLNRFNRNAAKNYRYCCSPTKMIH+STLPQD+TEEEIV+HLE
Sbjct: 361 SKYPNITPAPDTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHVSTLPQDITEEEIVTHLE 420
Query: 377 EHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
+HGSIVNTKLFE NGKKQALVLFETEEQATEALVCKHAS + GS IRISFSQLQ+I
Sbjct: 421 KHGSIVNTKLFEANGKKQALVLFETEEQATEALVCKHASLIDGSTIRISFSQLQAI 476
>gi|28949889|emb|CAD70621.1| polypyrimidine track-binding protein homologue [Cicer arietinum]
Length = 442
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/443 (84%), Positives = 400/443 (90%), Gaps = 12/443 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIHVRNVGHEISENDLLQLFQ FGVITKLVMLR KNQALLQM+D+PSAI+ALQF
Sbjct: 1 MAEPSKVIHVRNVGHEISENDLLQLFQTFGVITKLVMLRTKNQALLQMEDIPSAISALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y N QP+IRGRNVYVQFSSH+ELTTM+Q +QGR DEPNRILLVT+H M YPITV+VL QV
Sbjct: 61 YANAQPSIRGRNVYVQFSSHKELTTMDQ-SQGRDDEPNRILLVTVHQMQYPITVDVLQQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHG+VEKIVTFQKSAGFQALIQY+ R SAV ARSSLQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGYVEKIVTFQKSAGFQALIQYESRQSAVTARSSLQGRNIYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV-----------AFPQMANAAAIAAA 229
QVNYNN+RSRD+TNPNLP EQKGRPS SGY + G+ F QM NAAAI AA
Sbjct: 180 QVNYNNDRSRDYTNPNLPTEQKGRPSHSGYGDTGMHGVQGSGARPGGFSQMTNAAAIEAA 239
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
FGG LPPGITGTNDRCTVLV+NLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALVQM
Sbjct: 240 FGGDLPPGITGTNDRCTVLVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQM 299
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRY 349
GDGFQAELAV+FLKGA+LFGKRLEVNFSKHPNI QGADTHEYMNSNLNRFNRNAAKNYRY
Sbjct: 300 GDGFQAELAVYFLKGAMLFGKRLEVNFSKHPNIIQGADTHEYMNSNLNRFNRNAAKNYRY 359
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
CCSPTK+IHLSTLPQD+ EEEI S LEEHG +VN K+FEMNGKKQALV FETEE+ATEAL
Sbjct: 360 CCSPTKIIHLSTLPQDIIEEEIASLLEEHGLVVNCKVFEMNGKKQALVQFETEEEATEAL 419
Query: 410 VCKHASSLGGSIIRISFSQLQSI 432
VCKHAS L GSI+RISFSQLQ+I
Sbjct: 420 VCKHASPLSGSIVRISFSQLQNI 442
>gi|363814551|ref|NP_001242751.1| uncharacterized protein LOC100819672 [Glycine max]
gi|255639782|gb|ACU20184.1| unknown [Glycine max]
Length = 431
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/411 (88%), Positives = 385/411 (93%), Gaps = 13/411 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSA+NALQF
Sbjct: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y NVQP+IRGRNVYVQFSSHQELTTMEQ +QGRGDEPNRILLVT+HHMLYP+TV+VL+QV
Sbjct: 61 YANVQPSIRGRNVYVQFSSHQELTTMEQ-SQGRGDEPNRILLVTVHHMLYPMTVDVLYQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHG VEKIVTFQKSAGFQALIQYQ R SAV ARS+LQGRNIYDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAAAIAA 228
QVNYNN+RSRDFTNPNLP EQKGRPSQ GY +AG V FPQMANAAAIAA
Sbjct: 180 QVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGNMYAAQGSGARAVGFPQMANAAAIAA 239
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGGGLPPGITGTNDRCTVLVSNLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHAL+Q
Sbjct: 240 AFGGGLPPGITGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQ 299
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
MGDGFQAELAVHFLKGA+LF KRLEVNFSKHPNITQGADTHEY+NSNLNRFNRNAAKNYR
Sbjct: 300 MGDGFQAELAVHFLKGAMLFEKRLEVNFSKHPNITQGADTHEYINSNLNRFNRNAAKNYR 359
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
YCCSPTKMIHLSTLPQD+TEEEIVS +EEHG+IVN+K+FEMNGKKQALV F
Sbjct: 360 YCCSPTKMIHLSTLPQDITEEEIVSLVEEHGTIVNSKVFEMNGKKQALVQF 410
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 21/183 (11%)
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL--LFGKRLEV 314
I E+ L LF +G I ++ +LR K + AL+QM D A A+ F + G+ + V
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAK-NQALIQMQDVPSAVNALQFYANVQPSIRGRNVYV 75
Query: 315 NFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 374
FS H +T T E + NR + P +T + +
Sbjct: 76 QFSSHQELT----TMEQSQGRGDEPNRILLVTVHHMLYP------------MTVDVLYQV 119
Query: 375 LEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL--GGSIIRISFSQLQSI 432
HGS+ F+ + QAL+ +++ + A A ++ G + I FS L +
Sbjct: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQFSNLDEL 179
Query: 433 REN 435
+ N
Sbjct: 180 QVN 182
>gi|359480737|ref|XP_003632518.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 2 [Vitis vinifera]
Length = 412
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/412 (84%), Positives = 374/412 (90%), Gaps = 16/412 (3%)
Query: 37 MLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR-GD 95
MLRAKNQALLQMQDV SA++ALQ+Y NVQP++RGRNVYVQFSSHQELTTM+QN+QGR GD
Sbjct: 1 MLRAKNQALLQMQDVASAVSALQYYANVQPSVRGRNVYVQFSSHQELTTMDQNSQGRKGD 60
Query: 96 E---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+ PNRILLVTIHH+LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ R SAV
Sbjct: 61 QDAQPNRILLVTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAV 120
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSE 212
A ++LQGRNIYDGCCQLDIQFSNL ELQVNYNNERSRDFTNP+LP+EQKGR SQSGY +
Sbjct: 121 SAINALQGRNIYDGCCQLDIQFSNLTELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGD 180
Query: 213 AG------------VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
G VAFPQM NA AIAAAFGGGLPPGI+GTNDRCTVLVSNLN D IDED
Sbjct: 181 GGGMYALQPPGARPVAFPQMGNATAIAAAFGGGLPPGISGTNDRCTVLVSNLNPDEIDED 240
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
KLFNLFSLYGNI+RIKLLR+KPDHALVQMGDGFQAELAVHFLKGA+LFGKRLEVNFSK+P
Sbjct: 241 KLFNLFSLYGNIVRIKLLRSKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKYP 300
Query: 321 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS 380
NIT DTH+Y NSNLNRFNRNAAKNYRYCCSPTKMIH+STLPQD+TEEEIV+HLE+HGS
Sbjct: 301 NITPAPDTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHVSTLPQDITEEEIVTHLEKHGS 360
Query: 381 IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
IVNTKLFE NGKKQALVLFETEEQATEALVCKHAS + GS IRISFSQLQ+I
Sbjct: 361 IVNTKLFEANGKKQALVLFETEEQATEALVCKHASLIDGSTIRISFSQLQAI 412
>gi|449441199|ref|XP_004138370.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 2 [Cucumis sativus]
Length = 408
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/408 (85%), Positives = 375/408 (91%), Gaps = 12/408 (2%)
Query: 37 MLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE 96
MLRAKNQAL+QMQDVPSA+NALQF+ N+QP+IRGRNVYVQFSSHQELTT +QNAQGRGDE
Sbjct: 1 MLRAKNQALMQMQDVPSAVNALQFFANLQPSIRGRNVYVQFSSHQELTTADQNAQGRGDE 60
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PNRILLVTIHHMLYPITVEVLHQVF PHGFVEKIVTFQKSAGFQALIQYQ R AV AR+
Sbjct: 61 PNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSART 120
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG-- 214
+LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP+LP+E KGR SQ GY + G
Sbjct: 121 ALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGM 180
Query: 215 ----------VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
V F QMANAAA+AAAFGGGLPPG++GTNDRCTVLVSNLN DRIDEDKLFN
Sbjct: 181 YPLQPSGARPVGFSQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFN 240
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ 324
LFS+YGNI+RIKLLRNKPDHALVQMGDGFQAELAVHFLKGA+LFGKRLEVNFSKHPNITQ
Sbjct: 241 LFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQ 300
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
GADTHEY NSNLNRFNRNAAKNYRYCCSPTKMIH+S+L Q+VTEEEIVS LEEHG IVN+
Sbjct: 301 GADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNS 360
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
KLFEMNGKKQAL++F+TEEQATEALVCKHAS L GSIIRISFSQLQ++
Sbjct: 361 KLFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 408
>gi|357443611|ref|XP_003592083.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355481131|gb|AES62334.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 407
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/408 (83%), Positives = 375/408 (91%), Gaps = 13/408 (3%)
Query: 37 MLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE 96
MLRAKNQAL+QMQDVPSA++AL FY N QP+IRGRNVYVQFSSHQELTT++Q +QGRGDE
Sbjct: 1 MLRAKNQALIQMQDVPSAVSALHFYGNTQPSIRGRNVYVQFSSHQELTTIDQ-SQGRGDE 59
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PNRILLVTIHH+LYPITV+VL+QVFSPHG VEKIVTFQKSAGFQALIQYQ + S++ AR+
Sbjct: 60 PNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITART 119
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG-- 214
+LQGRNIYDGCCQLDIQFSNLDELQVNYNN+RSRDFTNPNLP EQKGRP Q GY +AG
Sbjct: 120 ALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGNM 179
Query: 215 ----------VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
V +PQM NAAAIAAAFGGGLPPGITGTNDRCT+LVSNLN DRIDEDKLFN
Sbjct: 180 YGVQGSGPRTVGYPQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPDRIDEDKLFN 239
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ 324
LFSLYGNI+RIKLLRNKPDHAL+QMGDGFQAELAVHFLKGA+LF KRLEVNFSKHPNITQ
Sbjct: 240 LFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQ 299
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
GADTH+Y NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD+TE+EIV+ LEEHG+IVN+
Sbjct: 300 GADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNS 359
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
K+FEMNGKKQ LV FETE+QATEALVCKHA+SL GS+IRIS+SQLQ+I
Sbjct: 360 KVFEMNGKKQGLVQFETEDQATEALVCKHATSLSGSVIRISYSQLQNI 407
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 18/102 (17%)
Query: 3 EPSKV--IHVRNVGHEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINAL 58
EP+++ + + +V + I+ + L Q+F P G + K+V + A QAL+Q Q S+I A
Sbjct: 59 EPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITA- 117
Query: 59 QFYTNVQPTIRGRNVY-------VQFSSHQELTTMEQNAQGR 93
+ ++GRN+Y +QFS+ EL N + R
Sbjct: 118 ------RTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSR 153
>gi|413933764|gb|AFW68315.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
gi|413945515|gb|AFW78164.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 444
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/445 (72%), Positives = 385/445 (86%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFGV++K+VMLRAKNQ LLQM+D+ ++++ALQ+
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQTLLQMEDIHASVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR EPNRILLVTIHHM+YPITVEV
Sbjct: 61 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQESEPNRILLVTIHHMIYPITVEV 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQ+ R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAGVAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ Y +AG ++ QM AA IA
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQAYPDPANLYAFQQAGASYAQMGRAAMIA 239
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 240 AAFGGTLPHGVTGTNERCTLIVSNLNNDKIDEDKLFNLFSLYGNIVRIKVLRNKPDHALV 299
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DG QAELAVH+LKGA+LFGK+LEVN+SK+PNIT D H+Y+NS+LNRFN N KNY
Sbjct: 300 EMADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRFNSNMVKNY 359
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CCSPTKMIH+S LPQ+++EE I++HL EHG++VNTKLFE+NGK+QALVLFETEE ATE
Sbjct: 360 RHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAATE 419
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 420 ALVSKHASTLEGNTIRISFSQMQSI 444
>gi|293335567|ref|NP_001169470.1| uncharacterized protein LOC100383343 [Zea mays]
gi|224029557|gb|ACN33854.1| unknown [Zea mays]
Length = 444
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/445 (71%), Positives = 388/445 (87%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFG+++K+VMLRAKNQALLQM+D+ ++++ALQ+
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGMVSKIVMLRAKNQALLQMEDLHASVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR----GDEPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR G EPNRILLVTIHHM+YPITVE+
Sbjct: 61 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQGSEPNRILLVTIHHMIYPITVEI 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQY R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAGVAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY +AG ++ QM A IA
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYLDPANLYAFQQAGASYAQMGRVAMIA 239
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 240 AAFGGTLPHGVTGTNERCTLIVSNLNTDKIDEDKLFNLFSLYGNIVRIKILRNKPDHALV 299
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DG QAELAVH+LKG++LFGK+LEVN+SK+PNIT D H+Y+NS++NRFN N KNY
Sbjct: 300 EMADGLQAELAVHYLKGSILFGKKLEVNYSKYPNITPAPDAHDYLNSSINRFNSNVVKNY 359
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CCSPTKMIH+S LPQD++EE I++H+ EHG+++NTKLFE+NGK+QAL+LF++EE+ATE
Sbjct: 360 RHCCSPTKMIHISALPQDISEEAILNHVSEHGTVLNTKLFEVNGKRQALILFKSEEEATE 419
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 420 ALVSKHASTLEGNTIRISFSQMQSI 444
>gi|413949171|gb|AFW81820.1| hypothetical protein ZEAMMB73_476847 [Zea mays]
Length = 529
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/445 (71%), Positives = 388/445 (87%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFG+++K+VMLRAKNQALLQM+D+ ++++ALQ+
Sbjct: 86 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGMVSKIVMLRAKNQALLQMEDLHASVSALQY 145
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR----GDEPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR G EPNRILLVTIHHM+YPITVE+
Sbjct: 146 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQGSEPNRILLVTIHHMIYPITVEI 204
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQY R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 205 LHQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 264
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAGVAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY +AG ++ QM A IA
Sbjct: 265 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYLDPANLYAFQQAGASYAQMGRVAMIA 324
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 325 AAFGGTLPHGVTGTNERCTLIVSNLNTDKIDEDKLFNLFSLYGNIVRIKILRNKPDHALV 384
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DG QAELAVH+LKG++LFGK+LEVN+SK+PNIT D H+Y+NS++NRFN N KNY
Sbjct: 385 EMADGLQAELAVHYLKGSILFGKKLEVNYSKYPNITPAPDAHDYLNSSINRFNSNVVKNY 444
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CCSPTKMIH+S LPQD++EE I++H+ EHG+++NTKLFE+NGK+QAL+LF++EE+ATE
Sbjct: 445 RHCCSPTKMIHISALPQDISEEAILNHVSEHGTVLNTKLFEVNGKRQALILFKSEEEATE 504
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 505 ALVSKHASTLEGNTIRISFSQMQSI 529
>gi|413933763|gb|AFW68314.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
Length = 445
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/446 (72%), Positives = 385/446 (86%), Gaps = 15/446 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFGV++K+VMLRAKNQ LLQM+D+ ++++ALQ+
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQTLLQMEDIHASVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR EPNRILLVTIHHM+YPITVEV
Sbjct: 61 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQESEPNRILLVTIHHMIYPITVEV 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQ+ R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQS----------GYSEAGVAFPQMANAAAI 226
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ + +AG ++ QM AA I
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQQAYPDPANLYAFQQAGASYAQMGRAAMI 239
Query: 227 AAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 286
AAAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LRNKPDHAL
Sbjct: 240 AAAFGGTLPHGVTGTNERCTLIVSNLNNDKIDEDKLFNLFSLYGNIVRIKVLRNKPDHAL 299
Query: 287 VQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKN 346
V+M DG QAELAVH+LKGA+LFGK+LEVN+SK+PNIT D H+Y+NS+LNRFN N KN
Sbjct: 300 VEMADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRFNSNMVKN 359
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
YR+CCSPTKMIH+S LPQ+++EE I++HL EHG++VNTKLFE+NGK+QALVLFETEE AT
Sbjct: 360 YRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAAT 419
Query: 407 EALVCKHASSLGGSIIRISFSQLQSI 432
EALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 420 EALVSKHASTLEGNTIRISFSQMQSI 445
>gi|413945516|gb|AFW78165.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 444
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/445 (72%), Positives = 384/445 (86%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFGV++K+VMLRAKNQ LLQM+D+ ++++ALQ+
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQTLLQMEDIHASVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR EPNRILLVTIHHM+YPITVEV
Sbjct: 61 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQESEPNRILLVTIHHMIYPITVEV 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQ+ R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAGVAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ Y +AG + QM AA IA
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQAYPDPANLYAFQQAGGSIYQMGRAAMIA 239
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 240 AAFGGTLPHGVTGTNERCTLIVSNLNNDKIDEDKLFNLFSLYGNIVRIKVLRNKPDHALV 299
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DG QAELAVH+LKGA+LFGK+LEVN+SK+PNIT D H+Y+NS+LNRFN N KNY
Sbjct: 300 EMADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRFNSNMVKNY 359
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CCSPTKMIH+S LPQ+++EE I++HL EHG++VNTKLFE+NGK+QALVLFETEE ATE
Sbjct: 360 RHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAATE 419
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 420 ALVSKHASTLEGNTIRISFSQMQSI 444
>gi|115464105|ref|NP_001055652.1| Os05g0437300 [Oryza sativa Japonica Group]
gi|113579203|dbj|BAF17566.1| Os05g0437300 [Oryza sativa Japonica Group]
gi|215734982|dbj|BAG95704.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196864|gb|EEC79291.1| hypothetical protein OsI_20097 [Oryza sativa Indica Group]
gi|222631716|gb|EEE63848.1| hypothetical protein OsJ_18672 [Oryza sativa Japonica Group]
Length = 444
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/445 (70%), Positives = 380/445 (85%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIH+RNVGHEI+E DLLQL QPFG ++K+VMLRAKNQALLQMQD+ ++++ALQ+
Sbjct: 1 MAEPSKVIHIRNVGHEIAEADLLQLLQPFGNVSKIVMLRAKNQALLQMQDLHNSVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
Y+ VQP++RGRNVY+QFSSHQELTT +QN+ GR EPNRILLVTIHHM+YPITVEV
Sbjct: 61 YSTVQPSVRGRNVYMQFSSHQELTT-DQNSHGRNSDQESEPNRILLVTIHHMMYPITVEV 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +G+VEKIVTFQKSAGFQALIQYQ A+ A +L GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAGVAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY + G ++ QM AA I
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQMGRAAMIT 239
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LPPG+TGTN+RCT++VSNLN+D+I+EDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 240 AAFGGTLPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKILRNKPDHALV 299
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DGFQAELAVH+LKGA+LF K+LEVN+SK+PNIT D H+Y S+LNRFN N KNY
Sbjct: 300 EMADGFQAELAVHYLKGAVLFAKKLEVNYSKYPNITSAPDAHDYTTSSLNRFNSNVIKNY 359
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CC+PTKMIH+S LPQ++TE+ I++H+ EHGS+VNTKLFE+NGK+QAL+ FE+EE+ATE
Sbjct: 360 RHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATE 419
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHA+SL G+ IRISFSQ+QSI
Sbjct: 420 ALVSKHATSLEGNTIRISFSQMQSI 444
>gi|357126039|ref|XP_003564696.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Brachypodium distachyon]
Length = 443
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/444 (70%), Positives = 381/444 (85%), Gaps = 13/444 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M +PS+VIH+RNVGHEISE+DLLQ+ QPFG + KLVMLRAKNQAL+QM+D+ ++++A+Q+
Sbjct: 1 MGDPSRVIHIRNVGHEISESDLLQVVQPFGTVAKLVMLRAKNQALVQMEDLAASVSAIQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG---DEPNRILLVTIHHMLYPITVEVL 117
YT +QP++RGRNVY+Q+SSHQELTT +Q++ GR DEPNRILLVT+HHMLYP+TVEVL
Sbjct: 61 YTTIQPSVRGRNVYLQYSSHQELTT-DQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVL 119
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
HQVFSP+GFVEKIVTFQK+AGFQALIQYQ R SA+ A +L GRNIYDGCCQLDIQ+SNL
Sbjct: 120 HQVFSPYGFVEKIVTFQKTAGFQALIQYQSRQSAIQACGALHGRNIYDGCCQLDIQYSNL 179
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA---------GVAFPQMANAAAIAA 228
ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY++ G A+ QM AA +AA
Sbjct: 180 SELQVHYNNDRSRDFTNPSLPTEQRQRSSQPGYNDPSVLFGFQQPGAAYAQMGQAAMVAA 239
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGG LPPG+TGTNDRCT++VSNLN++ ID DKLFNLFS+YGNIIRIK+LRNKPDHALVQ
Sbjct: 240 AFGGTLPPGVTGTNDRCTLIVSNLNTELIDGDKLFNLFSIYGNIIRIKILRNKPDHALVQ 299
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
M DG QAELAVH+LKGA+L G++LEVNFSK+P+IT D H+Y NSNLNRFN N AKNYR
Sbjct: 300 MADGLQAELAVHYLKGAMLLGQKLEVNFSKYPSITPAPDAHDYSNSNLNRFNSNVAKNYR 359
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
+CC+PT++IH+S LPQ+++E+ I++HL EHG+IV +KLFE GK QALV FE+EE+ATEA
Sbjct: 360 HCCAPTRIIHISALPQEISEDMILNHLGEHGTIVKSKLFEAGGKTQALVQFESEEEATEA 419
Query: 409 LVCKHASSLGGSIIRISFSQLQSI 432
LV KHAS L GS IRISFSQ+Q+I
Sbjct: 420 LVSKHASKLEGSTIRISFSQMQNI 443
>gi|242090663|ref|XP_002441164.1| hypothetical protein SORBIDRAFT_09g021560 [Sorghum bicolor]
gi|241946449|gb|EES19594.1| hypothetical protein SORBIDRAFT_09g021560 [Sorghum bicolor]
Length = 444
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/445 (72%), Positives = 386/445 (86%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFGV++K+VMLRAKNQALLQM+D+ ++++ALQ+
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQALLQMEDIHASVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR EPNRILLVTIHHM+YPITVEV
Sbjct: 61 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQESEPNRILLVTIHHMIYPITVEV 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQ+ R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAGVAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R Q GY +AG +F QM AA IA
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRAPQQGYPDPANLYAFQQAGASFAQMGRAAMIA 239
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LP G+TG N+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 240 AAFGGSLPHGVTGANERCTLIVSNLNTDKIDEDKLFNLFSLYGNIVRIKILRNKPDHALV 299
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DG QAELAVH+LKGA+LFGK+LEVN+SK+PNIT D H+Y+NS+LNRFN N KNY
Sbjct: 300 EMADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRFNSNVVKNY 359
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CCSPTKMIH+S LPQ+++EE I++H+ EHG+++NTKLFE+NGK+QALVLFETEE+ATE
Sbjct: 360 RHCCSPTKMIHISALPQEISEEAILNHVSEHGNVLNTKLFEVNGKRQALVLFETEEEATE 419
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 420 ALVSKHASTLEGNTIRISFSQMQSI 444
>gi|294461205|gb|ADE76165.1| unknown [Picea sitchensis]
Length = 461
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/460 (71%), Positives = 378/460 (82%), Gaps = 30/460 (6%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTE SKV+H+RNVG EISENDLLQL Q FG +TKLVMLRAKNQAL+QM D+PSAI L
Sbjct: 1 MTEASKVLHIRNVGAEISENDLLQLVQRFGTVTKLVMLRAKNQALMQMNDIPSAITVLDH 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--GDE---PNRILLVTIHHMLYPITVE 115
Y+ VQP+IRGRNVY+QFSSHQELTT EQ+ Q R GD+ PNRILLVTIHH+LYPITVE
Sbjct: 61 YSTVQPSIRGRNVYIQFSSHQELTTTEQSGQARRNGDQDSQPNRILLVTIHHLLYPITVE 120
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
VLHQVFSPHGFVEKIV FQKS G QA +QY R +A+ A ++LQGRNIYDGCCQLDIQFS
Sbjct: 121 VLHQVFSPHGFVEKIVIFQKS-GLQAFVQYSSRQNAIQASNTLQGRNIYDGCCQLDIQFS 179
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGR-PSQSGYSEAG-------VAFPQM------- 220
NL ELQVNYNNER+RDFTNP+LP+EQK R P+QS + EAG V+ M
Sbjct: 180 NLPELQVNYNNERTRDFTNPSLPSEQKHRLPAQS-FGEAGGMYGIQPVSLHHMVSAQAMG 238
Query: 221 --------ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
+NA+AI AFGG LP G+ G NDRCTVLV+NLN ++IDEDKLFNLFS+YGNI
Sbjct: 239 LNSLQMPVSNASAIMEAFGGVLPRGVMGNNDRCTVLVANLNPEKIDEDKLFNLFSIYGNI 298
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYM 332
+RIKLLRNKPDHAL+QM DG QAELAV+FLKGALLFGKRLEVNFSKHP I +D+ +Y
Sbjct: 299 LRIKLLRNKPDHALIQMADGLQAELAVNFLKGALLFGKRLEVNFSKHPQIHPSSDSIDYS 358
Query: 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGK 392
S LNRFNRN AKNYRYCCSPTKMIH+S+LP DVTE++++SHLEEHGSI+N+KLFE NGK
Sbjct: 359 GSKLNRFNRNLAKNYRYCCSPTKMIHVSSLPGDVTEDDVISHLEEHGSIINSKLFEANGK 418
Query: 393 KQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
KQAL+LF EEQATEALVCKHAS++ GS IR+SFSQLQSI
Sbjct: 419 KQALILFANEEQATEALVCKHASAIDGSTIRLSFSQLQSI 458
>gi|300681488|emb|CBH32582.1| RNA recognition domain containing protein,expressed [Triticum
aestivum]
Length = 439
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/443 (69%), Positives = 376/443 (84%), Gaps = 15/443 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPS+VIH+RNVGHEISE DLLQ+ QPFG + KLVMLR KNQAL+QM+D+ ++I+A+Q+
Sbjct: 1 MAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKLVMLRTKNQALVQMEDLSASISAIQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG---DEPNRILLVTIHHMLYPITVEVL 117
YT +QP++RGRNVY+Q+SSHQELTT +Q++ GR DEPNRILLVT+HHMLYP+TVEVL
Sbjct: 61 YTTIQPSVRGRNVYLQYSSHQELTT-DQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVL 119
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
HQVFSP+GFVEKIVTFQK+AGFQALIQ+Q R SA+ A +L GRNIYDGCCQLDIQ+SNL
Sbjct: 120 HQVFSPYGFVEKIVTFQKTAGFQALIQFQSRQSAIQAAGALHGRNIYDGCCQLDIQYSNL 179
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA--------GVAFPQMANAAAIAAA 229
ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY++ G A+ Q AA IAAA
Sbjct: 180 SELQVHYNNDRSRDFTNPSLPTEQRPRSSQLGYNDPSLFGFQQPGAAYGQ---AAVIAAA 236
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
FGG LPPG+TGTNDRCT++VSNLNSD+ID DKLFNLFS+YGNI+RIK+LRNKPDHALVQM
Sbjct: 237 FGGTLPPGVTGTNDRCTLIVSNLNSDKIDADKLFNLFSIYGNIVRIKVLRNKPDHALVQM 296
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRY 349
DG QAELA+H+LKGA+L G++LEVNFSK+P+IT D H+Y SNLNRFN N AKNYR+
Sbjct: 297 ADGLQAELAIHYLKGAMLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYRH 356
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
CC+PTK+IH+S L +++E+ I+ HL EHG+I+ +KLFE +GK QALV FE+EE+ATEAL
Sbjct: 357 CCAPTKIIHISALSPEISEDAILEHLGEHGTIIKSKLFEASGKTQALVQFESEEEATEAL 416
Query: 410 VCKHASSLGGSIIRISFSQLQSI 432
VCKHAS L GS IRISFSQ+ +I
Sbjct: 417 VCKHASKLEGSTIRISFSQMHNI 439
>gi|357133525|ref|XP_003568375.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Brachypodium distachyon]
Length = 444
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/445 (71%), Positives = 378/445 (84%), Gaps = 14/445 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKVIH+RNVGHEI+E DLLQL QPFG ++K+VMLRAKNQALLQMQD+ S+++ALQ+
Sbjct: 1 MAEASKVIHIRNVGHEIAEADLLQLLQPFGAVSKIVMLRAKNQALLQMQDIHSSVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
YT VQP++RGRN+Y+QFSSHQELTT +Q++ GR EPNRILL TIHHM+YPITVEV
Sbjct: 61 YTTVQPSVRGRNIYMQFSSHQELTT-DQSSHGRNSDQDSEPNRILLATIHHMIYPITVEV 119
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +G+VEKIVTF KSAGFQALIQYQ R AV A +L GRNIYDGCCQLDIQ+SN
Sbjct: 120 LHQVFKAYGYVEKIVTFNKSAGFQALIQYQSRQEAVEAFGALHGRNIYDGCCQLDIQYSN 179
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG---------VAFPQMANAAAIA 227
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY + G + QM AA IA
Sbjct: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRSSQQGYPDPGGLYAFQQPGAPYAQMGRAAMIA 239
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
AAFGG LPPG+TGTN+RCT++VSNLN+D+I+EDKLFNLFSLYGNI+RIK+LRNKPDHALV
Sbjct: 240 AAFGGTLPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKVLRNKPDHALV 299
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 347
+M DGFQAELAVH+LKGA+LFG +LEVN+SK+P IT D HEY NS+LNRFN N KNY
Sbjct: 300 EMADGFQAELAVHYLKGAMLFGNKLEVNYSKYPTITPAPDAHEYTNSSLNRFNSNVVKNY 359
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R+CC+PTKMIH+S LPQD++E+ I++H+ EHGS+V TKLFE+NGK+QALVLFETEE+ATE
Sbjct: 360 RHCCAPTKMIHISALPQDISEDTILTHVSEHGSVVGTKLFEVNGKRQALVLFETEEEATE 419
Query: 408 ALVCKHASSLGGSIIRISFSQLQSI 432
ALV KHASSL G+ IRISFSQ+QSI
Sbjct: 420 ALVSKHASSLEGNTIRISFSQMQSI 444
>gi|294460075|gb|ADE75620.1| unknown [Picea sitchensis]
Length = 471
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/471 (68%), Positives = 383/471 (81%), Gaps = 36/471 (7%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKV+H+RNVGHEISENDLL L Q FG++TKLVMLRAKNQALLQM V +AI+ALQ+
Sbjct: 1 MAEPSKVLHIRNVGHEISENDLLNLVQQFGLVTKLVMLRAKNQALLQMHHVSAAIDALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--GDE---PNRILLVTIHHMLYPITVE 115
Y+ VQP++RGRNVY+QFSSHQELTT+E R GD+ PNRILLVTIHH+L+PITVE
Sbjct: 61 YSTVQPSVRGRNVYIQFSSHQELTTVEHPTHARQSGDQDSQPNRILLVTIHHLLFPITVE 120
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
VLHQVFSP GFVEKIVTFQKSAG QALIQY + +AV A+++LQGRNIYDGCCQLDIQFS
Sbjct: 121 VLHQVFSPCGFVEKIVTFQKSAGLQALIQYTSQQNAVQAKNNLQGRNIYDGCCQLDIQFS 180
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGR-PSQ----SGYSEAGVAF------------- 217
NL+ LQV+Y NERSRDFTNP+LP+EQK R P+Q S + G +
Sbjct: 181 NLNGLQVHYINERSRDFTNPSLPSEQKDRIPAQANAMSAFGGTGSIYGIQPTGSRPVPFQ 240
Query: 218 -----PQMANAAAIAAA--------FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
P + N+ + FGG LPPGITGTNDRCT+LVSNLN+++IDEDKLFN
Sbjct: 241 QVGAQPMVLNSLQMPVGTAAAIAAAFGGMLPPGITGTNDRCTILVSNLNTEKIDEDKLFN 300
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ 324
LFS+YGNI+RIK+LRNKPDHAL+QMGDGFQAELAVH+LKGA+LF KR+EVN+SKHP IT
Sbjct: 301 LFSVYGNIMRIKILRNKPDHALIQMGDGFQAELAVHYLKGAMLFDKRMEVNYSKHPQITP 360
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
DT +Y +SNLNRFNRN KNYRYCC+PTKMIH+S+LP DVTE+EI+SHLE HG++V++
Sbjct: 361 APDTRDYSSSNLNRFNRNVVKNYRYCCAPTKMIHVSSLPPDVTEDEIISHLEPHGNVVDS 420
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 435
KLFE+NGKKQALVLFE EEQ+TEALV KHA+++ GS IRISFSQLQSI+ +
Sbjct: 421 KLFEVNGKKQALVLFENEEQSTEALVSKHATTIDGSTIRISFSQLQSIQSS 471
>gi|218189437|gb|EEC71864.1| hypothetical protein OsI_04570 [Oryza sativa Indica Group]
Length = 443
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/444 (69%), Positives = 372/444 (83%), Gaps = 13/444 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIH+RNVGHEISE++LLQ+ QPFG + KLVMLRAKNQAL+QM+D+ SA+N +Q+
Sbjct: 1 MAEPSKVIHIRNVGHEISESELLQVVQPFGTVAKLVMLRAKNQALVQMEDLASAVNVIQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG---DEPNRILLVTIHHMLYPITVEVL 117
Y +QP++RGRNVY+Q+SSHQELTT +Q++ GR +EPNRILLVTIHHMLYPIT+EVL
Sbjct: 61 YNTIQPSVRGRNVYLQYSSHQELTT-DQSSHGRNPDQEEPNRILLVTIHHMLYPITIEVL 119
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
HQVFSP+GFVEKIVTFQKSAGFQ LIQYQ R SA+ A +L GRNIYDGCCQLDIQ+SNL
Sbjct: 120 HQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYDGCCQLDIQYSNL 179
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQS---------GYSEAGVAFPQMANAAAIAA 228
ELQV+YNN+RSRDFTNP+LP EQ+ R SQ G+ + G + QM+ AA IAA
Sbjct: 180 SELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQMSKAAMIAA 239
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGG LPPG++G NDRCT+LVSNLN+D+IDEDKLFNLFS+YGNI+RIK+L+NKPDHAL+Q
Sbjct: 240 AFGGTLPPGVSGINDRCTLLVSNLNTDKIDEDKLFNLFSMYGNIVRIKILKNKPDHALIQ 299
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
M DG QAELAV +LKGA+LFGK+LEVN+SK+P +T D +Y S+LNRFN N KNYR
Sbjct: 300 MADGLQAELAVLYLKGAMLFGKKLEVNYSKYPTVTADPDARDYSTSHLNRFNSNVVKNYR 359
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
+CC+PTKMIH+S LPQD+TE+ I S + EHG+I N++LFE NGK QALVLFE+ E+ATEA
Sbjct: 360 HCCAPTKMIHISALPQDITEDTIHSLVGEHGTIANSRLFETNGKTQALVLFESVEEATEA 419
Query: 409 LVCKHASSLGGSIIRISFSQLQSI 432
LV KHAS L + IRISFSQ+Q+I
Sbjct: 420 LVEKHASKLDRTNIRISFSQMQNI 443
>gi|115441273|ref|NP_001044916.1| Os01g0867800 [Oryza sativa Japonica Group]
gi|113534447|dbj|BAF06830.1| Os01g0867800 [Oryza sativa Japonica Group]
gi|215697244|dbj|BAG91238.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 439
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/444 (68%), Positives = 368/444 (82%), Gaps = 17/444 (3%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIH+RNVGHEISE++LLQ+ QPFG + KLVMLRAKNQ M+D+ SA+N +Q+
Sbjct: 1 MAEPSKVIHIRNVGHEISESELLQVVQPFGTVAKLVMLRAKNQ----MEDLASAVNVIQY 56
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG---DEPNRILLVTIHHMLYPITVEVL 117
Y +QP++RGRNVY+Q+SSHQELTT +Q++ GR +EPNRILLVTIHHMLYPIT+EVL
Sbjct: 57 YNTIQPSVRGRNVYLQYSSHQELTT-DQSSHGRNPDQEEPNRILLVTIHHMLYPITIEVL 115
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
HQVFSP+GFVEKIVTFQKSAGFQ LIQYQ R SA+ A +L GRNIYDGCCQLDIQ+SNL
Sbjct: 116 HQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYDGCCQLDIQYSNL 175
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQS---------GYSEAGVAFPQMANAAAIAA 228
ELQV+YNN+RSRDFTNP+LP EQ+ R SQ G+ + G + QM+ AA IAA
Sbjct: 176 SELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQMSKAAMIAA 235
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGG LPPG++G NDRCT+LVSNLN+D+IDEDKLFNLFS+YGNI+RIK+L+NKPDHAL+Q
Sbjct: 236 AFGGTLPPGVSGINDRCTLLVSNLNTDKIDEDKLFNLFSMYGNIVRIKILKNKPDHALIQ 295
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
M DG QAELAV +LKGA+LFGK+LEVN+SK+P +T D +Y S+LNRFN N KNYR
Sbjct: 296 MADGLQAELAVLYLKGAMLFGKKLEVNYSKYPTVTADPDARDYSTSHLNRFNSNVVKNYR 355
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
+CC+PTKMIH+S LPQD+TE+ I S + EHG+I N++LFE NGK QALVLFE+ E+ATEA
Sbjct: 356 HCCAPTKMIHISALPQDITEDTIHSLVGEHGTIANSRLFETNGKTQALVLFESVEEATEA 415
Query: 409 LVCKHASSLGGSIIRISFSQLQSI 432
LV KHAS L + IRISFSQ+Q+I
Sbjct: 416 LVEKHASKLDRTNIRISFSQMQNI 439
>gi|302782650|ref|XP_002973098.1| hypothetical protein SELMODRAFT_173175 [Selaginella moellendorffii]
gi|302790002|ref|XP_002976769.1| hypothetical protein SELMODRAFT_105564 [Selaginella moellendorffii]
gi|300155807|gb|EFJ22438.1| hypothetical protein SELMODRAFT_105564 [Selaginella moellendorffii]
gi|300158851|gb|EFJ25472.1| hypothetical protein SELMODRAFT_173175 [Selaginella moellendorffii]
Length = 436
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/438 (68%), Positives = 365/438 (83%), Gaps = 8/438 (1%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKV+HVRNVG EI+E+DLL L QPFG ++K+V+LR KNQALLQMQDV +AI+A+Q+
Sbjct: 1 MTEPSKVLHVRNVGQEITESDLLGLVQPFGSVSKMVLLRTKNQALLQMQDVNAAISAMQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR---GDE---PNRILLVTIHHMLYPITV 114
YT+VQP++RGRNVY+QFSSHQELTT +Q Q R GD+ PNRILLVTIHH LYPITV
Sbjct: 61 YTSVQPSVRGRNVYIQFSSHQELTTSDQATQPRRPAGDQDQQPNRILLVTIHHPLYPITV 120
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VLHQVF+PHG VEKIVTFQKSAG QALIQY + SAV A+S LQGRNIYDGCC LDIQF
Sbjct: 121 DVLHQVFNPHGHVEKIVTFQKSAGLQALIQYNNQQSAVYAKSLLQGRNIYDGCCTLDIQF 180
Query: 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL 234
SNL ELQVN+NNER+RD+TN +LP E GR SQ+ + P +AAA AAA GG L
Sbjct: 181 SNLQELQVNFNNERTRDYTNSSLPNE-PGR-SQNPPGGNNMMVPMTPSAAAAAAASGGTL 238
Query: 235 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
PPG+TGTN+RCT+LVSNL +++D DKLFNLFS YGNIIRIK+L NKPDHAL+QMGDG+Q
Sbjct: 239 PPGVTGTNERCTLLVSNLAPEKVDADKLFNLFSNYGNIIRIKMLHNKPDHALIQMGDGYQ 298
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
AELAV++L+G +LF KR+EVNFSKH I DTH+Y +SNLNRFNRNA KNY+YCCSPT
Sbjct: 299 AELAVYYLRGTMLFEKRMEVNFSKHSQINPSQDTHDYSSSNLNRFNRNALKNYKYCCSPT 358
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
KMIH+S+LP D+TE ++++HL HG+I+N K+FE NGKKQALV F+ EEQATEALVCKHA
Sbjct: 359 KMIHVSSLPTDITEVDLMNHLSPHGNILNVKIFEANGKKQALVHFDNEEQATEALVCKHA 418
Query: 415 SSLGGSIIRISFSQLQSI 432
+ + S +R++FS+L +I
Sbjct: 419 TVVKKSTVRLAFSKLSNI 436
>gi|168017642|ref|XP_001761356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687362|gb|EDQ73745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 441
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 307/442 (69%), Positives = 363/442 (82%), Gaps = 11/442 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKV+H+RNVG E++E+DLLQL Q FGV+ K+VMLRAKNQALLQMQDVPSAIN +Q+
Sbjct: 1 MTEPSKVLHIRNVGPEVAESDLLQLAQSFGVVQKVVMLRAKNQALLQMQDVPSAINVMQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE------PNRILLVTIHHMLYPITV 114
YT VQP++RGRNVY+QFSSH+ELTT +QN Q R PNRILL+TIH+ LYPITV
Sbjct: 61 YTTVQPSVRGRNVYMQFSSHKELTTPDQNGQTRRLPAEQELLPNRILLITIHNPLYPITV 120
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VLHQVFSPHGFVEKIVTF KSAG QAL+QY +PSAV AR++LQGRNIYDGCC LDIQ+
Sbjct: 121 DVLHQVFSPHGFVEKIVTFTKSAGLQALLQYASQPSAVQARTTLQGRNIYDGCCTLDIQY 180
Query: 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS----EAGVAFPQMANAAAIAAAF 230
SNL ELQVNYNNER+RDFTN LP+EQ RP SG + + M A+A AAAF
Sbjct: 181 SNLQELQVNYNNERTRDFTNAALPSEQ-SRPGNSGNNIMVLLGCLYLVAMGGASAAAAAF 239
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
GG LPPGITGTNDR T+LVSNL ++ID D+LFNLFS YGNI+RIK+L NKPDHAL+QMG
Sbjct: 240 GGVLPPGITGTNDRSTLLVSNLVPEKIDADRLFNLFSNYGNIVRIKILHNKPDHALIQMG 299
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
DGFQAELA ++LKG LFGKR++VNFSKH I DT ++ +S LNRFNRNAAKNYRYC
Sbjct: 300 DGFQAELAFNYLKGVTLFGKRMDVNFSKHAQINPSPDTSDFSSSPLNRFNRNAAKNYRYC 359
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
C+PTKMIH+S+LP D+ E+I SHL HG++VN K+FE NGKKQALVLFE+EEQATEALV
Sbjct: 360 CAPTKMIHVSSLPADIALEDITSHLSAHGTVVNAKIFESNGKKQALVLFESEEQATEALV 419
Query: 411 CKHASSLGGSIIRISFSQLQSI 432
CKHA+ L + IR++FS+L S+
Sbjct: 420 CKHATQLQSNTIRLAFSKLASV 441
>gi|293335109|ref|NP_001169809.1| uncharacterized protein LOC100383701 [Zea mays]
gi|224031787|gb|ACN34969.1| unknown [Zea mays]
Length = 397
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/398 (71%), Positives = 340/398 (85%), Gaps = 14/398 (3%)
Query: 48 MQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLV 103
M+D+ ++++ALQ+YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR EPNRILLV
Sbjct: 1 MEDIHASVSALQYYTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQESEPNRILLV 59
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
TIHHM+YPITVEVLHQVF +GFVEKIVTFQKSAGFQALIQ+ R AV A SL GRNI
Sbjct: 60 TIHHMIYPITVEVLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNI 119
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY---------SEAG 214
YDGCCQLDIQ+SNL ELQV+YNN+RSRDFTNP+LP EQ+ R SQ Y +AG
Sbjct: 120 YDGCCQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQAYPDPANLYAFQQAG 179
Query: 215 VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR 274
++ QM AA IAAAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+R
Sbjct: 180 ASYAQMGRAAMIAAAFGGTLPHGVTGTNERCTLIVSNLNNDKIDEDKLFNLFSLYGNIVR 239
Query: 275 IKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNS 334
IK+LRNKPDHALV+M DG QAELAVH+LKGA+LFGK+LEVN+SK+PNIT D H+Y+NS
Sbjct: 240 IKVLRNKPDHALVEMADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNS 299
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
+LNRFN N KNYR+CCSPTKMIH+S LPQ+++EE I++HL EHG++VNTKLFE+NGK+Q
Sbjct: 300 SLNRFNSNMVKNYRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQ 359
Query: 395 ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
ALVLFETEE ATEALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 360 ALVLFETEEAATEALVSKHASTLEGNTIRISFSQMQSI 397
>gi|168012956|ref|XP_001759167.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689480|gb|EDQ75851.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/438 (65%), Positives = 338/438 (77%), Gaps = 34/438 (7%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKV+H+RNVG EI+E QALLQMQD+PSAIN +Q+
Sbjct: 1 MTEPSKVLHIRNVGPEIAE-----------------------QALLQMQDIPSAINLMQY 37
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE------PNRILLVTIHHMLYPITV 114
YT VQP++RGRNVY+QFSSH ELTT +Q+ Q R PNRILL+TIH+ LYPITV
Sbjct: 38 YTTVQPSVRGRNVYMQFSSHPELTTPDQSGQTRRLPAEQELLPNRILLITIHNPLYPITV 97
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VLHQVFSPHGFVEKIVTF KSAG QAL+QY + SAV ARS+LQGRNIYDGCC LDIQ+
Sbjct: 98 DVLHQVFSPHGFVEKIVTFTKSAGLQALLQYASQSSAVQARSTLQGRNIYDGCCTLDIQY 157
Query: 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL 234
SNL ELQVNYNNER+RDFTN LP+EQ RP G + M A+A AAAFGG L
Sbjct: 158 SNLQELQVNYNNERTRDFTNAALPSEQ-SRPGNPGNN----IMVAMGGASAAAAAFGGVL 212
Query: 235 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
PPGITGTNDR T+LVSNL ++ID D+LFNLFS YGNI+RIK+L NKPDHAL+QMGDGFQ
Sbjct: 213 PPGITGTNDRSTLLVSNLVPEKIDADRLFNLFSNYGNIVRIKILHNKPDHALIQMGDGFQ 272
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
AELA ++LKG LFGKR++VNFSKH I DT ++ +S LNRFNRNAAKNYRYCC+PT
Sbjct: 273 AELAFNYLKGVTLFGKRMDVNFSKHAQINPSPDTSDFSSSPLNRFNRNAAKNYRYCCAPT 332
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
KMIH+S+LP D+ E+I SHL HG++ N K+FE NGKKQAL+LFE+EEQATEALVCKHA
Sbjct: 333 KMIHVSSLPADIALEDITSHLSAHGTVANAKVFESNGKKQALMLFESEEQATEALVCKHA 392
Query: 415 SSLGGSIIRISFSQLQSI 432
S L + IR++FS+L S+
Sbjct: 393 SQLQSNTIRLAFSKLASV 410
>gi|55733800|gb|AAV59307.1| putative polypyrimidine track-binding protein [Oryza sativa
Japonica Group]
Length = 389
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/436 (62%), Positives = 332/436 (76%), Gaps = 51/436 (11%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIH+RNVGHEI+E DLLQL QPFG ++K+ ALLQMQD+ ++++ALQ+
Sbjct: 1 MAEPSKVIHIRNVGHEIAEADLLQLLQPFGNVSKI--------ALLQMQDLHNSVSALQY 52
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITVEV 116
Y+ VQP++RGRNVY+QFSSHQELTT +QN+ GR EPNRILLVTIHHM+YPITVEV
Sbjct: 53 YSTVQPSVRGRNVYMQFSSHQELTT-DQNSHGRNSDQESEPNRILLVTIHHMMYPITVEV 111
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +G+VEKIVTFQKSAGFQALIQYQ A+ A +L G
Sbjct: 112 LHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHG---------------- 155
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPP 236
F P + R + G S ++ QM AA I AAFGG LPP
Sbjct: 156 ---------------FHKPIIAY----RTASKGLS---ASYAQMGRAAMITAAFGGTLPP 193
Query: 237 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 296
G+TGTN+RCT++VSNLN+D+I+EDKLFNLFSLYGNI+RIK+LRNKPDHALV+M DGFQAE
Sbjct: 194 GVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKILRNKPDHALVEMADGFQAE 253
Query: 297 LAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
LAVH+LKGA+LF K+LEVN+SK+PNIT D H+Y S+LNRFN N KNYR+CC+PTKM
Sbjct: 254 LAVHYLKGAVLFAKKLEVNYSKYPNITSAPDAHDYTTSSLNRFNSNVIKNYRHCCAPTKM 313
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
IH+S LPQ++TE+ I++H+ EHGS+VNTKLFE+NGK+QAL+ FE+EE+ATEALV KHA+S
Sbjct: 314 IHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATEALVSKHATS 373
Query: 417 LGGSIIRISFSQLQSI 432
L G+ IRISFSQ+QSI
Sbjct: 374 LEGNTIRISFSQMQSI 389
>gi|296082547|emb|CBI21552.3| unnamed protein product [Vitis vinifera]
Length = 374
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/319 (84%), Positives = 286/319 (89%), Gaps = 16/319 (5%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
MTEPSKVIHVRNVG EISENDLLQL PFGV+TKLVMLRAKNQALLQMQDV SA++ALQ+
Sbjct: 1 MTEPSKVIHVRNVGPEISENDLLQLVHPFGVVTKLVMLRAKNQALLQMQDVASAVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR-GDE---PNRILLVTIHHMLYPITVEV 116
Y NVQP++RGRNVYVQFSSHQELTTM+QN+QGR GD+ PNRILLVTIHH+LYPITVEV
Sbjct: 61 YANVQPSVRGRNVYVQFSSHQELTTMDQNSQGRKGDQDAQPNRILLVTIHHLLYPITVEV 120
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVFSPHGFVEKIVTFQKSAGFQALIQYQ R SAV A ++LQGRNIYDGCCQLDIQFSN
Sbjct: 121 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYDGCCQLDIQFSN 180
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAA 224
L ELQVNYNNERSRDFTNP+LP+EQKGR SQSGY + G VAFPQM NA
Sbjct: 181 LTELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDGGGMYALQPPGARPVAFPQMGNAT 240
Query: 225 AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 284
AIAAAFGGGLPPGI+GTNDRCTVLVSNLN D IDEDKLFNLFSLYGNI+RIKLLR+KPDH
Sbjct: 241 AIAAAFGGGLPPGISGTNDRCTVLVSNLNPDEIDEDKLFNLFSLYGNIVRIKLLRSKPDH 300
Query: 285 ALVQMGDGFQAELAVHFLK 303
ALVQMGDGFQAELAVHFLK
Sbjct: 301 ALVQMGDGFQAELAVHFLK 319
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA--LLFGKRLEV 314
I E+ L L +G + ++ +LR K + AL+QM D A A+ + + G+ + V
Sbjct: 17 ISENDLLQLVHPFGVVTKLVMLRAK-NQALLQMQDVASAVSALQYYANVQPSVRGRNVYV 75
Query: 315 NFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 374
FS H +T T + NS + +++A N + IH P +T E +
Sbjct: 76 QFSSHQELT----TMD-QNSQGRKGDQDAQPNRILLVT----IHHLLYP--ITVEVLHQV 124
Query: 375 LEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL--GGSIIRISFSQLQSI 432
HG + F+ + QAL+ +++ + A A+ ++ G + I FS L +
Sbjct: 125 FSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYDGCCQLDIQFSNLTEL 184
Query: 433 REN 435
+ N
Sbjct: 185 QVN 187
>gi|357497747|ref|XP_003619162.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355494177|gb|AES75380.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 354
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/315 (81%), Positives = 279/315 (88%), Gaps = 13/315 (4%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKVIHVRNVGHEISENDLLQLFQPFGV+TKLVMLRAKNQAL+QMQDV SA +A+QF
Sbjct: 1 MAEQSKVIHVRNVGHEISENDLLQLFQPFGVVTKLVMLRAKNQALVQMQDVASADSAIQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y N QP+IRGRNVYVQFSSH+ELTTM+QN QGR DEPNRILLVT+H +LYP+TV+VL QV
Sbjct: 61 YINSQPSIRGRNVYVQFSSHRELTTMDQN-QGREDEPNRILLVTVHQVLYPMTVDVLQQV 119
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSPHGFVEKIVTFQKSAGFQALIQY+ R SAV AR +LQGRN+YDGCCQLDIQFSNLDEL
Sbjct: 120 FSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARGALQGRNVYDGCCQLDIQFSNLDEL 179
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------VAFPQMANAAAIAA 228
QVNYNN+RSRDFTNPNLP +QKGRPSQ+GY +AG F QM NA AI A
Sbjct: 180 QVNYNNDRSRDFTNPNLPTDQKGRPSQAGYGDAGNYGGIQGSGPRQAGFSQMGNAQAIEA 239
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
AFGG LPPGITGTN+RCT+LV+NLN DRIDEDKLFNLFS+YGNI+RIKLLRNKPDHALVQ
Sbjct: 240 AFGGDLPPGITGTNERCTILVTNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQ 299
Query: 289 MGDGFQAELAVHFLK 303
MGDGFQAELAVHFLK
Sbjct: 300 MGDGFQAELAVHFLK 314
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL--LFGKRLEV 314
I E+ L LF +G + ++ +LR K + ALVQM D A+ A+ F + + G+ + V
Sbjct: 17 ISENDLLQLFQPFGVVTKLVMLRAK-NQALVQMQDVASADSAIQFYINSQPSIRGRNVYV 75
Query: 315 NFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ---DVTEEEI 371
FS H +T M+ N R + P +++ L T+ Q +T + +
Sbjct: 76 QFSSHRELTT-------MDQNQGRED-----------EPNRIL-LVTVHQVLYPMTVDVL 116
Query: 372 VSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL--GGSIIRISFSQL 429
HG + F+ + QAL+ +ET + A A ++ G + I FS L
Sbjct: 117 QQVFSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARGALQGRNVYDGCCQLDIQFSNL 176
Query: 430 QSIREN 435
++ N
Sbjct: 177 DELQVN 182
>gi|357497749|ref|XP_003619163.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355494178|gb|AES75381.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 318
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/279 (79%), Positives = 245/279 (87%), Gaps = 13/279 (4%)
Query: 37 MLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE 96
MLRAKNQAL+QMQDV SA +A+QFY N QP+IRGRNVYVQFSSH+ELTTM+QN QGR DE
Sbjct: 1 MLRAKNQALVQMQDVASADSAIQFYINSQPSIRGRNVYVQFSSHRELTTMDQN-QGREDE 59
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PNRILLVT+H +LYP+TV+VL QVFSPHGFVEKIVTFQKSAGFQALIQY+ R SAV AR
Sbjct: 60 PNRILLVTVHQVLYPMTVDVLQQVFSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARG 119
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG-- 214
+LQGRN+YDGCCQLDIQFSNLDELQVNYNN+RSRDFTNPNLP +QKGRPSQ+GY +AG
Sbjct: 120 ALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTDQKGRPSQAGYGDAGNY 179
Query: 215 ----------VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
F QM NA AI AAFGG LPPGITGTN+RCT+LV+NLN DRIDEDKLFN
Sbjct: 180 GGIQGSGPRQAGFSQMGNAQAIEAAFGGDLPPGITGTNERCTILVTNLNPDRIDEDKLFN 239
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
LFS+YGNI+RIKLLRNKPDHALVQMGDGFQAELAVHFLK
Sbjct: 240 LFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLK 278
>gi|413945518|gb|AFW78167.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 213
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 161/213 (75%), Positives = 192/213 (90%)
Query: 220 MANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR 279
M AA IAAAFGG LP G+TGTN+RCT++VSNLN+D+IDEDKLFNLFSLYGNI+RIK+LR
Sbjct: 1 MGRAAMIAAAFGGTLPHGVTGTNERCTLIVSNLNNDKIDEDKLFNLFSLYGNIVRIKVLR 60
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRF 339
NKPDHALV+M DG QAELAVH+LKGA+LFGK+LEVN+SK+PNIT D H+Y+NS+LNRF
Sbjct: 61 NKPDHALVEMADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRF 120
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
N N KNYR+CCSPTKMIH+S LPQ+++EE I++HL EHG++VNTKLFE+NGK+QALVLF
Sbjct: 121 NSNMVKNYRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLF 180
Query: 400 ETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
ETEE ATEALV KHAS+L G+ IRISFSQ+QSI
Sbjct: 181 ETEEAATEALVSKHASTLEGNTIRISFSQMQSI 213
>gi|294461076|gb|ADE76105.1| unknown [Picea sitchensis]
Length = 218
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 159/204 (77%), Positives = 188/204 (92%)
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
FGG LPPGITGTNDRCT+LVSNLN+++IDEDKLFNLFS+YGNI+RIK+LRNKPDHAL+QM
Sbjct: 13 FGGMLPPGITGTNDRCTILVSNLNTEKIDEDKLFNLFSVYGNIMRIKILRNKPDHALIQM 72
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRY 349
GDGFQAELAVH+LKGA+LF KR+EVN+SKHP IT DT +Y +SNLNRFNRN KNYRY
Sbjct: 73 GDGFQAELAVHYLKGAMLFDKRMEVNYSKHPQITPAPDTRDYSSSNLNRFNRNVVKNYRY 132
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
CC+PTKMIH+S+LP DVTE+EI+SHLE HG++V++KLFE+NGKKQALVLFE EEQ+TEAL
Sbjct: 133 CCAPTKMIHVSSLPPDVTEDEIISHLEPHGNVVDSKLFEVNGKKQALVLFENEEQSTEAL 192
Query: 410 VCKHASSLGGSIIRISFSQLQSIR 433
V KHA+++ GS IRISFSQLQSI+
Sbjct: 193 VSKHATTIDGSTIRISFSQLQSIQ 216
>gi|413949172|gb|AFW81821.1| hypothetical protein ZEAMMB73_476847 [Zea mays]
Length = 339
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/258 (67%), Positives = 205/258 (79%), Gaps = 14/258 (5%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFG+++K+VMLRAKNQALLQM+D+ ++++ALQ+
Sbjct: 86 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGMVSKIVMLRAKNQALLQMEDLHASVSALQY 145
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR----GDEPNRILLVTIHHMLYPITVEV 116
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR G EPNRILLVTIHHM+YPITVE+
Sbjct: 146 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQGSEPNRILLVTIHHMIYPITVEI 204
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
LHQVF +GFVEKIVTFQKSAGFQALIQY R AV A SL GRNIYDGCCQLDIQ+SN
Sbjct: 205 LHQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSN 264
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPP 236
L ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY + AN A A +P
Sbjct: 265 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYLDP-------ANLYAFQQAGAFAIPD 317
Query: 237 GITGTNDRCTVLVSNLNS 254
G G ND C + N S
Sbjct: 318 G-EGCND-CGCIWWNFTS 333
>gi|302789994|ref|XP_002976765.1| hypothetical protein SELMODRAFT_443293 [Selaginella moellendorffii]
gi|300155803|gb|EFJ22434.1| hypothetical protein SELMODRAFT_443293 [Selaginella moellendorffii]
Length = 451
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/433 (43%), Positives = 272/433 (62%), Gaps = 29/433 (6%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PSKV+ R EI++ +L L +PFG I K +++R+ ALL+M DV A + ++ +
Sbjct: 47 SAPSKVLFFRTQADEITQEELTDLVKPFGSINKFIVMRSGRDALLEMGDVEEARSVIKHF 106
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q +RG+ V V++SS Q+L+ E E +R+LL IH+ LY + V++LHQVF
Sbjct: 107 SEDQALLRGKEVQVEYSSRQKLSESENPKV----ETSRVLLAIIHNPLYQMNVDILHQVF 162
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
SPHG +EKIV F K+A QA I ++ +A A+S+LQGR I+DGCC+LDI+FS
Sbjct: 163 SPHGNIEKIVIFHKAA-VQAFIVFESDEAAAAAKSALQGRQIFDGCCKLDIKFS------ 215
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPS-QSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
D+TN +LP + + + S Q+ AG AF M + G LP G+TG
Sbjct: 216 --------MDYTNNSLPGDSQSKTSPQASILGAGTAFSTMKQGSV---PLSGVLPFGVTG 264
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ND+CT+LVSNL+ +R DE+KLFNLFS YG ++RIK+ N ALVQ+ DG QAELA++
Sbjct: 265 SNDKCTLLVSNLH-ERTDEEKLFNLFSGYGRVLRIKMFEN-AKQALVQLADGIQAELALN 322
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA L G +E++FSKH N + T ++ NRFN KN CC P+K++H+S
Sbjct: 323 FLKGAPLLGSAMEISFSKH-NTIRHPRTRDFTMDPYNRFNSEYVKN---CCPPSKILHIS 378
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
+ +V E ++++ L HG I KLFE ++QALV F+T EQATEAL KH S L +
Sbjct: 379 NVSDEVEEGDLLNFLAPHGVIQRVKLFESTNRRQALVEFDTIEQATEALASKHRSKLKAT 438
Query: 421 IIRISFSQLQSIR 433
+RI+FS+ +IR
Sbjct: 439 SLRIAFSRYHAIR 451
>gi|300681487|emb|CBH32581.1| RNA recognition domain containing protein [Triticum aestivum]
Length = 277
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 196/233 (84%), Gaps = 4/233 (1%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPS+VIH+RNVGHEISE DLLQ+ QPFG + KLVMLR KNQAL+QM+D+ ++I+A+Q+
Sbjct: 1 MAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKLVMLRTKNQALVQMEDLSASISAIQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG---DEPNRILLVTIHHMLYPITVEVL 117
YT +QP++RGRNVY+Q+SSHQELTT +Q++ GR DEPNRILLVT+HHMLYP+TVEVL
Sbjct: 61 YTTIQPSVRGRNVYLQYSSHQELTT-DQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVL 119
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
HQVFSP+GFVEKIVTFQK+AGFQALIQ+Q R SA+ A +L GRNIYDGCCQLDIQ+SNL
Sbjct: 120 HQVFSPYGFVEKIVTFQKTAGFQALIQFQSRQSAIQAAGALHGRNIYDGCCQLDIQYSNL 179
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
ELQV+YNN+RSRDFTNP+LP EQ+ R SQ GY++ + Q A+ +F
Sbjct: 180 SELQVHYNNDRSRDFTNPSLPTEQRPRSSQLGYNDPSLFGFQQPGGKALQFSF 232
>gi|413933762|gb|AFW68313.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
Length = 251
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 170/254 (66%), Positives = 200/254 (78%), Gaps = 20/254 (7%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQA--LLQMQDVPSAINAL 58
M+EPSKVIH+RNVGHEI+E+DLLQL QPFGV++K+VMLRAKNQA LLQM+D+ ++++AL
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQAQTLLQMEDIHASVSAL 60
Query: 59 QFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----EPNRILLVTIHHMLYPITV 114
Q+YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR EPNRILLVTIHHM+YPITV
Sbjct: 61 QYYTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSDQESEPNRILLVTIHHMIYPITV 119
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
EVLHQVF +GFVEKIVTFQKSAGFQALIQ+ R AV A SL GRNIYDGCCQLDIQ+
Sbjct: 120 EVLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGCCQLDIQY 179
Query: 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL 234
SNL ELQV+YNN+RSRDFTNP+LP EQ+ R SQ A+P AN A A G
Sbjct: 180 SNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQ-------AYPDPANLYAFQQAGDG-- 230
Query: 235 PPGITGTNDRCTVL 248
G ND C +
Sbjct: 231 ----EGCNDCCRIW 240
>gi|302782656|ref|XP_002973101.1| hypothetical protein SELMODRAFT_99329 [Selaginella moellendorffii]
gi|300158854|gb|EFJ25475.1| hypothetical protein SELMODRAFT_99329 [Selaginella moellendorffii]
Length = 410
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 264/419 (63%), Gaps = 13/419 (3%)
Query: 19 ENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78
+ +L L +PFG I K +++R+ ALL+M DV A + ++ ++ Q +RG+ V V++S
Sbjct: 1 QEELTDLVKPFGSINKFIVMRSGKDALLEMGDVEEARSVIKHFSEDQALLRGKEVQVEYS 60
Query: 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG 138
S Q+L+ E E +R+LL IH+ LY + V++LHQVFSPHG +EKIV F K+A
Sbjct: 61 SRQKLSEPENPKV----EASRVLLAIIHNPLYQMNVDILHQVFSPHGNIEKIVIFHKAAA 116
Query: 139 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD-ELQVNYNN--ERSRDFTNP 195
QA I + +A A+S+LQGR I+DGCC+LDI+FS NY + +RD+TN
Sbjct: 117 VQAFIVFDSDEAAAAAKSALQGRQIFDGCCKLDIKFSIFAFRFLGNYKEPVKMNRDYTNN 176
Query: 196 NLPAEQKGRPS-QSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS 254
+LP + + + S Q+ AG AF M + G LP G+TG+ND+CT+LVSNL+
Sbjct: 177 SLPGDSQSKTSPQASILGAGTAFSTMKQGGFGSVPLSGVLPFGVTGSNDKCTLLVSNLHE 236
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
+ E+KLFNLFS YG ++RIK+ N ALVQ+ DG QAELA++FLKGA L G +E+
Sbjct: 237 VLVYEEKLFNLFSGYGRVLRIKMFEN-AKQALVQLADGVQAELALNFLKGAPLLGSAMEI 295
Query: 315 NFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 374
+FSKH N + T ++ NRFN KN CC P+K++H+S + +V E ++++
Sbjct: 296 SFSKH-NTIRHPRTRDFTMDPYNRFNSEYVKN---CCPPSKILHISNVSDEVEEGDLLNF 351
Query: 375 LEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433
L HG I KLFE ++QALV F+T EQATEAL KH S L + +RI+FS+ +IR
Sbjct: 352 LAPHGVIQRVKLFESTNRRQALVEFDTIEQATEALASKHRSKLKATSLRIAFSRYHAIR 410
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN--QALLQMQDVPSAINALQFY 61
PSK++H+ NV E+ E DLL P GVI ++ + + N QAL++ + A AL
Sbjct: 330 PSKILHISNVSDEVEEGDLLNFLAPHGVIQRVKLFESTNRRQALVEFDTIEQATEALA-- 387
Query: 62 TNVQPTIRGRNVYVQFSSHQEL 83
+ + ++ ++ + FS + +
Sbjct: 388 SKHRSKLKATSLRIAFSRYHAI 409
>gi|56784770|dbj|BAD81991.1| polypirimidine tract binding protein-like [Oryza sativa Japonica
Group]
Length = 213
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 148/213 (69%), Positives = 181/213 (84%)
Query: 220 MANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR 279
M+ AA IAAAFGG LPPG++G NDRCT+LVSNLN+D+IDEDKLFNLFS+YGNI+RIK+L+
Sbjct: 1 MSKAAMIAAAFGGTLPPGVSGINDRCTLLVSNLNTDKIDEDKLFNLFSMYGNIVRIKILK 60
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRF 339
NKPDHAL+QM DG QAELAV +LKGA+LFGK+LEVN+SK+P +T D +Y S+LNRF
Sbjct: 61 NKPDHALIQMADGLQAELAVLYLKGAMLFGKKLEVNYSKYPTVTADPDARDYSTSHLNRF 120
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
N N KNYR+CC+PTKMIH+S LPQD+TE+ I S + EHG+I N++LFE NGK QALVLF
Sbjct: 121 NSNVVKNYRHCCAPTKMIHISALPQDITEDTIHSLVGEHGTIANSRLFETNGKTQALVLF 180
Query: 400 ETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
E+ E+ATEALV KHAS L + IRISFSQ+Q+I
Sbjct: 181 ESVEEATEALVEKHASKLDRTNIRISFSQMQNI 213
>gi|222619594|gb|EEE55726.1| hypothetical protein OsJ_04208 [Oryza sativa Japonica Group]
Length = 309
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 163/321 (50%), Positives = 208/321 (64%), Gaps = 67/321 (20%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M EPSKVIH+RNVGHEISE++LLQ+ QPFG + KLVMLRAKNQAL+QM+D+ SA+N +Q+
Sbjct: 1 MAEPSKVIHIRNVGHEISESELLQVVQPFGTVAKLVMLRAKNQALVQMEDLASAVNVIQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Y +QP++RGRNVY+Q+SSHQELTT +Q++ GR + Q
Sbjct: 61 YNTIQPSVRGRNVYLQYSSHQELTT-DQSSHGRNPD----------------------QA 97
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
F P + + +QY+L + L EL
Sbjct: 98 FKPSYNISHVK-----------VQYKLMVLYI------------------------LSEL 122
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQS---------GYSEAGVAFPQMANAAAIAAAFG 231
QV+YNN+RSRDFTNP+LP EQ+ R SQ G+ + G + QM+ AA IAAAFG
Sbjct: 123 QVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQMSKAAMIAAAFG 182
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G LPPG++G NDRCT+LVSNLN+D+IDEDKLFNLFS+YGNI+RIK+L+NKPDHAL+QM D
Sbjct: 183 GTLPPGVSGINDRCTLLVSNLNTDKIDEDKLFNLFSMYGNIVRIKILKNKPDHALIQMAD 242
Query: 292 GFQAELAVHFLKGALLFGKRL 312
G QAELAV +LK + RL
Sbjct: 243 GLQAELAVLYLKHGTIANSRL 263
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 47/56 (83%)
Query: 377 EHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432
+HG+I N++LFE NGK QALVLFE+ E+ATEALV KHAS L + IRISFSQ+Q+I
Sbjct: 254 KHGTIANSRLFETNGKTQALVLFESVEEATEALVEKHASKLDRTNIRISFSQMQNI 309
>gi|302791034|ref|XP_002977284.1| hypothetical protein SELMODRAFT_54589 [Selaginella moellendorffii]
gi|300155260|gb|EFJ21893.1| hypothetical protein SELMODRAFT_54589 [Selaginella moellendorffii]
Length = 414
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 181/425 (42%), Positives = 255/425 (60%), Gaps = 15/425 (3%)
Query: 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQ 65
KV+H+RN+ +++E+DL++L +PFG ++ +V+LR NQA +QMQD+ A ++ + + Q
Sbjct: 1 KVLHLRNLAQDVAEDDLVELVRPFGRVSGIVLLRTWNQAFVQMQDIAKAFLVIRHFASRQ 60
Query: 66 PTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHG 125
T+RGR+V +QFS+ +EL E P ILLVT+ + +TV+ LHQ F G
Sbjct: 61 ATVRGRDVSIQFSARKELYPAEVRQAQETCSP--ILLVTMLDSVCHVTVDALHQTFKSFG 118
Query: 126 FVEKIVTFQKSAGF-QALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
+EKI F +S QALIQY A A+ L I +G C ++IQ+S DE++V
Sbjct: 119 PIEKIAIFPQSTVLAQALIQYASPRDAREAKHRLHKSKILNGSCTMEIQYSRTDEVRVAC 178
Query: 185 NNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDR 244
NN+ SRDFTN +LP+ + PS G A + P + G LP G T TN R
Sbjct: 179 NNDLSRDFTNSSLPSARF--PSILGAGNAHLMKPGVR--CRYRPGNSGLLPSGPT-TNQR 233
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
C +L+SNLN+ I+E KL+NLFS+YGN++RIK KP+ ALVQM DGFQA+LA+ LKG
Sbjct: 234 CVLLLSNLNTRMINEHKLYNLFSVYGNVLRIKGSFVKPELALVQMSDGFQADLAMACLKG 293
Query: 305 ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 364
LFGK++E+ S H + + TH Y NRF AK CC PTK+IH S L
Sbjct: 294 VSLFGKKMEITLSDH-SCLRHPHTHFYSWGTGNRFLYAYAKK---CCPPTKVIHASNLVP 349
Query: 365 DVTEEEIVSHLEEHGSIVNTKLF---EMNGKKQALVLFETEEQATEALVCKHASSLGGSI 421
D+ E ++V H EHG IV ++ E +++ALV F + E ATEA+ CK SSL G+
Sbjct: 350 DIQEVDVVRHFAEHGVIVKVEVSQAREGRKRREALVEFTSVESATEAIACKQWSSLRGAR 409
Query: 422 IRISF 426
R+ +
Sbjct: 410 ARLVY 414
>gi|302821012|ref|XP_002992171.1| hypothetical protein SELMODRAFT_44533 [Selaginella moellendorffii]
gi|300140097|gb|EFJ06826.1| hypothetical protein SELMODRAFT_44533 [Selaginella moellendorffii]
Length = 414
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 257/426 (60%), Gaps = 17/426 (3%)
Query: 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQ 65
KV+H+RN+ +++E+DL++L +PFG ++ +V+LR NQA +QMQD+ A ++ + + Q
Sbjct: 1 KVLHLRNLAQDVAEDDLVELVRPFGRVSGIVLLRTWNQAFVQMQDIAKAFLVIRHFASRQ 60
Query: 66 PTIRGRNVYVQFSSHQELTTME-QNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPH 124
T+RGR+V +QFS+ +EL E AQ + + ILLVT+ + +TV+ LHQ F
Sbjct: 61 ATVRGRDVSIQFSARKELYPAEVCQAQ---ETCSAILLVTMLDSVCHVTVDALHQTFKSF 117
Query: 125 GFVEKIVTFQKSAGF-QALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G +EKI F +S QALIQY A A+ L I +G C ++IQ+S DE++V
Sbjct: 118 GPIEKIAIFPQSTVLAQALIQYASPRDAREAKHRLHKSKILNGSCTMEIQYSRTDEVRVA 177
Query: 184 YNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTND 243
NN+ SRDFTN +LP+ + PS G + P + G LP G T TN
Sbjct: 178 CNNDLSRDFTNSSLPSARF--PSILGAGNVHLMKPGVR--CRYRPGNSGLLPSGPT-TNQ 232
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
RC +L+SNLN+ I+E KL+NLFS+YGN++RIK KP+ ALVQM DGFQA+LA+ LK
Sbjct: 233 RCVLLLSNLNTRMINEHKLYNLFSVYGNVLRIKGSFVKPELALVQMSDGFQADLAMACLK 292
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G LFGK++E+ S H + + TH Y NRF AK CC PTK+IH S L
Sbjct: 293 GVSLFGKKMEITLSDH-SCLRHPHTHFYSWGTGNRFLYAYAKK---CCPPTKVIHASNLV 348
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF---EMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
D+ E ++V H EHG IV ++ E +++ALV F + E ATEA+ CK SSL G+
Sbjct: 349 PDIQEVDVVRHFAEHGVIVKVEVSQAREGRKRREALVEFTSVESATEAIACKQWSSLRGA 408
Query: 421 IIRISF 426
R+ +
Sbjct: 409 RARLVY 414
>gi|427789193|gb|JAA60048.1| Putative hephaestus [Rhipicephalus pulchellus]
Length = 559
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 259/474 (54%), Gaps = 53/474 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+V+H+RN+ ++ ++ D++ L PFG +T ++ L+ KNQA L+M D SA+ + ++T
Sbjct: 88 KPSRVVHIRNIPNDATDTDIVHLGVPFGKVTNVLQLKGKNQAFLEMADEGSAVAMVDYFT 147
Query: 63 NVQPTIRGRNVYVQFSSHQELTTME-----QNAQGRGDEPNRILLVTIHHMLYPITVEVL 117
P++RGR VYVQFS+H+EL T N G G N +L V + + +YP+T+++L
Sbjct: 148 KASPSVRGRVVYVQFSNHRELKTDNVHGALANQGGEGGGANTVLRVVVDNQIYPVTLDLL 207
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
H +FS G V KIVTF KS FQALIQ+ A A+ +L G++IY+ CC L I++S L
Sbjct: 208 HSIFSRAGKVLKIVTFTKSNSFQALIQFSDVMGAQAAKLALDGQSIYNACCTLRIEYSKL 267
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPS------------------------------- 206
L V YNN++SRDFTNP LP G P+
Sbjct: 268 TNLNVKYNNDKSRDFTNPTLPT---GDPTLDIGLAGSLGILASPFAAAGPGLTSPLTAAY 324
Query: 207 ----QSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 262
+G G A A +AA A G PG T+ C +LVSNLN + D L
Sbjct: 325 AASATAGLPLGGFALSPSAPSAATALGMAGIRLPGQATTS--CVLLVSNLNEQMVTPDAL 382
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
F LF +YG++IR+K+L NK D AL+QM + QA+LA+ L ++GK + V SKH +
Sbjct: 383 FTLFGVYGDVIRVKILFNKKDSALIQMAEPQQAQLAMSHLDKIKVYGKPIRVTPSKHHIV 442
Query: 323 TQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
D T +Y+NS L+RF + +KNY+ P+ +HLS +P V+EE+I
Sbjct: 443 QLPKDGQPDAGLTKDYINSPLHRFKKPGSKNYQNIYPPSATLHLSNIPPTVSEEQIREAF 502
Query: 376 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
+ G V F +K AL+ + E++ AL+ H L S +R+SFS+
Sbjct: 503 TQTGGTVVAFKFFPKDRKMALIQMGSVEESVTALIKMHNYQLSDSNHLRVSFSK 556
>gi|427796833|gb|JAA63868.1| Putative hephaestus, partial [Rhipicephalus pulchellus]
Length = 554
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 259/474 (54%), Gaps = 53/474 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+V+H+RN+ ++ ++ D++ L PFG +T ++ L+ KNQA L+M D SA+ + ++T
Sbjct: 83 KPSRVVHIRNIPNDATDTDIVHLGVPFGKVTNVLQLKGKNQAFLEMADEGSAVAMVDYFT 142
Query: 63 NVQPTIRGRNVYVQFSSHQELTTME-----QNAQGRGDEPNRILLVTIHHMLYPITVEVL 117
P++RGR VYVQFS+H+EL T N G G N +L V + + +YP+T+++L
Sbjct: 143 KASPSVRGRVVYVQFSNHRELKTDNVHGALANQGGEGGGANTVLRVVVDNQIYPVTLDLL 202
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
H +FS G V KIVTF KS FQALIQ+ A A+ +L G++IY+ CC L I++S L
Sbjct: 203 HSIFSRAGKVLKIVTFTKSNSFQALIQFSDVMGAQAAKLALDGQSIYNACCTLRIEYSKL 262
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPS------------------------------- 206
L V YNN++SRDFTNP LP G P+
Sbjct: 263 TNLNVKYNNDKSRDFTNPTLPT---GDPTLDIGLAGSLGILASPFAAAGPGLTSPLTAAY 319
Query: 207 ----QSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 262
+G G A A +AA A G PG T+ C +LVSNLN + D L
Sbjct: 320 AASATAGLPLGGFALSPSAPSAATALGMAGIRLPGQATTS--CVLLVSNLNEQMVTPDAL 377
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
F LF +YG++IR+K+L NK D AL+QM + QA+LA+ L ++GK + V SKH +
Sbjct: 378 FTLFGVYGDVIRVKILFNKKDSALIQMAEPQQAQLAMSHLDKIKVYGKPIRVTPSKHHIV 437
Query: 323 TQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
D T +Y+NS L+RF + +KNY+ P+ +HLS +P V+EE+I
Sbjct: 438 QLPKDGQPDAGLTKDYINSPLHRFKKPGSKNYQNIYPPSATLHLSNIPPTVSEEQIREAF 497
Query: 376 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
+ G V F +K AL+ + E++ AL+ H L S +R+SFS+
Sbjct: 498 TQTGGTVVAFKFFPKDRKMALIQMGSVEESVTALIKMHNYQLSDSNHLRVSFSK 551
>gi|440804444|gb|ELR25321.1| hnRNPL/PTB/hephaestus splicing factor subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 575
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 174/443 (39%), Positives = 260/443 (58%), Gaps = 26/443 (5%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ + +E +L+ + PFG + K+++L+ K Q +QMQDV SA +Q Y+
Sbjct: 116 PSSVLHVRNLPMDCTEQELVTIACPFGRVEKVLLLKGKTQGFVQMQDVQSASALVQCYSQ 175
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE-PNRILLVTIHHMLYPITVEVLHQVFS 122
Q IRG+ VY Q+S HQ + T GDE N ILLVT+ +++YP+T+++LHQVFS
Sbjct: 176 AQVNIRGKPVYFQYSQHQAVNT------ATGDEQSNHILLVTVTNLVYPVTIDILHQVFS 229
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
+G + KIV F K GFQALIQ + A A+ +L G+NIY GCC L IQ+SNL L V
Sbjct: 230 KYGAIHKIVIFSKK-GFQALIQMGDKNQAQAAKQALDGQNIYSGCCTLRIQYSNLPSLNV 288
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEA----GVA-FPQMANAA--AIAAAFGGGLP 235
YNN++SRDFTN NLP+ P+ + A G+ FP + AAFG G
Sbjct: 289 KYNNDKSRDFTNNNLPSGDAAGPAVGQFGGALNPLGLGLFPDASYGGYHVSPAAFGYGQK 348
Query: 236 PGITGTN---DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G G ++V+ L ++R+ D LF LF +YG+++R+K+L NK D ALVQ
Sbjct: 349 QGAVGMAMGMGPSVLIVNGLEAERVTPDVLFTLFGVYGDVLRVKILYNKTDTALVQFATP 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI------TQGAD-THEYMNSNLNRFNRNAAK 345
QAE A+ L A LFG+ L +NFSKH I T+GA T +Y S L+RF +K
Sbjct: 409 QQAETALANLNQAPLFGRTLTINFSKHNTIAMPREGTEGAHLTKDYTGSPLHRFKVAGSK 468
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N+++ P ++H+S +P +EE+I + ++G +++ + F + ++ V + +
Sbjct: 469 NFQHIFPPGSVLHVSNIPASASEEDIKNLFAQYGRVLSFRFFAKD-RRMGHVEMASTTEG 527
Query: 406 TEALVCKHASSLGGSIIRISFSQ 428
EAL+ H + L +R++FS+
Sbjct: 528 IEALLYTHNAQLHDHHLRVTFSK 550
>gi|156392443|ref|XP_001636058.1| predicted protein [Nematostella vectensis]
gi|156223157|gb|EDO43995.1| predicted protein [Nematostella vectensis]
Length = 470
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 277/476 (58%), Gaps = 60/476 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKV+H+RNV E ++ +++ L P+G +T ++ML+ KNQA L+M+ +A+ + Y+
Sbjct: 1 PSKVLHLRNVAAEATDAEIIALGIPYGRVTNVLMLKGKNQAFLEMKTKENAMALMNSYSY 60
Query: 64 VQPTIRGRNVYVQFSSHQELTTME-QNAQG----------------------RGDEPNR- 99
+ P+IRGR +Y+Q+S+HQELTT E Q++ G G+ P+
Sbjct: 61 IPPSIRGRQIYIQYSNHQELTTNESQHSPGVRGLSSSHLGAGIGSLTSGLGIAGELPSVN 120
Query: 100 --ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
IL + + +MLYPIT+EVL+Q+F+ +G V KIV F ++ FQAL+Q+ A A+ S
Sbjct: 121 GCILRIIVENMLYPITIEVLNQIFTKYGTVLKIVIFTRNNQFQALVQFSQSTEARAAKCS 180
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-EQKGRPSQSGYSEAGVA 216
L G+NIY+GCC L I +S L L V YNN+++RD+T P+LP+ E PS G+ AG+
Sbjct: 181 LDGQNIYNGCCTLRIDYSKLKTLSVKYNNDKTRDYTRPDLPSGESTPDPSALGF--AGLG 238
Query: 217 FPQMANAAAIAAAFGGG-----------------LPPGITGTNDRCTVLVSNLNSDRIDE 259
+ + AA+ G G +P G VLVSNLN + I
Sbjct: 239 TSVLGSPAALLGFPGLGGLPLANLASLANAAPQRMPMG------SPLVLVSNLNEEMISC 292
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D LF LF YG++ R+K+L NK D ALVQ + QA+ A+ L G +FGK ++V SKH
Sbjct: 293 DALFTLFGCYGDVQRVKILFNKKDTALVQFANVHQAQTAIGHLNGVRVFGKEMKVTNSKH 352
Query: 320 PNIT---QGADTH---EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+++ +G DT+ +YMNS L+RF + +KN++ P++ +HLS +P+ VTEEE+ S
Sbjct: 353 TSVSLPKEGEDTNLTKDYMNSPLHRFKKPGSKNFQNIFPPSRTLHLSNIPESVTEEELTS 412
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
E+ G + + + + +K A + T E+A +AL+ H + + +R+SF++
Sbjct: 413 MFEDCGDVADFRFLPKD-RKMAHLSMATTEEAIDALIKMHNYKISETHHLRVSFAR 467
>gi|443711043|gb|ELU04990.1| hypothetical protein CAPTEDRAFT_200421 [Capitella teleta]
Length = 524
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 264/465 (56%), Gaps = 43/465 (9%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PSKV+H R V + +E +++QL PFG +T LV+ + KNQA L+M DV SA + Y
Sbjct: 30 KPSKVLHFRGVPADATEGEVVQLGLPFGHMTNLVLAKKKNQAWLEMVDVQSAQAVVSCYH 89
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG------------DEPNRILLVTIHHMLY 110
+ P IRGR VYVQFS++ L T + D+P +L V + +MLY
Sbjct: 90 DRPPQIRGRTVYVQFSNYDILKTEASQQGAQAALQAAQQLMTNVDDPKTVLRVIVENMLY 149
Query: 111 PITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQL 170
P+T++VL +FS +G V KIVTF K+ FQALIQ+ + +A A+ SL G+NIY+GCC L
Sbjct: 150 PVTIDVLKSIFSRYGQVLKIVTFSKNNTFQALIQFSDQIAAQTAKVSLHGQNIYNGCCTL 209
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS---------GYSEAGVAFPQMA 221
I FS L L V YNN++SRD+TNPNLP+ G+P+ G S AG+ Q A
Sbjct: 210 RIDFSKLQALNVKYNNDKSRDYTNPNLPSGD-GQPAMPVDAQGAGSMGLSAAGLGAFQAA 268
Query: 222 --------NAAA-IAAAFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
NAAA + A GL PG T +LVSNLN ++ D LF LF +YG+
Sbjct: 269 VPFSLAGLNAAAGLNAMNAAGLRLPGQPQTG--AVLLVSNLNEQKVTPDALFTLFGVYGD 326
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD---- 327
+IR+K++ NK D+AL+Q D QA + + ++GK ++V SKH + +
Sbjct: 327 VIRVKIMFNKKDNALIQFADAAQASCCLTHMDKLKVWGKNIKVAPSKHSVVQMPKEGQPD 386
Query: 328 ---THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
T +Y NS L+RF + +KN+ P+ +HLS +P TEE++ ++HG++V
Sbjct: 387 AGLTKDYTNSPLHRFKKPNSKNHHNIFPPSATLHLSNIPPTTTEEQLQDLFQQHGAVVAF 446
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
K F+ + +K AL+ + E A AL+ H L S +R+S+S+
Sbjct: 447 KFFQKD-RKMALIQMGSVEDAVHALMALHNHQLAETSHLRVSYSK 490
>gi|348522752|ref|XP_003448888.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oreochromis
niloticus]
Length = 654
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 260/482 (53%), Gaps = 61/482 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +I+E +++ L PFG +T L+ML+AKNQA L+M +A N + +Y+
Sbjct: 174 PSRVIHIRKLPSDITEAEVISLGVPFGDVTNLLMLKAKNQAFLEMNSEEAAQNLVGYYST 233
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE----------------PNRILLVTIHH 107
+ P IR VYVQFS+H+EL T Q R P+ +L V + +
Sbjct: 234 MVPIIRHHPVYVQFSNHKELKTDNSPNQERAQAALRALSSSHVDTAAVAPSTVLRVVVEN 293
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
++YP+T++ L Q+FS G V +I+ F K+ FQAL+QY SA A+ SL G+NIY+GC
Sbjct: 294 LIYPVTLDALCQIFSKFGTVLRIIIFTKNNQFQALLQYSDGASAQAAKLSLDGQNIYNGC 353
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP-----------------SQSGY 210
C L I FS L L V YNNE+SRDFT P+LP G+P S + Y
Sbjct: 354 CTLRISFSKLTSLNVKYNNEKSRDFTRPDLPTGD-GQPTMEHTAMATAFAAPGIISAAPY 412
Query: 211 S-------------EAGVAFPQMANAAAIAAAFGG---GLPPGITGTNDRCTVLVSNLNS 254
+ AG+A P + A A + G G PP G +LVSNLN
Sbjct: 413 AGATHAFPPAFTLQPAGLAVPALPGALASLSLPGATRLGFPPIPAG---HSVLLVSNLNP 469
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
+R+ LF LF +YG+++R+K+L NK ++ALVQM D QA+LA+ L G L GK + +
Sbjct: 470 ERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQLAMSHLNGQRLHGKPVRI 529
Query: 315 NFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SKH ++ + HE Y NS L+RF + +KNY P+ +HLS +P V
Sbjct: 530 TLSKHTSVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVV 589
Query: 368 EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISF 426
E+++ G++V F K AL+ + E+A E+L+ H LG +R+SF
Sbjct: 590 EDDLKMLFASSGAVVKAFKFFQKDHKMALIQVGSVEEAIESLIEFHNHDLGENHHLRVSF 649
Query: 427 SQ 428
S+
Sbjct: 650 SK 651
>gi|348550212|ref|XP_003460926.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Cavia porcellus]
Length = 531
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VPPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGLA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K++ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANAAAIAA---------AFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A A A A G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIGIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPIRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P ++EE++
Sbjct: 413 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
S +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSTGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVPPVLRGQPIYIQFSNHKELKTDS 140
>gi|241997960|ref|XP_002433623.1| polypyrimidine tract binding protein, putative [Ixodes scapularis]
gi|215495382|gb|EEC05023.1| polypyrimidine tract binding protein, putative [Ixodes scapularis]
Length = 512
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/470 (38%), Positives = 263/470 (55%), Gaps = 47/470 (10%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ +PS+V+H+RN+ ++ ++ D++ L PFG +T ++ L+ KNQA L+M D SA++ + +
Sbjct: 45 LGKPSRVVHIRNIPNDATDTDIVHLGIPFGKVTNVLQLKGKNQAFLEMSDEASAVSMVDY 104
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT--MEQN-----------AQGR-------------G 94
+T PT+RGR VYVQFS+H+EL T M N GR G
Sbjct: 105 FTKASPTVRGRVVYVQFSNHRELKTEGMHGNLVSGSVVFAPAVMGRVFRGGRQVAQANQG 164
Query: 95 DEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
+ P N +L V + + +YP+++++LH +FS G V KIVTF KS FQALIQ+ A
Sbjct: 165 ESPGGSNTVLRVVVDNQIYPVSLDLLHGIFSRAGKVLKIVTFTKSNTFQALIQFSDVMGA 224
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ +L G++IY+ CC L I++S L L V YNN++SRDFTNP LP G P+
Sbjct: 225 QAAKLALDGQSIYNACCTLRIEYSKLTNLNVKYNNDKSRDFTNPTLPT---GDPTLDNLG 281
Query: 212 EAGVAFPQMA-----NAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLF 266
AG+ A +AA A G PG GT C +LVSNLN + D LF LF
Sbjct: 282 LAGLPLGGFALSPSNPSAATALGMAGIRLPG-QGTAS-CVLLVSNLNEQMVTPDALFTLF 339
Query: 267 SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGA 326
+YG++IR+K+L NK D AL+QM + QA+LA+ L + GK + V SKH +
Sbjct: 340 GVYGDVIRVKILFNKKDSALIQMAEPQQAQLAMSHLDKIKVHGKPVRVTPSKHHIVQLPK 399
Query: 327 D-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 379
D T +Y++S L+RF + +KNY+ P+ +HLS +P V+EE+I + G
Sbjct: 400 DGQPDAGLTKDYISSPLHRFKKPGSKNYQNIYPPSGTLHLSNIPPTVSEEQIREAFTQTG 459
Query: 380 SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 460 GTVVAFKFFPKDRKMALIQMSSIEEAVTALIKMHNYQLSDSNHLRVSFSK 509
>gi|348550210|ref|XP_003460925.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Cavia porcellus]
Length = 557
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 269/503 (53%), Gaps = 83/503 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VPPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGLA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K++ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------A 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP A
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 294
Query: 200 EQKGRP---SQSGYSEAG----VAFPQMANAAAIAAAFGGGLP----------------- 235
G P S S Y+ AG A PQ A ++ G P
Sbjct: 295 AAFGAPGIISASPYAGAGFPPTFAIPQAA-GLSVPNVHGALAPLAIPSAAAAAAAAGRIG 353
Query: 236 -PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG Q
Sbjct: 354 IPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQ 412
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKN 346
A+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +KN
Sbjct: 413 AQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKN 471
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
++ P+ +HLS +P ++EE++ S +G +V F +K AL+ + E+A
Sbjct: 472 FQNIFPPSATLHLSNIPPSISEEDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 531
Query: 407 EALVCKHASSLG-GSIIRISFSQ 428
+AL+ H LG +R+SFS+
Sbjct: 532 QALIDLHNHDLGENHHLRVSFSK 554
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSTGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVPPVLRGQPIYIQFSNHKELKTDS 140
>gi|327263703|ref|XP_003216657.1| PREDICTED: regulator of differentiation 1-like [Anolis
carolinensis]
Length = 558
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 267/495 (53%), Gaps = 72/495 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + ++++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 63 PSRVLHLRKIPNDVTEAEVISLGLPFGRVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 122
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------GDEP 97
+ P +R + VY+Q+S+H+EL T Q R G P
Sbjct: 123 ITPHLRSQPVYIQYSNHRELKTDNLPNQARTQAALQAVSAVQSGGLALTGAPATEGGLPP 182
Query: 98 NR--ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +L + + ++ YP+T+EVL+Q+FS G V KI+TF K+ FQAL+QY +A AR
Sbjct: 183 GQSSVLRIIVENLFYPVTLEVLYQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAR 242
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGY 210
+L G+NIY+ CC L I FS L L V YNN++SRDFT +LP+ G+PS + +
Sbjct: 243 MALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPSLEPTMAAAF 301
Query: 211 SEAGVAFPQMANAAAIAAAFG---------GGLP-------------------PGITGTN 242
G+ A AA A A G G+P PG+ G
Sbjct: 302 GTPGIISSPYAGAAGFAPAIGFPQAAGLSVQGVPSALGPLAITTSTMTGRMAIPGVHGMP 361
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
+LVSNLN D I D LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L
Sbjct: 362 GNSVLLVSNLNPDAITPDGLFILFGVYGDVHRVKIMFNKKENALVQMADATQAQLAMNHL 421
Query: 303 KGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
G L+GK L V SKH + QG T +Y NS L+RF + +KN++ P+
Sbjct: 422 NGQKLYGKMLRVTLSKHQTVQLPREGQEDQGL-TKDYSNSPLHRFKKPGSKNFQNIFPPS 480
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P VT +++ + + G IV F +K AL+ + E+A +AL+ H
Sbjct: 481 ATLHLSNIPPSVTVDDLKNLFADTGCIVKAFKFFPKDRKMALIQLGSVEEAIQALIELHN 540
Query: 415 SSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 541 HDLGENHHLRVSFSK 555
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 55 KGDRSPCSPSRVLHLRKIPNDVTEAEVISLGLPFGRVTN--LLMLKGKSQAFLEMASEEA 112
Query: 405 A 405
A
Sbjct: 113 A 113
>gi|169790993|ref|NP_001116126.1| polypyrimidine tract binding protein-like [Danio rerio]
Length = 564
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 261/495 (52%), Gaps = 72/495 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + ++I+E +++ L PFG +T L+ML+ KNQA L+M +A + +Y++
Sbjct: 69 PSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKGKNQAFLEMNSEEAAQTMVTYYSS 128
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE-------------------------PN 98
V P IR +++Q+S+H+EL T Q R P+
Sbjct: 129 VTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSLTLGGVDPSGMTGPS 188
Query: 99 RILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158
+L V + ++ YP+T++VLHQ+FS G V K++TF K+ FQAL+Q+ +A A+ +L
Sbjct: 189 PVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLAL 248
Query: 159 QGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP-------------------- 198
G+NIY+GCC L I FS L L V YNN++SRD+T P+LP
Sbjct: 249 DGQNIYNGCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPALEHHAVAAAFAAP 308
Query: 199 --------AEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP---------PGITGT 241
A P +AG+ P + A A G P +TGT
Sbjct: 309 GIISAAPYASAHAFPPAFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGT 368
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+ C +LVSNLN +R+ LF LF +YG+++R+K++ NK ++AL+QM DG QA+LA+
Sbjct: 369 H--CVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSH 426
Query: 302 LKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPT 354
L G L+G+ L + SKH + + HE Y NS L+RF + +KNY P+
Sbjct: 427 LNGQKLYGRPLRITLSKHTTVQMPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPS 486
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P V E+++ G++V F +K AL+ + E+A E+L+ H
Sbjct: 487 STLHLSNIPPSVVEDDLKLLFGSSGALVKNFKFFQKDRKMALIQMSSVEEAIESLIQFHN 546
Query: 415 SSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 547 HDLGENHHLRVSFSK 561
>gi|350418407|ref|XP_003491847.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus
impatiens]
Length = 578
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 263/503 (52%), Gaps = 80/503 (15%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIH+RN+ +E+SE +++ L PFG +T +++L+ KNQA L+M D +A + +Y +
Sbjct: 74 SRVIHIRNIPNEVSEGEIIHLGVPFGRVTNVLVLKGKNQAFLEMADENAAATMVNYYASC 133
Query: 65 QPTIRGRNVYVQFSSHQELTTME------------------QNAQGRGDE---PNRILLV 103
+RGR VYVQFS+H+EL T + Q AQ + + PN +L V
Sbjct: 134 MAQLRGRAVYVQFSNHRELKTDQTHTNNANSNNQVALPGQNQVAQTQAETQGGPNTVLRV 193
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
+ M+YPI+++VL+Q+F+ G V KIVTF K+ FQALIQY SA A+ SL+G+NI
Sbjct: 194 IVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLEGQNI 253
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANA 223
Y+ CC L I +S + L V YNN++SRD+TNP+LP + S + G PQ+
Sbjct: 254 YNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAAS-LALGGELLPQLLMG 312
Query: 224 A----------AIAAAFG--------------------------------GGLPPGITGT 241
A +IA A G GG P G G
Sbjct: 313 AGSQPRARIPESIAGAPGVLPTPFAAMHGLPSPLAGPYNGVPPTGGLAGLGGFPLGAAGL 372
Query: 242 NDR--------CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
R +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 373 GVRVPTNAQTSAVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPH 432
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKN 346
QA LA+ + +FGK+++V SKH + T +Y NS L+RF + +KN
Sbjct: 433 QAHLALTHMDKLRVFGKQIKVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLHRFKKPGSKN 492
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y+ P+ +HLS +P VTE+EI ++G V F +K AL+ + + A
Sbjct: 493 YQNIYPPSSTLHLSNIPTTVTEDEIRDAFTKNGFTVKAFKFFPKDRKMALIQMPSMDDAV 552
Query: 407 EALVCKHASSLGGSI-IRISFSQ 428
AL+ H L S +R+SFS+
Sbjct: 553 AALIKMHNYQLSESNHLRVSFSK 575
>gi|61403202|gb|AAH91854.1| Ptbp1b protein [Danio rerio]
Length = 586
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 261/495 (52%), Gaps = 72/495 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + ++I+E +++ L PFG +T L+ML+ KNQA L+M +A + +Y++
Sbjct: 91 PSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKGKNQAFLEMNSEEAAQTMVTYYSS 150
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE-------------------------PN 98
V P IR +++Q+S+H+EL T Q R P+
Sbjct: 151 VTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSLTLGGVDPSGMTGPS 210
Query: 99 RILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158
+L V + ++ YP+T++VLHQ+FS G V K++TF K+ FQAL+Q+ +A A+ +L
Sbjct: 211 PVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLAL 270
Query: 159 QGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP-------------------- 198
G+NIY+GCC L I FS L L V YNN++SRD+T P+LP
Sbjct: 271 DGQNIYNGCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPALEHHAVAAAFAAP 330
Query: 199 --------AEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP---------PGITGT 241
A P +AG+ P + A A G P +TGT
Sbjct: 331 GIISAAPYASAHAFPPAFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGT 390
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+ C +LVSNLN +R+ LF LF +YG+++R+K++ NK ++AL+QM DG QA+LA+
Sbjct: 391 H--CVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSH 448
Query: 302 LKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPT 354
L G L+G+ L + SKH + + HE Y NS L+RF + +KNY P+
Sbjct: 449 LNGQKLYGRPLRITLSKHTTVQMPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPS 508
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P V E+++ G++V F +K AL+ + E+A E+L+ H
Sbjct: 509 STLHLSNIPPSVVEDDLKLLFGSSGALVKNFKFFQKDRKMALIQMSSVEEAIESLIQFHN 568
Query: 415 SSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 569 HDLGENHHLRVSFSK 583
>gi|340726548|ref|XP_003401618.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus
terrestris]
Length = 578
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 263/503 (52%), Gaps = 80/503 (15%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIH+RN+ +E+SE +++ L PFG +T +++L+ KNQA L+M D +A + +Y +
Sbjct: 74 SRVIHIRNIPNEVSEGEIIHLGVPFGRVTNVLVLKGKNQAFLEMADENAAATMVNYYASC 133
Query: 65 QPTIRGRNVYVQFSSHQELTTME------------------QNAQGRGDE---PNRILLV 103
+RGR VYVQFS+H+EL T + Q AQ + + PN +L V
Sbjct: 134 MAQLRGRAVYVQFSNHRELKTDQTHTNNANSNSQVTLPGQNQVAQTQAETQGGPNTVLRV 193
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
+ M+YPI+++VL+Q+F+ G V KIVTF K+ FQALIQY SA A+ SL+G+NI
Sbjct: 194 IVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLEGQNI 253
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANA 223
Y+ CC L I +S + L V YNN++SRD+TNP+LP + S + G PQ+
Sbjct: 254 YNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAAS-LALGGELLPQLLMG 312
Query: 224 A----------AIAAAFG--------------------------------GGLPPGITGT 241
A +IA A G GG P G G
Sbjct: 313 AGSQPRARIPESIAGAPGVLPTPFAAMHGLPSPLAGPYNGVPPTGGLAGLGGFPLGAAGL 372
Query: 242 NDR--------CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
R +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 373 GVRVPTNAQTSAVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPH 432
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKN 346
QA LA+ + +FGK+++V SKH + T +Y NS L+RF + +KN
Sbjct: 433 QAHLALTHMDKLRVFGKQIKVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLHRFKKPGSKN 492
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y+ P+ +HLS +P VTE+EI ++G V F +K AL+ + + A
Sbjct: 493 YQNIYPPSSTLHLSNIPTTVTEDEIRDAFTKNGFTVKAFKFFPKDRKMALIQMPSMDDAV 552
Query: 407 EALVCKHASSLGGS-IIRISFSQ 428
AL+ H L S +R+SFS+
Sbjct: 553 AALIKMHNYQLSESNHLRVSFSK 575
>gi|417402720|gb|JAA48196.1| Putative polypyrimidine tract-binding protein [Desmodus rotundus]
Length = 557
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 175/506 (34%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALHAVNSVQSGNLALAASAAAVDAGMA 176
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 409
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 410 GSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 468
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+E+++ +G +V F +K AL+ + E
Sbjct: 469 SKNFQNIFPPSATLHLSNIPPSVSEDDLKILFSSNGGVVKGFKFFQKDRKMALIQMGSVE 528
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 529 EAIQALIDLHNHDLGENHHLRVSFSK 554
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|348540154|ref|XP_003457553.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oreochromis
niloticus]
Length = 511
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/469 (37%), Positives = 261/469 (55%), Gaps = 55/469 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +E SE +++ L PFG +T ++ L+ KNQA L+M +A+ + +Y+
Sbjct: 51 PSRVIHIRKLPNEASEAEVIALGLPFGKVTNILTLKGKNQAFLEMGTEEAAVTMVNYYSK 110
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQN------------AQGRGDEPNRILL--------V 103
V P IR V++Q+S+H+EL T N AQ G E +L +
Sbjct: 111 VTPLIRNIQVFIQYSNHKELKTDAANQRTQAVLQAVSAAQSPGSEVQEVLAAVSSPVLRI 170
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ SA A+ +L G+NI
Sbjct: 171 IIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVSAQQAKLALDGQNI 230
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANA 223
Y+ CC L I FS L L V YNN++SRD+T P LPA G+PS VAF
Sbjct: 231 YNSCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGD-GQPSFD--PTVAVAF------ 281
Query: 224 AAIAAAFGGGLPP--------------GITG-TNDRCTVLVSNLNSDRIDEDKLFNLFSL 268
+ +++ G L P +TG T +LVSNLN + + LF LF +
Sbjct: 282 SKDSSSLLGALNPLSAAAAAAAAAGRVALTGQTGSSGVLLVSNLNEEMVTPQSLFTLFGV 341
Query: 269 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD- 327
YG++ R+K+L NK D AL+QM + QA+LA+ L G ++GK + V SKH + D
Sbjct: 342 YGDVQRVKILYNKKDSALIQMSESNQAQLAMSHLNGQKMYGKIIRVTLSKHQTVALPRDG 401
Query: 328 ------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI 381
T ++ NS L+RF + +KN++ P+ +HLS +PQDVTE+++ G
Sbjct: 402 LDDQGLTKDFANSPLHRFKKPGSKNFQNIFPPSATLHLSNIPQDVTEDDLRLLFSNTGGT 461
Query: 382 VNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
V K F+ +K AL+ T E+A +AL+ H ++GG+ +R+SFS+
Sbjct: 462 VKAFKFFQ--DRKMALIQMSTVEEAIQALIDLHNYNMGGNQHLRVSFSK 508
>gi|291227384|ref|XP_002733659.1| PREDICTED: polypyrimidine tract-binding protein 1-like
[Saccoglossus kowalevskii]
Length = 558
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 178/490 (36%), Positives = 266/490 (54%), Gaps = 68/490 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+RNV + +E++++ L PFG +T +++L+ K+QA L+M++ +A + +Y++V
Sbjct: 68 SRVVHIRNVVADATESEIIALGVPFGRVTNILLLKGKSQAFLEMENETAATTMVNYYSHV 127
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNA------------------QGRGDEP-------NR 99
IRGR VYVQFS+H+EL T A Q G P N
Sbjct: 128 TANIRGRPVYVQFSNHKELKTENAPAQQTAAAQAALAAAQSLMPQTLGVHPGDTLGGQNT 187
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L V + +MLYP+TV++LHQ+FS G V KI+TF K+ FQALIQ+ SA ++ SL
Sbjct: 188 VLRVIVENMLYPVTVDILHQIFSKFGAVLKIITFNKNNTFQALIQFADAVSAQASKLSLD 247
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ 219
G+NIY+ CC L I +S L L V YNN++SRD+T P+LP+ G+P G A P
Sbjct: 248 GQNIYNACCTLRIDYSKLTTLNVKYNNDKSRDYTRPDLPSGD-GQPPLDPAMAFGNAAPG 306
Query: 220 M----------ANAAAIAAAFGGGLPPGITGT-----------------------NDRCT 246
M A A A A G PG+ G C
Sbjct: 307 MLPTPNAAAMGAAFANPALAGYGATVPGLPGMYSMPTHVSAAAAAAGLRYAGQMQQQGCV 366
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNLN++ + + LF LF +YG++ R+K++ K D ALVQ+ + QA+ A+ L G
Sbjct: 367 LLVSNLNAELVTPEVLFTLFGVYGDVHRVKIIFAKKDTALVQLAEPHQAQTAMTHLNGIK 426
Query: 307 LFGKRLEVNFSKH-----PNITQ--GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+FGK L + SKH P Q T ++ +S L+RF + +KN+ P+ +HL
Sbjct: 427 MFGKPLRITLSKHQLVQLPKEGQPDAGLTKDFQSSPLHRFKKPGSKNFMNIYPPSATLHL 486
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
S +P +VTE++I S HGS+ K F+ + +K AL+ ++ E+A ALV H L
Sbjct: 487 SNIPPNVTEQDITSAFTRHGSVSAFKFFQKD-RKMALIQMDSIEEAVTALVAMHNYQLSN 545
Query: 420 SI-IRISFSQ 428
S +R+SFS+
Sbjct: 546 SSHLRVSFSK 555
>gi|417402381|gb|JAA48040.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 531
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALHAVNSVQSGNLALAASAAAVDAGMA 176
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 413 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 ILFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|345496639|ref|XP_001603240.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Nasonia
vitripennis]
Length = 587
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 177/514 (34%), Positives = 265/514 (51%), Gaps = 89/514 (17%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +E+SE +++ L PFG +T +++L+ KNQA L+M D SA + +
Sbjct: 72 KPSRVIHIRNIPNEVSEGEIIHLGMPFGRVTNVLVLKGKNQAFLEMADEGSAATMVTYCA 131
Query: 63 NVQPTIRGRNVYVQFSSHQEL-----------------------TTMEQNAQGR--GDE- 96
+ +RGR VYVQFS+H+EL T+++ QG+ G E
Sbjct: 132 SCPAQLRGRAVYVQFSNHRELKTDQGHNNAVGSPTNAIANTSNNTSVQAAGQGQVQGSET 191
Query: 97 ---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
PN +L V + H +YPI+++VL+Q+F+ +G V KIVTF K+ FQALIQY SA
Sbjct: 192 QGGPNTVLRVIVEHQIYPISLDVLYQIFTRYGKVLKIVTFTKNGTFQALIQYADMLSAQT 251
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ +L G+NIY+ CC L I +S + L V YNN++SRD+TNP LP + S +
Sbjct: 252 AKFNLDGQNIYNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPTLPTGDANLDAAS-LALG 310
Query: 214 GVAFPQMANAAA------------------IAAAFGG--GLPPGITGTND---------- 243
G PQ+ AA +A+ F GLP +TG +
Sbjct: 311 GELLPQLLLGAAGSQPRARLPESIAGAPSVLASPFAAMHGLPSPLTGPYNGVPPAGGLAG 370
Query: 244 ---------------------RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
C +L+SNLN + + D LF LF +YG++ R+K+L NK
Sbjct: 371 LGGFNLGAGALGVRVPGSPQPSCVLLISNLNEEMVTPDALFTLFGVYGDVQRVKILYNKK 430
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSN 335
D AL+Q+ + QA LA+ + +FGK + V SKH + T +Y NS
Sbjct: 431 DSALIQLAEPHQAHLAMTHMDKLKVFGKPIRVMLSKHQTVQLPREGQPDAGLTKDYTNSP 490
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
L+RF + +KNY+ P+ +HLS +P V+EEEI ++G V F +K A
Sbjct: 491 LHRFKKPGSKNYQNIYPPSATLHLSNIPATVSEEEIKEAFTKNGFTVKAFKFFPKDRKMA 550
Query: 396 LVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
L+ + + A AL+ H L S +R+SFS+
Sbjct: 551 LIQMPSMDDAVSALIKMHNYQLSESNHLRVSFSK 584
>gi|223647466|gb|ACN10491.1| Polypyrimidine tract-binding protein 2 [Salmo salar]
Length = 540
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 185/494 (37%), Positives = 271/494 (54%), Gaps = 71/494 (14%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+R + E+SE +++ L PFG +T ++ML+ KNQA L++ +A+ + +Y
Sbjct: 48 SPPSRVLHIRKLPSEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYY 107
Query: 62 TNVQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEPNR---------- 99
T V P +R V++QFS+H+EL +T+ Q AQ G PN
Sbjct: 108 TAVMPQVRNVPVFIQFSNHKELKTDSTLNQRAQAVLQAVSAVQDGGSPNSDNSTLDSVLA 167
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ +A A
Sbjct: 168 HAPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSEPVNAQQA 227
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK------------ 202
R SL G+NIY+ CC L I FS L L V YNN++SRD+T P LPA
Sbjct: 228 RLSLDGQNIYNSCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAVDPAMAAAY 287
Query: 203 -------GRPS------------QSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTND 243
G PS QS S+ G A M+ AAA AAA G G +G +
Sbjct: 288 NKDSSLLGTPSGMGAPYSNGGGFQSSLSQGGGAINPMSAAAAAAAAAGRMALSGHSGCS- 346
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
+LVSNLN + + LF LF +YG+ R+K+L NK D AL+QM DG QA+LA+ L
Sbjct: 347 -GVLLVSNLNEEMVTPQSLFTLFGVYGDAQRVKILYNKKDSALIQMSDGNQAQLAMSHLN 405
Query: 304 GALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
G ++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+
Sbjct: 406 GQKMYGKIIRVTLSKHQAVQLPREGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPSAT 465
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHAS 415
+HLS +P+DVTEE++ G IV K F+ G K AL+ T E+A +AL+ H
Sbjct: 466 LHLSNVPEDVTEEDLRLLFSNAGGIVKAFKFFQ--GHKMALLQMSTVEEAIQALMDLHNY 523
Query: 416 SLGGS-IIRISFSQ 428
+G + +++SFS+
Sbjct: 524 DMGSNHHLKVSFSK 537
>gi|380018871|ref|XP_003693343.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Apis
florea]
Length = 578
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/503 (35%), Positives = 266/503 (52%), Gaps = 80/503 (15%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIH+RN+ +E+SE +++ L PFG +T +++L+ KNQA L+M D +A + +Y +
Sbjct: 74 SRVIHIRNIPNEVSEGEIIHLGIPFGRVTNVLVLKGKNQAFLEMADENAAATMVNYYASC 133
Query: 65 QPTIRGRNVYVQFSSHQELTTME------------------QNAQGRGDE---PNRILLV 103
+RGR VYVQFS+H+EL T + Q AQ + + PN +L V
Sbjct: 134 MAQLRGRAVYVQFSNHRELKTDQTHTNNANSNNQVAIPGQNQVAQTQAETQGGPNTVLRV 193
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
+ M+YPI+++VL+Q+F+ G V KIVTF K+ FQALIQY SA A+ SL+G+NI
Sbjct: 194 IVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLEGQNI 253
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANA 223
Y+ CC L I +S + L V YNN++SRD+TNP+LP + S + G PQ+
Sbjct: 254 YNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAAS-LALGGELLPQLLMG 312
Query: 224 A----------AIAAAFG---------GGLPPGITG------------------------ 240
A +IA A G GLP + G
Sbjct: 313 AGSQPRARIPESIAGAPGVLPTPFAAMHGLPSPLAGPYNGVPPAGGLAGLGGFPLGAAGL 372
Query: 241 -----TNDRCT--VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
TN + + +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 373 GVRVPTNAQTSAVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPH 432
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKN 346
QA LA+ + +FGK+++V SKH + T +Y NS L+RF + +KN
Sbjct: 433 QAHLALTHMDKLRVFGKQIKVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLHRFKKPGSKN 492
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y+ P+ +HLS +P VTEEEI ++G V F +K AL+ + + A
Sbjct: 493 YQNIYPPSSTLHLSNIPTTVTEEEIRDAFTKNGFTVKAFKFFPKDRKMALIQMPSMDDAV 552
Query: 407 EALVCKHASSLGGS-IIRISFSQ 428
AL+ H L S +R+SFS+
Sbjct: 553 AALIKMHNYQLSESNHLRVSFSK 575
>gi|28849152|dbj|BAC65159.1| polypirimidine tract binding protein [Mus musculus]
Length = 554
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 264/504 (52%), Gaps = 87/504 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 467
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ S +G + F +K AL+ + E+
Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVAKGFKFFQKDRKMALIQMGSVEE 527
Query: 405 ATEALVCKHASSLGGSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 528 AVQALIELHNHDLGEHHLRVSFSK 551
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|351714013|gb|EHB16932.1| Polypyrimidine tract-binding protein 1, partial [Heterocephalus
glaber]
Length = 548
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 179/506 (35%), Positives = 268/506 (52%), Gaps = 86/506 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 45 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 104
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQG------------------------------- 92
V P +RG+ +Y+QFS+H+EL T Q
Sbjct: 105 VTPVLRGQPIYIQFSNHKELKTDSSPNQAVRAHAALQAVNSVQSGNLALAASAAAVDAGM 164
Query: 93 --RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K++ FQAL+QY S
Sbjct: 165 AMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVS 222
Query: 151 AVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------ 198
A A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP
Sbjct: 223 AQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTM 282
Query: 199 AEQKGRP---SQSGYSEAG----VAFPQMANAAAIAAAFGGGLP---------------- 235
A G P S S Y+ AG A PQ A ++ G P
Sbjct: 283 AAAFGAPGIISASPYAGAGFPPTFAIPQAA-GLSVPNVHGALAPLAIPSAAAAAAAAGRI 341
Query: 236 --PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 342 GIPGLGGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 400
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAK 345
+A+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +K
Sbjct: 401 RAQLAMSHLDGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSK 459
Query: 346 NYRYCCSPTKMIHLSTLPQ--DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
N++ P+ +HLS +P ++EE++ S +G +V F +K AL+ + E
Sbjct: 460 NFQNIFPPSATLHLSNIPPSISISEEDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 519
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 520 EAVQALIDLHNHDLGENHHLRVSFSK 545
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 28 NGNDSKKFKGDSRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 85
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 86 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 128
>gi|332255809|ref|XP_003277021.1| PREDICTED: polypyrimidine tract-binding protein 1 [Nomascus
leucogenys]
Length = 505
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 268/481 (55%), Gaps = 61/481 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT---MEQNAQGR--------------------------- 93
V P +RG+ +Y+QFS+H+EL T Q AQ
Sbjct: 87 VTPVLRGQPIYIQFSNHKELKTDSSPNQRAQAALQAVNSVQSGNLALAASAAAVDAGMAM 146
Query: 94 -GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 AGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQ 204
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS---- 208
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 205 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMA 263
Query: 209 ---GYSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR 256
G A ++ P + A AA AAA G PG+ G + +LVSNLN +R
Sbjct: 264 AAFGKRTASLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPER 322
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + +
Sbjct: 323 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 382
Query: 317 SKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
SKH N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+E
Sbjct: 383 SKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 441
Query: 369 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFS 427
E++ +G +V F +K AL+ + E+A +AL+ H LG +R+SFS
Sbjct: 442 EDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 501
Query: 428 Q 428
+
Sbjct: 502 K 502
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 67
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 68 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 110
>gi|119581557|gb|EAW61153.1| polypyrimidine tract binding protein 1, isoform CRA_b [Homo
sapiens]
Length = 527
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 87 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 146
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 204
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 205 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 263
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 264 AAAFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 320
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 321 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 379
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 380 GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 438
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E
Sbjct: 439 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 498
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 499 EAVQALIDLHNHDLGENHHLRVSFSK 524
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 67
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 68 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 110
>gi|66472746|ref|NP_001018313.1| polypyrimidine tract binding protein 1a [Danio rerio]
gi|63100731|gb|AAH95372.1| Polypyrimidine tract binding protein 1a [Danio rerio]
Length = 574
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/502 (34%), Positives = 261/502 (51%), Gaps = 79/502 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + ++I+E +++ L PFG +T L+ML+ KNQA L+M SA + +Y++
Sbjct: 72 PSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEESAQTMVSYYSS 131
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQ--------------------------NAQGRGDEP 97
V P IR +++Q+S+H+EL T + G G +
Sbjct: 132 VTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGGMSLAAIDGAGMGSQ- 190
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
+ +L V + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+ S
Sbjct: 191 SPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHAKLS 250
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAF 217
L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP +PS + A A
Sbjct: 251 LDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS-QPSFDAQTMAAAAL 309
Query: 218 --PQMANAAAIAAAFG---------------GGLPPGITGT------------------- 241
P + +A+ A A G G+P G +
Sbjct: 310 TAPGIISASPYAGAHGFPQAFAIQQAAGLSLQGMPAGALASLSVPGAAAAAAAAAAAGRL 369
Query: 242 -------NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
+LVSNLN + + LF LF +YG+++R+K+L NK ++ALVQM DG Q
Sbjct: 370 GLSGLTAAGNSVLLVSNLNPESVTPQCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQ 429
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKNY 347
A+LA+ L G L+GK L SKH + + HE Y NS L+RF + +KNY
Sbjct: 430 AQLAMSHLNGQKLYGKALRATLSKHTTVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKNY 489
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
P+ +HLS +P VTE+++ G++V F +K AL+ + E+A E
Sbjct: 490 SNIFPPSSTLHLSNIPPSVTEDDLRGLFLSSGAVVKAFKFFQKDRKMALIQLASVEEAIE 549
Query: 408 ALVCKHASSLG-GSIIRISFSQ 428
+L+ H LG +R+SFS+
Sbjct: 550 SLIKFHNHDLGENHHLRVSFSK 571
>gi|30583817|gb|AAP36157.1| Homo sapiens polypyrimidine tract binding protein 1 [synthetic
construct]
gi|61369451|gb|AAX43339.1| polypyrimidine tract binding protein 1 [synthetic construct]
Length = 558
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 409
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 410 GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 468
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E
Sbjct: 469 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 528
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 529 EAVQALIDLHNHDLGENHHLRVSFSK 554
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|355702910|gb|EHH29401.1| hypothetical protein EGK_09820, partial [Macaca mulatta]
Length = 555
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 266/503 (52%), Gaps = 83/503 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 55 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 114
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+ L T ++
Sbjct: 115 VTPVLRGQPIYIQFSNHKGLKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 174
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 175 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 232
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------A 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP A
Sbjct: 233 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 292
Query: 200 EQKGRP---SQSGYSEAG----VAFPQMANAAAIAAAFGGGLP----------------- 235
G P S S Y+ AG A PQ A I G +P
Sbjct: 293 AAFGAPGIISASPYAGAGFPPTFAIPQAA-GIQIPNIHGALVPLAIPSAAAAAAAAGRIA 351
Query: 236 -PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG Q
Sbjct: 352 IPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQ 410
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKN 346
A+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +KN
Sbjct: 411 AQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKN 469
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A
Sbjct: 470 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 529
Query: 407 EALVCKHASSLG-GSIIRISFSQ 428
+AL+ H LG +R+SFS+
Sbjct: 530 QALIDLHNHDLGENHHLRVSFSK 552
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 333 NSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
+SN N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 SSNSAAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLM 88
Query: 389 MNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 LKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKGLKTDS 138
>gi|402903486|ref|XP_003914596.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Papio
anubis]
gi|380814964|gb|AFE79356.1| polypyrimidine tract-binding protein 1 isoform a [Macaca mulatta]
gi|384948416|gb|AFI37813.1| polypyrimidine tract-binding protein 1 isoform a [Macaca mulatta]
Length = 556
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 349
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 350 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 408
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 409 GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 467
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E
Sbjct: 468 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 527
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 528 EAVQALIDLHNHDLGENHHLRVSFSK 553
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSNSAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 139
>gi|4506243|ref|NP_002810.1| polypyrimidine tract-binding protein 1 isoform a [Homo sapiens]
gi|332850812|ref|XP_001172084.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Pan
troglodytes]
gi|32354|emb|CAA47386.1| nuclear ribonucleoprotein [Homo sapiens]
gi|35772|emb|CAA46444.1| polypirimidine tract binding protein [Homo sapiens]
gi|12803183|gb|AAH02397.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|15489171|gb|AAH13694.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|30582477|gb|AAP35465.1| polypyrimidine tract binding protein 1 [Homo sapiens]
gi|61359435|gb|AAX41718.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|61359442|gb|AAX41719.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|119581558|gb|EAW61154.1| polypyrimidine tract binding protein 1, isoform CRA_c [Homo
sapiens]
gi|410218528|gb|JAA06483.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
gi|410301208|gb|JAA29204.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 557
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 409
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 410 GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 468
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E
Sbjct: 469 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 528
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 529 EAVQALIDLHNHDLGENHHLRVSFSK 554
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|14165466|ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]
gi|332850814|ref|XP_003316017.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Pan
troglodytes]
gi|131528|sp|P26599.1|PTBP1_HUMAN RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=57 kDa RNA-binding protein PPTB-1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|35768|emb|CAA43973.1| polypirimidine tract binding protein [Homo sapiens]
gi|35774|emb|CAA43056.1| polypyrimidine tract-binding protein (pPTB) [Homo sapiens]
gi|4096061|gb|AAC99798.1| PTB_HUMAN [Homo sapiens]
gi|13325140|gb|AAH04383.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|119581559|gb|EAW61155.1| polypyrimidine tract binding protein 1, isoform CRA_d [Homo
sapiens]
gi|261860774|dbj|BAI46909.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|410218530|gb|JAA06484.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
gi|410301206|gb|JAA29203.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 531
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 413 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|119581562|gb|EAW61158.1| polypyrimidine tract binding protein 1, isoform CRA_g [Homo
sapiens]
Length = 501
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 87 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 146
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 204
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 205 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 263
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 264 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 322
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 323 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 382
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 383 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 441
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 442 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 498
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 67
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 68 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 110
>gi|402903488|ref|XP_003914597.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Papio
anubis]
gi|380814966|gb|AFE79357.1| polypyrimidine tract-binding protein 1 isoform c [Macaca mulatta]
gi|384948418|gb|AFI37814.1| polypyrimidine tract-binding protein 1 isoform c [Macaca mulatta]
Length = 530
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 351
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 411
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 412 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 470
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 527
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSNSAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 139
>gi|116517301|ref|NP_001070831.1| polypyrimidine tract-binding protein 1 isoform 1 [Mus musculus]
gi|13938631|gb|AAH07472.1| Polypyrimidine tract binding protein 1 [Mus musculus]
gi|26328983|dbj|BAC28230.1| unnamed protein product [Mus musculus]
gi|26334239|dbj|BAC30837.1| unnamed protein product [Mus musculus]
gi|26335929|dbj|BAC31665.1| unnamed protein product [Mus musculus]
gi|26341260|dbj|BAC34292.1| unnamed protein product [Mus musculus]
gi|26353506|dbj|BAC40383.1| unnamed protein product [Mus musculus]
gi|74191391|dbj|BAE30277.1| unnamed protein product [Mus musculus]
gi|148699699|gb|EDL31646.1| mCG13402, isoform CRA_c [Mus musculus]
Length = 555
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/505 (34%), Positives = 265/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 467
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+
Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 527
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 528 AVQALIELHNHDLGENHHLRVSFSK 552
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|19911240|dbj|BAB86943.1| polypirimidine tract binding protein [Mus musculus]
Length = 528
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 268/475 (56%), Gaps = 55/475 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAASTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPNYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L + FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRVDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA--------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 351
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH +
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 411
Query: 322 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 412 VQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFLPSATLHLSNIPPSVSEDDLKS 470
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 LFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGEHHLRVSFSK 525
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A+ + A L G I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAASTMVNYYTSVAPVLRGQPNYIQFSNHKELKTDS 139
>gi|148699697|gb|EDL31644.1| mCG13402, isoform CRA_b [Mus musculus]
Length = 499
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 269/476 (56%), Gaps = 56/476 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 26 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 85
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 86 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 145
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 146 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 203
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 204 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 262
Query: 210 YSEAGVAFPQMANA--------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 263 AAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 321
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH +
Sbjct: 322 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 381
Query: 322 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 382 VQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKS 440
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 441 LFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 496
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 1 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 58
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 59 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 109
>gi|397524|emb|CAA52653.1| polypyrimidine tract binding protein [Rattus norvegicus]
Length = 556
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/506 (33%), Positives = 265/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
P++VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PTRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALRASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 349
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALV+M D
Sbjct: 350 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMAD 408
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF +
Sbjct: 409 GSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPG 467
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E
Sbjct: 468 SKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 527
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 528 EAVQALIELHNHDLGENHHLRVSFSK 553
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R PT++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPTRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|73987389|ref|XP_542215.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Canis
lupus familiaris]
Length = 557
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 409
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 410 GSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 468
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+E+++ +G IV F +K AL+ + E
Sbjct: 469 SKNFQNIFPPSATLHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVE 528
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 529 EAIQALIDLHNHDLGENHHLRVSFSK 554
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|402743987|ref|NP_001257986.1| polypyrimidine tract-binding protein 1 isoform a [Rattus
norvegicus]
gi|38197632|gb|AAH61858.1| Ptbp1 protein [Rattus norvegicus]
gi|149034647|gb|EDL89384.1| polypyrimidine tract binding protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 556
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/506 (34%), Positives = 265/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 349
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 350 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 408
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF +
Sbjct: 409 GSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPG 467
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E
Sbjct: 468 SKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 527
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 528 EAVQALIELHNHDLGENHHLRVSFSK 553
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|73987401|ref|XP_868641.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 8 [Canis
lupus familiaris]
Length = 531
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 413 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G IV F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 ILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|55824722|gb|AAH86489.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/505 (34%), Positives = 265/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIGFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 467
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+
Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 527
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 528 AVQALIELHNHDLGENHHLRVSFSK 552
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|149034650|gb|EDL89387.1| polypyrimidine tract binding protein 1, isoform CRA_d [Rattus
norvegicus]
Length = 500
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 270/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 26 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 85
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 86 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 145
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 146 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 203
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 204 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 262
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 263 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 321
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 322 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQ 381
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
++ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 382 SVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 440
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
S +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 441 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 497
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 1 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 58
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 59 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 109
>gi|116517303|ref|NP_032982.2| polypyrimidine tract-binding protein 1 isoform 2 [Mus musculus]
gi|26336949|dbj|BAC32158.1| unnamed protein product [Mus musculus]
gi|26342100|dbj|BAC34712.1| unnamed protein product [Mus musculus]
gi|26349809|dbj|BAC38544.1| unnamed protein product [Mus musculus]
gi|74211646|dbj|BAE29183.1| unnamed protein product [Mus musculus]
gi|74212275|dbj|BAE40295.1| unnamed protein product [Mus musculus]
gi|148699696|gb|EDL31643.1| mCG13402, isoform CRA_a [Mus musculus]
gi|148699698|gb|EDL31645.1| mCG13402, isoform CRA_a [Mus musculus]
Length = 529
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 269/476 (56%), Gaps = 56/476 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA--------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 351
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH +
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 411
Query: 322 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 412 VQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKS 470
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 LFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 526
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|402765974|ref|NP_071961.2| polypyrimidine tract-binding protein 1 isoform b [Rattus
norvegicus]
gi|149034649|gb|EDL89386.1| polypyrimidine tract binding protein 1, isoform CRA_c [Rattus
norvegicus]
Length = 530
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 270/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 351
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQ 411
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
++ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 412 SVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 470
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
S +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 527
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|125827109|ref|XP_001335967.1| PREDICTED: regulator of differentiation 1 [Danio rerio]
Length = 522
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 174/495 (35%), Positives = 262/495 (52%), Gaps = 72/495 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR V E+SE +++ L PFG +T L+ML+ KNQA ++M +A+ + +YT
Sbjct: 27 PSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKGKNQAFIEMASEEAAMTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR---------------------------GDE 96
P +R + VY+Q+S+H+EL T QGR G
Sbjct: 87 ATPHVRNQPVYIQYSNHRELKTDNLPNQGRAQAALQAVNAVHTGNMSLSGTATASDGGMM 146
Query: 97 PNR--ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P + +L + + ++ YP+++EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIVENLYYPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+GCC L ++FS L L V YNN++SRDFT +LP+ G+P+ Q+
Sbjct: 207 KVALDGQNIYNGCCTLRVEFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPTLDPTMQTA 265
Query: 210 YSEAGVAFPQMANAAAIAAAFG------------GGLPP---------------GITGTN 242
+ G+ AA A A G G L P G+T T
Sbjct: 266 FGAPGIISSPYPGAAGFAPAIGFPQAGLSMQAMPGALGPLTIPSSAMTGRMAIHGMTPTA 325
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
+LVSNLN D I +LF LF +YG++ R+K+L NK ++AL+QM D QA+LA+ L
Sbjct: 326 IHSVLLVSNLNPDSISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHL 385
Query: 303 KGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
G L+GK + V SKH + QG T ++ S L+RF + +KN++ P+
Sbjct: 386 NGQRLYGKVIRVTISKHQTVQLPREGQEDQGL-TKDFSGSPLHRFKKPGSKNFQNIFPPS 444
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P T++ + G V F +K AL+ + E+A +AL+ H
Sbjct: 445 ATLHLSNIPPSTTDDFLKDLFASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHN 504
Query: 415 SSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 505 HDLGENHHLRVSFSK 519
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R C+P++++H+ +P +V+E E+VS G + N L + GK QA + +EE
Sbjct: 19 KGDRSPCAPSRVLHVRKVPIEVSEAEVVSLGVPFGKVTN--LLMLKGKNQAFIEMASEEA 76
Query: 405 A 405
A
Sbjct: 77 A 77
>gi|74196849|dbj|BAE43140.1| unnamed protein product [Mus musculus]
Length = 530
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 351
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQ 411
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
++ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 412 SVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 470
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
S +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 527
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|157838029|ref|NP_001093477.1| polypyrimidine tract-binding protein 2 [Danio rerio]
Length = 538
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 169/489 (34%), Positives = 264/489 (53%), Gaps = 65/489 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+VIH+R + +E+SE +++ L PFG +T ++ML+ KNQA L++ +A+ + +Y
Sbjct: 50 SPPSRVIHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYY 109
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT---MEQNAQG---------RGDEPNR---------- 99
T V P +R V++Q+S+H+EL T + Q AQ G P+
Sbjct: 110 TAVTPQVRNVPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQEGGSPSSDMASKSVLTP 169
Query: 100 ----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+L + I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ +A A+
Sbjct: 170 APSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAK 229
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGY 210
SL G+NIY+ CC L I FS L L V YNN++SRD+T P LPA G+P +
Sbjct: 230 LSLDGQNIYNSCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGD-GQPPVDPSMAAAL 288
Query: 211 SEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRC----------------------TVL 248
S+ + + + + GGG P + + +L
Sbjct: 289 SKDSPSLLGTPSGMVTSYSSGGGFPSSLGAISPLSAAAAAAAAAGRVALSGHSVPGGVLL 348
Query: 249 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF 308
VSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG QA+LA+ L G ++
Sbjct: 349 VSNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDGNQAQLAMSHLNGQKMY 408
Query: 309 GKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLST 361
GK + V SKH + +G D T ++ +S L+RF + +KN++ P+ +HLS
Sbjct: 409 GKIIRVTLSKHQTVQLPREGLDDQGLTKDFTSSPLHRFKKPGSKNFQNIFPPSATLHLSN 468
Query: 362 LPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLG-G 419
+P +VTEE++ G V K F+ +K +L+ T E+A +AL+ H +G G
Sbjct: 469 IPDNVTEEDLRLLFSNSGGTVKAFKFFQ--DRKMSLLQMATAEEAIQALIDLHNYDMGRG 526
Query: 420 SIIRISFSQ 428
+R+SFS+
Sbjct: 527 HRLRVSFSK 535
>gi|74178228|dbj|BAE29899.1| unnamed protein product [Mus musculus]
Length = 529
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 269/476 (56%), Gaps = 56/476 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLGGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA--------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 351
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH +
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 411
Query: 322 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 412 VQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKS 470
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 LFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 526
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|410928343|ref|XP_003977560.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Takifugu
rubripes]
Length = 534
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 174/487 (35%), Positives = 255/487 (52%), Gaps = 65/487 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKV+H+R + +I+E +++ L PFG ++ L+ML+ KNQA L+M +A N + +Y+
Sbjct: 48 PSKVVHIRKLPDDITETEVISLGLPFGNVSNLLMLKTKNQAFLEMNCEDAACNMVGYYST 107
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNR----------------ILLVTIHH 107
V P IR + VYVQFS+H+EL T Q R R +L V + +
Sbjct: 108 VMPVIRHQPVYVQFSNHKELKTDNSPNQERAQAALRAFGASHMAPCAVASSSVLRVVVEN 167
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
+LYP++++ L Q+FS G V +I+ F K++ FQAL+QY A A+ SL G+NIY+ C
Sbjct: 168 LLYPVSLDALCQIFSKFGTVLRIIVFTKNSQFQALLQYPDAACAQAAKLSLDGQNIYNAC 227
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLP----------------------------- 198
C L I FS L L V YNNE+SRDFT P+LP
Sbjct: 228 CTLRISFSKLTSLNVKYNNEKSRDFTRPDLPPGDGQPTLEHPSMAAAFAAPGIISAAPYA 287
Query: 199 -AEQKGRPSQS-----GYSEAGVAFPQMANA---AAIAAAFGGGLPPGITGTNDRCTVLV 249
A Q PS + AGV P + A ++A A G P G C +LV
Sbjct: 288 GAAQTFSPSYTIQPAVFLPPAGVTVPALPGALTSLSLAGAARMGFPSLPAGV---CVLLV 344
Query: 250 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 309
SNL+ +R+ LF LF +YG+++R+K+L NK + ALVQM D QA+LA+ L G L+G
Sbjct: 345 SNLHPERVTPHCLFILFGVYGDVMRVKILFNKKETALVQMSDSTQAQLAMSHLNGQKLYG 404
Query: 310 KRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362
+ + + SKH ++ + HE + NS L+RF + +KNY P+ +HLS +
Sbjct: 405 RAVRITVSKHMSVQLPREGHEDQGLTKDFSNSPLHRFKKPGSKNYSNIFPPSATLHLSNI 464
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSI 421
P V E+++ G+ V F K AL+ + E+A EAL+ H LG
Sbjct: 465 PPCVVEDDLKMLFSSSGAEVKAFKFFQKDHKMALIQMGSVEEAIEALIEFHNHDLGENHH 524
Query: 422 IRISFSQ 428
+R+SFS+
Sbjct: 525 LRVSFSK 531
>gi|354480918|ref|XP_003502650.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
Length = 591
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 265/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 92 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 151
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 152 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 211
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 212 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 269
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 270 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 328
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 329 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAGR 385
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 386 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 444
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 445 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 503
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ + +G +V F +K AL+ + E+
Sbjct: 504 KNFQNIFPPSATLHLSNIPPSVSEDDLKNLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 563
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 564 AVQALIELHNHDLGENHHLRVSFSK 588
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 67 MSSSTSAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 124
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 125 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 175
>gi|14165464|ref|NP_114367.1| polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
gi|332850820|ref|XP_003316018.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Pan
troglodytes]
gi|35770|emb|CAA46443.1| polypirimidine tract binding protein [Homo sapiens]
gi|119581556|gb|EAW61152.1| polypyrimidine tract binding protein 1, isoform CRA_a [Homo
sapiens]
gi|410218532|gb|JAA06485.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 550
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 177/497 (35%), Positives = 265/497 (53%), Gaps = 78/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAA-----AIAAAFGGGLP--------------------------PGITG 240
A A P A A AI A G +P PG+ G
Sbjct: 294 AAAFASP-YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 352
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 353 AGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 411
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 412 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFP 470
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +AL+
Sbjct: 471 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 530
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 531 HNHDLGENHHLRVSFSK 547
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|395831594|ref|XP_003788880.1| PREDICTED: polypyrimidine tract-binding protein 1 [Otolemur
garnettii]
Length = 582
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 175/499 (35%), Positives = 267/499 (53%), Gaps = 82/499 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 89 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 148
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 149 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 208
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 209 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 266
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----- 206
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 267 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 325
Query: 207 QSGYSE--AGVAFPQMANAAAIAAAFGGGLP--------------------------PGI 238
+ ++ AG FP AI A G +P PG+
Sbjct: 326 AAAFASPYAGAGFPP---TFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGL 382
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D QA+LA
Sbjct: 383 AGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADANQAQLA 441
Query: 299 VHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYC 350
+ L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 442 MSHLSGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNI 500
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+ +HLS +P ++EE++ +G +V F N +K AL+ + E+A +AL+
Sbjct: 501 FPPSATLHLSNIPPSISEEDLKILFSSNGGVVKGFKFFQNDRKMALIQMGSVEEAVQALI 560
Query: 411 CKHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 561 DLHNHDLGENHHLRVSFSK 579
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 72 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 129
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 130 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 172
>gi|74152131|dbj|BAE32096.1| unnamed protein product [Mus musculus]
Length = 555
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 265/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + ++T+
Sbjct: 56 PSRVIHVRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYFTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 467
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+
Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 527
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 528 AVQALIELHNHDLGENHHLRVSFSK 552
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPGDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYFTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|402903490|ref|XP_003914598.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Papio
anubis]
Length = 549
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 177/497 (35%), Positives = 265/497 (53%), Gaps = 78/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAA-----AIAAAFGGGLP--------------------------PGITG 240
A A P A A AI A G +P PG+ G
Sbjct: 293 AAAFASP-YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 351
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 352 AGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 410
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 411 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFP 469
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +AL+
Sbjct: 470 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 529
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 530 HNHDLGENHHLRVSFSK 546
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSNSAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 139
>gi|344243367|gb|EGV99470.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 528
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 265/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 29 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 88
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 89 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 148
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 149 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 206
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 207 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 265
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 266 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAGR 322
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 323 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 381
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 382 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 440
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ + +G +V F +K AL+ + E+
Sbjct: 441 KNFQNIFPPSATLHLSNIPPSVSEDDLKNLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 500
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 501 AVQALIELHNHDLGENHHLRVSFSK 525
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 12 NGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 69
Query: 396 LVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ TEE A + A L G I I FS + ++ +S
Sbjct: 70 FIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 112
>gi|426330458|ref|XP_004026228.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 3
[Gorilla gorilla gorilla]
Length = 548
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 127
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 128 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 187
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 188 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 247
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 248 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 306
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 307 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 365
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 366 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 425
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 426 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 485
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 486 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 545
>gi|345306392|ref|XP_001508115.2| PREDICTED: polypyrimidine tract-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 606
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 263/478 (55%), Gaps = 58/478 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 131 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 190
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + VY+Q+S+H+EL T+ Q AQ + P
Sbjct: 191 VTPHLRNQPVYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 250
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 251 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 310
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 311 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 367
Query: 217 FPQMANAAAIAAAFGG------------------GLPPGITGTNDRCTVLVSNLNSDRID 258
F + + A+ A GLP G N +LVSNLN + +
Sbjct: 368 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGLPGVSAGGN--TVLLVSNLNEEMVT 425
Query: 259 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SK
Sbjct: 426 PQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 485
Query: 319 HPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 371
H + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 486 HQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDL 545
Query: 372 VSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 546 RTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 603
>gi|47523538|ref|NP_999396.1| polypyrimidine tract-binding protein 1 [Sus scrofa]
gi|2500586|sp|Q29099.1|PTBP1_PIG RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|1122433|emb|CAA63597.1| polypyrimidine tract-binding protein [Sus scrofa]
Length = 557
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 178/504 (35%), Positives = 265/504 (52%), Gaps = 85/504 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------A 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP A
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMA 294
Query: 200 EQKGRP---SQSGYSEAG----VAFPQMANAAAIAAAFGGGLPP---------------- 236
G P S S Y+ AG A PQ A + G L P
Sbjct: 295 AAFGAPGIMSASPYAGAGFPPTFAIPQAATVS--VPNVHGALAPLAIPSAAARAAAAGRI 352
Query: 237 ---GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G+ G + +LVSNLN +R+ LF LF +Y ++ R+K+L NK ++ALVQM DG
Sbjct: 353 AIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGS 411
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAK 345
QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +K
Sbjct: 412 QAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSK 470
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N++ P+ +HLS +P ++EE++ +G IV F +K AL+ + E+A
Sbjct: 471 NFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEA 530
Query: 406 TEALVCKHASSLG-GSIIRISFSQ 428
+AL+ H LG +R+SFS+
Sbjct: 531 IQALIDLHNHDLGENHHLRVSFSK 554
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|332809593|ref|XP_003308280.1| PREDICTED: polypyrimidine tract-binding protein 2 [Pan troglodytes]
gi|397474051|ref|XP_003808504.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 3 [Pan
paniscus]
Length = 548
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 127
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 128 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 187
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 188 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 247
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 248 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 306
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 307 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 365
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 366 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 425
Query: 317 SKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 426 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 485
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 486 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 545
>gi|119581561|gb|EAW61157.1| polypyrimidine tract binding protein 1, isoform CRA_f [Homo
sapiens]
Length = 520
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/497 (35%), Positives = 265/497 (53%), Gaps = 78/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 87 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 146
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 204
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 205 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 263
Query: 212 EAGVAFPQMANAA-----AIAAAFGGGLP--------------------------PGITG 240
A A P A A AI A G +P PG+ G
Sbjct: 264 AAAFASP-YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 322
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 323 AGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 381
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 382 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFP 440
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +AL+
Sbjct: 441 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 500
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 501 HNHDLGENHHLRVSFSK 517
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 67
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 68 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 110
>gi|194389558|dbj|BAG61740.1| unnamed protein product [Homo sapiens]
Length = 548
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 127
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 128 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 187
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 188 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 247
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 248 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 306
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 307 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 365
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 366 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 425
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 426 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 485
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 486 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 545
>gi|440902651|gb|ELR53420.1| Polypyrimidine tract-binding protein 2, partial [Bos grunniens
mutus]
Length = 524
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 44 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 103
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 104 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 163
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 164 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 223
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 224 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 282
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 283 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 341
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 342 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 401
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 402 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 461
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 462 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 521
>gi|57002|emb|CAA43202.1| pyrimidine binding protein 1 [Rattus norvegicus]
Length = 530
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 270/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 351
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALV+M DG QA+LA+ L G L GK + + SKH
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQ 411
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
++ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 412 SVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 470
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
S +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 527
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|351704481|gb|EHB07400.1| Polypyrimidine tract-binding protein 2 [Heterocephalus glaber]
Length = 539
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/483 (35%), Positives = 265/483 (54%), Gaps = 61/483 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 295
Query: 217 -------FPQMANAAAI----------------AAAFGGGLPPGITGTNDRCTVLVSNLN 253
P A A+ AAA G+P G N +LVSNLN
Sbjct: 296 KETSLLGLPVAAVPGALSPLAIPNAXXXXXXXXAAAGRVGMPGVSAGGN--TVLLVSNLN 353
Query: 254 SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE 313
+ + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK +
Sbjct: 354 EEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIR 413
Query: 314 VNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV 366
V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V
Sbjct: 414 VTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV 473
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRIS 425
EE++ + G V F K AL+ T E+A +AL+ H +LG + +R+S
Sbjct: 474 AEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVS 533
Query: 426 FSQ 428
FS+
Sbjct: 534 FSK 536
>gi|157137151|ref|XP_001663911.1| polypyrimidine tract binding protein [Aedes aegypti]
gi|108869791|gb|EAT34016.1| AAEL013723-PA [Aedes aegypti]
Length = 539
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 180/525 (34%), Positives = 263/525 (50%), Gaps = 99/525 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+V+H+RN+ +E SE D++ L PFG +T +++L+ KNQA L+M D +A + + +T
Sbjct: 12 KPSRVVHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKGKNQAFLEMADETAATSMVTMFT 71
Query: 63 NVQPTIRGRNVYVQFSSHQELTT---------------MEQNAQGR-------------- 93
P +RGR VYVQFS+H+EL T + Q+ G
Sbjct: 72 ATPPIVRGRTVYVQFSNHRELKTDQNHTATNVTLQTQDLTQSPTGSPLPLALDHANTNSN 131
Query: 94 ---------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG 138
PN +L V + +LYP+++++L+Q+F G V KIVTF K+
Sbjct: 132 PGTGTVGGTLGGATTQGGPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNS 191
Query: 139 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
FQALIQY +A +A+ +L G+NIY+GCC L I S L L V YNN++SRD+TNP LP
Sbjct: 192 FQALIQYPDAATAQLAKQTLDGQNIYNGCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLP 251
Query: 199 AEQKGR---PSQSGYSEAGVAF-------PQMA---------------------NAAAIA 227
+ + G S G AG PQ+A A+A
Sbjct: 252 SGEPGSDVIASAGGLVSAGDLLLLAAGQRPQLARDRLVNGLATPGVIPPFGLGLGTPALA 311
Query: 228 AAFGGGLP---------PGITGTNDRC-------TVLVSNLNSDRIDEDKLFNLFSLYGN 271
+A+GG LP G GT + +LVSNLN + + D LF LF +YG+
Sbjct: 312 SAYGGALPNLGAFALASNGALGTPNPSVLRGLSNVLLVSNLNEEMVTPDALFTLFGVYGD 371
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQ 324
+ R+K+L NK D AL+QM + QA LA+ L ++ K + V SKH +
Sbjct: 372 VQRVKILYNKKDSALIQMAEPHQAYLAMTHLDKLRIWNKTIRVMASKHQAVQLPKEGQPD 431
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
T +Y + L+RF + +KNY+ P+ +HLS +P VTEEEI ++G V
Sbjct: 432 AGLTRDYAQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPATVTEEEIKEAFTKNGFEVKA 491
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
F K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 492 FKFFPKDHKMALIQLSSIEEAVCALIKMHNYQLSESNHLRVSFSK 536
>gi|449508136|ref|XP_002190438.2| PREDICTED: polypyrimidine tract-binding protein 2 [Taeniopygia
guttata]
Length = 537
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/482 (34%), Positives = 262/482 (54%), Gaps = 61/482 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQASNAPISGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+Q+ +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQFGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KQALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPTLDPAIAAA 293
Query: 215 VAFPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNS 254
A +AA G P PG++ + +LVSNLN
Sbjct: 294 FAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNE 352
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
+ + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA+ L G ++GK + V
Sbjct: 353 EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKMYGKIIRV 412
Query: 315 NFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SKH ++ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V
Sbjct: 413 TLSKHQSVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVA 472
Query: 368 EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISF 426
EE++ + G V F K AL+ T E+A +AL+ H +LG S +R+SF
Sbjct: 473 EEDLRTLFANTGGTVKAFKFFQRDHKMALLQMSTVEEAIQALIDLHNYNLGESHHLRVSF 532
Query: 427 SQ 428
S+
Sbjct: 533 SK 534
>gi|426229469|ref|XP_004008813.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Ovis
aries]
Length = 557
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/506 (33%), Positives = 264/506 (52%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMAD 409
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH ++ QG T +Y NS L+RF +
Sbjct: 410 GSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 468
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P ++E+++ +G IV F +K AL+ + E
Sbjct: 469 SKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVE 528
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 529 EAIQALIDLHNHDLGENHHLRVSFSK 554
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
DG ++AV +G+ + + P I G ++ +F ++ R
Sbjct: 2 DGIVPDIAVGTKRGS---DELFSACVTNGPFIMSGTSASTANGNDSKKFKGDS----RSA 54
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 55 GVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMV 111
Query: 411 CKHAS---SLGGSIIRISFSQLQSIRENS 436
+ S L G I I FS + ++ +S
Sbjct: 112 NYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|334324359|ref|XP_001381834.2| PREDICTED: polypyrimidine tract-binding protein 2-like [Monodelphis
domestica]
Length = 640
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ SAI + +Y+
Sbjct: 160 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEESAITMVNYYSA 219
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 220 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 279
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 280 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 339
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 340 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 398
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 399 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 457
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 458 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 517
Query: 317 SKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 518 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 577
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 578 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 637
>gi|20809354|gb|AAH28848.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 264/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ L LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLLILFGVYGDVQRVKILFNKKENALVQMADG 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 467
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+
Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 527
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 528 AVQALIELHNHDLGENHHLRVSFSK 552
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|301758643|ref|XP_002915171.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Ailuropoda
melanoleuca]
gi|395730215|ref|XP_002810624.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pongo
abelii]
gi|22218304|gb|AAM94624.1| non-neuronal splice variant nPTB3 [Homo sapiens]
gi|119593414|gb|EAW73008.1| polypyrimidine tract binding protein 2, isoform CRA_d [Homo
sapiens]
Length = 537
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 263/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 295
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 296 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 354
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 355 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 414
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 415 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 474
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 475 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 534
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|431896401|gb|ELK05813.1| Polypyrimidine tract-binding protein 2 [Pteropus alecto]
Length = 485
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 5 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 64
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 65 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 124
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 125 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 184
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 185 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 243
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 244 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 302
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 303 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 362
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 363 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 422
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 423 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 482
>gi|281349698|gb|EFB25282.1| hypothetical protein PANDA_003123 [Ailuropoda melanoleuca]
Length = 501
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 263/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 21 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 80
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 81 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 140
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 141 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 200
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 201 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 259
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 260 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 318
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 319 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 378
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 379 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 438
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 439 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 498
>gi|73987397|ref|XP_868637.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 6 [Canis
lupus familiaris]
Length = 550
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/497 (35%), Positives = 265/497 (53%), Gaps = 78/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAA-----AIAAAFGGGLP--------------------------PGITG 240
A A P A A AI A G +P PG+ G
Sbjct: 294 AAAFASP-YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 352
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 353 AGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMS 411
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 412 HLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFP 470
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V+E+++ +G IV F +K AL+ + E+A +AL+
Sbjct: 471 PSATLHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDL 530
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 531 HNHDLGENHHLRVSFSK 547
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|16580749|dbj|BAB71742.1| PTB-like protein L [Homo sapiens]
gi|16741546|gb|AAH16582.1| Polypyrimidine tract binding protein 2 [Homo sapiens]
gi|119593413|gb|EAW73007.1| polypyrimidine tract binding protein 2, isoform CRA_c [Homo
sapiens]
gi|123980248|gb|ABM81953.1| polypyrimidine tract binding protein 2 [synthetic construct]
gi|157928112|gb|ABW03352.1| polypyrimidine tract binding protein 2 [synthetic construct]
gi|410216174|gb|JAA05306.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
gi|410328831|gb|JAA33362.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
Length = 532
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 293
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 294 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 352
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 353 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 412
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 413 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 472
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 473 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 529
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|403283993|ref|XP_003933374.1| PREDICTED: polypyrimidine tract-binding protein 2 [Saimiri
boliviensis boliviensis]
Length = 577
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 102 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 161
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 162 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 221
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 222 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 281
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 282 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 338
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 339 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 397
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 398 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 457
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 458 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 517
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 518 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 574
>gi|148680405|gb|EDL12352.1| polypyrimidine tract binding protein 2, isoform CRA_b [Mus
musculus]
Length = 529
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 265/479 (55%), Gaps = 60/479 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 113
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 114 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 173
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 174 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 231
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 232 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 289
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 290 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 347
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 348 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 407
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 408 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 467
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 468 LRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 526
>gi|9507003|ref|NP_062423.1| polypyrimidine tract-binding protein 2 [Mus musculus]
gi|8358154|gb|AAF21807.2|AF095718_1 RRM-type RNA-binding protein brPTB [Mus musculus]
gi|5824110|emb|CAB54073.1| PTB-like protein [Rattus rattus]
gi|22711857|tpg|DAA00061.1| TPA_exp: splicing regulator nPTB2 [Mus musculus]
gi|74209570|dbj|BAE23317.1| unnamed protein product [Mus musculus]
Length = 532
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 265/479 (55%), Gaps = 60/479 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 529
>gi|348586487|ref|XP_003479000.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Cavia
porcellus]
Length = 581
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 265/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 106 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 165
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 166 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 225
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 226 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 285
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 286 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALD--PAIAAA 342
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 343 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 401
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 402 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 461
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 462 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 521
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 522 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 578
>gi|25392158|pir||JC7526 polypyrimidine tract-binding protein-like protein - rat
Length = 532
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 265/479 (55%), Gaps = 60/479 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQEDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 529
>gi|73959499|ref|XP_866820.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 4 [Canis
lupus familiaris]
gi|119593416|gb|EAW73010.1| polypyrimidine tract binding protein 2, isoform CRA_f [Homo
sapiens]
Length = 480
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 265/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 5 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 64
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 65 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 124
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 125 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 184
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 185 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 241
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 242 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 300
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 301 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 360
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 361 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 420
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 421 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 477
>gi|402855348|ref|XP_003892288.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Papio
anubis]
Length = 506
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 85
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 86 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 145
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 205
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 206 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 264
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 265 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 323
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 324 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 383
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 384 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 443
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 444 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 503
>gi|354504008|ref|XP_003514071.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Cricetulus
griseus]
Length = 501
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 85
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 86 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 145
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 205
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 206 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 262
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 263 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 321
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 322 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 381
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 382 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 441
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 442 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 498
>gi|297279326|ref|XP_001105013.2| PREDICTED: polypyrimidine tract-binding protein 2-like isoform 2
[Macaca mulatta]
gi|332809591|ref|XP_001158089.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 7 [Pan
troglodytes]
gi|395730217|ref|XP_003775687.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Pongo
abelii]
gi|397474049|ref|XP_003808503.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Pan
paniscus]
gi|426330456|ref|XP_004026227.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 540
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 124
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 125 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 184
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 245 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 301
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 302 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 360
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 361 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 420
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 421 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 480
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 481 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 537
>gi|355745467|gb|EHH50092.1| hypothetical protein EGM_00861, partial [Macaca fascicularis]
Length = 529
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 113
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 114 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 173
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 174 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 233
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 234 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 290
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 291 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 349
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 350 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 409
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 410 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 469
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 470 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 526
>gi|410967802|ref|XP_003990404.1| PREDICTED: polypyrimidine tract-binding protein 2 [Felis catus]
Length = 566
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 91 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 150
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 151 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 210
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 211 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 270
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 271 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 327
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 328 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 386
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 387 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 446
Query: 320 PNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 447 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 506
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 507 TLFANTGGTVKAFKFFSKDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 563
>gi|345801647|ref|XP_003434832.1| PREDICTED: polypyrimidine tract-binding protein 2 [Canis lupus
familiaris]
Length = 540
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 124
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 125 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 184
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 245 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 301
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 302 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 360
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 361 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 420
Query: 320 PNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 421 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 480
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 481 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 537
>gi|395821709|ref|XP_003784179.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Otolemur garnettii]
Length = 540
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 265/479 (55%), Gaps = 60/479 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 124
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 125 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTASTPLSGTTVSESAVTPA 184
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 185 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 242
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 243 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 300
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 301 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 358
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 359 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 418
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 419 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 478
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 479 LRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 537
>gi|395750059|ref|XP_003779055.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Pongo abelii]
Length = 782
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/505 (35%), Positives = 266/505 (52%), Gaps = 87/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 282 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 341
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 342 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 401
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 402 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 459
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK--------- 202
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ ++
Sbjct: 460 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGRQPALAWDQNH 519
Query: 203 -GRPSQSGYSE---AGVAFPQMANAAAIAAAFGGGLP----------------------- 235
RP S AG FP AI A G +P
Sbjct: 520 GPRPXXXXISASPYAGAGFPP---TFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGR 576
Query: 236 ---PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 577 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 635
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +
Sbjct: 636 NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGS 694
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E+
Sbjct: 695 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 754
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 755 AVQALIDLHNHDLGENHHLRVSFSK 779
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 265 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 322
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 323 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 365
>gi|27806103|ref|NP_776867.1| polypyrimidine tract-binding protein 1 [Bos taurus]
gi|426229471|ref|XP_004008814.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Ovis
aries]
gi|75073578|sp|Q8WN55.1|PTBP1_BOVIN RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB
gi|17298537|gb|AAL38169.1|AF445640_1 polypyrimidine-tract binding protein [Bos taurus]
gi|296485353|tpg|DAA27468.1| TPA: polypyrimidine tract-binding protein 1 [Bos taurus]
Length = 531
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
++ QG T +Y NS L+RF + +KN++ P+ +HLS +P ++E+++
Sbjct: 413 SVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G IV F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 ILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
DG ++AV +G+ + + P I G ++ +F ++ R
Sbjct: 2 DGIVPDIAVGTKRGS---DELFSACVTNGPFIMSGTSASTANGNDSKKFKGDS----RSA 54
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 55 GVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMV 111
Query: 411 CKHAS---SLGGSIIRISFSQLQSIRENS 436
+ S L G I I FS + ++ +S
Sbjct: 112 NYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|332221975|ref|XP_003260140.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 4
[Nomascus leucogenys]
Length = 568
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 262/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 88 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 147
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 148 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 207
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 208 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 267
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 268 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 326
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 327 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 385
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 386 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 445
Query: 317 SKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 446 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 505
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 506 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 565
>gi|426216016|ref|XP_004002265.1| PREDICTED: polypyrimidine tract-binding protein 2 [Ovis aries]
Length = 510
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/483 (34%), Positives = 261/483 (54%), Gaps = 62/483 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 29 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 88
Query: 64 VQPTIRGRNVYVQFSSHQEL------------------------------TTMEQNAQGR 93
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 89 VTPHLRNQPIYIQYSNHKELKTDNTLNQARAQAVLQAVTAVQTASTPLSGTTVSESAVTP 148
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 149 AQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQ 206
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 207 AKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA 265
Query: 214 GVAFPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLN 253
A +AA G P PG++ + +LVSNLN
Sbjct: 266 AFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLN 324
Query: 254 SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE 313
+ + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK +
Sbjct: 325 EEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIR 384
Query: 314 VNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV 366
V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V
Sbjct: 385 VTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV 444
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRIS 425
EE++ + G V F K AL+ T E+A +AL+ H +LG +R+S
Sbjct: 445 AEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVS 504
Query: 426 FSQ 428
FS+
Sbjct: 505 FSK 507
>gi|42490826|gb|AAH66210.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 264/505 (52%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNL +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLYPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +
Sbjct: 409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGS 467
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+
Sbjct: 468 KNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 527
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A +AL+ H LG +R+SFS+
Sbjct: 528 AVQALIELHNHDLGENHHLRVSFSK 552
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|194389592|dbj|BAG61757.1| unnamed protein product [Homo sapiens]
Length = 540
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 56/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKEKNQAFLELATEEAAITMVNYYSA 124
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 125 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 184
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 245 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 301
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 302 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 360
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 361 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 420
Query: 320 PNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 421 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 480
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 481 TLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 537
>gi|344293564|ref|XP_003418492.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Loxodonta
africana]
Length = 686
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 263/480 (54%), Gaps = 57/480 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 206 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 265
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 266 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 325
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 326 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 385
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 386 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 444
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 445 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 503
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 504 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 563
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 564 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 623
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
++ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 624 DLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 683
>gi|348505292|ref|XP_003440195.1| PREDICTED: regulator of differentiation 1 [Oreochromis niloticus]
Length = 514
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 260/478 (54%), Gaps = 59/478 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + ++SE ++L L PFG ++KL+ L+ KNQA L+M +A+ + +YT+
Sbjct: 40 PSRVLHLRQLPPDVSEQEVLSLALPFGRVSKLITLKTKNQAFLEMASEEAAVTMVNYYTS 99
Query: 64 VQPTIRGRNVYVQFSSHQELTT------------------------MEQNAQGRGDEPNR 99
P+IR + VY+Q+S+H+EL T M +GRG P +
Sbjct: 100 ATPSIRSQPVYIQYSTHRELKTDNMTSQRAQAALQAINAGAVHSGNMTSGGEGRGIAPGQ 159
Query: 100 --ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
+L + + ++ YP+T+EVL Q+FS G V KI+TF ++ FQAL+Q+ A A+++
Sbjct: 160 SPVLRIIVENLFYPVTLEVLQQIFSKFGSVLKIITFTRNNQFQALLQFSDTVHAQHAKAT 219
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAF 217
L G+NIY+GCC L I FS L L V YNN++SRDFT +LP+ + P+ + GVA
Sbjct: 220 LDGQNIYNGCCTLRIDFSKLSALNVKYNNDKSRDFTRADLPSGEL-EPT----AAFGVAL 274
Query: 218 PQMANAAAIAAAF--GGGLP----PGITGTNDRCT-----------VLVSNLNSDRIDED 260
P AAA F GL PG ++ R + +LVSNLN + +
Sbjct: 275 PPYG-AAAFPPTFHQHTGLSMAAVPGSLVSHPRVSLQMAPPVVHSVLLVSNLNPESVTPH 333
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM D QA+LA+ L G L G + V SKHP
Sbjct: 334 CLFILFGVYGDVQRVKILFNKKENALVQMSDATQAQLAMSHLNGQRLHGNVIRVTLSKHP 393
Query: 321 NI---------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 371
+ + A T ++ S L+RF + +KN+ P+ +HLS +P V+EE +
Sbjct: 394 VVQLPRGGAGQEEQALTRDFSGSALHRFKKPGSKNFNNIFPPSATLHLSNIPSSVSEEAL 453
Query: 372 VSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G V F +K AL+ + E+A EAL+ H L +R+SFS+
Sbjct: 454 KDLFSSNGFAVKAFKFFQKDRKMALMQLASVEEAIEALIILHDHQLDHNQHLRVSFSK 511
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
R C P++++HL LP DV+E+E++S G + +KL + K QA + +EE A
Sbjct: 35 RAQCIPSRVLHLRQLPPDVSEQEVLSLALPFGRV--SKLITLKTKNQAFLEMASEEAA 90
>gi|118404352|ref|NP_001072479.1| polypyrimidine tract binding protein 2 [Xenopus (Silurana)
tropicalis]
gi|112418598|gb|AAI21904.1| polypyrimidine tract binding protein 2 [Xenopus (Silurana)
tropicalis]
Length = 531
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 267/477 (55%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +A + +YT
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAASTMVNYYTT 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT---MEQNAQGR------------------------GDE 96
+ P +R + +Y+Q+S+H+EL T + Q AQ
Sbjct: 117 ITPHLRNQPIYIQYSNHKELKTDSALNQRAQAVLQAVTAVQTSNSSVTSTAANENTVSSA 176
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 293
Query: 217 FPQMANAAAIAAAFGG-GLP-------------PGITG--TNDRCTVLVSNLNSDRIDED 260
F + + A+ A G+P G+ G T +LVSNLN + +
Sbjct: 294 FAKETSLLAVPGALSPLGIPNAAAAAAAAAASRVGMHGVSTGGNTVLLVSNLNEEMVSPQ 353
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA+ L G ++GK + V SKH
Sbjct: 354 SLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKMYGKIIRVTLSKHQ 413
Query: 321 NIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +PQ++TE+++ +
Sbjct: 414 TVQLPREGLDDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPQNITEDDLRT 473
Query: 374 HLEEHGSIVNTKLFE-MNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
G N K F+ K AL+ T E+A +AL+ H ++G + +R+SFS+
Sbjct: 474 LFTNTGG--NVKAFKFFQDHKMALLQMSTVEEAIQALIDLHNYNIGDNHHLRVSFSK 528
>gi|221126625|ref|XP_002156158.1| PREDICTED: polypyrimidine tract-binding protein 3-like [Hydra
magnipapillata]
Length = 494
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 172/464 (37%), Positives = 259/464 (55%), Gaps = 42/464 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKVIH+R + + +E ++ L PFG +T ++++R+K+QA L++QDV A + +YT
Sbjct: 30 PSKVIHIRQIPMDATEPEIKSLGLPFGEVTNMLLMRSKSQAFLELQDVDCAKTMINYYTY 89
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQN----AQGRGDEPNR-----ILLVTIHHMLYPITV 114
V PTIR + V++QFS HQEL T QN + GD +R +L V + +++YP+T+
Sbjct: 90 VSPTIRNQPVFLQFSQHQELRTNNQNNHRDSDRNGDSDSRPHGGCVLKVIVTNIIYPVTI 149
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VL QVF G ++K+VTF ++ F ALIQY A A+ +NIY+GC L ++F
Sbjct: 150 DVLQQVFQRCGEIQKVVTFIRNDQFHALIQYSNSKEASAAKVLFDKQNIYNGCNTLHVEF 209
Query: 175 SNLDELQVNYNNERSRDFTNP------NLPAEQKGRPSQ--SGYSEAGVAFPQMANAAAI 226
S + EL V +NNE+ RDFT P NL + + +Q G +FP
Sbjct: 210 SKMSELVVKFNNEKMRDFTKPDKSNYDNLNVQLQAMQAQMNPGMLPVPSSFPPQLFTQGF 269
Query: 227 AAAFGGGLP-------------PGITGTNDRCTV-LVSNLNSDRIDEDKLFNLFSLYGNI 272
FGGG P I G N + +V LVSNLN + I D LF LF YG++
Sbjct: 270 --NFGGGFPNMMGSLSPNNNFNQNIGGGNRQVSVLLVSNLNENEISCDDLFILFGHYGDV 327
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI------TQGA 326
+R+K+L NK D AL+Q D QA A+ L LFG + V+ SKH + +G
Sbjct: 328 LRVKILFNKKDTALIQFADAQQASTALQNLNNVTLFGNEMRVSRSKHDYVHMPKSDDEGK 387
Query: 327 D-THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
+ T +Y NS L+RF + +KN++ +P + +HLS +P+ VTE+E+ E+G+I N +
Sbjct: 388 ELTKDYSNSPLHRFKKPGSKNFQNIFAPIQSLHLSNIPESVTEDELQEMFAEYGTINNFR 447
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F + +K AL+ T E+A L+ H L S +R+SF++
Sbjct: 448 FFPKD-RKMALIQMSTVEEALICLIKLHNRKLNESSHLRVSFAK 490
>gi|118094291|ref|XP_422322.2| PREDICTED: polypyrimidine tract-binding protein 2 [Gallus gallus]
Length = 531
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQATNAPISGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSASGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA+ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMSTVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 291 DGFQAELAVHFLKGA--LLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
DG ++AV +G+ LL G L S ++ A+ ++ N+ +
Sbjct: 2 DGIVTDVAVGVKRGSDELLSGSVLNSPNSNMSSMVVTANGND---------NKKFKSEDK 52
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
SP++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 53 MDGSPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|187608032|ref|NP_001120518.1| polypyrimidine tract binding protein 3 [Xenopus (Silurana)
tropicalis]
gi|170287806|gb|AAI61422.1| LOC100145652 protein [Xenopus (Silurana) tropicalis]
Length = 519
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 171/493 (34%), Positives = 261/493 (52%), Gaps = 68/493 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + ++++E++++ L PFG +T L+ML+ K+QA L+M +A++ + +YT
Sbjct: 25 SPSRVLHIRKIPNDVTESEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVSMVNYYT 84
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------------MEQNAQGRG--- 94
V P +R + VY+Q+S+H+EL T + G G
Sbjct: 85 PVPPHVRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVNTLQSGGLTLTSVPGGEGLVL 144
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+ +L + + ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 145 SGQSPVLRIIVENLFYPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYADPMNAHHA 204
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I+FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 205 KVALDGQNIYNACCTLRIEFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLDTTMAAA 263
Query: 210 YSEAGVAFPQMANAAAIAAAFG--------GGLP------------------PGITGTND 243
+ G+ A AA A A G G+P PG+T
Sbjct: 264 FGAPGIISSPYAGAAGFAPAIGFPQAGLSVPGVPGLGPLALTTSAITGRMAIPGMTAIPG 323
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
+LVSNLN D I LF LF +YG++ R+K+L NK ++ALVQM D QA+ A+ L
Sbjct: 324 HSVLLVSNLNPDAILPHGLFILFGVYGDVQRVKILFNKKENALVQMTDATQAQFAMSHLN 383
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPTKM 356
G L G+ L + SKH ++ + HE Y NS L+RF + +KN++ P+
Sbjct: 384 GQRLHGRVLRITLSKHQSVQLPREGHEDQGLTKDYTNSPLHRFKKPGSKNFQNIFPPSAT 443
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
+HLS +P VT+E++ G V F +K AL+ + E+A AL+ H
Sbjct: 444 LHLSNIPPLVTDEDLKRLFASTGCSVKGFKFFQKDRKMALIQLGSVEEAILALIELHNHD 503
Query: 417 LG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 504 LGENHHLRVSFSK 516
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++H+ +P DVTE EI+S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDRSPCSPSRVLHIRKIPNDVTESEIISLGLPFGKVTN--LLMLKGKSQAF 67
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 68 LEMASEEAA 76
>gi|340375863|ref|XP_003386453.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Amphimedon
queenslandica]
Length = 476
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 163/457 (35%), Positives = 252/457 (55%), Gaps = 36/457 (7%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+RN+ + +E D+ L +G ++K+++LR KNQA +++ ++ +A + ++
Sbjct: 20 SRVLHIRNLPSDATEADVFMLMSTYGAVSKVLLLRQKNQAFVELAELSTACALVDAFSTR 79
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----------------EPNRILLVTIHHM 108
I+ R VY+QFS HQEL + G +PN IL V I +M
Sbjct: 80 PAQIKDRTVYIQFSKHQELKSGSTPIANPGGVPTFTSTVGVVGTSQGQPNSILRVIIENM 139
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC 168
+YPIT++VLHQ+F+ +G V K+VTF K+ F ALIQY A A+++L G+NIY+GCC
Sbjct: 140 IYPITIDVLHQIFAKYGDVLKVVTFMKNTQFHALIQYPNEIIATNAKTALDGQNIYNGCC 199
Query: 169 QLDIQFSNLDELQVNYNNERSRDFTNPNLPA---EQKGRPSQSGYS-----EAGVAFPQM 220
L I +S L L V +NNE++RDFT P+LP+ E P S Y AF Q+
Sbjct: 200 TLHIDYSKLSNLTVKFNNEKTRDFTRPDLPSGDPEAAPLPDLSAYGLHPAFLQSPAFAQL 259
Query: 221 ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN 280
A G G+ VL SNLN I LF LF +YG+++R+K+L +
Sbjct: 260 RTALTALGGTQGAAGAGVVAPTP--VVLASNLNDKMISPHALFILFGVYGDVMRVKILYS 317
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH-------PNITQGADTHEYMN 333
K D ALVQ + QA+ AV L G +L+GK+L + SKH P + A T ++ N
Sbjct: 318 KRDSALVQFREAQQAQNAVTHLNGCMLYGKKLHLTLSKHTQVQMPQPGSNEDALTEDFTN 377
Query: 334 SNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH-GSIVNTKLFEMNGK 392
S L+RF + +KNY+ P+ +HLS +P +TEE + G++VN + F+ N +
Sbjct: 378 SPLHRFKKPGSKNYQNIYPPSPTLHLSNIPDGITEEYLRGLFTSTGGTVVNFRFFQ-NDQ 436
Query: 393 KQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ ALV + ++A AL+ H + + +R++FS+
Sbjct: 437 RMALVQMSSPDEAISALIVTHNHKISETNHLRVTFSK 473
>gi|395514526|ref|XP_003761466.1| PREDICTED: polypyrimidine tract-binding protein 3 [Sarcophilus
harrisii]
Length = 505
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 167/471 (35%), Positives = 261/471 (55%), Gaps = 50/471 (10%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + ++++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 36 PSRVLHLRKIPNDVTETEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 95
Query: 64 VQPTIRGRNVYVQFSSHQELTTME------------------------QNAQGR------ 93
V P +R + VY+Q+S+H+EL T AQG
Sbjct: 96 VTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVNAVQSGSLALPAAQGNEGGVLP 155
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+++EVL+Q+FS G V +I+TF K+ FQAL+QY +A
Sbjct: 156 GQSP--VLRIIVENLFYPVSLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNAHY 213
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP+ G+PS A
Sbjct: 214 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPSIDPTMAA 272
Query: 214 --GVAFPQMANAAA-----IAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLF 266
G++ P + A +A G PG+ G +LVSNLN D I LF LF
Sbjct: 273 AFGLSVPAVPGALGPLTITTSAVTGRMAIPGVPGVPGNSVLLVSNLNPDAITPHGLFILF 332
Query: 267 SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---- 322
+YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH ++
Sbjct: 333 GVYGDVQRVKIMFNKKENALVQMADANQAQLAINHLSGQRLYGKVLRATLSKHQSVQLPR 392
Query: 323 ----TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH 378
QG T ++ NS L+RF + +KN++ P+ +HLS +P V +++ + +
Sbjct: 393 EGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIYPPSATLHLSNIPPSVMVDDLKNLFTDA 451
Query: 379 GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
G V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 452 GCTVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 502
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 28 KGDRSPCSPSRVLHLRKIPNDVTETEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 85
Query: 405 A 405
A
Sbjct: 86 A 86
>gi|327270713|ref|XP_003220133.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Anolis
carolinensis]
Length = 531
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTTNTPISGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A G+P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLGIPNAAAAAAAAAAGRVGMPGVS-SGGNTVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA+ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V+E++
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDD 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRMLFANTGGTVKAFKFFQ--DHKMALLQMSTVEEAIQALIDLHNYNLGENHHLRVSFSK 528
>gi|426229473|ref|XP_004008815.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Ovis
aries]
Length = 550
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 175/497 (35%), Positives = 265/497 (53%), Gaps = 78/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAA-----AIAAAFGGGLP--------------------------PGITG 240
A A P A A AI A G +P PG+ G
Sbjct: 294 AAAFASP-YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 352
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 353 AGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMS 411
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L GK + + SKH ++ QG T +Y NS L+RF + +KN++
Sbjct: 412 HLNGHKLHGKPVRITLSKHQSVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFP 470
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P ++E+++ +G IV F +K AL+ + E+A +AL+
Sbjct: 471 PSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDL 530
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 531 HNHDLGENHHLRVSFSK 547
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
DG ++AV +G+ + + P I G ++ +F ++ R
Sbjct: 2 DGIVPDIAVGTKRGS---DELFSACVTNGPFIMSGTSASTANGNDSKKFKGDS----RSA 54
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 55 GVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMV 111
Query: 411 CKHAS---SLGGSIIRISFSQLQSIRENS 436
+ S L G I I FS + ++ +S
Sbjct: 112 NYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|10863997|ref|NP_067013.1| polypyrimidine tract-binding protein 2 [Homo sapiens]
gi|332221969|ref|XP_003260137.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Nomascus leucogenys]
gi|332809589|ref|XP_001157727.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pan
troglodytes]
gi|345801645|ref|XP_547270.3| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Canis
lupus familiaris]
gi|397474047|ref|XP_003808502.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pan
paniscus]
gi|426330454|ref|XP_004026226.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Gorilla gorilla gorilla]
gi|74761983|sp|Q9UKA9.1|PTBP2_HUMAN RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Neural polypyrimidine tract-binding protein;
AltName: Full=Neurally-enriched homolog of PTB; AltName:
Full=PTB-like protein
gi|6492336|gb|AAF14284.1|AF176085_1 neural polypyrimidine tract binding protein [Homo sapiens]
gi|22711855|tpg|DAA00060.1| TPA_exp: splicing regulator nPTB1 [Homo sapiens]
gi|119593411|gb|EAW73005.1| polypyrimidine tract binding protein 2, isoform CRA_a [Homo
sapiens]
gi|380815182|gb|AFE79465.1| polypyrimidine tract-binding protein 2 [Macaca mulatta]
gi|384948520|gb|AFI37865.1| polypyrimidine tract-binding protein 2 [Macaca mulatta]
gi|410298260|gb|JAA27730.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
Length = 531
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 169/478 (35%), Positives = 268/478 (56%), Gaps = 59/478 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 293
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 294 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 352
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 353 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 412
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 413 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 472
Query: 373 SHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 473 TLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|297279324|ref|XP_001105316.2| PREDICTED: polypyrimidine tract-binding protein 2-like isoform 6
[Macaca mulatta]
gi|22218306|gb|AAM94625.1| non-neuronal splice variant nPTB4 [Homo sapiens]
gi|119593412|gb|EAW73006.1| polypyrimidine tract binding protein 2, isoform CRA_b [Homo
sapiens]
Length = 536
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 265/481 (55%), Gaps = 60/481 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 295
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 296 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 354
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 355 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 414
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 415 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 474
Query: 370 EIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFS 427
++ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS
Sbjct: 475 DLRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFS 532
Query: 428 Q 428
+
Sbjct: 533 K 533
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|255003709|ref|NP_659153.2| polypyrimidine tract-binding protein 3 isoform 1 [Mus musculus]
Length = 551
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 264/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 55 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 114
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 115 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 174
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 175 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 235 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 293
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + A+ A G G + PG +G
Sbjct: 294 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 353
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 354 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 413
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 414 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 472
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 473 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 532
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 533 NHDLGENHHLRVSFSK 548
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 332 MNSNLNRFNRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
MNS+ + N N K + R CSP++++HL +P DVTE E++S G + N L
Sbjct: 32 MNSSTSAANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLM 89
Query: 389 MNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 90 LKGKSQAFLEMASEEAA 106
>gi|53850638|ref|NP_001005555.1| polypyrimidine tract-binding protein 2 [Rattus norvegicus]
gi|81910658|sp|Q66H20.1|PTBP2_RAT RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Neural polypyrimidine tract-binding protein;
AltName: Full=PTB-like protein
gi|93140675|sp|Q91Z31.2|PTBP2_MOUSE RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Brain-enriched polypyrimidine tract-binding
protein; Short=Brain-enriched PTB; AltName: Full=Neural
polypyrimidine tract-binding protein; AltName:
Full=RRM-type RNA-binding protein brPTB
gi|51859313|gb|AAH82076.1| Polypyrimidine tract binding protein 2 [Rattus norvegicus]
gi|149025819|gb|EDL82062.1| polypyrimidine tract binding protein 2, isoform CRA_b [Rattus
norvegicus]
Length = 531
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
>gi|326925087|ref|XP_003208753.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Meleagris
gallopavo]
Length = 531
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 266/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQATNAPISGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA+ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMSTVEEAIQALIDLHNYNLGENHHLRVSFSK 528
>gi|266862|sp|Q00438.1|PTBP1_RAT RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I; AltName: Full=Pyrimidine-binding protein;
Short=PYBP
Length = 555
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 172/502 (34%), Positives = 266/502 (52%), Gaps = 82/502 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAF----------GGGLP-------------------------- 235
A P + +A+ A A G +P
Sbjct: 293 AAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAI 352
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALV+M DG QA
Sbjct: 353 PGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQA 411
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNY 347
+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +KN+
Sbjct: 412 QLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNF 470
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
+ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+A +
Sbjct: 471 QNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQ 530
Query: 408 ALVCKHASSLG-GSIIRISFSQ 428
AL+ H LG +R+SFS+
Sbjct: 531 ALIELHNHDLGENHHLRVSFSK 552
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|395821711|ref|XP_003784180.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2
[Otolemur garnettii]
Length = 531
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTASTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|148680404|gb|EDL12351.1| polypyrimidine tract binding protein 2, isoform CRA_a [Mus
musculus]
Length = 528
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 113
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 114 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 173
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 174 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 231
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 232 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 289
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 290 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 347
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 348 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 407
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 408 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 467
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 468 LRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 525
>gi|334326796|ref|XP_001375584.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Monodelphis
domestica]
Length = 557
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 263/504 (52%), Gaps = 85/504 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA L+M ++ + +YT
Sbjct: 57 PSRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEASNTMVSYYTT 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQ-------------NAQGRGDEP------------- 97
V P +R + +Y+QFS+H+EL T N+ G+
Sbjct: 117 VTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAADAGMA 176
Query: 98 ----NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 VAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYSDPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS A
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAA 295
Query: 214 GVAFPQMANAAAIAAAFGGGLPP------------------------------------- 236
P + +A+ A G G PP
Sbjct: 296 AFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRI 352
Query: 237 ---GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G+TG + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 353 AIPGLTGAGN-SVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGN 411
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAK 345
QA+LA+ L G L GK + + SKH + QG T +Y NS L+RF + +K
Sbjct: 412 QAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSK 470
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N++ P+ +HLS +P ++EE++ +G +V F +K AL+ + E+A
Sbjct: 471 NFQNIFPPSATLHLSNIPPSISEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEA 530
Query: 406 TEALVCKHASSLG-GSIIRISFSQ 428
++L+ H LG +R+SFS+
Sbjct: 531 IQSLIDLHNHDLGENHHLRVSFSK 554
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSPGVPSRVIHVRKLPGDVTEAEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIREN 435
+ TEE A+ +V + + L I I FS + ++ +
Sbjct: 98 FLEMNTEE-ASNTMVSYYTTVTPVLRSQPIYIQFSNHKELKTD 139
>gi|148670263|gb|EDL02210.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_c [Mus
musculus]
Length = 556
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 264/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 60 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 119
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 120 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 179
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 180 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 239
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 240 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 298
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + A+ A G G + PG +G
Sbjct: 299 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 358
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 359 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 418
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 419 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 477
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 478 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 537
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 538 NHDLGENHHLRVSFSK 553
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 279 RNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNR 338
R P +AL+ +G G++ + L ++ G + Y N N N+
Sbjct: 2 RQSPHNALLHLGHGWRG--SDELLSSGVINGPS---------TMNSSTSAGVYANGNDNK 50
Query: 339 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVL 398
K R CSP++++HL +P DVTE E++S G + N L + GK QA +
Sbjct: 51 ----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLE 104
Query: 399 FETEEQA 405
+EE A
Sbjct: 105 MASEEAA 111
>gi|30039680|ref|NP_835458.1| polypyrimidine tract-binding protein 3 isoform 2 [Mus musculus]
gi|50401558|sp|Q8BHD7.1|PTBP3_MOUSE RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|26329429|dbj|BAC28453.1| unnamed protein product [Mus musculus]
gi|26353590|dbj|BAC40425.1| unnamed protein product [Mus musculus]
gi|34785867|gb|AAH57641.1| ROD1 regulator of differentiation 1 (S. pombe) [Mus musculus]
Length = 523
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 264/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 265
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + A+ A G G + PG +G
Sbjct: 266 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 325
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 326 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 385
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>gi|13879326|gb|AAH06638.1| ROD1 regulator of differentiation 1 (S. pombe) [Mus musculus]
Length = 520
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 264/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 24 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 83
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 84 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 143
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 144 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 203
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 204 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 262
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + A+ A G G + PG +G
Sbjct: 263 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 322
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 323 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 382
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 383 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 441
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 442 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 501
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 502 NHDLGENHHLRVSFSK 517
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 332 MNSNLNRFNRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
MNS+ + N N K + R CSP++++HL +P DVTE E++S G + N L
Sbjct: 1 MNSSTSAANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLM 58
Query: 389 MNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 59 LKGKSQAFLEMASEEAA 75
>gi|148670262|gb|EDL02209.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Mus
musculus]
Length = 590
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 175/497 (35%), Positives = 265/497 (53%), Gaps = 74/497 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 94 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 153
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 154 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 213
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 214 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 273
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 274 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 332
Query: 207 -------------QSGYSEAGVAFPQMA--NAAAIAAAFG----------GGLP-PGITG 240
+G++ A +AFPQ A + A+ A G G + PG +G
Sbjct: 333 FGAPGIMSSPYAGAAGFAPA-IAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASG 391
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 392 MPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMN 451
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 452 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFP 510
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 511 PSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 570
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 571 HNHDLGENHHLRVSFSK 587
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 332 MNSNLNRFNRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
MNS+ + N N K + R CSP++++HL +P DVTE E++S G + N L
Sbjct: 71 MNSSTSAANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLM 128
Query: 389 MNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 129 LKGKSQAFLEMASEEAA 145
>gi|149037108|gb|EDL91639.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b
[Rattus norvegicus]
gi|149037109|gb|EDL91640.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b
[Rattus norvegicus]
Length = 514
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 175/496 (35%), Positives = 265/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 18 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 77
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 78 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLL 137
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 138 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 197
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 198 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 256
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + +A+ A G G + PG +G
Sbjct: 257 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGI 316
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A++
Sbjct: 317 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNH 376
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 377 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 435
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 436 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 495
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 496 NHDLGENHHLRVSFSK 511
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 11 KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 68
Query: 405 A 405
A
Sbjct: 69 A 69
>gi|16307418|gb|AAH10255.1| Polypyrimidine tract binding protein 2 [Mus musculus]
Length = 531
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKEKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
>gi|13786186|ref|NP_112636.1| polypyrimidine tract-binding protein 3 [Rattus norvegicus]
gi|50401225|sp|Q9Z118.1|PTBP3_RAT RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|4514552|dbj|BAA75465.1| Rod1 [Rattus norvegicus]
Length = 523
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 175/496 (35%), Positives = 265/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 265
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + +A+ A G G + PG +G
Sbjct: 266 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGI 325
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A++
Sbjct: 326 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNH 385
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>gi|440893263|gb|ELR46101.1| Polypyrimidine tract-binding protein 1, partial [Bos grunniens
mutus]
Length = 548
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/506 (33%), Positives = 263/506 (51%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 48 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 107
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 108 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 167
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 168 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 225
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 226 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 284
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 285 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 341
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN + + LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 342 RIAIPGLAGAGN-SVLLVSNLNPEVLTPQSLFILFGVYGDVQRVKVLFNKKENALVQMAD 400
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH ++ QG T +Y NS L+RF +
Sbjct: 401 GSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 459
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P ++E+++ +G IV F +K AL+ + E
Sbjct: 460 SKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVE 519
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 520 EAIQALIDLHNHDLGENHHLRVSFSK 545
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 31 NGNDSKKFKGDSRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 88
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 FIEMHTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 131
>gi|395513379|ref|XP_003760903.1| PREDICTED: polypyrimidine tract-binding protein 1 [Sarcophilus
harrisii]
Length = 557
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 263/504 (52%), Gaps = 85/504 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA L+M ++ + +YT
Sbjct: 57 PSRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEASNTMVSYYTT 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQ-------------NAQGRGDEP------------- 97
V P +R + +Y+QFS+H+EL T N+ G+
Sbjct: 117 VTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAADAGMA 176
Query: 98 ----NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 VAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYSDPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS A
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAA 295
Query: 214 GVAFPQMANAAAIAAAFGGGLPP------------------------------------- 236
P + +A+ A G G PP
Sbjct: 296 AFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRI 352
Query: 237 ---GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G+TG + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 353 AIPGLTGAGN-SVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGN 411
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAK 345
QA+LA+ L G L GK + + SKH + QG T +Y NS L+RF + +K
Sbjct: 412 QAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSK 470
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N++ P+ +HLS +P ++E+++ +G +V F +K AL+ + E+A
Sbjct: 471 NFQNIFPPSATLHLSNIPPSISEDDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEA 530
Query: 406 TEALVCKHASSLG-GSIIRISFSQ 428
++L+ H LG +R+SFS+
Sbjct: 531 IQSLIDLHNHDLGENHHLRVSFSK 554
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSTGVPSRVIHVRKLPGDVTEAEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIREN 435
+ TEE A+ +V + + L I I FS + ++ +
Sbjct: 98 FLEMNTEE-ASNTMVSYYTTVTPVLRSQPIYIQFSNHKELKTD 139
>gi|417411514|gb|JAA52191.1| Putative polypyrimidine tract-binding protein, partial [Desmodus
rotundus]
Length = 541
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/499 (34%), Positives = 259/499 (51%), Gaps = 76/499 (15%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+R + + +E +++ L PFG +T L+ML+ K+QA L+M +AI + +Y
Sbjct: 44 SSPSRVLHLRKIPSDATEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAITMVNYY 103
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQ 91
T V P +R + +++Q+S+H+EL T +
Sbjct: 104 TPVTPHLRSQPIFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLALPGALTNEGTV 163
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 164 LPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNA 221
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----- 206
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G PS
Sbjct: 222 QYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GHPSLEPPM 280
Query: 207 QSGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGI 238
+ + G+ A AA A A G G L PG
Sbjct: 281 AAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTLASSAVTGRMAIPGA 340
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
+G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA
Sbjct: 341 SGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLA 400
Query: 299 VHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYC 350
++ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 401 MNHLSGQRLYGKVLRATLSKHQTVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNI 459
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+ +HLS +P VT +++ + E G V F +K AL+ E+ E+A +AL+
Sbjct: 460 FPPSATLHLSNIPPSVTMDDLKNLFTEAGCTVKAFKFFQKDRKMALIQLESVEEAIQALI 519
Query: 411 CKHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 520 ELHNHDLGENHHLRVSFSK 538
>gi|291398459|ref|XP_002715890.1| PREDICTED: polypyrimidine tract binding protein 2 [Oryctolagus
cuniculus]
Length = 536
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 265/481 (55%), Gaps = 60/481 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +++Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIFIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 295
Query: 217 FPQMANAAAIAAAFGGGLP--------------------PGITGTNDRCTVLVSNLNSDR 256
+AA G P PG++ + +LVSNLN +
Sbjct: 296 KETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEM 354
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 355 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 414
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE
Sbjct: 415 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 474
Query: 370 EIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFS 427
++ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS
Sbjct: 475 DLRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFS 532
Query: 428 Q 428
+
Sbjct: 533 K 533
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 TPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|338720439|ref|XP_001490810.2| PREDICTED: regulator of differentiation 1 isoform 1 [Equus
caballus]
Length = 523
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 260/498 (52%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGR----------------------------- 93
V P +R + V++Q+S+H+EL T Q R
Sbjct: 87 PVTPHLRSQPVFIQYSNHRELKTDNLPNQARVQAALQAVSAVQSGSLALPGAPTNEGTVL 146
Query: 94 -GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 147 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAH 204
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 205 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 263
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGIT 239
+ + G+ A AA A A G G L PG +
Sbjct: 264 AAFGAPGIISSPYAGAAGFAPAIGFPQGTGLSVQTVPGALGPLAVTSSAVTGRMAIPGAS 323
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D + LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 324 GIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 383
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 384 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 442
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 443 PPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 502
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 503 LHNHDLGENHHLRVSFSK 520
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
T Y N N + K R CSP++++HL +P DVTE E++S G + N L
Sbjct: 7 TGVYANGN----DHKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LL 60
Query: 388 EMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 61 MLKGKSQAFLEMASEEAA 78
>gi|301781136|ref|XP_002925987.1| PREDICTED: regulator of differentiation 1-like [Ailuropoda
melanoleuca]
Length = 567
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 173/495 (34%), Positives = 259/495 (52%), Gaps = 72/495 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 72 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 131
Query: 64 VQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR----- 99
V P +R + V++Q+S+H+EL T N G PN
Sbjct: 132 VTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLALPGAPPNEGTVLP 191
Query: 100 ----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 192 GQSPVLRIIIENLFYPVTLEVLHQIFSKFGAVLKIITFTKNNQFQALLQYADPVNAHYAK 251
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGY 210
+L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS + +
Sbjct: 252 MALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAF 310
Query: 211 SEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGTN 242
G+ A AA A A G G L PG G
Sbjct: 311 GAPGIISSPYAGAAGFAPAIGFHQATGLSVPAVPGALGPLTITSSAVTGRMAVPGAGGMP 370
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L
Sbjct: 371 GNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHL 430
Query: 303 KGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
G L+GK L SKH + QG T ++ NS L+RF + +KN++ P+
Sbjct: 431 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPPS 489
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 490 ATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 549
Query: 415 SSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 550 HDLGENHHLRVSFSK 564
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 332 MNSNLNRFNRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
MN++ N N K + R CSP++++HL +P DVTE E++S G + N L
Sbjct: 48 MNNSTPTANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLM 105
Query: 389 MNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 106 LKGKSQAFLEMASEEAA 122
>gi|395740824|ref|XP_002820149.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Pongo
abelii]
Length = 555
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 260/498 (52%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 59 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 118
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
+ P +R + VY+Q+S+H+EL T + A
Sbjct: 119 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGAVL 178
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 179 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAH 236
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 237 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 295
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGIT 239
+ + G+ A AA A A G G L PG +
Sbjct: 296 AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGAS 355
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 356 GIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 415
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 416 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 474
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 475 PPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 534
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 535 LHNHDLGENHHLRVSFSK 552
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 39 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 91
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 92 LMLKGKSQAFLEMASEEAA 110
>gi|351710810|gb|EHB13729.1| Regulator of differentiation 1, partial [Heterocephalus glaber]
Length = 539
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 262/497 (52%), Gaps = 74/497 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 43 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 102
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 103 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLALHGAPSNEATVL 162
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 163 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 222
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP+ G+PS
Sbjct: 223 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPSLEPPMAAA 281
Query: 207 -------QSGYSEA-----GVAFPQMANAAAIAAAFGGGLP--------------PGITG 240
S Y+ A + FPQ A ++ A G P PG +G
Sbjct: 282 FGAPGIISSPYTGAAGFAPAIGFPQ-ATGLSVPAVPGALGPLTLTSSAITGRMAIPGASG 340
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 341 VPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADAHQAQLAMN 400
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 401 HLSGQRLYGKVLRATLSKHQTVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFP 459
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 460 PSATLHLSNIPPSVTMDDLKNIFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 519
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 520 HNHDLGENHHLRVSFSK 536
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 36 KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 93
Query: 405 A 405
A
Sbjct: 94 A 94
>gi|387017724|gb|AFJ50980.1| Polypyrimidine tract-binding protein 1-like [Crotalus adamanteus]
Length = 556
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 168/505 (33%), Positives = 261/505 (51%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT
Sbjct: 57 PSRVIHIRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVSYYTT 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
+ P +R + +Y+QFS+H+EL T ++
Sbjct: 117 IAPVLRSQQIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDN-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIISASPYA---GAGFPPAFAIPQAGLSVPNVHGALAPLAIPSAAAAAAAAGR 350
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+TG + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 351 IAIPGLTGAGN-SVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADG 409
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
Q++LA+ L G L GK + + SKH + QG T +Y NS L+RF + +
Sbjct: 410 NQSQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDQGL-TKDYGNSPLHRFKKPGS 468
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P + E+++ +G +V F +K AL+ + E+
Sbjct: 469 KNFQNIFPPSATLHLSNIPPSIIEDDLKLLFSSNGGMVKGFKFFQRDRKMALIQMGSVEE 528
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H LG +R+SFS+
Sbjct: 529 AIQSLIDLHNHDLGENHHLRVSFSK 553
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPSDVTEAEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQA 405
+ TEE A
Sbjct: 98 FIEMNTEEAA 107
>gi|348556107|ref|XP_003463864.1| PREDICTED: regulator of differentiation 1-like [Cavia porcellus]
Length = 688
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 172/495 (34%), Positives = 261/495 (52%), Gaps = 70/495 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 192 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 251
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 252 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAIQSGNLTLHGAPSNEVTIL 311
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 312 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 371
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP+ G+PS +
Sbjct: 372 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPSLEPPMAAA 430
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 431 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLALTSSAITGRMAIPGASGI 490
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 491 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 550
Query: 302 LKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPT 354
L G L+GK L SKH + +G + T ++ NS L+RF + +KN++ P+
Sbjct: 551 LSGQRLYGKVLRATLSKHQTVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 610
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 611 ATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 670
Query: 415 SSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 671 HDLGENHHLRVSFSK 685
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 185 KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 242
Query: 405 A 405
A
Sbjct: 243 A 243
>gi|395740821|ref|XP_002820150.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Pongo
abelii]
Length = 524
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 260/498 (52%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
+ P +R + VY+Q+S+H+EL T + A
Sbjct: 88 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGAVL 147
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 148 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAH 205
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 206 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 264
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGIT 239
+ + G+ A AA A A G G L PG +
Sbjct: 265 AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGAS 324
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 325 GIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 384
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 385 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 443
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 444 PPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 503
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 504 LHNHDLGENHHLRVSFSK 521
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 8 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 60
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 61 LMLKGKSQAFLEMASEEAA 79
>gi|213513392|ref|NP_001133760.1| Polypyrimidine tract-binding protein 1 [Salmo salar]
gi|209155238|gb|ACI33851.1| Polypyrimidine tract-binding protein 1 [Salmo salar]
Length = 574
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 265/515 (51%), Gaps = 90/515 (17%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+VIH+R + +I +++++ + PFG +T L+M++ KNQA L+M V A + +Y
Sbjct: 59 SAPSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKGKNQAFLEMNTVDQAQTMVNYY 118
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT------------------------------------ 85
V P IR + V++Q+S+H+EL T
Sbjct: 119 ATVTPLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGSTMSGMGGGM 178
Query: 86 --------MEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA 137
E A+G + + +L V + ++ YP+T+EVLHQ+FS +G V KI+TF K+
Sbjct: 179 GATMSVGGGEMGARGMATQ-SPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNN 237
Query: 138 GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL 197
FQAL+QY +A + SL G+NIY+GCC L + FS L L V +NN++SRD+T P+L
Sbjct: 238 QFQALVQYADPMTAQHTKMSLDGQNIYNGCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDL 297
Query: 198 PAEQK-----------------GRPSQSGYSEAGVAFPQ---MANAAAIA-----AAFGG 232
++ G P S G FPQ + AA ++ A+FG
Sbjct: 298 STGEQHNPQPGMDQHAMAAAAFGSPGLISASPYGHGFPQAFTLQQAAGLSMPGALASFGM 357
Query: 233 GLPPGITGTNDRCTVL-----------VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK 281
G P G+ T L VSNLN + + + LF LF +YG+++R+K+L NK
Sbjct: 358 G-PGGMAATRLGLQALGGGGGQAGVLLVSNLNPESVTPNCLFILFGVYGDVMRVKILFNK 416
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNS 334
D+ALVQM DG QA+LA+ L G L G+ L V+ SKH + + HE Y S
Sbjct: 417 KDNALVQMADGTQAQLAMSHLNGVRLHGRSLRVSMSKHTTVQLPREGHEDQGLTKDYATS 476
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KNY P+ +HLS +P V EE++ + G+ V F +K
Sbjct: 477 PLHRFKKPGSKNYNNIYPPSGTLHLSNIPPAVGEEDLKALFSSSGASVTAFKFFQKDRKM 536
Query: 395 ALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
AL+ + E+A E+L+ H LG + +R+SFS+
Sbjct: 537 ALIQMSSVEEAVESLIEFHNHDLGDNHHLRVSFSK 571
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R +P+++IHL LP D+ + E++S G + N L M GK QA
Sbjct: 44 NGNDSKKFKGEMRSPSAPSRVIHLRQLPGDIQDSEVISMGMPFGKVTN--LLMMKGKNQA 101
Query: 396 LVLFETEEQA 405
+ T +QA
Sbjct: 102 FLEMNTVDQA 111
>gi|297685129|ref|XP_002820148.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pongo
abelii]
Length = 558
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 260/498 (52%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 62 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 121
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
+ P +R + VY+Q+S+H+EL T + A
Sbjct: 122 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGAVL 181
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 182 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAH 239
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 240 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 298
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGIT 239
+ + G+ A AA A A G G L PG +
Sbjct: 299 AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGAS 358
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 359 GIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 418
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 419 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 477
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 478 PPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 537
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 538 LHNHDLGENHHLRVSFSK 555
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 47 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 104
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 105 LEMASEEAA 113
>gi|344244560|gb|EGW00664.1| Regulator of differentiation 1 [Cricetulus griseus]
Length = 523
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 173/498 (34%), Positives = 260/498 (52%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
V P +R + VY+Q+S+H+EL T + A
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGAPSNEGAVL 146
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 147 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAH 204
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 205 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 263
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGIT 239
+ + G+ A AA A A G G L PG +
Sbjct: 264 AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTLTSSAVTGRMAIPGAS 323
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 324 GIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAM 383
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 384 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 442
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 443 PPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 502
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 503 LHNHDLGENHHLRVSFSK 520
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>gi|410897871|ref|XP_003962422.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Takifugu rubripes]
Length = 575
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 175/503 (34%), Positives = 255/503 (50%), Gaps = 78/503 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR + ++I+E +++ L PFG +T L+ML+ KNQA L++ A + +Y++
Sbjct: 70 PSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKGKNQAFLELNSEECAQTMVNYYSS 129
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD---------------------EPNRI-- 100
V P IR +Y+Q+S+H+EL T Q R +P I
Sbjct: 130 VTPYIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGGMAIPTDPASIAG 189
Query: 101 -------LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
L V + ++ YP+T+EVLHQ+FS G V KI+TF K+ FQALIQ+ +A
Sbjct: 190 AAAQSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQHVDSMTAQH 249
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK----------- 202
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP
Sbjct: 250 AKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSLDPQTMAA 309
Query: 203 -----GRPSQSGYS-------------EAGVAFPQMANAAAIAAAFGGGLP--------- 235
G S S Y AG++ P + A A GG+
Sbjct: 310 AFAAPGIISASPYGGAHAFPPAFAIQQTAGLSMPGIPTALASLGVSHGGMAAAAAAATRL 369
Query: 236 --PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G+T T +LVSNLN + LF LF +YG+++R+K+L NK ++ALVQM DG
Sbjct: 370 GFTGLTPTAGHNVLLVSNLNPQSVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDGT 429
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKN 346
QA+LA+ L G L G+ + V FSKH + + HE Y NS L+RF + +KN
Sbjct: 430 QAQLAMSHLNGQRLHGREMRVTFSKHTTVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKN 489
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y P+ +HLS +P V E+++ G+ V F K AL+ + E+A
Sbjct: 490 YSNIFPPSATLHLSNIPPAVVEDDLKRLFASSGATVKAFKFFQKDHKMALIQMGSVEEAI 549
Query: 407 EALVCKHASSLG-GSIIRISFSQ 428
+ L+ H LG +R+SFS+
Sbjct: 550 DCLIKFHNHDLGENHHLRVSFSK 572
>gi|410897873|ref|XP_003962423.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Takifugu rubripes]
Length = 577
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 175/503 (34%), Positives = 255/503 (50%), Gaps = 78/503 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR + ++I+E +++ L PFG +T L+ML+ KNQA L++ A + +Y++
Sbjct: 72 PSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKGKNQAFLELNSEECAQTMVNYYSS 131
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD---------------------EPNRI-- 100
V P IR +Y+Q+S+H+EL T Q R +P I
Sbjct: 132 VTPYIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGGMAIPTDPASIAG 191
Query: 101 -------LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
L V + ++ YP+T+EVLHQ+FS G V KI+TF K+ FQALIQ+ +A
Sbjct: 192 AAAQSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQHVDSMTAQH 251
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK----------- 202
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP
Sbjct: 252 AKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSLDPQTMAA 311
Query: 203 -----GRPSQSGYS-------------EAGVAFPQMANAAAIAAAFGGGLP--------- 235
G S S Y AG++ P + A A GG+
Sbjct: 312 AFAAPGIISASPYGGAHAFPPAFAIQQTAGLSMPGIPTALASLGVSHGGMAAAAAAATRL 371
Query: 236 --PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G+T T +LVSNLN + LF LF +YG+++R+K+L NK ++ALVQM DG
Sbjct: 372 GFTGLTPTAGHNVLLVSNLNPQSVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDGT 431
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKN 346
QA+LA+ L G L G+ + V FSKH + + HE Y NS L+RF + +KN
Sbjct: 432 QAQLAMSHLNGQRLHGREMRVTFSKHTTVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKN 491
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y P+ +HLS +P V E+++ G+ V F K AL+ + E+A
Sbjct: 492 YSNIFPPSATLHLSNIPPAVVEDDLKRLFASSGATVKAFKFFQKDHKMALIQMGSVEEAI 551
Query: 407 EALVCKHASSLG-GSIIRISFSQ 428
+ L+ H LG +R+SFS+
Sbjct: 552 DCLIKFHNHDLGENHHLRVSFSK 574
>gi|354486792|ref|XP_003505562.1| PREDICTED: regulator of differentiation 1-like [Cricetulus griseus]
Length = 643
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 173/498 (34%), Positives = 260/498 (52%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 147 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 206
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
V P +R + VY+Q+S+H+EL T + A
Sbjct: 207 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGAPSNEGAVL 266
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 267 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAH 324
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 325 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 383
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGIT 239
+ + G+ A AA A A G G L PG +
Sbjct: 384 AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTLTSSAVTGRMAIPGAS 443
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 444 GIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAM 503
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 504 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 562
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 563 PPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 622
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 623 LHNHDLGENHHLRVSFSK 640
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 130 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 183
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 184 GKSQAFLEMASEEAA 198
>gi|326934420|ref|XP_003213288.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Meleagris
gallopavo]
Length = 526
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 170/505 (33%), Positives = 258/505 (51%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +R + +Y+QFS+H+EL T ++
Sbjct: 87 VTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALPAPAAAVDAGMA 146
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSA 204
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +P
Sbjct: 205 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDN-QPPLDQTM 263
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + A+ A G G PP
Sbjct: 264 AAAFGAPGIIPASPYA---GAGFPPTFAIPQAAGLTVQNVHGALAPLAIPAAAAAAAAGR 320
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 321 IAIPGLAGAGN-SVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADG 379
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH + QG T +Y NS L+RF + +
Sbjct: 380 NQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDQGL-TKDYGNSPLHRFKKPGS 438
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P + EE++ +G +V F +K AL+ + E+
Sbjct: 439 KNFQNIFPPSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEE 498
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H LG +R+SFS+
Sbjct: 499 AIQSLIDLHNHDLGENHHLRVSFSK 523
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDSRSAGVPSRVIHVRKLPSDVTEAEVISLGLPFGKVTN--LLMLKGKNQA 67
Query: 396 LVLFETEEQA 405
+ TEE A
Sbjct: 68 FIEMNTEEAA 77
>gi|116175255|ref|NP_001070683.1| regulator of differentiation 1 [Sus scrofa]
gi|115371761|gb|ABI96205.1| ROD1 [Sus scrofa]
Length = 523
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 263/498 (52%), Gaps = 74/498 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 25 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 84
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
V P +R + V++Q+S+H+EL T ++ + G P
Sbjct: 85 PVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLGLPGAPTNEGTIL 144
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 145 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYA 204
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 205 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 263
Query: 210 YSEAGVAFPQMANAAAIAAAFG----------GGLPPGITG----TNDRCT--------- 246
+ G+ A AA A A G GL PG G T+ T
Sbjct: 264 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTG 323
Query: 247 -------VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
+LV+NLN D + LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 324 GIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 383
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 384 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 442
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 443 PPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 502
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 503 LHNHDLGENHHLRVSFSK 520
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 18 KGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 75
Query: 405 A 405
A
Sbjct: 76 A 76
>gi|432091564|gb|ELK24589.1| Regulator of differentiation 1 [Myotis davidii]
Length = 524
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 171/498 (34%), Positives = 258/498 (51%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +AI + +YT
Sbjct: 28 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAITMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
V P +R + +++Q+S+H+EL T +
Sbjct: 88 PVTPHLRSQPIFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPTNEGTML 147
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 148 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAQ 205
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----Q 207
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G PS
Sbjct: 206 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GHPSLESPMA 264
Query: 208 SGYSEAGVAFPQMANAAAIAAAFG---------GGLP-------------------PGIT 239
+ + G+ A AA A A G G+P PG
Sbjct: 265 AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPGVPGALGPLALTSSAVTGRMAIPGAG 324
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 325 GIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 384
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 385 NHLNGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 443
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 444 PPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 503
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 504 LHNHDLGENHHLRVSFSK 521
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 11 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLMLK 64
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 65 GKSQAFLEMASEEAA 79
>gi|255003744|ref|NP_001157262.1| polypyrimidine tract-binding protein 3 isoform 3 [Homo sapiens]
gi|114626182|ref|XP_528390.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 6 [Pan
troglodytes]
gi|397479185|ref|XP_003810908.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Pan
paniscus]
gi|51476645|emb|CAH18301.1| hypothetical protein [Homo sapiens]
Length = 555
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 59 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 118
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 119 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 178
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 179 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 238
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 239 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 297
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 298 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 357
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 358 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 417
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 418 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 476
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 477 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 536
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 537 NHDLGENHHLRVSFSK 552
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 39 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 91
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 92 LMLKGKSQAFLEMASEEAA 110
>gi|402896663|ref|XP_003911410.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Papio
anubis]
Length = 555
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 59 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 118
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 119 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 178
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 179 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 238
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 239 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 297
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 298 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 357
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 358 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 417
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 418 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 476
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 477 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 536
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 537 NHDLGENHHLRVSFSK 552
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 331 YMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM 389
Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L +
Sbjct: 42 YANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLML 94
Query: 390 NGKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 95 KGKSQAFLEMASEEAA 110
>gi|38569466|ref|NP_005147.3| polypyrimidine tract-binding protein 3 isoform 1 [Homo sapiens]
gi|218511814|sp|O95758.2|PTBP3_HUMAN RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|119579504|gb|EAW59100.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Homo
sapiens]
gi|119579505|gb|EAW59101.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Homo
sapiens]
Length = 552
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 56 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 294
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 295 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 354
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 355 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 473
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 474 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 533
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 534 NHDLGENHHLRVSFSK 549
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 41 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 98
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 99 LEMASEEAA 107
>gi|223647470|gb|ACN10493.1| Polypyrimidine tract-binding protein 1 [Salmo salar]
Length = 574
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 173/515 (33%), Positives = 265/515 (51%), Gaps = 90/515 (17%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+VIH+R + +I +++++ + PFG +T L+M++ KNQA L+M V A + +Y
Sbjct: 59 SAPSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKGKNQAFLEMNTVDQAQTMVNYY 118
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT------------------------------------ 85
V P IR + V++Q+S+H+EL T
Sbjct: 119 ATVTPLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGSTMSGMGGGM 178
Query: 86 --------MEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA 137
E A+G + + +L V + ++ YP+T+EVLHQ+FS +G V KI+TF K+
Sbjct: 179 GASMSVGGGEMGARGMATQ-SPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNN 237
Query: 138 GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL 197
FQAL+QY +A + SL G+NIY+GCC L + FS L L V +NN++SRD+T P+L
Sbjct: 238 QFQALVQYADPMTAQHTKMSLDGQNIYNGCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDL 297
Query: 198 PAEQK-----------------GRPSQSGYSEAGVAFPQ---MANAAAIA-----AAFGG 232
++ G P S G FPQ + AA ++ A+FG
Sbjct: 298 STGEQHNPQPGMDQHAMAAAAFGSPGLISASPYGHGFPQAFTLQQAAGLSMPGALASFGM 357
Query: 233 GLPPGITGTNDRCTVL-----------VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK 281
G P G+ + L VSNLN + + + LF LF +YG+++R+K+L NK
Sbjct: 358 G-PGGMAASRLGLQALGGGGGQAGVLLVSNLNPESVTPNCLFILFGVYGDVMRVKILFNK 416
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNS 334
D+ALVQM DG QA+LA+ L G L G+ L V+ SKH + + HE Y S
Sbjct: 417 KDNALVQMADGTQAQLAMSHLNGVRLHGRSLRVSMSKHTTVQLPREGHEDQGLTKDYATS 476
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KNY P+ +HLS +P V EE++ + G+ V F +K
Sbjct: 477 PLHRFKKPGSKNYNNIYPPSGTLHLSNIPPAVGEEDLKALFSSSGASVTAFKFFQKDRKM 536
Query: 395 ALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
AL+ + E+A E+L+ H LG + +R+SFS+
Sbjct: 537 ALIQMSSVEEAVESLIEFHNHDLGDNHHLRVSFSK 571
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R +P+++IHL LP D+ + E++S G + N L M GK QA
Sbjct: 44 NGNDSKKFKGEMRSPSAPSRVIHLRQLPGDIQDSEVISMGMPFGKVTN--LLMMKGKNQA 101
Query: 396 LVLFETEEQA 405
+ T +QA
Sbjct: 102 FLEMNTVDQA 111
>gi|242023546|ref|XP_002432193.1| Polypyrimidine tract-binding protein, putative [Pediculus humanus
corporis]
gi|212517590|gb|EEB19455.1| Polypyrimidine tract-binding protein, putative [Pediculus humanus
corporis]
Length = 513
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 181/506 (35%), Positives = 258/506 (50%), Gaps = 101/506 (19%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PSKVIH+RN+ ++SE +++ L PFG +T +++L+ KNQ ++ SA + ++T
Sbjct: 26 KPSKVIHIRNIPSDVSEPEIIHLGIPFGRVTNVLVLKGKNQVRYEL----SASEMVSYFT 81
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQ----------------GRGDE---PNRILLV 103
+ +RGR V+VQFS+H+EL T + ++ G D PN +L V
Sbjct: 82 SCAAQLRGRAVFVQFSNHKELKTDQTHSNANASAQAALQAAQALSGSIDTQGGPNTVLRV 141
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
I HM+YP+T++VL++V + ++T Q FQALIQY +A A+ SL GRNI
Sbjct: 142 IIEHMVYPVTLDVLYKVRR-----KILLTRQSFRSFQALIQYPDVITAQAAKLSLDGRNI 196
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK--------------------- 202
Y+ CC L I++S L L V YNN++SRD+TNPNLP
Sbjct: 197 YNSCCTLRIEYSKLSALNVKYNNDKSRDYTNPNLPTGDSGLDGLGLGGADILPQLLMANS 256
Query: 203 ----------------------------GRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL 234
G P SG AG A P ANAA G+
Sbjct: 257 TPSRHRSLPTDMQARLAAGDLTSPLAFAGSPVTSGMPLAGFALPG-ANAAL-------GV 308
Query: 235 P----PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
P PG G C +LVSNLN + + D LF LF +YG++ R+K+L NK D ALVQM
Sbjct: 309 PGIRLPGSGG----CVLLVSNLNQEMVTPDALFTLFGVYGDVQRVKILYNKKDSALVQMA 364
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNA 343
+ QA +A+ L +FGK + V SKH + D T +Y+NS L+RF +
Sbjct: 365 EPLQAHIAMKHLDQIRVFGKNITVVASKHTLVQMPKDGQPDAGLTKDYVNSPLHRFKKPG 424
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KNY+ P+ +HLS +P VTEE+I E G V + F KK AL+ E+ +
Sbjct: 425 SKNYQNIYPPSSTLHLSNIPPTVTEEDIEEAFAEAGFEVKSFKFFPKDKKMALINLESVD 484
Query: 404 QATEALVCKHASSLGGS-IIRISFSQ 428
QA AL+ H L S +R+SFS+
Sbjct: 485 QAVSALIKMHNHQLSESNHLRVSFSK 510
>gi|355567525|gb|EHH23866.1| hypothetical protein EGK_07422, partial [Macaca mulatta]
Length = 558
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 62 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 121
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 122 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 181
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 182 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 241
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 242 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 300
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 301 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 360
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 361 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 420
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 421 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 479
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 480 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 539
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 540 NHDLGENHHLRVSFSK 555
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 47 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 104
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 105 LEMASEEAA 113
>gi|224087659|ref|XP_002196400.1| PREDICTED: polypyrimidine tract-binding protein 1 [Taeniopygia
guttata]
Length = 525
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 171/500 (34%), Positives = 261/500 (52%), Gaps = 79/500 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEETANTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +R + +Y+QFS+H+EL T ++
Sbjct: 87 VTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVTQVQAGAVALAATAAAVDAGMA 146
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNHQFQALLQYADPMSA 204
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----- 206
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +P+
Sbjct: 205 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-SQPTLDQTM 263
Query: 207 QSGYSEAGVAFPQMANAA-----AIAAAFGGGLPP------------------------- 236
+ + G+ P A A AI A G +P
Sbjct: 264 AAAFGAPGIISPPYAGAGFPPTFAIPQATGLTVPSVPGALAPLAIPAAAAAAAAGRIAIP 323
Query: 237 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 296
G++GT +LVSNL +R+ LF LF +YG++ R+K+L NK D+ALVQM DG QA+
Sbjct: 324 GLSGTG-HSVLLVSNLIPERVTPQCLFILFGVYGDVQRVKILFNKKDNALVQMADGNQAQ 382
Query: 297 LAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRY 349
LA+ L G L GK + + SKH + + T +Y S L+RF + +KN++
Sbjct: 383 LAMSHLNGQKLHGKPIRITLSKHQTVQLPRENQEDHGLTKDYGTSPLHRFKKPGSKNFQN 442
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
P+ +HLS +P VTEE++ +G +V F +K AL+ + E+A ++L
Sbjct: 443 IFPPSATLHLSNIPPSVTEEDLKLLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSL 502
Query: 410 VCKHASSLG-GSIIRISFSQ 428
+ H LG +R+SFS+
Sbjct: 503 IDLHNHDLGENHHLRVSFSK 522
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 332 MNSNLNR-FNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
M++N R N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 1 MSANSTRPANGNDSKKFKGDNRSAGIPSRVIHVRKLPSDVTEAEVISLGLPFGKVTN--L 58
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + TEE A
Sbjct: 59 LMLKGKNQAFIEMNTEETA 77
>gi|255003738|ref|NP_001157260.1| polypyrimidine tract-binding protein 3 isoform 2 [Homo sapiens]
gi|397479181|ref|XP_003810906.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pan
paniscus]
gi|410043017|ref|XP_003951545.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
gi|194380114|dbj|BAG63824.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 88 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 326
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 327 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 386
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 387 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 445
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 446 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 505
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 506 NHDLGENHHLRVSFSK 521
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 8 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 60
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 61 LMLKGKSQAFLEMASEEAA 79
>gi|402896661|ref|XP_003911409.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Papio
anubis]
Length = 524
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 88 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 326
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 327 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 386
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 387 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 445
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 446 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 505
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 506 NHDLGENHHLRVSFSK 521
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 331 YMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM 389
Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L +
Sbjct: 11 YANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLML 63
Query: 390 NGKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 KGKSQAFLEMASEEAA 79
>gi|402896665|ref|XP_003911411.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Papio
anubis]
Length = 521
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 25 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 84
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 85 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 144
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 145 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 204
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 205 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 263
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 264 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 323
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 324 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 383
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 384 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 442
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 443 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 502
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 503 NHDLGENHHLRVSFSK 518
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 10 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 67
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 68 LEMASEEAA 76
>gi|410043020|ref|XP_003951546.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
Length = 558
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 62 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 121
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 122 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 181
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 182 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 241
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 242 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 300
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 301 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 360
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 361 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 420
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 421 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 479
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 480 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 539
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 540 NHDLGENHHLRVSFSK 555
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 42 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 94
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 95 LMLKGKSQAFLEMASEEAA 113
>gi|343959136|dbj|BAK63423.1| regulator of differentiation 1 [Pan troglodytes]
Length = 524
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 88 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVSGALGPLTITSSAVTGRMAIPGASGI 326
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 327 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 386
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 387 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 445
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 446 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 505
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 506 NHDLGENHHLRVSFSK 521
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 8 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 60
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 61 LMLKGKSQAFLEMASEEAA 79
>gi|426362706|ref|XP_004048496.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2
[Gorilla gorilla gorilla]
gi|4514554|dbj|BAA75466.1| Rod1 [Homo sapiens]
Length = 521
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 25 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 84
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 85 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 144
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 145 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 204
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 205 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 263
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 264 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 323
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 324 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 383
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 384 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 442
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 443 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 502
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 503 NHDLGENHHLRVSFSK 518
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 10 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 67
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 68 LEMASEEAA 76
>gi|410904361|ref|XP_003965660.1| PREDICTED: polypyrimidine tract-binding protein 3-like [Takifugu
rubripes]
Length = 481
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/469 (35%), Positives = 253/469 (53%), Gaps = 59/469 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + I+E ++L L PFG ++KL+ L+AKNQ L+M +A+ + +YT+
Sbjct: 25 PSRVLHLRQLPFNITEQEVLALALPFGRVSKLITLKAKNQGFLEMASEEAAVTMMNYYTS 84
Query: 64 VQPTIRGRNVYVQFSSHQELTT----------------------MEQNAQGRG--DEPNR 99
PTIR + V++Q+S+H+EL T M + GRG +
Sbjct: 85 APPTIRNQPVFIQYSNHRELKTDNLTNQRAALQAISTAAMHSGTMAPGSDGRGVVHGQSP 144
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L + + ++ YP+T+EVL Q+FS G V KI+TF ++ FQAL+Q+ A A++SL
Sbjct: 145 VLRIIVENLFYPVTLEVLQQIFSKFGSVLKIITFTRNNQFQALLQFSDAVHAQHAKASLD 204
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ 219
G+NIY+GCC L I FS L L V YNN++SRDFT +LP +G + AF
Sbjct: 205 GQNIYNGCCTLRIDFSKLSALNVKYNNDKSRDFTRSDLP---------TGELDPTAAF-T 254
Query: 220 MANAAAIAAAFGGGL----------PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY 269
++ ++AA G + PP I +LVSNLN + + LF LF +Y
Sbjct: 255 LSPGLSVAAVPGSLMSPPRVSLQMAPPAI-----HSVLLVSNLNPESVSPQCLFILFGVY 309
Query: 270 GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGA 326
G++ R+K+L NK ++ALVQM D QA+LA+ L G L G + V SKHP + GA
Sbjct: 310 GDVQRVKILFNKKENALVQMSDATQAQLAMSHLNGQRLHGNVIRVMLSKHPVVQLPRGGA 369
Query: 327 D------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS 380
T ++ S L+RF + +KN+ P+ +HLS +P V+EE++ G
Sbjct: 370 GQEEQVLTRDFSGSALHRFKKPGSKNFNNIFPPSATLHLSNIPSSVSEEDLKDLFSSRGF 429
Query: 381 IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
V F +K AL+ + E+A EAL+ H L +R+SFS+
Sbjct: 430 TVKAFKFFQKDRKMALMQLASVEEAIEALIVLHDHLLDHNQHLRVSFSK 478
>gi|355753108|gb|EHH57154.1| hypothetical protein EGM_06734, partial [Macaca fascicularis]
Length = 539
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 43 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 102
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 103 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 162
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 163 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 222
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 223 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 281
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 282 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 341
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 342 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 401
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 402 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 460
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 461 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 520
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 521 NHDLGENHHLRVSFSK 536
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 28 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 85
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 86 LEMASEEAA 94
>gi|349732192|ref|NP_001231827.1| polypyrimidine tract-binding protein 3 isoform 6 [Homo sapiens]
gi|114626184|ref|XP_001149612.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 5 [Pan
troglodytes]
gi|397479183|ref|XP_003810907.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Pan
paniscus]
gi|27882560|gb|AAH44585.1| ROD1 protein [Homo sapiens]
gi|119579503|gb|EAW59099.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a [Homo
sapiens]
Length = 558
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 62 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 121
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 122 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 181
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 182 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 241
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 242 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 300
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 301 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 360
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 361 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 420
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 421 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 479
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 480 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 539
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 540 NHDLGENHHLRVSFSK 555
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 47 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 104
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 105 LEMASEEAA 113
>gi|432936644|ref|XP_004082208.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oryzias
latipes]
Length = 577
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/507 (33%), Positives = 254/507 (50%), Gaps = 85/507 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR + ++I+E +++ L PFG +T L+ML+ KNQA L+ A + +Y++
Sbjct: 71 PSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEFGSEECAQTMVSYYSS 130
Query: 64 VQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQGR 93
V P IR +Y+Q+S+H+EL T E + G
Sbjct: 131 VTPVIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGSGMGSMAISAEAASMGG 190
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ +L V + ++ YP+T++VLHQ+FS G V KI+TF K+ FQALIQY +A
Sbjct: 191 AASQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQH 250
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP +PS + A
Sbjct: 251 AKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADS-QPSLDHQAMA 309
Query: 214 GVAF-PQMANAAAIAAAFGGGLPP------------------------------------ 236
AF P + +A+ A PP
Sbjct: 310 AAAFGPGIISASPYGGAHA--FPPTFTFQQAGLSMQGIPSALASLGVGHSGMAAAAAAAA 367
Query: 237 -------GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
G+ T +LVSNLN + + LF LF +YG+++R+K+L NK ++ALVQM
Sbjct: 368 ATRLGLSGLGATGGHNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKKENALVQM 427
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRN 342
DG QA+L++ L G L G+ + V SKH + + HE Y NS L+RF +
Sbjct: 428 SDGTQAQLSMSHLNGQRLHGRAIRVTLSKHTTVQLPREGHEDQGLTKDYSNSPLHRFKKP 487
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+KNY P+ +HLS +P V E+++ G+ V F +K AL+ +
Sbjct: 488 GSKNYSNIFPPSATLHLSNIPPSVMEDDLRRLFASTGATVKAFKFFQKDRKMALIQMGSV 547
Query: 403 EQATEALVCKHASSLG-GSIIRISFSQ 428
E+A E L+ H LG +R+SFS+
Sbjct: 548 EEAIECLIEFHNHDLGENHHLRVSFSK 574
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 336 LNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
+N N N +K + R P++++H+ LP D+ E E++S G + N L + G
Sbjct: 50 MNSANGNDSKKFKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTN--LLMLKG 107
Query: 392 KKQALVLFETEEQATEALVCKHAS 415
K QA + F +EE A + +V ++S
Sbjct: 108 KNQAFLEFGSEECA-QTMVSYYSS 130
>gi|431918462|gb|ELK17686.1| Regulator of differentiation 1 [Pteropus alecto]
Length = 523
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/496 (34%), Positives = 259/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
V P +R + +++Q+S+H+EL T ++ + P
Sbjct: 87 PVTPHLRSQPIFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPTNEGTVL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G PS +
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GHPSLEPPMAAA 265
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 266 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 325
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 326 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 385
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>gi|355717047|gb|AES05805.1| ROD1 regulator of differentiation 1 [Mustela putorius furo]
Length = 497
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 259/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 2 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 61
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
V P +R + V++Q+S+H+EL T ++ + P
Sbjct: 62 PVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPTNEGTIL 121
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 122 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 181
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 182 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 240
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG G
Sbjct: 241 FGAPGIISSPYAGAAGFAPAIGFHQATGLSVPAVPGALGPLTIASSAVTGRMAIPGAGGI 300
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 301 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 360
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 361 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 419
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 420 SATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 479
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 480 NHDLGENHHLRVSFSK 495
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
CSP++++HL +P DVTE E++S G + N L + GK QA + +EE A
Sbjct: 1 CSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEAA 53
>gi|444509522|gb|ELV09317.1| Polypyrimidine tract-binding protein 1, partial [Tupaia chinensis]
Length = 522
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/491 (34%), Positives = 259/491 (52%), Gaps = 82/491 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 45 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNAEEAANTMVNYYTS 104
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD-----------------EPNRILLVTIH 106
V P +RG+ +Y+QFS+H+EL T Q G+ + +L V +
Sbjct: 105 VTPVLRGQPIYIQFSNHKELKTDSSPNQASGNLALAASAAAMDAGMAMAGQSPVLRVIVE 164
Query: 107 HMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166
++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+
Sbjct: 165 NLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA 224
Query: 167 CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAI 226
CC L I FS L L V YNN++SRD+T P+LP+ +PS A P + +A+
Sbjct: 225 CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAAAFGAPGIISASPY 283
Query: 227 AAAFGGGLPP----------------------------------------GITGTNDRCT 246
A G G PP G+ G +
Sbjct: 284 A---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SV 339
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNLN + +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G
Sbjct: 340 LLVSNLNPE----------VGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHK 389
Query: 307 LFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
L GK + + SKH ++ QG T +Y +S L+RF + +KN++ P+ +H
Sbjct: 390 LHGKPIRIALSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLH 448
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
LS +P V+EE++ +G +V F +K AL+ + E+A +AL+ H LG
Sbjct: 449 LSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG 508
Query: 419 GS-IIRISFSQ 428
S +R+SFS+
Sbjct: 509 ESHHLRVSFSK 519
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R +P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 28 NGNDSKKFKGDSRSAGTPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 85
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ EE A +V + S L G I I FS + ++ +S
Sbjct: 86 FIEMNAEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 128
>gi|281210224|gb|EFA84392.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 468
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 231/391 (59%), Gaps = 27/391 (6%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKV+H+RN+ + +E++++ L PFG + +++L+ K+Q +QM D+ SA +QFYT
Sbjct: 47 PSKVVHLRNLPIDCTEHEIMALASPFGQVEHILILKGKSQGFIQMADLTSATAFIQFYTT 106
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
+Q +IR +N +VQ+S+ +E+T+ + PN ILLVTI +++YP+T++VL+Q+FS
Sbjct: 107 IQGSIRSKNFFVQYSNREEITSYSS-----VETPNNILLVTISNIIYPVTIDVLYQLFSK 161
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
+G V KI+ F KS FQ+LIQ SA+ A+ L G+NIY+GCC L IQ+S+L+ L++
Sbjct: 162 YGSVLKILIFSKSGNFQSLIQLHTTDSAINAKRELDGQNIYNGCCTLKIQYSSLNNLRIK 221
Query: 184 YNNERSRDFTNPN-LPAEQK--GRPSQSGYSEAGVAFPQMANAAAIAAAFG--------G 232
YNN++SRDFTNP LP P G S A A Q + A G
Sbjct: 222 YNNDKSRDFTNPTLLPGTTSLLSNPIGFGISPAPTAVIQHQHQHQHQQALAIPQMVPHVG 281
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
P +TG ++V L + + D LF LF +YG+ +R+K++ NK D AL+QM
Sbjct: 282 AFIPQVTG---NTVLIVGGLPTKDVTPDDLFTLFGVYGDPLRVKIMFNKKDTALIQMNLP 338
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNIT--QGADTH-----EYMNSNLNRFNRNAAK 345
QA+LA+ +L G + VN SKH +I+ + DTH +Y S +RF +K
Sbjct: 339 QQADLAIQYLNNVPFRGHTIRVNPSKHNSISLPKSGDTHGELTKDYTGSTTHRFKLPGSK 398
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
NY+ P+ +HLS LPQD EE+ HL+
Sbjct: 399 NYQNIHPPSPTLHLSNLPQDPNIEELY-HLQ 428
>gi|321470924|gb|EFX81898.1| hypothetical protein DAPPUDRAFT_302853 [Daphnia pulex]
Length = 540
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 173/506 (34%), Positives = 270/506 (53%), Gaps = 80/506 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+V+H+RN+ ++++E +++ L PFG +T +++L+ KNQA L+M D +AI+ + +++
Sbjct: 32 KPSRVVHIRNIPNDVTEAEIVHLGIPFGRVTNVLVLKGKNQAFLEMADEGAAISMVNYFS 91
Query: 63 N-VQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------------------ 91
+ +RGRNV+VQ+S+H L T + ++
Sbjct: 92 SGTSAQLRGRNVFVQYSNHVALKTDQSHSNAVRFINLFFEFSVSIDGSFSAAAQAALQAA 151
Query: 92 ----GRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
G+ + PN +L V + HM+YP+T++VL Q+FS G V KIVTF K+ FQALIQ
Sbjct: 152 QALAGQTETQGGPNTVLRVIVEHMVYPVTLDVLFQIFSKVGRVLKIVTFTKNNTFQALIQ 211
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
Y +A A+ +L G+NIY+ CC L I++S L L V YNN++SRD+TNP LP
Sbjct: 212 YPDVVTAQAAKLTLDGQNIYNSCCTLRIEYSKLSSLNVKYNNDKSRDYTNPTLPTGDHNL 271
Query: 205 PSQSGYSEAGV-AFPQMAN---AAAIAAAFGGG----------LPPGIT----------- 239
+ + AGV A P A A+ + AA+G LP G +
Sbjct: 272 DAFAMTGGAGVLASPFQAMHGLASPLTAAYGSASVGGGGGDFILPSGFSLPGGSASAALG 331
Query: 240 -----GTNDRCT----VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
+ +C+ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM
Sbjct: 332 PAALRLSGQQCSSGAVLLVSNLNEEMVTPDALFTLFGVYGDVHRVKILFNKKDTALIQMA 391
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNA 343
+ QA+LA+ L L+GK+L SKH + + T +++NS L+RF +
Sbjct: 392 EPHQAQLAMTHLDKLKLYGKQLRAMPSKHQGVQMPKEGQPDAGLTKDFINSALHRFKKPG 451
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KNY+ P+ +HLS +P +VTEEEI + F +K AL+ + E
Sbjct: 452 SKNYQNIYPPSSTLHLSNIPPNVTEEEIKNAFTAANFAPQAFKFFPKDRKMALIQLGSVE 511
Query: 404 QATEALVCKHASSLGGSI-IRISFSQ 428
+A AL+ H L S +R+SFS+
Sbjct: 512 EAVAALIKMHNYQLSDSSHLRVSFSK 537
>gi|426219707|ref|XP_004004060.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Ovis
aries]
Length = 526
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/498 (34%), Positives = 262/498 (52%), Gaps = 74/498 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
V P +R + V++Q+S+H+EL T ++ + P
Sbjct: 88 PVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPTSEGTIL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG----------GGLPPGITG----TNDRCT--------- 246
+ G+ A AA A A G GL PG G T+ T
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAIPGAG 326
Query: 247 -------VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 327 GMPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 386
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 387 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 445
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 446 PPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 505
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 506 LHNHDLGENHHLRVSFSK 523
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 11 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLMLK 64
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 65 GKSQAFLEMASEEAA 79
>gi|194212378|ref|XP_001915461.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Equus caballus]
Length = 596
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 171/498 (34%), Positives = 265/498 (53%), Gaps = 81/498 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + ++++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 104 PSRVIHIRKLPNDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 163
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 164 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 223
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 224 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSA 281
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----- 206
A+ L +NIY+ C L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 282 QHAKLLLDAQNIYNARCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 340
Query: 207 QSGYSE--AGVAFPQMANAAAIAAAFGGGLP-------------------------PGIT 239
+ ++ AG FP AI A G +P PG+
Sbjct: 341 AAAFASPYAGAGFPP---TFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAGRIALPGLA 397
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 398 GAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAM 456
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
L G L GK + + SKH N+ QG T +Y +S L+RF + +KN++
Sbjct: 457 SHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIF 515
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P ++E+++ +G IV F +K AL+ + E+A +AL+
Sbjct: 516 PPSATLHLSNIPPSISEDDLKILFSSNGGIVMGFKFFQKDRKMALIQMGSVEEAIQALID 575
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 576 LHNHDLGENHHLRVSFSK 593
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 87 NGNDSKKFKGDSRSAGVPSRVIHIRKLPNDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 144
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 145 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 187
>gi|344271491|ref|XP_003407571.1| PREDICTED: regulator of differentiation 1 [Loxodonta africana]
Length = 581
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 173/498 (34%), Positives = 264/498 (53%), Gaps = 76/498 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + ++++E +++ L PFG +T L++L+ K+QA L+M +A+ + +YT
Sbjct: 85 SPSRVLHLRKIPNDVTEAEVISLGLPFGKVTNLLILKGKSQAFLEMASEEAAVTMVNYYT 144
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------------------MEQNAQG 92
V P +R + VY+Q+S+H+EL T +
Sbjct: 145 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAISAAQPGSLALSGAPTNEGTVL 204
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 205 PGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAH 262
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS------ 206
AR +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 263 YARMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMA 321
Query: 207 ---------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGIT 239
S Y+ A + FPQ A + +A+ A G G + PG
Sbjct: 322 AAFGAPGIISSPYAGAAGFGPAIGFPQAAGLSVSAVPGALGPLAITSSAVTGRMTIPGAG 381
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA+
Sbjct: 382 GIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 441
Query: 300 HFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 442 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIF 500
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P+ +HLS +P VT +++ + + G V F +K AL+ + E+A +AL+
Sbjct: 501 PPSATLHLSNIPPSVTVDDLKNLFTDAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 560
Query: 412 KHASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 561 LHNHDLGENHHLRVSFSK 578
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
T Y N N N+ K R CSP++++HL +P DVTE E++S G + N L
Sbjct: 65 TGVYANGNDNK----KFKGDRPPCSPSRVLHLRKIPNDVTEAEVISLGLPFGKVTN--LL 118
Query: 388 EMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 119 ILKGKSQAFLEMASEEAA 136
>gi|297270365|ref|XP_001099980.2| PREDICTED: regulator of differentiation 1-like [Macaca mulatta]
Length = 860
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 169/494 (34%), Positives = 263/494 (53%), Gaps = 70/494 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 365 PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 424
Query: 64 VQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR------ 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 425 ITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLP 484
Query: 100 ----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 485 GQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAK 544
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGY 210
+L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS + +
Sbjct: 545 MALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAF 603
Query: 211 SEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGTN 242
G+ A AA A A G G L PG +G
Sbjct: 604 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIP 663
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L
Sbjct: 664 GNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHL 723
Query: 303 KGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTK 355
G L+GK L SKH + +G + T ++ NS L+RF + +KN++ P+
Sbjct: 724 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSA 783
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS 415
+HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 784 TLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 843
Query: 416 SLGGS-IIRISFSQ 428
LG + +R+SFS+
Sbjct: 844 DLGENHHLRVSFSK 857
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 349 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 406
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 407 LEMASEEAA 415
>gi|334332915|ref|XP_001376108.2| PREDICTED: regulator of differentiation 1 [Monodelphis domestica]
Length = 582
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 263/497 (52%), Gaps = 76/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + ++++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 87 PSRVLHLRKIPNDVTETEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 146
Query: 64 VQPTIRGRNVYVQFSSHQELTT---------------------------MEQNAQG---R 93
V P +R + V++Q+S+H+EL T ++G
Sbjct: 147 VTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVNAVQSGSLALTAAPGSEGGVLP 206
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T+EVL+Q+FS G V +I+TF K+ FQAL+QY +A
Sbjct: 207 GQSP--VLRIIVENLFYPVTLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNAHY 264
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QS 208
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP+ G+PS +
Sbjct: 265 AKMTLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPSLDPTMAA 323
Query: 209 GYSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITG 240
+ G+ A AA A A G G L PG+ G
Sbjct: 324 AFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITTSAVTGRMAIPGVPG 383
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+LVSNLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 384 VPGNSVLLVSNLNPDAITPHGLFILFGVYGDVQRVKIMFNKKENALVQMADANQAQLAMN 443
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 444 HLSGQRLYGKVLRATLSKHQLVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIYP 502
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 503 PSATLHLSNIPPSVMVDDLKNLFTEAGCTVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 562
Query: 413 HASSLGGS-IIRISFSQ 428
H LG + +R+SFS+
Sbjct: 563 HNHDLGENHHLRVSFSK 579
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE E++S G + N L + GK QA
Sbjct: 71 NGNDSKKFKGDRSPCSPSRVLHLRKIPNDVTETEVISLGLPFGKVTN--LLMLKGKSQAF 128
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 129 LEMASEEAA 137
>gi|449273011|gb|EMC82640.1| Polypyrimidine tract-binding protein 1, partial [Columba livia]
Length = 525
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 174/510 (34%), Positives = 261/510 (51%), Gaps = 91/510 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M ++ + +YT
Sbjct: 19 PSRVIHIRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEASNTMVNYYTT 78
Query: 64 VQPTIRGRNVYVQFSSHQELTT-----------MEQNAQG-------------------- 92
V P +R + +Y+QFS+H+EL T + Q AQ
Sbjct: 79 VTPVLRSQPIYIQFSNHKELKTDSSANQAVTCLVLQRAQAALQAVNSVQSGNLALLASPA 138
Query: 93 --------RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+Q
Sbjct: 139 AVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQ 196
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------ 198
Y SA A+ SL G+NIY+ CC L I+FS L L V YNN++SRD+T P+LP
Sbjct: 197 YADPVSAQHAKLSLDGQNIYNACCTLRIEFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQP 256
Query: 199 ------AEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP----------------- 235
A G P AG FP A AI A G +P
Sbjct: 257 ALDPAMAAAFGAPGIISAPYAGAGFPP---AFAIPQAAGLTVPNVHGALAPLAIPTAAAA 313
Query: 236 ---------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 286
PG+ G + +LVSNL +R+ LF LF +YG++ R+K+L K ++AL
Sbjct: 314 AAAAGRIAIPGLAGAGN-SVLLVSNLIPERVTPQCLFILFGVYGDVQRVKILFKKKENAL 372
Query: 287 VQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRF 339
VQM DG QA+LA+ L G L GK + + SKH + D T +Y NS L+RF
Sbjct: 373 VQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPRDGQEDHGLTKDYGNSPLHRF 432
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
+ +KN++ P+ +HLS +P +TEE++ +G +V F +K AL+
Sbjct: 433 KKPGSKNFQNIFPPSATLHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQM 492
Query: 400 ETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ E+A ++L+ H LG +R+SFS+
Sbjct: 493 GSLEEAIQSLIDLHNHDLGENHHLRVSFSK 522
>gi|348510807|ref|XP_003442936.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oreochromis
niloticus]
Length = 575
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 168/503 (33%), Positives = 256/503 (50%), Gaps = 78/503 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR + ++I+E +++ L PFG +T L+ML+ KNQA L++ A + +Y++
Sbjct: 70 PSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKGKNQAFLELNSEECAQTMVSYYSS 129
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP-------------------------- 97
V P IR +Y+Q+S+H+EL T Q R
Sbjct: 130 VTPVIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGSVAISADAGSMAG 189
Query: 98 -----NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+ +L V + ++ YP+T++VLHQ+FS G V KI+TF K+ FQALIQY +A
Sbjct: 190 AAAAQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQ 249
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK---------- 202
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP
Sbjct: 250 HAKMSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSIDHQAMA 309
Query: 203 ------GRPSQSGYS------------EAGVAFPQMANAAAIAAAFGGGLP--------- 235
G S S Y +AG++ P + +A A G+
Sbjct: 310 AAFAAPGIISASPYGGAHAFPPTFAIQQAGLSVPGIPSALASLGMGPTGMAAAAAAASRL 369
Query: 236 --PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G++ +LVSNLN + + LF LF +YG+++R+K+L NK ++AL+QM DG
Sbjct: 370 GLSGLSAAGGHNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKKENALIQMSDGT 429
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRNAAKN 346
QA+LA+ L G L G+ + V SKH + + HE + NS L+RF + +KN
Sbjct: 430 QAQLAMSHLNGQRLHGRAMRVTLSKHTTVQLPREGHEDQGLTKDFSNSPLHRFKKPGSKN 489
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y P+ +HLS +P V E+++ G+ V F +K AL+ + E+A
Sbjct: 490 YSNIFPPSATLHLSNIPPSVVEDDLRRLFASSGATVKAFKFFQKDRKMALIQMGSVEEAI 549
Query: 407 EALVCKHASSLG-GSIIRISFSQ 428
E+L+ H LG +R+SFS+
Sbjct: 550 ESLIEFHNHDLGENHHLRVSFSK 572
>gi|213513374|ref|NP_001133504.1| polypyrimidine tract-binding protein 2 [Salmo salar]
gi|209154262|gb|ACI33363.1| Polypyrimidine tract-binding protein 2 [Salmo salar]
Length = 520
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 167/474 (35%), Positives = 258/474 (54%), Gaps = 61/474 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +E SE +++ L PFG +T ++ L+ KNQA L++ +AI + +Y+
Sbjct: 56 PSRVLHIRKLPNETSETEVIALGLPFGKVTNILTLKGKNQAFLELGTEEAAITMVNYYST 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR-----------GDEPNR------------I 100
V P +R V++Q+S+H+EL T N + + G P +
Sbjct: 116 VTPHVRNVPVFIQYSNHKELKTDAGNQRAQAVLQAVSAVQGGGTPTSGSDLALTAASSPV 175
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L + I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ +A A+ +L G
Sbjct: 176 LRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPSTAQQAKIALDG 235
Query: 161 RNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQM 220
+NIY+ CC L I +S L L V YNN++SRD+T P LPA G+P+ P M
Sbjct: 236 QNIYNSCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGD-GQPAMD---------PNM 285
Query: 221 ANA--AAIAAAFGGGLPP--------------GITGTNDRCTVLV-SNLNSDRIDEDKLF 263
A A + + G L P ++G + VL+ SNLN + + LF
Sbjct: 286 AAAFQGKDSNSLLGALSPLNAAAAAAAAAGRVALSGHSGSSGVLLASNLNEEMVTPQSLF 345
Query: 264 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT 323
LF +YG+ R+K+L NK D AL+QM D QA+LA+ L G ++GK + V SKH ++
Sbjct: 346 TLFGVYGDTQRVKILYNKKDSALIQMADASQAQLAMSHLNGQKMYGKVIRVALSKHTSVQ 405
Query: 324 ---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
G D T ++ NS L+RF + +KN++ P+ +HLS +P DVTEE++
Sbjct: 406 LPRDGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPSTTLHLSNIPTDVTEEDLRLLFS 465
Query: 377 EHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
G VN K F+ K AL+ T E+A + L+ H ++G + +R+SFS+
Sbjct: 466 NAGGTVNAFKFFQ--DHKMALLQMSTVEEAIQGLIDLHNYNMGDNHHLRVSFSK 517
>gi|391330010|ref|XP_003739458.1| PREDICTED: polypyrimidine tract-binding protein 3-like [Metaseiulus
occidentalis]
Length = 588
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 181/484 (37%), Positives = 262/484 (54%), Gaps = 66/484 (13%)
Query: 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY--TN 63
+V+H+RNV ++ S++++LQL PFG IT ++ LR KNQA L+M+ SA ++++ T+
Sbjct: 107 RVVHLRNVPNDASDSEILQLGIPFGKITNILQLRGKNQAFLEMETEVSAGQMVEYFAKTS 166
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQG----------------------------RGD 95
P IRGR +YVQ S+H+EL + N G G
Sbjct: 167 SPPQIRGRTIYVQQSNHRELK-VNDNGHGMLLNSTQVALAAAQALVDVGSGEISPTHNGQ 225
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
N +L V I + LYPIT++VL+ +FS G V KIVTF K+ QAL+QY +A A+
Sbjct: 226 TLNTVLRVIIENQLYPITLDVLNSLFSRIGKVLKIVTFNKNNTLQALVQYGDALAAQAAK 285
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA-- 213
+L G++IY+ CC L I++S L +L V YNN++SRDFTNP+LP G P+ A
Sbjct: 286 MTLDGQHIYNSCCTLRIEYSKLQQLNVKYNNDKSRDFTNPSLPT---GDPTLDNLGLANP 342
Query: 214 -GVAFPQMANAAA-IAAAF--------GGGLPPG---------ITGTNDRCTVLVSNLNS 254
G+ AN + + AAF G LP + GT C +LVSNLN
Sbjct: 343 LGMLHSPFANLGSHLTAAFNPPTLPLGGFALPAAQALGVASLRLPGTPQSCVLLVSNLNE 402
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
+ D LF LF +YG++IR+K++ NK D AL+QM + QA +A+ L LFGK+L V
Sbjct: 403 QTVTPDALFTLFGVYGDVIRVKIMFNKKDSALIQMAEPQQAHVAMTHLDKIKLFGKQLRV 462
Query: 315 NFSKH-----PNITQ--GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SKH P Q T +Y++S L+RF + +KNY+ P+ +HLS +P
Sbjct: 463 TPSKHHMVQLPKEGQPDAGLTKDYISSPLHRFKKPGSKNYQNIYPPSATLHLSNIPPTCG 522
Query: 368 EEEIVSHLEEHG--SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRI 424
EE+I E G +I+ K F + +K AL+ + E A AL+ H L S +R+
Sbjct: 523 EEKIQESFAEAGCAAIMGFKFFPKD-RKMALLQLPSVEDAVVALIKMHNYQLSESSHLRV 581
Query: 425 SFSQ 428
SFS+
Sbjct: 582 SFSK 585
>gi|71896363|ref|NP_001026106.1| polypyrimidine tract-binding protein 1 [Gallus gallus]
gi|60098495|emb|CAH65078.1| hypothetical protein RCJMB04_3b17 [Gallus gallus]
Length = 526
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 169/505 (33%), Positives = 257/505 (50%), Gaps = 88/505 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +R + +Y+QFS+H+EL T ++
Sbjct: 87 VTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALPAPAAAVDAGMA 146
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 147 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSA 204
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +P
Sbjct: 205 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDN-QPPLDQTM 263
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + A+ A G G PP
Sbjct: 264 AAAFGAPGIIPASPYA---GAGFPPTFAIPQAAGLTVQNVHGALAPLAIPAAAAAAAAGR 320
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF F +YG++ R+K+L NK ++ALVQM DG
Sbjct: 321 IAIPGLAGAGN-SVLLVSNLNPERVTPQCLFIPFGVYGDVQRVKILFNKKENALVQMADG 379
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAA 344
QA+LA+ L G L GK + + SKH + QG T +Y NS L+RF + +
Sbjct: 380 NQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDQGL-TKDYGNSPLHRFKKPGS 438
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ +HLS +P + EE++ +G +V F +K AL+ + E+
Sbjct: 439 KNFQNIFPPSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEE 498
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H LG +R+SFS+
Sbjct: 499 AIQSLIDLHNHDLGENHHLRVSFSK 523
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 10 NGNDSKKFKGDSRSAGVPSRVIHVRKLPSDVTEAEVISLGLPFGKVTN--LLMLKGKNQA 67
Query: 396 LVLFETEEQA 405
+ TEE A
Sbjct: 68 FIEMNTEEAA 77
>gi|432964272|ref|XP_004086906.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oryzias
latipes]
Length = 541
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 169/467 (36%), Positives = 251/467 (53%), Gaps = 47/467 (10%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + E + +++ L PFG +T ++ LR KNQA L+M +AI + +Y
Sbjct: 77 PSRVIHIRRLPTEAMDAEVIALGLPFGKVTNILTLRGKNQAFLEMGTEEAAITMVNYYNT 136
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQN------------AQGRGDE--------PNRILLV 103
V P +R VYVQFS+H+EL T + Q G E + +L +
Sbjct: 137 VPPHVRNSPVYVQFSNHKELKTDAASQRTQAVLQAVSAVQPPGSEVQDVLAAASSPVLRI 196
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+QY A A+ +L G+NI
Sbjct: 197 IIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYSDPVQAQHAKLALDGQNI 256
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANA 223
Y+ CC L I FS L L V YNN++SRD++ P LPA RP+ A ++
Sbjct: 257 YNSCCTLRIDFSKLVNLNVKYNNDKSRDYSRPELPAGD-SRPTLDPSVAAALSKDSTPLL 315
Query: 224 AAIAAAF-------------GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYG 270
I A G PG G+ +L SNLN + + LF LF +YG
Sbjct: 316 CKIPGALNPLSAAAAAAAAAGRVALPGQAGSGG--VLLASNLNEEMVTPQSLFTLFGVYG 373
Query: 271 NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD--- 327
++ R+K+L NK D AL+QM D QA+LA+ L G ++GK + V SKH ++ D
Sbjct: 374 DVQRVKILYNKKDSALIQMCDPSQAQLAMSHLNGQKMYGKIIRVTLSKHQSVALPRDGLD 433
Query: 328 ----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN 383
T ++ NS+L+RF + +KN++ P+ +HLS + QDVTEE++ G V
Sbjct: 434 DQGLTKDFTNSSLHRFKKPGSKNFQNIFPPSATLHLSNVLQDVTEEDLRLLFSNTGGTVK 493
Query: 384 T-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
K F+ +K AL+ T E+A +AL+ H ++G + +R+SFS+
Sbjct: 494 AFKFFQ--DRKMALIQMSTVEEAIQALIDLHNYNMGANQHLRVSFSK 538
>gi|403266191|ref|XP_003925277.1| PREDICTED: polypyrimidine tract-binding protein 3 [Saimiri
boliviensis boliviensis]
Length = 558
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 259/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K QA L+M +A+ + +YT
Sbjct: 62 SPSRVLHLRKIPCDVTEAEIISLGLPFGRVTNLLMLKEKRQAFLEMASEEAAVTMVNYYT 121
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 122 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 181
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 182 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 241
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 242 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 300
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 301 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 360
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 361 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 420
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 421 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 479
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT + + + E G V F +K AL+ + E+A +AL+ H
Sbjct: 480 SATLHLSNIPPSVTVDGLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 539
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 540 NHDLGENHHLRVSFSK 555
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + K+QA
Sbjct: 47 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGRVTN--LLMLKEKRQAF 104
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 105 LEMASEEAA 113
>gi|347970969|ref|XP_318405.4| AGAP003945-PA [Anopheles gambiae str. PEST]
gi|333469570|gb|EAA13599.5| AGAP003945-PA [Anopheles gambiae str. PEST]
Length = 601
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 179/532 (33%), Positives = 264/532 (49%), Gaps = 104/532 (19%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+T+ S+V+H+RN+ +E+SE +++QL PFG +T +++L+ KNQA ++M D +A +
Sbjct: 67 ITKTSRVVHIRNIPNEVSEAEIMQLGLPFGRVTNVLVLKGKNQAFIEMGDETAASTMVSV 126
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNA--------QGRGDEP--------------- 97
+ P +RGR VYVQ+S+H+EL + +A Q P
Sbjct: 127 FHANPPPLRGRTVYVQYSNHRELKIDQNHAIAVTQDLTQSPTGSPLPLSIEHTNSNSQNA 186
Query: 98 --------------------------NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIV 131
N +L V + +LYP++++VLHQ+F G V KIV
Sbjct: 187 SSNNTNNSSTTPSSGGGGGGGGSGAPNTVLRVIVESLLYPVSLDVLHQIFQRFGKVLKIV 246
Query: 132 TFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRD 191
TF K+ FQALIQY +A AR+SL G+NIY+GCC L I S L L V YNN++SRD
Sbjct: 247 TFTKNNSFQALIQYPDAQTAQTARASLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRD 306
Query: 192 FTNPNLPAEQKG-----------------------RPSQS------GYSEAGVAFP--QM 220
+TNP+LP+ + G RP S G + GV P
Sbjct: 307 YTNPSLPSGEPGSDVIASAGGLVSASDLLLLATGQRPQLSRDRLVNGLATPGVMPPFGLG 366
Query: 221 ANAAAIAAAFGGGLPP---------GITGTNDRCTV-------LVSNLNSDRIDEDKLFN 264
A+A+A+GG LP G GT + V LVSNLN + + D LF
Sbjct: 367 LGTPALASAYGGALPSLNAFALASNGALGTPNPANVRGLSNVLLVSNLNDEMVTPDALFT 426
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-- 322
LF +YG++ R+K+L NK D AL+QM + +QA LA+ L ++ K + V SKH +
Sbjct: 427 LFGVYGDVQRVKILYNKKDSALIQMAEPYQAYLAMTHLDKLRIWNKTIRVMPSKHQAVQL 486
Query: 323 -----TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 377
T +Y + L+RF + +KNY+ P+ +HLS +P VTE+EI +
Sbjct: 487 PKEGQPDAGLTRDYAQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPATVTEDEIKEAFTK 546
Query: 378 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
+ V F K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 547 NSFEVKAFKFFPKDHKMALIQLSSIEEAVCALIKMHNYQLSESNHLRVSFSK 598
>gi|198435860|ref|XP_002127727.1| PREDICTED: similar to polypyrimidine tract binding protein 1 [Ciona
intestinalis]
Length = 516
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 268/478 (56%), Gaps = 50/478 (10%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
++ SKV+H+R++ ++++N+++QL +G +T ++ML+ KNQA L+M+D A +
Sbjct: 38 SQISKVVHLRSLPGDVTDNEVIQLGLSYGHVTNVLMLKGKNQAFLEMEDEEIANQMVSSS 97
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT-----------MEQNAQGRGDEPNRILLVTIHHMLY 110
PTIR R +YVQFS+H+EL T + + Q R PN +L I +MLY
Sbjct: 98 GISPPTIRQRIIYVQFSNHKELKTDSSPNQLKTQAILEAMQKRDGGPNHVLRAVIENMLY 157
Query: 111 PITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQL 170
PIT++VLH +FS G + KI+TF KS+ FQALIQ + A+ SL G+NIY+GCC L
Sbjct: 158 PITLDVLHTIFSKFGVILKIITFTKSSQFQALIQMADALQSQTAKLSLDGQNIYNGCCTL 217
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQ-----KGRPSQSGYSEAGVAFPQMAN--A 223
I++S L L V +NN++SRD+T +LP+ + G QS AG+ N A
Sbjct: 218 RIEYSKLSSLNVKFNNDKSRDYTRNDLPSGEASILGTGSTLQSMLGGAGLMPSPYQNNIA 277
Query: 224 AAI------AAAFGGGLPPGITGTN----------------DRCTVL-VSNLNSDRIDED 260
AAI + A G +TGTN + +VL VSNLN + +
Sbjct: 278 AAIQQSQLASLANASGALQHLTGTNMAGNSNHMVTQLAAMVGQTSVLHVSNLNEEMVTPQ 337
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K++ K +ALVQM D QA+ + +L G L+ + L++ S+H
Sbjct: 338 SLFILFGVYGDVNRVKIMYQKKSNALVQMNDHQQAQTVIKYLHGVKLYDRPLQIMMSRHN 397
Query: 321 NIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ +G + T +Y NS L+RF + +KN++ +P++++HLS +P D E + S
Sbjct: 398 QVQMPREGQEMAKLTQDYSNSPLHRFKKPGSKNFQNIFAPSEVLHLSNIPNDTEENFLRS 457
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
EE G +V K F + ++ AL+ + E+A LV H LG S +R+SFS+ Q
Sbjct: 458 KFEEVGVVVGFKFF-VKDRRMALIQMSSLEEAILCLVNLHNLKLGESNHLRVSFSKGQ 514
>gi|345323919|ref|XP_001506947.2| PREDICTED: polypyrimidine tract-binding protein 1 [Ornithorhynchus
anatinus]
Length = 707
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 169/502 (33%), Positives = 261/502 (51%), Gaps = 83/502 (16%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT V
Sbjct: 208 SRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVSYYTTV 267
Query: 65 QPTIRGRNVYVQFSSHQELTT-----------------------MEQNAQGRGDEP---- 97
P +R + +++QFS+H+EL T M +A +
Sbjct: 268 APVLRSQPIFIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNMALSASAAAVDAGMAI 327
Query: 98 ---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+ +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A
Sbjct: 328 AGLSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPMSAQHA 387
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS A
Sbjct: 388 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAAA 446
Query: 215 VAFPQMANAAAIAAAFGGGLPP-------------------------------------- 236
P + +A+ A G G PP
Sbjct: 447 FGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIA 503
Query: 237 --GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
G+TG + +LVSNLN +R LF LF +YG++ R+K+L NK ++ALVQM DG Q
Sbjct: 504 IPGLTGAGN-SVLLVSNLNPERGTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQ 562
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNY 347
A+LA+ L G L GK + + SKH + +G + T +Y NS L+RF + +KN+
Sbjct: 563 AQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDRGLTKDYGNSPLHRFKKPGSKNF 622
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
+ P+ +HLS +P +TEE++ + +V F +K AL+ + E+A +
Sbjct: 623 QNIFPPSATLHLSNIPPSITEEDLKMLFSSNSGMVKGFKFFQKDRKMALIQMGSVEEAIQ 682
Query: 408 ALVCKHASSLG-GSIIRISFSQ 428
+L+ H LG +R+SFS+
Sbjct: 683 SLIDLHNHDLGENHHLRVSFSK 704
>gi|148224882|ref|NP_001080169.1| polypyrimidine tract binding protein 1 [Xenopus laevis]
gi|28278766|gb|AAH45068.1| Ptbp1 protein [Xenopus laevis]
Length = 547
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/500 (34%), Positives = 260/500 (52%), Gaps = 86/500 (17%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIHVR + +++E +++ L PFG +T L+ML+ KNQA L+M +A + +Y+NV
Sbjct: 55 SRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAANTIINYYSNV 114
Query: 65 QPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQG 92
P +RG+ +Y+Q+S+H+EL T ++ +
Sbjct: 115 APVLRGQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTPVLSASAAVVDASIAM 174
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + + ++ YP+T++VL Q+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 175 SGQSP--VLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPMSAQ 232
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----- 207
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+
Sbjct: 233 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-GQPTLDQTIA 291
Query: 208 --------SGYSEAGVAFPQMANAAAIAAAFGGGLPP----------------------G 237
S AG FP A AI G L P G
Sbjct: 292 AFGAPGLISTNPYAGAGFPP---AFAIPQGVHGTLTPMALPSAAAAAAAAAGRLGFPGFG 348
Query: 238 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL 297
I G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++AL+QM DG QA+L
Sbjct: 349 IPGNS---VLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALIQMADGNQAQL 405
Query: 298 AVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRY 349
A+ L G L GK L SKH + QG T +Y S L+RF + +KN++
Sbjct: 406 AMSHLNGQRLHGKPLRTTVSKHQTVQLPREGQEDQGL-TKDYSTSPLHRFKKPGSKNFQN 464
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
P+ +HLS +P V+EE++ +G V F +K AL+ + E+A E+L
Sbjct: 465 IFPPSATLHLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESL 524
Query: 410 VCKHASSLG-GSIIRISFSQ 428
+ H +G +R+SFS+
Sbjct: 525 IELHNHDMGENHHLRVSFSK 544
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 331 YMNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
++ SN N N +K + R +++IH+ LP DVTE E++S G + N L
Sbjct: 28 FIMSNAAAANGNDSKKFKGDSRSVAVGSRVIHVRKLPGDVTEAEVISLGLPFGKVTN--L 85
Query: 387 FEMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIREN 435
+ GK QA + TEE A + A L G I I +S + ++ +
Sbjct: 86 LMLKGKNQAFLEMNTEEAANTIINYYSNVAPVLRGQPIYIQYSNHKELKTD 136
>gi|291382801|ref|XP_002708166.1| PREDICTED: ROD1 regulator of differentiation 1-like [Oryctolagus
cuniculus]
Length = 1000
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 263/495 (53%), Gaps = 70/495 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 504 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 563
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
V P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 564 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPSNEGTIL 623
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 624 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 683
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 684 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 742
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 743 FGAPGIMSSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLAITSSAVTGRMAIPGGSGV 802
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 803 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 862
Query: 302 LKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPT 354
L G L+GK L SKH + +G + T ++ NS L+RF + +KN++ P+
Sbjct: 863 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 922
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414
+HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 923 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 982
Query: 415 SSLGGS-IIRISFSQ 428
LG + +R+SFS+
Sbjct: 983 HDLGENHHLRVSFSK 997
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 323 TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
T + T N N N+ K R CSP++++HL +P DVTE E++S G +
Sbjct: 479 TMNSSTPSTANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVT 534
Query: 383 NTKLFEMNGKKQALVLFETEEQA 405
N L + GK QA + +EE A
Sbjct: 535 N--LLMLKGKSQAFLEMASEEAA 555
>gi|58331982|ref|NP_001011140.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|54261503|gb|AAH84469.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|89272472|emb|CAJ82472.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
Length = 554
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/499 (34%), Positives = 260/499 (52%), Gaps = 83/499 (16%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIHVR + +++E +++ L PFG +T L+ML+ KNQA L+M +A + +YTNV
Sbjct: 61 SRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAANTMINYYTNV 120
Query: 65 QPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQG 92
P +R + +Y+Q+S+H+EL T ++
Sbjct: 121 APVLRSQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTTALSASAAAVDAGMAM 180
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + + ++ YP+T++VL Q+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 181 SGQSP--VLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQ 238
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSE 212
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+PS +
Sbjct: 239 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-GQPSLD-QTI 296
Query: 213 AGVAFPQMANAAAIAAAFGGGLPP------GITGTN------------------------ 242
A P + +A A+A G PP G+ GT
Sbjct: 297 AAFGAPGLISANPYASA---GFPPAFAIPQGVHGTLAPLALPSAAAAAAAAAAGRLGIPG 353
Query: 243 ----DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
+LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA
Sbjct: 354 LGIPGNSVLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLA 413
Query: 299 VHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYC 350
+ L G L GK L + SKH + QG T +Y S L+RF + +KN++
Sbjct: 414 MSHLNGQRLHGKPLRITVSKHQTVQLPREGQEDQGL-TKDYSTSPLHRFKKPGSKNFQNI 472
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+ +HLS +P V+EE++ +G V F +K AL+ + E+A E+L+
Sbjct: 473 FPPSATLHLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESLI 532
Query: 411 CKHASSLG-GSIIRISFSQ 428
H +G +R+SFS+
Sbjct: 533 ELHNHDMGENHHLRVSFSK 551
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 335 NLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
NL N N +K + R +++IH+ LP DVTE E++S G + N L +
Sbjct: 38 NLYGSNGNDSKKFKGDSRSVAVGSRVIHVRKLPGDVTEAEVISLGLPFGKVTN--LLMLK 95
Query: 391 GKKQALVLFETEEQA 405
GK QA + TEE A
Sbjct: 96 GKNQAFLEMNTEEAA 110
>gi|296190586|ref|XP_002743247.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1
[Callithrix jacchus]
Length = 558
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 258/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K QA L+M +A+ + +YT
Sbjct: 62 SPSRVLHLRKIPCDVTEAEIISLGLPFGRVTNLLMLKEKRQAFLEMASEEAAVTMVNYYT 121
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 122 PFTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 181
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 182 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 241
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 242 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPAMAAA 300
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 301 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 360
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 361 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 420
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 421 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 479
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT + + + E G V F +K AL+ + E+A +AL+ H
Sbjct: 480 SATLHLSNIPPSVTVDGLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 539
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 540 NHDLGENHHLRVSFSK 555
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + K+QA
Sbjct: 47 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGRVTN--LLMLKEKRQAF 104
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 105 LEMASEEAA 113
>gi|441622594|ref|XP_003264050.2| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 3 isoform 1 [Nomascus leucogenys]
Length = 555
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 174/496 (35%), Positives = 262/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 59 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 118
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------MEQNA---------------QGRGDE---- 96
+ P +R + VY+Q+S+H+EL T Q+A GR +E
Sbjct: 119 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQDALQAVSAVQSGSLALSGGRSNEGTVL 178
Query: 97 PNR--ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P + +L + I ++ Y T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 179 PGQSPVLXIIIENLFYRGTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 238
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 239 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 297
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG G
Sbjct: 298 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGAGGI 357
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 358 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 417
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 418 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 476
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 477 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 536
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 537 NHDLGENHHLRVSFSK 552
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 39 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 91
Query: 387 FEMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 92 LMLKGKSQAFLEMASEEAA 110
>gi|390458239|ref|XP_003732081.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2
[Callithrix jacchus]
Length = 524
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 258/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGRVTNLLMLKEKRQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 88 PFTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPAMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 326
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 327 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 386
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 387 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 445
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT + + + E G V F +K AL+ + E+A +AL+ H
Sbjct: 446 SATLHLSNIPPSVTVDGLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 505
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 506 NHDLGENHHLRVSFSK 521
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 8 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGRVTN--L 60
Query: 387 FEMNGKKQALVLFETEEQA 405
+ K+QA + +EE A
Sbjct: 61 LMLKEKRQAFLEMASEEAA 79
>gi|405953685|gb|EKC21299.1| Regulator of differentiation 1 [Crassostrea gigas]
Length = 764
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 164/484 (33%), Positives = 259/484 (53%), Gaps = 60/484 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R++ + +E D++QL P+G ++ +++L+ KNQA L+ D +A+ + F+
Sbjct: 279 PSRVVHIRSLPPDCTEADVVQLGMPYGKMSNVLLLKQKNQAFLEFLDEQAAVTMVSFHQQ 338
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNA-----------------QGRGDEPNR--ILLVT 104
IR + VYVQFS+H+EL T + N+ G +E + L +
Sbjct: 339 NPAQIRMKPVYVQFSNHKELKTDQANSFQNATAQAALQAASAVMGGPTEEGQKRTTLRII 398
Query: 105 IHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+ H++YP+ +EVL+Q+FS G V K++ F K+ FQALIQ +A A+ SL G+NIY
Sbjct: 399 VEHLVYPVGIEVLYQIFSKFGKVLKMIIFTKNNSFQALIQMSDPVAANAAKLSLDGQNIY 458
Query: 165 DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMAN-- 222
+GCC L I +S L+ L V YNN++SRDFTNPNLP+ G + +G M
Sbjct: 459 NGCCTLRIDYSKLNNLNVKYNNDKSRDFTNPNLPSGDPGLDQAMPFGGSGSLVTPMVPGM 518
Query: 223 AAAIAAAFG-----GGLP-------------PGITGTNDRCT------------VLVSNL 252
AA A+G GG P P G T +LVSNL
Sbjct: 519 GAAPLTAYGAANVVGGTPVYAQVPQMSSYGVPSALGAARMMTLNAAAAGAGNAVLLVSNL 578
Query: 253 NSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRL 312
+ ++ D LF LF +YG++ R+K+L NK D+ALVQM + QA+LA+ L ++GK +
Sbjct: 579 DEQKVTPDALFTLFGVYGDVHRVKILFNKKDNALVQMAEPHQAQLAIAHLDKVKVWGKNI 638
Query: 313 EVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD 365
V SKH + + T ++ NS L+RF R +KN + P+ ++HLS +P +
Sbjct: 639 RVTQSKHTLVQMPKEGQPDAGLTKDFTNSPLHRFKRPGSKNCQNIFPPSAVLHLSNIPPN 698
Query: 366 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRI 424
+ E+ + +HG + K F + +K AL+ + ++A AL+ H L + +R+
Sbjct: 699 IEEDFLSDAFAQHGQVKAFKFFPKD-RKMALIQMASVDEAVTALIAMHNYPLSDTNHLRV 757
Query: 425 SFSQ 428
SFS+
Sbjct: 758 SFSK 761
>gi|432103873|gb|ELK30706.1| Polypyrimidine tract-binding protein 2 [Myotis davidii]
Length = 538
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 168/515 (32%), Positives = 268/515 (52%), Gaps = 92/515 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +A+ + +Y+
Sbjct: 23 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAVTMVNYYSA 82
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 83 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTAVSESAVTPA 142
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+F+ G V KI+TF K+ FQAL+QY +A A+
Sbjct: 143 QSPVLRIIIDNMYYPVTLDVLHQIFTKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 202
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYS 211
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ + ++
Sbjct: 203 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 261
Query: 212 EAGVAFPQMANAAAIAAAF--------------------GGGLP---------------- 235
+ M +AA AA GLP
Sbjct: 262 KETSLLGTMWSAAPSPAALVLKLVFVNDLCVFRKIRFILKLGLPVAAVPGALSPLAIPNA 321
Query: 236 --------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK 281
PG++ + +LVSNLN + + LF LF +YG++ R+K+L NK
Sbjct: 322 AAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNK 380
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNS 334
D AL+QM DG Q++LA++ L G ++GK + V SKH + +G D T ++ NS
Sbjct: 381 KDSALIQMADGHQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNS 440
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KN++ P+ +HLS +P V EE++ + G V F K
Sbjct: 441 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKM 500
Query: 395 ALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 501 ALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 535
>gi|390332444|ref|XP_003723502.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 5
[Strongylocentrotus purpuratus]
Length = 555
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 251/479 (52%), Gaps = 53/479 (11%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 79 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 138
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT-----------------------------MEQNAQ- 91
T++ + GR +Y QFS H+EL T ++Q+ Q
Sbjct: 139 THMPRNVHGRQIYCQFSKHKELKTDFAHTQQQIASQVALQAAQQHPMLQPHPMLQQHPQH 198
Query: 92 -------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
G N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q
Sbjct: 199 ATHPKVPDTGGGVNTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQ 258
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
+ A VA+ L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP + G
Sbjct: 259 FSDASQAAVAKLELDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLP-QGDGL 316
Query: 205 PSQSGYSEAGVAFPQM-ANAAAIAAAFG----GGLPPGITGTNDRCTVLVSNLNSDRIDE 259
+ A + P A +A+ G PG+ + +LVSNL + +
Sbjct: 317 TGVDPSTAAMLGVPGFPAGLSALPHHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTP 376
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L K D+AL+QM D Q++LA+ L G L+GK++ V SKH
Sbjct: 377 QALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASKH 436
Query: 320 PNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ T ++ S L+RF + +KN+ P+ +HLS +P V EE +
Sbjct: 437 QMVQLPKEGQPDAGLTKDFSTSPLHRFKKPGSKNFLNIYPPSSTLHLSNIPPTVDEETLK 496
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
+HG++ N K F + +K AL+ + E+A AL+ H L S +R+SFS+ Q
Sbjct: 497 EAFSQHGTVANFKFFPKD-RKMALLQMGSVEEAIHALIAMHNYQLAESNHLRVSFSKAQ 554
>gi|115634663|ref|XP_001176080.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 617
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 177/512 (34%), Positives = 259/512 (50%), Gaps = 85/512 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 107 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 166
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT-----------------------------MEQNAQ- 91
T++ + GR +Y QFS H+EL T ++Q+ Q
Sbjct: 167 THMPRNVHGRQIYCQFSKHKELKTDFAHTQQQIASQVALQAAQQHPMLQPHPMLQQHPQH 226
Query: 92 -------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
G N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q
Sbjct: 227 ATHPKVPDTGGGVNTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQ 286
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------ 198
+ A VA+ L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP
Sbjct: 287 FSDASQAAVAKLELDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLPQGDGLT 345
Query: 199 ----------------------AEQKGRP-------SQSGYSEAGV-AFPQMANA--AAI 226
A G P S +GY +AGV FP +A
Sbjct: 346 GVDPSTAAMLGFGGAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALPHHA 405
Query: 227 AAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 286
AAA G PG+ + +LVSNL + + LF LF +YG++ R+K+L K D+AL
Sbjct: 406 AAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNAL 465
Query: 287 VQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRF 339
+QM D Q++LA+ L G L+GK++ V SKH + T ++ S L+RF
Sbjct: 466 IQMSDPNQSQLAMKHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDAGLTKDFSTSPLHRF 525
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
+ +KN+ P+ +HLS +P V EE + +HG++ N K F + +K AL+
Sbjct: 526 KKPGSKNFLNIYPPSSTLHLSNIPPTVDEETLKEAFSQHGTVANFKFFPKD-RKMALLQM 584
Query: 400 ETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
+ E+A AL+ H L S +R+SFS+ Q
Sbjct: 585 GSVEEAIHALIAMHNYQLAESNHLRVSFSKAQ 616
>gi|432101132|gb|ELK29416.1| Polypyrimidine tract-binding protein 1 [Myotis davidii]
Length = 566
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/504 (34%), Positives = 269/504 (53%), Gaps = 84/504 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 65 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 124
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 125 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLSLAASAAAVDAGMA 184
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ----- 146
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 185 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSA 242
Query: 147 ---------------------LRP-SAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
P SA A+ SL G+NIY+ CC L I FS L L V Y
Sbjct: 243 QHAKLIITFTKNKQFQALLQYAEPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 302
Query: 185 NNERSRDFTNPNLPAEQKGRPS--QSGYSEAGVAFPQMANA---------AAIAAAFGGG 233
NN++SRD+T P+LP+ +PS Q+ + G++ P + A AA AAA G
Sbjct: 303 NNDKSRDYTRPDLPSGDS-QPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRI 361
Query: 234 LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
PG+ G + +LVSNLN + + LF LF +YG++ R+K+L NK ++ALVQM DG
Sbjct: 362 AIPGLGGAGN-SVLLVSNLNPEVVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 420
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAK 345
QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +K
Sbjct: 421 QAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSK 479
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N++ P+ +HLS +P ++E+++ +G IV F +K AL+ + E+A
Sbjct: 480 NFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEA 539
Query: 406 TEALVCKHASSLG-GSIIRISFSQ 428
+AL+ H LG +R+SFS+
Sbjct: 540 IQALIDLHNHDLGENHHLRVSFSK 563
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 48 NGNDSKKFKGDNRSTGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 105
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 106 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 148
>gi|313234966|emb|CBY24911.1| unnamed protein product [Oikopleura dioica]
Length = 788
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 167/473 (35%), Positives = 255/473 (53%), Gaps = 55/473 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPF---GVITKLVMLRAKNQALLQMQDVPSAINALQ 59
E S+V+HVR + +++E+++ +L PF G++ + L++KNQA L++ ++ A Q
Sbjct: 315 EGSRVLHVRGLPDDVTEHEIWKLVLPFKTLGLMVNFMHLKSKNQAFLEVDNIEMAREMAQ 374
Query: 60 FYTNVQPTIRGRNVYVQFSSHQELTTME--------------QNAQGRGDEPNRILLVTI 105
+Y P IR R +++QFS+H++L+ Q A+G N +L V +
Sbjct: 375 YYLLNPPCIRQRTIHLQFSNHKQLSPPSSALQEKLLMDLRKFQEAEGGS---NHVLRVVV 431
Query: 106 HHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD 165
+M YP T+EVL +FS G V K++TF K+ FQALIQ +A A+ SL G+N+Y
Sbjct: 432 ENMTYPTTLEVLTHLFSQFGNVLKVITFTKNNQFQALIQMDCESNAQAAKLSLDGKNVYT 491
Query: 166 GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP-----------AEQKGRPSQSGY---- 210
CC L I +S L +L V +NNE+SRD+T P LP ++Q +P QSG
Sbjct: 492 NCCTLRIDYSKLQQLNVKFNNEKSRDYTRPELPQCDDYNSHQHHSQQMIQPYQSGLMGQA 551
Query: 211 -SEAGV------AFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLF 263
AG+ P + N + PP T +LV+NL+ RI D LF
Sbjct: 552 PQLAGIPTSMMSPIPSIQNHNVPSPYQHASAPPSSGPT----VLLVANLDEQRITCDILF 607
Query: 264 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT 323
LF +YGN++R+K+L NK D+AL+QM D QA A+ L +L K + V FSKH +
Sbjct: 608 TLFGVYGNVLRVKILYNKKDNALLQMADNHQATTALTHLNSRVLHDKPIRVVFSKHQQVQ 667
Query: 324 QGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
D HE + N++L+RF + +KN++ P++ +HLS +P ++ E+ I
Sbjct: 668 LPKDNHEACVLTKDFTNNSLHRFKKPGSKNFQNIHPPSETLHLSNIPPEIEEDRIRELFV 727
Query: 377 EHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
G+I N + F N +K AL+ TE QA EAL+ H L S +R+SFS+
Sbjct: 728 PFGNIKNFRFFH-NDRKMALIEMGTEPQAVEALIELHNVKLSDSNHLRVSFSR 779
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 124/526 (23%), Positives = 224/526 (42%), Gaps = 98/526 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPF---GVITKLVMLRAKNQALLQMQDVPSAINALQ 59
E S+V+HVR + +++E+++ +L PF G++ + L++KNQA L++ ++ A Q
Sbjct: 145 EGSRVLHVRGLPDDVTEHEIWKLVLPFKTLGLMVNFMHLKSKNQAFLEVDNIEMAREMAQ 204
Query: 60 FYTNVQPTIRGRNVYVQFSSHQELTTME-----------QNAQGRGDEPNRILLVTIHHM 108
+Y P IR R +++QFS+H++L+ +N Q N +L V + +M
Sbjct: 205 YYLLNPPCIRQRTIHLQFSNHKQLSPPSSALQEKLLMDLRNFQEAEGGSNHVLRVVVENM 264
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG------RN 162
YP T+EVL +FS G V K++TF K+ FQALIQ +A ++ +G R
Sbjct: 265 TYPTTLEVLTHLFSQFGNVLKVITFTKNNQFQALIQMDCESNAQAMKTEDEGSRVLHVRG 324
Query: 163 IYDGCCQLDIQ-----FSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY------- 210
+ D + +I F L L VN+ + +S++ + + R Y
Sbjct: 325 LPDDVTEHEIWKLVLPFKTLG-LMVNFMHLKSKNQAFLEVDNIEMAREMAQYYLLNPPCI 383
Query: 211 --SEAGVAFPQMANAAAIAAAFGGGLPPGIT-------GTNDRCTVLVSNLNSDRIDEDK 261
+ F + ++A L + G+N V+V N+ E
Sbjct: 384 RQRTIHLQFSNHKQLSPPSSALQEKLLMDLRKFQEAEGGSNHVLRVVVENMTYPTTLE-V 442
Query: 262 LFNLFSLYGNIIR-IKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK--RLEVNFSK 318
L +LFS +GN+++ I +N AL+QM A+ A L G ++ L +++SK
Sbjct: 443 LTHLFSQFGNVLKVITFTKNNQFQALIQMDCESNAQAAKLSLDGKNVYTNCCTLRIDYSK 502
Query: 319 -----------------HPNITQGAD--THEYMNSNLNRF-------------------- 339
P + Q D +H++ + + +
Sbjct: 503 LQQLNVKFNNEKSRDYTRPELPQCDDYNSHQHHSQQMIQPYQSGLMGQAPQLAGIPTSMM 562
Query: 340 -------NRNAAKNYRYCCS-----PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
N N Y++ + PT ++ + Q +T + + + +G+++ K+
Sbjct: 563 SPIPSIQNHNVPSPYQHASAPPSSGPTVLLVANLDEQRITCDILFTLFGVYGNVLRVKIL 622
Query: 388 EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433
N K AL+ QAT AL ++ L IR+ FS+ Q ++
Sbjct: 623 -YNKKDNALLQMADNHQATTALTHLNSRVLHDKPIRVVFSKHQQVQ 667
>gi|297275608|ref|XP_001092088.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Macaca
mulatta]
Length = 556
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 257/506 (50%), Gaps = 89/506 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ S G+NIY+ CC L YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSQDGQNIYNACCTLRXXXXXXXXXXXXYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 349
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 350 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 408
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 409 GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 467
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ + E
Sbjct: 468 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 527
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 528 EAVQALIDLHNHDLGENHHLRVSFSK 553
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSNSAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 139
>gi|351706875|gb|EHB09794.1| Polypyrimidine tract-binding protein 1 [Heterocephalus glaber]
Length = 543
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 257/477 (53%), Gaps = 66/477 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+M++ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLVLPFGKVTNLLMVKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQTVNSVQSGNLALAASVAAVDAGMA 176
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K++ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
AR SL +NIY+ CC L I FS L L V YN ++SR P Q
Sbjct: 235 QHARLSLDRQNIYNTCCTLSIDFSKLTSLNVKYNYDKSRAGFPPTFDIPQ---------- 284
Query: 212 EAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 262
AG++ P++ A AA AA G PG+ G +LVSNLN +R+ L
Sbjct: 285 AAGLSVPKVHGALAPLAIPSAAAAAAVAGRIGIPGL-GAAGNSVLLVSNLNPERVTPQSL 343
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
F LF ++G++ R+K+L NK ++ALVQM DG +A+LA+ L G L GK + + SKH N+
Sbjct: 344 FILFGVHGDVQRVKILFNKKENALVQMADGSRAQLAMSHLDGHKLHGKPIRITLSKHQNV 403
Query: 323 --------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ--DVTEEEIV 372
QG T +Y NS L+RF + +KN++ P+ +HLS +P ++EE++
Sbjct: 404 QLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISISEEDLK 462
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
S +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 463 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 519
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S + G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPSDVTEGEVISLVLPFGKVTN--LLMVKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|432915659|ref|XP_004079197.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oryzias
latipes]
Length = 523
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 263/483 (54%), Gaps = 59/483 (12%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+R + +E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y
Sbjct: 41 SPPSRVLHIRKLPNEVTETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAITMVNYY 100
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT---MEQNAQG----------------------RGDE 96
T V P +R V++Q+S+H+EL T + Q AQ
Sbjct: 101 TAVTPQVRNTPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQDGSSPSSDPGVLELAPP 160
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
P+ +L + I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ +A A+
Sbjct: 161 PSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKL 220
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP G + +S G
Sbjct: 221 SLDGQNIYNSCCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPTGD-GDSANKDHSLLGTP 279
Query: 217 FPQMA--------NAAAIAAAFGGGLPP--------------GITGTNDRCTVLVSNLNS 254
+A +++ + GG + P ++G+ +L SNLN
Sbjct: 280 SGALASYSSGGSYSSSLSLSQGGGAISPLSAAAAAAAAAGRVALSGSGVSGVLLASNLNE 339
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
+ + LF LF +YG++ R+K+L NK D AL+Q+ DG QA+LA+ L G +FGK + V
Sbjct: 340 EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQLSDGNQAQLAMSHLNGQKVFGKVMRV 399
Query: 315 NFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SKH + +G D T ++ S L+RF + +KN++ P+ +HLS + + V
Sbjct: 400 TLSKHQTVALPREGLDDQLLTKDFAGSPLHRFKKPGSKNFQNIFPPSATLHLSNIREGVG 459
Query: 368 EEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRIS 425
EE++ G V K F+ +K AL+ + E+A +AL+ H +GG+ +++S
Sbjct: 460 EEDLRLLFSNSGGAVKAFKFFQ--DRKMALIQMSSVEEAIQALMDLHNYDMGGNHHLKVS 517
Query: 426 FSQ 428
FS+
Sbjct: 518 FSK 520
>gi|297275606|ref|XP_001092214.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 530
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 262/477 (54%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ S G+NIY+ CC L YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSQDGQNIYNACCTLRXXXXXXXXXXXXYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 351
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 411
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 412 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 470
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 471 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 527
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSNSAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 139
>gi|302820932|ref|XP_002992131.1| hypothetical protein SELMODRAFT_430388 [Selaginella moellendorffii]
gi|300140057|gb|EFJ06786.1| hypothetical protein SELMODRAFT_430388 [Selaginella moellendorffii]
Length = 695
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 247/428 (57%), Gaps = 15/428 (3%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPSKV+H RN+ I +L +L +PFG +T L + QALL+M++V A + ++
Sbjct: 46 EPSKVLHFRNLTPYIRRGELEKLVRPFGSVTSY-RLTTRTQALLEMKNVKQAKKVVDHFS 104
Query: 63 NVQPTIRGRNVYVQFSSHQEL-TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ + ++ VYV FS QEL + + A + +++L VT+ + +YPI V VLH+VF
Sbjct: 105 SAKALVKKTEVYVGFSRFQELEKDVSRLADPKQGASSKVLAVTVTNPIYPIDVYVLHRVF 164
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
PHG VEKI T + G IQ+ +A + L R+I+DGCC+++IQ++ EL
Sbjct: 165 CPHGSVEKI-TISRKLGICGYIQFDSVKTAAHVKDLLNDRHIFDGCCKMEIQYAKSQELG 223
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGT 241
V +N++ +RDF + ++P+ + PS G + P + A A A P I G
Sbjct: 224 VYFNDDNNRDFKDTSIPSRVRSDPSILGAPPVE-SVPALTAEDAAAGAPAVVPTPFI-GR 281
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
R V VSNLN +++DEDKLFNLFS YG I ++++++ L++M D FQAELA
Sbjct: 282 RKR-VVRVSNLNVEKVDEDKLFNLFSPYGKIRKVQVIKVT-GQGLIEMSDAFQAELASAC 339
Query: 302 LKGALLFGKRLE-VNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
LKGA +F K L+ V K N+ Q D Y +++ N F + +N C P+ I++
Sbjct: 340 LKGARVFEKELDTVVVDKELNLNQSRD---YTDAHDNIFFPSFVRN---CRGPSPTIYVW 393
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEM-NGKKQALVLFETEEQATEALVCKHASSLGG 419
LP VT+ E+++H HG I T++F GK +A V F+T+EQATEA+ CK S + G
Sbjct: 394 GLPSGVTDAELITHFSPHGEIAATEVFASEEGKPRARVRFDTKEQATEAVACKQYSVVNG 453
Query: 420 SIIRISFS 427
S IR++F+
Sbjct: 454 STIRLAFA 461
>gi|363744882|ref|XP_424912.3| PREDICTED: regulator of differentiation 1 [Gallus gallus]
Length = 552
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 254/480 (52%), Gaps = 60/480 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +E D++ L PFG +T +++LR K+QA L+M +A++ + + +
Sbjct: 75 PSRVLHLRQIPDNATEADVISLGLPFGKVTNVLILRGKSQAFLEMASEENAVSMVNYCST 134
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------GDEP 97
P I + VYVQ+S+H+EL T +Q G P
Sbjct: 135 AIPHIHNQPVYVQYSNHRELKTDSLPSQASAQAALQVVNTVQCGNVGVTSTFAAESGLPP 194
Query: 98 --NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +L + I ++ YP+++EVL+Q+FS GFV KIVTF ++ FQALIQY +A A+
Sbjct: 195 GHSSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNAYYAK 254
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----SGYS 211
+L GRNIY+ CC L I FS L L+V YNNE+SRDFT +LPA P + +
Sbjct: 255 MALNGRNIYNACCTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPAADGQLPLDPAIIAAFG 314
Query: 212 EAGVA---------------FPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR 256
G+ FPQ A ++A+ PG+ G + +LVSNLN +
Sbjct: 315 SQGIIFQPYVGTGGIGPVTYFPQGAVTTSVASVRMSN--PGVPGNS---VLLVSNLNPEA 369
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
I LF LF YG+++R+K++ ++ALVQM D QA++A+ L G L+GK +
Sbjct: 370 ITPHGLFILFGAYGDVLRVKIMFKNKENALVQMADATQAQIAISNLNGQKLYGKFIRATL 429
Query: 317 SKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH NI +G + T +Y NS L+RF +KN++ P+ +HLS +P V+ +
Sbjct: 430 SKHQNIQLPREGEEDNGLTKDYSNSPLHRFKNPGSKNFQNIFPPSATLHLSNIPPSVSFD 489
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ S GS V F K AL+ + E+A AL+ H LG +R+SFS+
Sbjct: 490 DLKSLFARTGSTVKAFRFFQRDCKMALIQLGSVEEAVHALIELHNYDLGENHHLRVSFSK 549
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R C P++++HL +P + TE +++S G + N + + GK QA + +EE
Sbjct: 67 KGGRLPCLPSRVLHLRQIPDNATEADVISLGLPFGKVTNVLI--LRGKSQAFLEMASEEN 124
Query: 405 A 405
A
Sbjct: 125 A 125
>gi|85003003|gb|ABC68595.1| polypyrimidine tract binding protein [Paracentrotus lividus]
Length = 618
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 174/514 (33%), Positives = 256/514 (49%), Gaps = 86/514 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 105 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 164
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR---------------------------- 93
T++ + GR +Y QFS H+EL T + Q +
Sbjct: 165 THMPRNVHGRQIYCQFSKHKELKTDFAHTQQQIASQVALQAAQQHPMLQQHLMQQPQHHH 224
Query: 94 -------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQ 140
G N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQ
Sbjct: 225 HQQHAAHPKVPDTGGGVNTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQ 284
Query: 141 ALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT------- 193
AL+Q+ A VA+ L G+NIY+ CCQL I FS L L V YNNE+SRD+T
Sbjct: 285 ALVQFADASQAAVAKLELDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTCDLPQGD 344
Query: 194 -----NPN----------------------LPAEQKGRPSQSGYSEAGV-AFPQMANAAA 225
+P+ LP S +GY AGV FP +A
Sbjct: 345 GLTGVDPSTAAMLGLGSAAGLISPYTAGHGLPFAGTTPVSLAGYHHAGVPGFPAGLSALP 404
Query: 226 IAAAFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 284
AAA G+ PG+ + +LVSNL + + LF LF +YG++ R+K+L K D+
Sbjct: 405 HAAAAAQGMRLPGMYMQSGTAVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDN 464
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLN 337
AL+QM D QA+LA+ L G L+GK++ V SKH + T ++ S L+
Sbjct: 465 ALIQMSDPNQAQLAMKHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDAGLTKDFSTSPLH 524
Query: 338 RFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALV 397
RF + +KN+ P+ +HLS +P V E+ + +HG++ N K F + +K AL+
Sbjct: 525 RFKKPGSKNFLNIYPPSSTLHLSNIPPTVDEDTLKEAFSQHGTVANFKFFPKD-RKMALL 583
Query: 398 LFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
+ E+A AL+ H L S +R+SFS+ Q
Sbjct: 584 QMGSVEEAIHALIAMHNYQLAESNHLRVSFSKAQ 617
>gi|297275604|ref|XP_002801040.1| PREDICTED: polypyrimidine tract-binding protein 1 [Macaca mulatta]
Length = 549
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/497 (34%), Positives = 258/497 (51%), Gaps = 78/497 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ S G+NIY+ CC L YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSQDGQNIYNACCTLRXXXXXXXXXXXXYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAA-----AIAAAFGGGLP--------------------------PGITG 240
A A P A A AI A G +P PG+ G
Sbjct: 293 AAAFASP-YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 351
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+
Sbjct: 352 AGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 410
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 411 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFP 469
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +AL+
Sbjct: 470 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 529
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 530 HNHDLGENHHLRVSFSK 546
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSNSAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 139
>gi|195391604|ref|XP_002054450.1| GJ22800 [Drosophila virilis]
gi|194152536|gb|EDW67970.1| GJ22800 [Drosophila virilis]
Length = 818
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 182/545 (33%), Positives = 259/545 (47%), Gaps = 119/545 (21%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 273 IAKASKVIHLRNIPNESGESDVVALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 332
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT---------------------------------ME 87
YT P +RGR VYVQFS+H+EL T
Sbjct: 333 YTVNPPQMRGRMVYVQFSNHRELKTDQSHNNSSVVQSDYRIQSPAGGSPLPLCAGGNVTS 392
Query: 88 QNAQGRGDE-----------------------------PNRILLVTIHHMLYPITVEVLH 118
NA GD PN +L V + ++YP+++++LH
Sbjct: 393 NNANSSGDSNCSTVAILQNNTSAVNASAAGNNTNAAGGPNTVLRVIVETLMYPVSLDILH 452
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178
Q+F G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L
Sbjct: 453 QIFQRFGKVLKIVTFTKNNSFQALIQYPDAHSAQQAKSILDGQNIYNGCCTLRIDNSKLT 512
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKG-----------------------RPSQSG------ 209
L V YNN++SRDFTNP LP + G RPS +G
Sbjct: 513 ALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNTNDLLLIAARQRPSLTGDKIVNG 572
Query: 210 YSEAGVAFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSN 251
GV P + N AA + A G L P + G ++ +LVSN
Sbjct: 573 LGAPGVLPPFALGLGAPLTGGYSNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSN 630
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
LN + + D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK
Sbjct: 631 LNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKP 690
Query: 312 LEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 364
+ V SKH + T +Y + L+RF + +KNY+ P+ +HLS +P
Sbjct: 691 IRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPS 750
Query: 365 DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IR 423
TE++I + V F +K AL+ + E+A AL+ H L S +R
Sbjct: 751 SCTEDDIKEAFSSNNFEVKAFKFFPKDRKMALLQLSSVEEAVLALIKMHNHQLSESNHLR 810
Query: 424 ISFSQ 428
+SFS+
Sbjct: 811 VSFSK 815
>gi|198434994|ref|XP_002131704.1| PREDICTED: similar to polypyrimidine tract binding protein-like
isoform 2 [Ciona intestinalis]
Length = 495
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 173/457 (37%), Positives = 257/457 (56%), Gaps = 36/457 (7%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+R++ ++SE +++QL FG +T L+ML+ KNQA L+M++ A +
Sbjct: 43 SKVIHIRSLPSDVSEQEVIQLGLSFGKVTNLLMLKGKNQAFLEMENSEVAREMVNECAIS 102
Query: 65 QPTIRGRNVYVQFSSHQELTT---------------MEQNAQGRGDEPNRILLVTIHHML 109
PTIR R +YVQ+S+H+EL T M+Q G PN +L V + +ML
Sbjct: 103 PPTIRQRVLYVQYSNHKELKTDSSPNQVKAQAVLQAMQQTEGG----PNHVLRVVVENML 158
Query: 110 YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQ 169
YPIT++VLH +F+ G V K +TF K+ FQAL+Q + A+ SL G+NIY+GCC
Sbjct: 159 YPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAIQSQTAKLSLDGQNIYNGCCT 218
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG-------RPSQSGYSEAGVA-FPQMA 221
L I++S L L V YNN++SRD+T +LP+ + S AG+ P
Sbjct: 219 LRIEYSKLPALNVKYNNDKSRDYTRNDLPSGESSILNNPPSSLQSILSSSAGLMPTPYSN 278
Query: 222 NAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK 281
NAAA AA GG ++ + VSNLN D I LF LF +YG++IR+K++ +
Sbjct: 279 NAAASIAAAFGGSTSSSMPSSGTSVLHVSNLNEDMISPQILFTLFGVYGDVIRVKIMFQR 338
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNS 334
+AL+QM D QA +A+ L G LFG L+V SKH + +G D T ++ NS
Sbjct: 339 KSNALIQMNDNTQAHVAMKHLHGVKLFGNSLQVVTSKHSQVQMPREGQDIGNLTQDFSNS 398
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KN++ P++++HLS +P DVTEE + G + K F + +K
Sbjct: 399 PLHRFKKPGSKNFQNIYPPSEVLHLSNIPNDVTEEFLKDSFAAFGKVHGFKFFAKD-RKM 457
Query: 395 ALVLFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
AL+ T E+A ++LV H L + +R+SFS+ Q
Sbjct: 458 ALIQMSTVEEAVKSLVMMHNFRLSDTNHLRVSFSKSQ 494
>gi|328712478|ref|XP_001947870.2| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Acyrthosiphon pisum]
Length = 613
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 170/524 (32%), Positives = 266/524 (50%), Gaps = 98/524 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +E++E +++ L PFG +T +++L+ KNQA L+M D SA + ++T
Sbjct: 79 KPSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADETSASAMVTYFT 138
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQ----------------GRGD---EPNRILLV 103
+RGR V++QFS+H+EL T + ++ G+ D PN +L V
Sbjct: 139 TCTAQLRGRAVFIQFSNHKELKTDQTHSNANASAQAALQAAQALAGQSDVQGGPNTVLRV 198
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
+ HM++PI+++VL+++FS +G V KIVTF K+ FQ LIQY +A A+ SL G+NI
Sbjct: 199 IVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDGQNI 258
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDF---TNPN------------------------ 196
Y CC+L I++S L L V YNN++SRD+ T PN
Sbjct: 259 YTSCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLPNGDNTVMETLAALGVDSVAGNQLLP 318
Query: 197 ---------LPAEQKGRP----------------------SQSGYSEAGVAFP---QMAN 222
+P+ G P + S + G+A P AN
Sbjct: 319 HQLSLLLSGVPSAAAGLPQARRQLTTGADHSRLAGSPGMLTPSFNAVHGLASPLATSYAN 378
Query: 223 AAAIAAAFGGGLPPGITG----------TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
+ + G LP G T C +LVSNLN + + D +F LF +YG++
Sbjct: 379 SPVTSMPLGFTLPGGSLAAGTLRLPGQMTGQTCVLLVSNLNEEMVTPDAIFTLFGVYGDV 438
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQG 325
+R+K+L NK D ALVQM + QA LA+ L L+GK + V SK+ +
Sbjct: 439 LRVKILYNKKDGALVQMAEPHQAHLAMLHLDKVRLYGKYIRVMQSKYQTVQLPKEGQPDS 498
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T +Y +S L+RF + +KNY+ P+ +HLS +P ++E+ + + E + V
Sbjct: 499 GLTKDYTSSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPTTLSEDFLKTAFENNTFTVKDF 558
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F +K AL+ E+ E+A AL+ H L + +R+SFS+
Sbjct: 559 KFFPKDRKMALIQMESLEEAVAALIKMHNYRLSEQNHLRVSFSK 602
>gi|147906715|ref|NP_001083815.1| polypyrimidine tract binding protein 1 [Xenopus laevis]
gi|6002571|gb|AAF00041.1|AF091370_1 hnRNP I-related RNA transport protein VgRBP60 [Xenopus laevis]
Length = 552
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 170/493 (34%), Positives = 255/493 (51%), Gaps = 73/493 (14%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIH+R + +++E +++ L PFG +T ++ML+ KNQA L+M +A + +YTNV
Sbjct: 61 SRVIHLRKLPGDVTEAEVISLGLPFGKVTNILMLKGKNQAFLEMSTEEAANTMISYYTNV 120
Query: 65 QPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQG 92
P +R + +Y+Q+S+H+EL T ++
Sbjct: 121 APVLRSQPIYIQYSNHKELKTDDSPNQARAQAALQAVNSVVSGTTALSASAAAVDVGIAM 180
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + + ++ YP+T++VL Q+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 181 SGQSP--VLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQ 238
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----S 208
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+PS +
Sbjct: 239 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-GQPSLDQTIA 297
Query: 209 GYSEAGVAFPQMANAAAIAAAFG-----GGLPP-----------------GITGTN--DR 244
+ G+ A AF GL P GI G
Sbjct: 298 AFGAPGLISANPYAGAGFHPAFAIPQGVHGLAPLTLPSAAAAAAAAAGRLGIHGLGIPGN 357
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
+LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G
Sbjct: 358 SVLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNG 417
Query: 305 ALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
L GK L SKH + QG T +Y S L+RF + +KN++ P+
Sbjct: 418 QRLHGKPLRTTVSKHQTVQLPREGQEDQGL-TKDYSTSPLHRFKKPGSKNFQNIFPPSAT 476
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
+HLS +P V+EE++ +G V F +K AL+ + E+A E+L+ H
Sbjct: 477 LHLSNIPPSVSEEDLKILFSNNGYAVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHD 536
Query: 417 LG-GSIIRISFSQ 428
+G R+SFS+
Sbjct: 537 MGENHHHRVSFSK 549
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 335 NLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
NL N N +K + R +++IHL LP DVTE E++S G + N + +
Sbjct: 38 NLYGSNGNDSKKFKGDGRSVAVGSRVIHLRKLPGDVTEAEVISLGLPFGKVTN--ILMLK 95
Query: 391 GKKQALVLFETEEQA 405
GK QA + TEE A
Sbjct: 96 GKNQAFLEMSTEEAA 110
>gi|328712476|ref|XP_003244820.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 581
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 170/524 (32%), Positives = 266/524 (50%), Gaps = 98/524 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +E++E +++ L PFG +T +++L+ KNQA L+M D SA + ++T
Sbjct: 47 KPSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADETSASAMVTYFT 106
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQ----------------GRGD---EPNRILLV 103
+RGR V++QFS+H+EL T + ++ G+ D PN +L V
Sbjct: 107 TCTAQLRGRAVFIQFSNHKELKTDQTHSNANASAQAALQAAQALAGQSDVQGGPNTVLRV 166
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
+ HM++PI+++VL+++FS +G V KIVTF K+ FQ LIQY +A A+ SL G+NI
Sbjct: 167 IVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDGQNI 226
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDF---TNPN------------------------ 196
Y CC+L I++S L L V YNN++SRD+ T PN
Sbjct: 227 YTSCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLPNGDNTVMETLAALGVDSVAGNQLLP 286
Query: 197 ---------LPAEQKGRP----------------------SQSGYSEAGVAFP---QMAN 222
+P+ G P + S + G+A P AN
Sbjct: 287 HQLSLLLSGVPSAAAGLPQARRQLTTGADHSRLAGSPGMLTPSFNAVHGLASPLATSYAN 346
Query: 223 AAAIAAAFGGGLPPGITG----------TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
+ + G LP G T C +LVSNLN + + D +F LF +YG++
Sbjct: 347 SPVTSMPLGFTLPGGSLAAGTLRLPGQMTGQTCVLLVSNLNEEMVTPDAIFTLFGVYGDV 406
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQG 325
+R+K+L NK D ALVQM + QA LA+ L L+GK + V SK+ +
Sbjct: 407 LRVKILYNKKDGALVQMAEPHQAHLAMLHLDKVRLYGKYIRVMQSKYQTVQLPKEGQPDS 466
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T +Y +S L+RF + +KNY+ P+ +HLS +P ++E+ + + E + V
Sbjct: 467 GLTKDYTSSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPTTLSEDFLKTAFENNTFTVKDF 526
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F +K AL+ E+ E+A AL+ H L + +R+SFS+
Sbjct: 527 KFFPKDRKMALIQMESLEEAVAALIKMHNYRLSEQNHLRVSFSK 570
>gi|26331660|dbj|BAC29560.1| unnamed protein product [Mus musculus]
gi|148699700|gb|EDL31647.1| mCG13402, isoform CRA_d [Mus musculus]
Length = 489
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 166/452 (36%), Positives = 252/452 (55%), Gaps = 56/452 (12%)
Query: 28 PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTT-- 85
PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T
Sbjct: 40 PFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 99
Query: 86 ------------------------------MEQNAQGRGDEPNRILLVTIHHMLYPITVE 115
++ G P +L + + ++ YP+T++
Sbjct: 100 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLD 157
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS
Sbjct: 158 VLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 217
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSGYSEAGVAFPQMANA--------AA 225
L L V YNN++SRD+T P+LP+ +PS Q+ + G++ P + A AA
Sbjct: 218 KLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAAAFGLSVPNVHGALAPLAIPSAA 276
Query: 226 IAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA 285
AAA PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++A
Sbjct: 277 AAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 335
Query: 286 LVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLN 337
LVQM DG QA+LA+ L G L GK + + SKH ++ QG T +Y +S L+
Sbjct: 336 LVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLH 394
Query: 338 RFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALV 397
RF + +KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+
Sbjct: 395 RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALI 454
Query: 398 LFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ E+A +AL+ H LG +R+SFS+
Sbjct: 455 QMGSVEEAVQALIELHNHDLGENHHLRVSFSK 486
>gi|149034648|gb|EDL89385.1| polypyrimidine tract binding protein 1, isoform CRA_b [Rattus
norvegicus]
Length = 490
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 253/453 (55%), Gaps = 57/453 (12%)
Query: 28 PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTT-- 85
PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T
Sbjct: 40 PFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 99
Query: 86 ------------------------------MEQNAQGRGDEPNRILLVTIHHMLYPITVE 115
++ G P +L + + ++ YP+T++
Sbjct: 100 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLD 157
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS
Sbjct: 158 VLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 217
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSGYSEAGVAFPQMANA---------A 224
L L V YNN++SRD+T P+LP+ +PS Q+ + G++ P + A A
Sbjct: 218 KLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAAAFGLSVPNVHGALAPLAIPSAA 276
Query: 225 AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 284
A AAA G PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++
Sbjct: 277 AAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN 335
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNL 336
ALVQM DG QA+LA+ L G L GK + + SKH ++ QG T +Y +S L
Sbjct: 336 ALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPL 394
Query: 337 NRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
+RF + +KN++ P+ +HLS +P V+E+++ S +G +V F +K AL
Sbjct: 395 HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 454
Query: 397 VLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ + E+A +AL+ H LG +R+SFS+
Sbjct: 455 IQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 487
>gi|148670261|gb|EDL02208.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a [Mus
musculus]
Length = 528
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 171/496 (34%), Positives = 256/496 (51%), Gaps = 98/496 (19%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 58 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 117
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 118 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 177
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 178 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 237
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 238 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 296
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + A+ A G G + PG +G
Sbjct: 297 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 356
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 357 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 416
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 417 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 475
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P+D +K AL+ + E+A +AL+ H
Sbjct: 476 SATLHLSNIPKD--------------------------RKMALIQLGSVEEAIQALIELH 509
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 510 NHDLGENHHLRVSFSK 525
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 41 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 94
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 95 GKSQAFLEMASEEAA 109
>gi|348531446|ref|XP_003453220.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oreochromis
niloticus]
Length = 523
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 262/483 (54%), Gaps = 59/483 (12%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+R + +E+SE +++ L PFG +T ++ML+ KNQA L++ +A+ + +Y
Sbjct: 41 SPPSRVLHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYY 100
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT---MEQNAQG---------RGDEPNR---------- 99
T V P +R V++Q+S+H+EL T + Q AQ G P+
Sbjct: 101 TAVTPQVRNTPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQDGSSPSSDPGVLDLTPP 160
Query: 100 ---ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+L + I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ +A A+
Sbjct: 161 PSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKL 220
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
SL G+NIY+ CC L I FS L + V YNN++SRD+T P+LP G + +S G
Sbjct: 221 SLDGQNIYNSCCTLRIDFSKLVNVNVKYNNDKSRDYTRPDLPTGD-GESTNKDHSLLGTP 279
Query: 217 FPQMA--------NAAAIAAAFGGGLPP--------------GITGTNDRCTVLVSNLNS 254
+A +++ + GG + P ++G+ +L SNLN
Sbjct: 280 SGALASYSSGGGYSSSLSLSQGGGAISPLSAAAAAAAAAGRVALSGSGVSGVLLASNLNE 339
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
+ + LF LF +YG++ R+K+L NK D AL+Q+ DG QA+LA+ L G +FGK + V
Sbjct: 340 EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQLSDGNQAQLAMSHLNGQKVFGKVMRV 399
Query: 315 NFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SKH + +G D T ++ S L+RF + +KN++ P+ +HLS + V
Sbjct: 400 TLSKHQTVALPREGLDDQLLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIRDGVG 459
Query: 368 EEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRIS 425
E+++ G V K F+ +K AL+ + E+ +AL+ H +GG+ +++S
Sbjct: 460 EDDLRLLFSNSGGTVKAFKFFQ--DRKMALIQMSSVEEGIQALMDLHNYDMGGNHHLKVS 517
Query: 426 FSQ 428
FS+
Sbjct: 518 FSK 520
>gi|198434992|ref|XP_002131695.1| PREDICTED: similar to polypyrimidine tract binding protein-like
isoform 1 [Ciona intestinalis]
Length = 528
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 169/490 (34%), Positives = 256/490 (52%), Gaps = 69/490 (14%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+R++ ++SE +++QL FG +T L+ML+ KNQA L+M++ A +
Sbjct: 43 SKVIHIRSLPSDVSEQEVIQLGLSFGKVTNLLMLKGKNQAFLEMENSEVAREMVNECAIS 102
Query: 65 QPTIRGRNVYVQFSSHQELTT---------------MEQNAQGRGDEPNRILLVTIHHML 109
PTIR R +YVQ+S+H+EL T M+Q G PN +L V + +ML
Sbjct: 103 PPTIRQRVLYVQYSNHKELKTDSSPNQVKAQAVLQAMQQTEGG----PNHVLRVVVENML 158
Query: 110 YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQ 169
YPIT++VLH +F+ G V K +TF K+ FQAL+Q + A+ SL G+NIY+GCC
Sbjct: 159 YPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAIQSQTAKLSLDGQNIYNGCCT 218
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG-------------------------- 203
L I++S L L V YNN++SRD+T +LP+ +
Sbjct: 219 LRIEYSKLPALNVKYNNDKSRDYTRNDLPSGESSILNNPPSSLQSILSSSAGLMPTPYSN 278
Query: 204 ----------RPSQSGYSEAGVAFPQMANAAAIAAAFGGGL-----PPGITGTNDRCTVL 248
+ SQ V+ N AA+AA + ++ +
Sbjct: 279 NAAASIAAALQQSQLNTLSNAVSSRSAINNAAVAAQLANLINSGGSTSSSMPSSGTSVLH 338
Query: 249 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF 308
VSNLN D I LF LF +YG++IR+K++ + +AL+QM D QA +A+ L G LF
Sbjct: 339 VSNLNEDMISPQILFTLFGVYGDVIRVKIMFQRKSNALIQMNDNTQAHVAMKHLHGVKLF 398
Query: 309 GKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLST 361
G L+V SKH + +G D T ++ NS L+RF + +KN++ P++++HLS
Sbjct: 399 GNSLQVVTSKHSQVQMPREGQDIGNLTQDFSNSPLHRFKKPGSKNFQNIYPPSEVLHLSN 458
Query: 362 LPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 421
+P DVTEE + G + K F + +K AL+ T E+A ++LV H L +
Sbjct: 459 IPNDVTEEFLKDSFAAFGKVHGFKFFAKD-RKMALIQMSTVEEAVKSLVMMHNFRLSDTN 517
Query: 422 -IRISFSQLQ 430
+R+SFS+ Q
Sbjct: 518 HLRVSFSKSQ 527
>gi|149037107|gb|EDL91638.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a
[Rattus norvegicus]
Length = 528
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 257/496 (51%), Gaps = 98/496 (19%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 58 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 117
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 118 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLL 177
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 178 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 237
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 238 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 296
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + +A+ A G G + PG +G
Sbjct: 297 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGI 356
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A++
Sbjct: 357 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNH 416
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 417 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 475
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P+D +K AL+ + E+A +AL+ H
Sbjct: 476 SATLHLSNIPKD--------------------------RKMALIQLGSVEEAIQALIELH 509
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 510 NHDLGENHHLRVSFSK 525
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 41 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 94
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 95 GKSQAFLEMASEEAA 109
>gi|131529|sp|P17225.2|PTBP1_MOUSE RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|53553|emb|CAA36321.1| 25kDa nuclear protein [Mus musculus]
Length = 527
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 261/474 (55%), Gaps = 54/474 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA--------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 351
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA--VHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK ++ALVQM DG QA+L + A V S+
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASEC 411
Query: 320 PNITQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
+G + T +Y +S L RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 412 AAAREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLF 470
Query: 376 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 471 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 524
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|349732190|ref|NP_001231826.1| polypyrimidine tract-binding protein 3 isoform 5 [Homo sapiens]
Length = 547
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 249/484 (51%), Gaps = 74/484 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 88 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 326
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 327 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 386
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 387 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 445
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFE--MNGKKQALVLFETEEQATEALV 410
+ +HLS +P VT +++ + E G V K F+ N Q ++L A +
Sbjct: 446 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQGLANSWAQVILLLPPPHSAGITGM 505
Query: 411 CKHA 414
HA
Sbjct: 506 SHHA 509
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 327 DTHEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N
Sbjct: 7 STGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN-- 59
Query: 386 LFEMNGKKQALVLFETEEQA 405
L + GK QA + +EE A
Sbjct: 60 LLMLKGKSQAFLEMASEEAA 79
>gi|25058871|gb|AAH39896.1| Similar to ROD1 regulator of differentiation 1 (S. pombe), partial
[Homo sapiens]
Length = 618
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 249/484 (51%), Gaps = 74/484 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 99 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 158
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 159 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 218
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 219 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 278
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 279 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 337
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 338 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 397
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 398 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 457
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 458 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 516
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFE--MNGKKQALVLFETEEQATEALV 410
+ +HLS +P VT +++ + E G V K F+ N Q ++L A +
Sbjct: 517 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQGLANSWAQVILLLPPPHSAGITGM 576
Query: 411 CKHA 414
HA
Sbjct: 577 SHHA 580
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 327 DTHEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N
Sbjct: 78 STGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN-- 130
Query: 386 LFEMNGKKQALVLFETEEQA 405
L + GK QA + +EE A
Sbjct: 131 LLMLKGKSQAFLEMASEEAA 150
>gi|426362704|ref|XP_004048495.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1
[Gorilla gorilla gorilla]
Length = 591
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 240/456 (52%), Gaps = 72/456 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 65 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 124
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 125 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 184
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 185 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 244
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 245 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 303
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 304 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 363
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 364 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 423
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 424 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 482
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFE 388
+ +HLS +P VT +++ + E G V K F+
Sbjct: 483 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQ 518
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 327 DTHEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N
Sbjct: 44 STGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN-- 96
Query: 386 LFEMNGKKQALVLFETEEQA 405
L + GK QA + +EE A
Sbjct: 97 LLMLKGKSQAFLEMASEEAA 116
>gi|410043023|ref|XP_003951547.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
Length = 554
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 240/456 (52%), Gaps = 72/456 (15%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 87
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 88 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 147
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 148 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 207
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 208 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 266
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 267 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 326
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 327 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 386
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 387 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 445
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFE 388
+ +HLS +P VT +++ + E G V K F+
Sbjct: 446 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQ 481
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 327 DTHEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N
Sbjct: 7 STGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN-- 59
Query: 386 LFEMNGKKQALVLFETEEQA 405
L + GK QA + +EE A
Sbjct: 60 LLMLKGKSQAFLEMASEEAA 79
>gi|410949959|ref|XP_003981684.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Felis catus]
Length = 508
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/442 (34%), Positives = 231/442 (52%), Gaps = 88/442 (19%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD 409
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
G QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 410 GSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 468
Query: 344 AKNYRYCCSPTKMIHLSTLPQD 365
+KN++ P+ +HLS +P +
Sbjct: 469 SKNFQNIFPPSATLHLSNIPHN 490
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|357623431|gb|EHJ74585.1| putative polypyrimidine tract binding protein [Danaus plexippus]
Length = 621
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 175/550 (31%), Positives = 253/550 (46%), Gaps = 126/550 (22%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQA------------------ 44
+PS+VIH+RN+ +E +E +++QL PFG +T +++L+ KNQA
Sbjct: 71 KPSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKGKNQACAGVFCTPVGHVKMPKAG 130
Query: 45 ----------------LLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTME- 87
L+M + SA+ + ++ +RGR VYVQFS+H+EL T +
Sbjct: 131 FCGGELRAHRIRCTQAFLEMAEEISAVAMVAYFGGCVAQLRGRAVYVQFSNHKELKTDQT 190
Query: 88 ----------------------------------QNAQGRGDE--------PNRILLVTI 105
Q A G G E PN +L V I
Sbjct: 191 HSNASASAQAALQAAQAISNSAGAALVAGAGAALQPANG-GTEIQCDLQGGPNTVLRVII 249
Query: 106 HHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD 165
HMLYPI ++VL+ +F +G V KIVTF K+ FQALIQY SA +A+++L G+NIY+
Sbjct: 250 EHMLYPIVLDVLYSIFQRYGKVLKIVTFTKNNSFQALIQYPDTGSAQMAKTALDGQNIYN 309
Query: 166 GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ------------------------ 201
GCC L I +S + L V YNN++SRD+TNP LP+
Sbjct: 310 GCCTLRIDYSKMTCLNVKYNNDKSRDYTNPTLPSGDGDAHQLLTSELMPLRAHLALNLAS 369
Query: 202 ---------------KGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCT 246
G S G GV+ P A A+ A
Sbjct: 370 RMSGGVLAPPFLGLGSGLASPYGVGVGGVSLPAFG-ALALTPASPALRALAAPPLPLATV 428
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ +
Sbjct: 429 LLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLAMTHMDKLR 488
Query: 307 LFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+FGK + V SKH + T +Y S L+RF + +KNY+ P+ +HL
Sbjct: 489 VFGKAMRVMLSKHQTVQLPKEGQPDAGLTRDYSQSPLHRFKKPGSKNYQNIYPPSATLHL 548
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
S +P VTE++I + G + F +K ALV + A AL+ H L
Sbjct: 549 SNIPATVTEDDIKEAFTKRGFTIKAFKFFPKDRKMALVQLPCIDDAVAALIKMHNHQLSE 608
Query: 420 S-IIRISFSQ 428
S +R+SFS+
Sbjct: 609 SNHLRVSFSK 618
>gi|386766855|ref|NP_001247398.1| hephaestus, isoform W [Drosophila melanogaster]
gi|383293057|gb|AFH06715.1| hephaestus, isoform W [Drosophila melanogaster]
Length = 799
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 256/531 (48%), Gaps = 109/531 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + + YT
Sbjct: 268 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVT 327
Query: 65 QPTIRGRNVYVQF---------------SSHQELT------------------------- 84
P +RGR VYVQF ++H + +
Sbjct: 328 PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANS 387
Query: 85 -------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVE 128
T NA G + PN +L V + ++YP+++++LHQ+F +G V
Sbjct: 388 SSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVL 447
Query: 129 KIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNER 188
KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V YNN++
Sbjct: 448 KIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDK 507
Query: 189 SRDFTNPNLPAEQKG-----------------------RPSQS--GYSEAGVAFP----- 218
SRDFTNP LP + G RPS S G GV P
Sbjct: 508 SRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSVNGLGAPGVLPPFALGL 567
Query: 219 ----------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRIDEDKLFNL 265
+ N AA + A G L P + G ++ +LVSNLN + + D LF L
Sbjct: 568 GTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMVTPDALFTL 625
Query: 266 FSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--- 322
F +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V SKH +
Sbjct: 626 FGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLP 685
Query: 323 ----TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH 378
T +Y + L+RF + +KNY+ P+ +HLS +P +E++I +
Sbjct: 686 KEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSN 745
Query: 379 GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 746 SFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 796
>gi|386766857|ref|NP_001247399.1| hephaestus, isoform Y [Drosophila melanogaster]
gi|383293058|gb|AFH06716.1| hephaestus, isoform Y [Drosophila melanogaster]
Length = 898
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 256/531 (48%), Gaps = 109/531 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + + YT
Sbjct: 367 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVT 426
Query: 65 QPTIRGRNVYVQF---------------SSHQELT------------------------- 84
P +RGR VYVQF ++H + +
Sbjct: 427 PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANS 486
Query: 85 -------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVE 128
T NA G + PN +L V + ++YP+++++LHQ+F +G V
Sbjct: 487 SSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVL 546
Query: 129 KIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNER 188
KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V YNN++
Sbjct: 547 KIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDK 606
Query: 189 SRDFTNPNLPAEQKG-----------------------RPSQS--GYSEAGVAFP----- 218
SRDFTNP LP + G RPS S G GV P
Sbjct: 607 SRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSVNGLGAPGVLPPFALGL 666
Query: 219 ----------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRIDEDKLFNL 265
+ N AA + A G L P + G ++ +LVSNLN + + D LF L
Sbjct: 667 GTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMVTPDALFTL 724
Query: 266 FSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--- 322
F +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V SKH +
Sbjct: 725 FGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLP 784
Query: 323 ----TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH 378
T +Y + L+RF + +KNY+ P+ +HLS +P +E++I +
Sbjct: 785 KEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSN 844
Query: 379 GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 845 SFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 895
>gi|426386366|ref|XP_004059656.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 559
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 164/508 (32%), Positives = 254/508 (50%), Gaps = 91/508 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIISASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L ++ +
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFSRGGGCVPSRAP 409
Query: 292 GFQ--AELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNR 341
G A A+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 410 GHTGAAPPAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKK 468
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+KN++ P+ +HLS +P V+EE++ +G +V F +K AL+ +
Sbjct: 469 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGS 528
Query: 402 EEQATEALVCKHASSLG-GSIIRISFSQ 428
E+A +AL+ H LG +R+SFS+
Sbjct: 529 VEEAVQALIDLHNHDLGENHHLRVSFSK 556
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|426386368|ref|XP_004059657.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 533
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 259/479 (54%), Gaps = 59/479 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ--AELAVHFLKGALLFGKRLEVNFSK 318
LF LF +YG++ R+K+L ++ + G A A+ L G L GK + + SK
Sbjct: 353 SLFILFGVYGDVQRVKILFSRGGGCVPSRAPGHTGAAPPAMSHLNGHKLHGKPIRITLSK 412
Query: 319 HPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
H N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE+
Sbjct: 413 HQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED 471
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ +G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 LKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 530
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|410978917|ref|XP_003995834.1| PREDICTED: polypyrimidine tract-binding protein 3 [Felis catus]
Length = 540
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 244/467 (52%), Gaps = 71/467 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 100 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 159
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
V P +R + V++Q+S+H+EL T + PN+ +FS
Sbjct: 160 VTPHLRSQPVFIQYSNHRELKT--------DNLPNQ-------------------AIFSK 192
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V
Sbjct: 193 FGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVK 252
Query: 184 YNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGVAFPQMANAAAIAAAFG------- 231
YNN++SRDFT +LP G+PS + + G+ A AA A A G
Sbjct: 253 YNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFHQATGI 311
Query: 232 ------GGLP---------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYG 270
G L PG +G +LV+NLN D I LF LF +YG
Sbjct: 312 SVPAVPGALGPLTITSSAVTGRMAIPGTSGVPGNSVLLVTNLNPDLITPHGLFILFGVYG 371
Query: 271 NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------- 322
++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH +
Sbjct: 372 DVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQE 431
Query: 323 TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
QG T ++ NS L+RF + +KN++ P+ +HLS +P VT +++ + E G V
Sbjct: 432 DQGL-TKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSV 490
Query: 383 NTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 491 KAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 537
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
T Y N N N+ K R CSP++++HL +P DVTE E++S G + N L
Sbjct: 79 TGVYANGNDNK----KFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LL 132
Query: 388 EMNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 133 MLKGKSQAFLEMASEEAA 150
>gi|28571965|ref|NP_788780.1| hephaestus, isoform H [Drosophila melanogaster]
gi|281362946|ref|NP_001163787.1| hephaestus, isoform O [Drosophila melanogaster]
gi|281362952|ref|NP_001163790.1| hephaestus, isoform R [Drosophila melanogaster]
gi|16303586|gb|AAL14775.1| hephaestus [Drosophila melanogaster]
gi|28381533|gb|AAO41627.1| hephaestus, isoform H [Drosophila melanogaster]
gi|157816746|gb|ABV82366.1| LD04329p [Drosophila melanogaster]
gi|272477264|gb|ACZ95080.1| hephaestus, isoform O [Drosophila melanogaster]
gi|272477267|gb|ACZ95083.1| hephaestus, isoform R [Drosophila melanogaster]
Length = 789
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/535 (33%), Positives = 256/535 (47%), Gaps = 113/535 (21%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + + YT
Sbjct: 254 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVT 313
Query: 65 QPTIRGRNVYVQF---------------SSHQELT------------------------- 84
P +RGR VYVQF ++H + +
Sbjct: 314 PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANS 373
Query: 85 -------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVE 128
T NA G + PN +L V + ++YP+++++LHQ+F +G V
Sbjct: 374 SSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVL 433
Query: 129 KIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNER 188
KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V YNN++
Sbjct: 434 KIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDK 493
Query: 189 SRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGVAFP- 218
SRDFTNP LP + G RPS S G GV P
Sbjct: 494 SRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVLPPF 553
Query: 219 --------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ N AA + A G L P + G ++ +LVSNLN + + D
Sbjct: 554 ALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMVTPDA 611
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V SKH
Sbjct: 612 LFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQA 671
Query: 322 I-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 374
+ T +Y + L+RF + +KNY+ P+ +HLS +P +E++I
Sbjct: 672 VQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEA 731
Query: 375 LEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
+ V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 732 FTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 786
>gi|17864284|ref|NP_524703.1| hephaestus, isoform C [Drosophila melanogaster]
gi|281362954|ref|NP_001163791.1| hephaestus, isoform S [Drosophila melanogaster]
gi|281362956|ref|NP_001163792.1| hephaestus, isoform T [Drosophila melanogaster]
gi|281362958|ref|NP_001163793.1| hephaestus, isoform U [Drosophila melanogaster]
gi|6665714|gb|AAF22979.1|AF211191_1 polypyrimidine tract binding protein [Drosophila melanogaster]
gi|23172814|gb|AAN14296.1| hephaestus, isoform C [Drosophila melanogaster]
gi|272477268|gb|ACZ95084.1| hephaestus, isoform S [Drosophila melanogaster]
gi|272477269|gb|ACZ95085.1| hephaestus, isoform T [Drosophila melanogaster]
gi|272477270|gb|ACZ95086.1| hephaestus, isoform U [Drosophila melanogaster]
Length = 581
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/539 (33%), Positives = 258/539 (47%), Gaps = 113/539 (20%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 42 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 101
Query: 61 YTNVQPTIRGRNVYVQF---------------SSHQELT--------------------- 84
YT P +RGR VYVQF ++H + +
Sbjct: 102 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 161
Query: 85 -----------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPH 124
T NA G + PN +L V + ++YP+++++LHQ+F +
Sbjct: 162 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 221
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V Y
Sbjct: 222 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKY 281
Query: 185 NNERSRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGV 215
NN++SRDFTNP LP + G RPS S G GV
Sbjct: 282 NNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGV 341
Query: 216 AFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRI 257
P + N AA + A G L P + G ++ +LVSNLN + +
Sbjct: 342 LPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMV 399
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V S
Sbjct: 400 TPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMAS 459
Query: 318 KHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + T +Y + L+RF + +KNY+ P+ +HLS +P +E++
Sbjct: 460 KHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDD 519
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
I + V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 520 IKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 578
>gi|161079544|ref|NP_001097993.1| hephaestus, isoform M [Drosophila melanogaster]
gi|16589094|gb|AAL27010.1|AF436844_1 hephaestus [Drosophila melanogaster]
gi|158030461|gb|ABW08817.1| hephaestus, isoform M [Drosophila melanogaster]
Length = 568
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/539 (33%), Positives = 258/539 (47%), Gaps = 113/539 (20%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 29 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 88
Query: 61 YTNVQPTIRGRNVYVQF---------------SSHQELT--------------------- 84
YT P +RGR VYVQF ++H + +
Sbjct: 89 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 148
Query: 85 -----------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPH 124
T NA G + PN +L V + ++YP+++++LHQ+F +
Sbjct: 149 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 208
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V Y
Sbjct: 209 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKY 268
Query: 185 NNERSRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGV 215
NN++SRDFTNP LP + G RPS S G GV
Sbjct: 269 NNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGV 328
Query: 216 AFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRI 257
P + N AA + A G L P + G ++ +LVSNLN + +
Sbjct: 329 LPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMV 386
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V S
Sbjct: 387 TPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMAS 446
Query: 318 KHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + T +Y + L+RF + +KNY+ P+ +HLS +P +E++
Sbjct: 447 KHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDD 506
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
I + V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 507 IKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 565
>gi|45552115|ref|NP_788776.2| hephaestus, isoform G [Drosophila melanogaster]
gi|45446737|gb|AAO41623.2| hephaestus, isoform G [Drosophila melanogaster]
Length = 615
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/539 (33%), Positives = 258/539 (47%), Gaps = 113/539 (20%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 76 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 135
Query: 61 YTNVQPTIRGRNVYVQF---------------SSHQELT--------------------- 84
YT P +RGR VYVQF ++H + +
Sbjct: 136 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 195
Query: 85 -----------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPH 124
T NA G + PN +L V + ++YP+++++LHQ+F +
Sbjct: 196 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 255
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V Y
Sbjct: 256 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKY 315
Query: 185 NNERSRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGV 215
NN++SRDFTNP LP + G RPS S G GV
Sbjct: 316 NNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGV 375
Query: 216 AFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRI 257
P + N AA + A G L P + G ++ +LVSNLN + +
Sbjct: 376 LPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMV 433
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V S
Sbjct: 434 TPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMAS 493
Query: 318 KHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + T +Y + L+RF + +KNY+ P+ +HLS +P +E++
Sbjct: 494 KHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDD 553
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
I + V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 554 IKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 612
>gi|161079541|ref|NP_001097992.1| hephaestus, isoform L [Drosophila melanogaster]
gi|158030460|gb|ABW08816.1| hephaestus, isoform L [Drosophila melanogaster]
Length = 622
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/539 (33%), Positives = 258/539 (47%), Gaps = 113/539 (20%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 83 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 142
Query: 61 YTNVQPTIRGRNVYVQF---------------SSHQELT--------------------- 84
YT P +RGR VYVQF ++H + +
Sbjct: 143 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 202
Query: 85 -----------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPH 124
T NA G + PN +L V + ++YP+++++LHQ+F +
Sbjct: 203 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 262
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V Y
Sbjct: 263 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKY 322
Query: 185 NNERSRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGV 215
NN++SRDFTNP LP + G RPS S G GV
Sbjct: 323 NNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGV 382
Query: 216 AFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRI 257
P + N AA + A G L P + G ++ +LVSNLN + +
Sbjct: 383 LPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMV 440
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V S
Sbjct: 441 TPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMAS 500
Query: 318 KHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + T +Y + L+RF + +KNY+ P+ +HLS +P +E++
Sbjct: 501 KHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDD 560
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
I + V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 561 IKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 619
>gi|24651780|ref|NP_733460.1| hephaestus, isoform B [Drosophila melanogaster]
gi|28571963|ref|NP_733461.2| hephaestus, isoform A [Drosophila melanogaster]
gi|28571967|ref|NP_788773.1| hephaestus, isoform D [Drosophila melanogaster]
gi|28571969|ref|NP_788774.1| hephaestus, isoform E [Drosophila melanogaster]
gi|28571971|ref|NP_788777.1| hephaestus, isoform I [Drosophila melanogaster]
gi|28571973|ref|NP_788778.1| hephaestus, isoform J [Drosophila melanogaster]
gi|28571975|ref|NP_788779.1| hephaestus, isoform K [Drosophila melanogaster]
gi|28571979|ref|NP_788775.1| hephaestus, isoform F [Drosophila melanogaster]
gi|161079548|ref|NP_001097994.1| hephaestus, isoform N [Drosophila melanogaster]
gi|281362948|ref|NP_001163788.1| hephaestus, isoform P [Drosophila melanogaster]
gi|281362960|ref|NP_001163794.1| hephaestus, isoform V [Drosophila melanogaster]
gi|18042167|gb|AAL57860.1|AF455053_1 hephaestus [Drosophila melanogaster]
gi|23172813|gb|AAF57208.2| hephaestus, isoform B [Drosophila melanogaster]
gi|28381525|gb|AAN14297.2| hephaestus, isoform A [Drosophila melanogaster]
gi|28381526|gb|AAO41620.1| hephaestus, isoform D [Drosophila melanogaster]
gi|28381527|gb|AAO41621.1| hephaestus, isoform E [Drosophila melanogaster]
gi|28381528|gb|AAO41622.1| hephaestus, isoform F [Drosophila melanogaster]
gi|28381530|gb|AAO41624.1| hephaestus, isoform I [Drosophila melanogaster]
gi|28381531|gb|AAO41625.1| hephaestus, isoform J [Drosophila melanogaster]
gi|28381532|gb|AAO41626.1| hephaestus, isoform K [Drosophila melanogaster]
gi|158030462|gb|ABW08818.1| hephaestus, isoform N [Drosophila melanogaster]
gi|189182140|gb|ACD81846.1| LD11808p [Drosophila melanogaster]
gi|272477265|gb|ACZ95081.1| hephaestus, isoform P [Drosophila melanogaster]
gi|272477271|gb|ACZ95087.1| hephaestus, isoform V [Drosophila melanogaster]
Length = 608
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 178/539 (33%), Positives = 258/539 (47%), Gaps = 113/539 (20%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 69 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 128
Query: 61 YTNVQPTIRGRNVYVQF---------------SSHQELT--------------------- 84
YT P +RGR VYVQF ++H + +
Sbjct: 129 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 188
Query: 85 -----------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPH 124
T NA G + PN +L V + ++YP+++++LHQ+F +
Sbjct: 189 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 248
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V Y
Sbjct: 249 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKY 308
Query: 185 NNERSRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGV 215
NN++SRDFTNP LP + G RPS S G GV
Sbjct: 309 NNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGV 368
Query: 216 AFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRI 257
P + N AA + A G L P + G ++ +LVSNLN + +
Sbjct: 369 LPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMV 426
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V S
Sbjct: 427 TPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMAS 486
Query: 318 KHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + T +Y + L+RF + +KNY+ P+ +HLS +P +E++
Sbjct: 487 KHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDD 546
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
I + V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 547 IKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSK 605
>gi|224089408|ref|XP_002188238.1| PREDICTED: polypyrimidine tract-binding protein 3 [Taeniopygia
guttata]
Length = 488
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 246/466 (52%), Gaps = 43/466 (9%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +E++ +++ L PFG +T L+MLR K QA L+M + +A++ + +Y
Sbjct: 23 SPSRVLHIRQIPNEVTGAEVVSLGLPFGKVTNLLMLRGKGQAFLEMASIDAAVSMVNYYA 82
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD----------EPNR------------- 99
P + + VY+Q+S ++EL T Q+ Q + + NR
Sbjct: 83 PATPHLHHQPVYIQYSKYKELRTDNQHNQAKPQPAPQCVNAVQQGNRDITSALAAECGVL 142
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + + ++ YP+T+++L+Q+FS GFV +I+ F K+ FQ+L+QY +A A
Sbjct: 143 PRHGSVLRIIVENVFYPVTLDILYQIFSKFGFVLRIIMFHKNNQFQSLLQYSDAMNAYYA 202
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ SL G IY GCC L I+FS L L V YNN++SRDFT +LP R ++
Sbjct: 203 KMSLDGHCIYTGCCTLRIEFSKLANLTVKYNNDKSRDFTRIDLPFGDGQRTVETSIPFGP 262
Query: 215 VAFPQMANAAAI----AAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYG 270
P + +AA G P I G + +LVSNLN + I LF LF +YG
Sbjct: 263 SVLPVPGALGPLMVTTSAAPGHMTIPDIPGNS---VLLVSNLNPEAITPYGLFILFGVYG 319
Query: 271 NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD 327
++ R+K++ K ALVQM D QA+LA+++L G L+G+ + SK+ I +G +
Sbjct: 320 DVHRVKIMFKKRGIALVQMADATQAQLAINYLNGQRLYGRVMHATLSKYQTIQLPREGQE 379
Query: 328 ----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN 383
T +Y NS L+RF +KN++ P+ +HLS +P T +++ + GS V
Sbjct: 380 DKGLTKDYSNSPLHRFKNPCSKNFQNIFPPSATLHLSNIPSSATVDDLKNLFTSKGSTVK 439
Query: 384 TKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F K AL+ + E+A AL+ H G +R+SFS+
Sbjct: 440 GFKFFQKDCKMALIQLGSVEEAVHALIELHNHDFGENQHLRVSFSK 485
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 341 RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFE 400
+ +K R CSP++++H+ +P +VT E+VS G + N L + GK QA +
Sbjct: 12 KKKSKGKRLPCSPSRVLHIRQIPNEVTGAEVVSLGLPFGKVTN--LLMLRGKGQAFLEMA 69
Query: 401 TEEQATEALVCKHASS---LGGSIIRISFSQLQSIRENSQ 437
+ + A ++V +A + L + I +S+ + +R ++Q
Sbjct: 70 SIDAAV-SMVNYYAPATPHLHHQPVYIQYSKYKELRTDNQ 108
>gi|426386370|ref|XP_004059658.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 552
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 166/501 (33%), Positives = 257/501 (51%), Gaps = 84/501 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----- 206
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 207 QSGYSE--AGVAFPQMANAAAIAAAFGGGLP--------------------------PGI 238
+ ++ AG FP AI A G +P PG+
Sbjct: 294 AAAFASPYAGAGFPP---TFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGL 350
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ--AE 296
G + +LVSNLN +R+ LF LF +YG++ R+K+L ++ + G A
Sbjct: 351 AGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFSRGGGCVPSRAPGHTGAAP 409
Query: 297 LAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYR 348
A+ L G L GK + + SKH N+ QG T +Y NS L+RF + +KN++
Sbjct: 410 PAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQ 468
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +A
Sbjct: 469 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQA 528
Query: 409 LVCKHASSLG-GSIIRISFSQ 428
L+ H LG +R+SFS+
Sbjct: 529 LIDLHNHDLGENHHLRVSFSK 549
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|281345981|gb|EFB21565.1| hypothetical protein PANDA_015565 [Ailuropoda melanoleuca]
Length = 444
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 226/430 (52%), Gaps = 71/430 (16%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 17 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 76
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + V++Q+S+H+EL T N G PN
Sbjct: 77 PVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLALPGAPPNEGTVL 136
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 137 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGAVLKIITFTKNNQFQALLQYADPVNAHYA 196
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 197 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 255
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG G
Sbjct: 256 FGAPGIISSPYAGAAGFAPAIGFHQATGLSVPAVPGALGPLTITSSAVTGRMAVPGAGGM 315
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 316 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 375
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 376 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 434
Query: 354 TKMIHLSTLP 363
+ +HLS +P
Sbjct: 435 SATLHLSNIP 444
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 10 KGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 67
Query: 405 A 405
A
Sbjct: 68 A 68
>gi|119579506|gb|EAW59102.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_c [Homo
sapiens]
Length = 482
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 162/468 (34%), Positives = 246/468 (52%), Gaps = 58/468 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ T
Sbjct: 28 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAV------T 81
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
++ ++ + E T + G P +L + I ++ YP+T+EVLHQ+FS
Sbjct: 82 MAVSAVQSGSLALSGGPSNEGTVLP------GQSP--VLRIIIENLFYPVTLEVLHQIFS 133
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V
Sbjct: 134 KFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNV 193
Query: 183 NYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGVAFPQMANAAAIAAAFG------ 231
YNN++SRDFT +LP G+PS + + G+ A AA A A G
Sbjct: 194 KYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATG 252
Query: 232 -------GGLP---------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY 269
G L PG +G +LV+NLN D I LF LF +Y
Sbjct: 253 LSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVY 312
Query: 270 GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI------- 322
G++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH +
Sbjct: 313 GDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQ 372
Query: 323 -TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI 381
QG T ++ NS L+RF + +KN++ P+ +HLS +P VT +++ + E G
Sbjct: 373 EDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCS 431
Query: 382 VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 432 VKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 479
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 328 THEYMNSN-LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T Y N N +F R+ R CSP++++HL +P DVTE EI+S G + N L
Sbjct: 8 TGVYANGNDSKKFKRD-----RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--L 60
Query: 387 FEMNGKKQALVLFETEEQA-TEALVCKHASSL 417
+ GK QA + +EE A T A+ + SL
Sbjct: 61 LMLKGKSQAFLEMASEEAAVTMAVSAVQSGSL 92
>gi|395824362|ref|XP_003785435.1| PREDICTED: polypyrimidine tract-binding protein 3 [Otolemur
garnettii]
Length = 534
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 252/497 (50%), Gaps = 83/497 (16%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+Q T
Sbjct: 47 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQXXXXXXXX---------XT 97
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------MEQNAQGRGDEP------------ 97
V P +R + VY+Q+S+H+EL T +A G P
Sbjct: 98 PVTPQLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGGLPLPGASSNEGTVL 157
Query: 98 ---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+ +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 158 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 217
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 218 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 276
Query: 207 -------QSGYSEAG-----VAFPQMANAAAIAAAFGGGLP--------------PGITG 240
S Y+ A + FPQ A ++ A G P PG G
Sbjct: 277 FGAPGIISSPYAGAAGFAPTIGFPQ-ATGLSVPAVPGALGPLAITSSAVTGRMAIPGTGG 335
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 336 IPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMN 395
Query: 301 FLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 396 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFP 454
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P VT +++ S + G V F +K AL+ + E+A +AL+
Sbjct: 455 PSATLHLSNIPPSVTVDDLKSLFIDAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 514
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 515 HNHDLGENHHLRVSFSK 531
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
T Y N N N+ K R CSP++++HL +P DVTE E++S G + N L
Sbjct: 27 TGVYANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LL 80
Query: 388 EMNGKKQ 394
+ GK Q
Sbjct: 81 MLKGKSQ 87
>gi|431922192|gb|ELK19283.1| Polypyrimidine tract-binding protein 1 [Pteropus alecto]
Length = 566
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 173/506 (34%), Positives = 265/506 (52%), Gaps = 86/506 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +I+E +++ L PFG +T L+ML+ K+QA ++M +A + +YT+
Sbjct: 63 PSRVIHIRKLPSDITEGEVISLGLPFGKVTNLLMLKGKSQAFIEMNTEEAANTMVNYYTS 122
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +YVQFS+H+EL T ++
Sbjct: 123 VTPVLRGQPIYVQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 182
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 183 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSA 240
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 241 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 299
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +
Sbjct: 300 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLGGAGN-SVLLVSNLNPEVRGFA 358
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL----------------------- 297
+ F +YG++ R+K+L NK ++ALVQM DG QA+L
Sbjct: 359 RRFPPRRVYGDVQRVKILFNKKENALVQMADGSQAQLGKGPGRAGVGGAAAGTLGPRVTR 418
Query: 298 ------AVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
A+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 419 VPLAFAAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 477
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P ++E+++ +G IV F +K AL+ + E
Sbjct: 478 SKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVE 537
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 538 EAIQALIDLHNHDLGENHHLRVSFSK 563
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP D+TE E++S G + N L + GK QA
Sbjct: 46 NGNDSKKFKGDSRSAGVPSRVIHIRKLPSDITEGEVISLGLPFGKVTN--LLMLKGKSQA 103
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I + FS + ++ +S
Sbjct: 104 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYVQFSNHKELKTDS 146
>gi|290993108|ref|XP_002679175.1| predicted protein [Naegleria gruberi]
gi|284092791|gb|EFC46431.1| predicted protein [Naegleria gruberi]
Length = 482
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 252/478 (52%), Gaps = 58/478 (12%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKVIH R + + ++NDL+ + QPFG +T +++L+ Q L+Q +V AI+ ++ +
Sbjct: 17 TTPSKVIHFRRIPIDTTQNDLMNMCQPFGTVTNILLLK-NGQGLVQFAEVDGAISLIESF 75
Query: 62 TNVQPT----IRGRNVYVQFSSHQELT----TMEQNA---QGRGDEPNRILLVTIHH-ML 109
N + IR VY +SSH EL+ + N G+ +PN ILLVTI
Sbjct: 76 NNNPDSPSFVIRDTKVYPNYSSHTELSKGLISKSDNGLANNGKQQDPNHILLVTISKSKS 135
Query: 110 YPITVEVLHQVFSPHGF--VEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
+ ++ LH++FS G +EKIV F K+AG QALIQY+ A+ AR LQG +
Sbjct: 136 TDVNIDSLHEIFSLKGSCSIEKIVMFNKTAGLQALIQYKNVNDALEARKKLQGETPFSTS 195
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIA 227
L IQFSNL +L V+ N++++RD+T +P Q S +
Sbjct: 196 ENLLIQFSNLKDLTVHQNSDKARDYT----------KPPQQPQSSVSSPTTTNTTNSTNT 245
Query: 228 AAFGGGLPPGITGTNDRCT------VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK 281
A LP TN+ T +LVSN N +++ D LFNLFS YG I RIK+ + K
Sbjct: 246 VAVSSTLP----STNNAPTTVMKRILLVSNFNDKKMNCDLLFNLFSCYGYIHRIKIFKTK 301
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-TQGADTH--EYMNSNLNR 338
PDHALVQM QA A+ LKG +FGK L VNFSKH I T +D + ++ +NLNR
Sbjct: 302 PDHALVQMASHKQALNAISSLKGVQIFGKTLSVNFSKHTFINTNKSDNNMKDFTKTNLNR 361
Query: 339 FNRNAAK-----------------NYRYCCSPTKMIHLSTLP--QDVTEEEIVSHL-EEH 378
F R A+ N Y C PT +H+S +P +D +EI++++ +
Sbjct: 362 FPRGASTSQTSPSSNNSLTNGKQHNKLYMCQPTHTLHISNVPFEKDEKGKEILTNIFSQF 421
Query: 379 GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRENS 436
G I ++F N K AL+ F+T A EAL H ++ G ++++FS I +N+
Sbjct: 422 GEIEGLRVFRHNDKPMALIKFKTITSAAEALATLHNETISGKHMKVAFSLNSVIPQNN 479
>gi|302790736|ref|XP_002977135.1| hypothetical protein SELMODRAFT_443468 [Selaginella moellendorffii]
gi|300155111|gb|EFJ21744.1| hypothetical protein SELMODRAFT_443468 [Selaginella moellendorffii]
Length = 466
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 239/415 (57%), Gaps = 15/415 (3%)
Query: 16 EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75
E S+ +L +L +PFG +T L + QALL+M++V A + +++ + ++ +YV
Sbjct: 46 EPSKGELEKLVRPFGSVTSY-RLTTRTQALLEMKNVKQAKKVVDHFSSEKARVKKAEIYV 104
Query: 76 QFSSHQEL-TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ 134
FS QEL + + A + +++L VT+ + +YPI V VLH+VFSPHG VEKI T
Sbjct: 105 GFSRFQELEKDVSRLADPKQGPSSKVLAVTVTNPIYPIDVYVLHRVFSPHGSVEKI-TIS 163
Query: 135 KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTN 194
+ G IQ+ +A + L R+I+DGCC+++IQ++ EL V +N++ +RDF +
Sbjct: 164 RKLGICGYIQFDSVKTAAHVKDLLNDRHIFDGCCKMEIQYAKSQELGVYFNDDNNRDFKD 223
Query: 195 PNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS 254
++P+ + PS G + P + A A A P I G R V VSNLN
Sbjct: 224 TSIPSRVRSDPSILGAPPVE-SVPALTAEDAAAGAPAVVPTPFI-GRRKR-VVRVSNLNV 280
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE- 313
+++DEDKLFNLFS YG I ++++++ L++M D FQAELA LKGA +F K L+
Sbjct: 281 EKVDEDKLFNLFSPYGKIRKVQVIKVT-GQGLIEMSDAFQAELASACLKGARVFEKELDT 339
Query: 314 VNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
V K N+ Q D Y +++ N F + +N C P+ I++ LP VT+ E+++
Sbjct: 340 VVVDKELNLNQSRD---YTDAHDNIFFPSFVRN---CRGPSPTIYVWGLPSGVTDAELIT 393
Query: 374 HLEEHGSIVNTKLF-EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427
H HG I T++F GK +A V F T+EQATEA+ CK S + GS IR++F+
Sbjct: 394 HFSPHGEIAATEVFASEEGKPRARVRFATKEQATEAVACKQYSVVNGSTIRLAFA 448
>gi|320170468|gb|EFW47367.1| polypyrimidine tract-binding protein PTB-2 [Capsaspora owczarzaki
ATCC 30864]
Length = 546
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 165/482 (34%), Positives = 255/482 (52%), Gaps = 55/482 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E KV+HVRN+ +++E +L+ + +G + ++L K Q ++M+ + +A N L
Sbjct: 66 ELGKVLHVRNMPLDVTEPELIAIGAKYGPVANTLLLHNKGQGFIEMEQLDAAKNLLAASE 125
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD------------EPNRILLVTIHHMLY 110
IRGR VY Q S+H +L EQ+ G EP +L V IH++LY
Sbjct: 126 ANPQFIRGRRVYFQPSNHVQLKRNEQHHGGAAASGSHSGNNDSSFEPKPVLRVEIHNVLY 185
Query: 111 PITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQL 170
+T++VLHQ+FS G V +I+TF K+ FQA IQY SA A+SSL G++IY GCCQL
Sbjct: 186 VVTLDVLHQIFSKFGNVLRIITFNKNNLFQAFIQYADLNSAKNAKSSLDGQSIYTGCCQL 245
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIA--- 227
I +S LDEL V +NN++ RD+TNPNLP P + + AG A ++ N A
Sbjct: 246 RIFYSRLDELNVRFNNDKCRDYTNPNLPTGDN-TPFGAAANTAGAAGGRIGNYGGNAYGG 304
Query: 228 -------------AAFGGGLPPGITGTND---------------RCTVLVSNLNSDRIDE 259
A + G G+ G N+ R +LVSNLN +
Sbjct: 305 YQAGAQQGGYGGPAGYSAGPAAGVFGGNNAVNAGAYGAAAGNNARNIILVSNLNDQHVTP 364
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D LF + Y ++ R+K+L NK D ALVQ+ D QA+ A+H L +GK + ++ SKH
Sbjct: 365 DILFMIIGTYADVHRVKILYNKKDTALVQVTDSQQAQTAIHNLNMQTFYGKEMRLSLSKH 424
Query: 320 PNIT---QGAD------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
+ G++ T EY+NS L+RF +KN+ C P +H+S +P + E +
Sbjct: 425 NAVALPRSGSEESAFELTKEYINSPLHRFKVPNSKNFANICPPIDTLHVSNIPDNYPEAD 484
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQL 429
+V+ ++ +V +LF N K +V F + ++A +ALV + +G + +R+SFS++
Sbjct: 485 LVAEFGKYAPVVLFRLFP-NNHKMGVVKFGSTDEAMQALVHMNNFKIGPTNYLRVSFSKV 543
Query: 430 QS 431
+
Sbjct: 544 SA 545
>gi|196010463|ref|XP_002115096.1| hypothetical protein TRIADDRAFT_28601 [Trichoplax adhaerens]
gi|190582479|gb|EDV22552.1| hypothetical protein TRIADDRAFT_28601, partial [Trichoplax
adhaerens]
Length = 476
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 247/473 (52%), Gaps = 49/473 (10%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIH+RN+ + S+ ++ L PFG +T ++ L AKNQ L+++D + +Y V
Sbjct: 1 SRVIHIRNIPTDSSDVEIAALGVPFGKVTNILRLNAKNQCFLELEDENKTRKMMNYYKYV 60
Query: 65 QPTIRGRNVYVQFSSHQELTT-------------------------MEQN----AQGRGD 95
P +RG VY+Q+S+H +L T ++ N
Sbjct: 61 APNLRGHPVYMQYSNHTQLVTDSSRSKIAAISSSSPPLNPLDSEVSLKSNELMTVGSASP 120
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
E R+L ++I +++YP+T+++L+Q+FS G VEKI+TF K+ +QALIQ+ A A+
Sbjct: 121 EAGRVLHISIDNLVYPVTLDILNQIFSKFGVVEKIITFTKNNLYQALIQFTDAVDAQNAK 180
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT-------NPNLPAEQKGRPSQ- 207
SL G++IY GCC L I +S L + V YNN++SRDFT NP A P
Sbjct: 181 LSLDGQSIYYGCCTLKIDYSKLLSINVKYNNDKSRDFTKNVTTRINPTAGATSIAIPVAT 240
Query: 208 --SGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDR----CTVLVSNLNSDRIDEDK 261
S + P + + + A L G G ++ + V+NLN ++
Sbjct: 241 ILSPLTAIATTSPLQSTSDLLTAPIQQQLSEGNLGYDNSSYVGSVIHVTNLNEAKVTPRA 300
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK D AL+QM + QA+ A+ L G L+GK++ V+ SK+
Sbjct: 301 LFILFGVYGDVYRVKILFNKKDTALIQMAEPHQAQTAIAHLHGIQLYGKKMFVSSSKYAQ 360
Query: 322 ITQGAD------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
+ + T +Y S L+RF + ++N++ P+ +HLS +P VTEE+I
Sbjct: 361 VQLPKEPDPSGLTQDYSQSALHRFKKVGSRNFQNIYPPSATLHLSNIPPSVTEEDIKELF 420
Query: 376 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
E G + F + + AL+ + +AT +L+ +H +G + +R+SFS+
Sbjct: 421 EGDGCTIARFRFFPSNNRMALLQMNSVGEATHSLIERHNYQIGSTYLRVSFSK 473
>gi|74194434|dbj|BAE37269.1| unnamed protein product [Mus musculus]
Length = 520
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/497 (31%), Positives = 246/497 (49%), Gaps = 107/497 (21%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASR 349
Query: 237 ----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQ+
Sbjct: 350 IAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQLPRE 408
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
Q + + T +Y +S L+RF + +KN++
Sbjct: 409 GQEDQGL----------------------------TKDYGSSPLHRFKKPGSKNFQNIFP 440
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+A +AL+
Sbjct: 441 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIEL 500
Query: 413 HASSLG-GSIIRISFSQ 428
H LG +R+SFS+
Sbjct: 501 HNHDLGENHHLRVSFSK 517
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|345777899|ref|XP_538790.3| PREDICTED: regulator of differentiation 1 [Canis lupus familiaris]
Length = 610
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 248/486 (51%), Gaps = 64/486 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD--------VPSA 54
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M + SA
Sbjct: 126 SPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLKMNKELCPHGPALHSA 185
Query: 55 INALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNR----------ILLVT 104
+ T+ G + ++ Q ++ ++ + P +L +
Sbjct: 186 WTVFTILVHTMYTLSG--LSRAQAALQAVSAVQSGSLALPGAPTNEGTILPGQSPVLRII 243
Query: 105 IHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY
Sbjct: 244 IENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIY 303
Query: 165 DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGVAFPQ 219
+ CC L I FS L L V YNN++SRDFT +LP G+PS + + G+
Sbjct: 304 NACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSP 362
Query: 220 MANAAAIAAAFG-------------GGLP---------------PGITGTNDRCTVLVSN 251
A AA A A G G L PG G +LV+N
Sbjct: 363 YAGAAGFAPAIGFHQATGISVPAVPGALGPLTITSSAVTGRMAIPGAGGLPGNSVLLVTN 422
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
LN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK
Sbjct: 423 LNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKV 482
Query: 312 LEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
L SKH + QG T ++ NS L+RF + +KN++ P+ +HLS +P
Sbjct: 483 LRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 541
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSII 422
VT +++ + E G V F +K AL+ + E+A +AL+ H LG +
Sbjct: 542 PSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHL 601
Query: 423 RISFSQ 428
R+SFS+
Sbjct: 602 RVSFSK 607
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
T Y N N N+ K R CSP++++HL +P DVTE E++S G + N L
Sbjct: 106 TGVYANGNDNK----KFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTN--LL 159
Query: 388 EMNGKKQALVLFETEEQATEALVCKHASSL 417
+ GK QA + E +C H +L
Sbjct: 160 MLKGKSQAFLKMNKE-------LCPHGPAL 182
>gi|189241313|ref|XP_966484.2| PREDICTED: similar to polypyrimidine tract binding protein
[Tribolium castaneum]
Length = 822
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 166/523 (31%), Positives = 248/523 (47%), Gaps = 99/523 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +++SE +++ L PFG +T +++L+ KNQA L+M + SA + +++
Sbjct: 299 KPSRVIHIRNIPNDVSEAEIVHLGIPFGRVTNVLVLKGKNQAFLEMGEESSATTMVNYFS 358
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQ---------------------------------- 88
+ +RGR VYVQ+S+H+EL T +
Sbjct: 359 SSMAQLRGRAVYVQYSNHKELKTDQTHSNAVTQAALQAAQALTSTQNSITPTSTPATPVT 418
Query: 89 NAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
N Q PN +L V I HM+YPI++++LH +F G V KIVTF K+ FQALIQY
Sbjct: 419 NGQDIQGGPNTVLRVIIEHMIYPISLDILHLIFQRFGKVLKIVTFTKNNSFQALIQYPDT 478
Query: 149 PSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV--------NYNN-------------- 186
SA A+ +L G+NIY+ CC L I +S + L V +Y N
Sbjct: 479 ASAQSAKQALDGQNIYNSCCTLRIDYSKMSSLNVKYNNDKSRDYTNPNLPTGDANDQLAT 538
Query: 187 ------------------------ERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMAN 222
ER D P G P G + +A P
Sbjct: 539 LGGGLAGGLGADILLLAAQPRLARERMADSILAGTPGVLSG-PFMHGLAST-LATPYGGG 596
Query: 223 AAAIAAAFGG----GLPPGITGTND-----RCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
A GG PG+ G +LVSNLN + + D LF LF +YG++
Sbjct: 597 VAGGIPGLGGFALGQTAPGLRGIAAPGLALATVLLVSNLNEETVTPDALFTLFGVYGDVQ 656
Query: 274 RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD------ 327
R+K+L NK D ALVQ+ + QA LA+ + +FGK + V SKH ++ +
Sbjct: 657 RVKILYNKKDSALVQLAEPHQAHLAITHMDKLKVFGKTIRVMLSKHQSVQMPKEGQPDAG 716
Query: 328 -THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
T +Y S L+RF + +KNY+ P+ +HLS +P + E++I ++G V
Sbjct: 717 LTKDYSQSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPATINEDDIKEAFTKNGFTVKAFK 776
Query: 387 FEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
F KK AL+ + E+A EAL+ H L S +R+SFS+
Sbjct: 777 FFPKDKKMALIQLPSMEEAVEALIRMHNYQLSESNHLRVSFSK 819
>gi|383854460|ref|XP_003702739.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Megachile
rotundata]
Length = 552
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 229/449 (51%), Gaps = 79/449 (17%)
Query: 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTME---------------- 87
A L+M D +A + +Y + +RGR VYVQFS+H+EL T +
Sbjct: 12 AFLEMADENAAATIVSYYASCIAQLRGRPVYVQFSNHRELKTDQTHANNANSNNQVALPG 71
Query: 88 --QNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQAL 142
Q AQ + + PN +L V + M+YPI+++VL+Q+F+ G V KIVTF K++ FQAL
Sbjct: 72 QNQVAQTQAETQGGPNTVLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNSTFQAL 131
Query: 143 IQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK 202
IQY SA A+ SL+G+NIY+ CC L I +S + L V YNN++SRD+TNP+LP
Sbjct: 132 IQYADMLSAQTAKLSLEGQNIYNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDA 191
Query: 203 GRPSQSGYSEAGVAFPQMANAA----------AIAAAFG---------GGLPPGITG--- 240
+ S + G PQ+ A +IA A G GLP + G
Sbjct: 192 NLDAAS-LALGGELLPQLLMGAGSQPRARIPESIAGAPGVLPTPFAAMHGLPSPLAGPYN 250
Query: 241 --------------------------TNDRCT--VLVSNLNSDRIDEDKLFNLFSLYGNI 272
TN + + +LVSNLN + + D LF LF +YG++
Sbjct: 251 GVPPAGGLAGLGGFPLGAAGLGVRVPTNAQTSAVLLVSNLNEEMVTPDALFTLFGVYGDV 310
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQG 325
R+K+L NK D AL+QM + QA LA+ + +FGK+++V SKH +
Sbjct: 311 QRVKILYNKKDSALIQMAEPHQAHLALTHMDKLRVFGKQIKVMLSKHQTVQLPKEGQPDA 370
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T +Y NS L+RF + +KNY+ P+ +HLS +P VTEEEI ++G V
Sbjct: 371 GLTKDYTNSPLHRFKKPGSKNYQNIYPPSATLHLSNIPTTVTEEEIRDAFTKNGFTVKAF 430
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHA 414
F +K AL+ + + A AL+ K+A
Sbjct: 431 KFFPKDRKMALIQMPSMDDAVAALIVKNA 459
>gi|281341342|gb|EFB16926.1| hypothetical protein PANDA_012716 [Ailuropoda melanoleuca]
Length = 540
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 158/506 (31%), Positives = 247/506 (48%), Gaps = 94/506 (18%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 45 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 104
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 105 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 164
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 165 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 222
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 223 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 281
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 282 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 338
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF + + + H + + D
Sbjct: 339 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGMLSFTLLLPCF-----HLMEVILD 392
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
+ + + L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 393 ALRCTMTMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 451
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+E+++ +G IV F +K AL+ + E
Sbjct: 452 SKNFQNIFPPSATLHLSNIPPSVSEDDLKVLFSSNGGIVKGFKFFQKDRKMALIQMGSVE 511
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 512 EAIQALIDLHNHDLGENHHLRVSFSK 537
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 28 NGNDSKKFKGDNRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 85
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 86 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 128
>gi|148701925|gb|EDL33872.1| mCG9934 [Mus musculus]
Length = 559
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 255/531 (48%), Gaps = 105/531 (19%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+ ++ ++E+++L L PFG ++ L+ L+AKNQA ++M SA + +YT
Sbjct: 27 PSRVIHIHSLPTSVTESEILCLALPFGKVSNLLFLKAKNQAFMEMSTEESAKAMVNYYTW 86
Query: 64 VQPTIRGRNVYVQ-FSSH-QELTTMEQNAQG------RGDEP------------------ 97
+ P +RG+ V++Q ++ H +EL +Q D+P
Sbjct: 87 MTPVLRGQPVHIQVYTPHCKELRVSNTPSQVGAQLCLPADDPYQAWNVAPATPASAVDTG 146
Query: 98 ------NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
+L + + + Y +T+EVLHQ+FS G V KI+T+ K+ FQAL+QY SA
Sbjct: 147 LVVAGQGTVLRILVDNFFYRVTLEVLHQLFSRFGTVLKIITYTKNNRFQALLQYAHSMSA 206
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL-------------- 197
A+ L G+NIYD CC L I FS L L V YNN+ SRD+T P+L
Sbjct: 207 KCAKLCLDGQNIYDACCTLRISFSGLTNLIVKYNNDESRDYTRPDLPSDESQPSPVQVQN 266
Query: 198 -------PAEQKGRPSQSGYSEAGVAFPQMANAAA--IAAAFGGGLPPGITGTNDRCT-- 246
P P S S +A PQ A A + A P + + T
Sbjct: 267 MASAFTAPVMTTASPYASTASSHNLAVPQAAGLATPEVLRALALKAVPEVAVESSSSTAT 326
Query: 247 ----------------------------------------VLVSNLNSDRIDEDKLFNLF 266
+LV+NLN +++ LF LF
Sbjct: 327 GGALAAEAAIATAAAAAAAAAPGAESSMVTSGSQGVGNPVLLVANLNPEKVTPQSLFILF 386
Query: 267 SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--- 323
YG++ R+K+L N+ ++ALVQM DG QAELA+ L G L+GK L + SKH ++
Sbjct: 387 GAYGDVQRVKILFNRKENALVQMADGSQAELALKHLNGHKLYGKALCILPSKHQSVKLPR 446
Query: 324 QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 379
+G + T EY+NS L+RF + +KN++ P+ +HLS LP V++EE+ + G
Sbjct: 447 EGKEDQDLTKEYVNSWLHRFKKPGSKNFQNIFPPSATLHLSNLPSSVSKEELKNLFSSSG 506
Query: 380 SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQL 429
V F K AL+ + E+A +AL+ H LG +R+SFS++
Sbjct: 507 GAVKAFKFFPKNHKMALIRMGSIEEAIQALIDLHGHPLGQNHHMRVSFSRI 557
>gi|270013160|gb|EFA09608.1| hypothetical protein TcasGA2_TC011728 [Tribolium castaneum]
Length = 876
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 248/525 (47%), Gaps = 101/525 (19%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +++SE +++ L PFG +T +++L+ KNQA L+M + SA + +++
Sbjct: 351 KPSRVIHIRNIPNDVSEAEIVHLGIPFGRVTNVLVLKGKNQAFLEMGEESSATTMVNYFS 410
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQ---------------------------------- 88
+ +RGR VYVQ+S+H+EL T +
Sbjct: 411 SSMAQLRGRAVYVQYSNHKELKTDQTHSNANASAQAALQAAQALTSTQNSITPTSTPATP 470
Query: 89 --NAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
N Q PN +L V I HM+YPI++++LH +F G V KIVTF K+ FQALIQY
Sbjct: 471 VTNGQDIQGGPNTVLRVIIEHMIYPISLDILHLIFQRFGKVLKIVTFTKNNSFQALIQYP 530
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV--------NYNN------------ 186
SA A+ +L G+NIY+ CC L I +S + L V +Y N
Sbjct: 531 DTASAQSAKQALDGQNIYNSCCTLRIDYSKMSSLNVKYNNDKSRDYTNPNLPTGDANDQL 590
Query: 187 --------------------------ERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQM 220
ER D P G P G + +A P
Sbjct: 591 ATLGGGLAGGLGADILLLAAQPRLARERMADSILAGTPGVLSG-PFMHGLAST-LATPYG 648
Query: 221 ANAAAIAAAFGG----GLPPGITGTND-----RCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A GG PG+ G +LVSNLN + + D LF LF +YG+
Sbjct: 649 GGVAGGIPGLGGFALGQTAPGLRGIAAPGLALATVLLVSNLNEETVTPDALFTLFGVYGD 708
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD---- 327
+ R+K+L NK D ALVQ+ + QA LA+ + +FGK + V SKH ++ +
Sbjct: 709 VQRVKILYNKKDSALVQLAEPHQAHLAITHMDKLKVFGKTIRVMLSKHQSVQMPKEGQPD 768
Query: 328 ---THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
T +Y S L+RF + +KNY+ P+ +HLS +P + E++I ++G V
Sbjct: 769 AGLTKDYSQSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPATINEDDIKEAFTKNGFTVKA 828
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
F KK AL+ + E+A EAL+ H L S +R+SFS+
Sbjct: 829 FKFFPKDKKMALIQLPSMEEAVEALIRMHNYQLSESNHLRVSFSK 873
>gi|17861972|gb|AAL39463.1| LD03185p [Drosophila melanogaster]
Length = 571
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 162/481 (33%), Positives = 233/481 (48%), Gaps = 112/481 (23%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 69 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 128
Query: 61 YTNVQPTIRGRNVYVQF---------------SSHQELT--------------------- 84
YT P +RGR VYVQF ++H + +
Sbjct: 129 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 188
Query: 85 -----------------TMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPH 124
T NA G + PN +L V + ++YP+++++LHQ+F +
Sbjct: 189 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 248
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V Y
Sbjct: 249 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKY 308
Query: 185 NNERSRDFTNPNLPAEQKG-----------------------RPSQS------GYSEAGV 215
NN++SRDFTNP LP + G RPS S G GV
Sbjct: 309 NNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGV 368
Query: 216 AFP---------------QMANAAAIAAAFGGGL---PPGITGTNDRCTVLVSNLNSDRI 257
P + N AA + A G L P + G ++ +LVSNLN + +
Sbjct: 369 LPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN--VLLVSNLNEEMV 426
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L L+GK + V S
Sbjct: 427 TPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMAS 486
Query: 318 KHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + T +Y + L+RF + +KNY+ P+ +HLS +P +E++
Sbjct: 487 KHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDD 546
Query: 371 I 371
I
Sbjct: 547 I 547
>gi|395535423|ref|XP_003769725.1| PREDICTED: polypyrimidine tract-binding protein 2 [Sarcophilus
harrisii]
Length = 494
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 240/446 (53%), Gaps = 56/446 (12%)
Query: 35 LVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
+V + + +A L++ +AI + +Y+ V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 50 VVTVCSLKEAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 109
Query: 92 G---------RGDEP---------------NRILLVTIHHMLYPITVEVLHQVFSPHGFV 127
+ P + +L + I +M YP+T++VLHQ+FS G V
Sbjct: 110 AVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAV 169
Query: 128 EKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNE 187
KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN+
Sbjct: 170 LKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNND 229
Query: 188 RSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG-GLP----------- 235
+SRD+T P+LP+ G+P+ AF + + A+ A +P
Sbjct: 230 KSRDYTRPDLPSGD-GQPALD--PAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAA 286
Query: 236 -----PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
PG++ + +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM
Sbjct: 287 GRVGMPGVSAGGN-TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMA 345
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNA 343
DG Q++LA++ L G ++GK + V SKH + +G D T ++ NS L+RF +
Sbjct: 346 DGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPG 405
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V EE++ + G V F K AL+ T E
Sbjct: 406 SKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVE 465
Query: 404 QATEALVCKHASSLGGS-IIRISFSQ 428
+A +AL+ H +LG + +R+SFS+
Sbjct: 466 EAIQALIDLHNYNLGENHHLRVSFSK 491
>gi|194740822|ref|XP_001952889.1| GF17502 [Drosophila ananassae]
gi|190625948|gb|EDV41472.1| GF17502 [Drosophila ananassae]
Length = 835
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 174/574 (30%), Positives = 259/574 (45%), Gaps = 148/574 (25%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKV+H+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 261 IAKASKVVHLRNIPNESGESDVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 320
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQ-------------------------------- 88
YT P +RGR VYVQFS+H+EL T +
Sbjct: 321 YTVNPPQMRGRMVYVQFSNHRELKTDQSHNNSVVQSDYRIQSPAGGSPLPLCAATNASNS 380
Query: 89 -NAQGRGDE--------------------PNRILLVTIHHMLYPITVEVLHQVFSPHGFV 127
N+ G G+ PN +L V + ++YP+++++LHQ+F +G V
Sbjct: 381 ANSSGDGNGTVAILQNNTSAGNNSNSAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKV 440
Query: 128 EKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNE 187
KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L I S L L V YNN+
Sbjct: 441 LKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNND 500
Query: 188 RSRDFTNPNLPAEQKG-----------------------RPSQS--GYSEAGVAFP-QMA 221
+SRDFTNP LP + G RPS + G GV P +
Sbjct: 501 KSRDFTNPALPPGEPGVDLMPTAGGLMNTNDLLLIAPRQRPSLTVNGLGAPGVLPPFALG 560
Query: 222 NAAAIAAAFGGGLP----------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNL 265
+ + LP P + G ++ +LVSNLN + + D LF L
Sbjct: 561 LGTPLTGGYSSALPNLAFSLANSGALQTAAPTMRGYSN--VLLVSNLNEEMVTPDALFTL 618
Query: 266 F-------------------------------------------SLYGNIIRIKLLRNKP 282
F +YG++ R+K+L NK
Sbjct: 619 FEYIDYRSFDHVSKCGANIMGFDATTVRLCQPFSWGVFLGDSVSGVYGDVQRVKILYNKK 678
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSN 335
D AL+Q+ + QA LA+ L L+GK + V SKH + T +Y +
Sbjct: 679 DSALIQLAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNP 738
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
L+RF + +KNY+ P+ +HLS +P +E++I + V F +K A
Sbjct: 739 LHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMA 798
Query: 396 LVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
L+ + E+A AL+ H L S +R+SFS+
Sbjct: 799 LLQLSSVEEAVLALIKMHNHQLSESNHLRVSFSK 832
>gi|25146811|ref|NP_741041.1| Protein PTB-1, isoform a [Caenorhabditis elegans]
gi|20338920|emb|CAA85411.3| Protein PTB-1, isoform a [Caenorhabditis elegans]
Length = 615
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 160/493 (32%), Positives = 247/493 (50%), Gaps = 69/493 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKV+HVRN+ ++ + +L+QL +G ++ +ML+ K+QA ++ ++ SA + T V
Sbjct: 120 SKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAV 179
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNA----------------QGRGDEPNRILLVTIHHM 108
IRGR ++ Q+S+H+EL + A G +PN +L I +M
Sbjct: 180 PIQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENM 239
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC 168
++P++++VL+Q+F+ +G V +I+TF K+ FQAL+Q SA +A+ L+ +N+Y+GCC
Sbjct: 240 MFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCC 299
Query: 169 QLDIQFSNLDELQVNYNNERSRDFTNPNLPA-----EQKGRPSQSGYSEAGVAFP-QMAN 222
L I +S L L V YNN++SRD+TNPNLPA EQ S G A P A
Sbjct: 300 TLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPANPYNFAF 359
Query: 223 AAAIAAAF----------------------------------GGGLPPGITG-----TND 243
A A F L P I+ N
Sbjct: 360 GANPATTFLTTQLAASTAAAAAVNDSANAAALAPYLNPLGLTSANLAPSISSMRFPMINL 419
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
+LVSNL+ ++ D LF LF +YG+++R+K+L NK D+AL+Q + QA+LA+ L
Sbjct: 420 TPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLD 479
Query: 304 GALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
+ + V SKH N+ + T +Y +S L+RF + +KNY P
Sbjct: 480 KVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCAT 539
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
+HLS +P V+EE++ E G V F K AL E E A +AL+ H
Sbjct: 540 LHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHK 599
Query: 417 LG-GSIIRISFSQ 428
L + +R+SFS+
Sbjct: 600 LAENAHLRVSFSK 612
>gi|67678144|gb|AAH97557.1| VgRBP60 protein [Xenopus laevis]
Length = 472
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 233/465 (50%), Gaps = 97/465 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+VIH+R + +++E +++ L PFG +T ++ML+ KNQA L+M +A + +YTNV
Sbjct: 61 SRVIHLRKLPGDVTEAEVISLGLPFGKVTNILMLKGKNQAFLEMSTEEAANTMISYYTNV 120
Query: 65 QPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQG 92
P +R + +Y+Q+S+H+EL T ++
Sbjct: 121 APVLRSQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTTALSASAAAVDVGIAM 180
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
G P +L + + ++ YP+T++VL Q+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 181 SGQSP--VLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQ 238
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSE 212
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+PS
Sbjct: 239 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-GQPSLD---- 293
Query: 213 AGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
IAA F +YG++
Sbjct: 294 -----------QTIAA-------------------------------------FGVYGDV 305
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQ 324
R+K+L NK ++ALVQM DG QA+LA+ L G L GK L SKH + Q
Sbjct: 306 HRVKILFNKKENALVQMADGNQAQLAMSHLNGQRLHGKPLRTTVSKHQTVQLPREGQEDQ 365
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT 384
G T +Y S L+RF + +KN++ P+ +HLS +P V+EE++ +G V
Sbjct: 366 GL-TKDYSTSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKILFSNNGYAVKG 424
Query: 385 KLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F +K AL+ + E+A E+L+ H +G +R+SFS+
Sbjct: 425 FKFFQKDRKMALIQMGSVEEAIESLIELHNHDMGENHHLRVSFSK 469
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 335 NLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
NL N N +K + R +++IHL LP DVTE E++S G + N + +
Sbjct: 38 NLYGSNGNDSKKFKGDGRSVAVGSRVIHLRKLPGDVTEAEVISLGLPFGKVTN--ILMLK 95
Query: 391 GKKQALVLFETEEQA 405
GK QA + TEE A
Sbjct: 96 GKNQAFLEMSTEEAA 110
>gi|338720441|ref|XP_003364168.1| PREDICTED: regulator of differentiation 1 isoform 2 [Equus
caballus]
Length = 457
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 230/457 (50%), Gaps = 76/457 (16%)
Query: 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR---------- 93
A L+M +A+ + +YT V P +R + V++Q+S+H+EL T Q R
Sbjct: 2 AFLEMASEEAAVTMVNYYTPVTPHLRSQPVFIQYSNHRELKTDNLPNQARVQAALQAVSA 61
Query: 94 --------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF
Sbjct: 62 VQSGSLALPGAPTNEGTVLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 119
Query: 134 QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT 193
K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT
Sbjct: 120 TKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFT 179
Query: 194 NPNLPAEQKGRPS-----QSGYSEAGVAFPQMANAAAIAAAFG-------------GGLP 235
+LP G+PS + + G+ A AA A A G G L
Sbjct: 180 RLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQGTGLSVQTVPGALG 238
Query: 236 ---------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN 280
PG +G +LV+NLN D + LF LF +YG++ R+K++ N
Sbjct: 239 PLAVTSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFN 298
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYM 332
K ++ALVQM D QA+LA++ L G L+GK L SKH + QG T ++
Sbjct: 299 KKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFS 357
Query: 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGK 392
NS L+RF + +KN++ P+ +HLS +P VT +++ + E G V F +
Sbjct: 358 NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDR 417
Query: 393 KQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 418 KMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 454
>gi|328867981|gb|EGG16362.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 656
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 222/401 (55%), Gaps = 55/401 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PSKVIH+RN+ + +E++++ + PFG + +++L+ K+Q +Q ++ SA + +QFYT
Sbjct: 246 QPSKVIHLRNLPIDCTEHEIMAIAAPFGQVDHILILKGKSQGFIQFLELTSASSFIQFYT 305
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
+Q IR +N +VQ+S+ +E+T+ + PN ILLVTI +++YP+T+EVL+Q+F
Sbjct: 306 TIQGCIRAKNFFVQYSNREEITST-----SAVETPNNILLVTISNIVYPVTIEVLYQLFG 360
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
+G V KI+ F KS FQ+L+Q SA+ A+ L G++IY GCC + IQ+S+L L++
Sbjct: 361 KYGSVLKILIFSKSGNFQSLVQLHSLESAIQAKRELDGQSIYSGCCTMKIQYSSLSNLRI 420
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGY--SEAGVAFPQ--------------MANAAAI 226
YNN++SRDFTNP L G PS G+ + AG Q ++N +
Sbjct: 421 KYNNDKSRDFTNPTL---MSGIPSTIGFGNNSAGQLMSQQHAAAAAAIVNQGAISNPHLV 477
Query: 227 AAAFGGGLPP------------GITGTNDRC-----------TVLVSNLNSDRIDEDKLF 263
A G+ P G+TG + ++V L +D LF
Sbjct: 478 NPATNMGVGPSSAAAAAVAQSLGMTGLQPQAMATLFPHISTPVLIVGGLPLSASPQD-LF 536
Query: 264 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT 323
NLF +YG+ IRIK++ NK D AL+QM QAELA+ +L G L VN S+H +I+
Sbjct: 537 NLFGVYGDPIRIKIMFNKKDTALIQMNLPQQAELALQYLNNVPFRGSILRVNLSRHASIS 596
Query: 324 -------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
Q T +Y S +RF + +KNY+ P+ +
Sbjct: 597 MPKSGDAQSDFTKDYTGSASHRFKQPGSKNYQNIHPPSMFL 637
>gi|349732186|ref|NP_001231825.1| polypyrimidine tract-binding protein 3 isoform 4 [Homo sapiens]
gi|332832555|ref|XP_001149256.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pan
troglodytes]
Length = 457
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 231/455 (50%), Gaps = 72/455 (15%)
Query: 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTT------------------ 85
A L+M +A+ + +YT + P +R + VY+Q+S+H+EL T
Sbjct: 2 AFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSA 61
Query: 86 MEQNAQGRGDEPNR----------ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK 135
++ + P+ +L + I ++ YP+T+EVLHQ+FS G V KI+TF K
Sbjct: 62 VQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTK 121
Query: 136 SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP 195
+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT
Sbjct: 122 NNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRL 181
Query: 196 NLPAEQKGRPS-----QSGYSEAGVAFPQMANAAAIAAAFG-------------GGLP-- 235
+LP G+PS + + G+ A AA A A G G L
Sbjct: 182 DLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 240
Query: 236 -------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
PG +G +LV+NLN D I LF LF +YG++ R+K++ NK
Sbjct: 241 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKK 300
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNS 334
++ALVQM D QA+LA++ L G L+GK L SKH + QG T ++ NS
Sbjct: 301 ENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNS 359
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KN++ P+ +HLS +P VT +++ + E G V F +K
Sbjct: 360 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 419
Query: 395 ALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 420 ALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 454
>gi|380801045|gb|AFE72398.1| regulator of differentiation 1 isoform 1, partial [Macaca mulatta]
Length = 456
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 231/455 (50%), Gaps = 72/455 (15%)
Query: 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTT------------------ 85
A L+M +A+ + +YT + P +R + VY+Q+S+H+EL T
Sbjct: 1 AFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSA 60
Query: 86 MEQNAQGRGDEPNR----------ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK 135
++ + P+ +L + I ++ YP+T+EVLHQ+FS G V KI+TF K
Sbjct: 61 VQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTK 120
Query: 136 SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP 195
+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT
Sbjct: 121 NNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRL 180
Query: 196 NLPAEQKGRPS-----QSGYSEAGVAFPQMANAAAIAAAFG-------------GGLP-- 235
+LP G+PS + + G+ A AA A A G G L
Sbjct: 181 DLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 239
Query: 236 -------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
PG +G +LV+NLN D I LF LF +YG++ R+K++ NK
Sbjct: 240 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKK 299
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNS 334
++ALVQM D QA+LA++ L G L+GK L SKH + QG T ++ NS
Sbjct: 300 ENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNS 358
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KN++ P+ +HLS +P VT +++ + E G V F +K
Sbjct: 359 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 418
Query: 395 ALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 419 ALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 453
>gi|193786069|dbj|BAG50959.1| unnamed protein product [Homo sapiens]
Length = 457
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 231/455 (50%), Gaps = 72/455 (15%)
Query: 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTT------------------ 85
A L+M +A+ + +YT + P +R + VY+Q+S+H+EL T
Sbjct: 2 AFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSA 61
Query: 86 MEQNAQGRGDEPNR----------ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK 135
++ + P+ +L + I ++ YP+T+EVLHQ+FS G V KI+TF K
Sbjct: 62 VQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTK 121
Query: 136 SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP 195
+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT
Sbjct: 122 NNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLISLNVKYNNDKSRDFTRL 181
Query: 196 NLPAEQKGRPS-----QSGYSEAGVAFPQMANAAAIAAAFG-------------GGLP-- 235
+LP G+PS + + G+ A AA A A G G L
Sbjct: 182 DLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 240
Query: 236 -------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
PG +G +LV+NLN D I LF LF +YG++ R+K++ NK
Sbjct: 241 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKK 300
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNS 334
++ALVQM D QA+LA++ L G L+GK L SKH + QG T ++ NS
Sbjct: 301 ENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNS 359
Query: 335 NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
L+RF + +KN++ P+ +HLS +P VT +++ + E G V F +K
Sbjct: 360 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 419
Query: 395 ALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 420 ALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 454
>gi|301776290|ref|XP_002923578.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 526
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 157/506 (31%), Positives = 239/506 (47%), Gaps = 120/506 (23%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILF------------------------- 384
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNA 343
A+ L G L GK + + SKH N+ QG T +Y NS L+RF +
Sbjct: 385 ------AMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPG 437
Query: 344 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
+KN++ P+ +HLS +P V+E+++ +G IV F +K AL+ + E
Sbjct: 438 SKNFQNIFPPSATLHLSNIPPSVSEDDLKVLFSSNGGIVKGFKFFQKDRKMALIQMGSVE 497
Query: 404 QATEALVCKHASSLG-GSIIRISFSQ 428
+A +AL+ H LG +R+SFS+
Sbjct: 498 EAIQALIDLHNHDLGENHHLRVSFSK 523
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|330789887|ref|XP_003283030.1| hypothetical protein DICPUDRAFT_85687 [Dictyostelium purpureum]
gi|325087102|gb|EGC40483.1| hypothetical protein DICPUDRAFT_85687 [Dictyostelium purpureum]
Length = 488
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 233/443 (52%), Gaps = 21/443 (4%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS V+H R + I+E+DL L PFG I + MLR QAL++M V S+ N +
Sbjct: 39 EPSPVVHCRGLPITITESDLHSLLSPFGKIQAVCMLRM-GQALIEMDSVQSSSNIINRSI 97
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQN-AQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ + + +S Q L +++N G I+L TI + YPIT LH +
Sbjct: 98 TKPFLLNNQKILFSYSKSQHLNNVKKNQPMVPGGSNQNIILCTILNPFYPITTNTLHTIM 157
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
SP+G V +IV FQK +G QA +++ SA A+ +L G NIY CC+L I+F+ + +L
Sbjct: 158 SPYGRVLRIVIFQKKSGLQAFVEFDSPYSANTAKETLNGYNIYTECCKLQIEFARVSKLN 217
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS--GYSEAGVAFPQMANAAAIAAAFG-----GGL 234
V N+E++ D+T P+ ++Q + Q Y A + P A+ A G GG
Sbjct: 218 VKQNDEKTADYTTPDFYSQQLIQSPQGMQMYHHAAGSNPFGASHGAGFINGGGPQQYGGA 277
Query: 235 P---PGITGTN--DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
P P + ++ + VS + D ID DKLFNLF LYGN+I+IK+L N A+VQM
Sbjct: 278 PYMYPAVGNPESVNQPVISVSKIPED-IDTDKLFNLFCLYGNVIKIKMLHNSKGSAMVQM 336
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRY 349
GD QAE+AV L + ++G+++ +KHP I T +Y S LNRF N+ +
Sbjct: 337 GDSIQAEIAVQCLNHSFIYGQKINCYHTKHPFIVDSEKTKDYSKSTLNRF-LNSQPYGKN 395
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEM---NGKKQALVLFETEEQ 404
P+ +H +P +E+++ ++G+ ++ K F + K L+ F+
Sbjct: 396 AYKPSSTLHFLNVPLHYSEKQLSDVFAKNGTHYPIHVKFFPTKPESTKHLGLLEFQDTRS 455
Query: 405 ATEALVCKHASSLGGSIIRISFS 427
ATEAL+ + + G+ +++SF+
Sbjct: 456 ATEALMDLNNYKVEGNPLKLSFT 478
>gi|47218405|emb|CAG12676.1| unnamed protein product [Tetraodon nigroviridis]
Length = 582
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 255/549 (46%), Gaps = 133/549 (24%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ-------------------- 43
PS+V+H+R + +E +E +++ L PFG +T ++ L+ KNQ
Sbjct: 40 PSRVLHIRKLPNEATETEIIALGLPFGKVTNILTLKGKNQVKEPDCNHSLLPCRRGPGPG 99
Query: 44 ---------ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQN----- 89
A L+M +AI + +Y V P +R V++Q+S+H+EL T N
Sbjct: 100 ALTVALCLQAFLEMGTEEAAITMVNYYATVTPHVRNVPVFIQYSNHKELKTDAGNQRTQA 159
Query: 90 ------AQGRGDEPNR------------ILLVTIHHMLYPITVEVLHQVFSPHGF----- 126
A G P+ +L + I +M YP+T++VL QV PH
Sbjct: 160 VLQAVSAVQSGGSPSSDVQEALAAASSPVLRIIIDNMFYPVTLDVLQQVAFPHPLPPSVG 219
Query: 127 --VEKIVTFQKSAGF---------------------QALIQYQLR---------PSAVVA 154
V K F S+ F A+ + + R P V+A
Sbjct: 220 RSVSKSGLFLGSSDFLQVRHSHEDNHLHQEQSVPGSSAVQRPRQRAAGQTGKALPPGVLA 279
Query: 155 RSS---------LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205
S L G+NIY+ CC L I FS L L V YNN++SRD+T P LPA G+P
Sbjct: 280 ACSGLTFIHLQALDGQNIYNSCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGD-GQP 338
Query: 206 SQSGYSEAGVAFPQMANAAAIAAAFGGGLPP-----------------GITGTNDRCTVL 248
S AF + +N+ + G L P G G+ +L
Sbjct: 339 SLD--PAVAAAFSKDSNS--LLGKIPGALTPLSAAAAAAAAAGRVALAGQAGSGG--VLL 392
Query: 249 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF 308
VSNLN + + LF LF +YG++ R+K+L NK D AL+QM D QA+LA+ L G ++
Sbjct: 393 VSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDANQAQLAMSHLNGQKMY 452
Query: 309 GKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLST 361
GK + V SKH ++ D T +Y NS L+RF + +KN++ P+ +HLS
Sbjct: 453 GKIIRVTLSKHQSVALPRDGLDDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSN 512
Query: 362 LPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
+PQ+VTE+++ G V K F+ +K AL+ T E+A +AL+ H ++GG+
Sbjct: 513 IPQNVTEDDLRLLFSNTGGTVKAFKFFQ--DRKMALIQMSTVEEAIQALIDLHNYNMGGN 570
Query: 421 I-IRISFSQ 428
+R+SFS+
Sbjct: 571 QHLRVSFSK 579
>gi|395745998|ref|XP_003778369.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Pongo abelii]
Length = 551
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 252/480 (52%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V H++ + +++E +++ L PFG +T L+ML+ KNQA ++++ +A +YT+
Sbjct: 57 PSRVTHIQKLPXDVTEGEVISLELPFGNVTNLLMLKGKNQAFIELRTEGAANTVENYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+ L T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKGLKTDSSPNQARDLAAXQAVNSVQSGNLALTAPAAAVDAGMA 176
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V I TF K FQAL+QY +A
Sbjct: 177 MAGQSP--VLRIIVENLFYPMTLDVLHQIFSKFGKVNTI-TFIKDNQFQALLQYADPENA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL +N Y+ C L I FS L L V YN ++S D+ P+LP+ + +PS Q
Sbjct: 234 QHAKLSLDWQNTYNACITLCIDFSKLTSLNVRYN-DKSSDYXRPDLPS-RDSQPSLDQXM 291
Query: 210 YSEAGVAFPQMANAAAIAA---------AFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ ++ P + A A A A G PG+ G + +LVSNLN +R+
Sbjct: 292 AAAFDLSVPNIHGALAPLAIPLAVAAAAAAGRIATPGLAGAGN-SVLLVSNLNPERVTPQ 350
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RL-EVNF 316
LF LFS+YG++ +K+ NK ++ALVQM DG QA+LA+ L GK RL +
Sbjct: 351 SLFILFSVYGDVQCVKISFNK-ENALVQMADGNQAQLALSHRNWHKLHGKPPHRLVRITP 409
Query: 317 SKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH N+ +G + T +Y NS L+R + KN++ P+ +HLS +P V+EE
Sbjct: 410 SKHQNVQLPREGREDQDLTKDYGNSPLHRLKKPGFKNFQNIFQPSATVHLSNIPPSVSEE 469
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
++ HG ++ K F+ + +K A + + E+A A + H + + +R+SFS+
Sbjct: 470 DLKVLSSSHGGVIGFKFFQKD-RKMAPIQMRSVEEAVRAPIDLHNHGVWENYHLRVSFSK 528
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA-- 405
R P+++ H+ LP DVTE E++S G++ N L + GK QA + TE A
Sbjct: 52 RSAGVPSRVTHIQKLPXDVTEGEVISLELPFGNVTN--LLMLKGKNQAFIELRTEGAANT 109
Query: 406 TEALVCKHASSLGGSIIRISFSQLQSIRENS 436
E L G I I FS + ++ +S
Sbjct: 110 VENYYTSVTPVLRGQPIYIQFSNHKGLKTDS 140
>gi|355558193|gb|EHH14973.1| hypothetical protein EGK_00996, partial [Macaca mulatta]
Length = 529
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 208/370 (56%), Gaps = 31/370 (8%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 163 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 220
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 221 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 279
Query: 204 RPSQSGYSEAGVAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCT 246
+P+ A AF + + A+ A +P PG++ +
Sbjct: 280 QPALDPAIAA--AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TV 336
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G
Sbjct: 337 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 396
Query: 307 LFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HL
Sbjct: 397 MYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHL 456
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
S +P V EE++ + G V F K AL+ T E+A +AL+ H +LG
Sbjct: 457 SNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGE 516
Query: 420 S-IIRISFSQ 428
+ +R+SFS+
Sbjct: 517 NHHLRVSFSK 526
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ 43
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQ
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 93
>gi|296489304|tpg|DAA31417.1| TPA: polypyrimidine tract binding protein 2-like [Bos taurus]
Length = 496
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 253/473 (53%), Gaps = 53/473 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 85
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 86 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 145
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAK- 204
Query: 157 SLQGRNIY-------DGCCQLDI-----QFSNLDELQVNYNNERSRDFTN-PNLPAEQKG 203
L+ +N + + + D +F + +V Y + N N P++
Sbjct: 205 -LEKKNDHQWLMAAAEATPKADFTLRRERFISSSWFRVLYTFRETSPVMNYRNDPSKYSL 263
Query: 204 RPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLF 263
+ G + + +A P A AAA AAA G+P G N +LVSNLN + + LF
Sbjct: 264 EKTVPG-ALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLF 320
Query: 264 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI- 322
LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH +
Sbjct: 321 TLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQ 380
Query: 323 --TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
+G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ +
Sbjct: 381 LPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFA 440
Query: 377 EHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
G V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 441 NTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 493
>gi|324504709|gb|ADY42030.1| Regulator of differentiation 1 [Ascaris suum]
Length = 560
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 210/419 (50%), Gaps = 74/419 (17%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
+ ++ +A +PN +L V I +MLYP+T++VLHQ+FS +G V +I+TF K+ FQAL+
Sbjct: 139 SALDISASCTQQQPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALV 198
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA---- 199
Q SA +AR SL G+N+Y+GCC L I +S L L V YNN++SRD+TNPNLP+
Sbjct: 199 QLSEATSAQMARQSLDGQNVYNGCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELT 258
Query: 200 -EQK--------------------GRPSQSGYSEAG--------VAFPQMANAAAIAAAF 230
EQ+ P +S A AFPQ A A+AA+
Sbjct: 259 LEQQLSLVSAATGGQMGPAIASLVQSPFAFPFSAANPQYALQQQAAFPQAGFADALAASP 318
Query: 231 GGGLP--PGITGT-------------------------------NDRCTVLVSNLNSDRI 257
G P G+T T N +LVSNL+ ++I
Sbjct: 319 SGMSPFLTGLTTTLASGAGSPAAANAAVLNATAAALRFPHVGVLNISPVILVSNLDENKI 378
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
D LF LF +YG++ R+K+L NK D+AL+Q + QA+LA+ L K++ V S
Sbjct: 379 TPDALFTLFGVYGDVQRVKILFNKKDNALIQYAEPQQAQLAIQHLDKVRWHDKQIRVATS 438
Query: 318 KHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH N+ + T +Y S L+RF + +KNY P+ +HLS +P ++TEE
Sbjct: 439 KHSNVQMPKEGQPDAGLTRDYSQSPLHRFKKPGSKNYMNIYPPSATLHLSNIPPNITEEY 498
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ S E+ G F K AL+ E A EAL+ H L + +R+SFS+
Sbjct: 499 LTSAFEQRGFTPKGFKFFPKDHKMALLQLNDIETAIEALIEMHNFKLAENAHLRVSFSK 557
>gi|449267533|gb|EMC78469.1| Regulator of differentiation 1, partial [Columba livia]
Length = 499
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 144/486 (29%), Positives = 239/486 (49%), Gaps = 61/486 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R++ + +E ++L L PFG +T ++ML+ K QA ++ A+N + +Y
Sbjct: 12 SPSRVLHLRHIPSDATE-EVLSLALPFGKVTNILMLKGKRQAFSEVGTEEPAVNVMNYYA 70
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG------------------------DEP- 97
+ P + + +++Q+S+ +EL T Q R D+P
Sbjct: 71 SAAPLLHSQPLFIQYSNPRELRTDYLPDQARAEAMFHPVDTTLFESQPVASASEARDDPF 130
Query: 98 ---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + + ++ + I++E+LH++ SP G V +I+ F K FQAL +Y SA A
Sbjct: 131 PDVRCVLRIIVDNVSHHISLEMLHEILSPFGPVLRIIIFTKYGKFQALAEYDNPRSAYCA 190
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ----KGRPSQSGY 210
+ +L G+ I+ C + + +S L + YNNE+SRDFT +LP+ +P + Y
Sbjct: 191 KKTLNGQGIFTSDCFIRVDYSKFTSLAIKYNNEKSRDFTRLDLPSGDGQIYMDQPIAAAY 250
Query: 211 SEAGVAFPQMANAA------AIAAAFGGGLPPGITGT--------------NDRCTVLVS 250
P AA + + G +PP T ++ +LVS
Sbjct: 251 GIQNNIVPSYTGAAGFTPNMSFSQGAGSLVPPLPTAVRSLAPPGQRTYPDFSENSVLLVS 310
Query: 251 NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK 310
NLN + + LF LF +YGN+ R+K++ + ALVQM D QA LA+ +L G L+G+
Sbjct: 311 NLNPNAVTPYGLFILFGIYGNVHRVKIMFRTKEKALVQMADANQARLAISYLNGQKLYGR 370
Query: 311 RLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
L FSKH + G D T +Y NS L+RF +KN++ P+ +HLS +P
Sbjct: 371 VLHATFSKHHTVQLLRGGRDDQGLTKDYSNSPLHRFKIPGSKNFQNIFPPSATLHLSNIP 430
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSII 422
VT +++ + G V F N + AL+ + E+A AL+ H LG +
Sbjct: 431 SCVTVDDMKNLFASTGCTVKACRFFRNNCRTALIQLGSVEEAVHALIELHNHDLGQNRTL 490
Query: 423 RISFSQ 428
R+SF++
Sbjct: 491 RVSFAK 496
>gi|328788959|ref|XP_625087.3| PREDICTED: polypyrimidine tract-binding protein 2 [Apis mellifera]
Length = 449
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 195/375 (52%), Gaps = 58/375 (15%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + M+YPI+++VL+Q+F+ G V KIVTF K+ FQALIQY SA A+
Sbjct: 32 PNTVLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKL 91
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
SL+G+NIY+ CC L I +S + L V YNN++SRD+TNP+LP + S + G
Sbjct: 92 SLEGQNIYNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAAS-LALGGEL 150
Query: 217 FPQMANAA----------AIAAAFG---------GGLPPGITG----------------- 240
PQ+ A +IA A G GLP + G
Sbjct: 151 LPQLLMGAGSQPRARIPESIAGAPGVLPTPFAAMHGLPSPLAGPYNGVPPAGGLAGLGGF 210
Query: 241 ------------TNDRCT--VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 286
TN + + +LVSNLN + + D LF LF +YG++ R+K+L NK D AL
Sbjct: 211 PLGAAGLGVRVPTNAQTSAVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSAL 270
Query: 287 VQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRF 339
+QM + QA LA+ + +FGK+++V SKH + T +Y NS L+RF
Sbjct: 271 IQMAEPHQAHLALTHMDKLRVFGKQIKVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLHRF 330
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
+ +KNY+ P+ +HLS +P VTEEEI ++G V F +K AL+
Sbjct: 331 KKPGSKNYQNIYPPSSTLHLSNIPTTVTEEEIRDAFTKNGFTVKAFKFFPKDRKMALIQM 390
Query: 400 ETEEQATEALVCKHA 414
+ + A AL+ K+A
Sbjct: 391 PSMDDAVAALIVKNA 405
>gi|325184968|emb|CCA19460.1| hypothetical protein SELMODRAFT_173175 [Albugo laibachii Nc14]
Length = 466
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/457 (35%), Positives = 229/457 (50%), Gaps = 48/457 (10%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN------------------QALL 46
SKV++V + +E L + + +G +K+++LR +N QAL+
Sbjct: 18 SKVLYVDKIPFYWTEETLKRNLELYGTFSKVLLLRKRNCFYSAYQESSTQRPISFIQALV 77
Query: 47 QMQDVPSAINALQFYTNVQP--TIRGRNVYVQFSSHQELTT-MEQNAQGRGDEPNRILLV 103
Q +D +A Q P T G + + F+ E+ + N+ D NRILLV
Sbjct: 78 QAEDADNAAAFTQL-CRQHPIMTEEGEPLLIDFAKVAEIRQPNDTNSSTDSDHRNRILLV 136
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
T+ + LYPIT +++ +FS G VEKIV F+K+ G Q LIQ A A+ +L G NI
Sbjct: 137 TVQNPLYPITADLMASIFSYFGKVEKIVIFEKAIGLQCLIQLSFIEDATAAKKALNGVNI 196
Query: 164 YDGCCQLDIQFSNLD-ELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFP--QM 220
+ CC L I +S L EL V N R+ DFTN NL + G +EA +A +
Sbjct: 197 FPDCCCLIIHYSKLSQELVVKTNGPRTWDFTNSNLSNQPDG-------NEADIALETCEA 249
Query: 221 ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN 280
N AA A A I + + VSNL + + D+LFNLFS YGN+ R+K +
Sbjct: 250 INKAAFATANMTNSGQEI----ETLVLFVSNLR-ESVTCDQLFNLFSCYGNVARVKKFNS 304
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYM 332
KPDHALVQ A+ A+ L+G LFG+ LE+ FSKH I T+ EY
Sbjct: 305 KPDHALVQFSTPAFAQSALLHLRGFTLFGRSLEITFSKHAYINVSAGSSKTKSTGMVEYG 364
Query: 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--TKLFEMN 390
+S NRF A + PTK++H+S L EE + +HL H ++ N KLF +
Sbjct: 365 HST-NRFTGKFAGFSKNINCPTKILHISNLDISSNEEALRAHLLIHANVSNFRLKLFAVK 423
Query: 391 GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427
G QAL F++ + AT LV H + L +R++FS
Sbjct: 424 GHSQALADFQSIDMATNTLVSAHNTLLHNRRLRVAFS 460
>gi|393904664|gb|EJD73763.1| polypyrimidine tract-binding protein 1 [Loa loa]
Length = 546
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 207/404 (51%), Gaps = 71/404 (17%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN +L V I +MLYP+T++VL+Q+FS +G V +I+TF K+ FQAL+Q SA +AR
Sbjct: 140 QPNSVLRVIIENMLYPVTLDVLYQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLAR 199
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-----EQK-------- 202
SL G+N+Y+GCC L I +S L L V YNN++SRD+TNPNLP+ EQ+
Sbjct: 200 QSLDGQNVYNGCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSLVSAAT 259
Query: 203 -GR--PSQSGYSEAGVAFP-----------QMANAAAIAAAFGG--GLPPGITGT----- 241
G+ P+ + ++ AFP Q A A A A G+ P +TG
Sbjct: 260 GGQMGPAIASLVQSPFAFPFGAANPQYAFQQQATAFPQADALASPTGISPFLTGLTTTLA 319
Query: 242 -----------------------------NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
N +LVSNLN +++ D LF LF +YG++
Sbjct: 320 SGATSPVTANAAMLNATAAALRFPHVNVLNISSVILVSNLNENKVTPDALFTLFGVYGDV 379
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD----- 327
R+K+L NK D+AL+Q + QA+LA+ L K++ V SKH N+ +
Sbjct: 380 HRVKILFNKKDNALIQYAEPQQAQLAIQHLDKVRWHDKQIRVASSKHSNVQMPKEGQPDA 439
Query: 328 --THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T +Y S+L+RF + +KNY P+ +HLS +P ++TEE + S E+ G I
Sbjct: 440 GLTRDYSQSSLHRFKKPGSKNYLNIYPPSSTLHLSNIPPNITEEFLTSAFEQRGYIPKGF 499
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F K AL+ E A AL+ H L + +R+SFS+
Sbjct: 500 KFFPKDHKMALLQLNDMETAINALIEMHNFKLAENAHLRVSFSK 543
>gi|158454983|gb|AAI03384.1| PTBP1 protein [Bos taurus]
Length = 446
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 191/367 (52%), Gaps = 79/367 (21%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP----------------------------------- 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAG 350
Query: 237 -----GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM D
Sbjct: 351 RIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMAD 409
Query: 292 GFQAELA 298
G QA+L
Sbjct: 410 GSQAQLG 416
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
DG ++AV +G+ + + P I G ++ +F ++ R
Sbjct: 2 DGIVPDIAVGTKRGS---DELFSACVTNGPFIMSGTSASTANGNDSKKFKGDS----RSA 54
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 55 GVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMV 111
Query: 411 CKHAS---SLGGSIIRISFSQLQSIRENS 436
+ S L G I I FS + ++ +S
Sbjct: 112 NYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|350583628|ref|XP_003125947.3| PREDICTED: polypyrimidine tract-binding protein 2-like [Sus scrofa]
Length = 345
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ C
Sbjct: 1 MYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNAC 60
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIA 227
C L I FS L L V YNN++SRD+T P+LP+ G+P+ AF + + A+
Sbjct: 61 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALD--PAIAAAFAKETSLLAVP 117
Query: 228 AAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYG 270
A +P PG++ + +LVSNLN + + LF LF +YG
Sbjct: 118 GALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTPQSLFTLFGVYG 176
Query: 271 NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD 327
++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +G D
Sbjct: 177 DVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLD 236
Query: 328 ----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN 383
T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G V
Sbjct: 237 DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVK 296
Query: 384 TKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 297 AFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 342
>gi|397507212|ref|XP_003824099.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Pan paniscus]
Length = 541
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 245/490 (50%), Gaps = 73/490 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V H++ ++ E +++ L PFG + L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVTHIQKXPIDVIEGEVISLELPFGKVINLLMLKGKNQAFIKMSTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+ L T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKGLKTDSSPNQARDPAAXQAVNSVQSGNLAWTAPEAAVDAGMG 176
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V K +TF K FQAL+QY +A
Sbjct: 177 MAGQSP--VLRIIVENLFYPMTLDVLHQIFSKFGTV-KTITFIKDNQFQALLQYTDPENA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
+ SL +N Y+ C L I FS L L V Y+N++SRD+ P+LP+ G S
Sbjct: 234 QHTKLSLDWQNTYNACHTLCIDFSKLISLNVKYSNDKSRDYXRPDLPS---GDSXPSLDQ 290
Query: 212 EAGVAF----PQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRID 258
VAF P + A A AAA G PG+ GT + +LVS+LN +R+
Sbjct: 291 XMAVAFDLSVPNIHGALAPXAIPSAVAAAAAAGQIAIPGLAGTGN-SVLLVSDLNPERVT 349
Query: 259 --------EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK 310
LF LFS+YG++ R+K NK ++ALVQM DG QA+LA+ L L GK
Sbjct: 350 PQTLCFCFPQSLFILFSVYGDVQRVKTPFNKKENALVQMADGNQAQLAMSHLNWHKLHGK 409
Query: 311 R---LEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ + KH N+ QG T +Y NS L+RF + KN++ P+ +HL
Sbjct: 410 PPHLIRITPLKHQNVQLPREGREDQGL-TKDYGNSPLHRFKKPGFKNFQNIFPPSATVHL 468
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG- 418
S +P V+EE++ G +V F +K AL+ + E+A + + H +
Sbjct: 469 SNIPPSVSEEDLKVLSSSLGGVVIGFKFFQKDRKMALIQMRSVEEAVQTPIALHNHDVWE 528
Query: 419 GSIIRISFSQ 428
+R+SFS+
Sbjct: 529 NHHLRVSFSK 538
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R P+++ H+ P DV E E++S G ++N L + GK QA + TEE A
Sbjct: 52 RSARVPSRVTHIQKXPIDVIEGEVISLELPFGKVIN--LLMLKGKNQAFIKMSTEE-AAN 108
Query: 408 ALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+V + S L G I I FS + ++ +S
Sbjct: 109 TMVNYYTSVTPVLRGQPIYIQFSNHKGLKTDS 140
>gi|348686489|gb|EGZ26304.1| hypothetical protein PHYSODRAFT_350288 [Phytophthora sojae]
Length = 649
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/548 (29%), Positives = 258/548 (47%), Gaps = 124/548 (22%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+ V + + E++LL L PF V+ K +M+ K QA +Q+ DV SA+N + FY
Sbjct: 24 SRVVFVCGLPADCLESELLALCCPFAVVEKSLMIPQKRQAFVQLPDVTSAVNLVTFYQTR 83
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQN----------------------------------- 89
IRG+ ++ +FS+ E+T N
Sbjct: 84 DALIRGKKIFFEFSNRNEITVRSDNDASSYQQQPPPQRATAYQQPPPMQYAPRQDMPPFR 143
Query: 90 AQG-------------RG-DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK 135
A G RG PN+IL+V++ + Y +TV+VL QVF G VEKIVTF K
Sbjct: 144 ADGGAQPGLLPQEGGRRGVGPPNQILMVSVSKIEYDVTVDVLQQVFQKFGNVEKIVTFWK 203
Query: 136 SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP 195
F+AL+Q + A A+S+L GR+IY GC QL I FS EL+V YN++RSRD+TNP
Sbjct: 204 DNEFKALVQMESVDQAQAAQSALDGRDIYTGCNQLSIVFSRHPELRVRYNDDRSRDYTNP 263
Query: 196 NL--------------------PAEQKGRPSQSGY-------------SEAGVA------ 216
NL P++++ P GY ++A A
Sbjct: 264 NLPPGPGRGGEDLGESNPVNPAPSDRREVPRDDGYNNPPPRRDDYGGPTDAPNARRDDRY 323
Query: 217 FPQMANAAAIAAAF---------------GGGLPPGITG------TNDRCTVLVSNLNSD 255
P M + + + G LPP TG T ++ SN++ +
Sbjct: 324 VPDMRDNRGPPSRYDERPPSTDRSRELRGGRELPPHSTGRAIRGDTRPSPALICSNIDRE 383
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
++ +LF LF +G+++RIK++ K D AL+Q D + A+ L G +FGK+L V+
Sbjct: 384 LVNPHRLFTLFGCFGDVLRIKIMFRKRDTALIQFVDDVHSTSALDHLDGVYVFGKKLRVD 443
Query: 316 FSKHPNITQ---GAD------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV 366
+SKH +++ AD T ++ S L+R+ R +N + SP ++H+S +P ++
Sbjct: 444 YSKHTSVSMPHADADRFEIENTLDFSGSPLHRYRR---RNPQEAVSPCPLLHISGIPMEL 500
Query: 367 TEEE--IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRI 424
+ +V ++G + N + N K AL+ + ++A AL+ + S +RI
Sbjct: 501 QRNQNALVDLFAQYGFVKNFHYLQ-NNHKMALIEMGSMDEAIMALLQLDNMAYPDSHMRI 559
Query: 425 SFSQLQSI 432
SFS+ S+
Sbjct: 560 SFSKAYSL 567
>gi|57004|emb|CAA43203.1| pyrimidine binding protein 2 [Rattus norvegicus]
Length = 367
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 198/366 (54%), Gaps = 48/366 (13%)
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
+ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ C
Sbjct: 2 LFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 61
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIA 227
C L I FS L L V YNN++SRD+T P+LP+ +PS A P + +A+ A
Sbjct: 62 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAAAFGAPGIMSASPYA 120
Query: 228 AAF----------GGGLP--------------------------PGITGTNDRCTVLVSN 251
A G +P PG+ G + +LVSN
Sbjct: 121 GAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSN 179
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
LN +R+ LF LF +YG++ R+K+L NK ++ALV+M DG QA+LA+ L G L GK
Sbjct: 180 LNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKS 239
Query: 312 LEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
+ + SKH ++ QG T +Y +S L+RF + +KN++ P+ +HLS +P
Sbjct: 240 VRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 298
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSII 422
V+E+++ S +G +V F +K AL+ + E+A +AL+ H LG +
Sbjct: 299 PSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHL 358
Query: 423 RISFSQ 428
R+SFS+
Sbjct: 359 RVSFSK 364
>gi|195354540|ref|XP_002043755.1| GM16408 [Drosophila sechellia]
gi|194128955|gb|EDW50998.1| GM16408 [Drosophila sechellia]
Length = 792
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 192/385 (49%), Gaps = 53/385 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP++++VLHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 405 PNTVLRVIVESLMYPVSLDVLHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 464
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 465 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNT 524
Query: 204 ----------RPSQSG------YSEAGVAFP---------------QMANAAAIAAAFGG 232
RPS SG GV P + N AA + A G
Sbjct: 525 NDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSG 584
Query: 233 GLPPGITGTNDRCTVL-VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
L P VL VSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 585 ALQPAAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAE 644
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA LA+ L L+GK + V SKH + T +Y + L+RF + +
Sbjct: 645 PQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGS 704
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KNY+ P+ +HLS +P +E++I + V F +K AL+ + E+
Sbjct: 705 KNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEE 764
Query: 405 ATEALVCKHASSLGGSI-IRISFSQ 428
A AL+ H L S +R+SFS+
Sbjct: 765 AVLALIKMHNHQLSESNHLRVSFSK 789
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 253 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 312
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT 85
YT P +RGR VYVQFS+H+EL T
Sbjct: 313 YTVNPPQMRGRMVYVQFSNHRELKT 337
>gi|195575404|ref|XP_002105669.1| GD16206 [Drosophila simulans]
gi|194201596|gb|EDX15172.1| GD16206 [Drosophila simulans]
Length = 792
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 192/385 (49%), Gaps = 53/385 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP++++VLHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 405 PNTVLRVIVESLMYPVSLDVLHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 464
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 465 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNT 524
Query: 204 ----------RPSQSG------YSEAGVAFP---------------QMANAAAIAAAFGG 232
RPS SG GV P + N AA + A G
Sbjct: 525 NDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSG 584
Query: 233 GLPPGITGTNDRCTVL-VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
L P VL VSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 585 ALQPAAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAE 644
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA LA+ L L+GK + V SKH + T +Y + L+RF + +
Sbjct: 645 PQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGS 704
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KNY+ P+ +HLS +P +E++I + V F +K AL+ + E+
Sbjct: 705 KNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEE 764
Query: 405 ATEALVCKHASSLGGSI-IRISFSQ 428
A AL+ H L S +R+SFS+
Sbjct: 765 AVLALIKMHNHQLSESNHLRVSFSK 789
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 57/81 (70%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + + YT
Sbjct: 257 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVN 316
Query: 65 QPTIRGRNVYVQFSSHQELTT 85
P +RGR VYVQFS+H+EL T
Sbjct: 317 PPQMRGRMVYVQFSNHRELKT 337
>gi|325187058|emb|CCA21600.1| polypyrimidine tractbinding protein putative [Albugo laibachii
Nc14]
Length = 614
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 154/528 (29%), Positives = 247/528 (46%), Gaps = 108/528 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+ V + + E++LL L PF V+ K +++ K+QA +Q+ DV SA N + FY
Sbjct: 31 SRVVFVHGLPQDCLESELLALCCPFAVVEKSLLITQKSQAFVQLPDVSSATNLINFYQTR 90
Query: 65 QPTIRGRNVYVQFSSHQELTT------------------------MEQNA---------- 90
IRG ++ ++S+ E+TT EQ A
Sbjct: 91 DAMIRGARIFFEYSNRSEITTRAGFQDDSSVEQHHTQRSNRPTTRQEQPADYDNVLRNQH 150
Query: 91 ----------QGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQ 140
+G PN IL+VT+ + Y +TV+VL QVF G V+K+VTF K+ F+
Sbjct: 151 SRSGNGASGRRGYAGAPNTILMVTVTKIEYDVTVDVLQQVFQKFGNVQKVVTFWKNEEFK 210
Query: 141 ALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE 200
AL+Q + A A+ +L GR+IY GC L I FS EL+V +NN+RS D+ NP LP
Sbjct: 211 ALVQMESIDQAQAAQQALDGRDIYTGCNTLGIVFSRHPELRVRFNNDRSWDYMNPGLPPG 270
Query: 201 QKGRPS--QSGYSEAGVA--FPQMANAAAIAAAFG------------------------- 231
S + Y E + + NA + +G
Sbjct: 271 PSADSSGPEMNYEEGPMPGMLGDVPNAQGRGSTYGPRSDFVEEQDGYMDGPRFDSRGPGP 330
Query: 232 --------GGLPPGI------TGTN-----DRCTVLV-SNLNSDRIDEDKLFNLFSLYGN 271
G +PPG TG + R VL+ SN++ + D+LF F +G+
Sbjct: 331 ERFDDEAFGHMPPGYILPPHSTGRSLRPDKRRSPVLICSNMDQKLVTPDRLFTFFGCFGD 390
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
++R+K++ K D AL+Q D F A A+ L G LF K+L V++SKH N++
Sbjct: 391 VVRVKIMFRKQDTALIQFVDDFHATSALDHLDGVYLFNKKLRVDYSKHQNVSMPRGEVDL 450
Query: 324 -QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE--IVSHLEEHGS 380
+ +T ++ S L+R+ R + + SP ++H+S +P ++ + +V + +G
Sbjct: 451 FELENTRDFSQSPLHRYRRRSPQE---AVSPCPLLHISGIPMELQRNQNALVELFQPYGF 507
Query: 381 IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
+ N + N K A++ T ++A AL+C S S +R+SFS+
Sbjct: 508 VKNFHFIKQN-NKMAIIEMATMDEAVMALLCLDNLSYPDSHMRVSFSK 554
>gi|390332442|ref|XP_003723501.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 4
[Strongylocentrotus purpuratus]
Length = 662
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 190/346 (54%), Gaps = 16/346 (4%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q+ A VA+
Sbjct: 319 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 378
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAF 217
L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP + G + A +
Sbjct: 379 LDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLP-QGDGLTGVDPSTAAMLGV 436
Query: 218 PQM-ANAAAIAAAFG----GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
P A +A+ G PG+ + +LVSNL + + LF LF +YG++
Sbjct: 437 PGFPAGLSALPHHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDV 496
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQG 325
R+K+L K D+AL+QM D Q++LA+ L G L+GK++ V SKH +
Sbjct: 497 QRVKILYEKRDNALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDA 556
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T ++ S L+RF + +KN+ P+ +HLS +P V EE + +HG++ N K
Sbjct: 557 GLTKDFSTSPLHRFKKPGSKNFLNIYPPSSTLHLSNIPPTVDEETLKEAFSQHGTVANFK 616
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
F + +K AL+ + E+A AL+ H L S +R+SFS+ Q
Sbjct: 617 FFPKD-RKMALLQMGSVEEAIHALIAMHNYQLAESNHLRVSFSKAQ 661
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 107 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 166
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT 85
T++ + GR +Y QFS H+EL T
Sbjct: 167 THMPRNVHGRQIYCQFSKHKELKT 190
>gi|390332446|ref|XP_003723503.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 6
[Strongylocentrotus purpuratus]
Length = 603
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 190/346 (54%), Gaps = 16/346 (4%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q+ A VA+
Sbjct: 260 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 319
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAF 217
L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP + G + A +
Sbjct: 320 LDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLP-QGDGLTGVDPSTAAMLGV 377
Query: 218 PQM-ANAAAIAAAFG----GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
P A +A+ G PG+ + +LVSNL + + LF LF +YG++
Sbjct: 378 PGFPAGLSALPHHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDV 437
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQG 325
R+K+L K D+AL+QM D Q++LA+ L G L+GK++ V SKH +
Sbjct: 438 QRVKILYEKRDNALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDA 497
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
T ++ S L+RF + +KN+ P+ +HLS +P V EE + +HG++ N K
Sbjct: 498 GLTKDFSTSPLHRFKKPGSKNFLNIYPPSSTLHLSNIPPTVDEETLKEAFSQHGTVANFK 557
Query: 386 LFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
F + +K AL+ + E+A AL+ H L S +R+SFS+ Q
Sbjct: 558 FFPKD-RKMALLQMGSVEEAIHALIAMHNYQLAESNHLRVSFSKAQ 602
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 48 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 107
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT 85
T++ + GR +Y QFS H+EL T
Sbjct: 108 THMPRNVHGRQIYCQFSKHKELKT 131
>gi|195055925|ref|XP_001994863.1| GH17472 [Drosophila grimshawi]
gi|193892626|gb|EDV91492.1| GH17472 [Drosophila grimshawi]
Length = 920
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 195/383 (50%), Gaps = 53/383 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F G V KIVTF K+ FQALIQY SA A+S
Sbjct: 537 PNTVLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAHSAQQAKS 596
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 597 ILDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 656
Query: 204 ----------RPSQS--GYSEAGVAFP---------------QMANAAAIAAAFGGGL-- 234
RPS + G GV P + N AA + A G L
Sbjct: 657 NDLLLIAARQRPSLTVNGLGAPGVLPPFALGLGTPLTGGYSNALPNLAAFSLANSGALQT 716
Query: 235 -PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 717 AAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQ 774
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKN 346
QA LA+ L L+GK + V SKH + T +Y + L+RF + +KN
Sbjct: 775 QAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKN 834
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y+ P+ +HLS +P TE++I + V F +K AL+ + E+A
Sbjct: 835 YQNIYPPSATLHLSNIPSSCTEDDIKEAFTSNNFEVKAFKFFPKDRKMALLQLSSVEEAV 894
Query: 407 EALVCKHASSLGGSI-IRISFSQ 428
AL+ H L S +R+SFS+
Sbjct: 895 LALIKMHNHQLSESNHLRVSFSK 917
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 63/91 (69%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 378 IAKASKVIHLRNIPNESGESDVVALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 437
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQ 91
YT P +RGR VYVQFS+H+EL T + + Q
Sbjct: 438 YTVNPPQMRGRMVYVQFSNHRELKTDQSHNQ 468
>gi|390332439|ref|XP_780392.3| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 7
[Strongylocentrotus purpuratus]
Length = 659
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 48/379 (12%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q+ A VA+
Sbjct: 282 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 341
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------------- 198
L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP
Sbjct: 342 LDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLPQGDGLTGVDPSTAAMLGFG 400
Query: 199 ---------AEQKGRP-------SQSGYSEAGV-AFPQMANA--AAIAAAFGGGLPPGIT 239
A G P S +GY +AGV FP +A AAA G PG+
Sbjct: 401 GAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALPHHAAAAAQGMRMPGMY 460
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
+ +LVSNL + + LF LF +YG++ R+K+L K D+AL+QM D Q++LA+
Sbjct: 461 MPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLAM 520
Query: 300 HFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK++ V SKH + T ++ S L+RF + +KN+
Sbjct: 521 KHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDAGLTKDFSTSPLHRFKKPGSKNFLNIYP 580
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V EE + +HG++ N K F + +K AL+ + E+A AL+
Sbjct: 581 PSSTLHLSNIPPTVDEETLKEAFSQHGTVANFKFFPKD-RKMALLQMGSVEEAIHALIAM 639
Query: 413 HASSLGGS-IIRISFSQLQ 430
H L S +R+SFS+ Q
Sbjct: 640 HNYQLAESNHLRVSFSKAQ 658
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 70 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 129
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT 85
T++ + GR +Y QFS H+EL T
Sbjct: 130 THMPRNVHGRQIYCQFSKHKELKT 153
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELA 298
G N V+V N+ + +I D L +F YG ++RI +++ ALVQ D QA +A
Sbjct: 280 GVNTILRVIVENV-TYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVA 338
Query: 299 VHFLKGALLFGK--RLEVNFSKHPNIT 323
L G ++ +L ++FSK N++
Sbjct: 339 KLELDGKNIYNNCCQLRIDFSKLTNLS 365
>gi|281362950|ref|NP_001163789.1| hephaestus, isoform Q [Drosophila melanogaster]
gi|272477266|gb|ACZ95082.1| hephaestus, isoform Q [Drosophila melanogaster]
Length = 493
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 224/492 (45%), Gaps = 113/492 (22%)
Query: 48 MQDVPSAINALQFYTNVQPTIRGRNVYVQF---------------SSHQELT-------- 84
M D SA + + YT P +RGR VYVQF ++H + +
Sbjct: 1 MADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGS 60
Query: 85 ------------------------------TMEQNAQGRGDE---PNRILLVTIHHMLYP 111
T NA G + PN +L V + ++YP
Sbjct: 61 PLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYP 120
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLD 171
+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L
Sbjct: 121 VSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLR 180
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKG-----------------------RPSQS 208
I S L L V YNN++SRDFTNP LP + G RPS S
Sbjct: 181 IDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLS 240
Query: 209 ------GYSEAGVAFP---------------QMANAAAIAAAFGGGL---PPGITGTNDR 244
G GV P + N AA + A G L P + G ++
Sbjct: 241 GDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN- 299
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
+LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L
Sbjct: 300 -VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDK 358
Query: 305 ALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
L+GK + V SKH + T +Y + L+RF + +KNY+ P+ +
Sbjct: 359 LRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATL 418
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
HLS +P +E++I + V F +K AL+ + E+A AL+ H L
Sbjct: 419 HLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQL 478
Query: 418 GGSI-IRISFSQ 428
S +R+SFS+
Sbjct: 479 SESNHLRVSFSK 490
>gi|195505570|ref|XP_002099562.1| GE23291 [Drosophila yakuba]
gi|194185663|gb|EDW99274.1| GE23291 [Drosophila yakuba]
Length = 802
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 196/383 (51%), Gaps = 53/383 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 419 PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 478
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 479 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 538
Query: 204 ----------RPSQS--GYSEAGVAFP---------------QMANAAAIAAAFGGGL-- 234
RPS + G GV P + N AA + A G L
Sbjct: 539 NDLLLIAARQRPSLTVNGLGAPGVLPPFALGLGTPLTGGYSNALPNLAAFSLANSGALQT 598
Query: 235 -PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 599 AAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQ 656
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKN 346
QA LA+ L L+GK + V SKH + T +Y + L+RF + +KN
Sbjct: 657 QAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKN 716
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y+ P+ +HLS +P +E++I + V F +K AL+ + E+A
Sbjct: 717 YQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLSSVEEAV 776
Query: 407 EALVCKHASSLGGSI-IRISFSQ 428
AL+ H L S +R+SFS+
Sbjct: 777 LALIKMHNHQLSESNHLRVSFSK 799
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 57/81 (70%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + + YT
Sbjct: 268 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVN 327
Query: 65 QPTIRGRNVYVQFSSHQELTT 85
P +RGR VYVQFS+H+EL T
Sbjct: 328 PPQMRGRMVYVQFSNHRELKT 348
>gi|390332435|ref|XP_003723499.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 631
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 48/379 (12%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q+ A VA+
Sbjct: 254 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 313
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------------- 198
L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP
Sbjct: 314 LDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLPQGDGLTGVDPSTAAMLGFG 372
Query: 199 ---------AEQKGRP-------SQSGYSEAGV-AFPQMANA--AAIAAAFGGGLPPGIT 239
A G P S +GY +AGV FP +A AAA G PG+
Sbjct: 373 GAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALPHHAAAAAQGMRMPGMY 432
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
+ +LVSNL + + LF LF +YG++ R+K+L K D+AL+QM D Q++LA+
Sbjct: 433 MPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLAM 492
Query: 300 HFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK++ V SKH + T ++ S L+RF + +KN+
Sbjct: 493 KHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDAGLTKDFSTSPLHRFKKPGSKNFLNIYP 552
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V EE + +HG++ N K F + +K AL+ + E+A AL+
Sbjct: 553 PSSTLHLSNIPPTVDEETLKEAFSQHGTVANFKFFPKD-RKMALLQMGSVEEAIHALIAM 611
Query: 413 HASSLGGS-IIRISFSQLQ 430
H L S +R+SFS+ Q
Sbjct: 612 HNYQLAESNHLRVSFSKAQ 630
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 42 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 101
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT 85
T++ + GR +Y QFS H+EL T
Sbjct: 102 THMPRNVHGRQIYCQFSKHKELKT 125
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELA 298
G N V+V N+ + +I D L +F YG ++RI +++ ALVQ D QA +A
Sbjct: 252 GVNTILRVIVENV-TYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVA 310
Query: 299 VHFLKGALLFGK--RLEVNFSKHPNIT 323
L G ++ +L ++FSK N++
Sbjct: 311 KLELDGKNIYNNCCQLRIDFSKLTNLS 337
>gi|390332437|ref|XP_003723500.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 3
[Strongylocentrotus purpuratus]
Length = 649
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 48/379 (12%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N IL V + ++ Y ITV+ LH++F +G V +IVTF KS FQAL+Q+ A VA+
Sbjct: 272 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 331
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------------- 198
L G+NIY+ CCQL I FS L L V YNNE+SRD+T +LP
Sbjct: 332 LDGKNIYNNCCQLRIDFSKLTNLSVKYNNEKSRDYTC-DLPQGDGLTGVDPSTAAMLGFG 390
Query: 199 ---------AEQKGRP-------SQSGYSEAGV-AFPQMANA--AAIAAAFGGGLPPGIT 239
A G P S +GY +AGV FP +A AAA G PG+
Sbjct: 391 GAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALPHHAAAAAQGMRMPGMY 450
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
+ +LVSNL + + LF LF +YG++ R+K+L K D+AL+QM D Q++LA+
Sbjct: 451 MPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLAM 510
Query: 300 HFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCS 352
L G L+GK++ V SKH + T ++ S L+RF + +KN+
Sbjct: 511 KHLSGVKLYGKQIRVTASKHQMVQLPKEGQPDAGLTKDFSTSPLHRFKKPGSKNFLNIYP 570
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ +HLS +P V EE + +HG++ N K F + +K AL+ + E+A AL+
Sbjct: 571 PSSTLHLSNIPPTVDEETLKEAFSQHGTVANFKFFPKD-RKMALLQMGSVEEAIHALIAM 629
Query: 413 HASSLGGS-IIRISFSQLQ 430
H L S +R+SFS+ Q
Sbjct: 630 HNYQLAESNHLRVSFSKAQ 648
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+ PS+V+H+RN+ +E + D+L L P G +TK +ML+ KNQA L+M D +A + Y
Sbjct: 60 SSPSRVVHIRNLANEALDADVLSLALPIGRVTKYLMLKGKNQAFLEMADEATAQTFINHY 119
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT 85
T++ + GR +Y QFS H+EL T
Sbjct: 120 THMPRNVHGRQIYCQFSKHKELKT 143
>gi|194904631|ref|XP_001981034.1| GG11844 [Drosophila erecta]
gi|190655672|gb|EDV52904.1| GG11844 [Drosophila erecta]
Length = 800
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 195/387 (50%), Gaps = 57/387 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 413 PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 472
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 473 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 532
Query: 204 ----------RPSQSG------YSEAGVAFP---------------QMANAAAIAAAFGG 232
RPS +G GV P + N AA + A G
Sbjct: 533 NDLLLIAARQRPSLTGDKIVNGLGAPGVLPPFALGLGTPLTGGYSNALPNLAAFSLANSG 592
Query: 233 GL---PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
L P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM
Sbjct: 593 ALQTAAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQM 650
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRN 342
+ QA LA+ L L+GK + V SKH + T +Y + L+RF +
Sbjct: 651 AEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKP 710
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+KNY+ P+ +HLS +P +EE+I V F +K AL+ +
Sbjct: 711 GSKNYQNIYPPSATLHLSNIPSSCSEEDIKEAFTSSSFEVKAFKFFPKDRKMALLQLSSV 770
Query: 403 EQATEALVCKHASSLGGSI-IRISFSQ 428
E+A AL+ H L S +R+SFS+
Sbjct: 771 EEAVLALIKMHNHQLSESNHLRVSFSK 797
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +TK+++L+ KNQA ++M D SA + +
Sbjct: 258 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTKVLVLKGKNQAFIEMADEISATSLVSC 317
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT 85
YT P +RGR VYVQFS+H+EL T
Sbjct: 318 YTVNPPQMRGRMVYVQFSNHRELKT 342
>gi|195110769|ref|XP_001999952.1| GI22798 [Drosophila mojavensis]
gi|193916546|gb|EDW15413.1| GI22798 [Drosophila mojavensis]
Length = 834
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 195/387 (50%), Gaps = 57/387 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F G V KIVTF K+ FQALIQY SA A+S
Sbjct: 447 PNTVLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAHSAQQAKS 506
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 507 ILDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 566
Query: 204 ----------RPSQSG------YSEAGVAFP---------------QMANAAAIAAAFGG 232
RPS +G GV P + N AA + A G
Sbjct: 567 NDLLLIAARQRPSLTGDKIVNGLGAPGVLPPFALGLGTPLSGGYSNALPNLAAFSLANSG 626
Query: 233 GL---PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
L P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM
Sbjct: 627 ALQTAAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQM 684
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRN 342
+ QA LA+ L L+GK + V SKH + T +Y + L+RF +
Sbjct: 685 AEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKP 744
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+KNY+ P+ +HLS +P TE++I + V F +K AL+ +
Sbjct: 745 GSKNYQNIYPPSATLHLSNIPSSCTEDDIKEAFTSNNFEVKAFKFFPKDRKMALLQLSSV 804
Query: 403 EQATEALVCKHASSLGGSI-IRISFSQ 428
E+A AL+ H L S +R+SFS+
Sbjct: 805 EEAVLALIKMHNHQLSESNHLRVSFSK 831
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 289 IAKASKVIHLRNIPNESGESDVVALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 348
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT 85
YT P +RGR VYVQFS+H+EL T
Sbjct: 349 YTVNPPQMRGRMVYVQFSNHRELKT 373
>gi|50261257|gb|AAT72299.1| polypyrimidine tract binding protein [Drosophila melanogaster]
Length = 493
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 223/492 (45%), Gaps = 113/492 (22%)
Query: 48 MQDVPSAINALQFYTNVQPTIRGRNVYVQF---------------SSHQELT-------- 84
M D SA + + YT P +RGR VYVQF ++H + +
Sbjct: 1 MADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGS 60
Query: 85 ------------------------------TMEQNAQGRGDE---PNRILLVTIHHMLYP 111
T NA G + PN +L V + ++YP
Sbjct: 61 PVPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYP 120
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLD 171
+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S L G+NIY+GCC L
Sbjct: 121 VSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLR 180
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKG-----------------------RPSQS 208
I S L L V YNN++SRDFTNP LP + G RPS S
Sbjct: 181 IDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLS 240
Query: 209 ------GYSEAGVAFP---------------QMANAAAIAAAFGGGL---PPGITGTNDR 244
G GV P + N AA + A G L P + G ++
Sbjct: 241 GDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSN- 299
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
+LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ L
Sbjct: 300 -VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDK 358
Query: 305 ALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
L+GK + V SKH + T +Y + L+RF + +KNY+ P+ +
Sbjct: 359 LRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATL 418
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
HLS +P +E++I + V F +K L+ + E+A AL+ H L
Sbjct: 419 HLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMVLLQLLSVEEAVLALIKMHNHQL 478
Query: 418 GGSI-IRISFSQ 428
S +R+SFS+
Sbjct: 479 SESNHLRVSFSK 490
>gi|198452628|ref|XP_001358876.2| GA15927, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198132005|gb|EAL28019.2| GA15927, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 785
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 196/387 (50%), Gaps = 57/387 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 398 PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 457
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 458 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 517
Query: 204 ----------RPSQS------GYSEAGVAFP---------------QMANAAAIAAAFGG 232
RPS + G GV P + N AA + A G
Sbjct: 518 NDLLLIAARQRPSLTGDKIVNGLGAPGVLPPFALGLGTQLTGGYSNALPNLAAFSLANSG 577
Query: 233 GL---PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
L P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM
Sbjct: 578 ALQTTAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQM 635
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRN 342
+ QA LA+ L L+G+ + V SKH + T +Y + L+RF +
Sbjct: 636 AEPQQAYLAMSHLDKLRLWGRPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKP 695
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+KNY+ P+ +HLS +P +E++I + V F +K AL+ +
Sbjct: 696 GSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLSSV 755
Query: 403 EQATEALVCKHASSLGGSI-IRISFSQ 428
E+A AL+ H L S +R+SFS+
Sbjct: 756 EEAVLALIKMHNHQLSESNHLRVSFSK 782
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D +A + +
Sbjct: 242 IAKASKVIHLRNIPNESGESDVIALGVPFGRVTNVLVLKGKNQAFIEMADEMAATSMVSC 301
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRI 100
YT P +RGR VYVQFS+H+EL T + + G RI
Sbjct: 302 YTVNPPQMRGRMVYVQFSNHRELKTDQSHNNSVGQSDYRI 341
>gi|390178277|ref|XP_003736615.1| GA15927, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859388|gb|EIM52688.1| GA15927, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 572
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 196/387 (50%), Gaps = 57/387 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 185 PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 244
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 245 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 304
Query: 204 ----------RPSQS------GYSEAGVAFP---------------QMANAAAIAAAFGG 232
RPS + G GV P + N AA + A G
Sbjct: 305 NDLLLIAARQRPSLTGDKIVNGLGAPGVLPPFALGLGTQLTGGYSNALPNLAAFSLANSG 364
Query: 233 GL---PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
L P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM
Sbjct: 365 ALQTTAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQM 422
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRN 342
+ QA LA+ L L+G+ + V SKH + T +Y + L+RF +
Sbjct: 423 AEPQQAYLAMSHLDKLRLWGRPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKP 482
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+KNY+ P+ +HLS +P +E++I + V F +K AL+ +
Sbjct: 483 GSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLSSV 542
Query: 403 EQATEALVCKHASSLGGSI-IRISFSQ 428
E+A AL+ H L S +R+SFS+
Sbjct: 543 EEAVLALIKMHNHQLSESNHLRVSFSK 569
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D +A + +
Sbjct: 29 IAKASKVIHLRNIPNESGESDVIALGVPFGRVTNVLVLKGKNQAFIEMADEMAATSMVSC 88
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRI 100
YT P +RGR VYVQFS+H+EL T + + G RI
Sbjct: 89 YTVNPPQMRGRMVYVQFSNHRELKTDQSHNNSVGQSDYRI 128
>gi|354498135|ref|XP_003511171.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
gi|344255182|gb|EGW11286.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 575
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 198/382 (51%), Gaps = 57/382 (14%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L + + + Y +T+EVLHQ+FS G V KI+ + K++ FQ L+QY SA A+ L
Sbjct: 197 VLRILVENYFYQVTLEVLHQLFSRFGTVLKIIIYSKNSRFQVLLQYAHPLSAQRAKLFLD 256
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-------EQK---------- 202
G+NIYD CC L I FS L +L V YNNE+SRD+T P+LP+ QK
Sbjct: 257 GQNIYDACCTLRIAFSGLTDLTVKYNNEKSRDYTRPDLPSGDSQPLPAQKMTTAFGAPVV 316
Query: 203 ---------GRPSQSGYSE--AGVAFPQMANAAA----------------IAAAFGGGLP 235
G P +S+ AG+A P++ A A + G P
Sbjct: 317 IAASPHASPGVPHTFAFSQVAAGLAMPEVCKALAPLAVPEVVVAAAAAAAESTVVTSGSP 376
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
G +LV+NLN +++ LF LF YGN+ R+K+L N+ ++ALVQM DG QA
Sbjct: 377 GGANA-----VLLVANLNPEKVTPQSLFILFGAYGNVQRVKILYNRKENALVQMADGCQA 431
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYR 348
ELA+ L G L GK L + SKH ++ +G + T +Y+NS L+RF + +KN++
Sbjct: 432 ELALKHLNGHKLHGKSLCIMPSKHLSVKLPREGKEDQGLTKDYVNSPLHRFKKPGSKNFQ 491
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
P+ +HLS LP V EE++ G V F K AL+ + E+A +A
Sbjct: 492 NIFPPSATLHLSNLPTSVLEEDLKKLFSSSGGSVKAFKFFPKDHKMALIRMGSVEEAIQA 551
Query: 409 LVCKHASSLG-GSIIRISFSQL 429
LV H LG +R+SFS++
Sbjct: 552 LVDLHGHLLGQNHHLRVSFSRI 573
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKVIH+ + + ++E ++L L PFG ++ L++L+ KNQAL++M +A + +YT
Sbjct: 27 PSKVIHIHRMPNSVTEREVLCLALPFGKVSNLMLLKGKNQALMEMSTEENANAMVNYYTW 86
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQ 91
V P +RG+ +++QFS ++EL +Q
Sbjct: 87 VTPVLRGQPIHIQFSHYKELKVSRPRSQ 114
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 332 MNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
M ++ RF RN+ R P+K+IH+ +P VTE E++ G + N L + G
Sbjct: 10 METDSKRFKRNS----RRTEGPSKVIHIHRMPNSVTEREVLCLALPFGKVSN--LMLLKG 63
Query: 392 KKQALVLFETEEQATEALVCKH---ASSLGGSIIRISFSQLQSIR 433
K QAL+ TEE A A+V + L G I I FS + ++
Sbjct: 64 KNQALMEMSTEENA-NAMVNYYTWVTPVLRGQPIHIQFSHYKELK 107
>gi|148699701|gb|EDL31648.1| mCG13402, isoform CRA_e [Mus musculus]
Length = 454
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 222/458 (48%), Gaps = 111/458 (24%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 72 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 131
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 132 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 191
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 192 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 249
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP SG S
Sbjct: 250 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP---------SGDS 300
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
+ + +AAAF +S+LN + L+G
Sbjct: 301 QPSL-------DQTMAAAFA-----------------MSHLNGHK-----------LHGK 325
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEY 331
+RI L + H VQ+ Q + + T +Y
Sbjct: 326 SVRITLSK----HQSVQLPREGQEDQGL----------------------------TKDY 353
Query: 332 MNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
+S L+RF + +KN++ P+ +HLS +P V+E+++ S +G +V F
Sbjct: 354 GSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKD 413
Query: 392 KKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 414 RKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 451
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLN 337
LR+ P +L DG ++AV +G+ + S P I M+S+ +
Sbjct: 5 LRSVPRGSLPCAMDGIVPDIAVGTKRGS---DELFSTCVSNGPFI---------MSSSAS 52
Query: 338 RFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKK 393
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK
Sbjct: 53 AANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKN 110
Query: 394 QALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
QA + TEE A + A L G I I FS + ++ +S
Sbjct: 111 QAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 155
>gi|195446082|ref|XP_002070619.1| GK10936 [Drosophila willistoni]
gi|194166704|gb|EDW81605.1| GK10936 [Drosophila willistoni]
Length = 629
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 189/374 (50%), Gaps = 52/374 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + ++YP+++++LHQ+F +G V KIVTF K+ FQALIQY SA A+S
Sbjct: 191 PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDAHSAQHAKS 250
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------------- 203
L G+NIY+GCC L I S L L V YNN++SRDFTNP LP + G
Sbjct: 251 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDLMPTAGGLMNT 310
Query: 204 ----------RPSQS--GYSEAGVAFP---------------QMANAAAIAAAFGGGL-- 234
RPS + G GV P + N AA + A G L
Sbjct: 311 NDLLLIAARQRPSLTVNGLGAPGVLPPFALGLGTPLTGGYSNTLPNLAAFSLANSGALQT 370
Query: 235 -PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM +
Sbjct: 371 SAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQ 428
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKN 346
QA LA+ L L+GK + V SKH + T +Y + L+RF + +KN
Sbjct: 429 QAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKN 488
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y+ P+ +HLS +P +E++I + V F +K AL+ + E+A
Sbjct: 489 YQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLSSVEEAV 548
Query: 407 EALVCKHASSLGGS 420
AL+ H L S
Sbjct: 549 LALIKMHNHQLSES 562
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L+ KNQA ++M D +A + +
Sbjct: 29 IAKASKVIHLRNIPNESGESDVISLGIPFGRVTNVLVLKGKNQAFIEMADEVAATSMVSC 88
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQ 91
YT P +RGR VYVQFS+H+EL T + + Q
Sbjct: 89 YTVSPPQMRGRMVYVQFSNHRELKTDQSHNQ 119
>gi|41055393|ref|NP_957393.1| heterogeneous nuclear ribonucleoprotein L [Danio rerio]
gi|28278846|gb|AAH45336.1| Zgc:55429 [Danio rerio]
gi|182890552|gb|AAI64693.1| Zgc:55429 protein [Danio rerio]
Length = 536
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 233/479 (48%), Gaps = 78/479 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + I+E DL++ Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 37 TLPSLVVHVRGLIDGITEADLVEALQEFGTISYVVLMPKKRQALVEFEDMNGASNAVTYA 96
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
N Q I GR Y+ +S+ Q+++ + R N +LL+TI + +YPIT +VL+ +
Sbjct: 97 NNNQIYIAGRPSYINYSTSQKISRPTDSDDTR--SVNNVLLLTIMNPIYPITSDVLYTIC 154
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 155 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 213
Query: 182 VNYNNERSRDFTNPNL---------------------------PAEQKGRPSQSGYSEAG 214
V N++ + D+TNPNL PA P + G + G
Sbjct: 214 VFKNDQDTWDYTNPNLSGQDADADGNWNNSQDPNANPNKRQRQPALLGDHPPEYGSPQGG 273
Query: 215 VAF--------------------PQMANAAAI----AAAFG-GGLPPGITGTNDRCTVLV 249
P + + A +G G PP D V+V
Sbjct: 274 YGHYDDTYGPPPPPPHYEGRRMGPPIGRGRGVPRYGGAQYGHGPPPPDYNAHADSPVVMV 333
Query: 250 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 309
L+ +I+ D++FN+F LYGN+ R+K +++KP A+V+MGD + + AV L +LFG
Sbjct: 334 YGLDPVKINADRVFNIFCLYGNVERVKFMKSKPGAAMVEMGDCYAVDRAVSHLNNTMLFG 393
Query: 310 KRLEVNFSKHPNITQG------------ADTHEYMNSNLNRF--NRNAAKNYRYCCSPTK 355
++L V SK I G D H Y N NRF + AAKN P+
Sbjct: 394 QKLNVCVSKQQAIMPGQSYQLEDGSCSFKDFHGYRN---NRFTTSEQAAKN--RIQQPSN 448
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLF--EMNGKKQALVLFETEEQATEALV 410
++H D + E EE G S V+ KLF +++ L+ +E+ A EAL
Sbjct: 449 VLHFFNSQPDSSVEAFSEICEELGIKSPVSVKLFTGKVDRSSSGLLEWESVNDAMEALA 507
>gi|390466248|ref|XP_003733548.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 2 [Callithrix jacchus]
Length = 499
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 230/472 (48%), Gaps = 87/472 (18%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 124
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 125 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 184
Query: 98 -NRILLVTIHHMLYPITVEVLHQ-VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +L + I +M YP+T + +FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 185 QSPVLRIIIDNMYYPVTXXXXTKXIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAK 244
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV 215
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 245 LALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA-- 301
Query: 216 AFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRID 258
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 302 AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVT 360
Query: 259 EDKLFNLFSL-YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF + YG++ R+ +L + AL+QM DG
Sbjct: 361 PQSLFTLFGIVYGDVQRVXILYIR-RRALIQMADG------------------------- 394
Query: 318 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 377
+RF + +KN++ P+ +HLS +P V EE++ +
Sbjct: 395 ----------NXXXXXXXXHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFAN 444
Query: 378 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
G V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 445 TGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 496
>gi|327262697|ref|XP_003216160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Anolis
carolinensis]
Length = 551
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/453 (30%), Positives = 227/453 (50%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +D+ S+ + F +
Sbjct: 84 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEDIESSKKCVTFAADE 143
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 144 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 198
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 199 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 257
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +MA+
Sbjct: 258 VTQNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGTHGPLLPLPSRYRMAS 317
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 318 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHPQKMNCSRVFNLFCLYGN 370
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 371 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 430
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--S 380
G ++ +++ S NRF + P+ ++H +P VTEE V ++H S
Sbjct: 431 DGTSSYKDFVMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCDDHEVLS 490
Query: 381 IVNTKLFEMNGKKQ---ALVLFETEEQATEALV 410
+ K+F+ + L+ +E + A EAL
Sbjct: 491 FIKYKVFDPKPSAKTLSGLLEWECKTDAVEALT 523
>gi|387018124|gb|AFJ51180.1| Heterogeneous nuclear ribonucleoprotein L-like [Crotalus
adamanteus]
Length = 539
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 226/453 (49%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +D+ SA + F +
Sbjct: 72 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEDIESAKKCVTFAADE 131
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 132 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 186
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 187 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 245
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +MA+
Sbjct: 246 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMAS 305
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 306 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQQKMNCSRVFNLFCLYGN 358
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 359 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 418
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--S 380
G ++ ++ S NRF + P+ ++H +P VTEE V ++H S
Sbjct: 419 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCDDHEVLS 478
Query: 381 IVNTKLFEMNGKKQ---ALVLFETEEQATEALV 410
+ K+F+ + L+ +E + A EAL
Sbjct: 479 FIKYKVFDPKPSAKTLSGLLEWECKTDAVEALT 511
>gi|351695246|gb|EHA98164.1| Heterogeneous nuclear ribonucleoprotein L [Heterocephalus glaber]
Length = 539
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 228/448 (50%), Gaps = 46/448 (10%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 36 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 95
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 96 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 153
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQ-LRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V++IV F+K+ G QA+++Y LR SA A++SL G +IY GCC L I+++ L
Sbjct: 154 NPCGPVQRIVIFRKN-GVQAMVEYPLLRNSAQRAKASLNGADIYSGCCTLKIEYAKPTRL 212
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFP-QMANAAAIAAAF------GGG 233
V N++ + D+TNPNL + SG A + P M + A G
Sbjct: 213 NVFKNDQDTWDYTNPNLSGQAHFINLGSGLCNA-IGLPVDMGEGIGVTLAVTPTNAKGSP 271
Query: 234 LPPGITGTN-----------------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIK 276
L IT N D ++V L+ +++ D++FN+F LYGN+ ++K
Sbjct: 272 LSWEITLQNMRLKLQPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVK 331
Query: 277 LLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------AD 327
+++KP A+V+M DG+ + A+ L +FG+++ V SK P I G
Sbjct: 332 FMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCS 391
Query: 328 THEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK 385
++ S NRF+ AAKN P+ ++H P +VTEE +E G T
Sbjct: 392 YKDFSESRNNRFSTPEQAAKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS 449
Query: 386 LFEMNGKKQ----ALVLFETEEQATEAL 409
+ +GK + L+ +E++ A E L
Sbjct: 450 VKVFSGKSERSSSGLLEWESKSDALETL 477
>gi|25146814|ref|NP_741042.1| Protein PTB-1, isoform b [Caenorhabditis elegans]
gi|20338919|emb|CAD30435.1| Protein PTB-1, isoform b [Caenorhabditis elegans]
Length = 453
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 193/390 (49%), Gaps = 53/390 (13%)
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G +PN +L I +M++P++++VL+Q+F+ +G V +I+TF K+ FQAL+Q SA
Sbjct: 61 GTQQQPNSVLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSA 120
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA-----EQKGRPS 206
+A+ L+ +N+Y+GCC L I +S L L V YNN++SRD+TNPNLPA EQ S
Sbjct: 121 QLAKQGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMS 180
Query: 207 QSGYSEAGVAFP-QMANAAAIAAAF----------------------------------G 231
G A P A A A F
Sbjct: 181 IPGLQNLIPANPYNFAFGANPATTFLTTQLAASTAAAAAVNDSANAAALAPYLNPLGLTS 240
Query: 232 GGLPPGITG-----TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 286
L P I+ N +LVSNL+ ++ D LF LF +YG+++R+K+L NK D+AL
Sbjct: 241 ANLAPSISSMRFPMINLTPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNAL 300
Query: 287 VQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRF 339
+Q + QA+LA+ L + + V SKH N+ + T +Y +S L+RF
Sbjct: 301 IQYSEPQQAQLALTHLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRF 360
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 399
+ +KNY P +HLS +P V+EE++ E G V F K AL
Sbjct: 361 KKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQL 420
Query: 400 ETEEQATEALVCKHASSLG-GSIIRISFSQ 428
E E A +AL+ H L + +R+SFS+
Sbjct: 421 EDIETAIDALIAMHNHKLAENAHLRVSFSK 450
>gi|33414511|ref|NP_877970.1| polypyrimidine tract-binding protein [Rattus norvegicus]
gi|29824910|gb|AAO92353.1| SMPTB [Rattus norvegicus]
gi|149028489|gb|EDL83874.1| polypyrimidine tract-binding protein [Rattus norvegicus]
Length = 588
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 200/398 (50%), Gaps = 68/398 (17%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L + + + Y +T+EVLHQ+FS G V KI+T K+ FQAL+QY SA A+ L
Sbjct: 189 VLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLD 248
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE-QKGRPSQSGYSEAGVAFP 218
G+NIYD CC L I FS L L V YNN++SRD+ P+LP++ + P Q + + P
Sbjct: 249 GQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAP 308
Query: 219 QMANAA-----------AIAAAFGGGLP-------------------------------- 235
M++A+ AI A G P
Sbjct: 309 AMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGA 368
Query: 236 --------PGITGTN--------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR 279
PG G+ +LV+NLN +++ LF LF YG++ R+K+L
Sbjct: 369 AEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILF 428
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYM 332
N+ ++ALVQM DG QAELA+ L G L+GK L + SKH ++ +G + T +Y
Sbjct: 429 NRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYA 488
Query: 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGK 392
NS L+RF + +KN++ P+ +HLS LP V+EEE+ + +G V F
Sbjct: 489 NSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNH 548
Query: 393 KQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQL 429
K AL+ + E+A +ALV H LG +R+SFS++
Sbjct: 549 KMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRM 586
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 57/89 (64%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+++H+ + ++E ++L L PFG ++ L+ LRAKNQA ++M SA + +YT
Sbjct: 26 DPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYT 85
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQ 91
+ P +RG+ V++QF+ ++EL +Q
Sbjct: 86 WMPPVLRGQPVHIQFAHYRELKVSSSPSQ 114
>gi|224046933|ref|XP_002199365.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Taeniopygia guttata]
Length = 546
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 225/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ ++V SA + F +
Sbjct: 79 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENVESAKKCVTFAADE 138
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 139 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 193
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 194 NPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 252
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 253 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 312
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 313 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 365
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 366 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 425
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--S 380
G ++ ++ S NRF + P+ ++H +P VTEE V E+H S
Sbjct: 426 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCEDHEVLS 485
Query: 381 IVNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ +E + A EAL
Sbjct: 486 FIKYKVFDPKPSAKTLSGLLEWECKTDAVEAL 517
>gi|363731463|ref|XP_414998.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Gallus
gallus]
Length = 514
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 224/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ + V SA + F +
Sbjct: 47 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEKVESAKKCVTFAADE 106
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 107 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 161
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 162 NPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 220
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 221 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 280
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 281 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 333
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 334 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 393
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--S 380
G ++ ++ S NRF + P+ ++H +P VTEE V E+H S
Sbjct: 394 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCEDHEVLS 453
Query: 381 IVNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ +E + A EAL
Sbjct: 454 FIKYKVFDPKPSAKTLSGLLEWECKTDAVEAL 485
>gi|449274548|gb|EMC83649.1| Heterogeneous nuclear ribonucleoprotein L-like protein, partial
[Columba livia]
Length = 471
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 224/452 (49%), Gaps = 62/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ ++V SA + F +
Sbjct: 6 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENVESAKKCVTFAADE 65
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 66 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 120
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++Y A A+++L G +IY GCC L I+++ L
Sbjct: 121 NPVGKVQRIVIFKRN-GIQAMVEYPF--CAQKAKAALNGADIYAGCCTLKIEYARPTRLN 177
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 178 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 237
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 238 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 290
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 291 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 350
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--S 380
G ++ ++ S NRF + P+ ++H +P VTEE V E+H S
Sbjct: 351 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCEDHEVLS 410
Query: 381 IVNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ +E + A EAL
Sbjct: 411 FIKYKVFDPKPSAKTLSGLLEWECKTDAVEAL 442
>gi|354483412|ref|XP_003503887.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cricetulus
griseus]
Length = 498
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 218/423 (51%), Gaps = 33/423 (7%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 53 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 112
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 113 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 170
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 171 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 229
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGT 241
V N++ + D+TNPNL + G P S P + G GL I
Sbjct: 230 VFKNDQDTWDYTNPNLSGQ--GNPDGSFVLNI---LPCLFTGLVHFIDLGSGLCNAIG-- 282
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
L ++ ++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+
Sbjct: 283 ------LPVDMGGPWMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITH 336
Query: 302 LKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYC 350
L +FG+++ V SK P I G ++ S NRF+ AAKN
Sbjct: 337 LNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ- 395
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQAT 406
P+ ++H P +VTEE +E G T + +GK + L+ ++++ A
Sbjct: 396 -HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDAL 454
Query: 407 EAL 409
E L
Sbjct: 455 ETL 457
>gi|328875343|gb|EGG23708.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 404
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 197/369 (53%), Gaps = 28/369 (7%)
Query: 67 TIRGRNVYVQFSSHQELTTMEQNAQGRGD-EPNRILLVTIHHMLYPITVEVLHQVFSPHG 125
T + + +Y +S Q L + ++ + + P+ ILL +I ++PI+ L+ + SP+G
Sbjct: 17 TFQNQKIYFSYSKSQHLHSSKKGSGAQTPTSPSNILLCSILTPIFPISTSTLYTIMSPYG 76
Query: 126 FVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYN 185
V +IV FQK G QA ++++ SA VA+ +L G++IY G C L I ++ + L V N
Sbjct: 77 RVLRIVIFQKK-GLQAFVEFESPYSAWVAKEALNGQDIYTGSCTLQIDYARVATLNVKQN 135
Query: 186 NERSRDFTN--PNL------PAEQKG----RPSQSGYSEAGVAFPQMANAAAIAAAFGGG 233
++++ D+T+ P P Q G P+Q + A A P M A G
Sbjct: 136 DDKTYDYTSEHPGFSLPSYSPFPQPGAPGVHPAQLDPTYAKPAGPYMMMGQQAATTMG-- 193
Query: 234 LPP--------GITGTNDRC-TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 284
+PP G G TV++ + +D + D+LFNLF LYGN+I+IK+L+
Sbjct: 194 IPPYGMYSAAPGAMGIEPPSQTVIMVHRLADSVTSDQLFNLFCLYGNVIKIKMLQGAKSG 253
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAA 344
A+VQMGDG QA+ A+H L GA +FG+RL V SKHP I++ T ++ +S LNRF +
Sbjct: 254 AMVQMGDGIQADTAIHCLNGASIFGQRLSVFHSKHPAISESDKTKDFTDSPLNRFTKGGL 313
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS-IVNT-KLFEMNGKK-QALVLFET 401
+Y+ P+ ++ +P TE+++ G+ NT K F +G K L+ F
Sbjct: 314 GSYKNIYKPSATLYFINVPTSFTEKDLTHLFINTGTHAPNTIKFFPPSGPKLMGLIEFSD 373
Query: 402 EEQATEALV 410
+ ATEAL+
Sbjct: 374 VKWATEALM 382
>gi|326915072|ref|XP_003203845.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Meleagris gallopavo]
Length = 489
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 224/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ + V SA + F +
Sbjct: 22 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEKVESAKKCVTFAADE 81
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 82 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 136
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 137 NPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 195
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 196 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPNRYRMGS 255
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 256 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 308
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 309 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 368
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--S 380
G ++ ++ S NRF + P+ ++H +P VTEE V E+H S
Sbjct: 369 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCEDHEVLS 428
Query: 381 IVNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ +E + A EAL
Sbjct: 429 FIKYKVFDPKPSAKTLSGLLEWECKTDAVEAL 460
>gi|432895625|ref|XP_004076081.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Oryzias
latipes]
Length = 529
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 227/467 (48%), Gaps = 65/467 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+H+R + + E DL+ Q FG I+ +VM+ K QAL++ +DV ++ NA+ F
Sbjct: 39 PSPVVHIRGLVDGVMEADLVDALQEFGAISYVVMMPKKRQALVEYEDVNASCNAVTFAAE 98
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q I G ++ +S+ Q+++ + R N +LL+TI + +YPIT +VL+ + +
Sbjct: 99 NQVYIAGHPAFINYSTSQKISRPGDSDDTR--SVNNVLLLTILNPIYPITTDVLYTICNN 156
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V
Sbjct: 157 CGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVF 215
Query: 184 YNNERSRDFTNPNL--------------------PAEQKGRPSQSGYSEAGVAFPQMANA 223
N++ + D+TNPNL P +++ +P+ G PQ +
Sbjct: 216 KNDQDTWDYTNPNLSSQDADGEGNWNNSQDPNANPNKRQRQPALLGDHPPDYGGPQGSYH 275
Query: 224 AAIAAAFGGGLPPGITGT-------------------------NDRCTVLVSNLNSDRID 258
A A+G P + + D ++V L +I+
Sbjct: 276 AYNDDAYGPPPPHRLNSSMGGRGRGGQRYGAGYGPPPPDYGPHADSPVLMVYGLEPSKIN 335
Query: 259 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
DK+FN+F LYGN+ R+K +++KP A+V+MGD + + A+ L LFG++L V SK
Sbjct: 336 ADKVFNIFCLYGNVERVKFMKSKPGAAMVEMGDCYSVDRAITHLNNNFLFGQKLNVCVSK 395
Query: 319 HPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVT 367
I G + ++ S NRF AAKN P+ ++H D++
Sbjct: 396 QQAIVPGQSYQLEDNTSSFKDFHGSRNNRFTSPEQAAKN--RIQHPSNVLHFFNAQPDIS 453
Query: 368 EEEIVSHLEEHG--SIVNTKLFEMNGKKQALVLFETEE--QATEALV 410
EE EE G S + KLF ++ + L E E A EAL
Sbjct: 454 EETFSQICEELGIKSPASVKLFTGKSERSSSGLLEWESINDAMEALA 500
>gi|443732513|gb|ELU17197.1| hypothetical protein CAPTEDRAFT_161728, partial [Capitella teleta]
Length = 546
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 140/488 (28%), Positives = 235/488 (48%), Gaps = 82/488 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + ++E DL+ Q FG I +++L ++ QAL++ D+ +A+N +Q+
Sbjct: 36 PSPVVHVRGLSDSVAEPDLMSSLQNFGHIGYVMILHSRRQALVEFDDINNAMNLVQYAET 95
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
+ GR + +S+ Q+++ N + + PN++LL TI + YPITV+V+H + S
Sbjct: 96 APVYVGGRIAHFNYSTSQKISRPPGNHE---ETPNKVLLFTIFNPKYPITVDVMHTIASN 152
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
+G V +IV F+K+ G Q +++++ A A+S+L G +IY GCC L I+++ L V+
Sbjct: 153 NGPVARIVIFRKN-GLQCMVEFETLEGAQRAKSALNGADIYSGCCTLKIEYAKPTRLNVS 211
Query: 184 YNNERSRDFTNPNLPAEQ---KGRP--SQSGYSEAGVAF-------PQMANAAAIAAA-- 229
N+ D+T P+ P K P ++ Y A + F P + A ++
Sbjct: 212 RNDSEMWDYTTPSGPKSDFNSKSAPLLAEPRYGSAPMPFGDGPRSRPALQPAPPQSSMDY 271
Query: 230 ---------------------------FGGGLP---------------------PGITGT 241
+GGG P G G
Sbjct: 272 GQSDSYDSYSRNDRYQEQYSPPSRHDHYGGGPPMRNHDPYGPPPSNFSDGGSQAGGPPGL 331
Query: 242 NDRCTVL-VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
+ +VL V L++D+++ ++FNLF LYGN++RIK L++K A+VQ+GD E A+
Sbjct: 332 YQQGSVLMVYGLDADKMNCQRVFNLFCLYGNVVRIKFLKSKEGTAMVQLGDPASCERAIK 391
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHE----------YMNSNLNRFNRNAAKNYRYC 350
L FGK+L++ FSK + + HE +M S NRF A +
Sbjct: 392 NLSNCFFFGKKLQLAFSKQVYLQDVHNPHELIDCSPSFVDFMGSRNNRFTNPDAASKNRI 451
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHL--EEHGSIVNTKLFEMNGKKQA--LVLFETEEQAT 406
P K +H P ++TEE+I + + K+F +K + L+ ++++ A
Sbjct: 452 NPPYKCLHYFNAPANLTEEQINQLFIDNDAKAPAKIKIFPSKSEKSSTGLLEWDSKSDAV 511
Query: 407 EALV-CKH 413
EALV C H
Sbjct: 512 EALVYCNH 519
>gi|326430347|gb|EGD75917.1| polypyrimidine tract-binding protein 1 isoform d [Salpingoeca sp.
ATCC 50818]
Length = 496
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 145/475 (30%), Positives = 230/475 (48%), Gaps = 62/475 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ + DLL + + ++M+ K QAL++M V A +
Sbjct: 30 KPSRVIHIRNLPDSATAADLLPHLMKYATPSNVIMMTNK-QALVEMPSVEVASRVI---- 84
Query: 63 NVQPTIRGRN--VYVQFSSHQELTTMEQNAQGRG-DEPNRILLVTIHHMLYPITVEVLHQ 119
+ +PTIR R+ Y+QFS HQEL + Q R + P++ L+ + ++ Y I+++ LH
Sbjct: 85 DSEPTIRIRDSQAYLQFSEHQEL----ERVQTRDTNPPSKCLIAKVTNLSYSISLQTLHS 140
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDE 179
+FS G V+K+V F K + QAL+Q SA +AR L ++IY GCC L ++FS L+E
Sbjct: 141 LFSRAGRVDKMVCFMKQSFLQALVQMDSEASAALARRMLNNQDIYSGCCHLAVEFSKLNE 200
Query: 180 LQVNYNNE--RSRDF---------TNPNLP----AEQKGRPSQSGYSEAGVAFPQMANAA 224
+ V +++ R+RDF T PN P +Q+ +G M+ A
Sbjct: 201 VTVRQDSDPARARDFIRSPLMDGETLPNTPINLQPQQQQMMGNTGAMNVMATMQGMSPAM 260
Query: 225 ----------------------AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 262
+ +A G + PG+ T C VLVSNLN I D L
Sbjct: 261 GPMGGAMGGQMPQAQAPGMPTMGMGSAMGMQMAPGMPATTPGCVVLVSNLNEATIQPDHL 320
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
F L +YG++ R+K++ ALVQ A A+ L G G +L + SK P +
Sbjct: 321 FMLCGVYGDVTRVKIMHKNRSRALVQFMLPQHAATAISNLNGLPFQGNQLRLVLSKFPEV 380
Query: 323 T------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
+ T +Y S ++RF + ++Y++ P ++HLS LP + + +
Sbjct: 381 ALPRNDEEAQLTKDYSKSKIHRF--KSQESYKHIHPPCPVLHLSRLPAEANDVYVTQLFV 438
Query: 377 EHGSIVNTKLFEM--NGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
HG K M KK A V + ++A EALV H LG ++ +R++FS+
Sbjct: 439 THG--FQPKRVHMFPEDKKMAFVELNSVQEAAEALVALHNKMLGDNLYLRVAFSR 491
>gi|37514843|gb|AAH12849.2| Hnrpll protein [Mus musculus]
Length = 594
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 224/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 127 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 186
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 187 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 241
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 242 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 300
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 301 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 360
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 361 RDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 413
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 414 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 473
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI- 381
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 474 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLP 533
Query: 382 -VNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ ++ + A EAL
Sbjct: 534 FIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 565
>gi|110347535|ref|NP_659051.3| heterogeneous nuclear ribonucleoprotein L-like [Mus musculus]
gi|62286942|sp|Q921F4.3|HNRLL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein L-like
Length = 591
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 224/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 298 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 357
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 358 RDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 410
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 411 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 470
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI- 381
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 471 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLP 530
Query: 382 -VNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ ++ + A EAL
Sbjct: 531 FIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 562
>gi|293347913|ref|XP_001063027.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Rattus
norvegicus]
gi|293359746|ref|XP_233805.5| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Rattus
norvegicus]
Length = 591
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 298 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 357
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 358 RDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 410
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 411 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 470
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI- 381
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 471 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLP 530
Query: 382 -VNTKLFEMNGKKQ---ALVLFETEEQATEALV 410
+ K+F+ + L+ ++ + A EAL
Sbjct: 531 FIKYKVFDAKASAKTLSGLLEWKCKTDAVEALT 563
>gi|343961675|dbj|BAK62427.1| heterogeneous nuclear ribonucleoprotein L-like protein [Pan
troglodytes]
Length = 513
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 219/430 (50%), Gaps = 40/430 (9%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----PSQSGYSEAGVAFPQMAN---AAAIAAAFGGG 233
V N+ S D+T P L ++G P S Y P++ A ++ GG
Sbjct: 244 VIRNDNDSWDYTKPYL--GRRGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGG 301
Query: 234 LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P G V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD +
Sbjct: 302 NPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEY 354
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAA 344
E AV L LFGKRL V SK ++ G ++ ++ S NRF
Sbjct: 355 AVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQ 414
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLF 399
+ P+ ++H +P VTEE +H + K + K A L+ +
Sbjct: 415 ASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEW 474
Query: 400 ETEEQATEAL 409
E + A EAL
Sbjct: 475 ECKTDAVEAL 484
>gi|74147193|dbj|BAE27500.1| unnamed protein product [Mus musculus]
Length = 670
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 203 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 262
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 263 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 317
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 318 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 376
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 377 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 436
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 437 RDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 489
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 490 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 549
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI- 381
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 550 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLP 609
Query: 382 -VNTKLFEMNGKKQ---ALVLFETEEQATEALV 410
+ K+F+ + L+ ++ + A EAL
Sbjct: 610 FIKYKVFDAKASAKTLSGLLEWKCKTDAVEALT 642
>gi|188528957|ref|NP_001120904.1| heterogeneous nuclear ribonucleoprotein L-like [Xenopus (Silurana)
tropicalis]
gi|183986223|gb|AAI66362.1| hnrpll protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 220/450 (48%), Gaps = 54/450 (12%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ FG I ++M+ K QAL++ +D+ + + F +
Sbjct: 64 SPVVHVRGLCESVVEADLVEALTKFGPICYVMMMPFKRQALVEFEDIEFSKKCVAFAASE 123
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPH 124
I G+ + +S+ + +T N G N++LL++I + LYPITV+VL+ V +P
Sbjct: 124 PVYIAGQQAFFNYSTSKRITRPANNEDPSGG--NKVLLLSIQNPLYPITVDVLYSVCNPV 181
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G VE+IV F+++ G QA++++ SA A+SSL G +IY GCC L I+++ L V
Sbjct: 182 GKVERIVIFKRN-GIQAMVEFDSVHSAQKAKSSLNGADIYAGCCTLKIEYARPTRLNVIR 240
Query: 185 NNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN--- 222
N+ S D++ P L +G+ Q GY G P +M +
Sbjct: 241 NDNDSWDYSKPYLSRRDRGKGRQRQAILGDHPSSYRYDGYGNHGPLLPLPNLYRMGSRDT 300
Query: 223 --------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR 274
A ++ GG P G +VS L+ +++ ++FNLF LYGNI +
Sbjct: 301 PELVAYPLPQASSSYMHGGPPVG-------SVAMVSGLHQQKMNCSRVFNLFCLYGNIEK 353
Query: 275 IKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGA 326
+K ++ P ALV+MGD + E AV L LFGKRL V SK ++ G
Sbjct: 354 VKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGT 413
Query: 327 DTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH--GSIVN 383
++ ++ S NRF + P+ ++H +P V EE E+H + +
Sbjct: 414 SSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLSVEEEMFQKLCEDHEVSTFIK 473
Query: 384 TKLFEMNGKKQ---ALVLFETEEQATEALV 410
K+F+ + L+ +E++ +A EAL
Sbjct: 474 FKVFDAKPSSKTLSGLLEWESKTEAVEALT 503
>gi|12849891|dbj|BAB28521.1| unnamed protein product [Mus musculus]
Length = 588
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 224/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 121 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 180
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 181 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 235
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 236 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 294
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 295 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 354
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 355 RDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 407
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 408 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 467
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI- 381
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 468 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLP 527
Query: 382 -VNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ ++ + A EAL
Sbjct: 528 FIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 559
>gi|395846042|ref|XP_003795724.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Otolemur
garnettii]
Length = 536
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 136/453 (30%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ ++V SA + F +
Sbjct: 69 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENVDSAKECVTFAADE 128
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 129 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 183
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 184 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 242
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 243 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 302
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 303 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 355
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 356 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 415
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 416 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 475
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 476 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 508
>gi|47087069|ref|NP_998548.1| heterogeneous nuclear ribonucleoprotein L2 [Danio rerio]
gi|32451940|gb|AAH54655.1| Heterogeneous nuclear ribonucleoprotein L [Danio rerio]
gi|182891832|gb|AAI65353.1| Hnrnpl protein [Danio rerio]
Length = 481
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 220/429 (51%), Gaps = 34/429 (7%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + + E+D+++ Q FG I+ +V++ K QAL++ +D+ + NA+ +
Sbjct: 38 TLPSLVVHVRGLVDGVLESDIVEALQEFGTISYVVLMPKKRQALVEYEDMNGSCNAVTYA 97
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ R N +LL+TI + +YPIT +VL+ +
Sbjct: 98 NDNQIYIAGHPAFVNYSTSQKISRPGDPDDAR--SVNNVLLLTIMNPIYPITSDVLYTIC 155
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 156 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 214
Query: 182 VNYNNERSRDFTNPNLPAE--QKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGIT 239
V N++ + D+TNP+L + G P +S Y G +A +G
Sbjct: 215 VFKNDQDTWDYTNPSLGTQGGYPGYPDES-YGYEGRRMGPPMSAPPPPGEYGAHA----- 268
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
D ++V L+ +I+ D++FN+F LYGN+ R+K +++KP A+V+MGD + + A+
Sbjct: 269 ---DSPVIMVYGLDPVKINADRVFNIFCLYGNVERMKFMKSKPGAAMVEMGDCYAVDRAI 325
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTH---------EYMNSNLNRFN--RNAAKNYR 348
L LF ++L + SK I G +Y S NRF AAKN
Sbjct: 326 SHLNNNFLFNQKLNLCVSKQQAIMPGQSYELDDGTNSFKDYHGSRNNRFATPEQAAKN-- 383
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNG-----KKQALVLFET 401
P+ ++H + T E EEHG + N K+F G L+ +E+
Sbjct: 384 RIQHPSNVLHFFNAVPEATPEMFTRLCEEHGVKNPSNIKIFVAKGNSPDRSSSGLLEWES 443
Query: 402 EEQATEALV 410
A EAL
Sbjct: 444 VNDAMEALA 452
>gi|116004021|ref|NP_001070368.1| heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
gi|115305250|gb|AAI23452.1| Heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
gi|296482596|tpg|DAA24711.1| TPA: heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
Length = 541
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 133
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 134 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 188
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 189 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 247
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 248 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 307
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 308 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 360
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 361 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 420
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 421 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 480
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 481 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 513
>gi|390474560|ref|XP_002757889.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Callithrix jacchus]
Length = 543
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 135
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 136 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 190
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 191 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 249
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 250 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 309
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 310 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 362
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 363 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 422
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 423 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 482
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 483 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 515
>gi|20149709|ref|NP_612403.2| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Homo
sapiens]
gi|62286941|sp|Q8WVV9.1|HNRLL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein L-like;
Short=hnRNPLL; AltName: Full=Stromal RNA-regulating
factor
gi|17028350|gb|AAH17480.1| Heterogeneous nuclear ribonucleoprotein L-like [Homo sapiens]
gi|62988915|gb|AAY24302.1| unknown [Homo sapiens]
gi|158256360|dbj|BAF84151.1| unnamed protein product [Homo sapiens]
gi|380784945|gb|AFE64348.1| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Macaca
mulatta]
gi|383409735|gb|AFH28081.1| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Macaca
mulatta]
gi|410214350|gb|JAA04394.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410253266|gb|JAA14600.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410289230|gb|JAA23215.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410329931|gb|JAA33912.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
Length = 542
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
>gi|359321615|ref|XP_003639639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Canis
lupus familiaris]
Length = 545
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 78 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 137
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 138 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 192
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 193 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 251
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 252 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 311
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 312 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 364
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 365 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 424
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 425 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 484
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 485 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 517
>gi|217416379|ref|NP_001136122.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Homo
sapiens]
gi|25988649|gb|AAN76189.1| BLOCK24 variant [Homo sapiens]
gi|67005958|gb|AAQ20084.2| stromal RNA regulating factor [Homo sapiens]
gi|383409737|gb|AFH28082.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Macaca
mulatta]
gi|384950354|gb|AFI38782.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Macaca
mulatta]
gi|410214348|gb|JAA04393.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410289228|gb|JAA23214.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
Length = 537
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 304 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 356
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 357 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 416
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 417 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 476
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 477 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 509
>gi|410035018|ref|XP_003949838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Pan
troglodytes]
Length = 513
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 218/430 (50%), Gaps = 40/430 (9%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----PSQSGYSEAGVAFPQMAN---AAAIAAAFGGG 233
V N+ S D+T P L ++G P S Y P++ A ++ GG
Sbjct: 244 VIRNDNDSWDYTKPYL--GRRGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGG 301
Query: 234 LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P G V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD +
Sbjct: 302 NPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEY 354
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAA 344
E AV L LFGKRL V SK ++ G ++ ++ S NRF
Sbjct: 355 AVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQ 414
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLF 399
+ P+ ++H +P VTEE +H + K + K A L+ +
Sbjct: 415 ASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEW 474
Query: 400 ETEEQATEAL 409
E + A EAL
Sbjct: 475 ECKTDAVEAL 484
>gi|344288860|ref|XP_003416164.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Loxodonta
africana]
Length = 489
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 221/452 (48%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 22 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADD 81
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 82 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 136
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 137 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 195
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 196 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 255
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 256 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 308
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 309 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 368
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 369 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 428
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEAL 409
K + K A L+ +E + A EAL
Sbjct: 429 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 460
>gi|417402541|gb|JAA48116.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 542
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENMDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHPLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
>gi|395859744|ref|XP_003802192.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Otolemur
garnettii]
Length = 557
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 66 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 125
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 126 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 183
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 184 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 242
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 243 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 302
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 303 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 362
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 363 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 422
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 423 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 480
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ +E++ A E L
Sbjct: 481 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWESKSDALETL 527
>gi|426226432|ref|XP_004007347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Ovis
aries]
Length = 507
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 220/452 (48%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 40 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 99
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 100 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 154
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 155 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 213
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 214 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 273
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 274 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 326
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 327 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 386
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 387 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 446
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEAL 409
K + K A L+ +E + A EAL
Sbjct: 447 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 478
>gi|410035016|ref|XP_001168474.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 4
[Pan troglodytes]
gi|426335280|ref|XP_004029156.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Gorilla
gorilla gorilla]
gi|119620773|gb|EAX00368.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_a [Homo
sapiens]
Length = 537
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 304 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 356
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 357 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 416
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 417 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 476
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 477 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 509
>gi|291386911|ref|XP_002709958.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oryctolagus cuniculus]
Length = 541
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 133
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 134 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 188
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 189 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 247
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 248 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 307
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 308 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 360
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 361 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 420
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 421 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 480
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 481 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 513
>gi|395508191|ref|XP_003758397.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Sarcophilus harrisii]
Length = 500
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 221/452 (48%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 33 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 92
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 93 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 147
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 148 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 206
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 207 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 266
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 267 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 319
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 320 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 379
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTE+ +H +
Sbjct: 380 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEDTFSKLCSDHEVLT 439
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEAL 409
K + K A L+ +E + A EAL
Sbjct: 440 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 471
>gi|355565619|gb|EHH22048.1| hypothetical protein EGK_05237 [Macaca mulatta]
Length = 542
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
>gi|194215401|ref|XP_001496787.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Equus
caballus]
Length = 509
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 227/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 77
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 78 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 135
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 136 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 194
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 195 VFRNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 254
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 255 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 314
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L+V S
Sbjct: 315 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLKVCVS 374
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 375 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 432
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 433 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 479
>gi|119620776|gb|EAX00371.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_d [Homo
sapiens]
gi|119620777|gb|EAX00372.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_d [Homo
sapiens]
Length = 542
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
>gi|432889400|ref|XP_004075258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Oryzias latipes]
Length = 490
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 218/432 (50%), Gaps = 29/432 (6%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + ++E DL++ Q FG I+ +V++ K QAL++ +D+ + A+ +
Sbjct: 34 TLPSVVVHVRGLVDGVTEADLVEALQEFGAISYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ ++++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSKKISRPGDSDDSR--SVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 210
Query: 182 VNYNNERSRDFTNPNLPA--------EQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGG 233
V N++ + D+TNPNL E G P G + +
Sbjct: 211 VFKNDQDTWDYTNPNLGGPGGYHGYDENYGSPPYEGRRMGPTMRGRGGRSYGPNYGPPPP 270
Query: 234 LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P D V+V L+ +++ D++FN+F LYGN+ R+K +++KP +V+MGD +
Sbjct: 271 PPGEYGAHADSPVVMVYGLDPVKMNADRVFNIFCLYGNVERVKFMKSKPGACMVEMGDCY 330
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 342
+ A+ L LFG++L V SK I G + ++ S NRF
Sbjct: 331 AVDRAITHLNNNFLFGQKLNVCVSKQQAIVPGQSYELEDGSSSFKDFHGSRNNRFTSPEQ 390
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA---LV 397
AAKN P+ ++H DVT E EE G S VN K+F ++ L+
Sbjct: 391 AAKN--RIQHPSNVLHFFNAQPDVTTEIFSEICEEIGVKSPVNVKMFTGKSDDRSASGLL 448
Query: 398 LFETEEQATEAL 409
+E+ A EAL
Sbjct: 449 EWESINDAMEAL 460
>gi|348563003|ref|XP_003467298.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cavia
porcellus]
Length = 586
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 272 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 331
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 332 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 391
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 392 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 451
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 452 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 509
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ +E++ A E L
Sbjct: 510 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWESKSDALETL 556
>gi|332227246|ref|XP_003262804.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Nomascus leucogenys]
Length = 542
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
>gi|32356|emb|CAA34261.1| unnamed protein product [Homo sapiens]
gi|226731|prf||1604358A nuclear RNP protein L
Length = 558
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 67 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 126
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 127 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 185 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 243
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 244 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 303
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 304 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 363
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 364 NGDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 423
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 424 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 481
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 482 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 528
>gi|440907649|gb|ELR57769.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Bos
grunniens mutus]
Length = 541
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 133
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 134 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 188
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 189 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 247
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 248 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 307
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 308 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 360
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 361 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 420
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 421 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 480
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 481 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 513
>gi|341888906|gb|EGT44841.1| CBN-PTB-1 protein [Caenorhabditis brenneri]
Length = 509
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 197/394 (50%), Gaps = 61/394 (15%)
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G +PN +L I +M++P++++VLHQ+F+ +G V +I+TF K+ FQAL+Q SA
Sbjct: 117 GTQQQPNSVLRTIIENMMFPVSLDVLHQLFARYGKVLRIITFSKNNTFQALVQMSEANSA 176
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP---------------- 195
+A++ L+ +N+Y+GCC L I +S L L V YNN++SRD+TNP
Sbjct: 177 QLAKAGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTIEQSLALS 236
Query: 196 NLPAEQKGRPSQSGYSEAGVAFPQMA-----------------------------NAAAI 226
++P Q P+ + Y+ A A P N A+
Sbjct: 237 SIPGLQNLLPA-NPYNFAFGANPATTFLTTQLAATTAAAAAANDTANAAALAPYLNPLAL 295
Query: 227 AAAFGGGLP----PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
++ +P P + T +LVSNL+ ++ D LF LF +YG+++R+K+L NK
Sbjct: 296 SSNLPSSIPQMRFPMLNLT---PVILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKK 352
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSN 335
D+AL+Q + QA+LA+ L + + V SKH N+ + T +Y +S
Sbjct: 353 DNALIQYSEPQQAQLALSHLDKVKWHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHST 412
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
L+RF + +KNY P +HLS +PQ + E++I E G V F K A
Sbjct: 413 LHRFKKPGSKNYLNIYPPCATLHLSNIPQSIGEDKIKEMFAEAGYTVKAFKFFPKDHKMA 472
Query: 396 LVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
L E E A +AL+ H L + +R+SFS+
Sbjct: 473 LCQMEDIETAIDALIKMHNHKLAENAHLRVSFSK 506
>gi|11527777|dbj|BAB18649.1| heterogeneous nuclear ribonucleoprotein L [Homo sapiens]
Length = 589
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 275 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 334
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 335 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 394
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 395 NGDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 454
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 455 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 512
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>gi|291386909|ref|XP_002709957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oryctolagus cuniculus]
Length = 547
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 80 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 139
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 140 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 194
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 195 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 253
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 254 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 313
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 314 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 366
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 367 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 426
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 427 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 486
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 487 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 519
>gi|410955434|ref|XP_003984358.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Felis catus]
Length = 544
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 77 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 136
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 137 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 191
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 192 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 250
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 251 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 310
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 311 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 363
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 364 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 423
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 424 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 483
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 484 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 516
>gi|338714336|ref|XP_001918049.2| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Equus caballus]
Length = 543
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 135
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 136 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 190
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 191 NPVGKVQRIVIFKRN-GIQAMLTFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 249
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 250 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 309
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 310 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 362
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 363 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 422
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 423 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 482
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 483 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 515
>gi|426243770|ref|XP_004015721.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Ovis aries]
Length = 598
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 107 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 166
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 167 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 224
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 225 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 283
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 284 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 343
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 344 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 403
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 404 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 463
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 464 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 521
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 522 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 568
>gi|119577230|gb|EAW56826.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_a [Homo
sapiens]
Length = 557
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 66 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 125
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 126 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 183
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 184 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 242
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 243 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 302
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 303 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 362
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 363 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 422
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 423 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 480
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 481 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 527
>gi|189053899|dbj|BAG36406.1| unnamed protein product [Homo sapiens]
Length = 558
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 67 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 126
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 127 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 185 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 243
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 244 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 303
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 304 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 363
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 364 NCDRVFNVFCLYGNVEKVKFMKSKPGSAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 423
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 424 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 481
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 482 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 528
>gi|397493589|ref|XP_003817686.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Pan paniscus]
Length = 539
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 72 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 131
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 132 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 186
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 187 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 245
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 246 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 305
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 306 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 358
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 359 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 418
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 419 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 478
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 479 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 511
>gi|343959210|dbj|BAK63460.1| heterogeneous nuclear ribonucleoprotein L [Pan troglodytes]
Length = 558
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 67 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 126
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 127 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 185 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 243
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 244 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 303
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 304 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 363
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 364 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 423
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 424 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 481
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 482 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 528
>gi|426388622|ref|XP_004060732.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Gorilla
gorilla gorilla]
Length = 589
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 275 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 334
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 335 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGXXXPPPPPPEYGPHADSPVLMVYGLDQSKM 394
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 395 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 454
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 455 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 512
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>gi|410337383|gb|JAA37638.1| heterogeneous nuclear ribonucleoprotein L [Pan troglodytes]
Length = 589
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 275 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 334
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 335 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 394
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 395 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 454
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 455 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 512
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>gi|441652820|ref|XP_004093177.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L [Nomascus leucogenys]
Length = 590
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 99 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 158
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 159 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 216
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 217 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 275
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 276 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 335
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 336 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 395
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 396 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 455
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 456 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 513
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 514 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 560
>gi|300796171|ref|NP_001178959.1| heterogeneous nuclear ribonucleoprotein L [Bos taurus]
gi|410983084|ref|XP_003997873.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Felis catus]
gi|296477716|tpg|DAA19831.1| TPA: heterogeneous nuclear ribonucleoprotein L [Bos taurus]
Length = 588
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 97 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 156
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 157 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 214
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 215 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 273
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 274 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 333
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 334 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 393
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 394 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 453
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 454 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 511
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 512 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 558
>gi|52632383|ref|NP_001524.2| heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens]
gi|388452706|ref|NP_001252929.1| heterogeneous nuclear ribonucleoprotein L [Macaca mulatta]
gi|114676995|ref|XP_512642.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform 6 [Pan
troglodytes]
gi|359318672|ref|XP_003638880.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Canis
lupus familiaris]
gi|402905454|ref|XP_003915534.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Papio anubis]
gi|215274006|sp|P14866.2|HNRPL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein L;
Short=hnRNP L
gi|119577232|gb|EAW56828.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_c [Homo
sapiens]
gi|306921585|dbj|BAJ17872.1| heterogeneous nuclear ribonucleoprotein L [synthetic construct]
gi|387542466|gb|AFJ71860.1| heterogeneous nuclear ribonucleoprotein L isoform a [Macaca
mulatta]
gi|410298568|gb|JAA27884.1| heterogeneous nuclear ribonucleoprotein L [Pan troglodytes]
Length = 589
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 275 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 334
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 335 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 394
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 395 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 454
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 455 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 512
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>gi|296233743|ref|XP_002807879.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L [Callithrix jacchus]
Length = 589
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 275 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 334
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 335 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 394
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 395 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 454
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 455 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 512
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>gi|355755804|gb|EHH59551.1| hypothetical protein EGM_09690, partial [Macaca fascicularis]
Length = 501
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/468 (29%), Positives = 227/468 (48%), Gaps = 65/468 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 9 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 68
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 69 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 126
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQ-LRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V++IV F+K+ G QA+++Y L SA A++SL G +IY GCC L I+++ L
Sbjct: 127 NPCGPVQRIVIFRKN-GVQAMVEYPLLENSAQRAKASLNGADIYSGCCTLKIEYAKPTRL 185
Query: 181 QVNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
V N++ + D+TNPNL P +++ +P G A P +
Sbjct: 186 NVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGY 245
Query: 232 GGLPPGITGTN-----------------------------------DRCTVLVSNLNSDR 256
G PP G D ++V L+ +
Sbjct: 246 GPPPPHYEGRRMGPPVGGHRRGPSPYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK 305
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V
Sbjct: 306 MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCV 365
Query: 317 SKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQD 365
SK P I G ++ S NRF+ AAKN P+ ++H P +
Sbjct: 366 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLE 423
Query: 366 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
VTEE +E G + + +GK + L+ +E++ A E L
Sbjct: 424 VTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 471
>gi|119577231|gb|EAW56827.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_b [Homo
sapiens]
Length = 590
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/468 (29%), Positives = 227/468 (48%), Gaps = 65/468 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQ-LRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V++IV F+K+ G QA+++Y L SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEYPLLENSAQRAKASLNGADIYSGCCTLKIEYAKPTRL 274
Query: 181 QVNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
V N++ + D+TNPNL P +++ +P G A P +
Sbjct: 275 NVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGY 334
Query: 232 GGLPPGITGTN-----------------------------------DRCTVLVSNLNSDR 256
G PP G D ++V L+ +
Sbjct: 335 GPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK 394
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V
Sbjct: 395 MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCV 454
Query: 317 SKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQD 365
SK P I G ++ S NRF+ AAKN P+ ++H P +
Sbjct: 455 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLE 512
Query: 366 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
VTEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 VTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 560
>gi|334313145|ref|XP_001365024.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Monodelphis
domestica]
Length = 538
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 71 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 130
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 131 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 185
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 186 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 244
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 245 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 304
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 305 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 357
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 358 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 417
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTE+ +H +
Sbjct: 418 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEDTFAKLCFDHEVLT 477
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 478 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 510
>gi|211828181|gb|AAH69184.2| HNRNPL protein [Homo sapiens]
Length = 572
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 81 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 140
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 141 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 198
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 199 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 257
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 258 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 317
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 318 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 377
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 378 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 437
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 438 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 495
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 496 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 542
>gi|348574608|ref|XP_003473082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Cavia
porcellus]
Length = 541
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 219/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 133
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 134 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 188
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 189 NPVGKVQRIVIFKRN-GIQAMFMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 247
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 248 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 307
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 308 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 360
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 361 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 420
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 421 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 480
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 481 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 513
>gi|183980004|ref|NP_796275.3| heterogeneous nuclear ribonucleoprotein L [Mus musculus]
gi|197927209|ref|NP_116008.2| heterogeneous nuclear ribonucleoprotein L isoform b [Rattus
norvegicus]
gi|215273994|sp|Q8R081.2|HNRPL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein L;
Short=hnRNP L
gi|71119320|gb|AAH99683.1| Hnrpl protein [Mus musculus]
Length = 586
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 272 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 331
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 332 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKM 391
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 392 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 451
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 452 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 509
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ ++++ A E L
Sbjct: 510 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 556
>gi|351715514|gb|EHB18433.1| Heterogeneous nuclear ribonucleoprotein L-like protein, partial
[Heterocephalus glaber]
Length = 479
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 218/452 (48%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL+ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 12 SPVVHVRGLCESVVEADLVDALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 71
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 72 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 126
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 127 NPVGKVQRIVIFKRN-GIQAMFMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 185
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 186 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 245
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 246 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 298
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 299 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 358
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 359 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 418
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEAL 409
K + K A L+ +E + A EAL
Sbjct: 419 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 450
>gi|20072624|gb|AAH27206.1| Heterogeneous nuclear ribonucleoprotein L [Mus musculus]
gi|148692161|gb|EDL24108.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_a [Mus
musculus]
gi|149056440|gb|EDM07871.1| rCG53531, isoform CRA_a [Rattus norvegicus]
Length = 555
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 64 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 123
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 124 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 181
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 182 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 240
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 241 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 300
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 301 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKM 360
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 361 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 420
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 421 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 478
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ ++++ A E L
Sbjct: 479 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 525
>gi|148692162|gb|EDL24109.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_b [Mus
musculus]
Length = 567
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 76 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 135
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 136 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 193
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 194 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 252
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 253 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 312
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 313 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKM 372
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 373 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 432
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 433 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 490
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ ++++ A E L
Sbjct: 491 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 537
>gi|197245939|gb|AAI69048.1| Hnrnpl protein [Rattus norvegicus]
Length = 571
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 80 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 139
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 140 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 197
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 198 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 256
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 257 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 316
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 317 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKM 376
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 377 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 436
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 437 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 494
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ ++++ A E L
Sbjct: 495 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 541
>gi|158257950|dbj|BAF84948.1| unnamed protein product [Homo sapiens]
Length = 537
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 304 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 356
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 357 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 416
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++ +P VTEE +H +
Sbjct: 417 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLRYYNVPLCVTEETFTKLCNDHEVLT 476
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 477 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 509
>gi|109102685|ref|XP_001109971.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Macaca mulatta]
Length = 537
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 304 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 356
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL + SK ++
Sbjct: 357 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLIFSVSKQHSVVPSQIFELE 416
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 417 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 476
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 477 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 509
>gi|354488933|ref|XP_003506620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cricetulus
griseus]
Length = 576
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 226/459 (49%), Gaps = 67/459 (14%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 102 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 161
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 162 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 216
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQL---RPSAVV----ARSSLQGRNIYDGCCQLDIQF 174
+P G V++IV F+++ G QA+++Y L R +V+ A+++L G +IY GCC L I++
Sbjct: 217 NPVGKVQRIVIFKRN-GIQAMVEYPLFSFRFESVLCAQKAKAALNGADIYAGCCTLKIEY 275
Query: 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-- 218
+ L V N+ S D+T P L +G+ Q GY G P
Sbjct: 276 ARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLP 335
Query: 219 ---QMAN-----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
+M + A ++ GG P G V+VS L+ +++ ++FN
Sbjct: 336 SRYRMGSRDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFN 388
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT- 323
LF LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 389 LFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVP 448
Query: 324 -------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
G ++ ++ S NRF + P+ ++H +P VTEE
Sbjct: 449 SQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLC 508
Query: 376 EEHGSI--VNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+H + + K+F+ + L+ ++ + A EAL
Sbjct: 509 NDHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 547
>gi|109102683|ref|XP_001109932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Macaca mulatta]
Length = 542
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 220/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL + SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLIFSVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
>gi|291390016|ref|XP_002711505.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Oryctolagus
cuniculus]
Length = 586
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 229/467 (49%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 272 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 331
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 332 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 391
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 392 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 451
Query: 318 KHPNIT--------QGADTH-EYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G+ ++ ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 452 KQPAIMPRQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 509
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ +E++ A E L
Sbjct: 510 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWESKSDALETL 556
>gi|440910313|gb|ELR60121.1| Heterogeneous nuclear ribonucleoprotein L, partial [Bos grunniens
mutus]
Length = 512
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 227/468 (48%), Gaps = 65/468 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 20 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 79
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 80 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 137
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPS-AVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V++IV F+K+ G QA+++Y L + A A++SL G +IY GCC L I+++ L
Sbjct: 138 NPCGPVQRIVIFRKN-GVQAMVEYPLLGNGAQRAKASLNGADIYSGCCTLKIEYAKPTRL 196
Query: 181 QVNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
V N++ + D+TNPNL P +++ +P G A P +
Sbjct: 197 NVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGY 256
Query: 232 GGLPPGITGTN-----------------------------------DRCTVLVSNLNSDR 256
G PP G D ++V L+ +
Sbjct: 257 GPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK 316
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V
Sbjct: 317 MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCV 376
Query: 317 SKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQD 365
SK P I G ++ S NRF+ AAKN P+ ++H P +
Sbjct: 377 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLE 434
Query: 366 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
VTEE +E G + + +GK + L+ +E++ A E L
Sbjct: 435 VTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 482
>gi|392341647|ref|XP_003754390.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Rattus norvegicus]
gi|392349693|ref|XP_003750446.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Rattus norvegicus]
Length = 558
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 144/479 (30%), Positives = 224/479 (46%), Gaps = 80/479 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQM----QDVPSAINALQ 59
PS+ IHV + +++E +++ L PFG +T L+ML+ KNQA +M +D + +N
Sbjct: 55 PSRDIHVCKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFTEMNTEEEDANTVVN--- 111
Query: 60 FYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---------------------- 97
+ T+V+P + + Y+ FS+H+EL T Q R
Sbjct: 112 YXTSVEPVLCRQPTYIXFSNHEELKTHSSPNQARVQAALQAVNSIQSGNLASAASTAAVD 171
Query: 98 --------NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRP 149
+ +L + + ++ YP+T++VLHQ+FS G + K++ F K+ FQAL+Q
Sbjct: 172 AKMVMAGQSSVLRIIVENLFYPVTLDVLHQIFSKFGTILKLIMFTKNNQFQALLQDAGPV 231
Query: 150 SAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--- 206
S A+ SL G+NIY C L I FS L L V YNN++SRD+ P LP+ +PS
Sbjct: 232 STQHAKLSLDGQNIYSACXTLHIDFSKLTSLNVKYNNDKSRDYRQPGLPSGDS-QPSVDQ 290
Query: 207 -----------QSGYSEAGVAFPQMANAAAIAAAFGGGL-----------------PPGI 238
S AG FP + G L PG+
Sbjct: 291 TMAAVFGTLSIMSVSQYAGARFPPTFAIPXVPNVHGTLLPPAIPSAAAATAAGRIAIPGL 350
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
TG + +LV+NLN +R+ LF LFS+Y ++ K+L +K +++LVQM G QA+LA
Sbjct: 351 TGAGNS-ILLVNNLNPERVTLQSLFILFSVYVDVRWSKILFSKEENSLVQMAXGSQAQLA 409
Query: 299 VHFLKGALLFGKRLEVNFSKH-----PNITQGADTHEYMNSNLNRFNRNAAKNYR--YCC 351
+ L GK + + SKH P QG D +S L+ F + +K + + C
Sbjct: 410 ISHXNRHKLHGKSVRITLSKHXSVQLPCEGQG-DQGLTKDSPLHCFKKPGSKYFLNIFPC 468
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
S T HLS +P +E+ S + F +K A + + E+A +AL+
Sbjct: 469 SATP--HLSNIPPSASEDNFKSLFSGNAGAFKGFKFFQKVRKMAXIQMGSVEEAVQALM 525
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P++ IH+ LP DVTE E++S G + N L
Sbjct: 30 MSSSASAANGNDSKKFKGDHRSIGVPSRDIHVCKLPSDVTEGEVISLGLPFGKVTN--LL 87
Query: 388 EMNGKKQALVLFETEEQATEALV 410
+ GK QA TEE+ +V
Sbjct: 88 MLKGKNQAFTEMNTEEEDANTVV 110
>gi|158254346|gb|AAI54329.1| Hnrnpl protein [Danio rerio]
Length = 522
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 223/464 (48%), Gaps = 63/464 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + + E+D+++ Q FG I+ +V++ K QAL++ +D+ + NA+ +
Sbjct: 38 TLPSLVVHVRGLVDGVLESDIVEALQEFGTISYVVLMPKKRQALVEYEDMNGSCNAVTYA 97
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ R N +LL+TI + +YPIT +VL+ +
Sbjct: 98 NDNQIYIAGHPAFVNYSTSQKISRPGDPDDAR--SVNNVLLLTIMNPIYPITSDVLYTIC 155
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 156 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 214
Query: 182 VNYNNERSRDFTNPNL----------------------PAEQKGRPSQSGYSEAGVAFPQ 219
V N++ + D+TNP+L P E G P GY + +
Sbjct: 215 VFKNDQDTWDYTNPSLGTQDMNANPNKRQRQPALLGDHPPEYGGYP---GYPDESYGYEG 271
Query: 220 MANAAAIAAAFGGGLPPGITGT---------------NDRCTVLVSNLNSDRIDEDKLFN 264
++A GG + D ++V L+ +I+ D++FN
Sbjct: 272 RRMGPPMSAPRRGGASQRYSAQYGGPPPPPPGEYGAHADSPVIMVYGLDPVKINADRVFN 331
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ 324
+F LYGN+ R+K +++KP A+V+MGD + + A+ L LF ++L + SK I
Sbjct: 332 IFCLYGNVERVKFMKSKPGAAMVEMGDCYAVDRAISHLNNNFLFNQKLNLCVSKQQAIMP 391
Query: 325 GADTH---------EYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
G +Y S NRF AAKN P+ ++H + T E
Sbjct: 392 GQSYELDDGTNSFKDYHGSRNNRFATPEQAAKN--RIQHPSNVLHFFNAVPEATPEMFTR 449
Query: 374 HLEEHG--SIVNTKLFEMNG-----KKQALVLFETEEQATEALV 410
EEHG + N K+F G L+ +E+ A EAL
Sbjct: 450 LCEEHGVKNPSNIKIFVAKGNSPDRSSSGLLEWESVNDAMEALA 493
>gi|348522989|ref|XP_003449006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oreochromis niloticus]
Length = 492
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 220/439 (50%), Gaps = 39/439 (8%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + ++E DL++ Q FG I+ +V++ K QAL++ +D+ + A+ +
Sbjct: 34 TLPSVVVHVRGLVDGVTEADLVEALQEFGAISYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ Q+++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSQKISRPGDSDDSR--TVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 210
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGT 241
V N++ + D+TNPNL G GY E+ + P GG G
Sbjct: 211 VFKNDQDTWDYTNPNL----GGPGGYHGYDESYGSPPYEGRRMGPPMRGRGGRSYGPGYG 266
Query: 242 N------------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
D V+V L+ +++ D++FN+F LYGN+ R+K +++KP A+V+M
Sbjct: 267 PPPPPPGEYGAHADSPVVMVYGLDPVKMNADRVFNIFCLYGNVERVKFMKSKPGAAMVEM 326
Query: 290 GDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN 340
GD + + A+ L LFG++L V SK I G + E+ S NRF
Sbjct: 327 GDCYAVDRAITHLNNNFLFGQKLNVCVSKQQAIVPGQCYELEDGTSSFKEFHGSRNNRFT 386
Query: 341 --RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLF-----EMNG 391
AAKN P+ ++H + T E +E G + VN K+F +
Sbjct: 387 SPEQAAKN--RIQHPSNVLHFFNAQPEATPEIFSQICDEIGVKAPVNVKMFTGKTAPSDR 444
Query: 392 KKQALVLFETEEQATEALV 410
L+ +E+ A EAL
Sbjct: 445 SASGLLEWESINDAMEALA 463
>gi|297307105|ref|NP_001167465.1| heterogeneous nuclear ribonucleoprotein L [Xenopus laevis]
gi|50416457|gb|AAH77493.1| Unknown (protein for MGC:82601) [Xenopus laevis]
Length = 538
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/465 (29%), Positives = 226/465 (48%), Gaps = 63/465 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+HVR + + E DL + Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 47 TAASPVVHVRGLIDGVVETDLAEALQEFGAISYVVVMPKKRQALVEFEDINGACNAVNYA 106
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNA-QGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+ Q + G +V +S+ Q+++ A RG N +LL+TI + +Y IT +VL+ +
Sbjct: 107 ADNQIYVAGHPAFVNYSTSQKISRPTDTADDSRGV--NNVLLLTILNPIYSITTDVLYTI 164
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G VE+IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 165 CNPCGPVERIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPSRL 223
Query: 181 QVNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMA-NAAAIAAAF 230
V N++ + D+TNP L P +++ P G A P + A+
Sbjct: 224 NVFKNDQDTWDYTNPGLSGQGDAAGNPNKRQRNPPLLGDHPAEYGGPHAGYHGHYHEEAY 283
Query: 231 GGGLP--------PGITGTNDRC-------------------------TVLVSNLNSDRI 257
G P P G R ++V L+ ++
Sbjct: 284 GPPPPHYESRRMGPPPVGAPRRGPSRYAPQYGHPPPPPPEYAPHADSPVLMVYGLDPSKL 343
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + AV L +FG++L V S
Sbjct: 344 NCDRVFNIFCLYGNLEKVKFMKSKPGAAMVEMADGYAVDRAVTHLNNNFMFGQKLSVCVS 403
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K +I G + S NRF AAKN P+ ++H P DV
Sbjct: 404 KQQSIVPGQSYGLEDGSCSFKVFSGSRNNRFTSAEQAAKN--RIQQPSSVLHFFNAPPDV 461
Query: 367 TEEEIVSHLEEHG--SIVNTKLFEMNGKKQALVLFETEEQATEAL 409
TE+ + +E G + K+F ++ + L E + + +EAL
Sbjct: 462 TEDNFIEMCDELGVKKPASIKIFSGKSERSSSGLLEWDSK-SEAL 505
>gi|294909465|ref|XP_002777772.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239885734|gb|EER09567.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 632
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 137/475 (28%), Positives = 214/475 (45%), Gaps = 68/475 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PSKV++VRNV ++E D++ FG + +++LR K ++ +D SAI +Y
Sbjct: 56 QPSKVLYVRNVPESVTEQDIIAYCLTFGRVVNILLLRDKRHGFIEFEDESSAIKCYTYYN 115
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
I G + FS E+T + PNRILL TI +++YP+TV+V+ QV +
Sbjct: 116 ANPLLITGHRLEFAFSGRSEITARRDP---DSNPPNRILLFTITNLVYPVTVDVISQVMN 172
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
G +EK++ F + QAL+Q +A VA+ L G+NIY GC + +Q+S+L +L+V
Sbjct: 173 KFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEV 232
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN 242
+NNERS DFTNP+L G EAG + + A GG P +
Sbjct: 233 KHNNERSWDFTNPSL---------LPGGMEAGSGLTPLHQQQMLGGAAGGQSPANLMANF 283
Query: 243 DRC---------------------------------TVLVSNLNSDRIDEDKLFNLFSLY 269
+ V+V LN D L LF++Y
Sbjct: 284 NYVQAMNALSQANLQNPSAAMAAAAAALQASMGAAPVVIVHGLNEQETRPDDLAALFAVY 343
Query: 270 GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-----HPNITQ 324
GN++R+K++ ALVQM + A+ LKG L G +L + SK P
Sbjct: 344 GNVVRVKIMFKARHTALVQMQTVGECHTAIAHLKGIRLHGNKLTMEMSKGGRELPPIPPP 403
Query: 325 GADTHEYMNSNLNRFNRN-AAKNYRYC----------CSPTKMIHLSTLPQDVTEEEIVS 373
GA+ E +R +R+ +++Y Y P+ ++ S +P TEE++
Sbjct: 404 GAEQTE-----ADRLSRDYTSQSYLYARHRADQTSRPFPPSSSLYFSNMPHGTTEEDLRE 458
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG--GSIIRISF 426
L+ G F A+V + + A E L HA +G +R+ F
Sbjct: 459 LLDASGCQYTGIRFLNEQHHMAIVQCISLDNAIETLCRAHAKPVGHPPRPVRVGF 513
>gi|432114048|gb|ELK36095.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Myotis
davidii]
Length = 628
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 220/457 (48%), Gaps = 65/457 (14%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 172 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 231
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 232 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 286
Query: 122 SPHGFVEKIVTFQKSAGFQALIQ-----YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
+P G V++IV F+++ G QA+I ++ A A+++L G +IY GCC L I+++
Sbjct: 287 NPVGKVQRIVIFKRN-GIQAMISLIELMFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 345
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP---- 218
L V N+ S D+T P L +G+ Q GY G P
Sbjct: 346 PTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSR 405
Query: 219 -QMAN-----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLF 266
+M + A ++ GG P G V+VS L+ +++ ++FNLF
Sbjct: 406 YRMGSRDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHPLKMNCSRVFNLF 458
Query: 267 SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--- 323
LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 459 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQ 518
Query: 324 -----QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 377
G ++ ++ S NRF + P+ ++H +P VTEE +
Sbjct: 519 IFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCND 578
Query: 378 HGSIVNTKLFEMNGKKQA-----LVLFETEEQATEAL 409
H + K + K A L+ +E + A EAL
Sbjct: 579 HEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 615
>gi|444730196|gb|ELW70586.1| Regulator of differentiation 1 [Tupaia chinensis]
Length = 386
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 126/363 (34%), Positives = 194/363 (53%), Gaps = 50/363 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 24 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 83
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
V P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 84 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPSSEGPVL 143
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 144 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 203
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-QSGYSEA 213
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +S + A
Sbjct: 204 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLESPMAAA 262
Query: 214 -GVAFPQMANA----AAIAAAFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLF---- 263
G++ P + A A ++A G + PG +G +LV+NLN D I LF
Sbjct: 263 FGLSVPTVPGALGPLAITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFV 322
Query: 264 ----NLFSLYGNIIR-IKLLRNKPDHALVQMG---DGFQAELAVHFLKGALLFGKRLEVN 315
NLF G ++ K + AL+Q+G + QA + +H L L V+
Sbjct: 323 DDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH--NHDLGENHHLRVS 380
Query: 316 FSK 318
FSK
Sbjct: 381 FSK 383
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 332 MNSNLNRFNRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
MNS+ + N N K + R CSP++++HL +P DVTE E++S G + N L
Sbjct: 1 MNSSTSTANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLM 58
Query: 389 MNGKKQALVLFETEEQA 405
+ GK QA + +EE A
Sbjct: 59 LKGKSQAFLEMASEEAA 75
>gi|335308902|ref|XP_003361415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Sus
scrofa]
Length = 552
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 219/452 (48%), Gaps = 59/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 86 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 145
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 146 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 200
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 201 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 259
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 260 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 319
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 320 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 372
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR-------LEVNFSKHPNITQ 324
I ++K ++ P ALV+MGD + E AV L LFGKR L V S+ +
Sbjct: 373 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNXXSKQLSVVPSQIFELED 432
Query: 325 GADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN 383
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 433 GTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTF 492
Query: 384 TKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 493 IKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 524
>gi|348524683|ref|XP_003449852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oreochromis niloticus]
Length = 518
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/456 (28%), Positives = 222/456 (48%), Gaps = 54/456 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+H+R + + E DL++ Q FG I+ +VM+ K QAL++ +D+ + NA+ +
Sbjct: 39 PSPVVHIRGLVDGVMEADLVEALQEFGTISFVVMMPKKRQALVEYEDMNGSCNAVTYAAE 98
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q I G ++ +S+ Q+++ + R N +LL+TI + +YPIT +VL+ + +
Sbjct: 99 NQVYIAGHPAFINYSTSQKISRPGDSDDTR--SVNNVLLLTIINPIYPITTDVLYTICNN 156
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V
Sbjct: 157 CGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPARLNVF 215
Query: 184 YNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL 234
N++ + D+TNPNL P +++ +P+ G PQ ++G
Sbjct: 216 KNDQDTWDYTNPNLSGQGDPNANPNKRQRQPALLGDHPPDYGGPQGGYHGYNDDSYGPPP 275
Query: 235 PPGITGTN-------------------------DRCTVLVSNLNSDRIDEDKLFNLFSLY 269
P + D ++V L +I+ DK+FN+F LY
Sbjct: 276 PHRMGPGMGGRGRGNQRYGPGYGPPPPEYGPHADSPVLMVYGLEPSKINADKVFNIFCLY 335
Query: 270 GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG---- 325
GN+ R+K +++KP A+V+MGD + + A+ L LFG++L V SK I G
Sbjct: 336 GNVERVKFMKSKPGAAMVEMGDCYSVDRAITHLNNNFLFGQKLNVCVSKQQAIVPGQCYQ 395
Query: 326 -----ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH 378
+ ++ S NRF AAKN P+ ++H D++ E +E
Sbjct: 396 LEDNTSSFKDFHGSRNNRFTSPEQAAKN--RIQHPSNVLHFFNAQPDISAEIFNQVCDEL 453
Query: 379 GSIVNTKLFEMNGKKQ----ALVLFETEEQATEALV 410
G T + GK + L+ +E+ A EAL
Sbjct: 454 GIKRPTSVKLFTGKSERSSSGLLEWESINDAMEALA 489
>gi|149392187|gb|ABR25946.1| ab1 polypyrimidine tract-binding protein [Oryza sativa Indica
Group]
Length = 121
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 105/121 (86%)
Query: 312 LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 371
LEVN+SK+PNIT D H+Y S+LNRFN N KNYR+CC+PTKMIH+S LPQ++TE+ I
Sbjct: 1 LEVNYSKYPNITSAPDAHDYTTSSLNRFNSNVIKNYRHCCAPTKMIHISALPQEITEDAI 60
Query: 372 VSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431
++H+ EHGS+VNTKLFE+NGK+QAL+ FE+EE+ATEALV KHA+SL G+ IRISFSQ+QS
Sbjct: 61 LNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATEALVSKHATSLEGNTIRISFSQMQS 120
Query: 432 I 432
I
Sbjct: 121 I 121
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
P+K+IH+ + EI+E+ +L G + TKL + K QAL+Q + A AL
Sbjct: 42 PTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATEAL--V 99
Query: 62 TNVQPTIRGRNVYVQFSSHQEL 83
+ ++ G + + FS Q +
Sbjct: 100 SKHATSLEGNTIRISFSQMQSI 121
>gi|90085391|dbj|BAE91436.1| unnamed protein product [Macaca fascicularis]
Length = 352
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 167/328 (50%), Gaps = 62/328 (18%)
Query: 53 SAINALQFYTNVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRG 94
+A+ + +YT + P +R + VY+Q+S+H+EL T ++ +
Sbjct: 6 AAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALS 65
Query: 95 DEPNR----------ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
P+ +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+Q
Sbjct: 66 GGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQ 125
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
Y +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+
Sbjct: 126 YADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQ 184
Query: 205 PS-----QSGYSEAGVAFPQMANAAAIAAAFG-------------GGLP----------- 235
PS + + G+ A AA A A G G L
Sbjct: 185 PSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTG 244
Query: 236 ----PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
PG +G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D
Sbjct: 245 RMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMAD 304
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKH 319
QA LA++ L G L+GK L SKH
Sbjct: 305 ANQARLAMNHLSGQRLYGKVLRATLSKH 332
>gi|432889396|ref|XP_004075256.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oryzias latipes]
Length = 519
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 224/464 (48%), Gaps = 62/464 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + ++E DL++ Q FG I+ +V++ K QAL++ +D+ + A+ +
Sbjct: 34 TLPSVVVHVRGLVDGVTEADLVEALQEFGAISYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ ++++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSKKISRPGDSDDSR--SVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 210
Query: 182 VNYNNERSRDFTNPNLP------AEQKGRPSQSGY-----SEAGVAFPQMANAAAIAAAF 230
V N++ + D+TNPNL A RP Q E G +
Sbjct: 211 VFKNDQDTWDYTNPNLGGPEDMNANPNKRPRQPALLGDHPPEYGGGYHGYDENYGSPPYE 270
Query: 231 GGGLPPGITGTNDRC----------------------TVLVSNLNSDRIDEDKLFNLFSL 268
G + P + G R V+V L+ +++ D++FN+F L
Sbjct: 271 GRRMGPTMRGRGGRSYGPNYGPPPPPPGEYGAHADSPVVMVYGLDPVKMNADRVFNIFCL 330
Query: 269 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG--- 325
YGN+ R+K +++KP +V+MGD + + A+ L LFG++L V SK I G
Sbjct: 331 YGNVERVKFMKSKPGACMVEMGDCYAVDRAITHLNNNFLFGQKLNVCVSKQQAIVPGQSY 390
Query: 326 ------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 377
+ ++ S NRF AAKN P+ ++H DVT E EE
Sbjct: 391 ELEDGSSSFKDFHGSRNNRFTSPEQAAKN--RIQHPSNVLHFFNAQPDVTTEIFSEICEE 448
Query: 378 HG--SIVNTKLFEMNGKKQA---------LVLFETEEQATEALV 410
G S VN K+F GK A L+ +E+ A EAL
Sbjct: 449 IGVKSPVNVKMF--TGKSGAAPSDRSASGLLEWESINDAMEALA 490
>gi|432889398|ref|XP_004075257.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oryzias latipes]
Length = 526
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 225/469 (47%), Gaps = 65/469 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + ++E DL++ Q FG I+ +V++ K QAL++ +D+ + A+ +
Sbjct: 34 TLPSVVVHVRGLVDGVTEADLVEALQEFGAISYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ ++++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSKKISRPGDSDDSR--SVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 210
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFP-----QMANAAAIAAAFGGG--- 233
V N++ + D+TNPNL +E A P Q A +GGG
Sbjct: 211 VFKNDQDTWDYTNPNLGGPDGDADGNGSSAEDMNANPNKRPRQPALLGDHPPEYGGGYHG 270
Query: 234 --------------LPPGITGTNDRC----------------------TVLVSNLNSDRI 257
+ P + G R V+V L+ ++
Sbjct: 271 YDENYGSPPYEGRRMGPTMRGRGGRSYGPNYGPPPPPPGEYGAHADSPVVMVYGLDPVKM 330
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ R+K +++KP +V+MGD + + A+ L LFG++L V S
Sbjct: 331 NADRVFNIFCLYGNVERVKFMKSKPGACMVEMGDCYAVDRAITHLNNNFLFGQKLNVCVS 390
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K I G + ++ S NRF AAKN P+ ++H DV
Sbjct: 391 KQQAIVPGQSYELEDGSSSFKDFHGSRNNRFTSPEQAAKN--RIQHPSNVLHFFNAQPDV 448
Query: 367 TEEEIVSHLEEHG--SIVNTKLFEMNGKKQA---LVLFETEEQATEALV 410
T E EE G S VN K+F ++ L+ +E+ A EAL
Sbjct: 449 TTEIFSEICEEIGVKSPVNVKMFTGKSDDRSASGLLEWESINDAMEALA 497
>gi|410910584|ref|XP_003968770.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Takifugu rubripes]
Length = 514
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/492 (28%), Positives = 234/492 (47%), Gaps = 78/492 (15%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + +E DL + FG I+ +V++ K QAL++ D+ + A+ F
Sbjct: 34 TLPSVVVHVRGLVDGXTEGDLCDALKEFGEISYVVLMPKKRQALVEYADMNGSFTAVTFA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ Q+++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSQKISRPGDSDDSR--SVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 210
Query: 182 VNYNNERSRDFTNPNL--PAEQKGRPSQSGYSEA--GVAFPQMANAAAIAAAFGGG---- 233
V N++ + D+TNPNL P + P++ A G P+ +GGG
Sbjct: 211 VFKNDQETWDYTNPNLGGPEDVNANPNKRQRQPALLGDHPPE----------YGGGYHGY 260
Query: 234 ----------LPPGITGTNDRC----------------------TVLVSNLNSDRIDEDK 261
+ P + G R V++ L+ +++ D+
Sbjct: 261 DENYGYEGRRMGPPMRGRGGRSYGPGYGPPPPPPGEYGSHAESPVVMLYGLDPQKMNADR 320
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
+FN+F LYGN+ R+K +++KP A+V+MGD + + A+ L LFG+++ V SK
Sbjct: 321 IFNIFCLYGNVERVKFMKSKPGAAMVEMGDCYAVDRAITHLNNTYLFGQKINVCVSKQQA 380
Query: 322 ITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
I G + ++ S NRF AAKN P+ ++H DVT E
Sbjct: 381 IVPGQCYELEDGSSSFKDFHGSRNNRFASPEQAAKN--RIQHPSNVLHFFNAQPDVTPEL 438
Query: 371 IVSHLEEHG--SIVNTKLFEMNGKKQ----ALVLFETEEQATEALVC------KHASSLG 418
EE G + VN K+F L+ +E+ A EAL K+A+
Sbjct: 439 FSQICEEIGVKAPVNVKMFTGKAPSDRSASGLLEWESVSDAMEALALINHYQMKNATGPY 498
Query: 419 GSIIRISFSQLQ 430
+++ FS +Q
Sbjct: 499 PYTLKLCFSTVQ 510
>gi|126329101|ref|XP_001362792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Monodelphis
domestica]
Length = 607
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 223/467 (47%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 116 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDILGACNAVNYA 175
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ R N +LL TI + +Y IT +VL+ +
Sbjct: 176 ADNQIYIAGHPAFVNYSTSQKISRPGDTDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 233
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 234 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 292
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 293 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 352
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 353 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 412
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 413 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 472
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 473 KQQAIMPGQSYGLEDGSCSYKDFSGSRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 530
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TE+ +E G + +GK + L+ +E++ A E L
Sbjct: 531 TEDNFFEICDELGVKRPASVKVFSGKSERSSSGLLEWESKSDALETL 577
>gi|328712480|ref|XP_003244821.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 3
[Acyrthosiphon pisum]
Length = 632
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 140/215 (65%), Gaps = 19/215 (8%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +E++E +++ L PFG +T +++L+ KNQA L+M D SA + ++T
Sbjct: 79 KPSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADETSASAMVTYFT 138
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQ----------------GRGD---EPNRILLV 103
+RGR V++QFS+H+EL T + ++ G+ D PN +L V
Sbjct: 139 TCTAQLRGRAVFIQFSNHKELKTDQTHSNANASAQAALQAAQALAGQSDVQGGPNTVLRV 198
Query: 104 TIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
+ HM++PI+++VL+++FS +G V KIVTF K+ FQ LIQY +A A+ SL G+NI
Sbjct: 199 IVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDGQNI 258
Query: 164 YDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
Y CC+L I++S L L V YNN++SRD+TNP LP
Sbjct: 259 YTSCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 293
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 21/236 (8%)
Query: 214 GVAFP---QMANAAAIAAAFGGGLPPGITG----------TNDRCTVLVSNLNSDRIDED 260
G+A P AN+ + G LP G T C +LVSNLN + + D
Sbjct: 386 GLASPLATSYANSPVTSMPLGFTLPGGSLAAGTLRLPGQMTGQTCVLLVSNLNEEMVTPD 445
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
+F LF +YG+++R+K+L NK D ALVQM + QA LA+ L L+GK + V SK+
Sbjct: 446 AIFTLFGVYGDVLRVKILYNKKDGALVQMAEPHQAHLAMLHLDKVRLYGKYIRVMQSKYQ 505
Query: 321 NI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ T +Y +S L+RF + +KNY+ P+ +HLS +P ++E+ + +
Sbjct: 506 TVQLPKEGQPDSGLTKDYTSSPLHRFKKPGSKNYQNIYPPSSTLHLSNIPTTLSEDFLKT 565
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
E + V F +K AL+ E+ E+A AL+ H L + +R+SFS+
Sbjct: 566 AFENNTFTVKDFKFFPKDRKMALIQMESLEEAVAALIKMHNYRLSEQNHLRVSFSK 621
>gi|170028938|ref|XP_001842351.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
gi|167879401|gb|EDS42784.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
Length = 535
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 158/298 (53%), Gaps = 66/298 (22%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+V+H+RN+ +E SE D++ L PFG +T +++L+ KNQA L+M D +A + + +T
Sbjct: 20 KPSRVVHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKGKNQAFLEMADESAATSMVTMFT 79
Query: 63 NVQPTIRGRNVYVQFSSHQELTT--------MEQNAQGR--------------------- 93
P +RGR VYVQFS+H+EL T + Q+ G
Sbjct: 80 ATPPIVRGRTVYVQFSNHRELKTDQNHTATDLTQSPTGSPLPLALDHANTNSTTAGTGAN 139
Query: 94 ----GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRP 149
PN +L V + +LYP+++++L+Q+F G V KIVTF K+ FQALIQY
Sbjct: 140 VGGNAGGPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYPDAT 199
Query: 150 SAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------ 203
+A A+ +L G+NIY+GCC L I S L L V YNN++SRD+TNP LP+ + G
Sbjct: 200 TAQHAKQTLDGQNIYNGCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLPSGEPGSDVIAS 259
Query: 204 -----------------RPSQS------GYSEAGVAFP---QMANAAAIAAAFGGGLP 235
RP + G + GV P + N A+A+A+GG LP
Sbjct: 260 AGGLVSAGDLLLLAAGQRPQLTRDRLVNGLATPGVIPPFGLGLGN-PALASAYGGALP 316
>gi|395522271|ref|XP_003765161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Sarcophilus
harrisii]
Length = 510
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 225/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 19 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDILGACNAVNYA 78
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ R N +LL TI + +Y IT +VL+ +
Sbjct: 79 ADNQIYIAGHPAFVNYSTSQKISRPGDTDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 136
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 137 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 195
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 196 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 255
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 256 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 315
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 316 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 375
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 376 KQQAIMPGQSYGLEDGSCSYKDFSGSRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 433
Query: 367 TEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEAL 409
TE+ +E G + K+F ++ + L+ +E++ A E L
Sbjct: 434 TEDNFFEICDELGVKRPASGKVFSGKSERSSSGLLEWESKSDALETL 480
>gi|170042024|ref|XP_001848742.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
gi|167865565|gb|EDS28948.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
Length = 572
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 159/299 (53%), Gaps = 66/299 (22%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
++PS+V+H+RN+ +E SE D++ L PFG +T +++L+ KNQA L+M D +A + + +
Sbjct: 20 SKPSRVVHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKGKNQAFLEMADESAATSMVTMF 79
Query: 62 TNVQPTIRGRNVYVQFSSHQELTT--------MEQNAQGR-------------------- 93
T P +RGR VYVQFS+H+EL T + Q+ G
Sbjct: 80 TATPPIVRGRTVYVQFSNHRELKTDQNHTATDLTQSPTGSPLPLALDHANTNSTTAGTGA 139
Query: 94 -----GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
PN +L V + +LYP+++++L+Q+F G V KIVTF K+ FQALIQY
Sbjct: 140 NVGGNAGGPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYPDA 199
Query: 149 PSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG----- 203
+A A+ +L G+NIY+GCC L I S L L V YNN++SRD+TNP LP+ + G
Sbjct: 200 TTAQHAKQTLDGQNIYNGCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLPSGEPGSDVIA 259
Query: 204 ------------------RPSQS------GYSEAGVAFP---QMANAAAIAAAFGGGLP 235
RP + G + GV P + N A+A+A+GG LP
Sbjct: 260 SAGGLVSAGDLLLLAAGQRPQLTRDRLVNGLATPGVIPPFGLGLGN-PALASAYGGALP 317
>gi|417401975|gb|JAA47851.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 502
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 214/433 (49%), Gaps = 46/433 (10%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E L + I+ ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEAHLXXTLEKSPTISYVMMMPFKRQALVEFENMDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGR--------PSQSGYSEAGVAFPQMAN---AAAIAAAF 230
V N+ S D+T P L GR P S Y P++ A ++
Sbjct: 249 VIRNDNDSWDYTKPYL-----GRRGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYM 303
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
GG P G V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MG
Sbjct: 304 HGGNPSG-------SVVMVSGLHPLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMG 356
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNR 341
D + E AV L LFGKRL V SK ++ G ++ ++ S NRF
Sbjct: 357 DEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTS 416
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----L 396
+ P+ ++H +P VTEE +H + K + K A L
Sbjct: 417 AGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGL 476
Query: 397 VLFETEEQATEAL 409
+ +E + A EAL
Sbjct: 477 LEWECKTDAVEAL 489
>gi|348524681|ref|XP_003449851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oreochromis niloticus]
Length = 529
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/470 (29%), Positives = 220/470 (46%), Gaps = 71/470 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+H+R + + E DL++ Q FG I+ +VM+ K QAL++ +D+ + NA+ +
Sbjct: 39 PSPVVHIRGLVDGVMEADLVEALQEFGTISFVVMMPKKRQALVEYEDMNGSCNAVTYAAE 98
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q I G ++ +S+ Q+++ + R N +LL+TI + +YPIT +VL+ + +
Sbjct: 99 NQVYIAGHPAFINYSTSQKISRPGDSDDTR--SVNNVLLLTIINPIYPITTDVLYTICNN 156
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V
Sbjct: 157 CGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPARLNVF 215
Query: 184 YNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPP------- 236
N++ + D+TNPNL + S+ A P N A G PP
Sbjct: 216 KNDQDTWDYTNPNLSGQDADGEGNWNNSQDPNANP---NKRQRQPALLGDHPPDYGGPQG 272
Query: 237 GITGTNDRC-----------------------------------------TVLVSNLNSD 255
G G ND ++V L
Sbjct: 273 GYHGYNDDSYGPPPPHRMGPGMGGRGRGNQRYGPGYGPPPPEYGPHADSPVLMVYGLEPS 332
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
+I+ DK+FN+F LYGN+ R+K +++KP A+V+MGD + + A+ L LFG++L V
Sbjct: 333 KINADKVFNIFCLYGNVERVKFMKSKPGAAMVEMGDCYSVDRAITHLNNNFLFGQKLNVC 392
Query: 316 FSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQ 364
SK I G + ++ S NRF AAKN P+ ++H
Sbjct: 393 VSKQQAIVPGQCYQLEDNTSSFKDFHGSRNNRFTSPEQAAKN--RIQHPSNVLHFFNAQP 450
Query: 365 DVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQALVLFETEE--QATEALV 410
D++ E +E G + KLF ++ + L E E A EAL
Sbjct: 451 DISAEIFNQVCDELGIKRPTSVKLFTGKSERSSSGLLEWESINDAMEALA 500
>gi|294946321|ref|XP_002785022.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239898406|gb|EER16818.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 566
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 212/444 (47%), Gaps = 54/444 (12%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKV++VRN+ +SE +L+ Q FG +T +++LR K ++ ++ A +Y+
Sbjct: 36 SKVLYVRNIPMSLSEQNLIAYCQSFGQVTNILILRDKRHGFIEFENETEARRCHAYYSAN 95
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRG----DEPNRILLVTIHHMLYPITVEVLHQV 120
TI G+ + S E+T GR PNRILL TI +++YP+ V ++ QV
Sbjct: 96 PLTIDGQRLDFAISRFSEIT-------GRRYPDLHPPNRILLFTITNVVYPVNVSMIAQV 148
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
S + +EK+V F + LIQ +AV A++ L G+NI+ C + +QFS L +L
Sbjct: 149 MSRYNALEKVVIFTRGNATHCLIQTSSLEAAVAAKTQLDGQNIFTHCNTIRVQFSELSKL 208
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
+V YNNERS D+TNP+LP+ G + +G+ PQ + +AA
Sbjct: 209 EVKYNNERSWDYTNPSLPSGPPG-----AMAGSGLLGPQQRGMSGVAAT----------- 252
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
V V LN D L LF++YGN++++K++ + ALVQM + A+
Sbjct: 253 ----PVVFVLGLNEKDTTPDDLAALFAVYGNVVKVKIMYKARNSALVQMQTVGECHTAIA 308
Query: 301 FLKGALLFGKRLEVNFSK-----HPNITQGADTHEYMNSNLNRFNRN-AAKNYRYC---- 350
LKG L G +L + SK P GA+ E +R +R+ +++Y Y
Sbjct: 309 HLKGIRLHGNKLTMEMSKGGRELPPIPPPGAEQTE-----ADRLSRDYTSQSYLYARHRA 363
Query: 351 ------CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
P+ ++ S +P TEE++ L+ G F A+V + +
Sbjct: 364 DQTSRPFPPSSSLYFSNMPHGTTEEDLRELLDASGCQYTGIRFLNEQHHMAIVQCISLDN 423
Query: 405 ATEALVCKHASSLG--GSIIRISF 426
A E+L HA +G +R+ F
Sbjct: 424 AIESLCRAHAKPVGHPPRPVRVGF 447
>gi|431909696|gb|ELK12854.1| Heterogeneous nuclear ribonucleoprotein L [Pteropus alecto]
Length = 629
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/510 (26%), Positives = 231/510 (45%), Gaps = 107/510 (20%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQL---------------------------------- 147
+P G V++IV F+K+ G QA+++Y L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEYPLLGNGFLAAGALKAGRGATLSTSVYTGCLPCAKCL 271
Query: 148 ---------RPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL- 197
+PSA A++SL G +IY GCC L I+++ L V N++ + D+TNPNL
Sbjct: 272 HSVMGEVVSKPSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLS 331
Query: 198 --------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN------- 242
P +++ +P G A P + G PP G
Sbjct: 332 GQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGG 391
Query: 243 ----------------------------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR 274
D ++V L+ +++ D++FN+F LYGN+ +
Sbjct: 392 HRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK 451
Query: 275 IKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG--------- 325
+K +++KP A+V+M DG+ + A+ L +FG++L+V SK P I G
Sbjct: 452 VKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLKVCVSKQPAIMPGQSYGLEDGS 511
Query: 326 ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN 383
+ ++ S NRF+ AAKN P+ ++H P +VTEE +E G
Sbjct: 512 SSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRP 569
Query: 384 TKLFEMNGKKQ----ALVLFETEEQATEAL 409
+ + +GK + L+ +E++ A E L
Sbjct: 570 SSVKVFSGKSERSSSGLLEWESKSDALETL 599
>gi|348522987|ref|XP_003449005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oreochromis niloticus]
Length = 527
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 137/470 (29%), Positives = 225/470 (47%), Gaps = 66/470 (14%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + ++E DL++ Q FG I+ +V++ K QAL++ +D+ + A+ +
Sbjct: 34 TLPSVVVHVRGLVDGVTEADLVEALQEFGAISYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ Q+++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSQKISRPGDSDDSR--TVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 210
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFP-----QMANAAAIAAAFGGGL-- 234
V N++ + D+TNPNL ++ A P Q A +GGG
Sbjct: 211 VFKNDQDTWDYTNPNLGGPDGDADGNGSNADDVNANPNKRQRQPALLGDHPPEYGGGYHG 270
Query: 235 -------PP-----------GITGTN-------------------DRCTVLVSNLNSDRI 257
PP G G + D V+V L+ ++
Sbjct: 271 YDESYGSPPYEGRRMGPPMRGRGGRSYGPGYGPPPPPPGEYGAHADSPVVMVYGLDPVKM 330
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ R+K +++KP A+V+MGD + + A+ L LFG++L V S
Sbjct: 331 NADRVFNIFCLYGNVERVKFMKSKPGAAMVEMGDCYAVDRAITHLNNNFLFGQKLNVCVS 390
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K I G + E+ S NRF AAKN P+ ++H +
Sbjct: 391 KQQAIVPGQCYELEDGTSSFKEFHGSRNNRFTSPEQAAKN--RIQHPSNVLHFFNAQPEA 448
Query: 367 TEEEIVSHLEEHG--SIVNTKLF----EMNGKKQALVLFETEEQATEALV 410
T E +E G + VN K+F + L+ +E+ A EAL
Sbjct: 449 TPEIFSQICDEIGVKAPVNVKMFTGKTPSDRSASGLLEWESINDAMEALA 498
>gi|156378504|ref|XP_001631182.1| predicted protein [Nematostella vectensis]
gi|156218218|gb|EDO39119.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 221/453 (48%), Gaps = 51/453 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSA---INALQ 59
EPS+V+HVR V E E DL+Q +G I+ + M+ QAL++ +++ A +N Q
Sbjct: 45 EPSRVVHVRGVADEAREQDLMQCLSQYGNISCITMMPKIRQALVEFEEIACANTLVNQTQ 104
Query: 60 FYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD-EPNRILLVTIHHMLYPITVEVLH 118
V + GR Y +S ++++ +N R + +PN+ILL+TI + Y +T ++LH
Sbjct: 105 MGNPV--ILCGRPAYANYSKSKQIS---RNVHVRSETQPNKILLITIINPQYVVTTDILH 159
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQ---YQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
+FS G V++IV F+KS G QA+++ + +A A+ +L G +IY GC L I+
Sbjct: 160 TIFSKQGMVQRIVIFRKS-GLQAMVEESRFDCVEAARHAKETLNGADIYTGCNTLKIESQ 218
Query: 176 NL-DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGY-SEAGVAFPQMANAAAIAAAFGGG 233
+L V N+ + D+T P P + G S A+ A A +GG
Sbjct: 219 GYAQQLNVRKNDSETYDYTQDKGPGMLGHPPPKQGLLSPPPPAYGGGPPAYGGAPNYGGA 278
Query: 234 LPPGI-----------------TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIK 276
P G +G N ++V L+ D+++ D+LFNL YGN+I+IK
Sbjct: 279 PPMGYGAQPMQAPQMQTYRNHPSGGN---VIMVYGLDKDKMNCDRLFNLLCCYGNVIKIK 335
Query: 277 LLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH---------PNITQGAD 327
L KP A+ ++ + + L LF ++LE +FSK PN+ G+
Sbjct: 336 FLLGKPGTAMAELHEHVACNTVMENLSKMTLFDQQLEFSFSKQDYLVEPANVPNLPDGSP 395
Query: 328 THE-YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NT 384
+ + + NS NRF A + +P K++H P D TEE+I + G
Sbjct: 396 SFKSFDNSKNNRFTSATASSKNRVFTPMKVLHFFNAPVDCTEEQIREMCQVCGVAPPKTI 455
Query: 385 KLFEMNGKKQ---ALVLFETEEQATEALV-CKH 413
K+F +G + L+ +E+ QA EALV C H
Sbjct: 456 KMFSPSGNARTSSGLIEWESVTQALEALVMCNH 488
>gi|327287724|ref|XP_003228578.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Anolis
carolinensis]
Length = 553
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 130/468 (27%), Positives = 222/468 (47%), Gaps = 70/468 (14%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +D+ A +A+ + +
Sbjct: 65 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDMLGACSAVNYAADN 124
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPH 124
Q I G +V +S+ Q+++ + RG N +LL TI + +Y IT +VL+ + +P
Sbjct: 125 QIYIAGHPAFVNYSTSQKISRPGDSDDSRGV--NNVLLFTILNPIYSITTDVLYTICNPC 182
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V
Sbjct: 183 GPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFK 241
Query: 185 NNERSRDFTNPNLP--AEQKGRPSQ----------------------------SGYSEAG 214
N++ + D+TNPNL E G P++ GY
Sbjct: 242 NDQDTWDYTNPNLSGQGEPGGNPNKRQRQPPLLGDHPAEYGGPHGGYHGHYHDEGYGPPP 301
Query: 215 VAFPQMANAAAIAAAFGGGLPPGITGTN-----------------DRCTVLVSNLNSDRI 257
+ + G PG G D ++V L+ ++
Sbjct: 302 PHYEGRRMGPPVGGRHRG---PGRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 358
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +F ++L V S
Sbjct: 359 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFDQKLNVCVS 418
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 419 KQQAIMPGQSYGLEDGSCSYKDFSGSRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 476
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEALV 410
TE+ +E G + +GK + L+ +ET+ A E L
Sbjct: 477 TEDNFYEICDELGVKRPASVKVFSGKSERSSSGLLEWETKGDALETLA 524
>gi|348530603|ref|XP_003452800.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Oreochromis niloticus]
Length = 539
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 225/456 (49%), Gaps = 63/456 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + + E DL++ FG I ++M+ K QAL++ V SA + F T
Sbjct: 70 PSPVVHVRGLCDAVVEGDLVEALDKFGNICYVMMMPFKRQALVEFDSVESAERCVSFGTR 129
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQV 120
+ + + FS+ Q +T D+P N++LL++I + LYPIT +VL+ V
Sbjct: 130 DAVYVAEQQAFFNFSTSQRITRPTNT-----DDPSSGNKVLLLSIQNPLYPITTDVLYTV 184
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V +IV F+++ G QA+++++ A A+ +L G +IY GCC L I+++ + L
Sbjct: 185 CNPVGNVLRIVIFKRN-GIQAMVEFESVKDAQKAKLALNGADIYAGCCTLKIEYARPNRL 243
Query: 181 QVNYNNERSRDFTNPNLPAEQKGR-----------PSQSG-----------------YSE 212
V NN S D+T P L ++G+ PS G YSE
Sbjct: 244 NVICNNNTSWDYTKPFLLHRERGKGRQRHAILGEHPSNGGGPHWPLLPLPAKSRNWRYSE 303
Query: 213 A---GVAFP--QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFS 267
+ +P Q + + ++ G + +T +VS L+ +++ ++FNLF
Sbjct: 304 EVQERICYPLLQKTSPTSSSSFLGKSITSSVT--------MVSGLHPVKMNCSRIFNLFC 355
Query: 268 LYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ--- 324
LYGN+ ++K +++ P ALV+MGD + + AV L G +FGK+ V SK +
Sbjct: 356 LYGNVEKVKFMKSIPGTALVEMGDEYAVDRAVTHLNGIKVFGKKFNVCVSKQQAVIPSQV 415
Query: 325 ---GADTHEYMNSNLNRFNR-NAAKNYRYCC-SPTKMIHLSTLPQDVTEEEIVSHLEEHG 379
G T Y + +L R NR ++A++ R P ++H P ++ + ++ E+
Sbjct: 416 FELGDGTCSYQDFSLTRNNRFSSAQSTRNIIQPPATVLHFYNAPPNLNQHQLQKLCTEYN 475
Query: 380 SIVNTKLFEMNGKKQA-----LVLFETEEQATEALV 410
+K + K + L+ F+++ +A EAL+
Sbjct: 476 ISAFSKFKVFDAKPSSKTLSGLLEFDSKTEAVEALI 511
>gi|148699703|gb|EDL31650.1| mCG13402, isoform CRA_g [Mus musculus]
Length = 366
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 148/265 (55%), Gaps = 38/265 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP 236
A P + +A+ A G G PP
Sbjct: 293 AAAFGAPGIMSASPYA---GAGFPP 314
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|355714176|gb|AES04919.1| polypyrimidine tract binding protein 1 [Mustela putorius furo]
Length = 353
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 148/265 (55%), Gaps = 38/265 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP 236
A P + +A+ A G G PP
Sbjct: 294 AAAFGAPGIMSASPYA---GAGFPP 315
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>gi|380799767|gb|AFE71759.1| heterogeneous nuclear ribonucleoprotein L isoform a, partial
[Macaca mulatta]
Length = 467
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 212/442 (47%), Gaps = 64/442 (14%)
Query: 27 QPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86
Q FG I+ +V++ K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++
Sbjct: 1 QEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRP 60
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
+ R N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++
Sbjct: 61 GDSDDSR--SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFD 117
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL--------- 197
SA A++SL G +IY GCC L I+++ L V N++ + D+TNPNL
Sbjct: 118 SVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSN 177
Query: 198 PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN--------------- 242
P +++ +P G A P + G PP G
Sbjct: 178 PNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRY 237
Query: 243 --------------------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP
Sbjct: 238 GPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP 297
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMN 333
A+V+M DG+ + A+ L +FG++L V SK P I G ++
Sbjct: 298 GAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSE 357
Query: 334 SNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
S NRF+ AAKN P+ ++H P +VTEE +E G + + +G
Sbjct: 358 SRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSG 415
Query: 392 KKQ----ALVLFETEEQATEAL 409
K + L+ +E++ A E L
Sbjct: 416 KSERSSSGLLEWESKSDALETL 437
>gi|348538507|ref|XP_003456732.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Oreochromis
niloticus]
Length = 556
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 222/458 (48%), Gaps = 65/458 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + + E DL+ + FG I ++M+ K QAL++ V SA +
Sbjct: 85 PSPVVHVRGLCEAVVEADLIDALEKFGPICYVMMMPFKRQALVEFSAVESADRCVSCGAK 144
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPN---RILLVTIHHMLYPITVEVLHQV 120
I G+ Y +S+ + +T NA D PN ++LL++I + LYPIT +VL+ V
Sbjct: 145 EPVYIAGQQAYFNYSTSKRITR-PTNA----DNPNSGNKVLLLSIQNPLYPITTDVLYTV 199
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V +IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 200 CNPIGSVLRIVIFKRN-GIQAMVEFESVQCAQKAKAALNGADIYAGCCTLKIEYARPTRL 258
Query: 181 QVNYNNERSRDFTNPNLPAEQ-----KGR---------PSQSG----------------- 209
V N+ S D+T P L KGR PS G
Sbjct: 259 NVIKNDNESWDYTKPYLVRRDVHNRGKGRQRQAILGEHPSSYGDNGYGPPCPLLPLPGNS 318
Query: 210 -YSEAGVAFPQMAN--AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLF 266
Y + P M + ++++ G P + +VS L+ +++ ++FNLF
Sbjct: 319 RYKLTSLDVPDMVSYPLPQSSSSYSGHAPSSV--------AMVSGLHPSKMNCTRIFNLF 370
Query: 267 SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH----PN- 321
LYGNI ++K +++ P ALV+MGD + + A+ L +FGKRL V SK P+
Sbjct: 371 CLYGNIEKVKFMKSVPGTALVEMGDEYAVDRAITHLNSIKVFGKRLNVCVSKQHAVIPSQ 430
Query: 322 ---ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 377
+ G+ ++ ++ + NRF+ + P+ ++H +P ++++ ++ E
Sbjct: 431 VFELEDGSSSYKDFAMTRNNRFSSAGQASKNIIQPPSAVLHYYNVPPCISQDHLLRLCTE 490
Query: 378 HG--SIVNTKLFEMNGKKQ---ALVLFETEEQATEALV 410
H V K+F+ + L+ F+++ +A E L
Sbjct: 491 HDLPGFVKFKMFDAKPSSKTISGLLEFDSKTEAVEVLT 528
>gi|403308155|ref|XP_003944537.1| PREDICTED: uncharacterized protein LOC101029560 [Saimiri
boliviensis boliviensis]
Length = 1167
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 148/265 (55%), Gaps = 38/265 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 292 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 351
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 352 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMV 411
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 412 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 469
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 470 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 528
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPP 236
A P + +A+ A G G PP
Sbjct: 529 AAAFGAPGIISASPYA---GAGFPP 550
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 111/193 (57%), Gaps = 11/193 (5%)
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
RC L L+ R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L
Sbjct: 975 RCLAL---LSLKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN 1031
Query: 304 GALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
G L GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+
Sbjct: 1032 GHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSAT 1091
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
+HLS +P V+EE++ +G +V F +K AL+ + E+A +AL+ H
Sbjct: 1092 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHD 1151
Query: 417 LGGS-IIRISFSQ 428
LG S +R+SFS+
Sbjct: 1152 LGESHHLRVSFSK 1164
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 332 MNSN-LNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
M+SN + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 266 MSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--L 323
Query: 387 FEMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 324 LMLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 375
>gi|62087400|dbj|BAD92147.1| polypyrimidine tract-binding protein 1 isoform c variant [Homo
sapiens]
Length = 329
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 146/264 (55%), Gaps = 50/264 (18%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 74 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 133
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 134 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 193
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 194 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 251
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP SG S
Sbjct: 252 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP---------SGDS 302
Query: 212 EAGVAFPQMANAAAIAAAFGGGLP 235
+ + +AAAFG LP
Sbjct: 303 QPSL-------DQTMAAAFGKRLP 319
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 57 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 114
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 115 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 157
>gi|26353062|dbj|BAC40161.1| unnamed protein product [Mus musculus]
Length = 299
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 134/228 (58%), Gaps = 34/228 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS 281
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>gi|399216457|emb|CCF73145.1| unnamed protein product [Babesia microti strain RI]
Length = 526
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 141/479 (29%), Positives = 233/479 (48%), Gaps = 54/479 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAINALQF 60
E + + +RN+ ++E D+ + QPF + K++M + A ++ A AL F
Sbjct: 44 EEHRTLLLRNLTPAVTEADVRSVMQPFSEDLTLKILMFPHQGNAFVEFPTSGDAQAALNF 103
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTME-------QNAQGRGDE------PNRILLVTIHH 107
++G + V S L+ +N GR +E P +ILLV+I +
Sbjct: 104 MQQHPVLVKGIPINVILSKRPTLSNKNHSHKIHNENGLGRNNELNKATGPTKILLVSITN 163
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKS-AGFQALIQYQLRPSAVVARSSLQGRNIYDG 166
++YP+ +E++H +FS G V KIV F K+ A FQA +Q++ + A ++L RNIY
Sbjct: 164 LVYPVDIELIHFLFSKFGTVNKIVCFSKNPATFQAFVQFEHHSQSKEALAALNNRNIYSD 223
Query: 167 CCQLDIQFSNLDELQVNYNNERSRDFTNPNL----PAEQKGRPSQSGYSE------AGVA 216
C + + +SN+++L V N+ RS D+T+ L P +GR Q G ++ G
Sbjct: 224 CNTIHVSYSNMEDLIVKSNSARSWDYTSAPLLDRPPDYLRGR-GQRGKADIDKGIIPGFQ 282
Query: 217 FPQMANAAAIAAAF-----GGGLP-----PGITGTNDRCTVLVSNLN-SDRIDEDKLFNL 265
+ +N + F LP I N R T ++ N ID +K+FNL
Sbjct: 283 DQRFSNGLQFHSQFFPQPLSQHLPRELRESMIDVNNPRQTPVIICYNLPGYIDSNKIFNL 342
Query: 266 FSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI--- 322
FS+YG + RIK+LR+KPD AL+Q A LA FL+ +FGK L+++FSK+ +
Sbjct: 343 FSIYGCVSRIKILRDKPDAALIQYTSPIYASLANVFLQRQQVFGKELQISFSKNMEVKMP 402
Query: 323 ---------TQGADTHEYMNSNLNRFNRNAAKNY-RYCCSPTKMIHLSTLPQDVTEEEIV 372
+G+ N R+ + + Y + C PTK ++ L VTEEE+
Sbjct: 403 LPVQMQSEDVEGSKKTVQFNMRDQRYGTDEMQRYIKGACKPTKTAFIANLSLGVTEEELR 462
Query: 373 SHLEEHGSIVNTKL--FEMNGKKQ-ALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
+ G++V ++ + + K Q ALV ET +Q ++ H + + I+I+FS+
Sbjct: 463 DIISASGNVVKVRIKSHKESAKTQLALVEMETIDQTILCVMNLHNTLVRDRSIKIAFSK 521
>gi|47224789|emb|CAG06359.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 204/420 (48%), Gaps = 65/420 (15%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + ++E DL + FG I+ +V++ K QAL++ D+ + A+ +
Sbjct: 34 TLPSVVVHVRGLVDGVTEGDLCDALKEFGEISYVVLMPKKRQALVEYADMNGSFTAVTYA 93
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ +S+ Q+++ + R N +LL TI + +YPIT +VL+ +
Sbjct: 94 ADNQVYIAGHPAFINYSTSQKISRPGDSDDSR--SVNNVLLFTIMNPIYPITTDVLYTIC 151
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPS---AVVARSSLQGRNIYDGCCQLDIQFSNLD 178
+ G V++IV F+K+ G QA+++Y S A A++SL G +IY GCC L I+++
Sbjct: 152 NNCGPVQRIVIFRKN-GVQAMVEYPFIDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPT 210
Query: 179 ELQVNYNNERSRDFTNPNL--PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGG--- 233
L V N++ + D+TNPNL P + P++ Q A +GGG
Sbjct: 211 RLNVFKNDQETWDYTNPNLGGPEDVNANPNKRQR--------QPALLGDHPPEYGGGYHG 262
Query: 234 -----------LPPGITGTNDRC----------------------TVLVSNLNSDRIDED 260
+ P + G R V++ L+ +++ D
Sbjct: 263 YDESYGYEGRRMGPPMRGRGGRSYGPGYGPPPPPPGEYGSHAESPVVMLYGLDPQKMNAD 322
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
++FN+F LYGN+ R+K +++KP A+V+MGD + + A+ L LFG+++ V SK
Sbjct: 323 RIFNIFCLYGNVERVKFMKSKPGAAMVEMGDCYAVDRAITHLNNTYLFGQKINVCVSKQQ 382
Query: 321 NITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
I G + ++ S NRF AAKN P+ ++H DVT E
Sbjct: 383 AIVPGQCYELEDGSSSFKDFHGSRNNRFASPEQAAKNRIQ--HPSNVLHFFNAQPDVTPE 440
>gi|432843758|ref|XP_004065651.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Oryzias
latipes]
Length = 582
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 221/449 (49%), Gaps = 49/449 (10%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + + E DL++ + FG I ++M+ K QAL++ V SA +
Sbjct: 111 PSPVVHVRGLCDAVVEADLVEALEKFGTICYVMMMPFKRQALVEFDSVESAERCVTCGGR 170
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQV 120
I + + FS+ Q +T NA D+P N++LL++I + LYPIT +VL+ V
Sbjct: 171 EPVYIADQQAFFNFSTSQRITR-PTNA----DDPTSKNKVLLLSIQNPLYPITTDVLYTV 225
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V +IV F+++ G QA+++++ A A+ +L G +IY GCC L I+++ + L
Sbjct: 226 CNPVGNVLRIVIFKRN-GIQAMVEFESVEDAQKAKLALNGADIYSGCCTLKIEYARPNRL 284
Query: 181 QVNYNNERSRDFTNP-----NLPAEQKGRPSQS--------GYSEAGVAFPQMANA---- 223
V N+ S D+T P ++ KGR Q+ GY N+
Sbjct: 285 NVVRNDNTSWDYTKPFLLHRDVVKRGKGRQRQAILGEHPSNGYGPHCPLLTLPTNSRYRR 344
Query: 224 AAIAAAFGGGLPPGITGT----------NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
++ PP + T +VS L+ +++ ++FNLF LYGN+
Sbjct: 345 SSEQVQDMISYPPLLPKTFPSTSSSSLLGSSSVAMVSGLHPSKMNCSRIFNLFCLYGNVE 404
Query: 274 RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG-----AD- 327
++K +++ P ALV+MGD + + AV L G +FGK+L V SK + AD
Sbjct: 405 KVKFMKSVPGTALVEMGDEYAVDRAVTHLNGIKVFGKKLNVCVSKQQAVIPSQVFELADC 464
Query: 328 THEYMNSNLNRFNR--NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVN 383
+ Y + +L R NR +A + P ++H P +T+ +++ EH S +
Sbjct: 465 SSSYQDFSLTRNNRFSSAHSSRNIIQPPAAVLHFYNGPPTLTQHQLLKLCSEHSVPSFIK 524
Query: 384 TKLFEMNGKKQ---ALVLFETEEQATEAL 409
K+F+ + L+ F+++ +A EAL
Sbjct: 525 FKVFDAKPSSKTLSGLLEFDSKTEAIEAL 553
>gi|213510846|ref|NP_001133491.1| Heterogeneous nuclear ribonucleoprotein L-like [Salmo salar]
gi|209154218|gb|ACI33341.1| Heterogeneous nuclear ribonucleoprotein L-like [Salmo salar]
Length = 548
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 222/446 (49%), Gaps = 47/446 (10%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ + V SA + ++
Sbjct: 80 SPVVHVRGLCEAVVEADLVEALEKFGPICYVMMMPFKRQALVEFEMVESADKCVACGSSE 139
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPN---RILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T + D PN ++LL++I + LYPIT +VL+ V
Sbjct: 140 AVYIAGQQAFFNYSTSKRITRPTNS-----DNPNSGNKVLLLSIQNPLYPITTDVLYTVC 194
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V +IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 195 NPIGSVMRIVIFKRN-GIQAMVEFESIECAQKAKAALNGADIYAGCCTLKIEYARPTRLN 253
Query: 182 VNYNNERSRDFTNP-----NLPAEQKGRPSQS------------GYSEAGVAFPQMANAA 224
V N+ S D+T P ++ KGR Q+ GY P N+
Sbjct: 254 VIRNDNESWDYTKPYLVRRDVSERGKGRQRQAILGEHPSSYGDNGYGSHCPLLPLPGNSR 313
Query: 225 ------AIAAAFGGGLPPGITGTNDRCTV-LVSNLNSDRIDEDKLFNLFSLYGNIIRIKL 277
I LP + + +V +VS L+ +++ ++FNLF LYGNI ++K
Sbjct: 314 YKLSSHDIPEVVAYPLPQSSSYNHGSSSVAMVSGLHPAKMNCTRIFNLFCLYGNIEKVKF 373
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH----PN----ITQGADTH 329
+++ P ALV+MGD + + A+ L +FGKRL V SK P+ + G+ ++
Sbjct: 374 MKSVPGTALVEMGDEYAVDRAITHLNSIKVFGKRLNVCVSKQHAVIPSQVFELEDGSSSY 433
Query: 330 -EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
++ + NRF + P+ ++H +P ++E++++ EH TK
Sbjct: 434 KDFAMTRNNRFTSQGQASKNIIQPPSCVLHYYNVPPCISEDQLLRLCSEHDVPGFTKFKM 493
Query: 389 MNGKKQA-----LVLFETEEQATEAL 409
+ K + L+ F+++ A E L
Sbjct: 494 FDAKPSSKTISGLLEFDSKTHAVEVL 519
>gi|226481403|emb|CAX73599.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 535
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 219/471 (46%), Gaps = 63/471 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS VIH+R + E DL+++F+ FG I + M+ K QAL++ D+ SA A+ +
Sbjct: 16 EPSPVIHIRELPEHTLELDLIRVFEQFGSIRDIAMIPHKGQALIEFDDINSAERAVARCS 75
Query: 63 NVQPTIRGRNVYVQFSSHQELT--TMEQNAQGRGDEP-NRILLVTIHHMLYPITVEVLHQ 119
+ V +S+ + + +E + Q P +R+L++T+++ YPITV+V+HQ
Sbjct: 76 ENAVMFANHRLKVNYSTSKRVIHRPLENDNQHPELPPESRVLILTVYNAQYPITVDVIHQ 135
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDE 179
+ + HG V +IV +K+ QA+++++ A A+ L G +IY GCC L ++F+
Sbjct: 136 ITAKHGRVLRIVILRKTR-IQAMVEFKNTEEARTAKRHLNGADIYSGCCTLKVEFARPTR 194
Query: 180 LQVNYNNERSRDFTNPNL------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAA----- 228
L V N++ S DF NP L A+ +G S G E A + + + A
Sbjct: 195 LTVTRNDQDSWDFENPLLLSSPLNEADGRGDISLLGRFERSRARHESSRSVNGGAFGYHD 254
Query: 229 ------AFGGGLPP----------------GITGTNDRC-------TVLVSNLNSDRIDE 259
A G +PP G+ G N + ++V N++ D ++
Sbjct: 255 GFMKQNAVGISVPPASFLDQLALNYHVSRRGLDGLNGQPYTRAATPVIMVYNMDMDHMNC 314
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D+LFNL LYGN++RIK LR K A+ QMGD + + L L G L + SK
Sbjct: 315 DRLFNLLCLYGNVVRIKFLRTKEGSAMAQMGDNLSVDRVITNLSEVPLMGNALSIRPSKQ 374
Query: 320 PNITQGADTHE----------YMNSNLNRF--NRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
I +E Y NR+ A+KN Y P+ +H P + T
Sbjct: 375 QLILDVPKPYELPDGTPSFKDYSGCRENRYINPDKASKNRIY--PPSNTLHYWNCPPNYT 432
Query: 368 EEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEAL-VCKH 413
EE+ + E G+ ++ + LV + T+++A AL +C H
Sbjct: 433 TEELRKLIVECGASPPRQIAPFPRISDRSSSGLVEWGTKDEAVTALALCNH 483
>gi|16580751|dbj|BAB71743.1| PTB-like protein S [Homo sapiens]
gi|119593415|gb|EAW73009.1| polypyrimidine tract binding protein 2, isoform CRA_e [Homo
sapiens]
Length = 356
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 140/230 (60%), Gaps = 28/230 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS 206
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPA 285
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|338725424|ref|XP_001490156.3| PREDICTED: polypyrimidine tract-binding protein 2 [Equus caballus]
gi|402855346|ref|XP_003892287.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Papio
anubis]
gi|194379976|dbj|BAG58340.1| unnamed protein product [Homo sapiens]
Length = 325
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 140/230 (60%), Gaps = 28/230 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 85
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 86 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 145
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 205
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS 206
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+
Sbjct: 206 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPA 254
>gi|47208707|emb|CAF90432.1| unnamed protein product [Tetraodon nigroviridis]
Length = 499
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 128/474 (27%), Positives = 225/474 (47%), Gaps = 82/474 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + + E DL+ + FG I ++M+ K QAL++ ++ SA +
Sbjct: 11 PSPVVHVRGLCEAVVEADLIDALEKFGTICYVMMMPFKRQALVEFSELQSADRCVSCGAK 70
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPN---RILLVTIHHMLYPITV------ 114
I G+ Y +S+ + +T NA D PN ++LL++I + LYPIT
Sbjct: 71 EPVYIAGQQAYFNYSTSKRITR-PTNA----DNPNSGNKVLLLSIQNPLYPITTVTTAAR 125
Query: 115 -------------EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
+VL+ V +P G V +IV F+++ G QA+++++ A A+++L G
Sbjct: 126 PGACWRSDCGLTQDVLYTVCNPVGNVLRIVIFKRN-GIQAMVEFESVHCAQKAKAALNGA 184
Query: 162 NIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ---------SGYSE 212
+IY GCC L I+++ L V N+ S D+T P L +G+ Q + YSE
Sbjct: 185 DIYAGCCTLKIEYARPTRLNVIKNDNESWDYTKPYLVRRDRGKGRQRQAILGEHPASYSE 244
Query: 213 AGVA--------------------FPQMAN---AAAIAAAFGGGLPPGITGTNDRCTVLV 249
G P M + + + ++ G P + +V
Sbjct: 245 NGYGPPCPLLPLPSNSRYKLSPLDVPDMVSYPLPQSSSYSYSGHTPSSVA--------MV 296
Query: 250 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 309
S L+ +++ ++FNLF LYGNI ++K +++ P ALV+MGD + + A+ L +FG
Sbjct: 297 SGLHPSKMNCTRIFNLFCLYGNIEKVKFMKSVPGTALVEMGDEYAVDRAITHLNSIKVFG 356
Query: 310 KRLEVNFSKH----PN----ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
KRL V SK P+ + G+ ++ ++ + NRF+ + P+ ++H
Sbjct: 357 KRLNVCVSKQHAVIPSQVFELEDGSSSYKDFAMTRNNRFSSAGQASKNIIQPPSAVLHYY 416
Query: 361 TLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+P V++E+++ EH V K+F+ + L+ F+++ +A E L
Sbjct: 417 NVPPCVSQEQLLRLCSEHDVPGFVKFKMFDAKPSSKTISGLLEFDSKTEAVEVL 470
>gi|330840158|ref|XP_003292087.1| hypothetical protein DICPUDRAFT_82723 [Dictyostelium purpureum]
gi|325077693|gb|EGC31389.1| hypothetical protein DICPUDRAFT_82723 [Dictyostelium purpureum]
Length = 748
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 133/190 (70%), Gaps = 8/190 (4%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKV+H+RN+ + +E +++ L +PFG I +++++ K+QAL+QM ++ SAI+ +Q+YT
Sbjct: 173 PSKVVHLRNLPPDCTEQEIISLIEPFGAIENMIIIKGKSQALVQMVEISSAISFIQYYTT 232
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
VQ +IR + +Y QFS+ +E++ ++ PN ILL+TI++ LY +T+E L++VFS
Sbjct: 233 VQGSIRSKTIYTQFSNRKEISPAKET-------PNCILLITINNYLYNVTIEELYKVFSN 285
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V K++ F KS +Q+LI+ + AV A+++L G NI + C L IQFS+L L++
Sbjct: 286 FGTVNKVLLFTKSGNYQSLIEMKTPEEAVKAKNNLDGMNI-NNTCSLKIQFSSLTSLKIK 344
Query: 184 YNNERSRDFT 193
YNNE+SRDFT
Sbjct: 345 YNNEKSRDFT 354
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V+ L D + D LF LF +YG+ IR+K+L N+ D AL+QM QAEL + +L
Sbjct: 546 LIVAGLPMDNVSPDDLFTLFGIYGDPIRVKILFNRKDTALIQMNTSQQAELVLQYLHSFP 605
Query: 307 LFGKRLEVNFSKH-------PNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
G + VN SKH P G T +Y S ++RF +KNY P+ +HL
Sbjct: 606 FKGHNIRVNISKHKVVQLPRPGEDNGELTKDYTGSPMHRFKLPGSKNYLNIHPPSNFLHL 665
Query: 360 STLPQDVTEEEIVSHLEE----HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS 415
S LP ++ + + + HG + + K F+ N K AL+ + EQA +LV H
Sbjct: 666 SNLPDSNNNLDLENRIRQLFSVHGEVKSFKFFQ-NDMKMALLEMASLEQAINSLVSLHGY 724
Query: 416 SL-GGSIIRISFSQ 428
+L G + I++SF++
Sbjct: 725 TLMGDTAIKVSFAK 738
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+ K +P+K++HL LP D TE+EI+S +E G+I N + + GK QALV +
Sbjct: 163 SKKQKNLVHTPSKVVHLRNLPPDCTEQEIISLIEPFGAIEN--MIIIKGKSQALV--QMV 218
Query: 403 EQATEALVCKHASSLGGSI 421
E ++ ++ +++ GSI
Sbjct: 219 EISSAISFIQYYTTVQGSI 237
>gi|392346115|ref|XP_003749467.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like, partial [Rattus norvegicus]
Length = 582
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/472 (27%), Positives = 233/472 (49%), Gaps = 76/472 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + DL++ Q FG I+ +V++ K Q L++ +DV A NA+++
Sbjct: 93 TPASPVVHIRGLIGRVVGADLVEALQEFGSISYVVVMPKKRQTLVEFEDVLGACNAVKYA 152
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ + + Q+++ + + N +LL TI + +Y IT +VL+ +
Sbjct: 153 ADNQIYIAGHPAFINYCTSQKISRPGDSEDSQSI--NSVLLFTILNPIYSITTDVLYTIC 210
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G +++ V F+++ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 211 NPCGPIQRTVIFREN-GVQAMVEFDSVQSAQSAKASLDGADIYSGCCTLTIEYAKPTRLN 269
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL------- 234
V+ NN+ + D+TNP L + G P S ++E P + + A GG
Sbjct: 270 VSKNNQDTWDYTNPXLSGQ--GDPG-SNHNECQRQPPLLGDHPAEYGGPHGGYHSHYHDE 326
Query: 235 ----PPGITGTN-----------------------------------DRCTVLVSNLNSD 255
PP G D ++V L+
Sbjct: 327 GYXPPPHYEGRRMGPPVGGHRRGPSRYGPXYGHPSPPPPPPDYGPHADSPVLIVYGLDQS 386
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
+++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V
Sbjct: 387 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 446
Query: 316 FSKHPNITQGAD-----THEYMNSNLNRFNR-----NAAKNYRYCCSPTKMIHLSTLPQD 365
SK P I G + Y + + +R +R AAKN+ P+ ++H + +
Sbjct: 447 VSKQPAIMPGQSYGLERSCSYKHFSESRNSRLSTPEQAAKNHIQ--HPSNVLHFFSSTLE 504
Query: 366 VTEE---EIVSHLE-EHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
VT+ EI LE +H + V K+F +GK++ L+ ++++ A E L
Sbjct: 505 VTQXKFFEICDELEVKHPTSV--KVF--SGKREHSSSGLLEWDSKSDALETL 552
>gi|402890610|ref|XP_003908576.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Papio anubis]
Length = 413
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 200/399 (50%), Gaps = 40/399 (10%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+M+ K QAL++ +++ SA + F + I G+ + +S+ + +T G D
Sbjct: 1 MMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITR-----PGNTD 55
Query: 96 EP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA++ ++ A
Sbjct: 56 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQ 114
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR-----PSQ 207
A+++L G +IY GCC L I+++ L V N+ S D+T P L ++G P
Sbjct: 115 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL--GRRGSHGPLLPLP 172
Query: 208 SGYSEAGVAFPQMAN---AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
S Y P++ A ++ GG P G V+VS L+ +++ ++FN
Sbjct: 173 SRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFN 225
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT- 323
LF LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 226 LFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVP 285
Query: 324 -------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
G ++ ++ S NRF + P+ ++H +P VTEE
Sbjct: 286 SQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLC 345
Query: 376 EEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEAL 409
+H + K + K A L+ +E + A EAL
Sbjct: 346 NDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 384
>gi|392339204|ref|XP_003753752.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Rattus norvegicus]
Length = 609
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/472 (27%), Positives = 233/472 (49%), Gaps = 76/472 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + DL++ Q FG I+ +V++ K Q L++ +DV A NA+++
Sbjct: 120 TPASPVVHIRGLIGRVVGADLVEALQEFGSISYVVVMPKKRQTLVEFEDVLGACNAVKYA 179
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ + + Q+++ + + N +LL TI + +Y IT +VL+ +
Sbjct: 180 ADNQIYIAGHPAFINYCTSQKISRPGDSEDSQSI--NSVLLFTILNPIYSITTDVLYTIC 237
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G +++ V F+++ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 238 NPCGPIQRTVIFREN-GVQAMVEFDSVQSAQSAKASLDGADIYSGCCTLTIEYAKPTRLN 296
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL------- 234
V+ NN+ + D+TNP L + G P S ++E P + + A GG
Sbjct: 297 VSKNNQDTWDYTNPXLSGQ--GDPG-SNHNECQRQPPLLGDHPAEYGGPHGGYHSHYHDE 353
Query: 235 ----PPGITGTN-----------------------------------DRCTVLVSNLNSD 255
PP G D ++V L+
Sbjct: 354 GYXPPPHYEGRRMGPPVGGHRRGPSRYGPXYGHPSPPPPPPDYGPHADSPVLIVYGLDQS 413
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
+++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V
Sbjct: 414 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 473
Query: 316 FSKHPNITQGAD-----THEYMNSNLNRFNR-----NAAKNYRYCCSPTKMIHLSTLPQD 365
SK P I G + Y + + +R +R AAKN + P+ ++H + +
Sbjct: 474 VSKQPAIMPGQSYGLERSCSYKHFSESRNSRLSTPEQAAKN--HIQHPSNVLHFFSSTLE 531
Query: 366 VTEE---EIVSHLE-EHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
VT+ EI LE +H + V K+F +GK++ L+ ++++ A E L
Sbjct: 532 VTQXKFFEICDELEVKHPTSV--KVF--SGKREHSSSGLLEWDSKSDALETL 579
>gi|67972328|dbj|BAE02506.1| unnamed protein product [Macaca fascicularis]
Length = 437
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 203/421 (48%), Gaps = 60/421 (14%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+M+ K QAL++ +++ SA + F + I G+ + +S+ + +T G D
Sbjct: 1 MMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITR-----PGNTD 55
Query: 96 EP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ A
Sbjct: 56 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQ 114
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----- 207
A+++L G +IY GCC L I+++ L V N+ S D+T P L +G+ Q
Sbjct: 115 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAIL 174
Query: 208 ---------SGYSEAGVAFP-----QMAN-----------AAAIAAAFGGGLPPGITGTN 242
GY G P +M + A ++ GG P G
Sbjct: 175 GEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG----- 229
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD + E AV L
Sbjct: 230 --SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 287
Query: 303 KGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSP 353
LFGKRL V SK ++ G ++ ++ S NRF + P
Sbjct: 288 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 347
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEA 408
+ ++H +P VTEE +H + K + K A L+ +E + A EA
Sbjct: 348 SCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEA 407
Query: 409 L 409
L
Sbjct: 408 L 408
>gi|256080365|ref|XP_002576452.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|238661720|emb|CAZ32689.1| heterogeneous nuclear ribonucleoprotein l (hnrnp l), putative
[Schistosoma mansoni]
Length = 544
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/471 (28%), Positives = 222/471 (47%), Gaps = 63/471 (13%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS VIH+R + E DL+++F+ FG I + M+ K QAL++ D+ SA A+ +
Sbjct: 25 EPSPVIHIRELPEHTLELDLIRVFEQFGSIRDIAMIPHKGQALIEFDDINSAERAVARCS 84
Query: 63 NVQPTIRGRNVYVQFSSHQELT--TMEQNAQGRGDEP-NRILLVTIHHMLYPITVEVLHQ 119
+ V +S+ + + +E + Q P +R+L++T+++ YPITV+V+HQ
Sbjct: 85 ENAVMFANHRLKVNYSTSKRVVHRPLENDNQHSELPPESRVLMLTVYNAQYPITVDVIHQ 144
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDE 179
+ + HG V +IV +K+ QA+++++ A A+ L G +IY GCC L ++F+
Sbjct: 145 ITAKHGRVLRIVILRKTR-IQAMVEFKNTEEARTAKRHLNGADIYSGCCTLKVEFARPTR 203
Query: 180 LQVNYNNERSRDFTNPNL------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAA----- 228
L V N++ S DF NP L ++ +G S G E A + + + +
Sbjct: 204 LTVTRNDQDSWDFENPLLLSTSLNESDGRGDISLLGRFERSRARHESSRSVNGGSFGYHD 263
Query: 229 ------AFGGGLPP----------------GITGTNDR-------CTVLVSNLNSDRIDE 259
A G +PP G+ G N + ++V N++ D ++
Sbjct: 264 GFIKQNAVGLSVPPASFLDQLALNYHVSRRGLDGLNGQPYARASTAVIMVYNMDMDHMNC 323
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D+LFNL LYGN++RIK LR K A+ QMGD + + L L G L + SK
Sbjct: 324 DRLFNLLCLYGNVVRIKFLRTKEGSAMAQMGDNVSVDRVITNLSEVPLMGNALSIRPSKQ 383
Query: 320 ------PNITQGAD-THEYMNSNLNRFNR-----NAAKNYRYCCSPTKMIHLSTLPQDVT 367
P + D T + + + R NR A+KN Y P+ +H P + T
Sbjct: 384 QLILDVPKPFELPDGTPSFKDYSGCRENRYINPDKASKNRIY--PPSHTLHYWNCPPNYT 441
Query: 368 EEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEAL-VCKH 413
EE+ + E G+ ++ + LV + T+++A AL +C H
Sbjct: 442 PEELRKLIVECGASPPRQIAPFPRISDRSSSGLVEWGTKDEAVTALALCNH 492
>gi|402890606|ref|XP_003908574.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Papio anubis]
gi|119620774|gb|EAX00369.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_b [Homo
sapiens]
Length = 437
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 202/422 (47%), Gaps = 60/422 (14%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+M+ K QAL++ +++ SA + F + I G+ + +S+ + +T G D
Sbjct: 1 MMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITR-----PGNTD 55
Query: 96 EP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA++ ++ A
Sbjct: 56 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQ 114
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----- 207
A+++L G +IY GCC L I+++ L V N+ S D+T P L +G+ Q
Sbjct: 115 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAIL 174
Query: 208 ---------SGYSEAGVAFP-----QMAN-----------AAAIAAAFGGGLPPGITGTN 242
GY G P +M + A ++ GG P G
Sbjct: 175 GEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG----- 229
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD + E AV L
Sbjct: 230 --SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 287
Query: 303 KGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSP 353
LFGKRL V SK ++ G ++ ++ S NRF + P
Sbjct: 288 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 347
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEA 408
+ ++H +P VTEE +H + K + K A L+ +E + A EA
Sbjct: 348 SCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEA 407
Query: 409 LV 410
L
Sbjct: 408 LT 409
>gi|242079253|ref|XP_002444395.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
gi|241940745|gb|EES13890.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
Length = 462
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 185/337 (54%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C +
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHISACHM 189
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP Q + G+ P +
Sbjct: 190 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG--------- 232
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
P G + +L S N + D L +FS +G++ +I + +N AL+Q
Sbjct: 233 ----PDGKVKEPESNVLLASIENMQYAVTVDVLHTVFSAFGSVQKIAMFEKNGGMQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A +A L+G ++ +L +++S+H ++
Sbjct: 289 YPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 52/246 (21%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D P+A+ A ++ GR++
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKN-------SLDGRSIPKYLLPEHI 184
Query: 74 -----YVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRI 100
+ FS+H++L T +E Q G+ EP + +
Sbjct: 185 SACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 244
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L+G
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGSVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 161 RNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ 219
IYD G C+L + +S +L V ++ERSRD+T + A+ + S GVA+
Sbjct: 305 HCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTLSDPNAQLQAAAQAPVLSSPGVAWQN 364
Query: 220 MANAAA 225
A+A A
Sbjct: 365 TASAPA 370
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|358338430|dbj|GAA56814.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 873
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 206/437 (47%), Gaps = 74/437 (16%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS VIH+ + E LL+ F+ +G I + M+ + QAL++ D+ SA +A+ +
Sbjct: 346 EPSPVIHISELPEHTLEIFLLRTFEQYGPIKDVTMMPQRGQALIEFADISSAESAVVRCS 405
Query: 63 NVQPTIRGRNVYVQFSSHQELTTME---QNAQGRGDEP--NRILLVTIHHMLYPITVEVL 117
+ TI V V +S+ + + + ++ + D P +R+LL TI++ YPITV+V+
Sbjct: 406 EIPLTIANHRVRVNYSTSKRIVQRQLGGESGRDYSDGPLESRVLLFTIYNAQYPITVDVI 465
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
HQ+ S HG V +IV F+K+ QA+++++ A A+ +L G +IY GCC L I+F+
Sbjct: 466 HQITSRHGRVLRIVIFRKTH-VQAMVEFKNTDDARNAKRNLNGADIYSGCCTLKIEFARP 524
Query: 178 DELQVNYNNERSRDFTNPNLPAE--------------------------QKGRPSQSGYS 211
L V N++ + D+ N LP + + G SQ+G
Sbjct: 525 ARLTVLKNDQETWDYENSLLPTDPARIRISDGRANVSLLGRFGRSHDRHEAGSRSQNG-D 583
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGIT------------------------GTNDRCTV 247
AG +F + A + G PG T G + V
Sbjct: 584 GAGYSFHDSFARHSGALSLGA---PGSTLFDQLALSVHPSLAAAAAAETVLHGRSATPVV 640
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 307
+V N++ D+++ D+LFNL LYGN+IR+K LR+K A+ QMGD + + L L
Sbjct: 641 MVYNMDMDKMNCDRLFNLLCLYGNVIRVKFLRSKEGSAMAQMGDTLSVDRVIRNLSDVPL 700
Query: 308 FGKRLEVNFSKH------P---NITQGADT-HEYMNSNLNRF--NRNAAKNYRYCCSPTK 355
G +L++ SK P ++ G + +Y NR+ A+KN Y P+
Sbjct: 701 LGNQLQIRPSKQLVIVDVPKPFDLPDGTPSFKDYTGCRENRYINPEKASKNRIY--PPSN 758
Query: 356 MIHLSTLPQDVTEEEIV 372
+H P D + E+
Sbjct: 759 TLHYWNCPPDFSANELC 775
>gi|52632385|ref|NP_001005335.1| heterogeneous nuclear ribonucleoprotein L isoform b [Homo sapiens]
gi|332855272|ref|XP_001167265.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform 4 [Pan
troglodytes]
gi|397482177|ref|XP_003812309.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Pan paniscus]
gi|403305233|ref|XP_003943172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Saimiri
boliviensis boliviensis]
gi|158257662|dbj|BAF84804.1| unnamed protein product [Homo sapiens]
Length = 456
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 204/431 (47%), Gaps = 64/431 (14%)
Query: 38 LRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP 97
+ K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++ + R
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SV 58
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA A++S
Sbjct: 59 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 117
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL---------PAEQKGRPSQS 208
L G +IY GCC L I+++ L V N++ + D+TNPNL P +++ +P
Sbjct: 118 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 177
Query: 209 GYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN-------------------------- 242
G A P + G PP G
Sbjct: 178 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 237
Query: 243 ---------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 238 PPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGY 297
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 342
+ A+ L +FG++L V SK P I G ++ S NRF+
Sbjct: 298 AVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQ 357
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVL 398
AAKN P+ ++H P +VTEE +E G + + +GK + L+
Sbjct: 358 AAKN--RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLE 415
Query: 399 FETEEQATEAL 409
+E++ A E L
Sbjct: 416 WESKSDALETL 426
>gi|324504331|gb|ADY41870.1| Heterogeneous nuclear ribonucleoprotein L [Ascaris suum]
Length = 536
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/449 (25%), Positives = 206/449 (45%), Gaps = 50/449 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS V+HVRN+ +E DLL FG I + + K AL++ ++ SA + +
Sbjct: 69 EPSVVVHVRNLSSTTTEADLLDALCFFGEIAYVRCIPGKGMALVEFEEEDSARACITYTN 128
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
N Q I G+ +S+ +++ Q + +R+L++T++++ PI + V+ Q+ +
Sbjct: 129 NTQIYIMGQAALFNYSTSKKI----QRVGLETEHASRVLILTVYNVCQPIDINVIFQICA 184
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P+G V++I + G QAL+++ A A+ + G +IY GCC L ++F+ D + V
Sbjct: 185 PYGVVKRIAMLHR-FGVQALVEFDDMQMAKNAKRGINGADIYHGCCTLKVEFAKPDHVNV 243
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG---------- 232
N D+T +G + + +P + AA+ G
Sbjct: 244 TANTSMQWDYT--------------TGLTPGFIDYPHTIQQSLAAASKGTFSLPTQPGVA 289
Query: 233 --GLPPGITGTN-----DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA 285
G+ P + TN D C V++ + DK+FNL LYGN RIK +++KP+
Sbjct: 290 HYGMAPCLNNTNSGLARDGCVVVIHGAHQSSFSCDKIFNLLCLYGNCYRIKFMKSKPNVC 349
Query: 286 LVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ---------GADTH-EYMNSN 335
+VQMG +A V L G LFG L + + I + G+ ++ +Y +S
Sbjct: 350 MVQMGSASEACAVVENLNGVTLFGYTLSLRQCSYDVIHEIPEPLPLPDGSPSYRDYSSSR 409
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--TKLFEMNGKK 393
+RF A P ++ P ++EE + + V ++F + +
Sbjct: 410 NHRFTSAARAGRNKIVKPGPALYWFNAPSTISEETMKQLFVNKSAPVPHVVRIFPLKSDR 469
Query: 394 QA--LVLFETEEQATEALVCKHASSLGGS 420
+ + FET E++ EAL + +++G S
Sbjct: 470 SSNGICEFETTERSVEALALANHATVGPS 498
>gi|149056441|gb|EDM07872.1| rCG53531, isoform CRA_b [Rattus norvegicus]
Length = 456
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 204/431 (47%), Gaps = 64/431 (14%)
Query: 38 LRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP 97
+ K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++ + R
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SV 58
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA A++S
Sbjct: 59 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 117
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL---------PAEQKGRPSQS 208
L G +IY GCC L I+++ L V N++ + D+TNPNL P +++ +P
Sbjct: 118 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 177
Query: 209 GYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN-------------------------- 242
G A P + G PP G
Sbjct: 178 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 237
Query: 243 ---------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 238 PPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGY 297
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 342
+ A+ L +FG+++ V SK P I G ++ S NRF+
Sbjct: 298 AVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQ 357
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVL 398
AAKN P+ ++H P +VTEE +E G T + +GK + L+
Sbjct: 358 AAKN--RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLE 415
Query: 399 FETEEQATEAL 409
++++ A E L
Sbjct: 416 WDSKSDALETL 426
>gi|149025818|gb|EDL82061.1| polypyrimidine tract binding protein 2, isoform CRA_a [Rattus
norvegicus]
Length = 322
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 34/299 (11%)
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 28 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALD--PAIAAA 84
Query: 217 FPQMANAAAIAAAFGG------------------GLPPGITGTNDRCTVLVSNLNSDRID 258
F + + A+ A G+P G N +LVSNLN + +
Sbjct: 85 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVT 142
Query: 259 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SK
Sbjct: 143 PQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 202
Query: 319 HPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 371
H + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 203 HQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDL 262
Query: 372 VSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+ G V K F+ K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 263 RTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 319
>gi|67971924|dbj|BAE02304.1| unnamed protein product [Macaca fascicularis]
Length = 456
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 203/431 (47%), Gaps = 64/431 (14%)
Query: 38 LRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP 97
+ K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++ + R
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SV 58
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N +LL TI + +Y IT +VL+ + +P G V+ IV F+K+ G QA++++ SA A++S
Sbjct: 59 NSVLLFTILNPIYSITTDVLYTICNPCGPVQGIVIFRKN-GVQAMVEFDSVQSAQRAKAS 117
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL---------PAEQKGRPSQS 208
L G +IY GCC L I+++ L V N++ + D+TNPNL P +++ +P
Sbjct: 118 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 177
Query: 209 GYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN-------------------------- 242
G A P + G PP G
Sbjct: 178 GDRPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 237
Query: 243 ---------DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 238 PPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGY 297
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 342
+ A+ L +FG++L V SK P I G ++ S NRF+
Sbjct: 298 AVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQ 357
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVL 398
AAKN P+ ++H P +VTEE +E G + + +GK + L+
Sbjct: 358 AAKN--RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLE 415
Query: 399 FETEEQATEAL 409
+E++ A E L
Sbjct: 416 WESKSDALETL 426
>gi|413922343|gb|AFW62275.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 462
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 184/337 (54%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C +
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHISACHM 189
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP Q + G+ P +
Sbjct: 190 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG--------- 232
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
P G + +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 233 ----PDGKIKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A +A L+G ++ +L +++S+H ++
Sbjct: 289 YPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 126/264 (47%), Gaps = 58/264 (21%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D P+A+ A ++ GR++
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKN-------SLDGRSIPKYLLPEHI 184
Query: 74 -----YVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRI 100
+ FS+H++L T +E Q G+ EP + +
Sbjct: 185 SACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKIKEPESNV 244
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L+G
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 161 RNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ 219
IYD G C+L + +S +L V +++RSRD+T + A+ + S GVA+
Sbjct: 305 HCIYDGGYCKLHLSYSRHTDLNVKAHDDRSRDYTLSDPNAQLQAAAQAPVISSPGVAWQN 364
Query: 220 MANAAA------IAAAFGGGLPPG 237
A+A A AA+ G PP
Sbjct: 365 PASAPAAPFYGSTAASTPVGQPPA 388
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|414870439|tpg|DAA48996.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 314
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 174/320 (54%), Gaps = 41/320 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L+ L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + G C +
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHIGACHM 189
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP Q + G+ P +
Sbjct: 190 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG--------- 232
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
P G + +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 233 ----PDGKVKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLF 308
D A +A L+G ++
Sbjct: 289 YPDITTAAVAKQALEGHCIY 308
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 51/186 (27%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D P+A+ A + ++ GR++
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEA-------KNSLDGRSIPKYLLPEHI 184
Query: 74 -----YVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRI 100
+ FS+H++L T +E Q G+ EP + +
Sbjct: 185 GACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 244
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L+G
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 161 RNIYDG 166
IYDG
Sbjct: 305 HCIYDG 310
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|218201199|gb|EEC83626.1| hypothetical protein OsI_29352 [Oryza sativa Indica Group]
Length = 461
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 186/338 (55%), Gaps = 46/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P I+++V+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDISIDVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C L
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVPTCHL 189
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP + G+A P + I
Sbjct: 190 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNPT--------AIEGIAQPTLGPDGKI---- 237
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
VL++++ + + + D L +FS +G + +I + +N AL+
Sbjct: 238 ----------KEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALI 287
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
Q D A +A L+G ++ +L +++S+H ++
Sbjct: 288 QYPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 53/268 (19%)
Query: 16 EISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73
+IS + + +F FG + K+ A QAL+Q D P+A+ A ++ GR++
Sbjct: 123 DISIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKN-------SLDGRSI 175
Query: 74 --------------YVQFSSHQEL---------------------TTMEQNAQ------G 92
+ FS+H++L T +E AQ G
Sbjct: 176 PRYLLPEHVPTCHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDG 235
Query: 93 RGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A
Sbjct: 236 KIKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTA 295
Query: 152 VVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS-G 209
VA+ +L+G IYD G C+L + +S +L V ++ERSRD+T + P+ Q +Q+ G
Sbjct: 296 AVAKQALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVSSDPSAQMQAAAQAPG 355
Query: 210 YSEAGVAFPQMANAAAIAAAFGGGLPPG 237
S GVA+ A +A+ + P G
Sbjct: 356 PSTPGVAWQNTAPSASFYGSTAAATPVG 383
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|115476578|ref|NP_001061885.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|42407521|dbj|BAD10638.1| putative polypyrimidine tract-binding protein homolog [Oryza sativa
Japonica Group]
gi|113623854|dbj|BAF23799.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|215695278|dbj|BAG90469.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640621|gb|EEE68753.1| hypothetical protein OsJ_27445 [Oryza sativa Japonica Group]
Length = 461
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 186/338 (55%), Gaps = 46/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P I+++V+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDISIDVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C L
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVPTCHL 189
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP + G+A P + I
Sbjct: 190 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNPT--------AIEGIAQPTLGPDGKI---- 237
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
VL++++ + + + D L +FS +G + +I + +N AL+
Sbjct: 238 ----------KEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALI 287
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
Q D A +A L+G ++ +L +++S+H ++
Sbjct: 288 QYPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 53/268 (19%)
Query: 16 EISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73
+IS + + +F FG + K+ A QAL+Q D P+A+ A ++ GR++
Sbjct: 123 DISIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKN-------SLDGRSI 175
Query: 74 --------------YVQFSSHQEL---------------------TTMEQNAQ------G 92
+ FS+H++L T +E AQ G
Sbjct: 176 PRYLLPEHVPTCHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDG 235
Query: 93 RGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A
Sbjct: 236 KIKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTA 295
Query: 152 VVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS-G 209
VA+ +L+G IYD G C+L + +S +L V ++ERSRD+T + P+ Q +Q+ G
Sbjct: 296 AVAKQALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVSSDPSAQMQAAAQAPG 355
Query: 210 YSEAGVAFPQMANAAAIAAAFGGGLPPG 237
S GVA+ A +A+ + P G
Sbjct: 356 PSTPGVAWQNTAPSASFYGSTAAATPVG 383
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|260784453|ref|XP_002587281.1| hypothetical protein BRAFLDRAFT_237696 [Branchiostoma floridae]
gi|229272423|gb|EEN43292.1| hypothetical protein BRAFLDRAFT_237696 [Branchiostoma floridae]
Length = 304
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 151/299 (50%), Gaps = 26/299 (8%)
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV- 215
SL G+NIY+ CC L I +S L+ L V YNN++SRD+T P LPA G+PS G
Sbjct: 5 SLDGQNIYNACCTLRIDYSKLETLNVKYNNDKSRDYTRPELPAGD-GQPSLEQAMGLGTF 63
Query: 216 -AFPQMANAAAIAAAFGGGLPPGITGTNDR---------------CTVLVSNLNSDRIDE 259
P + + ++ G +P T N +LVSNLN++ +
Sbjct: 64 DPGPPLLSLPSVPGGLTGSIPLAGTIPNLSAASAAARLAGLQQAGSVLLVSNLNTEMVTP 123
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D LF LF +YG++ R+K+L K D+AL+QM + QA A+ L ++GK + V SKH
Sbjct: 124 DALFTLFGVYGDVHRVKILFAKKDNALIQMAEPHQANTAMQHLNNLRVWGKNIRVTLSKH 183
Query: 320 PNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ T ++ +S L+RF + +KN+ P+ +HLS +P TEEE++
Sbjct: 184 NQVQLPKEGQPDAGLTKDFTSSPLHRFKKPGSKNFLNIYPPSDTLHLSNIPASTTEEELI 243
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQLQ 430
G V F +K AL+ + E+A +L+ H L GS +++SFS+ Q
Sbjct: 244 DLFTSTGGAVQAFKFFAKDRKMALLKMSSTEEAVHSLIKMHNYQLSGSNHLKVSFSKGQ 302
>gi|388491010|gb|AFK33571.1| unknown [Lotus japonicus]
Length = 457
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 180/337 (53%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H RN+ E +E++L+QL PFG + TK + KNQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEFGDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVT+ + +T++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRHEIV----NNKAPGDVPGNVLLVTMEGVEAGDVTIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQ+ +A +AR++L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKTAGFQALIQFTDAETASLARNALDGRSIPSYLLPQHVGSCNLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP Q AI A
Sbjct: 191 ISYSAHRDLNIKFQSNRSRDYTNPMLPVNQ----------------------TAIDGALQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P T VL++ + + + + + L +FS +G + +I + +N AL+Q
Sbjct: 229 PVVGPDGKRTESESNVLLATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L + +S+H ++
Sbjct: 289 YPDVTTAAAAKEALEGHCIYDGGYCKLHLTYSRHTDL 325
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 41/222 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSA------INALQFYTNVQPTIRGR 71
D++ L F FG + K+ A QAL+Q D +A ++ + + P G
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASLARNALDGRSIPSYLLPQHVGS 186
Query: 72 -NVYVQFSSHQELTTMEQNAQGR----------------------GDEPNR------ILL 102
N+ + +S+H++L Q+ + R G + R +LL
Sbjct: 187 CNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQTAIDGALQPVVGPDGKRTESESNVLL 246
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
TI +M Y +TVEVLH VFS G V+KI F+K+ QALIQY +A A+ +L+G
Sbjct: 247 ATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTTAAAAKEALEGHC 306
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFT--NPNLPAEQ 201
IYDG C+L + +S +L V +++SRD+T +P+L A Q
Sbjct: 307 IYDGGYCKLHLTYSRHTDLNVKAYSDKSRDYTVLDPSLRAAQ 348
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+ A+ +RY +P+K++H LP + TE+E+V G ++NTK K QA V F
Sbjct: 4 STAQQFRYNQTPSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEFGD 63
Query: 402 EEQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S I N
Sbjct: 64 LNQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNN 101
>gi|294461640|gb|ADE76380.1| unknown [Picea sitchensis]
Length = 511
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 183/337 (54%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK+ + +NQA ++ ++ AI + ++
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFAELNQAIAMVSYH 75
Query: 62 TNV--QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
+ Q +RG+ VY+Q+S+ E+ N++ GDE + +LLVTI + ++++VLH
Sbjct: 76 ASSPEQAQVRGKTVYLQYSNRHEIV----NSKNSGDEASNVLLVTIEGVEAGDVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+KSAGFQAL+Q+ +A ARS+L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKIATFEKSAGFQALVQFSDVDTASSARSALDGRSIPRYLLAEHVGPCHLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L V + + RSRD+TNPNLP +AI
Sbjct: 192 ISFSAHTDLNVKFQSHRSRDYTNPNLPVA----------------------PSAIDGTGQ 229
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
G+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 230 FGIGPDGQRREPASNVLLASIENMQYAVTVDVLHTVFSAFGIVQKIAMFEKNAGWQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A +A L+G ++ +L +++S+H ++
Sbjct: 290 YADIPTAVIAKEALEGHFIYAGGYCKLHLSYSRHTDL 326
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 70/260 (26%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q DV +A +A + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDVDTASSA-------RSALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQN---------------------------AQGRGDE 96
+ FS+H +L Q+ G+ E
Sbjct: 181 LAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRRE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +TV+VLH VFS G V+KI F+K+AG+QALIQY P+AV+A+
Sbjct: 241 PASNVLLASIENMQYAVTVDVLHTVFSAFGIVQKIAMFEKNAGWQALIQYADIPTAVIAK 300
Query: 156 SSLQGRNIY-DGCCQLDIQFSNLDELQVNYNNERSRDFTNP-----------------NL 197
+L+G IY G C+L + +S +L V NN+RSRD+T P +L
Sbjct: 301 EALEGHFIYAGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGILQNQLSILGQQPSSL 360
Query: 198 PAEQKGRPSQSGYSEAGVAF 217
PA G+P+ + Y G F
Sbjct: 361 PAGLGGQPTSAPYMYPGNHF 380
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G IVNTK+ + + QA V F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFAELNQAI 69
Query: 407 EALVCKHASS 416
A+V HASS
Sbjct: 70 -AMVSYHASS 78
>gi|66809907|ref|XP_638677.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60467316|gb|EAL65349.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 892
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 148/238 (62%), Gaps = 12/238 (5%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKVIH+RN+ + ++ ++ + +PFGVI L++++ KNQAL+QM ++ SA + +Q+YT
Sbjct: 311 PSKVIHLRNLPSDCTDQEIKSMVEPFGVIENLIIIKGKNQALVQMVELSSATSFIQYYTT 370
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
VQ +IR + +Y QFS+ +E++ ++ PN ILLVTI + Y IT++ L +VFS
Sbjct: 371 VQGSIRSKIIYAQFSNRKEISPAKET-------PNCILLVTISNYFYNITIDELFKVFSH 423
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
+G + KI+ F KS +Q+LI+ + A A++ L G NI + C L IQ+S+L L++
Sbjct: 424 YGTILKILLFTKSGNYQSLIEMKTPEEATKAKNVLDGVNI-NNSCSLKIQYSSLTSLKIK 482
Query: 184 YNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGT 241
YNNE+SRDFT + P+ +G + G+ P + ++++ + PP + G+
Sbjct: 483 YNNEKSRDFT---VMDHHLIDPT-TGLTPPGLLTPPIPGSSSVQRSTYVSPPPLMMGS 536
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
+ T + C ++V+ L + + D LF LF +YG+ +R+K+L N+ D AL+QM QAEL
Sbjct: 680 SSTQNGCVLIVAGLPIENVSPDDLFTLFGIYGDPVRVKILFNRKDTALIQMNTAQQAELV 739
Query: 299 VHFLKGALLFGKRLEVNFSKH-------PNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
+ L G + VN SKH P G T ++ S ++RF +KNY+
Sbjct: 740 LQLLHSFPFKGHSIRVNLSKHKVVQLPRPGEDNGELTKDFTGSPMHRFKLPGSKNYQNIH 799
Query: 352 SPTKMIHLSTLPQ----DVT--EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
P+ +HLS LP D+ E++I G I + K F+ N K AL+ + EQA
Sbjct: 800 PPSSFLHLSNLPDPNGGDMAEIEKKIKQLFTSQGEIKSFKFFQ-NDMKMALIEMGSLEQA 858
Query: 406 TEALVCKHASSLGGSIIRISFSQ 428
+LV H S+G +++SF++
Sbjct: 859 INSLVTLHGCSIGDQFVKVSFAK 881
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
+P+K+IHL LP D T++EI S +E G I N L + GK QALV + E ++
Sbjct: 310 TPSKVIHLRNLPSDCTDQEIKSMVEPFGVIEN--LIIIKGKNQALV--QMVELSSATSFI 365
Query: 412 KHASSLGGSI-IRISFSQLQSIRE 434
++ +++ GSI +I ++Q + +E
Sbjct: 366 QYYTTVQGSIRSKIIYAQFSNRKE 389
>gi|356531748|ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 179/337 (53%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N AI A
Sbjct: 191 ISYSAHKDLNIKFQSNRSRDYTNPMLP----------------------VNYTAIEGAVQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 TAVGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 289 YPDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 42/244 (17%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTN------VQPTIRGR 71
D++ L F FG + K+ A QAL+Q D +A +A + P G
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGS 186
Query: 72 -NVYVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRILL 102
N+ + +S+H++L T +E Q G+ EP + +LL
Sbjct: 187 CNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPESNVLL 246
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY +A AR +L+G
Sbjct: 247 ASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREALEGHC 306
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFT--NPNLPAEQKGRPSQSGYSEAGVAFPQ 219
IYDG C+L + +S +L V +++SRD+T +P+L A Q G P+ +A +P
Sbjct: 307 IYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQ-GPPTAWQNPQAASMYPG 365
Query: 220 MANA 223
A A
Sbjct: 366 SAPA 369
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ + G I+NTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|326511767|dbj|BAJ92028.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 470
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 185/341 (54%), Gaps = 52/341 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E++L++L +PFG I TK + +NQA ++ DV AI+ + ++
Sbjct: 19 PSKVLHLRNLPWECTEDELVELCRPFGRIVNTKSGVGANRNQAFVEFTDVNQAISMVSYF 78
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 79 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQASDVTIDVIH 134
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQY P+A AR +L GR+I + C L
Sbjct: 135 LVFSAFGFVHKIATFEKAAGFQALIQYTDPPTASAAREALDGRSIPRYLLPDHVVSCHLR 194
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L + + + RSRD+TNP LP N++AI +
Sbjct: 195 ISFSAHKDLNIKFQSHRSRDYTNPYLP----------------------VNSSAIDST-- 230
Query: 232 GGLPPGITGTNDRC----TVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDH 284
L P + R VL++++ + + + D L +FS +G + +I + +N
Sbjct: 231 --LQPAVGADGRRVEAEGNVLLASIENMQYAVSVDVLHTVFSAFGTVQKIAIFEKNGGTQ 288
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A + L+G ++ ++ +++S+H ++
Sbjct: 289 ALIQYPDASTATIVKEALEGHCIYDGGYCKIHLSYSRHTDL 329
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 61/279 (21%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D P+A A + + GR++
Sbjct: 131 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDPPTASAARE-------ALDGRSIPRYL 183
Query: 74 ----------YVQFSSHQELTTMEQNAQGR----------------------GDEPNRI- 100
+ FS+H++L Q+ + R G + R+
Sbjct: 184 LPDHVVSCHLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDSTLQPAVGADGRRVE 243
Query: 101 -----LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
LL +I +M Y ++V+VLH VFS G V+KI F+K+ G QALIQY +A + +
Sbjct: 244 AEGNVLLASIENMQYAVSVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDASTATIVK 303
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+L+G IYDG C++ + +S +L V ++++S+D+T P Q+ P +G
Sbjct: 304 EALEGHCIYDGGYCKIHLSYSRHTDLNVKAHSDKSKDYTIPE--GAQQAAPQPAGVP--- 358
Query: 215 VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLN 253
P A + A G PPG+ N V N N
Sbjct: 359 ---PTTAGWQGNSQAAGPYGPPGVAVQNQNTNRQVPNWN 394
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY +P+K++HL LP + TE+E+V G IVNTK + QA V F Q
Sbjct: 11 QQFRYTQTPSKVLHLRNLPWECTEDELVELCRPFGRIVNTKSGVGANRNQAFVEFTDVNQ 70
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A ++V ASS + G + I +S Q I N
Sbjct: 71 AI-SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 105
>gi|3395938|gb|AAC62015.1| polypyrimidine tract-binding protein homolog [Arabidopsis thaliana]
Length = 418
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 176/342 (51%), Gaps = 54/342 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
+ +S +L + + + RSRD+TNP LP Q A
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ--------------------------TAMD 224
Query: 232 GGLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPD 283
G + P + + L+ N+ + D L +FS YG + +I + +N
Sbjct: 225 GSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGST 283
Query: 284 HALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 284 QALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 325
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 132/280 (47%), Gaps = 66/280 (23%)
Query: 15 HEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72
HE+S + + +F FG + K+ A QAL+Q DV +A A + + GR+
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRS 174
Query: 73 V--------------YVQFSSHQELTTMEQNAQGRG------------------------ 94
+ + +S+H +L Q+ + R
Sbjct: 175 IPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGAD 234
Query: 95 ----DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
+ + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+
Sbjct: 235 GKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPT 294
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRPSQ 207
A +A+ +L+G IYD G C+L + +S +L V +++SRD+T P+L QKG P+
Sbjct: 295 AAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG-PAV 353
Query: 208 SGYS-EAGVAFPQMANAAAIAAAFGGG-------LPPGIT 239
SG + AG PQ A + + +GG +P G T
Sbjct: 354 SGSAPPAGWQNPQ---AQSQYSGYGGSHICTHHLIPTGFT 390
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
>gi|268532214|ref|XP_002631235.1| C. briggsae CBR-PTB-1 protein [Caenorhabditis briggsae]
Length = 610
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 17/214 (7%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S+V+HVRN+ ++ + +L+QL +G ++ +ML+ K+QA ++ ++ SA +
Sbjct: 113 TPVSRVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEETSAAAFVTGM 172
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ-----------------GRGDEPNRILLVT 104
T V IRGR ++ Q+S+H+EL + N G +PN +L
Sbjct: 173 TAVPIQIRGRTLFAQYSTHRELKFDKSNKATSDTESVANGSVSNFEVGTQQQPNSVLRTI 232
Query: 105 IHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
I +M++P+++EVLHQ+F+ +G V +I+TF K+ FQALIQ SA +A+ L+ +N+Y
Sbjct: 233 IENMMFPVSLEVLHQLFARYGKVLRIITFNKNNTFQALIQMSEANSAQLAKQGLENQNVY 292
Query: 165 DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
+GCC L I +S L L V YNN++SRD+TNPNLP
Sbjct: 293 NGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP 326
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNL+ ++ D LF LF +YG+++R+K+L NK D+AL+Q + QA+LA+ L
Sbjct: 418 ILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVK 477
Query: 307 LFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ + V SKH N+ + T +Y +S L+RF + +KNY P +HL
Sbjct: 478 WHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHL 537
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG- 418
S +P V+E+++ E G V F K AL E E A +AL+ H L
Sbjct: 538 SNIPATVSEDKLKEMFLEAGYAVKAFKFFPKDHKMALCQLEDIETAIDALIKMHNHKLAE 597
Query: 419 GSIIRISFSQ 428
+ +R+SFS+
Sbjct: 598 NAHLRVSFSK 607
>gi|357147881|ref|XP_003574527.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Brachypodium distachyon]
Length = 459
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 190/354 (53%), Gaps = 49/354 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 14 PSKVLHLRNMPWEATEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 73
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P ++++V+
Sbjct: 74 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFED-VQPNDVSIDVI 128
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C L
Sbjct: 129 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVSICHL 188
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP N AI
Sbjct: 189 RITFSAHKDLNIKFQSHRSRDYTNPYLP----------------------VNPTAIEGIA 226
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
L P VL++++ + + + D L +F+ +G + +I + +N AL+
Sbjct: 227 QLTLGPDGKVKEPESNVLLASIENMQYAVGVDVLHTVFNSFGTVQKIAMFEKNGGMQALI 286
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNITQGAD---THEYMNSN 335
Q D A +A L+G ++ +L +++S+H ++ A + +Y SN
Sbjct: 287 QYPDISTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTASN 340
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 129/263 (49%), Gaps = 53/263 (20%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D P+A+ A ++ GR++
Sbjct: 126 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKN-------SLDGRSIPRYL 178
Query: 74 ----------YVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
+ FS+H++L T +E AQ G+ E
Sbjct: 179 LPEHVSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQLTLGPDGKVKE 238
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y + V+VLH VF+ G V+KI F+K+ G QALIQY +A VA+
Sbjct: 239 PESNVLLASIENMQYAVGVDVLHTVFNSFGTVQKIAMFEKNGGMQALIQYPDISTAAVAK 298
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+L+G IYDG C+L + +S +L V ++ERSRD+T N A+ + G S AG
Sbjct: 299 QALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTASNPSAQVQAAGQAPGLSTAG 358
Query: 215 VAFPQMANAAAIAAAFGGGLPPG 237
VA+ AA+ + GG P G
Sbjct: 359 VAWQNTTPAASFYPSSAGGNPVG 381
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+ + +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWEATEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 402 EEQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ QA ++V +ASS + G + I +S Q I N
Sbjct: 63 QNQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 100
>gi|86170640|ref|XP_966055.1| polypyrimidine tract binding protein, putative [Plasmodium
falciparum 3D7]
gi|46362297|emb|CAG25235.1| polypyrimidine tract binding protein, putative [Plasmodium
falciparum 3D7]
Length = 663
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 133/496 (26%), Positives = 231/496 (46%), Gaps = 89/496 (17%)
Query: 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN-QALLQMQDV------PSAINALQ 59
V+ ++NV ++ E D++ +PF LR KN + + QD+ I ++
Sbjct: 179 VLLLKNVPEKVDEEDIISFMRPF--------LRNKNPEIIFDGQDIIVKLYDDELIESIY 230
Query: 60 FYTNVQPT-IRGRNVYVQFS---------------------------------------- 78
Y N PT I+G V V+ S
Sbjct: 231 TYFNEHPTQIKGSFVKVKLSHIIDDNKESMEEQNDILNNYNNNNNNYSSSSSNNNNYSFY 290
Query: 79 -----SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133
+H ++N++ E ++++LV++ ++ YP+ +E+++ +FS G VEKI+TF
Sbjct: 291 HTNHNNHPTDVLDKRNSKSNKAECSKVILVSVINLHYPVDIELIYYLFSKCGTVEKIITF 350
Query: 134 QKS-AGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF 192
++ +QAL+Q+ +A A +L RNIYDGC ++IQ+S L EL + NN S D+
Sbjct: 351 SRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYSFLKELVIKGNNSSSWDY 410
Query: 193 T------NPNLPAEQKGR---PSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTND 243
T N P Q P+ S S + M + + P T
Sbjct: 411 TISNEKKTKNFPVLQNSHGVLPTPSRKSVDSELYQLMEKKFKLVDF--EKMNPSKTPV-- 466
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
++ N+ + D +KLFNLFS+YG + RIK+LR KPD AL+Q + + LA +L+
Sbjct: 467 ---LICYNIPKEYTDVNKLFNLFSIYGFVTRIKILREKPDAALIQYSNYIFSSLAQEYLQ 523
Query: 304 GALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
A + + +EVNFSK +I + +T + N + + K + C PTK
Sbjct: 524 RARISNQSIEVNFSKIHDIRVSQRQQNNESHNTKIFSNYDQRYVLSDQGKYIKAACRPTK 583
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFE--TEEQATEALVCK 412
+ +S L ++V E+ +++ ++G+I + + GK+ ++ E TE+ AT+AL+
Sbjct: 584 CLFISNLNENVNEDCVMNLFNKYGNINKLQFLPVKEGKRHLSIIVEMNTEDMATKALMDL 643
Query: 413 HASSLGGSIIRISFSQ 428
H L I++S+++
Sbjct: 644 HNFYLKDRYIKVSYTK 659
>gi|15232047|ref|NP_186764.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
gi|75336151|sp|Q9MAC5.1|PTBP1_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 1
gi|6714473|gb|AAF26159.1|AC008261_16 putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
gi|222423255|dbj|BAH19604.1| AT3G01150 [Arabidopsis thaliana]
gi|332640095|gb|AEE73616.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
Length = 399
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 176/342 (51%), Gaps = 54/342 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
+ +S +L + + + RSRD+TNP LP Q A
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ--------------------------TAMD 224
Query: 232 GGLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPD 283
G + P + + L+ N+ + D L +FS YG + +I + +N
Sbjct: 225 GSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGST 283
Query: 284 HALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 284 QALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 325
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 59/266 (22%)
Query: 15 HEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72
HE+S + + +F FG + K+ A QAL+Q DV +A A + + GR+
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRS 174
Query: 73 V--------------YVQFSSHQEL---------------------TTMEQN------AQ 91
+ + +S+H +L T M+ + A
Sbjct: 175 IPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGAD 234
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ E + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+
Sbjct: 235 GKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPT 294
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRPSQ 207
A +A+ +L+G IYD G C+L + +S +L V +++SRD+T P+L QKG P+
Sbjct: 295 AAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG-PAV 353
Query: 208 SGYS-EAGVAFPQMANAAAIAAAFGG 232
SG + AG PQ A + + +GG
Sbjct: 354 SGSAPPAGWQNPQ---AQSQYSGYGG 376
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
>gi|326428995|gb|EGD74565.1| hypothetical protein PTSG_05929 [Salpingoeca sp. ATCC 50818]
Length = 554
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 222/477 (46%), Gaps = 91/477 (19%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+H+R++ + D+ +PFG I + ++ ++Q L + DV +A + Y++
Sbjct: 15 PSPVVHIRSLPPHTTPQDIHAALEPFGAIVNVSLIPNRSQGLAEFTDVHTASRCV--YSS 72
Query: 64 VQPT----IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQ 119
Q T ++GR VY+ FS+ Q++ T + P ++L++T+ + YPI V+V++
Sbjct: 73 QQGTQPVFVKGRQVYINFSTSQKVHTQAGDTSQPYAVPGKVLMMTVMNASYPINVDVIYA 132
Query: 120 VFSPHGFVEKIVTFQKSAGFQ-------ALIQYQLRPSAVVARSSLQGRNIYDGCCQLDI 172
V SP G V +IV +K+ G Q AL+++ +A SSLQG NIY GCC L I
Sbjct: 133 VCSPLGRVLRIVMIRKN-GVQSAPPTARALVEFPDANTAAAVMSSLQGANIYQGCCTLRI 191
Query: 173 QFSNLDELQVNYNNERSRDFT------------------------------------NPN 196
++S D + V YN+E +RDFT +P
Sbjct: 192 EYSKADRVNVRYNSEETRDFTVNLPPPPAAPAHGGYGSGAPQHGHHHHGGAPAHHAPDPY 251
Query: 197 LPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG-----GLPPGITGTNDRCTVLVSN 251
P G +S Y G A++GG PP + ++V +
Sbjct: 252 DPYRSGGYQPRSSYPPRGAQ-----------ASWGGERRPRPCPPSVV-------LMVYH 293
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
+N I KLFNLF LY N I+IK+L ++ A+ Q D QA+ + L+G + G+R
Sbjct: 294 INKGSISCQKLFNLFCLYANPIKIKVLVSRDGMAMAQFEDLDQAKSVLEMLEGVEVQGQR 353
Query: 312 LEVNFSKHPNITQGADTHEYMNSNLNRFN--RNAAKNY-RY----------CCSPTKMIH 358
+E+ +S++ +T+ + + S L R+A K++ R+ PT +
Sbjct: 354 IELGYSRNQELTE-SPAEVTLPSGLPAMEDFRDAQKHHMRFKDGKPEPGLEVSKPTATLK 412
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLF---EMNGKKQALVLFETEEQATEA-LVC 411
+P + +++++ L + + ++ + +GK + + QAT+A LVC
Sbjct: 413 FYDVPDNFSKDDVNKILGLYAAPSPMEVTVERDESGKVYGYLKYHYANQATDAVLVC 469
>gi|356568676|ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 179/337 (53%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N AI A
Sbjct: 191 ISYSAHKDLNIKFQSNRSRDYTNPMLP----------------------VNYTAIEGAVQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 TAVGPDGKRKEPDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 289 YPDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 39/215 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTN------VQPTIRGR 71
D++ L F FG + K+ A QAL+Q D +A +A + P G
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGS 186
Query: 72 -NVYVQFSSHQEL---------------------TTMEQNAQ------GRGDEPNR-ILL 102
N+ + +S+H++L T +E Q G+ EP+ +LL
Sbjct: 187 CNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPDSNVLL 246
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY +A AR +L+G
Sbjct: 247 ASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREALEGHC 306
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
IYDG C+L + +S +L V +++SRD+T P+
Sbjct: 307 IYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPD 341
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|225452859|ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
[Vitis vinifera]
gi|296082938|emb|CBI22239.3| unnamed protein product [Vitis vinifera]
Length = 449
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 181/337 (53%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQ+ +A AR++L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N AI
Sbjct: 191 ISYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAIEGIAQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
L P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 PALGPDGKKKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A +A L+G ++ +L +++S+H ++
Sbjct: 289 YPDVTTAAVAKEALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 53/222 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D +A +A + GR++
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARN-------ALDGRSIPRYL 179
Query: 74 ----------YVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
+ +S+H +L T +E AQ G+ E
Sbjct: 180 LPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPALGPDGKKKE 239
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+
Sbjct: 240 PESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAK 299
Query: 156 SSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+L+G IYD G C+L + +S +L V +++RSRD+T P+
Sbjct: 300 EALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDRSRDYTIPD 341
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + TEEE+V + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNN 101
>gi|326494672|dbj|BAJ94455.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528325|dbj|BAJ93344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 186/338 (55%), Gaps = 46/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 14 PSKVLHLRNMPWESTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 73
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P ++++V+
Sbjct: 74 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVSIDVI 128
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C L
Sbjct: 129 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLADHVSICHL 188
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP + G+ P + + I
Sbjct: 189 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNPT--------AIEGITQPILGSDGMI---- 236
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
VL++++ + + + D L +FS +G + +I + +N AL+
Sbjct: 237 ----------KEPESNVLLASIENMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALI 286
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
Q D A +A L+G ++ +L +++S+H ++
Sbjct: 287 QYPDITTAGVAKQALEGHCIYDGGYCKLHLSYSRHTDL 324
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 53/219 (24%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D P+A+ A + ++ GR++
Sbjct: 126 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEA-------KNSLDGRSIPRYL 178
Query: 74 ----------YVQFSSHQELTTMEQNAQGRG---------------------------DE 96
+ FS+H++L Q+ + R E
Sbjct: 179 LADHVSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGITQPILGSDGMIKE 238
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y + V+VLH VFS G V+KI F+K+ G QALIQY +A VA+
Sbjct: 239 PESNVLLASIENMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAK 298
Query: 156 SSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFT 193
+L+G IYD G C+L + +S +L V ++ERSRD+T
Sbjct: 299 QALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 337
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+ + +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWESTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 402 EEQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ QA ++V +ASS + G + I +S Q I N
Sbjct: 63 QNQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 100
>gi|335775957|gb|AEH58745.1| heterogeneous nuclear ribonucleoprotein L-lik-like protein [Equus
caballus]
Length = 424
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 193/408 (47%), Gaps = 60/408 (14%)
Query: 50 DVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIH 106
++ SA + F + I G+ + +S+ + +T G D+P N++LL++I
Sbjct: 2 NIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQ 56
Query: 107 HMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166
+ LYPITV+VL+ V +P G V++IV F+++ G QA+++++ A A+++L G +IY G
Sbjct: 57 NPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG 115
Query: 167 CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSE 212
CC L I+++ L V N+ S D+T P L +G+ Q GY
Sbjct: 116 CCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGS 175
Query: 213 AGVAFP-----QMAN-----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR 256
G P +M + A ++ GG P G V+VS L+ +
Sbjct: 176 HGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLK 228
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
++ ++FNLF LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V
Sbjct: 229 MNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCV 288
Query: 317 SKHPNIT--------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SK ++ G ++ ++ S NRF + P+ ++H +P VT
Sbjct: 289 SKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVT 348
Query: 368 EEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEALV 410
EE +H + K + K A L+ +E + A EAL
Sbjct: 349 EETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 396
>gi|357119737|ref|XP_003561590.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Brachypodium distachyon]
Length = 522
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 175/324 (54%), Gaps = 49/324 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ DV AI+ + ++
Sbjct: 19 PSKVLHLRNLPWECTEEELVELCKPFGRIVNTKSGVGANRNQAFVEFTDVNQAISMVSYF 78
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 79 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQASDVTIDVIH 134
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQY P+A AR +L GR+I + C L
Sbjct: 135 LVFSAFGFVHKIATFEKAAGFQALIQYTDAPTASAAREALDGRSIPRYLLPEHVLSCHLR 194
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L + + + RSRD+TNP LP N++AI +
Sbjct: 195 ISFSAHKDLNIKFQSHRSRDYTNPYLP----------------------VNSSAIDST-- 230
Query: 232 GGLPPGITGTNDRC----TVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDH 284
L P + R VL++++ + + + D L +FS +G + +I + +N
Sbjct: 231 --LQPAVGADGRRVEAEGNVLLASIENMQYAVSVDVLHTVFSTFGTVQKIAIFEKNGGTQ 288
Query: 285 ALVQMGDGFQAELAVHFLKGALLF 308
AL+Q D A +A L+G ++
Sbjct: 289 ALIQYPDVTTATVAKEALEGHCIY 312
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 52/191 (27%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D P+A A + + GR++
Sbjct: 131 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTASAARE-------ALDGRSIPRYL 183
Query: 74 ----------YVQFSSHQELTTMEQNAQGR----------------------GDEPNRI- 100
+ FS+H++L Q+ + R G + R+
Sbjct: 184 LPEHVLSCHLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDSTLQPAVGADGRRVE 243
Query: 101 -----LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
LL +I +M Y ++V+VLH VFS G V+KI F+K+ G QALIQY +A VA+
Sbjct: 244 AEGNVLLASIENMQYAVSVDVLHTVFSTFGTVQKIAIFEKNGGTQALIQYPDVTTATVAK 303
Query: 156 SSLQGRNIYDG 166
+L+G IYDG
Sbjct: 304 EALEGHCIYDG 314
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY +P+K++HL LP + TEEE+V + G IVNTK + QA V F Q
Sbjct: 11 QQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGRIVNTKSGVGANRNQAFVEFTDVNQ 70
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A ++V ASS + G + I +S Q I N
Sbjct: 71 AI-SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 105
>gi|219363125|ref|NP_001137030.1| uncharacterized protein LOC100217199 [Zea mays]
gi|194698066|gb|ACF83117.1| unknown [Zea mays]
gi|414870440|tpg|DAA48997.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 296
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 135/211 (63%), Gaps = 18/211 (8%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L+ L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + G C +
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHIGACHM 189
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQ 201
I FS +L + + + RSRD+TNP LP Q
Sbjct: 190 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNQ 220
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 51/168 (30%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D P+A+ A + ++ GR++
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEA-------KNSLDGRSIPKYLLPEHI 184
Query: 74 -----YVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRI 100
+ FS+H++L T +E Q G+ EP + +
Sbjct: 185 GACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 244
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY R
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPER 292
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|221058202|ref|XP_002261609.1| polypyrimidine tract binding protein [Plasmodium knowlesi strain H]
gi|194247614|emb|CAQ41014.1| polypyrimidine tract binding protein, putative [Plasmodium knowlesi
strain H]
Length = 663
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 184/358 (51%), Gaps = 34/358 (9%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA-GFQALIQYQLRPSAVV 153
+E +R++LV++ ++ YP+ +++++ +FS G VEKI+ F ++ +QAL+Q+Q +A
Sbjct: 313 NESSRVILVSVLNLHYPVDIDLIYYLFSKCGPVEKIIAFSRNPLIYQALVQFQNIETAQE 372
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG---------- 203
A +L RNIYDGC + IQ+S L EL V NN SRD+T ++
Sbjct: 373 AIKTLHNRNIYDGCNTIQIQYSFLKELNVKANNSSSRDYTTTDVSKNNNPVNIQTSHGVL 432
Query: 204 -RPSQSGY-SEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
P+Q G SE + + A P ++ N+ D D K
Sbjct: 433 PTPTQKGNDSELYLILERKFKLVDFDAKNASKTP----------VLICYNIAKDYTDVHK 482
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LFNLFS+YG + RIK+LR KPD AL+Q A +A L+ + + G+ LE+NFSK +
Sbjct: 483 LFNLFSVYGFVSRIKILREKPDCALIQYAGHLFASVAQECLQHSKIDGQVLEINFSKILD 542
Query: 322 IT---QGADTHEYMNSNLNRFNR-----NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
I Q Y + + +++ + AK R C PT+ + +S + ++VTEE +++
Sbjct: 543 IRIAPQQKKIESYKAKSFSSYDQRYLVTDQAKYIRGACKPTRTLFISNVSEEVTEECMMN 602
Query: 374 HLEEHGSIVNTKLFEM-NGKKQALVLFE--TEEQATEALVCKHASSLGGSIIRISFSQ 428
++G I K+ GKK + E +E+ AT AL+ H L I++S+++
Sbjct: 603 LFTKYGEIKKIKIQPAREGKKHMTITVELSSEDAATMALMDLHNFYLKDRFIKVSYTK 660
>gi|350413134|ref|XP_003489890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Bombus
impatiens]
Length = 479
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 192/414 (46%), Gaps = 78/414 (18%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
++PN +LL TI + +YPITVEVLH + +P G V++IV F+K+ G QA++++ SA A
Sbjct: 40 NKPNHVLLFTIINPVYPITVEVLHAISAPSGQVQRIVIFKKN-GVQAMVEFDTVESATRA 98
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL-------PAEQKGRPS- 206
+ +L G +IY GCC L I F+ +L V N+ S D+T P L A GRP+
Sbjct: 99 KETLHGADIYSGCCTLKIDFAKPTKLNVYKNDAESWDYTTPTLGSSAHKNDATGNGRPAP 158
Query: 207 -----------QSGYSEAGVAFPQMA---------NAAA-----------IAAAFGGGLP 235
Q S V FP A N A I + F G P
Sbjct: 159 LLAEPRYGAAPQPYGSTPQVTFPPGAGHDRYEENFNGPATYPEPYVERYGIKSDFSGREP 218
Query: 236 -------PGITGT--------NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN 280
PG T ++V L D+++ DKLFNLF LYGN+ ++K L+
Sbjct: 219 LHPTPPRPGYVPTLGQTPPSSTQGSVMMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKT 278
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK--------HPNI--TQGADTH 329
K A++QMGD E + L + RL++ FSK +P I + A
Sbjct: 279 KEGCAMIQMGDNIAVERCLQNLNNVTIGTDGRLQLGFSKQAFLSDVTNPYILPDKTASFK 338
Query: 330 EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLF 387
++ S NRF A N P+K++H P D+TEE + E G + KLF
Sbjct: 339 DFTGSKNNRFLNPAMANKNRIQPPSKIVHFFNTPPDLTEETVHRVFVERGIEAPTTVKLF 398
Query: 388 EMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS------IIRISFSQLQSI 432
+ ++ + L+ F + A A++ C H ++L S I+++ FS ++I
Sbjct: 399 PLKSERSSSGLIEFSSVGIAVAAIMECNH-TALENSNGKFPYIMKLCFSSSRTI 451
>gi|268530642|ref|XP_002630447.1| Hypothetical protein CBG11180 [Caenorhabditis briggsae]
Length = 604
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 206/470 (43%), Gaps = 73/470 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG I + AL++ +++ A + +
Sbjct: 32 PSIVVHVRNLHQKVTEADLLEALSTFGPIAYATCIPHSRMALVEFENLDGAKACVNYAAT 91
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
T+ G+ +S+ Q + M G PN++L+VT+ + YPI +V+H + S
Sbjct: 92 NNVTVGGQAALFNYSTSQCIERM----GFEGSTPNKVLVVTVLNATYPIDADVIHTISSS 147
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 148 QGKVLRVAVMHKPTVVQALVEFESVEVAKAAKHAMNGADIYAGCCTLKVEFAKPDRVRVT 207
Query: 184 YNNERSRDFT---------------NPNLPAEQK-------------GRP-SQSGYSEAG 214
++ RDFT PN P + + G P SQ+ Y +G
Sbjct: 208 RQDKDQRDFTLADHELPQDSGRRTLIPNKPDDHRRPYPEPRDQYDRYGSPQSQAQYGYSG 267
Query: 215 VAFPQMANAAAIAAAFGGGLPPGITGT------NDR--------------CTVLVSNLNS 254
A +G PP G NDR C ++V L+
Sbjct: 268 RAL------LPTQDFYGNSGPPQQQGGGYYEEYNDRRRPQQQYGGLGGPGCVMMVYGLDH 321
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE- 313
D+I+ D LFN+ YGN++RI +R K + +++MG Q + + L+G L G +LE
Sbjct: 322 DKINCDMLFNILCQYGNVLRISFMRTKTETGIIEMGQPNQRQDVLDHLQGTELCGLKLEF 381
Query: 314 -------VNFSKHPNITQGADT--HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 364
V++ + P + +Y +S RF PTK++H P
Sbjct: 382 KPSHQECVHYLREPFLLPDGTPSFKDYTSSRNQRFTTEELSMKNRIVFPTKVLHWFNAPG 441
Query: 365 DVTEEEIVSHLEE--HGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
+ E +++ + E H + ++F ++ A V F+T E A E L
Sbjct: 442 TMDEAKLLDMIAEKSHHKPIKVEVFPSRNERSAAGTVEFDTVEAANEVLA 491
>gi|357147883|ref|XP_003574528.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Brachypodium distachyon]
Length = 313
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 173/320 (54%), Gaps = 41/320 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 14 PSKVLHLRNMPWEATEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 73
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHML-YPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + ++++V+H
Sbjct: 74 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEDVQPNDVSIDVIH 129
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C L
Sbjct: 130 LVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVSICHLR 189
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L + + + RSRD+TNP LP N AI
Sbjct: 190 ITFSAHKDLNIKFQSHRSRDYTNPYLP----------------------VNPTAIEGIAQ 227
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
L P VL++++ + + + D L +F+ +G + +I + +N AL+Q
Sbjct: 228 LTLGPDGKVKEPESNVLLASIENMQYAVGVDVLHTVFNSFGTVQKIAMFEKNGGMQALIQ 287
Query: 289 MGDGFQAELAVHFLKGALLF 308
D A +A L+G ++
Sbjct: 288 YPDISTAAVAKQALEGHCIY 307
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 52/191 (27%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D P+A+ A + ++ GR++
Sbjct: 126 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEA-------KNSLDGRSIPRYL 178
Query: 74 ----------YVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
+ FS+H++L T +E AQ G+ E
Sbjct: 179 LPEHVSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQLTLGPDGKVKE 238
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y + V+VLH VF+ G V+KI F+K+ G QALIQY +A VA+
Sbjct: 239 PESNVLLASIENMQYAVGVDVLHTVFNSFGTVQKIAMFEKNGGMQALIQYPDISTAAVAK 298
Query: 156 SSLQGRNIYDG 166
+L+G IYDG
Sbjct: 299 QALEGHCIYDG 309
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+ + +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWEATEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 402 EEQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ QA ++V +ASS + G + I +S Q I N
Sbjct: 63 QNQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 100
>gi|340708741|ref|XP_003392980.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Bombus
terrestris]
Length = 479
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 192/414 (46%), Gaps = 78/414 (18%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
++PN +LL TI + +YPITVEVLH + +P G V++IV F+K+ G QA++++ SA A
Sbjct: 40 NKPNHVLLFTIINPVYPITVEVLHAISAPSGQVQRIVIFKKN-GVQAMVEFDTVESATRA 98
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL-------PAEQKGRPS- 206
+ +L G +IY GCC L I F+ +L V N+ S D+T P L A GRP+
Sbjct: 99 KETLHGADIYSGCCTLKIDFAKPTKLNVYKNDAESWDYTTPTLGSSAHKNDATGNGRPAP 158
Query: 207 -----------QSGYSEAGVAFPQMA---------NAAA-----------IAAAFGGGLP 235
Q S V FP A N A I + F G P
Sbjct: 159 LLAEPRYGAAPQPYGSTPQVTFPPGAGHDRYEENFNGPATYPEPYVERYGIKSDFSGREP 218
Query: 236 -------PGITGT--------NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN 280
PG T ++V L D+++ DKLFNLF LYGN+ ++K L+
Sbjct: 219 IHPTPPRPGYVPTLGQTPPSSTQGSVMMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKT 278
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK--------HPNI--TQGADTH 329
K A++QMGD E + L + RL++ FSK +P I + A
Sbjct: 279 KEGCAMIQMGDNIAVERCLQNLNNVTIGTDGRLQLGFSKQAFLSDVTNPYILPDKTASFK 338
Query: 330 EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLF 387
++ S NRF A N P+K++H P D+TEE + E G + KLF
Sbjct: 339 DFTGSKNNRFLNPAMANKNRIQPPSKIVHFFNTPPDLTEETVHRVFVERGIEAPTTVKLF 398
Query: 388 EMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS------IIRISFSQLQSI 432
+ ++ + L+ F + A A++ C H ++L S I+++ FS ++I
Sbjct: 399 PLKSERSSSGLIEFSSVGIAVAAIMECNH-TALENSNGKFPYIMKLCFSSSRTI 451
>gi|116787007|gb|ABK24339.1| unknown [Picea sitchensis]
Length = 491
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 183/337 (54%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANHNQAFVEFADLNQAIAMVSYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG++VY+Q+S+ QE+ N + GD + +LLVTI + ++++VLH
Sbjct: 76 ASSSEPAQVRGKSVYLQYSNRQEIV----NNKSTGDVASNVLLVTIEGVDSGDVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + C L
Sbjct: 132 LVFSAFGFVHKIATFEKTAGFQALVQFSDADTAASARSALDGRSIPRYLLPEHVASCHLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L V + + RSRD+TNPNLP N +AI A
Sbjct: 192 ISFSAHTDLNVKFQSHRSRDYTNPNLP----------------------VNPSAIDGAGQ 229
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 230 FTVGPDGKRRELESNVLLASIENMQYAVTVDVLNTVFSAFGRVQKIAIFEKNGGFQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A LA L+G ++ +L +++S+H ++
Sbjct: 290 YPDIATAVLAKEALEGHCIYDGGYCKLHLSYSRHTDL 326
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 113/229 (49%), Gaps = 56/229 (24%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A +A + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDADTAASA-------RSALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQNAQGR----------------------GDEPNR-- 99
+ FS+H +L Q+ + R G + R
Sbjct: 181 LPEHVASCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVNPSAIDGAGQFTVGPDGKRRE 240
Query: 100 ----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+LL +I +M Y +TV+VL+ VFS G V+KI F+K+ GFQALIQY +AV+A+
Sbjct: 241 LESNVLLASIENMQYAVTVDVLNTVFSAFGRVQKIAIFEKNGGFQALIQYPDIATAVLAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN---LPAE 200
+L+G IYDG C+L + +S +L V NN+RSRD+T P LPA+
Sbjct: 301 EALEGHCIYDGGYCKLHLSYSRHTDLNVKGNNDRSRDYTIPASGMLPAQ 349
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G IVNTK QA V F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANHNQAFVEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A+V +ASS + G + + +S Q I N
Sbjct: 70 -AMVSYYASSSEPAQVRGKSVYLQYSNRQEIVNN 102
>gi|168027197|ref|XP_001766117.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682760|gb|EDQ69176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 488
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 190/352 (53%), Gaps = 42/352 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+HVRN+ E SE +L++L +PFG + TK+ + NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFVEFADLNQAIAMVSYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ T ++ GD + +LLVTI + ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVT----SKNSGDVASNVLLVTIEGVEAGDVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+KSAGFQAL+Q+ +A A+S+L+GR+I + G C L
Sbjct: 132 LVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAAKSALEGRSIPRYLLPDHVGPCHLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS ++L V + + RSRD+TNP LP +A + F
Sbjct: 192 ISFSAHNDLNVKFQSHRSRDYTNPYLPVA--------------------PSAIDGSGQFS 231
Query: 232 GGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLLRNKPD-HALVQM 289
G P G + +LVS N + D + +FS +G + +I + ALVQ
Sbjct: 232 VG-PDGKRREPESNVLLVSIENMQYAVTIDVIHTVFSAFGFVQKIAIFEKSAGFQALVQY 290
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNITQGADTHEYMNSNLNR 338
D A A L+G ++ +L +++S+H ++ A + Y+N++ +R
Sbjct: 291 PDIPTAVGAKEALEGHCIYDGGFCKLHLSYSRHTDLNVKALSLLYVNNDRSR 342
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 116/233 (49%), Gaps = 59/233 (25%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A A + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAA-------KSALEGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQN---------------------------AQGRGDE 96
+ FS+H +L Q+ G+ E
Sbjct: 181 LPDHVGPCHLRISFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGSGQFSVGPDGKRRE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LLV+I +M Y +T++V+H VFS GFV+KI F+KSAGFQAL+QY P+AV A+
Sbjct: 241 PESNVLLVSIENMQYAVTIDVIHTVFSAFGFVQKIAIFEKSAGFQALVQYPDIPTAVGAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVN------YNNERSRDFTNPNLPAEQ 201
+L+G IYDG C+L + +S +L V NN+RSRD+TNP LPA Q
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLNVKALSLLYVNNDRSRDYTNPGLPATQ 353
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++H+ LP + +EEE++ + G +VNTK+ QA V F QA
Sbjct: 10 FRYTQPPSKVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFVEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSI 432
A+V +ASS + G + + +S Q I
Sbjct: 70 -AMVSYYASSSEPAQVRGKTVYLQYSNRQEI 99
>gi|7497376|pir||T15805 hypothetical protein C44B7.2 - Caenorhabditis elegans
Length = 493
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 202/453 (44%), Gaps = 61/453 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG + + AL++ +D+ A + F T+
Sbjct: 33 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFATS 92
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G+ +S+ Q + M + PN++L+VT+ + YPI +V++Q+ +
Sbjct: 93 NQINVGGQGALFNYSTSQCIERMGFESA----TPNKVLVVTVLNAQYPIDADVIYQISNA 148
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 149 QGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAKPDRVRVQ 208
Query: 184 YNNERSRDFTNPN--LPAEQKGR---------PSQSGYSEAGVAFPQMANAAAIAAAFGG 232
++ RDFT P+ P E PS GYS G + +GG
Sbjct: 209 RQDKDQRDFTLPDNRRPYEDDRNHYDRHDYQAPSSYGYSSRG---------GGHSDYYGG 259
Query: 233 --GLPPGI-----------------TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
G PP G C +++ L +I+ D LFN+ YGN++
Sbjct: 260 DRGGPPHPPPSRYRDDYEDRGYAQPAGGGPGCVMMIYGLEHGKINCDMLFNILCQYGNVL 319
Query: 274 RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADT----- 328
RI +R K + ++++G + + + FL+G+ LFG LE S + D
Sbjct: 320 RISFMRTKTETGIIELGTPEERQNVLDFLQGSALFGLTLEFKPSHQECVHHLRDPFLLPD 379
Query: 329 -----HEYMNSNLNRFNRN--AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG-- 379
+Y +S RF+ AAKN PT +H P + E+ ++ + E
Sbjct: 380 GSPSFKDYSSSRNQRFSTPELAAKN--RIIFPTNTLHWFNAPGTMDEQALLDLMAEKTEH 437
Query: 380 SIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
V +F ++ A FET E A E L
Sbjct: 438 KPVKIDIFPSRNERSAAGTAEFETVEIANEVLA 470
>gi|307189437|gb|EFN73847.1| Polypyrimidine tract-binding protein 2 [Camponotus floridanus]
Length = 352
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 155/341 (45%), Gaps = 70/341 (20%)
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
SL G+N+Y+ CC L I +S + L V YNN++SRD+TNPNLP + S + G
Sbjct: 10 SLDGQNVYNSCCTLRIDYSKMQNLNVKYNNDKSRDYTNPNLPTGDANLDAAS-LALGGEL 68
Query: 217 FPQMANAA---------------------AIAAAFG---------GGLPPGITGTND--- 243
PQ+ A +IA A G GLP + G +
Sbjct: 69 LPQLLMGAGSQPRARIPVIITSSELPEVESIAGAPGVLPTPFAAMHGLPSPLAGPYNGVP 128
Query: 244 ----------------------------RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI 275
+LVSNLN + + D LF LF +YG++ R+
Sbjct: 129 PAGGLAGLGGFPLGAAGLGVRVQGSAQASAVLLVSNLNEEMVTPDALFTLFGVYGDVQRV 188
Query: 276 KLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADT 328
K+L NK D AL+QM + QA LA+ + +FGK+++V SKH + T
Sbjct: 189 KILYNKKDSALIQMAEPHQALLALTHMDKLRVFGKQIKVMLSKHQTVQLPKEGQPDAGLT 248
Query: 329 HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
+Y NS L+RF + +KNY+ P+ +HLS +P V EEEI ++G V F
Sbjct: 249 KDYTNSTLHRFKKPGSKNYQNIYPPSATLHLSNIPATVAEEEIKDAFTKNGFTVKAFKFF 308
Query: 389 MNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 428
+K AL+ + A AL+ H L S +R+SFS+
Sbjct: 309 PKDRKMALIQMPNMDDAVAALIKMHNYQLSESNHLRVSFSK 349
>gi|294463038|gb|ADE77057.1| unknown [Picea sitchensis]
Length = 528
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 186/337 (55%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK+ + +NQA ++ D+ AI+ + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKIINTKVNVGANRNQAFVEFADLNQAISMVSYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N++ GD + +LLVTI + ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NSKNTGDVASNVLLVTIEGVEAGDVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+KSAGFQAL+Q+ +A A+++L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKIATFEKSAGFQALVQFSDPNTATSAKNALDGRSIPRYLLPEHVGLCSLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS ++L V + + RSRD+TNP LP +AI
Sbjct: 192 ITFSAHNDLNVKFQSHRSRDYTNPYLPVA----------------------PSAIDGTGQ 229
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
G+ P VL++++ + + + D L ++F+ +G + +I + +N AL+Q
Sbjct: 230 FGIGPDGKRREPESNVLLASIENMQYAVTLDVLRSVFTAFGTVQKIAIFEKNAGFQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 290 YPDVATAVTAKEALEGHCIYDGGFCKLHLSYSRHTDL 326
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 53/222 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A T+ + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDPNTA-------TSAKNALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQN---------------------------AQGRGDE 96
+ FS+H +L Q+ G+ E
Sbjct: 181 LPEHVGLCSLRITFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGTGQFGIGPDGKRRE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +T++VL VF+ G V+KI F+K+AGFQALIQY +AV A+
Sbjct: 241 PESNVLLASIENMQYAVTLDVLRSVFTAFGTVQKIAIFEKNAGFQALIQYPDVATAVTAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+L+G IYDG C+L + +S +L V NN+RSRD+T+PN
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLNVKVNNDRSRDYTSPN 342
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G I+NTK+ + QA V F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIINTKVNVGANRNQAFVEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSI 432
++V +ASS + G + + +S Q I
Sbjct: 70 -SMVSYYASSSEPAQVRGKTVYLQYSNRQEI 99
>gi|168060645|ref|XP_001782305.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666235|gb|EDQ52895.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 184/353 (52%), Gaps = 45/353 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+HVRN+ E SE +L++L +PFG + TK+ + NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFVEFADLNQAIAMVSYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ T ++ GD + +LLVTI + ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVT----SKNSGDVASNVLLVTIEGVEAGDVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+KSAGFQAL+Q+ +A A+S+L+GR+I + G C L
Sbjct: 132 LVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAAKSALEGRSIPRYLLPDHVGPCHLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS ++L V + + RSRD+TNP LP +S
Sbjct: 192 ISFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGSGQFSVG------------------ 233
Query: 232 GGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLLRNKPD-HALVQM 289
P G + +LVS N + D + +FS +G + +I + ALVQ
Sbjct: 234 ---PDGKRREPESNVLLVSIENMQYAVTIDVIHTVFSAFGFVQKIAIFEKSAGFQALVQY 290
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNITQGAD---THEYMNSNL 336
D A A L+G ++ +L +++S+H ++ + + +Y N L
Sbjct: 291 PDIPTAVGAKEALEGHCIYDGGFCKLHLSYSRHTDLNVKVNNDRSRDYTNPGL 343
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 115/227 (50%), Gaps = 53/227 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A A + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAA-------KSALEGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQN---------------------------AQGRGDE 96
+ FS+H +L Q+ G+ E
Sbjct: 181 LPDHVGPCHLRISFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGSGQFSVGPDGKRRE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LLV+I +M Y +T++V+H VFS GFV+KI F+KSAGFQAL+QY P+AV A+
Sbjct: 241 PESNVLLVSIENMQYAVTIDVIHTVFSAFGFVQKIAIFEKSAGFQALVQYPDIPTAVGAK 300
Query: 156 SSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ 201
+L+G IYD G C+L + +S +L V NN+RSRD+TNP LP Q
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLNVKVNNDRSRDYTNPGLPPTQ 347
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++H+ LP + +EEE++ + G +VNTK+ QA V F QA
Sbjct: 10 FRYTQPPSKVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFVEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSI 432
A+V +ASS + G + + +S Q I
Sbjct: 70 -AMVSYYASSSEPAQVRGKTVYLQYSNRQEI 99
>gi|297832822|ref|XP_002884293.1| polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]
gi|297330133|gb|EFH60552.1| polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]
Length = 398
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 175/342 (51%), Gaps = 54/342 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A AR++L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFSDVETASAARNALDGRSIPRYLLPEHVGSCNLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
+ +S +L + + + RSRD+TNP LP A
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNH--------------------------TAMD 224
Query: 232 GGLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPD 283
G + P + + L+ N+ + D L +FS YG + +I + +N
Sbjct: 225 GSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGST 283
Query: 284 HALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 284 QALIQYSDIPTAAIAKEALEGHCIYDGGYCKLRLSYSRHTDL 325
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 39/245 (15%)
Query: 15 HEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAI---NALQFYT---NVQP 66
HE+S + + +F FG + K+ A QAL+Q DV +A NAL + + P
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFSDVETASAARNALDGRSIPRYLLP 181
Query: 67 TIRGR-NVYVQFSSHQELTTMEQNAQGRG----------------------------DEP 97
G N+ + +S+H +L Q+ + R +
Sbjct: 182 EHVGSCNLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNHTAMDGSMQPALGADGKKVESQ 241
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
+ +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+A +A+ +
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAIAKEA 301
Query: 158 LQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP-AEQKGRPSQSGYSEAGV 215
L+G IYD G C+L + +S +L V +++SRD+T P+L QKG + G
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLAQKGPGVSASAPPTGW 361
Query: 216 AFPQM 220
PQ+
Sbjct: 362 QNPQV 366
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
>gi|68068337|ref|XP_676078.1| polypyrimidine tract binding protein [Plasmodium berghei strain
ANKA]
gi|56495606|emb|CAH97516.1| polypyrimidine tract binding protein, putative [Plasmodium berghei]
Length = 453
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 197/363 (54%), Gaps = 24/363 (6%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-QKSAGFQALIQY 145
++N + +E ++++LV++ +M YP+ +E+++ +FS G VEKI+T +K++ FQAL+Q
Sbjct: 94 KRNTKYNKNECSKVILVSVVNMQYPVDMELIYYLFSKCGIVEKIITISKKTSIFQALVQL 153
Query: 146 QLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205
+ A A +L RNIYDGC L IQ+S L EL + NN ++ D+T PN QK +
Sbjct: 154 ESIQVAKEAIKTLHNRNIYDGCNTLQIQYSFLKELIIKNNNSQAWDYTTPN---PQKNKN 210
Query: 206 SQSGYSEAGVAFPQMANAAA------IAAAFGGGLPPGITGTNDRCTVLVS-NLNSDRID 258
+ S + GV N + F + T + VL+ N+ D D
Sbjct: 211 NFSFQTSHGVLPTPTRNIKETELYKLLERKF--KIVDFETKNTSKTPVLICYNIPKDYSD 268
Query: 259 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
+KLFNLFS+YG + RIK+LR KPD AL+Q + + LA L+ A + LE++FSK
Sbjct: 269 VNKLFNLFSVYGYVSRIKILREKPDSALIQYSNYLFSSLAQECLQHAKICQNILELHFSK 328
Query: 319 HPNIT-----QGADTH--EYMNSNLNRFN-RNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
+I + D++ ++ +++ R+ + K + C PTK + +S + ++VTEE
Sbjct: 329 IYDIKISYQDKNRDSYKAKFFSNHDQRYGISDQLKYVKGACKPTKTLFISNVSEEVTEEC 388
Query: 371 IVSHLEEHGSIVNTKLFEMN-GKKQ--ALVLFETEEQATEALVCKHASSLGGSIIRISFS 427
I++ ++ I K + GKK A + +E+ AT+AL+ H L +++SF+
Sbjct: 389 IIALFNKYDEINKFKSQPIKEGKKNFTATIEMNSEDTATKALMDLHNFQLKDRCMKVSFT 448
Query: 428 QLQ 430
+ +
Sbjct: 449 KTK 451
>gi|302789199|ref|XP_002976368.1| hypothetical protein SELMODRAFT_104811 [Selaginella moellendorffii]
gi|302811042|ref|XP_002987211.1| hypothetical protein SELMODRAFT_125500 [Selaginella moellendorffii]
gi|300145108|gb|EFJ11787.1| hypothetical protein SELMODRAFT_125500 [Selaginella moellendorffii]
gi|300155998|gb|EFJ22628.1| hypothetical protein SELMODRAFT_104811 [Selaginella moellendorffii]
Length = 440
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 179/336 (53%), Gaps = 41/336 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L + FG + TK + +NQA ++ D+ AI + FY
Sbjct: 16 PSKVLHIRNLPWECTEEELIELCKMFGKVVNTKCNVGTNRNQAFVEFADLNQAIAMVSFY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N++ GD + +LLVTI + ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NSKNTGDVASNVLLVTIEGVEAGDVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A AR +L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKIATFEKTAGFQALVQFSDANTASAARQALDGRSIPRYLLPEHVGSCHLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L V + + RSRD+TNP LP P N I+ +
Sbjct: 192 ISFSAHTDLNVKFQSHRSRDYTNPYLPVA-----------------PSAIN--GISQEYT 232
Query: 232 GGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
G P G + +L S N + D L +F+ +G I +I + +N AL+Q
Sbjct: 233 TG-PDGKRKEPESNVLLASIENMQYSVTIDVLHTVFAAFGPIQKIAIFEKNAGFQALIQY 291
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 292 ADVTTAVAAKEALEGHCIYEGGYCKLHLSYSRHTDL 327
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 54/235 (22%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A A Q + GR++
Sbjct: 128 DVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDANTASAARQ-------ALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQN----------------------------AQGRGD 95
+ FS+H +L Q+ G+
Sbjct: 181 LPEHVGSCHLRISFSAHTDLNVKFQSHRSRDYTNPYLPVAPSAINGISQEYTTGPDGKRK 240
Query: 96 EP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
EP + +LL +I +M Y +T++VLH VF+ G ++KI F+K+AGFQALIQY +AV A
Sbjct: 241 EPESNVLLASIENMQYSVTIDVLHTVFAAFGPIQKIAIFEKNAGFQALIQYADVTTAVAA 300
Query: 155 RSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS 208
+ +L+G IY+ G C+L + +S +L V NN+RSRD+T+ P+ P+ S
Sbjct: 301 KEALEGHCIYEGGYCKLHLSYSRHTDLNVKVNNDRSRDYTSSQSPSVLGKAPATS 355
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++H+ LP + TEEE++ + G +VNTK + QA V F QA
Sbjct: 10 FRYTQPPSKVLHIRNLPWECTEEELIELCKMFGKVVNTKCNVGTNRNQAFVEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSI 432
A+V +ASS + G + + +S Q I
Sbjct: 70 -AMVSFYASSSEPAQVRGKTVYLQYSNRQEI 99
>gi|77745463|gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tuberosum]
Length = 437
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 178/337 (52%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ + S+ +L++L +PFG I TK + +NQA ++ D+ AIN + +Y
Sbjct: 15 PSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAINMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRNEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV+KI TF+K+AGFQALIQ+ +A AR +L GR+I + C L
Sbjct: 131 LVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHVNHCHLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N A+
Sbjct: 191 ISYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAMEGVLQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL ++L + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 PVVGPDGKKKEPESNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 289 YPDVTIAAAAKDALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 53/221 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q DV +A A + + GR++
Sbjct: 127 DVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAARE-------ALDGRSIPKYL 179
Query: 74 ----------YVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
+ +S+H +L T ME Q G+ E
Sbjct: 180 LPEHVNHCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAMEGVLQPVVGPDGKKKE 239
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +L ++ +M Y +TV+VL+ VFS G V+KI F+K+ QALIQY A A+
Sbjct: 240 PESNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAK 299
Query: 156 SSLQGRNIYDG-CCQLDIQFSNLDELQVNYNNERSRDFTNP 195
+L+G IYDG C+L + +S +L V +++SRD+T P
Sbjct: 300 DALEGHCIYDGGYCKLHLSYSRHTDLNVQAYSDKSRDYTVP 340
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY +P+K++HL LP D ++EE+V + G IVNTK + QA V F Q
Sbjct: 7 QQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQ 66
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A +V +ASS + G + I +S I N
Sbjct: 67 AIN-MVSYYASSSEPAQVRGKTVYIQYSNRNEIVNN 101
>gi|326506386|dbj|BAJ86511.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 313
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 177/320 (55%), Gaps = 41/320 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 14 PSKVLHLRNMPWESTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 73
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHML-YPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + ++++V+H
Sbjct: 74 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEGVQPNDVSIDVIH 129
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + C L
Sbjct: 130 LVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLADHVSICHLR 189
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L + + + RSRD+TNP LP P+ + G+ P + + I
Sbjct: 190 ITFSAHKDLNIKFQSHRSRDYTNPYLPV----NPT----AIEGITQPILGSDGMI----- 236
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 237 ---------KEPESNVLLASIENMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQ 287
Query: 289 MGDGFQAELAVHFLKGALLF 308
D A +A L+G ++
Sbjct: 288 YPDITPAGVAKQALEGHCIY 307
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 52/191 (27%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q D P+A+ A + ++ GR++
Sbjct: 126 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEA-------KNSLDGRSIPRYL 178
Query: 74 ----------YVQFSSHQELTTMEQNAQGRG---------------------------DE 96
+ FS+H++L Q+ + R E
Sbjct: 179 LADHVSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGITQPILGSDGMIKE 238
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y + V+VLH VFS G V+KI F+K+ G QALIQY A VA+
Sbjct: 239 PESNVLLASIENMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITPAGVAK 298
Query: 156 SSLQGRNIYDG 166
+L+G IYDG
Sbjct: 299 QALEGHCIYDG 309
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+ + +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWESTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 402 EEQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ QA ++V +ASS + G + I +S Q I N
Sbjct: 63 QNQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 100
>gi|395731919|ref|XP_002812155.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Pongo abelii]
Length = 509
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 201/453 (44%), Gaps = 94/453 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 135
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 136 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 190
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ D L
Sbjct: 191 NPVGKVQRIVIFKRN-GIQAMV----------------------------------DRLN 215
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 216 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 275
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 276 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 328
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 329 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 388
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 389 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 448
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 449 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 481
>gi|296224059|ref|XP_002757888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Callithrix jacchus]
Length = 509
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 201/453 (44%), Gaps = 94/453 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 135
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 136 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 190
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ D L
Sbjct: 191 NPVGKVQRIVIFKRN-GIQAMV----------------------------------DRLN 215
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 216 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 275
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 276 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 328
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 329 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 388
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 389 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 448
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 449 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 481
>gi|389584747|dbj|GAB67479.1| polypyrimidine tract binding protein [Plasmodium cynomolgi strain
B]
Length = 746
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 185/360 (51%), Gaps = 34/360 (9%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA-GFQALIQYQLRPSAVV 153
+E +R++LV++ ++ YP+ +E+++ +FS G VEKI+TF ++ +QAL+Q+ +A
Sbjct: 396 NESSRVILVSVLNLHYPVDIELIYYLFSKCGTVEKIITFSRNPLIYQALVQFPNIETAQE 455
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK----------- 202
A +L RNIYDGC + IQ+S L EL V NN SRD+T N+ +
Sbjct: 456 AIKTLHNRNIYDGCNTIQIQYSFLKELVVKANNSSSRDYTAANMTKNKNLLNFQTSHGVL 515
Query: 203 GRPSQSGY-SEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
P++ G SE + + A P ++ N+ D D K
Sbjct: 516 PTPTRKGNDSELYLMLERKFKLVDFDAKNTSKTP----------VLICYNIPKDYTDVHK 565
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LFNLFS+YG + RIK+LR KPD AL+Q A +A L+ A + + LE++FSK +
Sbjct: 566 LFNLFSVYGFVSRIKILREKPDSALIQYAGYLFASVAQECLQHAKVGDQVLELHFSKILD 625
Query: 322 IT---QGADTHEYMNSNLNRFNR-----NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
I Q Y + +++ + AK + C PTK + +S + ++VTEE I++
Sbjct: 626 IRIAPQQKKIESYKAKTFSSYDQRYLLSDQAKYIKGACKPTKTLFISNVSEEVTEECIMN 685
Query: 374 HLEEHGSIVNTKLFEMN-GKKQALVLFE--TEEQATEALVCKHASSLGGSIIRISFSQLQ 430
++G I K+ + GKK + E +E+ AT AL+ H L I++S+++ +
Sbjct: 686 LFIKYGEIKKIKIQPVKEGKKHITITVELSSEDMATRALMDLHNFYLKDRFIKVSYTKTR 745
>gi|403269680|ref|XP_003926844.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Saimiri
boliviensis boliviensis]
gi|33518884|gb|AAQ20083.1| stromal RNA regulating factor [Homo sapiens]
Length = 508
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 201/453 (44%), Gaps = 94/453 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ D L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMV----------------------------------DRLN 214
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 215 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 274
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 275 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 327
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 328 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 387
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 388 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 447
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 448 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 480
>gi|410955436|ref|XP_003984359.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Felis catus]
Length = 510
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 201/453 (44%), Gaps = 94/453 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 77 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 136
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 137 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 191
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ D L
Sbjct: 192 NPVGKVQRIVIFKRN-GIQAMV----------------------------------DRLN 216
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 217 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 276
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 277 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 329
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 330 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 389
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 390 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 449
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 450 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 482
>gi|414867006|tpg|DAA45563.1| TPA: hypothetical protein ZEAMMB73_334584 [Zea mays]
Length = 504
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 184/343 (53%), Gaps = 56/343 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ DV AI+ + ++
Sbjct: 17 PSKVLHLRNLPWECAEEELVELCKPFGRIINTKSGVGANRNQAFVEFTDVNQAISMVSYF 76
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 77 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQASDVTIDVIH 132
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS G+V KI TF+K+AGFQALIQY +A AR +L GR+I CC L
Sbjct: 133 MVFSAFGYVHKIATFEKAAGFQALIQYTDADTASAAREALDGRSIPSYLLPEHVTSCC-L 191
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+ NP LP YS A
Sbjct: 192 RISFSAHKDLNIKFQSNRSRDYNNPYLPIN---------YS-----------------AM 225
Query: 231 GGGLPPGITGTNDR-----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKP 282
G L P + G++ R VL++++ + + + D L +FS +G + +I + +N
Sbjct: 226 DGTLQPAV-GSDGRKVEAQGNVLLASIENMQYAVSVDVLHTVFSSFGTVQKIAIFEKNGG 284
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 285 TQALIQYPDVNTAAVAKEALEGHCIYDGGYCKLHLSYSRHTDL 327
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 52/216 (24%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D +A A + + GR++
Sbjct: 134 VFSAFGYVHKIATFEKAAGFQALIQYTDADTASAARE-------ALDGRSIPSYLLPEHV 186
Query: 74 -----YVQFSSHQELTTMEQNAQGR----------------------GDEPNRI------ 100
+ FS+H++L Q+ + R G + ++
Sbjct: 187 TSCCLRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGSDGRKVEAQGNV 246
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y ++V+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L+G
Sbjct: 247 LLASIENMQYAVSVDVLHTVFSSFGTVQKIAIFEKNGGTQALIQYPDVNTAAVAKEALEG 306
Query: 161 RNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
IYDG C+L + +S +L V + ++SRD+T P
Sbjct: 307 HCIYDGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIP 342
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V + G I+NTK + QA V F QA
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIINTKSGVGANRNQAFVEFTDVNQAI 70
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 71 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 103
>gi|397493591|ref|XP_003817687.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Pan paniscus]
Length = 505
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 201/453 (44%), Gaps = 94/453 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 72 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 131
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 132 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 186
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ D L
Sbjct: 187 NPVGKVQRIVIFKRN-GIQAMV----------------------------------DRLN 211
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 212 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 271
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 272 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 324
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 325 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 384
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 385 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 444
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 445 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 477
>gi|81076794|gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanum tuberosum]
Length = 442
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 178/337 (52%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ + S+ +L++L +PFG I TK + +NQA ++ D+ AIN + +Y
Sbjct: 15 PSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAINMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRNEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV+KI TF+K+AGFQALIQ+ +A AR +L GR+I + C L
Sbjct: 131 LVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHVNHCHLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N A+
Sbjct: 191 ISYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAMEGVLQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL ++L + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 PVVGPDGKKKEPESNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 289 YPDVTIAAAAKDALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 53/221 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q DV +A A + + GR++
Sbjct: 127 DVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAARE-------ALDGRSIPKYL 179
Query: 74 ----------YVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
+ +S+H +L T ME Q G+ E
Sbjct: 180 LPEHVNHCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAMEGVLQPVVGPDGKKKE 239
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +L ++ +M Y +TV+VL+ VFS G V+KI F+K+ QALIQY A A+
Sbjct: 240 PESNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAK 299
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
+L+G IYDG C+L + +S +L V +++SRD+T P
Sbjct: 300 DALEGHCIYDGGYCKLHLSYSRHTDLNVQAYSDKSRDYTVP 340
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY +P+K++HL LP D ++EE+V + G IVNTK + QA V F Q
Sbjct: 7 QQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQ 66
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A +V +ASS + G + I +S I N
Sbjct: 67 AIN-MVSYYASSSEPAQVRGKTVYIQYSNRNEIVNN 101
>gi|413933765|gb|AFW68316.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
gi|413945517|gb|AFW78166.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 128
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M+EPSKVIH+RNVGHEI+E+DLLQL QPFGV++K+VMLRAKNQ LLQM+D+ ++++ALQ+
Sbjct: 1 MSEPSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQTLLQMEDIHASVSALQY 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE 96
YT+VQP+IRGRNVY+QFSSHQELTT +Q++ GR +
Sbjct: 61 YTSVQPSIRGRNVYMQFSSHQELTT-DQSSHGRNSD 95
>gi|334702291|gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum tuberosum]
Length = 467
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 178/337 (52%), Gaps = 44/337 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ + S+ +L++L +PFG I TK + +NQA ++ D+ AIN + +Y
Sbjct: 15 PSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAINMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRNEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV+KI TF+K+AGFQALIQ+ +A AR +L GR+I + C L
Sbjct: 131 LVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLPEHVNHCHLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N A+
Sbjct: 191 ISYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAMEGVLQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL ++L + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 PVVGPDGKKKEPESNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 289 YPDVTIAAAAKDALEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 53/221 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D++ L F FG + K+ A QAL+Q DV +A A + + GR++
Sbjct: 127 DVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAARE-------ALDGRSIPKYL 179
Query: 74 ----------YVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
+ +S+H +L T ME Q G+ E
Sbjct: 180 LPEHVNHCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAMEGVLQPVVGPDGKKKE 239
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +L ++ +M Y +TV+VL+ VFS G V+KI F+K+ QALIQY A A+
Sbjct: 240 PESNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAK 299
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
+L+G IYDG C+L + +S +L V +++SRD+T P
Sbjct: 300 DALEGHCIYDGGYCKLHLSYSRHTDLNVQAYSDKSRDYTVP 340
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY +P+K++HL LP D ++EE+V + G IVNTK + QA V F Q
Sbjct: 7 QQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQ 66
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A +V +ASS + G + I +S I N
Sbjct: 67 AIN-MVSYYASSSEPAQVRGKTVYIQYSNRNEIVNN 101
>gi|224141415|ref|XP_002324068.1| predicted protein [Populus trichocarpa]
gi|222867070|gb|EEF04201.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 178/341 (52%), Gaps = 48/341 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ + AI + +Y
Sbjct: 15 PSKVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVEFAEQNQAIQMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDNPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-----------YDGC 167
VFS G+V KI TF+K+AGFQALIQ+ +A AR++L GRNI + G
Sbjct: 131 LVFSAFGYVHKIATFEKAAGFQALIQFTDAETASSARNALDGRNIMFKKFRYLLPEHVGS 190
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIA 227
C L I +S +L + + + RSRD+TNP LP N AI
Sbjct: 191 CNLRISYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAID 228
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDH 284
+ VL++++ + + + D L +FS +G + +I + +N
Sbjct: 229 GPVQSTVGADGKKKEPESNVLLASIENMQYAVTVDVLHTVFSGFGTVQKIAIFEKNGGTQ 288
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 289 ALIQYPDVATAAVAKETLEGHCIYDGGYCKLHLSYSRHTDL 329
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 129/272 (47%), Gaps = 51/272 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDV---PSAINAL--------QFYTNVQP 66
D++ L F FG + K+ A QAL+Q D SA NAL +F +
Sbjct: 127 DVIHLVFSAFGYVHKIATFEKAAGFQALIQFTDAETASSARNALDGRNIMFKKFRYLLPE 186
Query: 67 TIRGRNVYVQFSSHQELTTMEQN---------------------------AQGRGDEP-N 98
+ N+ + +S+H +L Q+ A G+ EP +
Sbjct: 187 HVGSCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIDGPVQSTVGADGKKKEPES 246
Query: 99 RILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158
+LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L
Sbjct: 247 NVLLASIENMQYAVTVDVLHTVFSGFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKETL 306
Query: 159 QGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN---LPAEQKG---RPSQSGYS 211
+G IYDG C+L + +S +L V +++SRD+T P+ L A+ G P+
Sbjct: 307 EGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTIPDASFLTAQAPGLHTAPTTWQNP 366
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGITGTND 243
+AG + + + A AA +PPG D
Sbjct: 367 QAGSMY--LGSNYATTAAAPAQVPPGQVAAWD 396
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + TEEE++ E G IVNTK N + QA V F + QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVEFAEQNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ +V +ASS + G + I +S I N
Sbjct: 69 Q-MVSYYASSSEPAQVRGKTVYIQYSNRHEIVNN 101
>gi|118488224|gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 181/341 (53%), Gaps = 52/341 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ D AI + +Y
Sbjct: 15 PSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVEFVDQNQAIQMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSDPAQVRGKTVYIQYSNRHEIV----NNKSPGDNPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS G++ KI TF+K+AGFQALIQ+ +A AR++L GR+I + G C L
Sbjct: 131 LVFSAFGYLHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYLLPEHVGSCHLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N AI
Sbjct: 191 ISYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAIE---- 224
Query: 232 GGLPPGITGTNDR----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDH 284
G + P + + VL++++ + + + D L +FS +G + +I + +N
Sbjct: 225 GPVQPTVGADGKKKEPESNVLLASIENMQYAVTIDVLHTVFSAFGTVQKIAIFEKNGGTQ 284
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 285 ALIQYPDVATAAVAKETLEGHCIYDGGYCKLHLSYSRHTDL 325
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 10/156 (6%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A G+ EP + +LL +I +M Y +T++VLH VFS G V+KI F+K+ G QALIQY
Sbjct: 233 ADGKKKEPESNVLLASIENMQYAVTIDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDV 292
Query: 149 PSAVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN---LPAEQKG- 203
+A VA+ +L+G IYDG C+L + +S +L V +++SRD+T P+ + A+ G
Sbjct: 293 ATAAVAKETLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDASLIAAQAPGL 352
Query: 204 --RPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPG 237
P+ +AG + N A AA +PPG
Sbjct: 353 HTAPTMWQNPQAGSMY--TGNNYATTAAVPVQVPPG 386
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + TEEE++ + G IVNTK + QA V F + QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVEFVDQNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ +V +ASS + G + I +S I N
Sbjct: 69 Q-MVSYYASSSDPAQVRGKTVYIQYSNRHEIVNN 101
>gi|238013298|gb|ACR37684.1| unknown [Zea mays]
gi|414867005|tpg|DAA45562.1| TPA: hypothetical protein ZEAMMB73_334584 [Zea mays]
Length = 317
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 174/326 (53%), Gaps = 53/326 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ DV AI+ + ++
Sbjct: 17 PSKVLHLRNLPWECAEEELVELCKPFGRIINTKSGVGANRNQAFVEFTDVNQAISMVSYF 76
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 77 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQASDVTIDVIH 132
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS G+V KI TF+K+AGFQALIQY +A AR +L GR+I CC L
Sbjct: 133 MVFSAFGYVHKIATFEKAAGFQALIQYTDADTASAAREALDGRSIPSYLLPEHVTSCC-L 191
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+ NP LP YS A
Sbjct: 192 RISFSAHKDLNIKFQSNRSRDYNNPYLPIN---------YS-----------------AM 225
Query: 231 GGGLPPGITGTNDR-----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKP 282
G L P + G++ R VL++++ + + + D L +FS +G + +I + +N
Sbjct: 226 DGTLQPAV-GSDGRKVEAQGNVLLASIENMQYAVSVDVLHTVFSSFGTVQKIAIFEKNGG 284
Query: 283 DHALVQMGDGFQAELAVHFLKGALLF 308
AL+Q D A +A L+G ++
Sbjct: 285 TQALIQYPDVNTAAVAKEALEGHCIY 310
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 51/186 (27%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D +A A + + GR++
Sbjct: 134 VFSAFGYVHKIATFEKAAGFQALIQYTDADTASAARE-------ALDGRSIPSYLLPEHV 186
Query: 74 -----YVQFSSHQELTTMEQNAQGR----------------------GDEPNRI------ 100
+ FS+H++L Q+ + R G + ++
Sbjct: 187 TSCCLRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGSDGRKVEAQGNV 246
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y ++V+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L+G
Sbjct: 247 LLASIENMQYAVSVDVLHTVFSSFGTVQKIAIFEKNGGTQALIQYPDVNTAAVAKEALEG 306
Query: 161 RNIYDG 166
IYDG
Sbjct: 307 HCIYDG 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V + G I+NTK + QA V F QA
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIINTKSGVGANRNQAFVEFTDVNQAI 70
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 71 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 103
>gi|223972751|gb|ACN30563.1| unknown [Zea mays]
gi|223973771|gb|ACN31073.1| unknown [Zea mays]
Length = 487
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 56/343 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + NQA ++ DV AI+ + ++
Sbjct: 17 PSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAISMVSYF 76
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP-ITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 77 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQSSDVTIDVIH 132
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS G+V KI TF+K+AGFQALIQY +A A+ SL GR+I CC L
Sbjct: 133 MVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKESLDGRSIPSYLLPEHVTSCC-L 191
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+ NP LP YS A
Sbjct: 192 RISFSAHKDLNIKFQSNRSRDYNNPYLPIN---------YS-----------------AM 225
Query: 231 GGGLPPGITGTNDR-----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKP 282
G L P + G + R VL++++ + + + D L +FS +G++ +I + +N
Sbjct: 226 DGTLQPAV-GADGRQVEAQGNVLLASIENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGG 284
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 285 TQALIQYPDVSTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDL 327
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 52/216 (24%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D +A A + ++ GR++
Sbjct: 134 VFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKE-------SLDGRSIPSYLLPEHV 186
Query: 74 -----YVQFSSHQELTTMEQN---------------------------AQGRGDEP-NRI 100
+ FS+H++L Q+ A GR E +
Sbjct: 187 TSCCLRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGADGRQVEAQGNV 246
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ SL+G
Sbjct: 247 LLASIENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGGTQALIQYPDVSTAAVAKESLEG 306
Query: 161 RNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
IYDG C+L + +S +L V + ++SRD+T P
Sbjct: 307 HCIYDGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIP 342
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V + G IVNTK QA V F QA
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAI 70
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 71 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 103
>gi|226495275|ref|NP_001151769.1| polypyrimidine tract-binding protein [Zea mays]
gi|195649587|gb|ACG44261.1| polypyrimidine tract-binding protein [Zea mays]
Length = 487
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 56/343 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + NQA ++ DV AI+ + ++
Sbjct: 17 PSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAISMVSYF 76
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP-ITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 77 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQSSDVTIDVIH 132
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS G+V KI TF+K+AGFQALIQY +A A+ SL GR+I CC L
Sbjct: 133 MVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKESLDGRSIPSYLLPEHVTSCC-L 191
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+ NP LP YS A
Sbjct: 192 RISFSAHKDLNIKFQSNRSRDYNNPYLPIN---------YS-----------------AM 225
Query: 231 GGGLPPGITGTNDR-----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKP 282
G L P + G + R VL++++ + + + D L +FS +G++ +I + +N
Sbjct: 226 DGTLQPAV-GADGRQVEAQGNVLLASIENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGG 284
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 285 TQALIQYPDVSTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDL 327
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 52/216 (24%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D +A A + ++ GR++
Sbjct: 134 VFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKE-------SLDGRSIPSYLLPEHV 186
Query: 74 -----YVQFSSHQELTTMEQN---------------------------AQGRGDEP-NRI 100
+ FS+H++L Q+ A GR E +
Sbjct: 187 TSCCLRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGADGRQVEAQGNV 246
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ SL+G
Sbjct: 247 LLASIENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGGTQALIQYPDVSTAAVAKESLEG 306
Query: 161 RNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
IYDG C+L + +S +L V + ++SRD+T P
Sbjct: 307 HCIYDGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIP 342
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V + G IVNTK QA V F QA
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAI 70
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 71 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 103
>gi|109102687|ref|XP_001109883.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Macaca mulatta]
Length = 508
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/453 (27%), Positives = 201/453 (44%), Gaps = 94/453 (20%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ D L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMV----------------------------------DRLN 214
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 215 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 274
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 275 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 327
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL + SK ++
Sbjct: 328 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLIFSVSKQHSVVPSQIFELE 387
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 388 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 447
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 448 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 480
>gi|302143674|emb|CBI22535.3| unnamed protein product [Vitis vinifera]
Length = 1311
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 181/338 (53%), Gaps = 44/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTSADVAGNVLLVTIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L V + + RSRD+TNP LP VA + + + F
Sbjct: 192 ITFSAHTDLSVKFQSHRSRDYTNPYLP----------------VASSAIDGSGQFSMGFD 235
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
G VL++++ + + + D L +FS +G I +I + +N AL+Q
Sbjct: 236 G------RKVEPESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L +++S+H +++
Sbjct: 290 YPDVQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 39/219 (17%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQD---VPSAINALQFYT---NVQPTIRGR 71
D+L L F FG + K+ A QAL+Q D +A NAL + + P G
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGP 187
Query: 72 -NVYVQFSSHQELTTMEQNAQ---------------------------GRGDEP-NRILL 102
+ + FS+H +L+ Q+ + GR EP + +LL
Sbjct: 188 CTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVEPESNVLL 247
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VFS G ++KI F K+ G QALIQY +A+VA+ +L+G
Sbjct: 248 ASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAKEALEGHC 307
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE 200
IYDG C+L I +S +L + NN+RSRD+T+P L ++
Sbjct: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSPVLSSQ 346
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|356509289|ref|XP_003523383.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 433
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 182/340 (53%), Gaps = 48/340 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D P +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTAADVPGNVLLVTIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+ +L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP + G +A V
Sbjct: 192 ITYSGHSDLSVKFQSHRSRDYTNPYLPVAPS---AVEGSGQAMV---------------- 232
Query: 232 GGLPPGITGT--NDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G+ G VL++++ + + + D L +FS +G + +I + +N AL
Sbjct: 233 -----GLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
Query: 287 VQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 IQFPDTQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 53/225 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A T+ + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETA-------TSAKDALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQNAQGRG----------------------------D 95
+ +S H +L+ Q+ + R +
Sbjct: 181 LPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLE 240
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +LL +I +M Y +T++VLH VFS G V+KI F K+ G QALIQ+ +AVVA+
Sbjct: 241 AESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQFPDTQTAVVAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
+L+G IYDG C+L I +S +L + NN+RSRD+T PN PA
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPA 345
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|340375987|ref|XP_003386515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Amphimedon queenslandica]
Length = 449
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 33/350 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H R V + L+ + FG I + M+ Q+L++ + + AI +
Sbjct: 46 PSRVVHARAVPDGCTHTLLVNVLSQFGKIGYVTMMPKLRQSLVEFEKIEDAIACVTHCQQ 105
Query: 64 VQPTIRGRNVYVQFSSHQELT-----TMEQNAQGRGDEP--NRILLVTIHHMLYPITVEV 116
Q I R VY +S+ E+T + N +EP N ILL TI + LYPITV+V
Sbjct: 106 HQIFIMDRQVYFNYSTSSEITRSPYGVVPNNTAPDPNEPPENHILLFTIFNPLYPITVDV 165
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
+ + +P+GFV++IV F+K+ G Q L+++ SA A+ L G +IY GCC L I+F+
Sbjct: 166 IRTICTPYGFVQRIVIFRKN-GLQVLVEFDSNHSAQRAKQQLDGADIYAGCCTLKIEFAR 224
Query: 177 LDELQVNYNNERSRDFTN---------PNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIA 227
++L V N++ + D+T P +P Q+ + +S + A PQ N +
Sbjct: 225 TNKLNVFKNDDMTCDYTVQGQRLQSNFPRVPPMQQQQQQMRPFSTSPYA-PQPTN----S 279
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
A F G +G+ L N N D + FNL YGN++++KLL NKP A+V
Sbjct: 280 APFVGTQAVAGSGSVIMLYGLDRNFNCDHV-----FNLLCSYGNVLKVKLLVNKPGTAMV 334
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNF------SKHPNITQGADTHEY 331
M A A+ +L G + + LE+ F SK+ + GA H Y
Sbjct: 335 HMDSPQGARNAIQYLHGQKIMKQTLELKFLTAEGTSKNRIVGPGAIMHFY 384
>gi|355694958|gb|AER99845.1| heteroproteinous nuclear ribonucleoprotein L-like protein [Mustela
putorius furo]
Length = 380
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 172/356 (48%), Gaps = 52/356 (14%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ A A+++
Sbjct: 5 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 63
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ---------- 207
L G +IY GCC L I+++ L V N+ S D+T P L +G+ Q
Sbjct: 64 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPS 123
Query: 208 ----SGYSEAGVAFP-----QMAN-----------AAAIAAAFGGGLPPGITGTNDRCTV 247
GY G P +M + A ++ GG P G V
Sbjct: 124 SFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG-------SVV 176
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 307
+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD + E AV L L
Sbjct: 177 MVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 236
Query: 308 FGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
FGKRL V SK ++ G ++ ++ S NRF + P+ ++H
Sbjct: 237 FGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLH 296
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEAL 409
+P VTEE +H + K + K A L+ +E + A EAL
Sbjct: 297 YYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 352
>gi|413922344|gb|AFW62276.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 458
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 180/337 (53%), Gaps = 48/337 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVI 129
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQL 170
H VFS GFV KI TF+K+AGF QY P+A+ A++SL GR+I + C +
Sbjct: 130 HLVFSAFGFVHKIATFEKAAGF----QYTDAPTALEAKNSLDGRSIPKYLLPEHISACHM 185
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP Q + G+ P +
Sbjct: 186 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG--------- 228
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
P G + +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 229 ----PDGKIKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQ 284
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A +A L+G ++ +L +++S+H ++
Sbjct: 285 YPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 321
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 58/262 (22%)
Query: 25 LFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV----------- 73
+F FG + K+ + A Q D P+A+ A ++ GR++
Sbjct: 132 VFSAFGFVHKIATF--EKAAGFQYTDAPTALEAKN-------SLDGRSIPKYLLPEHISA 182
Query: 74 ---YVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRILL 102
+ FS+H++L T +E Q G+ EP + +LL
Sbjct: 183 CHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKIKEPESNVLL 242
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +A VA+ +L+G
Sbjct: 243 ASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEGHC 302
Query: 163 IYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMA 221
IYD G C+L + +S +L V +++RSRD+T + A+ + S GVA+ A
Sbjct: 303 IYDGGYCKLHLSYSRHTDLNVKAHDDRSRDYTLSDPNAQLQAAAQAPVISSPGVAWQNPA 362
Query: 222 NAAA------IAAAFGGGLPPG 237
+A A AA+ G PP
Sbjct: 363 SAPAAPFYGSTAASTPVGQPPA 384
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|356516021|ref|XP_003526695.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 432
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 182/340 (53%), Gaps = 48/340 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D P +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVPGNVLLVTIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+ +L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHVGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP + G +A V
Sbjct: 192 ITYSGHSDLSVKFQSHRSRDYTNPYLPVAPS---AVEGSGQAMV---------------- 232
Query: 232 GGLPPGITGT--NDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G+ G VL++++ + + + D L +FS +G + +I + +N AL
Sbjct: 233 -----GLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
Query: 287 VQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 IQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLS 327
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 120/257 (46%), Gaps = 40/257 (15%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQ-----------FYTNVQP 66
D+L L F FG + K+ A QAL+Q D +A +A +V P
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHVGP 187
Query: 67 -TIR-----GRNVYVQFSSHQE-------LTTMEQNAQGRG-----------DEPNRILL 102
T+R ++ V+F SH+ L +G G + + +LL
Sbjct: 188 CTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLETESNVLL 247
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+ +L+G
Sbjct: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHC 307
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMA 221
IYDG C+L + +S +L + NN+RSRD+T PN P +PS G + P
Sbjct: 308 IYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPNTPIV-NAQPSIFGQQSVSMMGPSQQ 366
Query: 222 NAAAIAAAFGGGLPPGI 238
A +G P +
Sbjct: 367 PFYGSQAGWGTAPPAAV 383
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|356568680|ref|XP_003552538.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 304
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 41/300 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RSRD+TNP LP N AI A
Sbjct: 191 ISYSAHKDLNIKFQSNRSRDYTNPMLP----------------------VNYTAIEGAVQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 TAVGPDGKRKEPDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 52/170 (30%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGR------ 71
D++ L F FG + K+ A QAL+Q D +A +A + + GR
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSA-------RDALDGRSIPRYL 179
Query: 72 --------NVYVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
N+ + +S+H++L T +E Q G+ E
Sbjct: 180 LPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKE 239
Query: 97 PNR-ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
P+ +LL +I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY
Sbjct: 240 PDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQY 289
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|363807178|ref|NP_001242348.1| uncharacterized protein LOC100810102 [Glycine max]
gi|255645249|gb|ACU23122.1| unknown [Glycine max]
Length = 428
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 181/341 (53%), Gaps = 50/341 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S QE+ N + D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSDRQEIV----NNKTAADVAGNVLLVTIEGEDARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+ +L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCSLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP Q +A G
Sbjct: 192 ITYSGHSDLSVKFQSHRSRDYTNPYLPVAQ-------------------------SAMEG 226
Query: 232 GGLP-PGITGT--NDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHA 285
G P G+ G VL++++ + + + D L +FS +G + +I + +N A
Sbjct: 227 SGQPMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
Query: 286 LVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
L+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 287 LIQYPDIQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLS 327
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 39/217 (17%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINA--------LQFY-------- 61
D+L L F FG + K+ A QAL+Q D +A +A + Y
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGP 187
Query: 62 TNVQPTIRGR-NVYVQFSSHQE-------LTTMEQNAQGRG-----------DEPNRILL 102
+++ T G ++ V+F SH+ L + +G G + + +LL
Sbjct: 188 CSLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLEAESNVLL 247
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+ +L+G
Sbjct: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHC 307
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
IYDG C+L I +S +L + NN+RSRD+T PN+P
Sbjct: 308 IYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNVP 344
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY P+K++HL LP + TEEE++ + G +VNTK + QA + F Q
Sbjct: 8 QQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQ 67
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A A++ +ASS + G + + +S Q I N
Sbjct: 68 AI-AMISYYASSSEPAQVRGKTVYLQYSDRQEIVNN 102
>gi|156100793|ref|XP_001616090.1| polypyrimidine tract binding protein [Plasmodium vivax Sal-1]
gi|148804964|gb|EDL46363.1| polypyrimidine tract binding protein, putative [Plasmodium vivax]
Length = 747
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 182/360 (50%), Gaps = 34/360 (9%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG-FQALIQYQLRPSAVV 153
+E +R++LV++ ++ YP+ +E+++ +FS G VEKI+TF ++ +QAL+Q+Q +A
Sbjct: 397 NESSRVILVSVLNLHYPVDIELIYYLFSKCGTVEKIITFSRNPLIYQALVQFQNIETAQE 456
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK----------- 202
A +L RNIYDGC + IQ+S L EL V NN SRD+T NL +
Sbjct: 457 AIKTLHNRNIYDGCNTIQIQYSFLKELVVKANNSSSRDYTATNLGKNKNLLNFQTSHGVL 516
Query: 203 GRPSQSGY-SEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
P++ G SE + + A P ++ N+ D D K
Sbjct: 517 PTPTRKGNDSELYLMLERKFKLVDFDAKNTSKTP----------VLICYNIPKDYTDVHK 566
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LFNLFS+YG + RIK+LR KPD AL+Q A +A L+ A + + LE++FSK +
Sbjct: 567 LFNLFSVYGFVSRIKILREKPDSALIQYAGYLFASVAQECLQHAKVGDQVLELHFSKILD 626
Query: 322 I---TQGADTHEYMNSNLNRFNR-----NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
I Q Y + +++ + AK + C PTK + +S + ++VTEE +++
Sbjct: 627 IRIAPQQKKIESYKAKTFSSYDQRYLLADQAKYIKGACKPTKTLFISNVSEEVTEECMMN 686
Query: 374 HLEEHGS-IVNTKLFEMNGKKQALVLFE--TEEQATEALVCKHASSLGGSIIRISFSQLQ 430
++G GKK + E +E+ AT AL+ H L I++S+++ +
Sbjct: 687 LFMKYGEIKKIKIQPIKEGKKHITITVELSSEDTATRALMDLHNFYLKDRFIKVSYTKTR 746
>gi|431912753|gb|ELK14771.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Pteropus
alecto]
Length = 484
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 199/430 (46%), Gaps = 74/430 (17%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+ P+ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAM------PT----------------------------RLN 214
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----PSQSGYSEAGVAFPQMAN---AAAIAAAFGGG 233
V N+ S D+T P L ++G P S Y P++ A ++ GG
Sbjct: 215 VIRNDNDSWDYTKPYL--GRRGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGG 272
Query: 234 LPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
P G V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD +
Sbjct: 273 NPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEY 325
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAA 344
E AV L LFGKRL V SK ++ G ++ ++ S NRF
Sbjct: 326 AVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQ 385
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLF 399
+ P+ ++H +P VTEE +H + K + K A L+ +
Sbjct: 386 ASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEW 445
Query: 400 ETEEQATEAL 409
E + A EAL
Sbjct: 446 ECKTDAVEAL 455
>gi|321459460|gb|EFX70513.1| hypothetical protein DAPPUDRAFT_328086 [Daphnia pulex]
Length = 439
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 185/410 (45%), Gaps = 83/410 (20%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N ILL TI + +YPITV+VLH + G V +IV F+K G QA++++ A A+
Sbjct: 16 NHILLFTIVNPVYPITVDVLHTITQAFGEVLRIVIFKKH-GVQAMVEFANVDMARAAKEG 74
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE-QKGRPSQ--------- 207
L G +IY GCC L I+++ L V+ N+ + D+T P A+ Q+ RP+
Sbjct: 75 LDGADIYSGCCTLKIEYAKPTRLNVHKNDSETWDYTTPTPGADSQRQRPAPLLPEPAGGP 134
Query: 208 ---SGYSEAGVAFPQMANAAAI----------------------------AAAFGGGLPP 236
G E G + N + + + GGG P
Sbjct: 135 QGFRGSPEYGRTVERHENGFGVRQGRDGATPRFDYEESAGGAGGRFGGEPSRSIGGGRAP 194
Query: 237 G-----------------------ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
G G + ++V LN ++++ D+LFNL LYGN+
Sbjct: 195 GQRFGGQSGGPPVQSRGSRGVVDATDGPQEGAVLMVYGLNMEKMNADRLFNLLCLYGNVF 254
Query: 274 RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP---------NITQ 324
+IK L+ K A+VQMGD + A+ +L G F ++ VN+SK ++
Sbjct: 255 KIKFLKTKEGSAMVQMGDAPSVDRAIFYLNGLDFFNTKMNVNYSKQAFLADVSMPYDLPD 314
Query: 325 GADTHE-YMNSNLNRF-NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G + + Y+NS NRF N + A R P K++H P +TEE++ EE+G+
Sbjct: 315 GTPSFKSYVNSKNNRFLNSDMASKNR-LQPPCKVLHFYNTPPGLTEEDLRKVFEENGTAF 373
Query: 383 NTKLFEMNGKKQ----ALVLFETEEQATEALV-CKHASSLGGSIIRISFS 427
++ + K + + F T ++A EALV C H L G+ ++ ++
Sbjct: 374 PAEVRLLQNKSEKSSSGHLEFSTLQEAVEALVICNHI-PLSGANVKWPYT 422
>gi|359490453|ref|XP_003634092.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Vitis vinifera]
Length = 446
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 183/338 (54%), Gaps = 44/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + +A G+ +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGN----VLLVTIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L V + + RSRD+TNP LP VA + + + F
Sbjct: 192 ITFSAHTDLSVKFQSHRSRDYTNPYLP----------------VASSAIDGSGQFSMGFD 235
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
G VL++++ + + + D L +FS +G I +I + +N AL+Q
Sbjct: 236 G------RKVEPESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L +++S+H +++
Sbjct: 290 YPDVQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
GR EP + +LL +I +M Y +T++VLH VFS G ++KI F K+ G QALIQY +
Sbjct: 236 GRKVEPESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQT 295
Query: 151 AVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNL 197
A+VA+ +L+G IYDG C+L I +S +L + NN+RSRD+T+P L
Sbjct: 296 AIVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSPVL 343
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|71983992|ref|NP_495411.2| Protein C44B7.2, isoform a [Caenorhabditis elegans]
gi|351065573|emb|CCD61555.1| Protein C44B7.2, isoform a [Caenorhabditis elegans]
Length = 597
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 117/465 (25%), Positives = 207/465 (44%), Gaps = 65/465 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG + + AL++ +D+ A + F T+
Sbjct: 30 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFATS 89
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G+ +S+ Q + M + PN++L+VT+ + YPI +V++Q+ +
Sbjct: 90 NQINVGGQGALFNYSTSQCIERMGFESA----TPNKVLVVTVLNAQYPIDADVIYQISNA 145
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 146 QGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAKPDRVRVQ 205
Query: 184 YNNERSRDFTNPN---------------LPAEQKGRPSQSGYS-------EAGVAFPQMA 221
++ RDFT P+ P + RP + + +A ++ +
Sbjct: 206 RQDKDQRDFTLPDNESFQDTGRKTLIPAKPDDHYRRPYEDDRNHYDRHDYQAPSSYGYSS 265
Query: 222 NAAAIAAAFGG--GLPPG-----------------ITGTNDRCTVLVSNLNSDRIDEDKL 262
+ +GG G PP G C +++ L +I+ D L
Sbjct: 266 RGGGHSDYYGGDRGGPPHPPPSRYRDDYEDRGYAQPAGGGPGCVMMIYGLEHGKINCDML 325
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
FN+ YGN++RI +R K + ++++G + + + FL+G+ LFG LE S +
Sbjct: 326 FNILCQYGNVLRISFMRTKTETGIIELGTPEERQNVLDFLQGSALFGLTLEFKPSHQECV 385
Query: 323 TQGADT----------HEYMNSNLNRFNRN--AAKNYRYCCSPTKMIHLSTLPQDVTEE- 369
D +Y +S RF+ AAKN PT +H P + E+
Sbjct: 386 HHLRDPFLLPDGSPSFKDYSSSRNQRFSTPELAAKN--RIIFPTNTLHWFNAPGTMDEQA 443
Query: 370 --EIVSHLEEHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
++++ EH V +F ++ A FET E A E L
Sbjct: 444 LLDLMAEKTEH-KPVKIDIFPSRNERSAAGTAEFETVEIANEVLA 487
>gi|255545042|ref|XP_002513582.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223547490|gb|EEF48985.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 447
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 185/341 (54%), Gaps = 50/341 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFMDLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + A G+ +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN----VLLVTIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GRNI + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPRYLLPEHIGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNPNLP A +A G
Sbjct: 192 ITYSAHTDLSVKFQSHRSRDYTNPNLP-------------------------VAPSAIDG 226
Query: 232 GGL-PPGITGTN--DRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHA 285
G+ G+ G VL++++ + + + D L +FS +G + +I + +N A
Sbjct: 227 SGMFTVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
Query: 286 LVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
L+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLS 327
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 54/232 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A +A + GRN+
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKN-------ALDGRNIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQNAQ---------------------------GRGDE 96
+ +S+H +L+ Q+ + G+ E
Sbjct: 181 LPEHIGPCTLRITYSAHTDLSVKFQSHRSRDYTNPNLPVAPSAIDGSGMFTVGLDGKKLE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS 206
+L+G IYDG C+L I +S +L + NN+RSRD+T PN PA +PS
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPN-PAMVNPQPS 351
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+R P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 10 FRLTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFMDLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|357130514|ref|XP_003566893.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Brachypodium distachyon]
Length = 544
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 174/333 (52%), Gaps = 47/333 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKVIHVRN+ E ++ +L +L PFG + TK + +NQA ++ D AI + +Y
Sbjct: 15 PSKVIHVRNLPWECTDEELAELGSPFGKVVNTKCNVGANRNQAFIEFADQNQAIAMISYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY-PITVEVLH 118
++ +P +RG+NVY+Q+S+ QE+ N++ GD +LLVT+ +L ++++VLH
Sbjct: 75 ASSAEPAQVRGKNVYLQYSNRQEIV----NSKSTGDAAGNVLLVTMEGVLPDAVSIDVLH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS G+V KI TF+K++G+QALIQ+ +A A+++L GR I DG C L
Sbjct: 131 LVFSAFGYVHKIATFEKASGYQALIQFSDAETASSAKAALDGRCIPSYLLPDLDGACTLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S L V + + RSRD+TNP LP A +A G
Sbjct: 191 INYSAHSVLNVKFQSHRSRDYTNPYLP-------------------------LAPSAIDG 225
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDE-DKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
GL G + +L S N I D L +FS +G + +I + +N HAL+Q
Sbjct: 226 SGL-DGKKQEAESNVLLASVENMQYIVTIDALHEVFSAFGFVHKIAIFEKNSGFHALIQY 284
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKH 319
D A A L+G ++ +L + FS+H
Sbjct: 285 PDIQTAVKAREALEGHSIYEGGYCKLHLTFSRH 317
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 40/256 (15%)
Query: 21 DLLQL-FQPFGVITKLVMLRAKN--QALLQMQDVPSAINALQ------FYTNVQPTIRGR 71
D+L L F FG + K+ + QAL+Q D +A +A + + P + G
Sbjct: 127 DVLHLVFSAFGYVHKIATFEKASGYQALIQFSDAETASSAKAALDGRCIPSYLLPDLDGA 186
Query: 72 -NVYVQFSSHQELTTMEQNAQGRG-----------------------DEPNRILLVTIHH 107
+ + +S+H L Q+ + R + + +LL ++ +
Sbjct: 187 CTLRINYSAHSVLNVKFQSHRSRDYTNPYLPLAPSAIDGSGLDGKKQEAESNVLLASVEN 246
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
M Y +T++ LH+VFS GFV KI F+K++GF ALIQY +AV AR +L+G +IY+G
Sbjct: 247 MQYIVTIDALHEVFSAFGFVHKIAIFEKNSGFHALIQYPDIQTAVKAREALEGHSIYEGG 306
Query: 168 -CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA---GVAFPQMANA 223
C+L + FS +L V NNER RD+T A PS G G P ++A
Sbjct: 307 YCKLHLTFSRHTDLNVRINNERGRDYTG-GSSAPANYEPSILGPQPTLPVGAVAPPYSSA 365
Query: 224 AAIAAAFGGGLPPGIT 239
+ AA G +PPG T
Sbjct: 366 S--PAATGAVVPPGTT 379
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K+IH+ LP + T+EE+ G +VNTK + QA + F + QA
Sbjct: 9 FRYTQPPSKVIHVRNLPWECTDEELAELGSPFGKVVNTKCNVGANRNQAFIEFADQNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
A++ +ASS + +R
Sbjct: 69 -AMISYYASSAEPAQVR 84
>gi|147804914|emb|CAN66869.1| hypothetical protein VITISV_013673 [Vitis vinifera]
Length = 755
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 181/338 (53%), Gaps = 44/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 325 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 384
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 385 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTSADVAGNVLLVTIEGADARLVSIDVLH 440
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GR+I + G C L
Sbjct: 441 LVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLR 500
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I FS +L V + + RSRD+TNP LP VA + + + F
Sbjct: 501 ITFSAHTDLSVKFQSHRSRDYTNPYLP----------------VASSAIDGSGQFSMGFD 544
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
G VL++++ + + + D L +FS +G I +I + +N AL+Q
Sbjct: 545 G------RKVEPESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQ 598
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L +++S+H +++
Sbjct: 599 YPDVQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLS 636
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 39/219 (17%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQD---VPSAINALQFYT---NVQPTIRGR 71
D+L L F FG + K+ A QAL+Q D +A NAL + + P G
Sbjct: 437 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGP 496
Query: 72 -NVYVQFSSHQELTTMEQNAQ---------------------------GRGDEP-NRILL 102
+ + FS+H +L+ Q+ + GR EP + +LL
Sbjct: 497 CTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVEPESNVLL 556
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VFS G ++KI F K+ G QALIQY +A+VA+ +L+G
Sbjct: 557 ASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAKEALEGHC 616
Query: 163 IYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE 200
IYD G C+L I +S +L + NN+RSRD+T+P L ++
Sbjct: 617 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSPVLSSQ 655
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 319 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 378
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 379 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 411
>gi|449522938|ref|XP_004168482.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Cucumis sativus]
Length = 457
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 185/339 (54%), Gaps = 42/339 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D P +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVPGNVLLVTIEGTDARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYLLPDHVGPCSLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ-SGYSEAGVAFPQMANAAAIAAAF 230
I +S +L V + + RSRD+TNP LP PS G ++ + F
Sbjct: 192 ITYSAHTDLTVKFQSHRSRDYTNPYLPVA----PSAIDGSGQSSLQF--------TVGLD 239
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
G L P VL++++ + + + + L +FS +G + +I + +N AL+
Sbjct: 240 GKKLEP-------ESNVLLASIENMQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQALI 292
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
Q D A +A L+G ++ +L +++S+H +++
Sbjct: 293 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 331
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 111/225 (49%), Gaps = 51/225 (22%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDV---PSAINALQ--------FYTNVQP 66
D+L L F FG + K+ A QAL+Q D SA NAL +V P
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYLLPDHVGP 187
Query: 67 TIRGRNVYVQFSSHQELTTMEQNAQ-------------------------------GRGD 95
++ + +S+H +LT Q+ + G+
Sbjct: 188 C----SLRITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGSGQSSLQFTVGLDGKKL 243
Query: 96 EP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
EP + +LL +I +M Y +T+EVLH VFS G V+KI F K+ G QALIQY +AVVA
Sbjct: 244 EPESNVLLASIENMQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQALIQYPDVQTAVVA 303
Query: 155 RSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
+ +L+G IYDG C+L I +S +L + NN+RSRD+T PN P
Sbjct: 304 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNNP 348
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|15238677|ref|NP_200130.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
gi|75333813|sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2
gi|9757999|dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like
[Arabidopsis thaliana]
gi|53749130|gb|AAU90050.1| At5g53180 [Arabidopsis thaliana]
gi|55733737|gb|AAV59265.1| At5g53180 [Arabidopsis thaliana]
gi|332008935|gb|AED96318.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
Length = 429
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 179/338 (52%), Gaps = 44/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVVGNVLLVTIEGDDARMVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-------GCCQLD 171
VFS GFV KI TF+K+AG+QAL+Q+ +A A+ +L GR+I G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP S +G GV +M
Sbjct: 192 ITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDS-TGQVAVGVDGKKM----------- 239
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
VL++++ + + + D L +F+ +G + +I + +N AL+Q
Sbjct: 240 ----------EPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L + +S+H +++
Sbjct: 290 YSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 106/212 (50%), Gaps = 39/212 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINA-LQFYTNVQP------TIRG 70
D+L L F FG + K+ A QAL+Q D +A A L P T+
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQ 187
Query: 71 RNVYVQFSSHQELTTMEQN---------------------------AQGRGDEP-NRILL 102
++ + +S+H +LT Q+ G+ EP + +LL
Sbjct: 188 CSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLL 247
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VF+ G V+KI F K+ G QALIQY +AVVA+ +L+G
Sbjct: 248 ASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHC 307
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFT 193
IYDG C+L I +S +L + NN+RSRD+T
Sbjct: 308 IYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G++VNTK + QA + FE QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ ++ +ASS + G + + +S Q I N
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|281205212|gb|EFA79405.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 437
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 162/317 (51%), Gaps = 28/317 (8%)
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178
++FSP+G V +IV FQK G QA ++++ SA VA+ +L G++IY G C L I F+ ++
Sbjct: 119 KIFSPYGRVLRIVIFQKK-GLQAFVEFESPYSAWVAKDALNGQDIYTGSCTLQIDFARVN 177
Query: 179 ELQVNYNNERSRDFT-----NPNLP--AEQKGRP------SQSGYSEAGVAFPQMANAAA 225
+L V N+E++ D+T P P G P +G+++ + AAA
Sbjct: 178 KLNVKVNDEKTTDYTMDLIQPPGAPIGMTAHGYPFAPAHMDPTGFTKQSAYMMNPSAAAA 237
Query: 226 IAAAFGGGLPP---GITG----TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 278
G+ P G G + ++V L + I D+LFN+F LYG +++IK+L
Sbjct: 238 APHPSAVGVQPHHPGFMGYPMEPMTQSVIMVHKL-PENITADQLFNIFCLYGTVLKIKML 296
Query: 279 RNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNR 338
N A+VQM DG QA+ A+H L A +FG++++V S+HP+I T +Y S LNR
Sbjct: 297 HNTKSGAMVQMADGIQADSAIHCLNLANIFGQKIQVFHSRHPSIADSEKTKDYSESPLNR 356
Query: 339 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLF---EMNGKK 393
F + Y+ P+ +H +P TE+++ G+ K F + K
Sbjct: 357 F-KAGLGTYKNIYKPSATLHFLNVPMTFTEKDLTHLFINSGASAPNQVKFFPPQPSSTKL 415
Query: 394 QALVLFETEEQATEALV 410
LV F + ATEAL+
Sbjct: 416 MGLVEFSDLKSATEALI 432
>gi|428170649|gb|EKX39572.1| hypothetical protein GUITHDRAFT_114298 [Guillardia theta CCMP2712]
Length = 580
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 130/242 (53%), Gaps = 28/242 (11%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
TEPSKV+H+RN+ E +E DL L FG + ++ L K+QA ++ + + L
Sbjct: 6 TEPSKVLHIRNLPEECNEGDLKTLASRFGEVRRVFHLSRKHQAFVEFVSLEDSARMLAEC 65
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG---------DEPN---RILLVTIHHML 109
+V + R + Q+S+ EL+ + +G G PN RILLVT+ +++
Sbjct: 66 ESVPIRVGTRVIVAQYSNKTELSPPTREYEGEGFVRERSWNAVPPNSDARILLVTVTNVV 125
Query: 110 YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQ 169
Y + V+V++QVFS G +EKIV F K QAL+Q++ A A G NIY+GC
Sbjct: 126 YKVDVDVMYQVFSMMGTIEKIVIFNKQGKTQALVQFERPADAQAALDRFNGLNIYNGCNN 185
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ--------------KGRP--SQSGYSEA 213
L I FSNL ++ V YNNERS DFTNPNLPA GRP SQS +S A
Sbjct: 186 LQIGFSNLLDITVKYNNERSYDFTNPNLPAGNPNESPADRYDMRPIDGRPPASQSNWSAA 245
Query: 214 GV 215
+
Sbjct: 246 AI 247
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 124/266 (46%), Gaps = 28/266 (10%)
Query: 194 NPNLPAEQKGRPSQSGYSEAGVA----FPQMANAAA-----IAAAFGGGLPPGITGTNDR 244
NP P P+ +G+ G+A P A A + G P + G
Sbjct: 317 NPLSPGWGGDSPNGAGFGTRGLAPDTRIPMPARGAPGLDPRSMYPYDMGRDP-MMGMYKS 375
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
+LV+NL+ DR+ D LFNLFS G I +IK+L NK D AL+Q AE A L
Sbjct: 376 PVILVNNLDPDRVTIDALFNLFSTCGIIQKIKILYNKRDSALIQFESPDHAENARITLNS 435
Query: 305 ALLFGKRLEVNFSKHPNI--------TQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTK 355
L+G+ L ++ SKH + +GA +Y SN+ R+ R A P+K
Sbjct: 436 CPLWGRNLVISTSKHDTVQANRSDIEEEGAKLFGDYSTSNIQRY-RGANARSIPSIEPSK 494
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF------EMNGKKQALVLFETEEQATEAL 409
++H+S +P VTE+++ ++G + K + +K ALV + + A EAL
Sbjct: 495 LLHISNIPLHVTEDDLKGLFADYGPVAKLKFISGRSETQTVDRKMALVELPSIQDAAEAL 554
Query: 410 VCKHASSLGGSIIRISF--SQLQSIR 433
H + L G +RISF S L S+R
Sbjct: 555 CYTHGTVLDGMRLRISFSTSNLDSLR 580
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 47/219 (21%)
Query: 112 ITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPSAVVAR-----SSLQGRNIYD 165
+T++ L +FS G ++KI + + K ALIQ++ A AR L GRN+
Sbjct: 388 VTIDALFNLFSTCGIIQKIKILYNKRD--SALIQFESPDHAENARITLNSCPLWGRNLV- 444
Query: 166 GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAA 225
I S D +Q N ++ E++G YS + + + ANA +
Sbjct: 445 ------ISTSKHDTVQANRSD------------IEEEGAKLFGDYSTSNIQRYRGANARS 486
Query: 226 IAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPD-- 283
I P I + + +SN+ + ED L LF+ YG + ++K + + +
Sbjct: 487 I---------PSIEPSK---LLHISNIPL-HVTEDDLKGLFADYGPVAKLKFISGRSETQ 533
Query: 284 -----HALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
ALV++ A A+ + G +L G RL ++FS
Sbjct: 534 TVDRKMALVELPSIQDAAEALCYTHGTVLDGMRLRISFS 572
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--------ALLQMQDVPSA 54
EPSK++H+ N+ ++E+DL LF +G + KL + +++ AL+++ + A
Sbjct: 491 EPSKLLHISNIPLHVTEDDLKGLFADYGPVAKLKFISGRSETQTVDRKMALVELPSIQDA 550
Query: 55 INALQFYTNVQPTIRGRNVYVQFSS 79
AL + + G + + FS+
Sbjct: 551 AEALCYTHGT--VLDGMRLRISFST 573
>gi|255636160|gb|ACU18422.1| unknown [Glycine max]
Length = 304
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 160/300 (53%), Gaps = 41/300 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L + + + RS D+TNP LP N AI A
Sbjct: 191 ISYSAHKDLNIKFQSNRSGDYTNPMLP----------------------VNYTAIEGAVQ 228
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 229 TAVGPDGKRKEPDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQ 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 52/170 (30%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGR------ 71
D++ L F FG + K+ A QAL+Q D +A +A + + GR
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSA-------RDALDGRSIPRYL 179
Query: 72 --------NVYVQFSSHQEL---------------------TTMEQNAQ------GRGDE 96
N+ + +S+H++L T +E Q G+ E
Sbjct: 180 LPAHVGSCNLRISYSAHKDLNIKFQSNRSGDYTNPMLPVNYTAIEGAVQTAVGPDGKRKE 239
Query: 97 PNR-ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
P+ +LL +I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY
Sbjct: 240 PDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQY 289
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|115453245|ref|NP_001050223.1| Os03g0376900 [Oryza sativa Japonica Group]
gi|18921326|gb|AAL82531.1|AC084766_17 putative polypyrimidine tract-binding protein [Oryza sativa
Japonica Group]
gi|108708433|gb|ABF96228.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113548694|dbj|BAF12137.1| Os03g0376900 [Oryza sativa Japonica Group]
gi|215692946|dbj|BAG88366.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192927|gb|EEC75354.1| hypothetical protein OsI_11790 [Oryza sativa Indica Group]
gi|222625006|gb|EEE59138.1| hypothetical protein OsJ_11035 [Oryza sativa Japonica Group]
Length = 464
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 184/343 (53%), Gaps = 57/343 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L PFG I TK + +NQA ++ D+ AI+ + ++
Sbjct: 19 PSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAISMVSYF 78
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 79 ASSSEPAQIRGKTVYIQYSNRQEIV----NNKSPGETAGNVLLVTIEGVQANDVTIDVIH 134
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS GFV KI TF+K+AGFQALIQY +A AR +L GR+I CC L
Sbjct: 135 LVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCC-L 193
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP N++AI
Sbjct: 194 RISFSAHKDLNIKFQSHRSRDYTNPYLP----------------------VNSSAIDT-- 229
Query: 231 GGGLPPGITGTNDR-----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKP 282
L P + G + R VL++++ + + + D L +FS +G + +I + +N
Sbjct: 230 ---LQPAV-GADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGG 285
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 286 TQALIQYPDVTTASVAKEALEGHCIYDGGYCKLHLSYSRHTDL 328
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A GR E +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY
Sbjct: 236 ADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDV 295
Query: 149 PSAVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
+A VA+ +L+G IYDG C+L + +S +L V ++++SRD+T P
Sbjct: 296 TTASVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIP 343
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V G IVNTK + QA V F QA
Sbjct: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 73 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNN 105
>gi|449456492|ref|XP_004145983.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Cucumis sativus]
Length = 776
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 181/340 (53%), Gaps = 48/340 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 339 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYY 398
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D P +LLVTI ++++VLH
Sbjct: 399 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVPGNVLLVTIEGTDARLVSIDVLH 454
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GR+I + G C L
Sbjct: 455 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYLLPDHVGPCSLR 514
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP A A
Sbjct: 515 ITYSAHTDLTVKFQSHRSRDYTNPYLP------------------------VAPSAIDGS 550
Query: 232 GGLPPGITGTN--DRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G G+ G VL++++ + + + + L +FS +G + +I + +N AL
Sbjct: 551 GQFTVGLDGKKLEPESNVLLASIENMQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQAL 610
Query: 287 VQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 611 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 650
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 111/221 (50%), Gaps = 47/221 (21%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDV---PSAINALQ--------FYTNVQP 66
D+L L F FG + K+ A QAL+Q D SA NAL +V P
Sbjct: 451 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYLLPDHVGP 510
Query: 67 TIRGRNVYVQFSSHQELTTMEQNAQ---------------------------GRGDEP-N 98
++ + +S+H +LT Q+ + G+ EP +
Sbjct: 511 C----SLRITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGSGQFTVGLDGKKLEPES 566
Query: 99 RILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158
+LL +I +M Y +T+EVLH VFS G V+KI F K+ G QALIQY +AVVA+ +L
Sbjct: 567 NVLLASIENMQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQALIQYPDVQTAVVAKEAL 626
Query: 159 QGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
+G IYD G C+L I +S +L + NN+RSRD+T PN P
Sbjct: 627 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNNP 667
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 333 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAI 392
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 393 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 425
>gi|297796143|ref|XP_002865956.1| hypothetical protein ARALYDRAFT_495390 [Arabidopsis lyrata subsp.
lyrata]
gi|297311791|gb|EFH42215.1| hypothetical protein ARALYDRAFT_495390 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 182/338 (53%), Gaps = 44/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + A G+ +LLVT+ ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGN----VLLVTVEGEDARMVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-------GCCQLD 171
VFS GFV KI TF+K+AG+QAL+Q+ +A A+++L GR+I G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGYQALVQFSDEETATSAKNALDGRSIPRYLLAEQVGQCSLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP +A + + +A
Sbjct: 192 ITYSAHTDLTVKFQSHRSRDYTNPYLP----------------IAPSAIDSTGQVAVGVD 235
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
G VL++++ + + + D L +F+ +G++ +I + +N AL+Q
Sbjct: 236 G------KKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGDVQKIAMFDKNGGLQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L + +S+H +++
Sbjct: 290 YKDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 123/251 (49%), Gaps = 57/251 (22%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A T+ + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFSDEETA-------TSAKNALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTMEQN---------------------------AQGRGDE 96
+ +S+H +LT Q+ G+ E
Sbjct: 181 LAEQVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPIAPSAIDSTGQVAVGVDGKKME 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +T++VLH VF+ G V+KI F K+ G QALIQY+ +AVVA+
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGDVQKIAMFDKNGGLQALIQYKDVQTAVVAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+L+G IYDG C+L I +S +L + NN+RSRD+T PN P +PSQ+ Y+
Sbjct: 301 EALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPSQNPYT--- 357
Query: 215 VAFPQMANAAA 225
PQ +AA
Sbjct: 358 -GNPQQYHAAG 367
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G++VNTK + QA + FE QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ ++ +ASS + G + + +S Q I N
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|440793956|gb|ELR15127.1| protein kinase domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 515
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 122/202 (60%), Gaps = 26/202 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKV+H RNV E+++ D+++L PFG + K+VML +KNQALL+ D+ +AI+ FY +
Sbjct: 163 PSKVLHFRNVTSELTQEDIMELAAPFGTVEKVVMLTSKNQALLEFADIAAAISMSNFYLS 222
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTI---HHMLYPITVEVLHQV 120
QP IRGR VY++FS HQ+LT +A G PNRILLVT+ + PIT +++ Q+
Sbjct: 223 TQPNIRGRKVYMRFSRHQQLTA---SAAG----PNRILLVTLQTEQEPVIPITADIVWQI 275
Query: 121 FSPHGFVEKIVTF-----------QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC-- 167
FS +GF+EKIV ++ + Q L+Q+ SA A L G+ +Y G
Sbjct: 276 FSSYGFIEKIVVMNRQSQEYAEESRRDSRLQTLVQFSSPASAQTASQYLNGKTVYVGTDP 335
Query: 168 ---CQLDIQFSNLDELQVNYNN 186
L IQ+S+L +L V +N+
Sbjct: 336 IMSITLFIQYSHLTQLTVKHNS 357
>gi|17136488|ref|NP_476731.1| smooth, isoform A [Drosophila melanogaster]
gi|78707266|ref|NP_001027440.1| smooth, isoform E [Drosophila melanogaster]
gi|1321808|emb|CAA66282.1| smooth [Drosophila melanogaster]
gi|7302450|gb|AAF57535.1| smooth, isoform A [Drosophila melanogaster]
gi|71911687|gb|AAZ52802.1| smooth, isoform E [Drosophila melanogaster]
Length = 475
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 176/373 (47%), Gaps = 40/373 (10%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT---NPNLPAEQKGRPSQSGYS 211
+L G +IY GCC L I ++ ++L V Y NE S D+T P L P G
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTEPPLLGPGAAFPP-FGAP 195
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDE 259
E P+ AAI P G+ G ++V L+ D +
Sbjct: 196 EYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNT 255
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK 318
DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G ++++ FSK
Sbjct: 256 DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSK 315
Query: 319 HPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
+++ EY S NRF A + P+K++H P +TE
Sbjct: 316 QNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTE 375
Query: 369 EEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS---- 420
++++ + + +LF + ++ + L+ F QA A++ C H G
Sbjct: 376 DQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFP 435
Query: 421 -IIRISFSQLQSI 432
I+++ FS +S+
Sbjct: 436 FIMKLCFSSSKSM 448
>gi|294955170|ref|XP_002788430.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239903853|gb|EER20226.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 366
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 3/195 (1%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PSKV++VRNV ++E D++ FG + +++LR K ++ +D SAI +Y
Sbjct: 11 QPSKVLYVRNVPESVTEQDIIAYCLTFGRVVNILLLRDKRHGFIEFEDESSAIKCYTYYN 70
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
I G + FS E+T + PNRILL TI +++YP+TV+V+ QV +
Sbjct: 71 ANPLLITGHRLEFAFSGRSEITARRD---PDSNPPNRILLFTITNLVYPVTVDVISQVMN 127
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
G +EK++ F + QAL+Q +A VA+ L G+NIY GC + +Q+S+L +L+V
Sbjct: 128 KFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEV 187
Query: 183 NYNNERSRDFTNPNL 197
+NNERS DFTNP+L
Sbjct: 188 KHNNERSWDFTNPSL 202
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V+V LN D L LF++YGN++R+K++ ALVQM D Q A+ +L+
Sbjct: 295 VIVHGLNEQETRPDDLAALFAVYGNVVRVKIMFKARHTALVQMQDMQQCRTAISYLQDVW 354
Query: 307 LFGKRLEVNFSK 318
L G +L + SK
Sbjct: 355 LHGNQLTMEMSK 366
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+K++++ +P+ VTE++I+++ G +VN L + K+ + FE E A +
Sbjct: 12 PSKVLYVRNVPESVTEQDIIAYCLTFGRVVNILL--LRDKRHGFIEFEDESSAIKCYTYY 69
Query: 413 HASSLGGSIIRISFS 427
+A+ L + R+ F+
Sbjct: 70 NANPLLITGHRLEFA 84
>gi|195056920|ref|XP_001995181.1| GH22768 [Drosophila grimshawi]
gi|193899387|gb|EDV98253.1| GH22768 [Drosophila grimshawi]
Length = 482
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 177/373 (47%), Gaps = 40/373 (10%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ +PHG V +IV F+K+ G QA++++ SA AR
Sbjct: 86 PNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDNLDSATRARE 144
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFT---NPNLPAEQKGRPSQSGYS 211
+L G +IY GCC L I F+ ++L V Y NE S D+T P L P G
Sbjct: 145 NLNGADIYAGCCTLKIDFAKPEKLNV-YKNESDTSWDYTLSTEPPLLGPGTAFPP-FGAP 202
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDE 259
E P AAI P G+ G ++V ++ D +
Sbjct: 203 EYHPTQPDNWKGAAIHPTGLMKEPTGVVAGRNAPVAFAQQGQAQGAVMMVYGMDHDTSNT 262
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK 318
DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G ++++ FSK
Sbjct: 263 DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDSVAVERCVQHLNNIPVGTGGKIQIAFSK 322
Query: 319 HPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
+++ + EY S NRF A + P+K++H P +TE
Sbjct: 323 QNFLSEVINPFLLPDHTPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTE 382
Query: 369 EEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS---- 420
++++ + + +LF + ++ + L+ F QA A++ C H G
Sbjct: 383 DQLIGIFNIKEVPATSVRLFPLKTERSSSGLIEFPNISQAVLAIMKCNHLPIEGKGTKFP 442
Query: 421 -IIRISFSQLQSI 432
I+++ FS +S+
Sbjct: 443 FIMKLCFSSSKSM 455
>gi|356546193|ref|XP_003541515.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 428
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 182/341 (53%), Gaps = 50/341 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E++L++L + FG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEDELIELGKLFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTAADVAGNVLLVTIEGEDARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+ +L GR+I + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHIGPCGLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP Q +A G
Sbjct: 192 ITYSGHSDLSVKFQSHRSRDYTNPYLPVAQ-------------------------SAMEG 226
Query: 232 GGLP-PGITGT--NDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHA 285
G P G+ G VL++++ + + + D L +FS +G + +I + +N A
Sbjct: 227 SGQPMVGLDGKRLEAESNVLLASIENMQYTVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
Query: 286 LVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
L+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 287 LIQYPDIQTAVVAKETLEGHCIYDGGFCKLHISYSRHTDLS 327
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 53/224 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A T+ + + GR++
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETA-------TSAKDALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELT---------------------TMEQNAQ-------GRGD 95
+ +S H +L+ ME + Q R +
Sbjct: 181 LPEHIGPCGLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLE 240
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +LL +I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+
Sbjct: 241 AESNVLLASIENMQYTVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198
+L+G IYDG C+L I +S +L + NNERSRD+T PN+P
Sbjct: 301 ETLEGHCIYDGGFCKLHISYSRHTDLSIKVNNERSRDYTIPNVP 344
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
+ +RY P+K++HL LP + TE+E++ + G +VNTK + QA + F Q
Sbjct: 8 QQFRYTQPPSKVLHLRNLPWECTEDELIELGKLFGKVVNTKCNVGANRNQAFIEFADLNQ 67
Query: 405 ATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A A++ +ASS + G + + +S Q I N
Sbjct: 68 AI-AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|195123985|ref|XP_002006482.1| GI18546 [Drosophila mojavensis]
gi|193911550|gb|EDW10417.1| GI18546 [Drosophila mojavensis]
Length = 481
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 177/373 (47%), Gaps = 40/373 (10%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ +PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 85 PNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDSLDAATRARE 143
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFT---NPNLPAEQKGRPSQSGYS 211
+L G +IY GCC L I F+ ++L V Y NE S D+T P L P G
Sbjct: 144 NLNGADIYAGCCTLKIDFAKPEKLNV-YKNETDTSWDYTLSTEPPLLGPGTAFPP-FGAP 201
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDE 259
E P AAI P G+ G ++V ++ D +
Sbjct: 202 EYHPTQPDNWKGAAIHPTGLMKEPTGVVAGRNAPVAFAQQGQAQGAVMMVYGMDHDTSNT 261
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK 318
DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G ++++ FSK
Sbjct: 262 DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDSVAVERCVQHLNNIPVGTGGKIQIAFSK 321
Query: 319 HPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
+++ + EY S NRF A + P+K++H P +TE
Sbjct: 322 QNFLSEVINPFLLPDHTPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTE 381
Query: 369 EEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS---- 420
++++ + + +LF + ++ + L+ F QA A++ C H G
Sbjct: 382 DQLIGIFNIKEVPATSVRLFPLKTERSSSGLIEFPNISQAVLAIMKCNHLPIEGKGTKFP 441
Query: 421 -IIRISFSQLQSI 432
I+++ FS +S+
Sbjct: 442 FIMKLCFSSSKSM 454
>gi|357463843|ref|XP_003602203.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355491251|gb|AES72454.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 828
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 181/340 (53%), Gaps = 48/340 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 340 PSKVLHLRNLPWECTEEELIELGNPFGKVVNTKCNVGSNRNQAFIEFADLNQAIAMISYY 399
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + A G+ +LLVT+ ++++VLH
Sbjct: 400 ASSSEPAQVRGKTVYLQYSNRQEIVHNKTAADVAGN----VLLVTVEGEDARLVSIDVLH 455
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+ +L GR+I + G C L
Sbjct: 456 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLSEHVGPCTLK 515
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP Q A G
Sbjct: 516 ITYSGHSDLTVKFQSHRSRDYTNPYLPVAQS------------------------AIEGG 551
Query: 232 GGLPPGITGT--NDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G + G+ G VL++++ + + + D L +FS +G I +I + +N AL
Sbjct: 552 GQVMIGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQAL 611
Query: 287 VQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 612 IQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLS 651
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 53/225 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A T+ + + GR++
Sbjct: 452 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETA-------TSAKDALDGRSIPRYL 504
Query: 74 ----------YVQFSSHQELTTMEQNAQGRG----------------------------D 95
+ +S H +LT Q+ + R +
Sbjct: 505 LSEHVGPCTLKITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAIEGGGQVMIGLDGKRLE 564
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +LL +I +M Y +T++VLH VFS G ++KI F K+ G QALIQY +AVVA+
Sbjct: 565 AESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAVVAK 624
Query: 156 SSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
+L+G IYD G C+L + +S +L + NN+RSRD+T P +P
Sbjct: 625 EALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPMIPV 669
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
++ + +RY P+K++HL LP + TEEE++ G +VNTK + + QA + F
Sbjct: 329 SSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGNPFGKVVNTKCNVGSNRNQAFIEFAD 388
Query: 402 EEQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA A++ +ASS + G + + +S Q I N
Sbjct: 389 LNQAI-AMISYYASSSEPAQVRGKTVYLQYSNRQEIVHN 426
>gi|354504485|ref|XP_003514305.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
Length = 322
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 17/224 (7%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR++ +++E++++ L PFG +T L+ML+ KNQA ++M +A + +Y
Sbjct: 56 PSRVIHVRSLPSDVTEDEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYX- 114
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
N+ + S+ M Q + +L + + ++ YP+T++VLHQ+FS
Sbjct: 115 -------XNLALAASAAAVDAGMAMAGQ------SPVLRILVENLFYPVTLDVLHQIFSK 161
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V KI+TF K+ FQAL+QY SA A+ SL G+NIY C L I FS L L V
Sbjct: 162 FGTVLKIITFTKNNRFQALLQYADPVSAQHAKLSLDGQNIYKAWCSLRIDFSKLTSLYVK 221
Query: 184 YNNERSRDFTNPNLPAEQKGRPS--QSGYSEAGVAFPQMANAAA 225
YNN++SRD+T P+LP+ +PS Q+ + G++ P + A A
Sbjct: 222 YNNDKSRDYTRPDLPSGDS-QPSLDQTMAAAFGLSVPNVHRALA 264
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ +LP DVTE+E++S G + N L
Sbjct: 31 MSSSTSAANGNDSKKFKGDNRSTGVPSRVIHVRSLPSDVTEDEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQA 405
+ GK QA + TEE A
Sbjct: 89 MLKGKNQAFIEMNTEEAA 106
>gi|108708434|gb|ABF96229.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
Length = 318
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 163/319 (51%), Gaps = 40/319 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L PFG I TK + +NQA ++ D+ AI+ + ++
Sbjct: 19 PSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAISMVSYF 78
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 79 ASSSEPAQIRGKTVYIQYSNRQEIV----NNKSPGETAGNVLLVTIEGVQANDVTIDVIH 134
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS GFV KI TF+K+AGFQALIQY +A AR +L GR+I CC L
Sbjct: 135 LVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCC-L 193
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+TNP LP S P + A
Sbjct: 194 RISFSAHKDLNIKFQSHRSRDYTNPYLPVNS---------SAIDTLQPAVGADGRKVEAE 244
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
G L I TV D L +FS +G + +I + +N AL+Q
Sbjct: 245 GNVLLASIENMQYAVTV------------DVLHTVFSAFGTVQKIAIFEKNGGTQALIQY 292
Query: 290 GDGFQAELAVHFLKGALLF 308
D A +A L+G ++
Sbjct: 293 PDVTTASVAKEALEGHCIY 311
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A GR E +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY
Sbjct: 236 ADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDV 295
Query: 149 PSAVVARSSLQGRNIYDG--CCQ 169
+A VA+ +L+G IYDG C Q
Sbjct: 296 TTASVAKEALEGHCIYDGGYCTQ 318
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V G IVNTK + QA V F QA
Sbjct: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 73 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNN 105
>gi|195380768|ref|XP_002049133.1| GJ21415 [Drosophila virilis]
gi|194143930|gb|EDW60326.1| GJ21415 [Drosophila virilis]
Length = 480
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 177/373 (47%), Gaps = 40/373 (10%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ +PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 85 PNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDSLDAATRARE 143
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFT---NPNLPAEQKGRPSQSGYS 211
+L G +IY GCC L I F+ ++L V Y NE S D+T P L P G
Sbjct: 144 NLNGADIYAGCCTLKIDFAKPEKLNV-YKNETDTSWDYTLSTEPPLLGPGTAFPP-FGAP 201
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDE 259
E P AAI P G+ G ++V ++ D +
Sbjct: 202 EYHPTQPDNWKGAAIHPTGLMKEPTGVVAGRNAPVAFAQQGQAQGAVMMVYGMDHDTSNT 261
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG-ALLFGKRLEVNFSK 318
DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G ++++ FSK
Sbjct: 262 DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDSVAVERCVQHLNNIPVGTGGKIQIAFSK 321
Query: 319 HPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
+++ + EY S NRF A + P+K++H P +TE
Sbjct: 322 QNFLSEVINPFLLPDHTPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTE 381
Query: 369 EEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS---- 420
++++ + + +LF + ++ + L+ F QA A++ C H G
Sbjct: 382 DQLIGIFNIKEVPATSVRLFPLKTERSSSGLIEFPNISQAVLAIMKCNHLPIEGKGTKFP 441
Query: 421 -IIRISFSQLQSI 432
I+++ FS +S+
Sbjct: 442 FIMKLCFSSSKSM 454
>gi|195431604|ref|XP_002063826.1| GK15699 [Drosophila willistoni]
gi|194159911|gb|EDW74812.1| GK15699 [Drosophila willistoni]
Length = 478
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 178/373 (47%), Gaps = 40/373 (10%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ +PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 82 PNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDSLDAATRARE 140
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT---NPNLPAEQKGRPSQSGYS 211
+L G +IY GCC L I ++ ++L V Y NE S D+T P L P G
Sbjct: 141 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTEPPLLGPGTAFPP-FGAP 198
Query: 212 EAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDE 259
E P+ AAI P G+ G ++V L+ D +
Sbjct: 199 EYHPTTPENWKGAAIHPTGLMKEPTGVVPGRNAPVAFTPQGQAQGGVMMVYGLDHDTSNT 258
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK 318
DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G ++++ FSK
Sbjct: 259 DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDSVAVERCVQHLNNIPVGTGGKIQIAFSK 318
Query: 319 HPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
+++ + EY S NRF A + P+K++H P +TE
Sbjct: 319 QNFLSEVINPFLLPDHTPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTE 378
Query: 369 EEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS---- 420
++++ + + +LF + ++ + L+ F QA A++ C H G
Sbjct: 379 DQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFPNISQAVLAIMKCNHLPIEGKGTKFP 438
Query: 421 -IIRISFSQLQSI 432
I+++ FS +S+
Sbjct: 439 FIMKLCFSSSKSM 451
>gi|281363805|ref|NP_001027439.2| smooth, isoform H [Drosophila melanogaster]
gi|40882465|gb|AAR96144.1| RE74969p [Drosophila melanogaster]
gi|272432576|gb|AAZ52803.2| smooth, isoform H [Drosophila melanogaster]
Length = 480
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 176/378 (46%), Gaps = 45/378 (11%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT--------NPNLPAEQKGRPS 206
+L G +IY GCC L I ++ ++L V Y NE S D+T P L P
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEILPKPPLLGPGAAFPP 196
Query: 207 QSGYSEAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNS 254
G E P+ AAI P G+ G ++V L+
Sbjct: 197 -FGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDH 255
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLE 313
D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G +++
Sbjct: 256 DTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQ 315
Query: 314 VNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
+ FSK +++ EY S NRF A + P+K++H P
Sbjct: 316 IAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTP 375
Query: 364 QDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGG 419
+TE++++ + + +LF + ++ + L+ F QA A++ C H G
Sbjct: 376 PGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGK 435
Query: 420 S-----IIRISFSQLQSI 432
I+++ FS +S+
Sbjct: 436 GTKFPFIMKLCFSSSKSM 453
>gi|357496461|ref|XP_003618519.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355493534|gb|AES74737.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 483
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 180/356 (50%), Gaps = 48/356 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H RN+ E S+ +L L PFG + TK + +NQA +Q ++ AI+ + +Y
Sbjct: 16 PSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQAISMVSYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ + N+ GD P +LLVTI + ++++V+H
Sbjct: 76 ASSSEPAQVRGKTVYIQYSNRHHIV----NSNSPGDIPGNVLLVTIEGVEAGDVSIDVIH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV K+ TF+K+AGFQALIQY +A A+ SL GR+I + G C L
Sbjct: 132 LVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----SGYSEAGVAFPQMANAAA-- 225
I +S +L + + + RSRD+TNP LP Q S Y F N
Sbjct: 192 ISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQVYCSYFLPLYMFCIFLNVLTTL 251
Query: 226 -IAAAFGGGLPPG-----------ITGTNDRCTVLVSNLNSDRIDEDKLF---NLFSLYG 270
+ A G P G T N + V + L+S RI LF +FS +G
Sbjct: 252 DVQPAIG---PDGKRKEHKSNVLLATIENMQYAVPLDVLHSVRI----LFLIKRVFSAFG 304
Query: 271 NIIRIKLL-RNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
+ ++ + +N HAL+Q D A A L+G ++ +L + +S+H ++
Sbjct: 305 FVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDGGYCKLHLTYSRHTDL 360
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 17/136 (12%)
Query: 83 LTTME-QNAQG----RGDEPNRILLVTIHHMLYPITVEVLH---------QVFSPHGFVE 128
LTT++ Q A G R + + +LL TI +M Y + ++VLH +VFS GFV+
Sbjct: 248 LTTLDVQPAIGPDGKRKEHKSNVLLATIENMQYAVPLDVLHSVRILFLIKRVFSAFGFVQ 307
Query: 129 KIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNE 187
K+ F K+ ALIQY A A+ +L+G IYD G C+L + +S +L V ++
Sbjct: 308 KVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSD 367
Query: 188 RSRDFT--NPNLPAEQ 201
+SRD+T +P+L A Q
Sbjct: 368 KSRDYTVLDPSLHAAQ 383
>gi|118488039|gb|ABK95840.1| unknown [Populus trichocarpa]
Length = 442
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 181/340 (53%), Gaps = 48/340 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGPNRNQAFIEFSDLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + A G+ +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVGGN----VLLVTIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A A+++L GRNI + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TN NLP A A
Sbjct: 192 ITYSAHTDLSVKFQSHRSRDYTNANLP------------------------VAPSAIDAN 227
Query: 232 GGLPPGITGTN--DRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G G+ G VL++++ + + + D L +FS +G + +I + +N AL
Sbjct: 228 GMFSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQAL 287
Query: 287 VQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHSDLS 327
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 109/222 (49%), Gaps = 53/222 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A +A + GRN+
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKN-------ALDGRNIPSYL 180
Query: 74 ----------YVQFSSHQELTTMEQNAQ---------------------------GRGDE 96
+ +S+H +L+ Q+ + G+ E
Sbjct: 181 LPEHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+L+G IYDG C+L + +S +L + NN+RSRD+T PN
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPN 342
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+R P+K++HL LP + TEEE+V + G +VNTK + QA + F QA
Sbjct: 10 FRLTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGPNRNQAFIEFSDLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|224135279|ref|XP_002322027.1| predicted protein [Populus trichocarpa]
gi|222869023|gb|EEF06154.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 182/340 (53%), Gaps = 48/340 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG V TK + +NQA ++ D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELVELGKPFGNVVNTKCNVGPNRNQAFIEFADLNQAIAMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + A G+ +LL+TI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADAGGN----VLLITIEGADARLVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K FQAL+Q+ +A A+++L GRNI + G C L
Sbjct: 132 LVFSAFGFVHKITTFEKMDRFQALVQFSDVETASSAKNALDGRNIPSYLLPEHLGPCTLR 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNPNLP Q +AI A
Sbjct: 192 IAYSGHTDLSVKFQSHRSRDYTNPNLPVAQ----------------------SAIDA--N 227
Query: 232 GGLPPGITGTN--DRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G G+ G VL++++ + + + D L +FS +G + +I + +N AL
Sbjct: 228 GMFSMGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNSGLQAL 287
Query: 287 VQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHNDLS 327
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 53/222 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLRAKN--QALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ + QAL+Q DV +A +A + GRN+
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKMDRFQALVQFSDVETASSAKN-------ALDGRNIPSYL 180
Query: 74 ----------YVQFSSHQELTTMEQNAQ---------------------------GRGDE 96
+ +S H +L+ Q+ + G+ E
Sbjct: 181 LPEHLGPCTLRIAYSGHTDLSVKFQSHRSRDYTNPNLPVAQSAIDANGMFSMGLDGKKLE 240
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +T++VLH VFS G V+KI F K++G QALIQY +AVVA+
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNSGLQALIQYPDVQTAVVAK 300
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+L+G IYDG C+L + +S ++L + NN+RSRD+T PN
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHNDLSIKVNNDRSRDYTIPN 342
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+R P+K++HL LP + TEEE+V + G++VNTK + QA + F QA
Sbjct: 10 FRLTQPPSKVLHLRNLPWECTEEELVELGKPFGNVVNTKCNVGPNRNQAFIEFADLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>gi|242058047|ref|XP_002458169.1| hypothetical protein SORBIDRAFT_03g028150 [Sorghum bicolor]
gi|241930144|gb|EES03289.1| hypothetical protein SORBIDRAFT_03g028150 [Sorghum bicolor]
Length = 553
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 171/333 (51%), Gaps = 48/333 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ + + +L++L PFG + TK + +NQA ++ D AI + +Y
Sbjct: 15 PSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFIEFADQNQAIAMISYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY-PITVEVLH 118
++ +P +RG+NVY+Q+S+ QE+ + +G G+ +LLV + + ++++VLH
Sbjct: 75 ASSAEPAQVRGKNVYLQYSNRQEIINNKTTGEGSGN----VLLVGMEGVAPDSVSIDVLH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K++G+QALIQ+ +A A+++L GR I DG C L
Sbjct: 131 VVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYLLPELDGACTLK 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S L V Y + RSRDFTNP LP ++A A+
Sbjct: 191 ISYSAHSVLNVKYQSHRSRDFTNPYLP---------------------FLDSAKDASGLD 229
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
G +L++++ + + + D L +FS +G + +I + AL+Q
Sbjct: 230 G------KKQEAESNILLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNGFQALIQY 283
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKH 319
D A A L+G ++ +L + FS+H
Sbjct: 284 PDIQTAVAAKEALEGHSIYEGGYCKLHLTFSRH 316
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 62/340 (18%)
Query: 7 VIHVRNVGHEISENDLLQL-FQPFGVITKLVMLRAKN--QALLQMQDVPSAINALQ---- 59
++ + V + D+L + F FG + K+ + QAL+Q D +A +A
Sbjct: 113 LVGMEGVAPDSVSIDVLHVVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDG 172
Query: 60 --FYTNVQPTIRGR-NVYVQFSSHQELTTMEQNAQGRG---------------------- 94
+ + P + G + + +S+H L Q+ + R
Sbjct: 173 RCIPSYLLPELDGACTLKISYSAHSVLNVKYQSHRSRDFTNPYLPFLDSAKDASGLDGKK 232
Query: 95 -DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ + ILL ++ +M Y +T++VLH+VFS GFV+KI F+K+ GFQALIQY +AV
Sbjct: 233 QEAESNILLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKN-GFQALIQYPDIQTAVA 291
Query: 154 ARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSG--- 209
A+ +L+G +IY+G C+L + FS EL V NNER RD+T N+ RPS G
Sbjct: 292 AKEALEGHSIYEGGYCKLHLTFSRHTELNVKVNNERGRDYTKGNV-TPSSDRPSILGPQP 350
Query: 210 YSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY 269
G A P + A + G D + SN +S+ + L
Sbjct: 351 IPNVGAAIPPAPGSVATNSVMQPG---------DPSVAVPSNPSSEPL----------LQ 391
Query: 270 GNIIRIKLLRNKPDHALVQMGDG----FQAELAVHFLKGA 305
++ P+ A++Q G F A+ F +G+
Sbjct: 392 APVVSSGGPAQYPNQAILQAPPGVAPQFPGYGALQFAQGS 431
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP D T EE+V G +VNTK + QA + F + QA
Sbjct: 9 FRYTQPPSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFIEFADQNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 69 -AMISYYASSAEPAQVRGKNVYLQYSNRQEIINN 101
>gi|328724092|ref|XP_001949062.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Acyrthosiphon pisum]
Length = 428
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 184/375 (49%), Gaps = 49/375 (13%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN ILL+TI + YPI +V+H + HG V +IV F+K G QA+++Y+ A+ A+
Sbjct: 51 QPNHILLLTITKVTYPINTDVIHTISKDHGNVMRIVIFRKR-GVQAMVEYEEVEQAIRAK 109
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV 215
+ G +IY GCC L ++++ +L V N+ + D+T PN P E+K P A +
Sbjct: 110 QLMDGADIYQGCCTLRVEYAKPSKLNVYKNDSETWDYTTPN-PGEKKTAPLLPDPPRAPL 168
Query: 216 -----AFPQM---ANAAAIAAA-------FGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
FP+ ++ +G P T RC ++V L+ D+ + +
Sbjct: 169 ISTRPTFPRFDFECRGGLLSTPHDLPNNNYGDSYP----ATPGRCVLMVYGLDPDKANCN 224
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL-KGALLFGKRLEVNFSKH 319
+LFNLF LYGN+++IK L++K A+VQM + + + L K L+ G L++ SK
Sbjct: 225 RLFNLFCLYGNVVKIKFLKSKEGCAMVQMDNEMSVDRCMDNLNKLTLISGNVLQLQVSKQ 284
Query: 320 --------P-NITQGADT-HEYMNSNLNRFNRNA-AKNYRYCCSPTKMIHLSTLPQDVTE 368
P ++ G + +Y NS NR++ N+ KN R +P+ ++H P +++E
Sbjct: 285 MYLSDIMVPYDLPDGTPSFKDYSNSKNNRYHSNSNGKNRRQ--TPSSVLHFFNAPPNISE 342
Query: 369 EEIVSHLEEHGSIVNT----KLFEMNGKK----QALVLFETEEQATEALVC------KHA 414
++ + + V+ K+F G + LV F A E ++ K
Sbjct: 343 ADLSQTISKAVKDVDPKIIIKMFPPKGTEARSSSGLVEFTDMAIAVEVIMAVNHWPIKCE 402
Query: 415 SSLGGSIIRISFSQL 429
SS ++R+ FS L
Sbjct: 403 SSKFPYLLRLCFSSL 417
>gi|386768327|ref|NP_001246433.1| smooth, isoform Z [Drosophila melanogaster]
gi|383302606|gb|AFH08186.1| smooth, isoform Z [Drosophila melanogaster]
Length = 491
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 178/388 (45%), Gaps = 54/388 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNP------NLPAEQKGRPSQS 208
+L G +IY GCC L I ++ ++L V Y NE S D+T ++P SQ
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGKSLFSIPENVVMLESQP 196
Query: 209 GYSEAGVAFPQMA------------NAAAIAAAFGGGLPPGIT------------GTNDR 244
G AFP AAI P G+ G
Sbjct: 197 PLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQG 256
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 257 AVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNN 316
Query: 305 ALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
+ G ++++ FSK +++ EY S NRF A + P
Sbjct: 317 IPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPP 376
Query: 354 TKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
+K++H P +TE++++ + + +LF + ++ + L+ F QA A++
Sbjct: 377 SKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIM 436
Query: 411 -CKHASSLGGS-----IIRISFSQLQSI 432
C H G I+++ FS +S+
Sbjct: 437 KCNHLPIEGKGTKFPFIMKLCFSSSKSM 464
>gi|301103606|ref|XP_002900889.1| polypyrimidine tract-binding protein, putative [Phytophthora
infestans T30-4]
gi|262101644|gb|EEY59696.1| polypyrimidine tract-binding protein, putative [Phytophthora
infestans T30-4]
Length = 655
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 144/546 (26%), Positives = 238/546 (43%), Gaps = 128/546 (23%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+ V + + E++LL L PF V+ K +M+ K QA +Q+ DV SA N + FY
Sbjct: 24 SRVVFVCGLPADCLESELLALCCPFAVVEKSLMIPQKRQAFVQLPDVTSASNLVTFYQTR 83
Query: 65 QPTIRGRNVYVQFSS--------------------------HQELTTMEQNAQG------ 92
IRG+ ++ ++S+ +Q+L +M+Q
Sbjct: 84 DALIRGKKIFFEYSNRNEITVRPEHDGPPSYQPQPAPIAAPYQQLPSMQQYPPQQEVPLY 143
Query: 93 RGD------------------EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ 134
RGD PN+IL+V++ + Y +TV+VL QVF G V+KIVTF
Sbjct: 144 RGDNGGQLGLLPIDGPRRGIGPPNQILMVSVSKIEYDVTVDVLQQVFQKFGNVQKIVTFW 203
Query: 135 KSAGFQALI------QYQLRPSAVVARSSLQGRN----IYDGCCQLDIQFSNLDELQVNY 184
K F++L+ Q Q SA+ R G N ++ +L ++++ D+ +Y
Sbjct: 204 KDNEFKSLVQMESVDQAQAAQSALDGRDIYTGCNQLSIVFSRHPELRVRYN--DDRSRDY 261
Query: 185 NNE-------RSRDFTNPNLPA----EQKGRPSQ-------------SGYSEA---GVAF 217
N R D N PA + P Q G + A G
Sbjct: 262 TNPNLPPGPGRGGDDRNEGEPATTILSDRREPPQYSIPSPRRDDFDYRGPTHAPNVGRGD 321
Query: 218 P---QMANAAAIAAAF---------------GGGLPPGITG------TNDRCTVLVSNLN 253
P M + A F G LP TG T ++ SN++
Sbjct: 322 PYALDMRDNRGPPARFDDRPPIVERPRDARGGRELPIHSTGRAIRGDTRPSPALICSNID 381
Query: 254 SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE 313
+ + ++F LF +G+++RIK++ K D AL+Q D + A+ L G +FGK+L
Sbjct: 382 RELVSPHRIFTLFGCFGDVLRIKIMFRKRDTALIQFVDEVHSTSALDHLDGVYVFGKKLR 441
Query: 314 VNFSKHPNITQ---GAD------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 364
V++SKH +++ AD T ++ NS L+R+ R + + SP ++H+S +P
Sbjct: 442 VDYSKHTSVSMPHADADRFEIENTLDFSNSPLHRYRRRSPQE---AVSPCPLLHISGIPM 498
Query: 365 DVTEEE--IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 422
D+ + +V ++G + N + N K AL+ + ++A AL+ S +
Sbjct: 499 DLQRNQNALVDLFAQYGFVKNFHYMQ-NNSKMALLEMGSVDEAIMALLRLDNMEYPDSHM 557
Query: 423 RISFSQ 428
RISFS+
Sbjct: 558 RISFSR 563
>gi|195487089|ref|XP_002091762.1| GE13838 [Drosophila yakuba]
gi|194177863|gb|EDW91474.1| GE13838 [Drosophila yakuba]
Length = 491
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 178/388 (45%), Gaps = 54/388 (13%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNP------NLPAEQKGRPSQS 208
+L G +IY GCC L I ++ ++L V Y NE S D+T ++P SQ
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGKSLFSIPENVVMLESQP 196
Query: 209 GYSEAGVAFPQMA------------NAAAIAAAFGGGLPPGIT------------GTNDR 244
G AFP AAI P G+ G
Sbjct: 197 PLLGPGAAFPPFGAPEYHPTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQG 256
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 257 AVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNN 316
Query: 305 ALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
+ G ++++ FSK +++ EY S NRF A + P
Sbjct: 317 IPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPP 376
Query: 354 TKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
+K++H P +TE++++ + + +LF + ++ + L+ F QA A++
Sbjct: 377 SKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIM 436
Query: 411 -CKHASSLGGS-----IIRISFSQLQSI 432
C H G I+++ FS +S+
Sbjct: 437 KCNHLPIEGKGTKFPFIMKLCFSSSKSM 464
>gi|242040789|ref|XP_002467789.1| hypothetical protein SORBIDRAFT_01g034060 [Sorghum bicolor]
gi|241921643|gb|EER94787.1| hypothetical protein SORBIDRAFT_01g034060 [Sorghum bicolor]
Length = 486
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/343 (32%), Positives = 182/343 (53%), Gaps = 56/343 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ DV AI + ++
Sbjct: 17 PSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGVNRNQAFVEFTDVNQAIAMVSYF 76
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVT+ + +T++V+H
Sbjct: 77 ASSSEPAQIRGKPVYIQYSNRQEIV----NNKSPGETAGNVLLVTMEGVQASDVTIDVIH 132
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS G+V KI TF+K+AGFQALIQY +A AR +L GR+I CC L
Sbjct: 133 MVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAARDALDGRSIPSYLLPEHVTSCC-L 191
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230
I FS +L + + + RSRD+ NP LP YS A
Sbjct: 192 RISFSAHQDLNIKFQSNRSRDYNNPYLPIN---------YS-----------------AM 225
Query: 231 GGGLPPGITGTNDR-----CTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKP 282
G L P + G + R VL++++ + + + D L +FS +G + +I + +N
Sbjct: 226 DGTLQP-VVGADGRKVEAQGNVLLASIENMQYAVTVDVLHTVFSSFGTVQKIAIFEKNGG 284
Query: 283 DHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 285 TQALIQYPDVNTAAVAKEALEGHCIYDGGYCKLHLSYSRHTDL 327
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A GR E +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY
Sbjct: 235 ADGRKVEAQGNVLLASIENMQYAVTVDVLHTVFSSFGTVQKIAIFEKNGGTQALIQYPDV 294
Query: 149 PSAVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNP 195
+A VA+ +L+G IYDG C+L + +S +L V + ++SRD+T P
Sbjct: 295 NTAAVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIP 342
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V + G IVNTK + QA V F QA
Sbjct: 11 FRYAQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGVNRNQAFVEFTDVNQAI 70
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A+V ASS + G + I +S Q I N
Sbjct: 71 -AMVSYFASSSEPAQIRGKPVYIQYSNRQEIVNN 103
>gi|341890178|gb|EGT46113.1| hypothetical protein CAEBREN_06779 [Caenorhabditis brenneri]
Length = 601
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/464 (24%), Positives = 203/464 (43%), Gaps = 61/464 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG + + AL++ +D+ A + F +
Sbjct: 31 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFAAS 90
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G+ +S+ Q + M + PN++L+VT+ + YPI +V++Q+ +
Sbjct: 91 NQINVGGQAALFNYSTSQCIERMGFESA----TPNKVLVVTVLNAQYPIDADVIYQISNA 146
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 147 QGKVLRVAVMHKPTIVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAKPDRVRVV 206
Query: 184 YNNERSRDFTNP-NLPAEQKGR----PSQSG--------YSEAGVAF------PQMANAA 224
++ RDFT P N + GR PS+ Y E + PQ
Sbjct: 207 RQDKDQRDFTLPDNEVPQDSGRKTLIPSRPDDHYYDRRPYEEERDPYDRRDYAPQPPPQP 266
Query: 225 AIAAAFGGGLPPGI------------------------TGTNDRCTVLVSNLNSDRIDED 260
G PP TG C ++V + +I+ D
Sbjct: 267 HYGYPPRGAGPPDYYHDRGPPPQSRYRDDYDDRGRMQPTGGGPGCVLMVYGIEHSKINCD 326
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE------- 313
+FN+ YGN++RI +R K + +++MG + + FL+G +FG +LE
Sbjct: 327 MMFNILCQYGNVLRISFMRTKVETGMIEMGTPDERHNVLDFLQGFSIFGLKLEFKPSHQE 386
Query: 314 -VNFSKHPN-ITQGADT-HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
V+F + P + G+ + +Y +S RF + PT ++H P + E
Sbjct: 387 CVHFLRDPFLLPDGSPSFKDYTSSRNQRFTTPELASKNRIIFPTHVLHWFNAPGTMDENA 446
Query: 371 IVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
++ L E + ++F ++ A FE+ E A E L
Sbjct: 447 LLDLLAEKTEHKPLKIEVFPSRNERSAAGTAEFESVEIANEVLA 490
>gi|386768309|ref|NP_001246425.1| smooth, isoform L [Drosophila melanogaster]
gi|383302597|gb|AFH08178.1| smooth, isoform L [Drosophila melanogaster]
Length = 492
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 178/389 (45%), Gaps = 55/389 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNPNLPAEQKGR---------- 204
+L G +IY GCC L I ++ ++L V Y NE S D+T + GR
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTVKEIGNGRSPLLQEPLYE 196
Query: 205 -----PSQS----GYSEAGVAFPQMANAAAIAAAFGGGLPPGIT------------GTND 243
P + G E P+ AAI P G+ G
Sbjct: 197 PPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQ 256
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 257 GAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLN 316
Query: 304 GALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCS 352
+ G ++++ FSK +++ EY S NRF A +
Sbjct: 317 NIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQP 376
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEAL 409
P+K++H P +TE++++ + + +LF + ++ + L+ F QA A+
Sbjct: 377 PSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAI 436
Query: 410 V-CKHASSLGGS-----IIRISFSQLQSI 432
+ C H G I+++ FS +S+
Sbjct: 437 MKCNHLPIEGKGTKFPFIMKLCFSSSKSM 465
>gi|386768313|ref|NP_001246427.1| smooth, isoform O [Drosophila melanogaster]
gi|383302599|gb|AFH08180.1| smooth, isoform O [Drosophila melanogaster]
Length = 494
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 178/391 (45%), Gaps = 57/391 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNP-----------NLPAEQKG 203
+L G +IY GCC L I ++ ++L V Y NE S D+T ++P
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEILPSKSLFSIPENVVM 196
Query: 204 RPSQSGYSEAGVAFPQMA------------NAAAIAAAFGGGLPPGIT------------ 239
SQ G AFP AAI P G+
Sbjct: 197 LESQPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQ 256
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 257 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 316
Query: 300 HFLKGALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 317 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 376
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 377 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 436
Query: 406 TEALV-CKHASSLGGS---IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 437 VLAIMKCNHLPIEGTKFPFIMKLCFSSSKSM 467
>gi|226481681|emb|CAX73738.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 518
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 220/463 (47%), Gaps = 60/463 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+H+R + E D++++FQP+G I + M+ KNQAL++ +D+ SA ++
Sbjct: 22 DPSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVAMMPQKNQALVEFEDISSAEELIK--- 78
Query: 63 NVQPTIR--GRNVYVQFSSHQELTTMEQNAQGRGDE------PNRILLVTIHHMLYPITV 114
+ P I+ V + FS+ + + N + DE N ILL TI+ PITV
Sbjct: 79 -INPAIKILSSPVQISFSTSKHIVQRAAN-RAPADEQNSLSTDNHILLFTIYDTDRPITV 136
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
E ++++ +G V +IV F+KS QA++++ A A+ L G +I+ GCC L + +
Sbjct: 137 ETIYRITFSYGNVLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGADIFPGCCTLKVDY 195
Query: 175 SNLDELQVNYNNERSRDFT----NPNLPAEQKGRPSQS---GY---SEAGVAFPQMANAA 224
+ L V N++ + DF +P+ +G Q+ GY S G +
Sbjct: 196 ARPARLTVPRNDQDNWDFEKCEYDPS--CNYQGDHCQNSLLGYMDDSHYGYDYHYGPYPY 253
Query: 225 AIAAAFG-------GGLPPG-----ITG-------TNDRCTVLVSNLNSDRIDEDKLFNL 265
+ +G +P G + G +N V++ N++ ++++ D++FN+
Sbjct: 254 DYSNDYGQPHPSECKNMPMGSHNMTLNGARNKSRNSNSTSVVMLYNIDMNKMNCDRIFNI 313
Query: 266 FSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 325
+YGN+IR+K LR+K A+V+MGD A + L G G +L + SK I
Sbjct: 314 LCIYGNVIRVKFLRSKEGSAMVEMGDADSATRLIRNLSGVSFMGNQLMIRNSKQDVILDV 373
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCS----------PTKMIHLSTLPQDVTEEEIVSHL 375
+ + + + + + + +N RY S P++ +H P ++ ++ +
Sbjct: 374 SSPFQLPDGSPSFKDFSKDRNNRYTTSIMAKKNRVYPPSRTLHYWNAPPKISNNALLELV 433
Query: 376 EEHGSIVNTKL--FEMNGKKQA--LVLFETEEQATEAL-VCKH 413
++ G+ + F K + + + T+ +A EAL +C H
Sbjct: 434 KKCGASEPQHIEQFSKTSDKSSSGFLKWATDTEAFEALALCNH 476
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ ++H+ LP+ E ++V + +G I + + M K QALV FE A E +
Sbjct: 23 PSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVAM--MPQKNQALVEFEDISSAEELIKIN 80
Query: 413 HASSLGGSIIRISFSQLQSI 432
A + S ++ISFS + I
Sbjct: 81 PAIKILSSPVQISFSTSKHI 100
>gi|226481683|emb|CAX73739.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 518
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 220/463 (47%), Gaps = 60/463 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+H+R + E D++++FQP+G I + M+ KNQAL++ +D+ SA ++
Sbjct: 22 DPSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVAMMPQKNQALVEFEDISSAEELIK--- 78
Query: 63 NVQPTIR--GRNVYVQFSSHQELTTMEQNAQGRGDE------PNRILLVTIHHMLYPITV 114
+ P I+ V + FS+ + + N + DE N ILL TI+ PITV
Sbjct: 79 -INPAIKILSSPVQISFSTSKHIVQRAAN-RAPADEQNSLSTDNHILLFTIYDTDRPITV 136
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
E ++++ +G V +IV F+KS QA++++ A A+ L G +I+ GCC L + +
Sbjct: 137 ETIYRITFSYGNVLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGADIFPGCCTLKVDY 195
Query: 175 SNLDELQVNYNNERSRDFT----NPNLPAEQKGRPSQS---GY---SEAGVAFPQMANAA 224
+ L V N++ + DF +P+ +G Q+ GY S G +
Sbjct: 196 ARPARLTVPRNDQDNWDFEKCEYDPS--CNYQGDHCQNSLLGYMDDSHYGYDYHYGPYPY 253
Query: 225 AIAAAFG-------GGLPPG-----ITG-------TNDRCTVLVSNLNSDRIDEDKLFNL 265
+ +G +P G + G +N V++ N++ ++++ D++FN+
Sbjct: 254 DYSNDYGQPHPSECKNMPMGPHNMTLNGARNKSRNSNSTSVVMLYNIDMNKMNCDRIFNI 313
Query: 266 FSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 325
+YGN+IR+K LR+K A+V+MGD A + L G G +L + SK I
Sbjct: 314 LCIYGNVIRVKFLRSKEGSAMVEMGDADSATRLIRNLSGVSFMGNQLMIRNSKQDVILDV 373
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCS----------PTKMIHLSTLPQDVTEEEIVSHL 375
+ + + + + + + +N RY S P++ +H P ++ ++ +
Sbjct: 374 SSPFQLPDGSPSFKDFSKDRNNRYTTSIMAKKNRVYPPSRTLHYWNAPPKISNNALLELV 433
Query: 376 EEHGSIVNTKL--FEMNGKKQA--LVLFETEEQATEAL-VCKH 413
++ G+ + F K + + + T+ +A EAL +C H
Sbjct: 434 KKCGASEPQHIEQFSKTSDKSSSGFLKWATDTEAFEALALCNH 476
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ ++H+ LP+ E ++V + +G I + + M K QALV FE A E +
Sbjct: 23 PSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVAM--MPQKNQALVEFEDISSAEELIKIN 80
Query: 413 HASSLGGSIIRISFSQLQSI 432
A + S ++ISFS + I
Sbjct: 81 PAIKILSSPVQISFSTSKHI 100
>gi|386768311|ref|NP_001246426.1| smooth, isoform M [Drosophila melanogaster]
gi|383302598|gb|AFH08179.1| smooth, isoform M [Drosophila melanogaster]
Length = 497
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 179/394 (45%), Gaps = 60/394 (15%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNPN---LPAEQKGRPSQSGYS 211
+L G +IY GCC L I ++ ++L V Y NE S D+T LP ++ G
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEILPIKEIGNGRSPLLQ 196
Query: 212 E---------AGVAFPQMA------------NAAAIAAAFGGGLPPGIT----------- 239
E G AFP AAI P G+
Sbjct: 197 EPLYEPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTP 256
Query: 240 -GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E
Sbjct: 257 QGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERC 316
Query: 299 VHFLKGALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNY 347
V L + G ++++ FSK +++ EY S NRF A +
Sbjct: 317 VQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASK 376
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQ 404
P+K++H P +TE++++ + + +LF + ++ + L+ F Q
Sbjct: 377 NRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQ 436
Query: 405 ATEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A A++ C H G I+++ FS +S+
Sbjct: 437 AVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 470
>gi|281350475|gb|EFB26059.1| hypothetical protein PANDA_013339 [Ailuropoda melanoleuca]
Length = 368
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 156/304 (51%), Gaps = 46/304 (15%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 78 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 137
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 138 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 192
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 193 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 251
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 252 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 311
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 312 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 364
Query: 272 IIRI 275
I ++
Sbjct: 365 IEKV 368
>gi|414881408|tpg|DAA58539.1| TPA: hypothetical protein ZEAMMB73_710436 [Zea mays]
Length = 560
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 167/332 (50%), Gaps = 46/332 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ + + +L++L PFG + TK + +NQA ++ D AI + +Y
Sbjct: 15 PSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFIEFGDQNQAIAMISYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY-PITVEVLH 118
++ +P +RG+NVY+Q+S+ QE+ + +G G+ +LLV + + ++++VLH
Sbjct: 75 ASSTEPAQVRGKNVYLQYSNRQEIVNNKATGEGSGN----VLLVGMEGVAPDSVSIDVLH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K++G+QALIQ+ +A A+++L GR I D C L
Sbjct: 131 VVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYLLPELDVACTLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S L V Y + RSRDFTNP LP + +A
Sbjct: 191 ITYSAHSVLNVKYQSHRSRDFTNPYLP--------------------------FLDSAKD 224
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDE-DKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
G P G + +L S N + D L +FS +G + +I + AL+Q
Sbjct: 225 GSGPDGKKQEAESNILLASIENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNGFQALIQYP 284
Query: 291 DGFQAELAVHFLKGALLFGK---RLEVNFSKH 319
D A A L+G ++ +L + FS+H
Sbjct: 285 DIQTAYAAKEALEGHSIYEGGYCKLHLTFSRH 316
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 133/277 (48%), Gaps = 44/277 (15%)
Query: 17 ISENDLLQLFQPFGVITKLVMLRAKN--QALLQMQDVPSAINA----------------L 58
+S + L +F FG + K+ + QAL+Q D +A +A L
Sbjct: 124 VSIDVLHVVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYLLPEL 183
Query: 59 QFYTNVQPTIRGRNVY-VQFSSHQE-------LTTMEQNAQGRGDEPNR------ILLVT 104
++ T +V V++ SH+ L ++ G G + + ILL +
Sbjct: 184 DVACTLRITYSAHSVLNVKYQSHRSRDFTNPYLPFLDSAKDGSGPDGKKQEAESNILLAS 243
Query: 105 IHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
I +M Y +T++VLH+VFS GFV+KI F+K+ GFQALIQY +A A+ +L+G +IY
Sbjct: 244 IENMQYVVTIDVLHEVFSAFGFVQKIAIFEKN-GFQALIQYPDIQTAYAAKEALEGHSIY 302
Query: 165 DGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSG---YSEAGVAFPQM 220
+G C+L + FS EL V NNER RD+T N +PS G G A P
Sbjct: 303 EGGYCKLHLTFSRHTELNVKVNNERGRDYTKGNA-TPSSDQPSILGPQPIPSVGAAIPP- 360
Query: 221 ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRI 257
A + +AA +PPG D L SN +S+ +
Sbjct: 361 AQGSVPSAATNSVMPPG-----DPSVALPSNPSSEPL 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP D T EE+V G +VNTK + QA + F + QA
Sbjct: 9 FRYTQPPSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFIEFGDQNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A++ +ASS + G + + +S Q I N
Sbjct: 69 -AMISYYASSTEPAQVRGKNVYLQYSNRQEIVNN 101
>gi|350854988|emb|CAZ32696.2| heterogeneous nuclear ribonucleoprotein l (hnrnp l), putative
[Schistosoma mansoni]
Length = 522
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 209/460 (45%), Gaps = 53/460 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVR + E D+++ F+ +G I + M+ K QAL++ +D+ SA ++
Sbjct: 22 DPSPVVHVRGLPRHSVEFDVVKAFESYGRIRDVTMMPQKKQALVEFEDISSAEALIE--R 79
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQN-----AQGRGDEPNRILLVTIHHMLYPITVEVL 117
N + I V + FS+ + + N Q N ILL TI+ PITVE +
Sbjct: 80 NPEVKILNSLVQISFSTSKHIVQRAANRVPTDEQSSLSADNHILLFTIYDTDRPITVETI 139
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
+++ +G V +IV F+KS QA++++ A A+ L G +I+ GCC L + ++
Sbjct: 140 YRITFSYGSVLRIVIFRKSQ-VQAMVEFGSVQEARNAKLHLNGADIFPGCCTLKVDYARP 198
Query: 178 DELQVNYNNERSRDFT----NPNLPAEQKGRPSQS--GYSEAG---VAFPQMANAAAIAA 228
L V N++ + DF +P Q G S GY + G P +
Sbjct: 199 ARLSVPRNDQDNWDFEKCERDP-FCNFQDGHYQNSLLGYMDEGHYDYEHPYGQYPYENSN 257
Query: 229 AFGGGLP-------------PGITGTNDR-------CTVLVSNLNSDRIDEDKLFNLFSL 268
+G P P + G +R V++ N++ +++ D++FN+ +
Sbjct: 258 DYGHPYPSESKNIPVGPHNIPALNGAQNRNRNSNSTAVVMLYNIDMKKMNCDRVFNILCI 317
Query: 269 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADT 328
YGN+IR+K LR K A+V+MGD A + L G G +L V SK I +
Sbjct: 318 YGNVIRVKFLRTKEGSAMVEMGDVESATRLIRNLSGVSFMGNQLMVRTSKQDVILDVSSP 377
Query: 329 HEYMNSNLNRFNRNAAKNYRYCCS----------PTKMIHLSTLPQDVTEEEIVSHLEEH 378
+ + + + + + +N RY + P++ +H P ++ E++ + +
Sbjct: 378 FQLPDGSPSFKDYSKDRNNRYTTAIMAKKNRIHPPSRTLHYWNAPPKISNNELLEFVRKC 437
Query: 379 GSIVNTKLFEM----NGKKQALVLFETEEQATEAL-VCKH 413
G+ ++ + + + + T+ +A EAL +C H
Sbjct: 438 GAPEPQRIEQFSKASDKSSSGFIKWTTDAEACEALALCNH 477
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ ++H+ LP+ E ++V E +G I + + M KKQALV FE A EAL+ +
Sbjct: 23 PSPVVHVRGLPRHSVEFDVVKAFESYGRIRDVTM--MPQKKQALVEFEDISSA-EALIER 79
Query: 413 HAS-SLGGSIIRISFSQLQSI 432
+ + S+++ISFS + I
Sbjct: 80 NPEVKILNSLVQISFSTSKHI 100
>gi|54290862|dbj|BAD61523.1| polypyrimidine tract-binding protein 1-like [Oryza sativa Japonica
Group]
gi|125571201|gb|EAZ12716.1| hypothetical protein OsJ_02633 [Oryza sativa Japonica Group]
gi|215740848|dbj|BAG97004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 172/333 (51%), Gaps = 47/333 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKVIH+RN+ + +E +L++L PFG + TK + +NQA ++ D AI + ++
Sbjct: 14 PSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFADQNQAIAMISYF 73
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY-PITVEVLH 118
++ +P +RG+NVY+Q+S+ QE+ N++ G+ +LLV++ +L ++++VLH
Sbjct: 74 ASSAEPAQVRGKNVYLQYSNRQEIV----NSKSSGEAAGNVLLVSMEGVLPDAVSIDVLH 129
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV+KI TF+K++G+QALIQ+ +A A+++L GR I D C L
Sbjct: 130 LVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLR 189
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S L V + + RSRD+TNP LP +A
Sbjct: 190 INYSAHTVLNVKFQSHRSRDYTNPYLP--------------------------VAPSAID 223
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDE-DKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
G P G + +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 224 GSGPDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQY 283
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKH 319
D A A L+G ++ +L + FS+H
Sbjct: 284 PDIQTAVAAKEALEGHSIYEGGYCKLHLTFSRH 316
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 125/257 (48%), Gaps = 47/257 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLRAKN--QALLQMQDVPSAINA------------LQFYTNVQ 65
D+L L F FG + K+ + QAL+Q D +A +A L +V
Sbjct: 126 DVLHLVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVP 185
Query: 66 PTIR----GRNVY-VQFSSHQE-------LTTMEQNAQGRGDEPNR------ILLVTIHH 107
T+R V V+F SH+ L G G + + +LL ++ +
Sbjct: 186 CTLRINYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSGPDGKKQEAESNVLLASVEN 245
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
M Y +T++VLH+VFS GFV+KI F+K++GFQALIQY +AV A+ +L+G +IY+G
Sbjct: 246 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGG 305
Query: 168 -CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----QSGYSEAGVAFPQMAN 222
C+L + FS +L V NNER RD+T N A +PS Q YS A P A
Sbjct: 306 YCKLHLTFSRHTDLNVKVNNERGRDYTGGNT-APTSNQPSILGPQPVYSGAYNNAPSSAT 364
Query: 223 AAAIAAAFGGGLPPGIT 239
A + PPG T
Sbjct: 365 GAVV--------PPGTT 373
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K+IHL LP D TEEE+V G +VNTK + QA V F + QA
Sbjct: 8 FRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFADQNQAI 67
Query: 407 EALVCKHASSLGGSIIR 423
A++ ASS + +R
Sbjct: 68 -AMISYFASSAEPAQVR 83
>gi|256080379|ref|XP_002576459.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 597
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 209/460 (45%), Gaps = 53/460 (11%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVR + E D+++ F+ +G I + M+ K QAL++ +D+ SA ++
Sbjct: 97 DPSPVVHVRGLPRHSVEFDVVKAFESYGRIRDVTMMPQKKQALVEFEDISSAEALIE--R 154
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQN-----AQGRGDEPNRILLVTIHHMLYPITVEVL 117
N + I V + FS+ + + N Q N ILL TI+ PITVE +
Sbjct: 155 NPEVKILNSLVQISFSTSKHIVQRAANRVPTDEQSSLSADNHILLFTIYDTDRPITVETI 214
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
+++ +G V +IV F+KS QA++++ A A+ L G +I+ GCC L + ++
Sbjct: 215 YRITFSYGSVLRIVIFRKSQ-VQAMVEFGSVQEARNAKLHLNGADIFPGCCTLKVDYARP 273
Query: 178 DELQVNYNNERSRDFT----NPNLPAEQKGRPSQS--GYSEAG---VAFPQMANAAAIAA 228
L V N++ + DF +P Q G S GY + G P +
Sbjct: 274 ARLSVPRNDQDNWDFEKCERDP-FCNFQDGHYQNSLLGYMDEGHYDYEHPYGQYPYENSN 332
Query: 229 AFGGGLP-------------PGITGTNDR-------CTVLVSNLNSDRIDEDKLFNLFSL 268
+G P P + G +R V++ N++ +++ D++FN+ +
Sbjct: 333 DYGHPYPSESKNIPVGPHNIPALNGAQNRNRNSNSTAVVMLYNIDMKKMNCDRVFNILCI 392
Query: 269 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADT 328
YGN+IR+K LR K A+V+MGD A + L G G +L V SK I +
Sbjct: 393 YGNVIRVKFLRTKEGSAMVEMGDVESATRLIRNLSGVSFMGNQLMVRTSKQDVILDVSSP 452
Query: 329 HEYMNSNLNRFNRNAAKNYRYCCS----------PTKMIHLSTLPQDVTEEEIVSHLEEH 378
+ + + + + + +N RY + P++ +H P ++ E++ + +
Sbjct: 453 FQLPDGSPSFKDYSKDRNNRYTTAIMAKKNRIHPPSRTLHYWNAPPKISNNELLEFVRKC 512
Query: 379 GSIVNTKLFEM----NGKKQALVLFETEEQATEAL-VCKH 413
G+ ++ + + + + T+ +A EAL +C H
Sbjct: 513 GAPEPQRIEQFSKASDKSSSGFIKWTTDAEACEALALCNH 552
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ ++H+ LP+ E ++V E +G I + + M KKQALV FE A EAL+ +
Sbjct: 98 PSPVVHVRGLPRHSVEFDVVKAFESYGRIRDVTM--MPQKKQALVEFEDISSA-EALIER 154
Query: 413 HAS-SLGGSIIRISFSQLQSI 432
+ + S+++ISFS + I
Sbjct: 155 NPEVKILNSLVQISFSTSKHI 175
>gi|108708435|gb|ABF96230.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
Length = 300
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 18/208 (8%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L PFG I TK + +NQA ++ D+ AI+ + ++
Sbjct: 19 PSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAISMVSYF 78
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 79 ASSSEPAQIRGKTVYIQYSNRQEIV----NNKSPGETAGNVLLVTIEGVQANDVTIDVIH 134
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS GFV KI TF+K+AGFQALIQY +A AR +L GR+I CC L
Sbjct: 135 LVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCC-L 193
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLP 198
I FS +L + + + RSRD+TNP LP
Sbjct: 194 RISFSAHKDLNIKFQSHRSRDYTNPYLP 221
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
A GR E +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY
Sbjct: 236 ADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQY 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V G IVNTK + QA V F QA
Sbjct: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 73 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNN 105
>gi|255584813|ref|XP_002533124.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223527087|gb|EEF29269.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 483
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 52/342 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ D+ AI + +Y
Sbjct: 15 PSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAIQMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-GCCQLDIQFS-- 175
VFS GFV KI TF+K+AGFQALIQ+ +A AR++L GR+I L++ S
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPKYSFFSLNLHLSLN 190
Query: 176 ------------NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANA 223
+LD+LQ RD+TNP LP N
Sbjct: 191 SALLYSRFTQSKSLDDLQFLICLLNFRDYTNPYLP----------------------VNP 228
Query: 224 AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RN 280
AI + P VL++++ + + + D + +FS +G + +I + +N
Sbjct: 229 TAIEGPVQPAVGPDGKKKEPESNVLLASIENMQYAVTVDVIHTVFSAFGTVQKIAIFEKN 288
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKH 319
ALVQ D A +A L+G ++ +L +++S+H
Sbjct: 289 GGTQALVQYPDVATAAVAKETLEGHCIYDGGYCKLHLSYSRH 330
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 125/269 (46%), Gaps = 56/269 (20%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDV---PSAINALQ---------FYTNVQ 65
D++ L F FG + K+ A QAL+Q D SA NAL F N+
Sbjct: 127 DVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPKYSFFSLNLH 186
Query: 66 PTIRGRNVYVQFSSHQEL------------------------TTMEQNAQ------GRGD 95
++ +Y +F+ + L T +E Q G+
Sbjct: 187 LSLNSALLYSRFTQSKSLDDLQFLICLLNFRDYTNPYLPVNPTAIEGPVQPAVGPDGKKK 246
Query: 96 EP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
EP + +LL +I +M Y +TV+V+H VFS G V+KI F+K+ G QAL+QY +A VA
Sbjct: 247 EPESNVLLASIENMQYAVTVDVIHTVFSAFGTVQKIAIFEKNGGTQALVQYPDVATAAVA 306
Query: 155 RSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR-------PS 206
+ +L+G IYDG C+L + +S +L V +++SRD+T P+ G+ P+
Sbjct: 307 KETLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDASLLAAGQVPGVPTAPT 366
Query: 207 QSGYSEAGVAFP--QMANAAAIAAAFGGG 233
+A +P A+AAA+ A G
Sbjct: 367 MWQNPQASPMYPVNSYASAAAVTAQVPAG 395
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + TEEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ +V +ASS + G + I +S I N
Sbjct: 69 Q-MVSYYASSSEPAQVRGKTVYIQYSNRHEIVNN 101
>gi|226467722|emb|CAX69737.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 562
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 220/463 (47%), Gaps = 60/463 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+H+R + E D++++FQP+G I + M+ KNQAL++ +D+ SA ++
Sbjct: 22 DPSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVAMMPQKNQALVEFEDISSAEELIK--- 78
Query: 63 NVQPTIR--GRNVYVQFSSHQELTTMEQNAQGRGDE------PNRILLVTIHHMLYPITV 114
+ P I+ V + FS+ + + N + DE N ILL TI+ PITV
Sbjct: 79 -INPAIKILSSPVQISFSTSKHIVQRAAN-RAPADEQNSLSTDNHILLFTIYDTDRPITV 136
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
E ++++ +G V +IV F+KS QA++++ A A+ L G +I+ GCC L + +
Sbjct: 137 ETIYRITFSYGNVLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGADIFPGCCTLKVDY 195
Query: 175 SNLDELQVNYNNERSRDFT----NPNLPAEQKGRPSQS---GY---SEAGVAFPQMANAA 224
+ L V N++ + DF +P+ +G Q+ GY S G +
Sbjct: 196 ARPARLTVPRNDQDNWDFEKCEYDPS--CNYQGDHCQNSLLGYMDDSHYGYDYHYGPYPY 253
Query: 225 AIAAAFG-------GGLPPG-----ITG-------TNDRCTVLVSNLNSDRIDEDKLFNL 265
+ +G +P G + G +N V++ N++ ++++ D++FN+
Sbjct: 254 DYSNDYGQPHPSECKNMPMGPHNMTLNGARNKSRNSNSTSVVMLYNIDMNKMNCDRIFNI 313
Query: 266 FSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 325
+YGN+IR+K L +K A+V+MGD A + L G G +L + SK I
Sbjct: 314 LCIYGNVIRVKFLLSKEGSAMVEMGDADSATRLIRNLSGVSFMGNQLMIRNSKQDVILDV 373
Query: 326 ADTHEYMNSNLNRFNRNAAKNYRYCCS----------PTKMIHLSTLPQDVTEEEIVSHL 375
+ + + + + + + +N RY S P++ +H P ++ ++ +
Sbjct: 374 SSPFQLPDGSPSFKDFSKDRNNRYTTSIMAKKNRVYPPSRTLHYWNAPPKISNNALLELV 433
Query: 376 EEHGSIV--NTKLFEMNGKKQA--LVLFETEEQATEAL-VCKH 413
++ G+ + + F K + + + T+ +A EAL +C H
Sbjct: 434 KKCGASEPQHIEQFSKTSDKSSSGFLKWATDTEAFEALALCNH 476
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+ ++H+ LP+ E ++V + +G I + + M K QALV FE A E +
Sbjct: 23 PSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVAM--MPQKNQALVEFEDISSAEELIKIN 80
Query: 413 HASSLGGSIIRISFSQLQSI 432
A + S ++ISFS + I
Sbjct: 81 PAIKILSSPVQISFSTSKHI 100
>gi|386768329|ref|NP_001246434.1| smooth, isoform AA [Drosophila melanogaster]
gi|383302607|gb|AFH08187.1| smooth, isoform AA [Drosophila melanogaster]
Length = 508
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 76/410 (18%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 74 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 132
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNPN---LPAEQKGR------- 204
+L G +IY GCC L I ++ ++L V Y NE S D+T LP ++ G
Sbjct: 133 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEILPIKEIGNGRSPLLQ 191
Query: 205 ------------------PSQSGYSEAGVAFPQMA------------NAAAIAAAFGGGL 234
SQ G AFP AAI
Sbjct: 192 EPLYGKSLFSIPENVVMLESQPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKE 251
Query: 235 PPGIT------------GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 282
P G+ G ++V L+ D + DKLFNL LYGN+ RIK L+ K
Sbjct: 252 PAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKE 311
Query: 283 DHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSKHPNITQ----------GADTHEY 331
A+VQMGD E V L + G ++++ FSK +++ EY
Sbjct: 312 GTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEY 371
Query: 332 MNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMN 390
S NRF A + P+K++H P +TE++++ + + +LF +
Sbjct: 372 TGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLK 431
Query: 391 GKKQA--LVLFETEEQATEALV-CKHASSLGGS-----IIRISFSQLQSI 432
++ + L+ F QA A++ C H G I+++ FS +S+
Sbjct: 432 TERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 481
>gi|386768319|ref|NP_001246429.1| smooth, isoform U [Drosophila melanogaster]
gi|383302602|gb|AFH08182.1| smooth, isoform U [Drosophila melanogaster]
Length = 515
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 182/417 (43%), Gaps = 83/417 (19%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 74 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 132
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNPN---LPAEQKG-------- 203
+L G +IY GCC L I ++ ++L V Y NE S D+T LP ++ G
Sbjct: 133 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEILPIKEIGNGRSPLLQ 191
Query: 204 ------RP------------------SQSGYSEAGVAFPQMA------------NAAAIA 227
RP SQ G AFP AAI
Sbjct: 192 EPLYGTRPQPYSKSLFSIPENVVMLESQPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIH 251
Query: 228 AAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI 275
P G+ G ++V L+ D + DKLFNL LYGN+ RI
Sbjct: 252 PTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARI 311
Query: 276 KLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSKHPNITQ---------- 324
K L+ K A+VQMGD E V L + G ++++ FSK +++
Sbjct: 312 KFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDH 371
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVN 383
EY S NRF A + P+K++H P +TE++++ + +
Sbjct: 372 SPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATS 431
Query: 384 TKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS-----IIRISFSQLQSI 432
+LF + ++ + L+ F QA A++ C H G I+++ FS +S+
Sbjct: 432 VRLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 488
>gi|332027757|gb|EGI67824.1| Polypyrimidine tract-binding protein 2 [Acromyrmex echinatior]
Length = 308
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 142/305 (46%), Gaps = 53/305 (17%)
Query: 177 LDELQVNYNNERSRDFTNPNLP-----------------------AEQKGRPSQSGYSEA 213
+ L V YNN++SRD+TNPNLP ++ + R +S
Sbjct: 1 MQNLNVKYNNDKSRDYTNPNLPTGDASLDAASLALGGELLLMGAGSQPRARIPESIAGAP 60
Query: 214 GV---AFPQMANAAAIAAAFGG------------------GLPPGITGTNDRCTVL-VSN 251
GV F A+ +A + G GL + G+ VL VSN
Sbjct: 61 GVLPTPFAMHGLASPLAGPYNGVPPAGGLAGLGGFPLGAAGLGVRVQGSAQASAVLLVSN 120
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
LN + + D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ + +FGK+
Sbjct: 121 LNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQALLALTHMDKLRVFGKQ 180
Query: 312 LEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 364
++V SKH + T +Y NS L+RF + +KNY+ P+ +HLS +P
Sbjct: 181 IKVMLSKHQTVQLPKEGQPDAGLTKDYTNSTLHRFKKPGSKNYQNIYPPSSTLHLSNIPA 240
Query: 365 DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIR 423
V EEEI ++G V F +K AL+ + A AL+ H L S +R
Sbjct: 241 TVAEEEIKDAFTKNGFTVKAFKFFPKDRKMALIQMPNMDDAVAALIKMHNYQLSESNHLR 300
Query: 424 ISFSQ 428
+SFS+
Sbjct: 301 VSFSK 305
>gi|307196190|gb|EFN77847.1| Polypyrimidine tract-binding protein 2 [Harpegnathos saltator]
Length = 312
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 139/310 (44%), Gaps = 59/310 (19%)
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAA----------- 225
+ L V YNN++SRD+TNPNLP + S + G PQ+ A
Sbjct: 1 MQNLNVKYNNDKSRDYTNPNLPTGDANLDAAS-IALGGELLPQLLMGAGSQPRARIPESI 59
Query: 226 --------------------IAAAFGG-----------GLPPGITGTNDR--------CT 246
+A + G G P G G R
Sbjct: 60 AGAPSVLPTPFAAMHGLPSPLAGPYNGVPPAGGLAGLSGFPIGAAGLGVRVQSSGQASAV 119
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNLN + + D LF LF +YG++ R+K+L NK D AL+QM + QA LA+ +
Sbjct: 120 LLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQALLALTHMDKLR 179
Query: 307 LFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+FGK+++V SKH + T +Y NS L+RF + +KNY+ P+ +HL
Sbjct: 180 VFGKQIKVMLSKHQTVQLPKEGQPDAGLTKDYTNSTLHRFKKPGSKNYQNIYPPSATLHL 239
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
S +P V EEEI ++G V F +K AL+ + A AL+ H L
Sbjct: 240 SNIPATVAEEEIKDAFTKNGFTVKAFKFFPKDRKMALIQMPNMDDAVAALIKMHNYQLSE 299
Query: 420 S-IIRISFSQ 428
S +R+SFS+
Sbjct: 300 SNHLRVSFSK 309
>gi|442624264|ref|NP_001261093.1| smooth, isoform AB [Drosophila melanogaster]
gi|440214533|gb|AGB93625.1| smooth, isoform AB [Drosophila melanogaster]
Length = 509
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 181/406 (44%), Gaps = 72/406 (17%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNP------------NLPAEQK 202
+L G +IY GCC L I ++ ++L V Y NE S D+T + AE++
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEMQSTVVVALDDAAEER 196
Query: 203 GRPSQSGYSE------------AGVAFPQMA------------NAAAIAAAFGGGLPPGI 238
++ + G AFP AAI P G+
Sbjct: 197 AEKWENSTEKRILWMLQPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGV 256
Query: 239 T------------GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 286
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+
Sbjct: 257 VPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAM 316
Query: 287 VQMGDGFQAELAVHFLKGALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSN 335
VQMGD E V L + G ++++ FSK +++ EY S
Sbjct: 317 VQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSK 376
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQ 394
NRF A + P+K++H P +TE++++ + + +LF + ++
Sbjct: 377 NNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERS 436
Query: 395 A--LVLFETEEQATEALV-CKHASSLGGS-----IIRISFSQLQSI 432
+ L+ F QA A++ C H G I+++ FS +S+
Sbjct: 437 SSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 482
>gi|357517435|ref|XP_003629006.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355523028|gb|AET03482.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 90
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 79/121 (65%), Gaps = 34/121 (28%)
Query: 306 LLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD 365
+LFGK LEVNFSKHPNIT GADTHEYMNS+LNRFN N AKNY+YCCSPTK+IH+
Sbjct: 1 MLFGKHLEVNFSKHPNITPGADTHEYMNSSLNRFNYNVAKNYQYCCSPTKIIHM------ 54
Query: 366 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425
ALV FE+EE+ATEALVC+HA+SL G +IRIS
Sbjct: 55 ----------------------------YALVQFESEEEATEALVCRHANSLSGFMIRIS 86
Query: 426 F 426
F
Sbjct: 87 F 87
>gi|345494580|ref|XP_001604099.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Nasonia
vitripennis]
Length = 520
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 192/467 (41%), Gaps = 128/467 (27%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRP----- 149
++PN +LL TI + +YPITVEVLH + G V++IV F+K+ G QA+++Y L
Sbjct: 30 NKPNHVLLFTIINPVYPITVEVLHAISHQSGTVQRIVIFKKN-GVQAMVEYPLHTAILLF 88
Query: 150 -----------------------------------SAVVARSSLQGRNIYDGCCQLDIQF 174
SA A+ +L G +IY GCC L I +
Sbjct: 89 VVFFFFLFNCMLISITTSYPKSLTEFFEITFDSVESATRAKEALHGADIYSGCCTLKIDY 148
Query: 175 SNLDELQVNYNNERSRDFTNPNLPA-------EQKGRPSQ---------------SGYSE 212
+ +L V N+ S D+T P + A GRP+ S
Sbjct: 149 AKPTKLNVYKNDSESWDYTTPAIGAGSHKNDTSGNGRPAPLLAEPRYGAAPQPYGSSVPA 208
Query: 213 AGVAF-----------------PQMANA----------AAIAAAFGGGLP-------PGI 238
GV F P A A A F G P PG
Sbjct: 209 GGVQFGATGAGAHDRYEDTFSGPPGAYAEPYVERYGLKTAAGPEFPGREPLHPTPPRPGY 268
Query: 239 TG--------TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
++ ++V L SD+++ DKLFNLF LYGN+ ++K L+ K A++QMG
Sbjct: 269 VAALGQAPATSSQGSVMMVYGLQSDKVNTDKLFNLFCLYGNVSKVKFLKTKEGCAMIQMG 328
Query: 291 DGFQAELAVHFLKGALLF-GKRLEVNFSKHPNITQGADTH----------EYMNSNLNRF 339
DG E + L + +L++ FSK ++ + + ++ S NRF
Sbjct: 329 DGIAVERCLQNLNNVTIGQDGKLQLGFSKQAFLSDVTNPYVLPDKTPSFKDFTGSKNNRF 388
Query: 340 NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA-- 395
A N P+K++H P D+TEE + E G KLF + ++ +
Sbjct: 389 LNPAMANKNRIQPPSKIVHFFNTPPDLTEETVNRVFVEAGIEPPTTIKLFPLKSERSSSG 448
Query: 396 LVLFETEEQATEALV-CKHASSLGGS------IIRISFSQLQSIREN 435
L+ F + A EA++ C H ++L S I+++ FS ++I N
Sbjct: 449 LIEFSSVGVAVEAIMECNH-TALDNSNGKFPYIMKLCFSSSRTIPSN 494
>gi|26351857|dbj|BAC39565.1| unnamed protein product [Mus musculus]
Length = 329
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 124/209 (59%), Gaps = 7/209 (3%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 64 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 123
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 124 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 181
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 182 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 240
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGY 210
V N++ + D+TNPNL G+ + GY
Sbjct: 241 VFKNDQDTWDYTNPNL----SGQGNPDGY 265
>gi|320165836|gb|EFW42735.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 455
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 187/427 (43%), Gaps = 53/427 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+HVR + IS L G V++ ++M+ K+QAL++M V A+ +
Sbjct: 42 PSRVLHVRKLPDGISSPQLSSAISELGGVVSFVIMMPQKHQALIEMVSVSDAMTVIAHCA 101
Query: 63 NVQPTIRGRNVYVQFSSHQEL--TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
++G+ + +S QEL T+ EQ +G P +ILL T+ + +YPIT EV H
Sbjct: 102 QHPVYLQGQQIMFNYSKSQELKRTSGEQPDEG---NPAKILLFTVFNPIYPITCEVSHTS 158
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
S + V + + + + L + + AR ++ G +IY GCC L I +S L
Sbjct: 159 PSAYRLVSQARPLPQRRASRRWLSLTLLRTTLAARRAINGADIYGGCCTLKIDYSAHHHL 218
Query: 181 QVNYNNERSRDFTNPNLPAEQKG------------------RPSQSGYSEAGVAFPQMAN 222
++R RD P G + GY P N
Sbjct: 219 S---QDDRGRDNRGPPPSGVYDGGRHYGGPPPGQLPPPHHYDGGRGGYDMG--PPPHHYN 273
Query: 223 AAAIAAAFGGGLPPGITGTN----DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 278
++ + G PP N +++ ++N R+ LFNLF LYGN++R+++L
Sbjct: 274 PSSPDSR---GPPPQFASNNGPQGSSPVLMIYHINPQRMTCQSLFNLFCLYGNVLRVRIL 330
Query: 279 RNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTH--------- 329
N+ D AL+Q A+ A+ L A++FG LEV S++ I A
Sbjct: 331 ANRTDAALLQFDQAHAADTALANLNRAVIFGTSLEVTHSRNTYIAGAATAPIPGSPATLV 390
Query: 330 EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS-----HLEEHGSIVNT 384
++ +S NRF A PT+ +H L TEE I S +EE SI
Sbjct: 391 DFSDSPHNRFTNQRAAMKNRISPPTRNVHFFGLGVGATEEHIRSIFTPAGIEEPESI--- 447
Query: 385 KLFEMNG 391
KLFE G
Sbjct: 448 KLFEKGG 454
>gi|355694928|gb|AER99833.1| heteroproteinous nuclear ribonucleoprotein L [Mustela putorius
furo]
Length = 249
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 120/199 (60%), Gaps = 3/199 (1%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 54 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 113
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 114 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 171
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 172 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 230
Query: 182 VNYNNERSRDFTNPNLPAE 200
V N++ + D+TNPNL +
Sbjct: 231 VFKNDQDTWDYTNPNLSGQ 249
>gi|402890608|ref|XP_003908575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Papio anubis]
Length = 403
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 183/421 (43%), Gaps = 94/421 (22%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+M+ K QAL++ +++ SA + F + I G+ + +S+ + +T G D
Sbjct: 1 MMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITR-----PGNTD 55
Query: 96 EP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA++
Sbjct: 56 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMV--------- 105
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ----- 207
D L V N+ S D+T P L +G+ Q
Sbjct: 106 -------------------------DRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAIL 140
Query: 208 ---------SGYSEAGVAFP-----QMAN-----------AAAIAAAFGGGLPPGITGTN 242
GY G P +M + A ++ GG P G
Sbjct: 141 GEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG----- 195
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD + E AV L
Sbjct: 196 --SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 253
Query: 303 KGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSP 353
LFGKRL V SK ++ G ++ ++ S NRF + P
Sbjct: 254 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 313
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEA 408
+ ++H +P VTEE +H + K + K A L+ +E + A EA
Sbjct: 314 SCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEA 373
Query: 409 L 409
L
Sbjct: 374 L 374
>gi|405962643|gb|EKC28300.1| Heterogeneous nuclear ribonucleoprotein L [Crassostrea gigas]
Length = 551
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + I E DL + Q FG ++ +V++ K+QAL++ +D+ A N + +
Sbjct: 27 PSPVVHVRGLYDNIMERDLTRAVQQFGNVSCVVLMPKKHQALIEFEDISGATNCVNYSNE 86
Query: 64 VQPTIRGRNVYVQFSSHQELT---TMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
Q + G+ Y +S+ Q + E+N Q N ILL TI + YP+TV+++H +
Sbjct: 87 NQIFVAGQPAYFNYSTSQRIQRPGPKEENKQT-----NHILLFTILNPQYPVTVDIMHTI 141
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
SP+G V +IV F+KS G Q+++++ SA A+ +L G +IY C L I+++ D+L
Sbjct: 142 CSPYGQVVRIVIFRKS-GMQSMVEFDDVESAKRAKQALNGADIYSDCNTLKIEYAKTDKL 200
Query: 181 QVNYNNERSRDFTNPNLPAE 200
V N++ S D+TNPNL +E
Sbjct: 201 NVFKNDQSSWDYTNPNLNSE 220
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 233 GLPPG--ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
G PPG I G ++V LN + ++ D+LFN+F LYGN+ R+K L++K A++QMG
Sbjct: 332 GGPPGAMIQGA----VLMVYGLNPEHVNCDRLFNVFCLYGNVARVKFLKSKEGSAMIQMG 387
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKH------PNITQGADT----HEYMNSNLNRFN 340
D E ++ L LFG +L + SK PN + D ++M S NR+
Sbjct: 388 DSLAVERSIQNLSHVTLFGSKLTLAVSKQAFLQDVPNPYELPDGTPSFKDFMGSRNNRYA 447
Query: 341 RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQAL 396
+ +PTK++H +P +++E+ + G+ K+ + L
Sbjct: 448 NPEQASKNRIMAPTKVLHYFNVPPELSEKVLEEVFTNMGAECPEKIKQFPATSARSSSGL 507
Query: 397 VLFETEEQATEAL-VCKHAS 415
V F+ E+A AL + HAS
Sbjct: 508 VQFKDTEEAVNALALANHAS 527
>gi|78101308|pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
gi|88192784|pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 9/201 (4%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA
Sbjct: 27 PGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQA 85
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYR 348
+LA+ L G L GK + + SKH N+ +G + T +Y NS L+RF + +KN++
Sbjct: 86 QLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQ 145
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +A
Sbjct: 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQA 205
Query: 409 LVCKHASSLG-GSIIRISFSQ 428
L+ H LG +R+SFS+
Sbjct: 206 LIDLHNHDLGENHHLRVSFSK 226
>gi|4929470|gb|AAD34009.1|AF148690_1 RNA-binding protein XlhnRNPL [Xenopus laevis]
Length = 273
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL + Q FG I+ +V++ K QAL++ +D+ A NA+ + +
Sbjct: 50 SPVVHVRGLIDGVVEPDLAEALQEFGTISYVVVMPKKRQALVEFEDINGACNAVNYAADN 109
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNA-QGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G +V +S+ Q+++ A RG N +LL+TI + +Y IT +VL+ + +P
Sbjct: 110 QIYVAGHPAFVNYSTSQKISRPTDTADDSRG--VNNVLLLTILNPIYSITTDVLYTICNP 167
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G VE+IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V
Sbjct: 168 CGPVERIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPSRLNVF 226
Query: 184 YNNERSRDFTNPNL 197
N++ + D+TNP L
Sbjct: 227 KNDQDTWDYTNPCL 240
>gi|324510343|gb|ADY44324.1| Heterogeneous nuclear ribonucleoprotein L [Ascaris suum]
Length = 400
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 167/369 (45%), Gaps = 52/369 (14%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+ +R+L++T++++ PI + V+ Q+ +P+G V++I + G QAL+++ A A
Sbjct: 23 EHASRVLILTVYNVCQPIDINVIFQICAPYGVVKRIAMLHR-FGVQALVEFDDMQMAKNA 81
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ + G +IY GCC L ++F+ D + V N D+T +G +
Sbjct: 82 KRGINGADIYHGCCTLKVEFAKPDHVNVTANTSMQWDYT--------------TGLTPGF 127
Query: 215 VAFPQMANAAAIAAAFGG------------GLPPGITGTN-----DRCTVLVSNLNSDRI 257
+ +P + AA+ G G+ P + TN D C V++ +
Sbjct: 128 IDYPHTIQQSLAAASKGTFSLPTQPGVAHYGMAPCLNNTNSGLARDGCVVVIHGAHQSSF 187
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
DK+FNL LYGN RIK +++KP+ +VQMG +A V L G LFG L +
Sbjct: 188 SCDKIFNLLCLYGNCYRIKFMKSKPNVCMVQMGSASEACAVVENLNGVTLFGYTLSLRQC 247
Query: 318 KHPNITQ---------GADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
+ I + G+ ++ +Y +S +RF A P ++ P ++
Sbjct: 248 SYDVIHEIPEPLPLPDGSPSYRDYSSSRNHRFTSAARAGRNKIVKPGPALYWFNAPSTIS 307
Query: 368 EEEIVSHLEEHGSIVN--TKLFEMNGKKQA--LVLFETEEQATEALVCKHASSLGGS--- 420
EE + + V ++F + + + + FET E++ EAL + +++G S
Sbjct: 308 EETMKQLFVNKSAPVPHVVRIFPLKSDRSSNGICEFETTERSVEALALANHATVGPSDAK 367
Query: 421 ---IIRISF 426
+R SF
Sbjct: 368 TLYTVRFSF 376
>gi|194391004|dbj|BAG60620.1| unnamed protein product [Homo sapiens]
Length = 240
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ + +
Sbjct: 29 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 88
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPH 124
Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ + +P
Sbjct: 89 QIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTICNPC 146
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L V
Sbjct: 147 GPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFK 205
Query: 185 NNERSRDFTNPNLPAE 200
N++ + D+TNPNL +
Sbjct: 206 NDQDTWDYTNPNLSGQ 221
>gi|345311818|ref|XP_003429156.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L
[Ornithorhynchus anatinus]
Length = 693
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 118/196 (60%), Gaps = 3/196 (1%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 12 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDILGACNAVNYA 71
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ R N +LL TI + +Y IT +VL+ +
Sbjct: 72 ADNQIYIAGHPAFVNYSTSQKISRPGDTDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 129
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 130 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 188
Query: 182 VNYNNERSRDFTNPNL 197
V N++ + D+TNPNL
Sbjct: 189 VFKNDQDTWDYTNPNL 204
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 319 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 378
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG++L V SK I G ++ S NRF+ AAKN
Sbjct: 379 NNNFMFGQKLNVCVSKQQAIMPGQSYGLEDGSCSYKDFSGSRNNRFSTPEQAAKNRIQ-- 436
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTE+ +E G + +GK + L+ +E++ A E
Sbjct: 437 HPSNVLHFFNAPLEVTEDNFFEICDELGVKRPASVKVFSGKSERSSSGLLEWESKSDALE 496
Query: 408 AL 409
L
Sbjct: 497 TL 498
>gi|356541547|ref|XP_003539236.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Glycine max]
Length = 447
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 167/337 (49%), Gaps = 52/337 (15%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLV--MLRAKNQALLQMQDVPSAINAL 58
T PSKV+H RN+ + SE +L++L PFG + ++ + +NQ ++ +D+ A + +
Sbjct: 19 FTVPSKVVHFRNLPKQCSEEELIKLCSPFGKVVNIMSGVGPNRNQGFVEFEDINEANSIV 78
Query: 59 QFYTNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEV 116
+Y + P +RG+ +YVQ+S EL N +G+ IL+VT+ + + ++V
Sbjct: 79 SYYLSSNPVQLRGKTIYVQYSERPELVI---NKYTKGN----ILIVTMEGIQAGDVGIDV 131
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQ 169
+H VFS GFV+KI TF+K+A FQA++Q+ +A A+ +L G++I Y C
Sbjct: 132 IHLVFSEFGFVQKISTFEKNACFQAMVQFPDVKTASSAKDALDGKSIPRYLLPNYVCDCN 191
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAA 229
L I +S +L + + + R+RD+TNP LP Q + A N A+
Sbjct: 192 LRITYSAHQDLTIKFQSNRTRDYTNPTLPVNQ---------TSIDRAIQPFENHVLWAS- 241
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
N+ D + D L ++FS YG + +I + +N HAL+Q
Sbjct: 242 -------------------FENMQYD-VTVDVLHSVFSEYGTVQKISIFEKNGQTHALIQ 281
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L G ++ +L +++S H +I
Sbjct: 282 YPDIATATAAKKALMGHCIYDGGCCKLRLSYSHHTDI 318
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 43/212 (20%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGR------ 71
D++ L F FG + K+ A QA++Q DV +A +A + + G+
Sbjct: 130 DVIHLVFSEFGFVQKISTFEKNACFQAMVQFPDVKTASSA-------KDALDGKSIPRYL 182
Query: 72 --------NVYVQFSSHQELTT----------------MEQNAQGRGDEP--NRILLVTI 105
N+ + +S+HQ+LT + Q + R +P N +L +
Sbjct: 183 LPNYVCDCNLRITYSAHQDLTIKFQSNRTRDYTNPTLPVNQTSIDRAIQPFENHVLWASF 242
Query: 106 HHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD 165
+M Y +TV+VLH VFS +G V+KI F+K+ ALIQY +A A+ +L G IYD
Sbjct: 243 ENMQYDVTVDVLHSVFSEYGTVQKISIFEKNGQTHALIQYPDIATATAAKKALMGHCIYD 302
Query: 166 -GCCQLDIQFSNLDELQVNYNNERSRDFTNPN 196
GCC+L + +S+ ++ V ++++SRD+T PN
Sbjct: 303 GGCCKLRLSYSHHTDINVKGSSDKSRDYTMPN 334
>gi|197927211|ref|NP_001128232.1| heterogeneous nuclear ribonucleoprotein L isoform a [Rattus
norvegicus]
Length = 623
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 136/242 (56%), Gaps = 18/242 (7%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSG-----YSEAGVAFPQMANAAAIA 227
V N++ + D+TNPNL P +++ +P G Y E G FP + + + A
Sbjct: 272 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGE-GRGFPSVDSRGSCA 330
Query: 228 AA 229
A
Sbjct: 331 PA 332
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 414 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 473
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG+++ V SK P I G ++ S NRF+ AAKN
Sbjct: 474 NNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQ 531
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTEE +E G T + +GK + L+ ++++ A E
Sbjct: 532 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALE 591
Query: 408 AL 409
L
Sbjct: 592 TL 593
>gi|74194841|dbj|BAE26011.1| unnamed protein product [Mus musculus]
Length = 592
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 136/242 (56%), Gaps = 18/242 (7%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 64 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 123
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 124 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 181
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 182 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 240
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSG-----YSEAGVAFPQMANAAAIA 227
V N++ + D+TNPNL P +++ +P G Y E G FP + + + A
Sbjct: 241 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGE-GRGFPSVDSRGSCA 299
Query: 228 AA 229
A
Sbjct: 300 PA 301
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 383 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 442
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG+++ V SK P I G ++ S NRF+ AAKN
Sbjct: 443 NNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQ 500
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTEE +E G T + +G+ + L+ ++++ A E
Sbjct: 501 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGQSERSSSGLLEWDSKSDALE 560
Query: 408 AL 409
L
Sbjct: 561 TL 562
>gi|149641747|ref|XP_001507993.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L, partial
[Ornithorhynchus anatinus]
Length = 360
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 157/339 (46%), Gaps = 52/339 (15%)
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VL+ V +P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I++
Sbjct: 1 DVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 59
Query: 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-- 218
+ L V N+ S D+T P L +G+ Q GY G P
Sbjct: 60 ARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLP 119
Query: 219 ---QMAN-----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 264
+M + A ++ GG P G V+VS L+ +++ ++FN
Sbjct: 120 SRYRMGSRDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFN 172
Query: 265 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT- 323
LF LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 173 LFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVP 232
Query: 324 -------QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
G ++ ++ S NRF + P+ ++H +P VTEE
Sbjct: 233 SQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLC 292
Query: 376 EEHGSIVNTKLFEMNGKKQA-----LVLFETEEQATEAL 409
+H + K + K A L+ +E + A EAL
Sbjct: 293 SDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 331
>gi|195584911|ref|XP_002082247.1| GD25314 [Drosophila simulans]
gi|194194256|gb|EDX07832.1| GD25314 [Drosophila simulans]
Length = 388
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 142/308 (46%), Gaps = 45/308 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGPVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNP------NLPAEQKGRPSQS 208
+L G +IY GCC L I ++ ++L V Y NE S D+T ++P SQ
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGKSLFSIPENVVMLESQP 196
Query: 209 GYSEAGVAFPQMA------------NAAAIAAAFGGGLPPGIT------------GTNDR 244
G AFP AAI P G+ G
Sbjct: 197 PLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQG 256
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 257 AVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNN 316
Query: 305 ALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
+ G ++++ FSK +++ EY S NRF A + P
Sbjct: 317 IPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPTFKEYTGSKNNRFLSPAQASKNRIQPP 376
Query: 354 TKMIHLST 361
+K++H T
Sbjct: 377 SKILHFFT 384
>gi|356531750|ref|XP_003534439.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 505
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 59/349 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGVEAGDVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-----------YDG- 166
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I Y
Sbjct: 131 LVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRQVALFVFFPYSST 190
Query: 167 -------CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ 219
CQ+ + L L D+TNP LP
Sbjct: 191 PSIILVIACQV---INLLTHLFFGICLMHFLDYTNPMLP--------------------- 226
Query: 220 MANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKL 277
N AI A + P VL++++ + + + D L +FS +G + +I +
Sbjct: 227 -VNYTAIEGAVQTAVGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAI 285
Query: 278 L-RNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
+N AL+Q D A A L+G ++ +L +++S+H ++
Sbjct: 286 FEKNGQTQALIQYPDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDL 334
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 5/136 (3%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY +
Sbjct: 244 GKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIIT 303
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFT--NPNLPAEQKGRPSQ 207
A AR +L+G IYD G C+L + +S +L V +++SRD+T +P+L A Q G P+
Sbjct: 304 ASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQ-GPPTA 362
Query: 208 SGYSEAGVAFPQMANA 223
+A +P A A
Sbjct: 363 WQNPQAASMYPGSAPA 378
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ + G I+NTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|26330256|dbj|BAC28858.1| unnamed protein product [Mus musculus]
Length = 326
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 118/196 (60%), Gaps = 9/196 (4%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 298 VIRNDNDSWDYTKPYL 313
>gi|154147563|ref|NP_001093751.1| heterogeneous nuclear ribonucleoprotein L [Xenopus (Silurana)
tropicalis]
gi|140832702|gb|AAI35425.1| hnrpl protein [Xenopus (Silurana) tropicalis]
Length = 538
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 118/197 (59%), Gaps = 4/197 (2%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+HVR + + E DL + Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 47 TAASPVVHVRGLIDGVVEADLAEALQEFGTISYVVVMPKKRQALVEFEDILGACNAVNYA 106
Query: 62 TNVQPTIRGRNVYVQFSSHQELT-TMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+ Q + G +V +S+ Q+++ + RG N +LL TI + +Y IT +VL+ +
Sbjct: 107 ADNQIYVAGHPAFVNYSTSQKISRPTDTGDDSRGV--NNVLLFTILNPIYSITTDVLYTI 164
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 165 CNPCGPVQRIVIFRKN-GVQAMVEFDSMQSAQRAKASLNGADIYSGCCTLKIEYAKPSRL 223
Query: 181 QVNYNNERSRDFTNPNL 197
V N++ + D+TNP L
Sbjct: 224 NVFKNDQDTWDYTNPAL 240
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 330 DSPVLMVYGLDPSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 389
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG++L V SK +I G + S NRF AAKN
Sbjct: 390 NNNFMFGQKLSVCVSKQQSIVPGQSYGLEDGSCSFKVFSGSRNNRFTSPEQAAKN--RIQ 447
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQALVLFETEEQATEAL 409
P+ ++H P +VTEE + +E G + K+F ++ + L E + + +EAL
Sbjct: 448 QPSSVLHFFNAPPEVTEENFIEMCDELGVKKPASIKIFSGKSERSSSGLLEWDSK-SEAL 506
>gi|397485367|ref|XP_003813820.1| PREDICTED: polypyrimidine tract-binding protein 1 [Pan paniscus]
Length = 783
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 118/200 (59%), Gaps = 9/200 (4%)
Query: 237 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 296
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+
Sbjct: 582 GLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQ 640
Query: 297 LAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRY 349
LA+ L G L GK + + SKH N+ +G + T +Y NS L+RF + +KN++
Sbjct: 641 LAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQN 700
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
P+ +HLS +P V+EE++ +G +V F +K AL+ + E+A +AL
Sbjct: 701 IFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 760
Query: 410 VCKHASSLGGS-IIRISFSQ 428
+ H LG + +R+SFS+
Sbjct: 761 IDLHNHDLGENHHLRVSFSK 780
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 59/82 (71%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 406 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 465
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +RG+ +Y+QFS+H+EL T
Sbjct: 466 VTPVLRGQPIYIQFSNHKELKT 487
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 332 MNSN-LNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386
M+SN + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 380 MSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--L 437
Query: 387 FEMNGKKQALVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 438 LMLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 489
>gi|410933304|ref|XP_003980031.1| PREDICTED: polypyrimidine tract-binding protein 2-like, partial
[Takifugu rubripes]
Length = 345
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 114/191 (59%), Gaps = 11/191 (5%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM D QA+LA+ L G
Sbjct: 154 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDANQAQLAMSHLNGQK 213
Query: 307 LFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
++GK + V SKH ++ D T +Y NS L+RF + +KN++ P+ +HL
Sbjct: 214 MYGKIIRVTLSKHQSVALPRDGLDDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHL 273
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
S +PQ+VTE+++ G V K F+ +K AL+ T E+A +AL+ H ++G
Sbjct: 274 SNIPQNVTEDDLRLLFSNTGGTVKAFKFFQ--DRKMALIQMSTVEEAIQALIDLHNYNMG 331
Query: 419 GSI-IRISFSQ 428
G+ +R+SFS+
Sbjct: 332 GNQHLRVSFSK 342
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 55/82 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +E +E +++ L PFG +T ++ L+ KNQA L+M +AI + +Y
Sbjct: 28 PSRVLHIRKLPNEATETEIIALGLPFGKVTNILTLKGKNQAFLEMGTEEAAITMVNYYAT 87
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +R V++Q+S+H+EL T
Sbjct: 88 VTPHVRNIPVFIQYSNHKELKT 109
>gi|297713191|ref|XP_002833087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Pongo abelii]
Length = 339
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 108 TPASPVVHIRGLIEGVVEADLVEDLQEFGPISSVVVMPKKRQALVEFEDVLGACNAVSYA 167
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 168 ADNQICIAGHPAFVNYSTIQKISHPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 225
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L ++++ L
Sbjct: 226 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQWAKASLNGADIYSGCCALKMEYAKPTRLN 284
Query: 182 VNYNNERSRDFTNPNL 197
V +++ + D+TNPNL
Sbjct: 285 VFKSDQDTWDYTNPNL 300
>gi|156368308|ref|XP_001627637.1| predicted protein [Nematostella vectensis]
gi|156214552|gb|EDO35537.1| predicted protein [Nematostella vectensis]
Length = 203
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 14/197 (7%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS+VIH R V E DL+Q+ QPFG IT + +L QAL++ + + SAI A+ Y
Sbjct: 3 TPPSRVIHCRAVADGCKETDLIQVLQPFGTITYVTLLPKIRQALVEFESLESAI-AVVTY 61
Query: 62 TNVQP-TIRGRNVYVQFSSHQEL---TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVL 117
+ P T+ GR ++V +S QE+ + ++ G E + ILL+TI + L+PI V++L
Sbjct: 62 SQTSPLTVLGRQMFVNYSKSQEIKRDKVLNGDSNGACAEASNILLLTIINPLHPINVKIL 121
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS-N 176
H++ SP G V +IV F K+ G QAL SA A + L G++IY GCC L I +S
Sbjct: 122 HKICSPSGKVLRIVIFHKN-GLQAL-------SAERALAVLNGQDIYAGCCTLKIDYSKK 173
Query: 177 LDELQVNYNNERSRDFT 193
+L V N++ + D+T
Sbjct: 174 AKKLNVFKNDDETWDYT 190
>gi|17532395|ref|NP_495412.1| Protein C44B7.2, isoform b [Caenorhabditis elegans]
gi|351065574|emb|CCD61556.1| Protein C44B7.2, isoform b [Caenorhabditis elegans]
Length = 339
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 43/306 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG + + AL++ +D+ A + F T+
Sbjct: 30 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFATS 89
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G+ +S+ Q + M + PN++L+VT+ + YPI +V++Q+ +
Sbjct: 90 NQINVGGQGALFNYSTSQCIERMGFESA----TPNKVLVVTVLNAQYPIDADVIYQISNA 145
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 146 QGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAKPDRVRVQ 205
Query: 184 YNNERSRDFTNPN--LPAEQKGR---------PSQSGYSEAGVAFPQMANAAAIAAAFGG 232
++ RDFT P+ P E PS GYS G + +GG
Sbjct: 206 RQDKDQRDFTLPDNRRPYEDDRNHYDRHDYQAPSSYGYSSRG---------GGHSDYYGG 256
Query: 233 --GLPPGI-----------------TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
G PP G C +++ L +I+ D LFN+ YGN++
Sbjct: 257 DRGGPPHPPPSRYRDDYEDRGYAQPAGGGPGCVMMIYGLEHGKINCDMLFNILCQYGNVL 316
Query: 274 RIKLLR 279
R+ R
Sbjct: 317 RVSSSR 322
>gi|170576691|ref|XP_001893730.1| hypothetical protein [Brugia malayi]
gi|158600096|gb|EDP37433.1| conserved hypothetical protein [Brugia malayi]
Length = 645
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 113/234 (48%), Gaps = 63/234 (26%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN +L V I +MLYP+T++VLHQ+FS +G V +I+TF K+ FQAL+Q SA +AR
Sbjct: 412 QPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLAR 471
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--------------AEQ 201
SL G+N+Y+GCC L I +S L L V YNN++SRD+TNPNLP A
Sbjct: 472 QSLDGQNVYNGCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSLVSAAT 531
Query: 202 KGR--PSQSGYSEAGVAFPQMANAAAI-------------AAAFGGGLPPGITG------ 240
G+ P+ + ++ AFP A A A G+ P +TG
Sbjct: 532 GGQMGPTIASLVQSPFAFPFGATNPQYAFQQQAAAFPQADALASPTGISPFLTGLTTTLA 591
Query: 241 ----------------------------TNDRCTVLVSNLNSDRIDEDKLFNLF 266
N VLVSNLN +++ D LF LF
Sbjct: 592 SGATSPVTANAAMINATAAALRFPHVNVLNMSSVVLVSNLNENKVTPDALFTLF 645
>gi|384245764|gb|EIE19256.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 443
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 110/344 (31%), Positives = 175/344 (50%), Gaps = 47/344 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ +E +E +L +L FG I TKL + KNQA ++ D+ AI + ++
Sbjct: 13 PSKVLHIRNLPYETTEEELRELCSNFGPIVQTKLNVGTNKNQAFVEFPDMNMAIQMVSYF 72
Query: 62 TNVQ--PTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP---ITVEV 116
N +RG+ VY+Q+S+ QE+ ++A+ G+ +LLV++ + L P +T++
Sbjct: 73 ANAADPAKVRGKTVYLQYSTRQEIVNSTRSAEQGGN----VLLVSLEN-LAPDMNVTLDT 127
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC-------Q 169
LH VFS G V+KI TF+K GFQAL+QY +A R +L GR+I
Sbjct: 128 LHLVFSAFGLVQKIATFEKGQGFQALVQYADAETAEQVRLALDGRHIPKHLLNDTPNPPS 187
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAA 229
L I +S +L V + + RSRD+TN LPA G P +A
Sbjct: 188 LKITYSQHTDLNVKFQSHRSRDYTNLYLPAAPAG------------GDPNLA-------- 227
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHAL 286
G+ I+G VL+ + + ++ D L +FS YG + +I + +N AL
Sbjct: 228 --LGIQAPISGNPLEGNVLLCQIENQAYPVNVDALNTVFSPYGFVQKIAIFDKNGQSQAL 285
Query: 287 VQMGDGFQAELAVHFLKGALLFG---KRLEVNFSKHPNITQGAD 327
+Q D A A L+G ++ RL++++S H N+ A+
Sbjct: 286 IQYPDPLSATNAKSALEGHAIYDGGYNRLKISYSVHRNLNVKAN 329
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 75 VQFSSHQ--ELTTMEQNAQGRGDEPN----------------RILLVTIHHMLYPITVEV 116
V+F SH+ + T + A G +PN +LL I + YP+ V+
Sbjct: 200 VKFQSHRSRDYTNLYLPAAPAGGDPNLALGIQAPISGNPLEGNVLLCQIENQAYPVNVDA 259
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC-QLDIQFS 175
L+ VFSP+GFV+KI F K+ QALIQY SA A+S+L+G IYDG +L I +S
Sbjct: 260 LNTVFSPYGFVQKIAIFDKNGQSQALIQYPDPLSATNAKSALEGHAIYDGGYNRLKISYS 319
Query: 176 NLDELQVNYNNERSRDFT-NPNLPAEQKGRPSQS 208
L V NN+RS D+T P P Q P S
Sbjct: 320 VHRNLNVKANNDRSCDYTLQPGAP--QAATPDHS 351
>gi|256077460|ref|XP_002575022.1| polypyrimidine tract binding protein [Schistosoma mansoni]
gi|360043943|emb|CCD81489.1| putative polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 597
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 20/220 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 26 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 85
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGRN+ +Q+S HQ L +N+ P +L V
Sbjct: 86 REYQVTLRGRNLVMQYSKHQHLELHSENSSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 145
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 146 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 205
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ 201
IY GCC L +QFS N L+V ++R RD+ N L E+
Sbjct: 206 IYTGCCSLRVQFSKNRGPLEVRQESDRCRDYLNNPLTEEE 245
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 127/242 (52%), Gaps = 26/242 (10%)
Query: 207 QSGYSEAGVAFPQMA--NAAAIAAA----------FGGGLPPGITGTNDRCTVLVSNLNS 254
Q G + GV P M+ NA+ + + G PP G+ ++VSNLN
Sbjct: 359 QGGAVQTGV-LPHMSGGNASVMGSVQTPVSSHVTPVGVRSPPNNNGS---TVLIVSNLNE 414
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314
DR+ D LF LF +YG++ R+K++ NK D AL+Q D QA A+ FL G L+ K +++
Sbjct: 415 DRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFNDPHQALTALQFLNGQRLWDKPMKI 474
Query: 315 NFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
S+H NI T+ T +Y NS L+RF + +KN++ P+ ++HLS +P VT
Sbjct: 475 AVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRKPNSKNFQNIYPPSHVLHLSNIPPSVT 533
Query: 368 EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISF 426
E +I G V F M K ALV ET + A ++L+ H S L S +RISF
Sbjct: 534 ENDIRVLFATKGFEVTGFRF-MKDNKMALVQLETVDLAIQSLIELHNSQLTENSHLRISF 592
Query: 427 SQ 428
S+
Sbjct: 593 SK 594
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 48/206 (23%)
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS-------SLQGRNIYDGCCQLDIQFS 175
P G +E +V +K+ QAL++ Q SA++ S +L+GRN L +Q+S
Sbjct: 52 PFGLLENMVLSKKAN--QALLEMQCLESAIMMVSYYREYQVTLRGRN-------LVMQYS 102
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP 235
L+++ N S G A + NA I G
Sbjct: 103 KHQHLELHSEN------------------------SSIGNA---IQNANCIVQQDLSGAN 135
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQ 294
G+ T R V+V N+ +I+ L +F YG I+RI L+N H LV+ G+
Sbjct: 136 SGMPTTVLR--VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIH 193
Query: 295 AELAVHFLKGALLFGK--RLEVNFSK 318
A +A+ L G ++ L V FSK
Sbjct: 194 AFVAMLHLNGQNIYTGCCSLRVQFSK 219
>gi|157879788|pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 8/192 (4%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
+LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G
Sbjct: 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 63
Query: 305 ALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
L GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +
Sbjct: 64 HKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATL 123
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
HLS +P V+EE++ +G +V F +K AL+ + E+A +AL+ H L
Sbjct: 124 HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 183
Query: 418 G-GSIIRISFSQ 428
G +R+SFS+
Sbjct: 184 GENHHLRVSFSK 195
>gi|402588250|gb|EJW82183.1| hypothetical protein WUBG_06907, partial [Wuchereria bancrofti]
Length = 255
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 79/106 (74%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN +L V I +MLYP+T++VLHQ+FS +G V +I+TF K+ FQAL+Q SA +AR
Sbjct: 33 QPNSVLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLAR 92
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ 201
SL G+N+Y+GCC L I +S L L V YNN++SRD+TNPNLP+ +
Sbjct: 93 QSLDGQNVYNGCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGE 138
>gi|25988650|gb|AAN76190.1| BLOCK24 variant [Homo sapiens]
Length = 262
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 9/196 (4%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 244 VIRNDNDSWDYTKPYL 259
>gi|413955317|gb|AFW87966.1| hypothetical protein ZEAMMB73_428640 [Zea mays]
Length = 229
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 119/197 (60%), Gaps = 18/197 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + NQA ++ DV AI+ + ++
Sbjct: 17 PSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAISMVSYF 76
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP-ITVEVLH 118
++ +P IRG+ VY+Q+S+ QE+ N + G+ +LLVTI + +T++V+H
Sbjct: 77 ASSSEPAQIRGKTVYIQYSNRQEII----NNKSPGETAGNVLLVTIEGVQSSDVTIDVIH 132
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--------YDGCCQL 170
VFS G+V KI TF+K+AGFQALIQY +A A+ SL GR+I CC L
Sbjct: 133 MVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKESLDGRSIPSYLLPEHVTSCC-L 191
Query: 171 DIQFSNLDELQVNYNNE 187
I FS +L + + ++
Sbjct: 192 RISFSAHKDLNIKFQSK 208
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE+V + G IVNTK QA V F QA
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAI 70
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V ASS + G + I +S Q I N
Sbjct: 71 -SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINN 103
>gi|52545658|emb|CAH56358.1| hypothetical protein [Homo sapiens]
Length = 216
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 9/196 (4%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 9 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 68
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 69 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 123
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 124 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 182
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 183 VIRNDNDSWDYTKPYL 198
>gi|31416927|gb|AAH08217.2| HNRPLL protein [Homo sapiens]
Length = 275
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 9/196 (4%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 130 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 184
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 185 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 244 VIRNDNDSWDYTKPYL 259
>gi|76157758|gb|AAX28586.2| SJCHGC05650 protein [Schistosoma japonicum]
Length = 381
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 52 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 111
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGR + +Q+S HQ L +N P +L V
Sbjct: 112 REYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 171
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 172 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 231
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGRPSQSG 209
IY GCC L +QFS N L+V +E+ RD+ N L E+ RP+ G
Sbjct: 232 IYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRRPTAGG 282
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 48/206 (23%)
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS-------SLQGRNIYDGCCQLDIQFS 175
P G +E +V +K+ QAL++ Q SA++ S +L+GR L +Q+S
Sbjct: 78 PFGLLENMVLSKKAN--QALLEMQCLESAIMMVSYYREYQVTLRGRT-------LVMQYS 128
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP 235
L++ +SE + NA I G
Sbjct: 129 KHQHLEL---------------------------HSENTSIGNAIQNANCIVQQDLSGAN 161
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQ 294
G+ T R V+V N+ +I+ L +F YG I+RI L+N H LV+ G+
Sbjct: 162 SGMPTTVLR--VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIH 219
Query: 295 AELAVHFLKGALLFGK--RLEVNFSK 318
A +A+ L G ++ L V FSK
Sbjct: 220 AFVAMLHLNGQNIYTGCCSLRVQFSK 245
>gi|224118178|ref|XP_002317750.1| predicted protein [Populus trichocarpa]
gi|222858423|gb|EEE95970.1| predicted protein [Populus trichocarpa]
Length = 350
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 172/336 (51%), Gaps = 47/336 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY-T 62
PSKV+H+RN+ E + + + + F I V+L A ++ D+ AI + +Y +
Sbjct: 14 PSKVLHLRNLPWECAYS----MCKEFCFINN-VLLVASCCCVVLFSDLNQAIAMISYYAS 68
Query: 63 NVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQV 120
+ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH V
Sbjct: 69 SSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVGGNVLLVTIEGADARLVSIDVLHLV 124
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDIQ 173
FS GFV KI TF+K+AGFQAL+Q+ +A A+++L GRNI + G C L I
Sbjct: 125 FSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLRIT 184
Query: 174 FSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGG 233
+S +L V + + RSRD+TN NLP PS AN G
Sbjct: 185 YSAHTDLSVKFQSHRSRDYTNANLPVA----PSAID-----------ANGMFSVGLDGKK 229
Query: 234 LPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQMG 290
L P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 230 LEP-------ESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYP 282
Query: 291 DGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L +++S+H +++
Sbjct: 283 DVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHSDLS 318
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 53/222 (23%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A +A + + GRN+
Sbjct: 119 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSA-------KNALDGRNIPSYL 171
Query: 74 ----------YVQFSSHQELTTMEQNAQ---------------------------GRGDE 96
+ +S+H +L+ Q+ + G+ E
Sbjct: 172 LPEHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLE 231
Query: 97 P-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P + +LL +I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+
Sbjct: 232 PESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 291
Query: 156 SSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+L+G IYD G C+L + +S +L + NN+RSRD+T PN
Sbjct: 292 EALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPN 333
>gi|194389366|dbj|BAG61644.1| unnamed protein product [Homo sapiens]
Length = 204
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 9/201 (4%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
PG++ + +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q+
Sbjct: 2 PGVSAGGN-TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 60
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYR 348
+LA++ L G ++GK + V SKH + +G D T ++ NS L+RF + +KN++
Sbjct: 61 QLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQ 120
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
P+ +HLS +P V EE++ + G V F K AL+ T E+A +A
Sbjct: 121 NIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQA 180
Query: 409 LVCKHASSLG-GSIIRISFSQ 428
L+ H +LG +R+SFS+
Sbjct: 181 LIDLHNYNLGENHHLRVSFSK 201
>gi|350583630|ref|XP_003481556.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Sus scrofa]
Length = 255
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 9/201 (4%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
PG++ + +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q+
Sbjct: 53 PGVSAGGN-TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 111
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYR 348
+LA++ L G ++GK + V SKH + +G D T ++ NS L+RF + +KN++
Sbjct: 112 QLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQ 171
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
P+ +HLS +P V EE++ + G V F K AL+ T E+A +A
Sbjct: 172 NIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQA 231
Query: 409 LVCKHASSLG-GSIIRISFSQ 428
L+ H +LG +R+SFS+
Sbjct: 232 LIDLHNYNLGENHHLRVSFSK 252
>gi|324504296|gb|ADY41855.1| Heterogeneous nuclear ribonucleoprotein L, partial [Ascaris suum]
Length = 626
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 114/198 (57%), Gaps = 6/198 (3%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVRN+ + +E DLL+ FG I+ + K AL++ ++V A + +
Sbjct: 22 DPSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPGKRMALVEFEEVEGARACVVYAQ 81
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
Q + G+ +S+ + M Q + PN +L++TI++ YP+TV+V+HQ+
Sbjct: 82 TNQIYVAGQAALFNYSTSK----MIQRLGLESEHPNHVLILTIYNAQYPVTVDVIHQICE 137
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
PHGFV++I +++ QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 138 PHGFVKRIAMIRRTM-LQALVEFESADVAKKAKHAMNGADIYSGCCTLKVEFAKPDHVKV 196
Query: 183 NYNNERSRDFTNPNLPAE 200
N++ D+T N PAE
Sbjct: 197 TRNDQDQWDYTT-NAPAE 213
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D V+V ++ + DKLFNL LYGN RIK +++KPD + QMG+ + + L
Sbjct: 411 DGTVVMVYGIDQTNFNCDKLFNLLCLYGNCERIKFMKSKPDTCMAQMGNVREVYTTIENL 470
Query: 303 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC----------CS 352
G +FG+++ + SK + + D + + + ++N RY
Sbjct: 471 HGTTVFGQKIALRPSKQQVLHEIRDPFTLPDGTPSFRDYTGSRNQRYTTPELAARNRIVK 530
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G+ V + LF ++ + + FE+ EQA EA
Sbjct: 531 PTNVLHWFNAPVTMTEEKLKELFADRGAAVPKSVTLFPQRSERSSSGICEFESTEQAVEA 590
Query: 409 LVCKH----ASSLGGS--IIRISFS 427
L+ + S +G + I++++F+
Sbjct: 591 LLLANHTPVESPVGKAPYIVKLAFA 615
>gi|324503755|gb|ADY41626.1| Heterogeneous nuclear ribonucleoprotein L, partial [Ascaris suum]
Length = 614
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 114/198 (57%), Gaps = 6/198 (3%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVRN+ + +E DLL+ FG I+ + K AL++ ++V A + +
Sbjct: 22 DPSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPGKRMALVEFEEVEGARACVVYAQ 81
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
Q + G+ +S+ + M Q + PN +L++TI++ YP+TV+V+HQ+
Sbjct: 82 TNQIYVAGQAALFNYSTSK----MIQRLGLESEHPNHVLILTIYNAQYPVTVDVIHQICE 137
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
PHGFV++I +++ QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 138 PHGFVKRIAMIRRTM-LQALVEFESADVAKKAKHAMNGADIYSGCCTLKVEFAKPDHVKV 196
Query: 183 NYNNERSRDFTNPNLPAE 200
N++ D+T N PAE
Sbjct: 197 TRNDQDQWDYTT-NAPAE 213
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D V+V ++ + DKLFNL LYGN RIK +++KPD + QMG+ + + L
Sbjct: 399 DGTVVMVYGIDQTNFNCDKLFNLLCLYGNCERIKFMKSKPDTCMAQMGNVREVYTTIENL 458
Query: 303 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC----------CS 352
G +FG+++ + SK + + D + + + ++N RY
Sbjct: 459 HGTTVFGQKIALRPSKQQVLHEIRDPFTLPDGTPSFRDYTGSRNQRYTTPELAARNRIVK 518
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G+ V + LF ++ + + FE+ EQA EA
Sbjct: 519 PTNVLHWFNAPVTMTEEKLKELFADRGAAVPKSVTLFPQRSERSSSGICEFESTEQAVEA 578
Query: 409 LVCKH----ASSLGGS--IIRISFS 427
L+ + S +G + I++++F+
Sbjct: 579 LLLANHTPVESPVGKAPYIVKLAFA 603
>gi|226472642|emb|CAX71007.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 622
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 52 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 111
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGR + +Q+S HQ L +N P +L V
Sbjct: 112 REYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 171
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 172 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 231
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGRPSQSG 209
IY GCC L +QFS N L+V +E+ RD+ N L E+ RP+ G
Sbjct: 232 IYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRRPTAGG 282
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G PP N ++VSNLN DR+ D LF LF +YG++ R+K++ NK D AL+Q D
Sbjct: 419 GVRPP--PNNNGSTVLIVSNLNEDRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFTD 476
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA A+ FL G L+ K +++ S+H NI T+ T +Y NS L+RF + +
Sbjct: 477 PHQALTALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRKPNS 535
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ ++HLS +P VTE +I G V F M K ALV ET +
Sbjct: 536 KNFQNIYPPSHVLHLSNIPPSVTENDIRVLFATKGFEVTGFRF-MKDNKMALVQLETVDL 594
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H S L S +RISFS+
Sbjct: 595 AIQSLIELHNSQLTENSHLRISFSK 619
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P G +E +V +K+ QAL++ Q SA++ S + + L +Q+S L++
Sbjct: 78 PFGLLENMVLSKKAN--QALLEMQCLESAIMMVSYYREYQVTLRGRTLVMQYSKHQHLEL 135
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN 242
+ N + G A + NA I G G+ T
Sbjct: 136 HSEN------------------------TSIGNA---IQNANCIVQQDLSGANSGMPTTV 168
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHF 301
R V+V N+ +I+ L +F YG I+RI L+N H LV+ G+ A +A+
Sbjct: 169 LR--VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLH 226
Query: 302 LKGALLFGK--RLEVNFSK 318
L G ++ L V FSK
Sbjct: 227 LNGQNIYTGCCSLRVQFSK 245
>gi|226468146|emb|CAX76300.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 622
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 52 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 111
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGR + +Q+S HQ L +N P +L V
Sbjct: 112 REYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 171
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 172 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 231
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGRPSQSG 209
IY GCC L +QFS N L+V +E+ RD+ N L E+ RP+ G
Sbjct: 232 IYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRRPTAGG 282
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G PP N ++VSNLN DR+ D LF LF +YG++ R+K++ NK D AL+Q D
Sbjct: 419 GVRPP--PNNNGSTVLIVSNLNEDRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFTD 476
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA A+ FL G L+ K +++ S+H NI T+ T +Y NS L+RF + +
Sbjct: 477 PHQALTALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRKPNS 535
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ ++HLS +P VTE +I G V F M K ALV ET +
Sbjct: 536 KNFQNIYPPSHVLHLSNIPPSVTENDIRVLFATKGFEVTGFRF-MKDNKMALVQLETVDL 594
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H S L S +RISFS+
Sbjct: 595 AIQSLIELHNSQLTENSHLRISFSK 619
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P G +E +V +K+ QAL++ Q SA++ S + + L +Q+S L++
Sbjct: 78 PFGLLENMVLSKKAN--QALLEMQCLESAIMMVSYYREYQVTLRGRTLVMQYSKHQHLEL 135
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN 242
+ N + G A + NA I G G+ T
Sbjct: 136 HSEN------------------------TSIGNA---IQNANCIVQQDLSGANSGMPTTV 168
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHF 301
R V+V N+ +I+ L +F YG I+RI L+N H LV+ G+ A +A+
Sbjct: 169 LR--VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLH 226
Query: 302 LKGALLFGK--RLEVNFSK 318
L G ++ L V FSK
Sbjct: 227 LNGQNIYTGCCSLRVQFSK 245
>gi|226468144|emb|CAX76299.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 436
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 40 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 99
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGR + +Q+S HQ L +N P +L V
Sbjct: 100 REYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 159
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 160 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 219
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGRPSQSG 209
IY GCC L +QFS N L+V +E+ RD+ N L E+ RP+ G
Sbjct: 220 IYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRRPTAGG 270
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHFLKGA 305
V+V N+ +I+ L +F YG I+RI L+N H LV+ G+ A +A+ L G
Sbjct: 159 VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQ 218
Query: 306 LLFGK--RLEVNFSK 318
++ L V FSK
Sbjct: 219 NIYTGCCSLRVQFSK 233
>gi|312097472|ref|XP_003148986.1| hypothetical protein LOAG_13430 [Loa loa]
Length = 255
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 78/104 (75%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN +L V I +MLYP+T++VL+Q+FS +G V +I+TF K+ FQAL+Q SA +AR
Sbjct: 33 QPNSVLRVIIENMLYPVTLDVLYQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLAR 92
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
SL G+N+Y+GCC L I +S L L V YNN++SRD+TNPNLP+
Sbjct: 93 QSLDGQNVYNGCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPS 136
>gi|226472640|emb|CAX71006.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 596
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 26 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 85
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGR + +Q+S HQ L +N P +L V
Sbjct: 86 REYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 145
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 146 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 205
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGRPSQSG 209
IY GCC L +QFS N L+V +E+ RD+ N L E+ RP+ G
Sbjct: 206 IYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRRPTAGG 256
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G PP N ++VSNLN DR+ D LF LF +YG++ R+K++ NK D AL+Q D
Sbjct: 393 GVRPP--PNNNGSTVLIVSNLNEDRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFTD 450
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA A+ FL G L+ K +++ S+H NI T+ T +Y NS L+RF + +
Sbjct: 451 PHQALTALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRKPNS 509
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ ++HLS +P VTE +I G V F M K ALV ET +
Sbjct: 510 KNFQNIYPPSHVLHLSNIPPSVTENDIRVLFATKGFEVTGFRF-MKDNKMALVQLETVDL 568
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H S L S +RISFS+
Sbjct: 569 AIQSLIELHNSQLTENSHLRISFSK 593
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P G +E +V +K+ QAL++ Q SA++ S + + L +Q+S L++
Sbjct: 52 PFGLLENMVLSKKAN--QALLEMQCLESAIMMVSYYREYQVTLRGRTLVMQYSKHQHLEL 109
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN 242
+ N + G A + NA I G G+ T
Sbjct: 110 HSEN------------------------TSIGNA---IQNANCIVQQDLSGANSGMPTTV 142
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHF 301
R V+V N+ +I+ L +F YG I+RI L+N H LV+ G+ A +A+
Sbjct: 143 LR--VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLH 200
Query: 302 LKGALLFGK--RLEVNFSK 318
L G ++ L V FSK
Sbjct: 201 LNGQNIYTGCCSLRVQFSK 219
>gi|226468148|emb|CAX76301.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 610
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PSKV+H+RN+ + +E+++ L PFG++ +V+ + NQALL+MQ + SAI + +Y
Sbjct: 40 TVPSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKANQALLEMQCLESAIMMVSYY 99
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLV 103
Q T+RGR + +Q+S HQ L +N P +L V
Sbjct: 100 REYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRV 159
Query: 104 TIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+ +++ I +LH++F +G + +IVT+ K+ + L+++ A VA L G+N
Sbjct: 160 VVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQN 219
Query: 163 IYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGRPSQSG 209
IY GCC L +QFS N L+V +E+ RD+ N L E+ RP+ G
Sbjct: 220 IYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRRPTAGG 270
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G PP N ++VSNLN DR+ D LF LF +YG++ R+K++ NK D AL+Q D
Sbjct: 407 GVRPP--PNNNGSTVLIVSNLNEDRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFTD 464
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA A+ FL G L+ K +++ S+H NI T+ T +Y NS L+RF + +
Sbjct: 465 PHQALTALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRKPNS 523
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ ++HLS +P VTE +I G V F M K ALV ET +
Sbjct: 524 KNFQNIYPPSHVLHLSNIPPSVTENDIRVLFATKGFEVTGFRF-MKDNKMALVQLETVDL 582
Query: 405 ATEALVCKHASSLG-GSIIRISFSQ 428
A ++L+ H S L S +RISFS+
Sbjct: 583 AIQSLIELHNSQLTENSHLRISFSK 607
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P G +E +V +K+ QAL++ Q SA++ S + + L +Q+S L++
Sbjct: 66 PFGLLENMVLSKKAN--QALLEMQCLESAIMMVSYYREYQVTLRGRTLVMQYSKHQHLEL 123
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTN 242
+ N + G A + NA I G G+ T
Sbjct: 124 HSEN------------------------TSIGNA---IQNANCIVQQDLSGANSGMPTTV 156
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHF 301
R V+V N+ +I+ L +F YG I+RI L+N H LV+ G+ A +A+
Sbjct: 157 LR--VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLH 214
Query: 302 LKGALLFGK--RLEVNFSK 318
L G ++ L V FSK
Sbjct: 215 LNGQNIYTGCCSLRVQFSK 233
>gi|414870437|tpg|DAA48994.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 227
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 37/232 (15%)
Query: 68 IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVLHQVFSPHG 125
+RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+H VFS G
Sbjct: 14 VRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVIHLVFSAFG 68
Query: 126 FVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDIQFSNLD 178
FV KI TF+K+AGFQALIQY P+A+ A++SL GR+I + G C + I FS
Sbjct: 69 FVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHIGACHMRITFSAHK 128
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGI 238
+L + + + RSRD+TNP LP Q + G+ P + P G
Sbjct: 129 DLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG-------------PDGK 167
Query: 239 TGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
+ +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 168 VKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQ 219
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 51/168 (30%)
Query: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV--------- 73
+F FG + K+ A QAL+Q D P+A+ A + ++ GR++
Sbjct: 63 VFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEA-------KNSLDGRSIPKYLLPEHI 115
Query: 74 -----YVQFSSHQEL---------------------TTMEQNAQ------GRGDEP-NRI 100
+ FS+H++L T +E Q G+ EP + +
Sbjct: 116 GACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 175
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY R
Sbjct: 176 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPER 223
>gi|226487296|emb|CAX75513.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 571
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 9/201 (4%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
P + T ++VSNLN +++ D LF LF +YG++ R+K++ NK ALVQ D QA
Sbjct: 369 PNMGQTATSTVLIVSNLNEEKVYPDALFTLFGVYGDVTRVKIMFNKKSTALVQFSDPQQA 428
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYR 348
A+++L G L+G+ L+++ S+ NI Q T +Y NS L+RF + +KN+
Sbjct: 429 LTALYYLNGQPLYGRPLKISVSRF-NIVQLPKEDTDVGLTKDYTNSPLHRFRKPNSKNFS 487
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
+P ++HLS +P D+TEEE+ E G V F + KK AL+ E + A +A
Sbjct: 488 NIYAPNHVLHLSNIPSDITEEEVRMIFETKGYHVTDFKFLLKDKKMALIQLENVDMAIQA 547
Query: 409 LVCKHASSLG-GSIIRISFSQ 428
++ H L S +RISFS+
Sbjct: 548 MIDLHNCQLTENSHLRISFSK 568
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + ++ + Y
Sbjct: 20 PSRVIHIRNMPADATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEESVQLVAHYLK 79
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLVTI 105
T+ G+++ QFS+H L + +N + PN +L V I
Sbjct: 80 YPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVI 139
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+++ I +L+++F G + +++ F ++ ++ L+++Q A VA L G+NIY
Sbjct: 140 DNIMGQQINHVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVAMLLLNGQNIY 199
Query: 165 DGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
GCC L ++F L+V N++ RD+T
Sbjct: 200 TGCCSLQVEFWKARGPLEVRRENDKCRDYT 229
>gi|226487300|emb|CAX75515.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
gi|226487302|emb|CAX75516.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 603
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 9/201 (4%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
P + T ++VSNLN +++ D LF LF +YG++ R+K++ NK ALVQ D QA
Sbjct: 401 PNMGQTATSTVLIVSNLNEEKVYPDALFTLFGVYGDVTRVKIMFNKKSTALVQFSDPQQA 460
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYR 348
A+++L G L+G+ L+++ S+ NI Q T +Y NS L+RF + +KN+
Sbjct: 461 LTALYYLNGQPLYGRPLKISVSRF-NIVQLPKEDTDVGLTKDYTNSPLHRFRKPNSKNFS 519
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 408
+P ++HLS +P D+TEEE+ E G V F + KK AL+ E + A +A
Sbjct: 520 NIYAPNHVLHLSNIPSDITEEEVRMIFETKGYHVTDFKFLLKDKKMALIQLENVDMAIQA 579
Query: 409 LVCKHASSLG-GSIIRISFSQ 428
++ H L S +RISFS+
Sbjct: 580 MIDLHNCQLTENSHLRISFSK 600
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + ++ + Y
Sbjct: 52 PSRVIHIRNMPADATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEESVQLVAHYLK 111
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLVTI 105
T+ G+++ QFS+H L + +N + PN +L V I
Sbjct: 112 YPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVI 171
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+++ I +L+++F G + +++ F ++ ++ L+++Q A VA L G+NIY
Sbjct: 172 DNIMGQQINHVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVAMLLLNGQNIY 231
Query: 165 DGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
GCC L ++F L+V N++ RD+T
Sbjct: 232 TGCCSLQVEFWKARGPLEVRRENDKCRDYT 261
>gi|386768315|ref|NP_725913.2| smooth, isoform P [Drosophila melanogaster]
gi|383302600|gb|AAM68420.2| smooth, isoform P [Drosophila melanogaster]
Length = 434
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 163/360 (45%), Gaps = 45/360 (12%)
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VLH++ PHG V +IV F+K+ G QA++++ +A AR +L G +IY GCC L I +
Sbjct: 51 DVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADIYAGCCTLKIDY 109
Query: 175 SNLDELQVNYNNE--RSRDFT--------NPNLPAEQKGRPSQSGYSEAGVAFPQMANAA 224
+ ++L V Y NE S D+T P L P G E P+ A
Sbjct: 110 AKPEKLNV-YKNEPDTSWDYTLSTGEILPKPPLLGPGAAFPP-FGAPEYHTTTPENWKGA 167
Query: 225 AIAAAFGGGLPPGIT------------GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI 272
AI P G+ G ++V L+ D + DKLFNL LYGN+
Sbjct: 168 AIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNV 227
Query: 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSKHPNITQ------- 324
RIK L+ K A+VQMGD E V L + G ++++ FSK +++
Sbjct: 228 ARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLL 287
Query: 325 ---GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGS 380
EY S NRF A + P+K++H P +TE++++ +
Sbjct: 288 PDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVP 347
Query: 381 IVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS-----IIRISFSQLQSI 432
+ +LF + ++ + L+ F QA A++ C H G I+++ FS +S+
Sbjct: 348 ATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 407
>gi|149050610|gb|EDM02783.1| heterogeneous nuclear ribonucleoprotein L-like (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 410
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 164/380 (43%), Gaps = 59/380 (15%)
Query: 75 VQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ 134
V+ S QE T+ Q A RIL + + M Y + +L + ++ +
Sbjct: 18 VKESLGQETLTILQGATKSSCSLFRILFIQLQWMFYILYATLLEKY--------SVLLYS 69
Query: 135 KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTN 194
+ G++ + ++ A A+++L G +IY GCC L I+++ L V N+ S D+T
Sbjct: 70 REMGYKQCLTFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTK 129
Query: 195 PNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN-----------AA 224
P L +G+ Q GY G P +M +
Sbjct: 130 PYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQ 189
Query: 225 AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 284
A ++ GG P G V+VS L+ +++ ++FNLF LYGNI ++K ++ P
Sbjct: 190 ASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGT 242
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSN 335
ALV+MGD + E AV L LFGKRL V SK ++ G ++ ++ S
Sbjct: 243 ALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSK 302
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGKK 393
NRF + P+ ++H +P VTEE +H + + K+F+
Sbjct: 303 NNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIKYKVFDAKASA 362
Query: 394 Q---ALVLFETEEQATEALV 410
+ L+ ++ + A EAL
Sbjct: 363 KTLSGLLEWKCKTDAVEALT 382
>gi|358337425|dbj|GAA28121.2| regulator of differentiation 1 [Clonorchis sinensis]
Length = 757
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 20/241 (8%)
Query: 210 YSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY 269
Y + A M + A++ A+ G P T N V VSNLN +RI D LF LF +Y
Sbjct: 520 YIPSNTAVLGMQSTASLMASSVGKEDP--TRINQSPVVFVSNLNQERITPDTLFTLFGVY 577
Query: 270 GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGA 326
G++ R+K+L NK D A++Q+ D QA++AV++L L+GK++ SK+ +T G
Sbjct: 578 GDVQRVKILHNKKDSAMIQLADCNQAQMAVNYLDKVPLYGKQMRCTLSKNMAVTIPVPGK 637
Query: 327 D------------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 374
D EY+ L+RF R A+ + C+P++++H+S LP+ VTE+++
Sbjct: 638 DDSEASAENINQLNREYIGHRLHRFRRPNARYLQNLCAPSRVLHISNLPEQVTEDDLTDV 697
Query: 375 LEEHGSI-VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQLQSI 432
G + V K ALV + E+A L+ H L ++ +R+SFS+ SI
Sbjct: 698 FMRVGGLQVEAVKLVKTPKPMALVQLQDVEKAVTGLIALHDYELVDNLHMRVSFSK-SSI 756
Query: 433 R 433
R
Sbjct: 757 R 757
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 42/245 (17%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS+V+ +RN+ +I+E ++ L PFGVI+ +V+ + AL+++ D +A N + +Y
Sbjct: 207 TAPSRVLFIRNLPLDITETEVANLALPFGVISNMVITKRSGLALIELMDQQAAENMVDYY 266
Query: 62 TNV-QPTIRGRN-VYVQFSSH---------QELTTMEQNAQGRG---------DEPNRIL 101
V P IRG+ V V FS H Q++ NA R P ++
Sbjct: 267 GTVYAPIIRGKGPVVVSFSRHTSLTTTTTSQQVAEAIINANKRYGLSAVQDPITNPRSVI 326
Query: 102 LVTIHHMLYPITVEV----LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
V ++ P+ V + +F+ G + +IVTF+ A I++Q SA VA
Sbjct: 327 RVQLYQT--PVGVHFGYLQFYNLFAQFGTILRIVTFKTGTVPSAFIEFQSPISAHVAVLQ 384
Query: 158 LQGRNIY------DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
G N G C + FS ++V + RDFT +P GY
Sbjct: 385 TDGANFTLEEAPGSGPCIMRTDFSRQSTVEVRSEDANCRDFTRNPMP----------GYG 434
Query: 212 EAGVA 216
E+ VA
Sbjct: 435 ESDVA 439
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVI----TKLVMLRAKNQALLQMQDVPSAIN 56
+ PS+V+H+ N+ +++E+DL +F G + KLV K AL+Q+QDV A+
Sbjct: 673 LCAPSRVLHISNLPEQVTEDDLTDVFMRVGGLQVEAVKLVKT-PKPMALVQLQDVEKAVT 731
Query: 57 AL 58
L
Sbjct: 732 GL 733
>gi|125526877|gb|EAY74991.1| hypothetical protein OsI_02889 [Oryza sativa Indica Group]
Length = 583
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 171/362 (47%), Gaps = 76/362 (20%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKVIH+RN+ + +E +L++L PFG + TK + +NQA ++ D AI + ++
Sbjct: 14 PSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFADQNQAIAMISYF 73
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY-PITVEVLH 118
++ +P +RG+NVY+Q+S+ QE+ N++ G+ +LLV++ +L ++++VLH
Sbjct: 74 ASSAEPAQVRGKNVYLQYSNRQEIV----NSKSSGEAAGNVLLVSMEGVLPDAVSIDVLH 129
Query: 119 ----------------------------------QVFSPHGFVEKIVTFQKSAGFQALIQ 144
VFS GFV+KI TF+K++G+QALIQ
Sbjct: 130 LAIVTEFHGILAGYCIRNTCYQTCGRVNGEWKVAWVFSAFGFVQKIATFEKASGYQALIQ 189
Query: 145 YQLRPSAVVARSSLQ--GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK 202
+ +A A+++L G +D C L I +S L V + + RSRD+TNP LP
Sbjct: 190 FCDTETASSAKAALDVIGFQKFDVPCLLRINYSAHTVLNVKFQSHRSRDYTNPYLPVA-- 247
Query: 203 GRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDE-DK 261
+A G P G + +L S N + D
Sbjct: 248 ------------------------PSAIDGSGPDGKKQEAESNVLLASVENMQYVVTIDV 283
Query: 262 LFNLFSLYGNIIRIKLL-RNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFS 317
L +FS +G + +I + +N AL+Q D A A L+G ++ +L + FS
Sbjct: 284 LHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGGYCKLHLTFS 343
Query: 318 KH 319
+H
Sbjct: 344 RH 345
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 123/253 (48%), Gaps = 41/253 (16%)
Query: 19 ENDLLQLFQPFGVITKLVMLRAKN--QALLQMQD------VPSAINALQFYTNVQPTIRG 70
E + +F FG + K+ + QAL+Q D +A++ + F P +
Sbjct: 159 EWKVAWVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDVIGFQKFDVPCLLR 218
Query: 71 RN------VYVQFSSHQE-------LTTMEQNAQGRGDEPNR------ILLVTIHHMLYP 111
N + V+F SH+ L G G + + +LL ++ +M Y
Sbjct: 219 INYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSGPDGKKQEAESNVLLASVENMQYV 278
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC-CQL 170
+T++VLH+VFS GFV+KI F+K++GFQALIQY +AV A+ +L+G +IY+G C+L
Sbjct: 279 VTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGGYCKL 338
Query: 171 DIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----QSGYSEAGVAFPQMANAAAI 226
+ FS +L V NNER RD+T N A +PS Q YS A P A A +
Sbjct: 339 HLTFSRHTDLNVKVNNERGRDYTGGNT-APTSNQPSILGPQPVYSGAYNNAPSSATGAVV 397
Query: 227 AAAFGGGLPPGIT 239
PPG T
Sbjct: 398 --------PPGTT 402
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K+IHL LP D TEEE+V G +VNTK + QA V F + QA
Sbjct: 8 FRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFADQNQAI 67
Query: 407 EALVCKHASSLGGSIIR 423
A++ ASS + +R
Sbjct: 68 -AMISYFASSAEPAQVR 83
>gi|66816231|ref|XP_642125.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60470245|gb|EAL68225.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 530
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 1/191 (0%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS VIH R + + +++ D+ L PFG + + ++R QAL++M + ++ + +
Sbjct: 40 EPSPVIHCRGLPYSVTDADIHALLSPFGKVEAVCLMRM-GQALIEMDSIQTSTSIISLSI 98
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
+ + + +S Q L ++N I+L TI + +YPIT +H + S
Sbjct: 99 TKPFILHNQKILFAYSKSQHLNNSKKNQPIAQTGSQNIILCTILNPIYPITTNTIHNIMS 158
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P+G V +IV FQK +G Q +++ SA A+ SL G++IY+G C+L I+F+ + +L V
Sbjct: 159 PYGRVIRIVIFQKKSGLQTFVEFDSPYSAWAAKESLNGQDIYNGGCKLQIEFARVSKLNV 218
Query: 183 NYNNERSRDFT 193
N++++ D+T
Sbjct: 219 KQNDDKTADYT 229
>gi|56755920|gb|AAW26138.1| unknown [Schistosoma japonicum]
Length = 219
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 113/206 (54%), Gaps = 12/206 (5%)
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 291
G PP N ++VSNLN DR+ D LF LF +YG++ R+K++ NK D AL+Q D
Sbjct: 16 GVRPP--PNNNGSTVLIVSNLNEDRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFTD 73
Query: 292 GFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAA 344
QA A+ FL G L+ K +++ S+H NI T+ T +Y NS L+RF + +
Sbjct: 74 PHQALTALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRKPNS 132
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
KN++ P+ ++HLS +P VTE +I G V F M K ALV ET +
Sbjct: 133 KNFQNIYPPSHVLHLSNIPPSVTENDIRVLFATKGFEVTGFRF-MKDNKMALVQLETVDL 191
Query: 405 ATEALVCKHASSLG-GSIIRISFSQL 429
A ++L+ H S L S +RISF ++
Sbjct: 192 AIQSLIELHNSQLTENSHLRISFIKI 217
>gi|313228979|emb|CBY18131.1| unnamed protein product [Oikopleura dioica]
Length = 409
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 177/374 (47%), Gaps = 51/374 (13%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
I+L+TI + YPIT VLH+ + G +++IV F+K QA+I++ A+ A++ L
Sbjct: 38 IVLLTIRNPFYPITTSVLHKAAARFGDIKRIVIFKKKF-LQAMIEFSDIKMAIQAKAGLH 96
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT-----------------NPNLP---- 198
G++IY GCC + +++ ++L V N++ + D++ P +P
Sbjct: 97 GQDIYSGCCSIKCEYARTEKLNVYKNDDTTWDYSVSSQGQVQKKPCGLLGDRPIIPNGAP 156
Query: 199 --AEQKGRPSQSG---YSEAGVAFPQMANAAAIAAAFGGGL---PPGITGTNDRCTVLVS 250
AE++ P Q Y++A P A F G P + T+ V+V
Sbjct: 157 FNAERESVPPQVPFPVYNDAHGYPPPRGMAPVDTQGFNQGFERYPQEVCTTS---VVMVY 213
Query: 251 NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK 310
++ D ++ +LFNL +YGN++++K LR+K + A+VQ+GD + L G+ LF
Sbjct: 214 GVD-DNMNCQRLFNLLCVYGNVLKVKFLRSKNNTAMVQLGDPQAVDRCCQLLTGSRLFEN 272
Query: 311 RLEVNFSKHPNITQGADTHEYMNSNLNRF-NRNAAKNYRYCC----------SPTKMIHL 359
L + SK ++ + +N F + ++++N+R+ P K +H
Sbjct: 273 LLTLAPSKQLHLVDTSSAIFDLNDGSPSFADFSSSRNHRFTSQKMAAMNRTQKPNKSLHY 332
Query: 360 STLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKK----QALVLFETEEQATEALV-CKH 413
P + E +I + E+ +IV K+F K ++ F E+A +ALV H
Sbjct: 333 YNAPMEFAENDIQEICDNENLNIVQIKVFPPKDSKMKTSSGIIEFANTEEAIKALVLLNH 392
Query: 414 ASSLGGSIIRISFS 427
G ++++ FS
Sbjct: 393 LELEGRQMLKLCFS 406
>gi|312378791|gb|EFR25262.1| hypothetical protein AND_09562 [Anopheles darlingi]
Length = 399
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 75/107 (70%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN +L V + +LYP++++VLHQ+F G V KIVTF K+ FQALIQY +A A+
Sbjct: 161 PNTVLRVIVESLLYPVSLDVLHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAQTAQTAKQ 220
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
SL G+NIY+GCC L I S L L V YNN++SRD+TNP+LP+ + G
Sbjct: 221 SLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDYTNPSLPSGEPG 267
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+RN+ +E SE +++ L PFG +T +++L+ KNQA ++M D +A + +
Sbjct: 8 SRVVHIRNIPNESSEVEIMHLGLPFGRVTNVLVLKGKNQAFIEMADESAASAMVSMFHAN 67
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQN 89
P +RGR VYVQ+S+H+EL ++QN
Sbjct: 68 PPFVRGRTVYVQYSNHREL-KIDQN 91
>gi|256076159|ref|XP_002574381.1| polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 639
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 9/196 (4%)
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
T ++VSNLN +++ D LF LF +YG++ R+K++ NK ALVQ D QA A++
Sbjct: 442 TGASTVLIVSNLNEEKVYPDALFTLFGVYGDVTRVKIMFNKKSTALVQFSDPQQALTALY 501
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L++ S+ NI Q T +Y NS L+RF + +KN+ +P
Sbjct: 502 HLNGQPLYGKPLKIAVSRF-NIVQLPKEDNDVGLTKDYTNSPLHRFRKPNSKNFTNIYAP 560
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
++HLS +P +TEEE+ E G V F M KK AL+ E + A +AL+ H
Sbjct: 561 NHVLHLSNIPSAITEEEVRMIFETKGYHVTDFKFMMKDKKMALIQLENVDMAIQALIDLH 620
Query: 414 ASSLG-GSIIRISFSQ 428
L S +RISFS+
Sbjct: 621 NCQLTENSHLRISFSK 636
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + A+ + Y
Sbjct: 88 PSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYLK 147
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLVTI 105
T+ G+++ QFS+H L + +N + PN +L V I
Sbjct: 148 YPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVI 207
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+++ I +L+++F G + +++ F ++ ++ L+++Q A VA L G+NIY
Sbjct: 208 DNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIY 267
Query: 165 DGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
GCC L ++F L+V N++ RD+T
Sbjct: 268 TGCCSLQVEFWKARGPLEVRRENDKCRDYT 297
>gi|47198889|emb|CAF88128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 217
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 88/144 (61%), Gaps = 7/144 (4%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L V + ++ YP+T++VLHQ+FS G V KI+TF K+ FQALIQY +A A+ SL
Sbjct: 22 VLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADSMTAQHAKLSLD 81
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ 219
G+NIY+ CC L I FS L L V YNN++SRD+T P+LP +PS + A AF Q
Sbjct: 82 GQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTA-DAQPSIDPQTMAAAAFGQ 140
Query: 220 MANAAAI----AAAFGG--GLPPG 237
AAA A+ +GG PP
Sbjct: 141 CLVAAAPGIISASPYGGAHAFPPA 164
>gi|449687307|ref|XP_002155274.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Hydra
magnipapillata]
Length = 759
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKV+H R V E DL+Q+ +PFG I L ++ QAL++ +++ SAI A Y
Sbjct: 140 PSKVVHCRAVADGCKETDLVQIMRPFGSIRALTLMPKLRQALVEYEELESAI-ACVTYAQ 198
Query: 64 VQPT-IRGRNVYVQFSSHQELTTMEQNAQGR-GDEPNRILLVTIHHMLYPITVEVLHQVF 121
+QP I GR +YV +S E+ N+ G P ILL TI + ++P+ VE + ++
Sbjct: 199 IQPVLILGRQMYVNYSKSTEINRDFSNSNASVGQAPTNILLFTIINAIHPVNVETVKKIC 258
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
H V++IV F K+ G QAL+++ A + +L G +I+ GCC L I FS L
Sbjct: 259 LQHAEVQRIVIFHKN-GLQALVEFLSVDDAQRIQQALNGCDIFAGCCTLKIDFSKTGRLN 317
Query: 182 VNYNNERSRDFTNPNLPAEQKGRP----SQSGYSEAGVAFPQMANAAAIAAAFG 231
V+ N + D + E++ R S SE F Q AA+A+AF
Sbjct: 318 VHANTTETYD-----IEIEKRKRGGSLLSLINNSETSPMFAQ----AAMASAFS 362
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
C +V +N ++++ D LFNLF LYGN++++K L NKP A++Q D ++++ L
Sbjct: 486 CVAMVYGVNHEKMNCDHLFNLFCLYGNVVKVKTLVNKPGSAMIQYTDKVSTDISIRNLNN 545
Query: 305 ALLFGKRLEVNFSKHPNITQGADTH----------EYMNSNLNRFN--RNAAKNYRYCCS 352
LFG++ +++FSKHP I + Y +S NRF +
Sbjct: 546 LTLFGQKFQLSFSKHPFIADSSQVTPLFDGSPSAVSYADSRNNRFKFIPGGVDVFSRIHP 605
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQA--LVLFETEEQATEA 408
P+K++H P D TE+++ + G + K F + K + L+ F + A EA
Sbjct: 606 PSKVLHYFNAPPDCTEDQLNKVFQMLGCEIPIKQATFSKSNMKSSSGLIEFTSVPAAVEA 665
Query: 409 LV 410
L+
Sbjct: 666 LI 667
>gi|47209150|emb|CAF89890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 569
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 24/166 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +I+E ++L L PFG ++KL+ L+AKNQ L+M +AI + +YT+
Sbjct: 6 PSRVLHLRQLPFDITEQEVLALALPFGRVSKLITLKAKNQGFLEMASEEAAITMMNYYTS 65
Query: 64 VQPTIRGRNVYVQFSSHQELTT----------------------MEQNAQGRGD--EPNR 99
PTIR + V++Q+S+H+EL T M GRG +
Sbjct: 66 APPTIRNQPVFIQYSTHRELKTDNLTNQRAALQAISTASMHSGSMAAGGDGRGGVHAQSP 125
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
+L + + ++ YP+++EVL Q+FS G V KI+TF ++ FQAL+Q+
Sbjct: 126 VLRIIVENLFYPVSLEVLQQIFSKFGSVLKIITFTRNNQFQALLQF 171
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 11/177 (6%)
Query: 263 FNLFS-LYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
F +FS +YG++ R+K+L NK ++ALVQM D QA+LA+ L G L G + V SKHP
Sbjct: 390 FGVFSGVYGDVQRVKILFNKKENALVQMSDATQAQLAMSHLNGQRLHGNVIRVMLSKHPV 449
Query: 322 I---------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ + A T ++ S+L+RF + +KN+ P+ +HLS +P V+EE++
Sbjct: 450 VQLPRGGAGQEEQALTRDFSGSSLHRFKKPGSKNFNNIFPPSATLHLSNIPSSVSEEDLK 509
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
G V F +K AL+ + E+A EAL+ H L +R+SFS+
Sbjct: 510 DLFSSTGFTVKAFKFFQKDRKMALMQLASVEEAIEALIALHDHLLDHNQHLRVSFSK 566
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
R C P++++HL LP D+TE+E+++ G + +KL + K Q + +EE A
Sbjct: 1 RAQCVPSRVLHLRQLPFDITEQEVLALALPFGRV--SKLITLKAKNQGFLEMASEEAA 56
>gi|82794317|ref|XP_728389.1| neural polypyrimidine tract binding protein [Plasmodium yoelii
yoelii 17XNL]
gi|23484718|gb|EAA19954.1| neural polypyrimidine tract binding protein [Plasmodium yoelii
yoelii]
Length = 387
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 9/217 (4%)
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTF-QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166
M YP+ +E+++ +FS G VEKI+T +K++ FQAL+Q + A A +L RNIYDG
Sbjct: 1 MQYPVDIELIYYLFSKCGIVEKIITISKKTSIFQALVQLESIEVAKEAIKTLHNRNIYDG 60
Query: 167 CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV--AFPQMANAA 224
C L IQ+S L EL + NN ++ D+T N QK + + S GV P+
Sbjct: 61 CNTLQIQYSFLKELIIKNNNSQAWDYTISN---PQKNKNNFSFQMSHGVLPTPPRNIKET 117
Query: 225 AIAAAFGGGLP--PGITGTNDRCTVLVS-NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK 281
+ G T + VL+ N+ + D +KLFNLFS+YG + RIK+LR K
Sbjct: 118 ELYKLLGRKFKIVDFETKNASKTPVLICYNIPKEYSDVNKLFNLFSIYGYVSRIKILREK 177
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
PD AL+Q + + +A L+ A + LE++FSK
Sbjct: 178 PDSALIQYSNYLFSSMAQECLQHAKICQNILELHFSK 214
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQ--ALVLFETEEQATE 407
C PTK + +S + ++VTEE I++ ++ I K + GKK A + +E+ AT+
Sbjct: 303 CRPTKTLFISNVSEEVTEECIIALFNKYDEINKFKSQPIKEGKKNFTATIEMSSEDTATK 362
Query: 408 ALVCKHASSLGGSIIRISFSQ 428
AL+ H L +++SF++
Sbjct: 363 ALMDLHNFQLKDRCMKVSFTK 383
>gi|308509766|ref|XP_003117066.1| CRE-PTB-1 protein [Caenorhabditis remanei]
gi|308241980|gb|EFO85932.1| CRE-PTB-1 protein [Caenorhabditis remanei]
Length = 436
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 76/108 (70%)
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G +PN +L I +M++P+++EVLHQ+F+ G V +I+TF K+ FQAL+Q SA
Sbjct: 43 GTQQQPNSVLRTIIENMMFPVSLEVLHQLFARFGKVLRIITFSKNNTFQALVQMSEANSA 102
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
+A+ L+ +N+Y+GCC L I +S L L V YNN++SRD+TNPNLPA
Sbjct: 103 QLAKQGLENQNVYNGCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPA 150
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LVSNL+ ++ D LF LF +YG+++R+K+L NK D+AL+Q + QA+LA+ L
Sbjct: 244 ILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVK 303
Query: 307 LFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ + V SKH N+ + T +Y +S L+RF + +KNY P +HL
Sbjct: 304 WHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHL 363
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG- 418
S +P V+E+++ E G V F K AL E E A +AL+ H L
Sbjct: 364 SNIPTSVSEDKLKEMFAEAGYAVKAFKFFPKDHKMALCQMEDIETAIDALIKMHNHKLAE 423
Query: 419 GSIIRISFSQ 428
+ +R+SFS+
Sbjct: 424 NAHLRVSFSK 433
>gi|358332176|dbj|GAA36554.2| polypyrimidine tract-binding protein 1 [Clonorchis sinensis]
Length = 543
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 120/210 (57%), Gaps = 20/210 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVRN+ +++EN++ L PFG+I +V+ + NQAL++M+ + A+ + +Y
Sbjct: 8 PSRVIHVRNMPSDVNENEIALLAIPFGLIKNMVLSKKNNQALIEMEVLEDAMQLVTYYCK 67
Query: 64 VQPTIRGRNVYVQFSSHQ--ELTT---------------MEQNAQG-RGDEPNRILLVTI 105
+ G+N+ +QFS+H ELTT ++Q+ G + PN +L + I
Sbjct: 68 YPVMLHGKNIILQFSTHTHLELTTENNAIENAVKNANRIVQQDLSGVQAGAPNSVLRIVI 127
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+++ I +L+++F G + +++ F +S +Q ++++Q A VA L G+NIY
Sbjct: 128 DNIMGQQINHVILYKIFHRFGKILRVLIFLRSNQYQCMLEFQNHIQAFVAMLHLNGQNIY 187
Query: 165 DGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
GCC L ++FS L+V N++ RD+T
Sbjct: 188 TGCCSLRVEFSRTRGPLEVRRENDKCRDYT 217
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 108/198 (54%), Gaps = 12/198 (6%)
Query: 203 GRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 262
G P + + PQM A+ AF GG T T ++VSNLN D++ D L
Sbjct: 331 GTPLGASPGIPAMPTPQML-PTALPQAFTGG---NQTSTPSSTVLIVSNLNEDKVYPDAL 386
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
F LF +YG++ R+K++ NK D ALVQ D QA A+++L G L+GK L++ S+ N+
Sbjct: 387 FTLFGVYGDVNRVKIMFNKKDTALVQFTDPQQAVTALYYLNGQPLWGKPLKIAVSRF-NV 445
Query: 323 TQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
Q T +Y NS L+RF + +KN++ +P+ ++HLS +P ++TEEEI
Sbjct: 446 VQMPKEDTDVGLTKDYANSPLHRFRKPHSKNFQNIYAPSNVLHLSNIPPNITEEEIRVLF 505
Query: 376 EEHGSIVNTKLFEMNGKK 393
E G V+ F M K+
Sbjct: 506 ESKGYEVSGFKFMMYVKR 523
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV-- 410
P+++IH+ +P DV E EI G I N L + N QAL+ E E A + +
Sbjct: 8 PSRVIHVRNMPSDVNENEIALLAIPFGLIKNMVLSKKN--NQALIEMEVLEDAMQLVTYY 65
Query: 411 CKHASSLGGSIIRISFS 427
CK+ L G I + FS
Sbjct: 66 CKYPVMLHGKNIILQFS 82
>gi|74193172|dbj|BAE20599.1| unnamed protein product [Mus musculus]
gi|74193487|dbj|BAE20681.1| unnamed protein product [Mus musculus]
gi|74193495|dbj|BAE20685.1| unnamed protein product [Mus musculus]
Length = 241
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 99/171 (57%), Gaps = 31/171 (18%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225
>gi|149025820|gb|EDL82063.1| polypyrimidine tract binding protein 2, isoform CRA_c [Rattus
norvegicus]
Length = 243
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 99/171 (57%), Gaps = 31/171 (18%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225
>gi|344255742|gb|EGW11846.1| Polypyrimidine tract-binding protein 2 [Cricetulus griseus]
Length = 212
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 27/169 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 85
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 86 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 145
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 194
>gi|119581560|gb|EAW61156.1| polypyrimidine tract binding protein 1, isoform CRA_e [Homo
sapiens]
Length = 197
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 10/186 (5%)
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
+ + R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK
Sbjct: 10 VGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 69
Query: 312 LEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
+ + SKH N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P
Sbjct: 70 IRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 128
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSII 422
V+EE++ +G +V F +K AL+ + E+A +AL+ H LG +
Sbjct: 129 PSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 188
Query: 423 RISFSQ 428
R+SFS+
Sbjct: 189 RVSFSK 194
>gi|158519869|ref|NP_001103551.1| polypyrimidine tract-binding protein 2 [Bos taurus]
gi|158455056|gb|AAI22581.1| PTBP2 protein [Bos taurus]
Length = 255
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 27/169 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225
>gi|13435822|gb|AAH04763.1| Hnrpll protein, partial [Mus musculus]
Length = 340
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 51/317 (16%)
Query: 138 GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL 197
G QA+++++ A A+++L G +IY GCC L I+++ L V N+ S D+T P L
Sbjct: 3 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 62
Query: 198 PAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN-----------AAAIA 227
+G+ Q GY G P +M + A +
Sbjct: 63 GRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASS 122
Query: 228 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287
+ GG P G V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV
Sbjct: 123 SYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALV 175
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH-EYMNSNLNR 338
+MGD + E AV L LFGKRL V SK ++ G ++ ++ S NR
Sbjct: 176 EMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNR 235
Query: 339 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGKKQ-- 394
F + P+ ++H +P VTEE +H + + K+F+ +
Sbjct: 236 FTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIKYKVFDAKASAKTL 295
Query: 395 -ALVLFETEEQATEALV 410
L+ ++ + A EAL
Sbjct: 296 SGLLEWKCKTDAVEALT 312
>gi|148700268|gb|EDL32215.1| mCG50057 [Mus musculus]
Length = 253
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 34/189 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA +M +A + +YT+
Sbjct: 67 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFTEMNTEETANTMVNYYTS 126
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 127 VAPVLRGQPIYIQFSNHKELETDSSPNQARAQAALQAVNSVHSGNLALAASAAAVDAGMA 186
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P L + + ++ YP+T++++HQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 187 MAGQSP--ALRIIVENLFYPVTLDMVHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 244
Query: 152 VVARSSLQG 160
A+ SL G
Sbjct: 245 QHAKLSLDG 253
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 42 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 99
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA TEE A + A L G I I FS + + +S
Sbjct: 100 MLKGKNQAFTEMNTEETANTMVNYYTSVAPVLRGQPIYIQFSNHKELETDS 150
>gi|345786845|ref|XP_868626.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Canis
lupus familiaris]
Length = 197
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 10/186 (5%)
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
+ + R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK
Sbjct: 10 VGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKP 69
Query: 312 LEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
+ + SKH N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P
Sbjct: 70 VRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 128
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSII 422
V+E+++ +G IV F +K AL+ + E+A +AL+ H LG +
Sbjct: 129 PSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHL 188
Query: 423 RISFSQ 428
R+SFS+
Sbjct: 189 RVSFSK 194
>gi|417398360|gb|JAA46213.1| Putative heteroproteinous nuclear ribonucleoprotein l [Desmodus
rotundus]
Length = 285
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 113/196 (57%), Gaps = 9/196 (4%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E L + I+ ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEAHLXXTLEKSPTISYVMMMPFKRQALVEFENMDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 249 VIRNDNDSWDYTKPYL 264
>gi|356531752|ref|XP_003534440.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 467
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 157/336 (46%), Gaps = 71/336 (21%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQ 119
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI +
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGV----------- 119
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
AG ALIQ+ +A AR +L GR+I + G C L I
Sbjct: 120 ----------------EAG-DALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLRI 162
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
+S +L + + + RSRD+TNP LP N AI A
Sbjct: 163 SYSAHKDLNIKFQSNRSRDYTNPMLP----------------------VNYTAIEGAVQT 200
Query: 233 GLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 201 AVGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQY 260
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 261 PDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDL 296
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 5/136 (3%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY +
Sbjct: 206 GKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIIT 265
Query: 151 AVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFT--NPNLPAEQKGRPSQ 207
A AR +L+G IYDG C+L + +S +L V +++SRD+T +P+L A Q G P+
Sbjct: 266 ASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQ-GPPTA 324
Query: 208 SGYSEAGVAFPQMANA 223
+A +P A A
Sbjct: 325 WQNPQAASMYPGSAPA 340
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ + G I+NTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|417408450|gb|JAA50776.1| Putative polypyrimidine tract-binding protein, partial [Desmodus
rotundus]
Length = 185
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 104/182 (57%), Gaps = 10/182 (5%)
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + +
Sbjct: 2 RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRIT 61
Query: 316 FSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
SKH N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+
Sbjct: 62 LSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 120
Query: 368 EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISF 426
E+++ +G +V F +K AL+ + E+A +AL+ H LG +R+SF
Sbjct: 121 EDDLKILFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSF 180
Query: 427 SQ 428
S+
Sbjct: 181 SK 182
>gi|90075792|dbj|BAE87576.1| unnamed protein product [Macaca fascicularis]
Length = 226
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 27/168 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALKLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+Q
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQ 224
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALKLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>gi|186509647|ref|NP_001118547.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
gi|332640096|gb|AEE73617.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
Length = 370
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 81/341 (23%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQ 119
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LL
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLL----------------- 113
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
VTF+ +AL+Q+ +A ARS+L GR+I + G C L +
Sbjct: 114 -----------VTFEGVESHEALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 162
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
+S +L + + + RSRD+TNP LP Q A G
Sbjct: 163 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQ--------------------------TAMDG 196
Query: 233 GLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPDH 284
+ P + + L+ N+ + D L +FS YG + +I + +N
Sbjct: 197 SMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGSTQ 255
Query: 285 ALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 256 ALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 296
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 8/137 (5%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+A +A+ +L+
Sbjct: 215 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 274
Query: 160 GRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRPSQSGYS-EAGV 215
G IYD G C+L + +S +L V +++SRD+T P+L QKG P+ SG + AG
Sbjct: 275 GHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG-PAVSGSAPPAGW 333
Query: 216 AFPQMANAAAIAAAFGG 232
PQ A + + +GG
Sbjct: 334 QNPQ---AQSQYSGYGG 347
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
>gi|225452861|ref|XP_002283752.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 2
[Vitis vinifera]
Length = 420
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 159/336 (47%), Gaps = 71/336 (21%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQ 119
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI +
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDVPGNVLLVTIEGV----------- 119
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
AG ALIQ+ +A AR++L GR+I + G C L I
Sbjct: 120 ----------------EAG-DALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRI 162
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
+S +L + + + RSRD+TNP LP N AI
Sbjct: 163 SYSAHTDLNIKFQSHRSRDYTNPYLP----------------------VNPTAIEGIAQP 200
Query: 233 GLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
L P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 201 ALGPDGKKKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQY 260
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A +A L+G ++ +L +++S+H ++
Sbjct: 261 PDVTTAAVAKEALEGHCIYDGGYCKLHLSYSRHTDL 296
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +
Sbjct: 206 GKKKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTT 265
Query: 151 AVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
A VA+ +L+G IYDG C+L + +S +L V +++RSRD+T P+
Sbjct: 266 AAVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDRSRDYTIPD 312
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + TEEE+V + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEFLDLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNN 101
>gi|402594034|gb|EJW87961.1| hypothetical protein WUBG_01127 [Wuchereria bancrofti]
Length = 608
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVRN+ + +E DLL+ FG I+ + K AL++ ++V A + + +
Sbjct: 32 DPSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPGKRMALVEFEEVEGARSCVVYAQ 91
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
Q + G+ +S+ + M Q + PN +L++TI++ YPI V+V+HQ+
Sbjct: 92 TNQIYVAGQAALFNYST----SKMIQRLGLESETPNHVLILTIYNAQYPINVDVIHQICE 147
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
HGFV +I +++ QAL++++ A A+ ++ G +IY GCC L ++F+ + ++V
Sbjct: 148 LHGFVRRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADIYSGCCTLKVEFAKPEHVKV 206
Query: 183 NYNNERSRDFT 193
N+ D+T
Sbjct: 207 TRNDSDQWDYT 217
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D +++ ++ D + DKLFNL LYGN +IK +++K D A+ Q+G Q + L
Sbjct: 394 DGPVMMIYGIDQDNFNCDKLFNLLCLYGNCNKIKFMKSKTDTAMAQLGSVRQVYTTIDNL 453
Query: 303 KGALLFGKRLEVNFSKHPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCS 352
G ++FG +L + SK + + D +Y NS R+
Sbjct: 454 HGTMIFGNKLALRPSKQQILHEIRDPFILPDGTPSYRDYTNSRNQRYTTPELAARNRIVK 513
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G++ K +F ++ + + F E+ATEA
Sbjct: 514 PTHVLHWYNAPVTMTEEKLKELFVDKGAVAPDKVVIFPQRSERSSAGICEFPNTERATEA 573
Query: 409 LVCKH----ASSLGGS--IIRISFS 427
L+ + S +G + I++++F+
Sbjct: 574 LMLANHTPVESPVGKAPYIVKLAFA 598
>gi|170582502|ref|XP_001896158.1| hypothetical protein [Brugia malayi]
gi|158596691|gb|EDP34993.1| conserved hypothetical protein [Brugia malayi]
Length = 643
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVRN+ + +E DLL+ FG I+ + K AL++ ++V A + + +
Sbjct: 447 DPSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPGKRMALVEFEEVEGARSCVVYAQ 506
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
Q + G+ +S+ + M Q + PN +L++TI++ YPI V+V+HQ+
Sbjct: 507 TNQIYVAGQAALFNYST----SKMIQRLGLESETPNHVLILTIYNAQYPINVDVIHQICE 562
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
HGFV +I +++ QAL++++ A A+ ++ G +IY GCC L ++F+ + ++V
Sbjct: 563 LHGFVRRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADIYSGCCTLKVEFAKPEHVKV 621
Query: 183 NYNNERSRDFT 193
N+ D+T
Sbjct: 622 TRNDSDQWDYT 632
>gi|170576159|ref|XP_001893522.1| RNA binding protein [Brugia malayi]
gi|158600425|gb|EDP37644.1| RNA binding protein, putative [Brugia malayi]
Length = 659
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVRN+ + +E DLL+ FG I+ + K AL++ ++V A + + +
Sbjct: 32 DPSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPGKRMALVEFEEVEGARSCVVYAQ 91
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
Q + G+ +S+ + M Q + PN +L++TI++ YPI V+V+HQ+
Sbjct: 92 TNQIYVAGQAALFNYST----SKMIQRLGLESETPNHVLILTIYNAQYPINVDVIHQICE 147
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
HGFV +I +++ QAL++++ A A+ ++ G +IY GCC L ++F+ + ++V
Sbjct: 148 LHGFVRRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADIYSGCCTLKVEFAKPEHVKV 206
Query: 183 NYNNERSRDFT 193
N+ D+T
Sbjct: 207 TRNDSDQWDYT 217
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D +++ ++ D + DKLFNL LYGN +IK +++K D A+ Q+G Q + L
Sbjct: 445 DGPVMMIYGIDQDNFNCDKLFNLLCLYGNCNKIKFMKSKTDTAMAQLGSVRQVYTTIDNL 504
Query: 303 KGALLFGKRLEVNFSKHPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCS 352
G ++FG +L + SK + + D +Y NS R+
Sbjct: 505 HGTMIFGNKLALRPSKQQILHEIRDPFILPDGTPSYRDYTNSRNQRYTTPELAARNRIVK 564
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G++ K +F ++ + + F E+ATEA
Sbjct: 565 PTHVLHWYNAPVTMTEEKLKELFVDKGAVAPDKVVIFPQRSERSSAGICEFSNTERATEA 624
Query: 409 LVCKH----ASSLGGS--IIRISFS 427
L+ + S +G + I++++F+
Sbjct: 625 LMLANHTPVESPVGKAPYIVKLAFA 649
>gi|356568678|ref|XP_003552537.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 467
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 157/336 (46%), Gaps = 71/336 (21%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E SE +L +L +PFG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQ 119
++ +P +RG+ VY+Q+S+ E+ N + GD P +LLVTI +
Sbjct: 75 ASSSEPAMVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLLVTIEGV----------- 119
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
AG ALIQ+ +A AR +L GR+I + G C L I
Sbjct: 120 ----------------EAG-DALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLRI 162
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
+S +L + + + RSRD+TNP LP N AI A
Sbjct: 163 SYSAHKDLNIKFQSNRSRDYTNPMLP----------------------VNYTAIEGAVQT 200
Query: 233 GLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQM 289
+ P VL++++ + + + D L +FS +G + +I + +N AL+Q
Sbjct: 201 AVGPDGKRKEPDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQY 260
Query: 290 GDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
D A A L+G ++ +L +++S+H ++
Sbjct: 261 PDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDL 296
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 92 GRGDEPNR-ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP+ +LL +I +M Y +TV+VLH VFS G V+KI F+K+ QALIQY +
Sbjct: 206 GKRKEPDSNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIIT 265
Query: 151 AVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
A AR +L+G IYDG C+L + +S +L V +++SRD+T P+
Sbjct: 266 ASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPD 312
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+ G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAI 68
Query: 407 EALVCKHASSLGGSIIR 423
++V +ASS +++R
Sbjct: 69 -SMVSYYASSSEPAMVR 84
>gi|55669744|pdb|1SJR|A Chain A, Nmr Structure Of Rrm2 From Human Polypyrimidine Tract
Binding Protein Isoform 1 (Ptb1)
Length = 164
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 42 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 99
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+
Sbjct: 100 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS 145
>gi|355714179|gb|AES04920.1| polypyrimidine tract binding protein 1 [Mustela putorius furo]
Length = 181
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH N
Sbjct: 5 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQN 64
Query: 322 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+E+++
Sbjct: 65 VQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKI 123
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G IV F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 124 LFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 179
>gi|358341535|dbj|GAA29842.2| polypyrimidine tract-binding protein 1, partial [Clonorchis
sinensis]
Length = 520
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
N ++VSNLN +R+ D LF LF +YG++ R+K++ NK D AL+Q D QA A+ F
Sbjct: 346 NGGTVLIVSNLNEERVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFADAQQASTALQF 405
Query: 302 LKGALLFGKRLEVNFSKHPNITQ-------GADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
L G L+GK +++ S+H N+ Q T +Y S L+RF + +KN+ P+
Sbjct: 406 LSGQRLWGKPMKIAVSRH-NVVQLPREEPENGLTKDYSTSLLHRFRKPNSKNFLNIYPPS 464
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
+++HLS +P + EE+I G V+ F ++ ALV E+ + A +AL+
Sbjct: 465 QILHLSNIPPTIAEEDIRLLFAAKGFDVSGFRFLQKDRRMALVQLESVDTAIQALI 520
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 32/186 (17%)
Query: 48 MQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQ---------------- 91
MQ + SAI + +Y Q T+RGR + +QFS HQ L M +N+Q
Sbjct: 1 MQSLDSAIQMVSYYREYQVTLRGRTLIMQFSKHQHLELMSENSQIVEAINNANCIVQQDL 60
Query: 92 --GRGDEPNRILLVTIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
PN +L V I +++ I +LH++F +G + +I+TF K+ + LI+++
Sbjct: 61 SGANSGVPNSVLRVIIDYIMGQQINHTILHKIFYRYGKILRIITFPKNNQYHGLIEFENH 120
Query: 149 PSAVVA---------RSS---LQGRNIYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNP 195
A VA R S L G+NIY GCC L ++FS N L+V + +++ RD+ N
Sbjct: 121 IHAFVAMLVSVGLTKRHSPKHLNGQNIYTGCCSLLVEFSKNRGPLEVRHESDKCRDYINN 180
Query: 196 NLPAEQ 201
L E+
Sbjct: 181 PLTEEE 186
>gi|393907053|gb|EJD74501.1| serologically defined colon cancer antigen 1 [Loa loa]
Length = 1568
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS V+HVRN+ + +E DLL+ FG I+ + K AL++ ++V A + + +
Sbjct: 960 DPSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPGKRMALVEFEEVEGARSCVVYAQ 1019
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
Q + G+ +S+ + + Q + PN +L++TI++ YPI V+V+HQ+
Sbjct: 1020 TNQIYVAGQAALFNYSTSKII----QRLGLESESPNHVLILTIYNAQYPINVDVIHQICE 1075
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
HGFV++I +++ QAL++++ A A+ ++ G +IY GCC L ++F+ + ++V
Sbjct: 1076 LHGFVKRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADIYSGCCTLKVEFAKPEHVKV 1134
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
N+ D+T A Q G + YS
Sbjct: 1135 TRNDNDQWDYTK----APQSGDCKVTRYS 1159
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D +++ ++ D + DKLFNL LYGN +IK +++K D A+ QMG Q + L
Sbjct: 1354 DGPVMMIYGIDQDNFNCDKLFNLLCLYGNCNKIKFMKSKTDTAMAQMGSVRQVYTTIDNL 1413
Query: 303 KGALLFGKRLEVNFSKHPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCS 352
G ++FG +L + SK + + D +Y NS R+
Sbjct: 1414 HGTIIFGNKLALRPSKQQILHEIRDPFILPDGTPSYRDYTNSRNQRYTTPELAARNRIVK 1473
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G+I K +F ++ + + F E+ATEA
Sbjct: 1474 PTHVLHWYNAPVTMTEEKLKDLFVDKGAITPDKVVIFPQRSERSSAGICEFPNTERATEA 1533
Query: 409 LVCKH----ASSLGGS--IIRISFS 427
L+ + S +G + I++++F+
Sbjct: 1534 LMLANHTPVESPVGKAPYIVKLAFA 1558
>gi|159163719|pdb|2ADB|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd2 Complexed With Cucucu Rna
Length = 148
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Query: 86 MEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
M+ G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 21 MDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 78
Query: 146 QLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+
Sbjct: 79 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS 132
>gi|226489713|emb|CAX75007.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 583
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 112/199 (56%), Gaps = 19/199 (9%)
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 307
VSNLN+++++ D LF LF +YG+++R+K+L NK ALVQ D QA AV+FL G L
Sbjct: 383 FVSNLNTEKVNPDTLFILFGVYGDVLRVKILHNKRSTALVQFTDSTQALRAVNFLNGVSL 442
Query: 308 FGKRLEVNFSKHP----------NITQGAD-----THEYMNSNLNRFNRNAAKNYRYCCS 352
+GK + SK+ N+T + T +Y L+RF R ++N+ C+
Sbjct: 443 YGKIIRCVLSKNSFINMPPTNLQNLTPDGENEIKTTCDYTGHKLHRFRRANSRNHFNICA 502
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+K++H++ LP+ ++++ + S E H + K F+ KK AL+ F + A AL+
Sbjct: 503 PSKVLHITNLPESISDDTLKSVFENHTDCQVCRVKSFKAE-KKMALMEFANLDDAISALI 561
Query: 411 CKHASSLGGSI-IRISFSQ 428
H + ++ IR+SFS+
Sbjct: 562 AMHNYPIEENMHIRVSFSK 580
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+R + ++SE+++ L PFG I +++ R QAL++M + SA + +Y V
Sbjct: 42 SRVLHLRGLPPDVSESEVAMLAIPFGSIANMILTRKSCQALVEMDTLESAESMFGYYMTV 101
Query: 65 -QPTIRGR-NVYVQFSSHQELTTM-----------EQNAQ------GRGDEPNRILLVTI 105
P +RG+ + +QFS + LT E N Q D P +L + +
Sbjct: 102 CTPNLRGKYPIEMQFSKYSSLTNATTNNATLSAIEEANKQFVTFRCENEDSPKTVLHIHV 161
Query: 106 HHMLYPITVEVL--HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
P+ + L F P G + ++V+F+K+ A +++ SA A+ + G +
Sbjct: 162 EKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHGAKLLMNGVPL 221
Query: 164 YDGCCQLDI---QFSNLDELQVNYNNERSRDFT-NP 195
+ I +FS L+++ + SRDF NP
Sbjct: 222 FPMEYNFHILRTEFSRQSTLEIHREDNSSRDFVQNP 257
>gi|390341476|ref|XP_785931.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Strongylocentrotus purpuratus]
Length = 570
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 11/205 (5%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HV N+ +S+ DL++ QPFG I+ V K QAL++ +++ S+ + ++F T
Sbjct: 62 PSCVVHVSNLSENVSDADLVEALQPFGPIS-FVHRIQKGQALVEFEEMKSSKSCVEF-TQ 119
Query: 64 VQP----TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQ 119
P + G+ + +S+ + +N E N +LL+T+ Y IT +V+H
Sbjct: 120 AHPDNIINVGGKPAFFDYSNSARIIRPGEN----DSEANNVLLMTVVRPKYRITTDVIHT 175
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDE 179
+ G V +IV F+K+ G QA++++ SA A+ +L +IY GCC L I F+
Sbjct: 176 ICKGFGNVLRIVIFKKN-GVQAMVEFDTVQSATHAKQNLHNCDIYSGCCTLKIDFARPKT 234
Query: 180 LQVNYNNERSRDFTNPNLPAEQKGR 204
L V N+ + D+TNP L A +GR
Sbjct: 235 LTVYKNDGETYDYTNPGLNAAAQGR 259
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V+V N+N +++ DKLFNL LYGN+I++K +++KP A+ +M D E A+ L
Sbjct: 356 VMVYNMNPGQMNCDKLFNLLCLYGNVIKVKFMKSKPGCAMAEMSDALSVERAITNLSNIE 415
Query: 307 LFGKRLEVNFSKHPNIT----------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
FG ++++FSK + +Y S NRF A + P+K+
Sbjct: 416 FFGSAVQLSFSKQNCVALSQVPGELHDGSPSCMDYTKSRNNRFRNKEAASKNRIQQPSKV 475
Query: 357 IHL-----STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----------ALVLFET 401
+H + PQ + + I + +E ++ K+F+ + Q L +
Sbjct: 476 LHFFNAHPESTPQTIKQVFINAGAKEPTAV---KMFDQKSRVQDSSKADRSRTGLAEWND 532
Query: 402 EEQATEALVCKHASSL---GGS---IIRISFS 427
A EAL + +++ GG I ++ FS
Sbjct: 533 RASAVEALCVANHTNMENPGGKWPYIFKLCFS 564
>gi|365813382|pdb|3ZZY|A Chain A, Crystal Structure Of A Raver1 Pri3 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
gi|365813383|pdb|3ZZY|B Chain B, Crystal Structure Of A Raver1 Pri3 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
gi|365813386|pdb|3ZZZ|A Chain A, Crystal Structure Of A Raver1 Pri4 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
gi|365813387|pdb|3ZZZ|B Chain B, Crystal Structure Of A Raver1 Pri4 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
Length = 130
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 24 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 81
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+
Sbjct: 82 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS 127
>gi|119601315|gb|EAW80909.1| hCG41678, isoform CRA_b [Homo sapiens]
Length = 446
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 38/309 (12%)
Query: 16 EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75
++ E +++ L PFG +T L+ML+ KNQA ++M A N + + ++ N+
Sbjct: 172 DVIEGEVISLELPFGKVTNLLMLKGKNQAFIKM-STEEAANTMAVNS-----VQSGNLAW 225
Query: 76 QFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK 135
+ M Q + +L + + ++ YP T++VLHQ+FS G V K +TF K
Sbjct: 226 TAPAAAVDAGMAMAGQ------SLVLRIIVENLFYPTTLDVLHQIFSKFGTV-KTITFIK 278
Query: 136 SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNP 195
FQAL+QY +A + SL +N Y+ C L I FS L L V YNN++SRD+
Sbjct: 279 DNQFQALLQYTDPENAQHTKLSLDWQNTYNACHTLCIDFSKLISLNVKYNNDKSRDYHAR 338
Query: 196 NLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP--PGITGTNDRCTVLVSNLN 253
P G A P+ F P PG +
Sbjct: 339 TCP--------------PGTASPRWTRHGRGLRPFSSQHPRSPGPPAIPSAVAAAAAAGQ 384
Query: 254 SDRIDEDKLFNLFSLYGN--IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
+ + GN ++R+K+ NK ++ALVQM DG QA+LA+ L L GK
Sbjct: 385 IAILG-------LAGTGNSVLLRVKIPFNKKENALVQMADGNQAQLAMSHLNWHKLHGKP 437
Query: 312 LEVNFSKHP 320
+ ++ P
Sbjct: 438 IRISSVSRP 446
>gi|165940573|gb|ABY75231.1| polypyrimidine tract-binding protein-like protein [Salvia
officinalis]
Length = 181
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 12/139 (8%)
Query: 68 IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQVFSPHGF 126
IRG+ VY+Q+S+ E+ N + GD P +LLVTI + ++++V+H VFS GF
Sbjct: 9 IRGKTVYIQYSNRHEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGF 64
Query: 127 VEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDIQFSNLDE 179
V KI TF+K+AGFQALIQY +A AR SL GR+I + C L I +S +
Sbjct: 65 VHKIATFEKAAGFQALIQYSDVQTASTARDSLDGRSIPRYLLPSHVSECYLRISYSAHTD 124
Query: 180 LQVNYNNERSRDFTNPNLP 198
L + + + RSRD+TNP+LP
Sbjct: 125 LNIKFQSHRSRDYTNPHLP 143
>gi|256077594|ref|XP_002575087.1| polypyrimidine tract binding protein [Schistosoma mansoni]
gi|360045192|emb|CCD82740.1| putative polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 584
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 115/200 (57%), Gaps = 21/200 (10%)
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 307
VSNLN+++++ D LF LF +YG++ R+K+L NK ALVQ D QA AV+FL G L
Sbjct: 384 FVSNLNTEKVNPDTLFILFGVYGDVQRVKILHNKRSTALVQFTDANQALRAVNFLNGIPL 443
Query: 308 FGKRLEVNFSKHP----------NITQGAD-----THEYMNSNLNRFNRNAAKNYRYCCS 352
+GK + SK+P N+T + T +Y L+RF R ++N+ C+
Sbjct: 444 YGKIIHCVLSKNPTVNMPHTNLQNLTSDGENDIKTTCDYTGHKLHRFKRVNSRNHFNICA 503
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMNGKKQALVLFETEEQATEAL 409
P+K++H++ LP + ++ + S + E+G+ + K F+ + KK AL+ F E+A AL
Sbjct: 504 PSKVLHVTNLPDSIDDDSLKS-VFENGTDCHVTRIKSFKAD-KKMALIEFANLEEAVSAL 561
Query: 410 VCKHASSLGGSI-IRISFSQ 428
+ H + ++ IR+SFS+
Sbjct: 562 IAMHDYPIEENMHIRVSFSK 581
>gi|328792476|ref|XP_003251730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Apis
mellifera]
Length = 394
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 155/367 (42%), Gaps = 77/367 (20%)
Query: 142 LIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL---- 197
+I + SA A+ +L G +IY GCC L I F+ +L V N+ S D+T P L
Sbjct: 1 MITFDSVESATRAKETLHGADIYSGCCTLKIDFAKPTKLNVYKNDAESWDYTTPTLGSSA 60
Query: 198 ---PAEQKGRPS------------QSGYSEAGVAFPQMA---------NAAA-------- 225
A GRP+ Q S V FP A N A
Sbjct: 61 HKNDATGNGRPAPLLAEPRYGAAPQPYGSTPQVTFPPGAGHDRYEENFNGPATYAEPYVE 120
Query: 226 ---IAAAFGGGLP-------PGITGT--------NDRCTVLVSNLNSDRIDEDKLFNLFS 267
I + F G P PG T ++V L D+++ DKLFNLF
Sbjct: 121 RYGIKSDFSGREPLHPTPPRPGYVPTLGQTPPSSTQGSVMMVYGLQPDKVNTDKLFNLFC 180
Query: 268 LYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK-------- 318
LYGN+ ++K L+ K A++QMGD E + L + RL++ FSK
Sbjct: 181 LYGNVTKVKFLKTKEGCAMIQMGDSIAVERCLQNLNNVTIGTDGRLQLGFSKQAFLSDVT 240
Query: 319 HPNI--TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 376
+P I + A ++ S NRF A N P+K++H P D+TEE +
Sbjct: 241 NPYILPDKTASFKDFTGSKNNRFLNPAMANKNRIQPPSKIVHFFNTPPDLTEETVHRVFV 300
Query: 377 EHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS------IIRIS 425
E G + KLF + ++ + L+ F + A A++ C H ++L S I+++
Sbjct: 301 ERGIEAPTTVKLFPLKSERSSSGLIEFSSVGIAVAAIMECNH-TALENSNGKFPYIMKLC 359
Query: 426 FSQLQSI 432
FS ++I
Sbjct: 360 FSSSRTI 366
>gi|224118028|ref|XP_002317715.1| predicted protein [Populus trichocarpa]
gi|222858388|gb|EEE95935.1| predicted protein [Populus trichocarpa]
Length = 285
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 62/75 (82%)
Query: 16 EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75
+ISE DL Q+FQ F +I KLV+L KN A LQ+QDV S INALQ+YT+VQ TIRGR+VYV
Sbjct: 4 DISEIDLFQMFQSFRIIMKLVILHDKNHAFLQIQDVISTINALQYYTSVQLTIRGRSVYV 63
Query: 76 QFSSHQELTTMEQNA 90
QFSSHQELTTM+QN
Sbjct: 64 QFSSHQELTTMDQNT 78
>gi|61806703|ref|NP_001013580.1| uncharacterized protein LOC541437 [Danio rerio]
gi|60649696|gb|AAH90482.1| Zgc:113074 [Danio rerio]
gi|182889494|gb|AAI65254.1| Zgc:113074 protein [Danio rerio]
Length = 183
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF LF +YG++ R+K+L NK D AL+QM D QA+LA+ L G +F K + V SKH
Sbjct: 7 LFTLFGVYGDVQRVKILFNKKDSALIQMADMNQAQLAMSHLNGQKMFSKIIRVTMSKHQT 66
Query: 322 ITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 374
+ D T ++ NS L+RF + +KN++ P+ +HLS +PQDVTEE++
Sbjct: 67 VQLPRDGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPQDVTEEDLRVL 126
Query: 375 LEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
G V K F+ K AL+ T E+A + L+ H ++G + +++SFS+
Sbjct: 127 FSNSGGTVKAFKFFQ--DHKMALIQMSTIEEAIQCLIDLHNYNMGNNHHLKVSFSK 180
>gi|308502740|ref|XP_003113554.1| hypothetical protein CRE_26483 [Caenorhabditis remanei]
gi|308263513|gb|EFP07466.1| hypothetical protein CRE_26483 [Caenorhabditis remanei]
Length = 602
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/469 (23%), Positives = 196/469 (41%), Gaps = 70/469 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG + + AL++ +D+ A + F +
Sbjct: 32 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFAAS 91
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
+ G+ +S+ Q + M + PN++L+VT+ + YP+ +V++Q+ +
Sbjct: 92 NSINVGGQAALFNYSTSQCIERMGFESA----IPNKVLVVTVLNAQYPVDADVIYQISNA 147
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL------ 177
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ +
Sbjct: 148 QGRVLRVAVMHKPTIVQALVEFESMEIAKAAKHAMNGADIYSGCCTLKVEFAKVCGLFFF 207
Query: 178 ----------DELQVNYNNERSRDFT-----------------NPNLPAEQKGRP---SQ 207
D ++V ++ RDFT P+ P + RP +
Sbjct: 208 LNHHCIRFQPDRVRVTRQDKDQRDFTIPENETPQPDNTTRKTLIPSRPDDHYRRPYEDER 267
Query: 208 SGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRC----TVLVSNLNSDRIDEDKLF 263
+ + P G PP G DR + N + R
Sbjct: 268 NNPYDRRDYPPPPPPPQQYGYPPRGDGPPEYYG--DRGGPPQSRYRDNYDDRRGGPIGGA 325
Query: 264 NLFSLYGNII------RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE---- 313
S+ +II +I +R K + +++MG + + FL+G FG +LE
Sbjct: 326 GGPSIVFSIICPLPVFQISFMRTKTETGIIEMGTPDERHNVLDFLQGFECFGLKLEFKPS 385
Query: 314 ----VNFSKHP-NITQGADT-HEYMNSNLNRFNRN--AAKNYRYCCSPTKMIHLSTLPQD 365
V++ + P + G + +Y S RF AAKN PTK++H P
Sbjct: 386 HQECVHYLRDPFQLPDGTPSFKDYSTSRNQRFTTPELAAKN--RIIFPTKILHWFNAPGT 443
Query: 366 VTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
+ E++++ + E V ++F ++ + V FET E A E L
Sbjct: 444 MDEKKLLDMIAERSQHKAVKVEIFPTRNERSSAGTVEFETVEAANEVLC 492
>gi|442756297|gb|JAA70308.1| Putative polypyrimidine tract-binding protein [Ixodes ricinus]
Length = 184
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 8/180 (4%)
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
+ D LF LF +YG++IR+K+L NK D AL+QM + QA+LA+ L + GK + V
Sbjct: 2 VTPDALFTLFGVYGDVIRVKILFNKKDSALIQMAEPQQAQLAMSHLDKIKVHGKPVRVTP 61
Query: 317 SKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
SKH + D T +Y++S L+RF + +KNY+ P+ +HLS +P V+EE
Sbjct: 62 SKHHIVQLPKDGQPDAGLTKDYISSPLHRFKKPGSKNYQNIYPPSGTLHLSNIPPTVSEE 121
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+I + G V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 122 QIREAFTQTGGTVVAFKFFPKDRKMALIQMSSIEEAVTALIKMHNYQLSDSNHLRVSFSK 181
>gi|344251032|gb|EGW07136.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 323
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 82/128 (64%), Gaps = 3/128 (2%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA A+ SL
Sbjct: 178 VLRILVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVSAQHAKLSLD 237
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSGYSEAGVAF 217
G+NIY C L I FS L L V YNN++SRD+T P+LP+ +PS Q+ + G++
Sbjct: 238 GQNIYKAWCSLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGD-SQPSLDQTMAAAFGLSV 296
Query: 218 PQMANAAA 225
P + A A
Sbjct: 297 PNVHRAEA 304
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
PS+VIHVR++ +++E++++ L PFG +T L+ML+ KNQA ++M +A + +Y
Sbjct: 56 PSRVIHVRSLPSDVTEDEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYY 113
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ +LP DVTE+E++S G + N L
Sbjct: 31 MSSSTSAANGNDSKKFKGDNRSTGVPSRVIHVRSLPSDVTEDEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQA 405
+ GK QA + TEE A
Sbjct: 89 MLKGKNQAFIEMNTEEAA 106
>gi|345330029|ref|XP_003431460.1| PREDICTED: regulator of differentiation 1-like [Ornithorhynchus
anatinus]
Length = 670
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 98/171 (57%), Gaps = 29/171 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + ++++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 55 PSRVLHLRKIPNDVTETEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 114
Query: 64 VQPTIRGRNVYVQFSSHQELTT-------------MEQNAQGRGDEP------------- 97
V P +R + V++Q+S+H+EL T NA G P
Sbjct: 115 VTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVNAVQSGSLPTLTAAPAGDSGLL 174
Query: 98 ---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
+ +L + + ++ YP+T+EVL+Q+F G V KI+TF K+ FQAL+Q+
Sbjct: 175 PGQSSVLRIIVENLFYPVTLEVLYQIFFKFGTVLKIITFTKNNQFQALLQF 225
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316
I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L
Sbjct: 488 ITPQGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATL 547
Query: 317 SKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
S+H ++ +G + T +Y NS L+RF + +KN++ P+ +HLS +P VT +
Sbjct: 548 SRHQSVQLPREGQEDQGLTKDYSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVD 607
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
++ + + G V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 608 DLKNLFADAGCTVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 667
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R CSP++++HL +P DVTE E++S G + N L + GK QA + +EE
Sbjct: 47 KGDRTPCSPSRVLHLRKIPNDVTETEVISLGLPFGKVTN--LLMLKGKSQAFLEMASEEA 104
Query: 405 A 405
A
Sbjct: 105 A 105
>gi|301777342|ref|XP_002924098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Ailuropoda melanoleuca]
Length = 281
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 101 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 160
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 161 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++++ F++++ A A+++L G +IY GCC L I+++ L
Sbjct: 216 NPVGKVQQLM-------FESVL------CAQKAKAALNGADIYAGCCTLKIEYARPTRLN 262
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 263 VIRNDNDSWDYTKPYL 278
>gi|383856703|ref|XP_003703847.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Megachile rotundata]
Length = 421
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 153/359 (42%), Gaps = 77/359 (21%)
Query: 150 SAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL-------PAEQK 202
SA A+ +L G +IY GCC L I F+ +L V N+ S D+T P L A
Sbjct: 36 SATRAKETLHGADIYSGCCTLKIDFAKPTKLNVYKNDAESWDYTTPTLGSSAHKNDATGN 95
Query: 203 GRPS------------QSGYSEAGVAFPQMA---------NAAA-----------IAAAF 230
GRP+ Q S V FP A N A I + F
Sbjct: 96 GRPAPLLAEPRYGAAPQPYGSTPQVTFPPGAGHDRYEENFNGPATYAEPYVERYGIKSDF 155
Query: 231 GGGLP-----------PGITGTNDRCT----VLVSNLNSDRIDEDKLFNLFSLYGNIIRI 275
G P P + T T ++V L D+++ DKLFNLF LYGN+ ++
Sbjct: 156 SGREPLHPTPPRPNYVPTLGQTPPSSTQGSVMMVYGLQPDKVNTDKLFNLFCLYGNVTKV 215
Query: 276 KLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEVNFSK--------HPNI--TQ 324
K L+ K A++QMGD E + L + RL++ FSK +P I +
Sbjct: 216 KFLKTKEGCAMIQMGDSIAVERCLQNLNNVTIGTDGRLQLGFSKQAFLSDVTNPYILPDK 275
Query: 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIV 382
A ++ S NRF A N P+K++H P D+TEE + E G +
Sbjct: 276 TASFKDFTGSKNNRFLNPAMANKNRIQPPSKIVHFFNTPPDLTEETVHRVFVERGIEAPT 335
Query: 383 NTKLFEMNGKKQA--LVLFETEEQATEALV-CKHASSLGGS------IIRISFSQLQSI 432
KLF + ++ + L+ F + A A++ C H ++L S I+++ FS ++I
Sbjct: 336 TVKLFPLKSERSSSGLIEFSSVGIAVAAIMECNH-TALENSNGKFPYIMKLCFSSSRTI 393
>gi|307694571|gb|ADN84938.1| hephaestus [Biston betularia]
Length = 181
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 40/174 (22%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +E +E +++QL PFG +T +++L+ KNQA L+M + SA+ + ++
Sbjct: 9 KPSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKGKNQAFLEMAEEISAVAMVAYFG 68
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-----------------------------------ME 87
+RGR VYVQFS+H+EL T
Sbjct: 69 GCVAQLRGRAVYVQFSNHKELKTDQTHSNASASAQAALQAAQAISNSAGAALVAGAGAAL 128
Query: 88 QNAQGRGDE----PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA 137
Q A G G E PN +L V I HMLYPI ++VL+ +F +G V KIVTF K++
Sbjct: 129 QPANG-GTEIQGGPNTVLRVIIEHMLYPIVLDVLYSIFQRYGKVLKIVTFTKNS 181
>gi|391333478|ref|XP_003741140.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Metaseiulus occidentalis]
Length = 485
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 124/254 (48%), Gaps = 46/254 (18%)
Query: 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPG 237
+ LQ ERS DF +P + + G P G++ + M N
Sbjct: 217 ETLQYERRGERSEDFGSPPVGGPRSGAP---GFNSLPLP---MQNVG------------- 257
Query: 238 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL 297
C ++V L + RI+ LFNLF LYGN+IR+K L++KP A+VQMGDG E
Sbjct: 258 -------CVLMVYGL-APRINTSHLFNLFCLYGNVIRVKFLKSKPGCAMVQMGDGPSVER 309
Query: 298 AVHFLKGALLFGKRLEVNFSKHPNI---TQGADTH-------EYMNSNLNRFNRN--AAK 345
AV + A++F + ++VNFSK P + + D H E+ S NRF AAK
Sbjct: 310 AVQNVHNAVIFDQTIQVNFSKQPFLHEEVKAYDLHDGTPSFREFSKSRNNRFTNTELAAK 369
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFE-MNGKKQALVL-FET 401
N P+ +H P D++EE + ++ TK +FE N K Q +L FET
Sbjct: 370 N--RIRPPSNTLHFFNAPNDISEERLKDVFKKEDLTPPTKITMFENKNLKSQTGMLEFET 427
Query: 402 EEQATEALV-CKHA 414
+Q+TEALV C HA
Sbjct: 428 IQQSTEALVICNHA 441
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN I+L+TI + LYPI VEV++++ G V++IV F+K+ G QAL++++ A A+
Sbjct: 21 KPNHIVLMTIRNALYPIDVEVIYKISHTLGRVQRIVIFRKN-GVQALVEFENVDQATRAK 79
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT 193
+ L G +IY GCC L ++++ +L V N++ + D+T
Sbjct: 80 NELDGADIYQGCCTLKLEYAKPSKLNVYKNDKDTWDYT 117
>gi|146076563|ref|XP_001462957.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|398009965|ref|XP_003858181.1| RNA-binding protein, putative [Leishmania donovani]
gi|134067038|emb|CAM65144.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|322496386|emb|CBZ31457.1| RNA-binding protein, putative [Leishmania donovani]
Length = 311
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 48/253 (18%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S VIH+RNV E+++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 82 SSVIHMRNVTPEVTQLSIQNLAQNFGDIKHIVMLRQMNQALIEMKSPKSAEQLVDFFK-- 139
Query: 65 QP---TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
+P I GR VY++FS+HQ LT + R LLV++ + Y IT E
Sbjct: 140 EPGYAEIDGRRVYIRFSTHQNLTATQHAT--------RTLLVSMFNTQYDVSAAAHITPE 191
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F+ +G VE+IV K+ QAL+Q+ R SA ++ LQG+ + G
Sbjct: 192 IVYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQPVTLGET 251
Query: 167 -CCQLDIQFSNLDELQVNYNNERSRDFTNP--NLPAEQKGRPSQSGYSEAGVAFPQMANA 223
LDIQFS +DE++ TNP +L + +G + AG P NA
Sbjct: 252 ITFTLDIQFSRMDEIKT----------TNPTTSLVVDDEG-----AHRPAGTMDPMAMNA 296
Query: 224 AAIAAAFGGGLPP 236
AA+ G PP
Sbjct: 297 AAMTTT--GMYPP 307
>gi|76363834|ref|XP_888628.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|12311843|emb|CAC22661.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 311
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 48/253 (18%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S VIH+RNV E+++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 82 SSVIHMRNVTPEVTQLSIQNLAQNFGDIKHIVMLRQMNQALIEMKSPKSAEQLVDFFK-- 139
Query: 65 QP---TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
+P I GR VY++FS+HQ LT + R LLV++ + Y IT E
Sbjct: 140 EPGYAEIDGRRVYIRFSTHQNLTATQHAT--------RTLLVSMFNTQYDVSAAAHITPE 191
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F+ +G VE+IV K+ QAL+Q+ R SA ++ LQG+ + G
Sbjct: 192 IVYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQPVTLGET 251
Query: 167 -CCQLDIQFSNLDELQVNYNNERSRDFTNP--NLPAEQKGRPSQSGYSEAGVAFPQMANA 223
LDIQFS +DE++ TNP +L + +G + AG P NA
Sbjct: 252 ITFTLDIQFSRMDEIKT----------TNPTTSLVVDDEG-----AHRPAGTMDPVAMNA 296
Query: 224 AAIAAAFGGGLPP 236
AA+ G PP
Sbjct: 297 AAMTTT--GMYPP 307
>gi|194375115|dbj|BAG62670.1| unnamed protein product [Homo sapiens]
Length = 179
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 97/160 (60%), Gaps = 3/160 (1%)
Query: 41 KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRI 100
K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++ + R N +
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSV 61
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA A++SL G
Sbjct: 62 LLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNG 120
Query: 161 RNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE 200
+IY GCC L I+++ L V N++ + D+TNPNL +
Sbjct: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQ 160
>gi|154331968|ref|XP_001561801.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059121|emb|CAM41596.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 315
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 125/243 (51%), Gaps = 46/243 (18%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S VIH+RNV E+++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 86 SSVIHMRNVTPEVTQLSIQNLAQNFGDIKHIVMLRQMNQALIEMKSPKSAEQLVDFFK-- 143
Query: 65 QP---TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
+P I GR VY++FS+HQ LT + R LLV++ + Y IT E
Sbjct: 144 EPGYAEIDGRRVYIRFSTHQNLTATQHAT--------RTLLVSMFNTQYDVSTAAHITPE 195
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F+ +G VE+IV K+ QAL+Q+ R SA ++ LQG+ + G
Sbjct: 196 IVYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQPVTLGET 255
Query: 167 -CCQLDIQFSNLDELQVNYNNERSRDFTNP--NLPAEQKGRPSQSGYSEAGVAFPQMANA 223
LDIQFS +DE++ TNP +L + +G + AG P NA
Sbjct: 256 ITFTLDIQFSRMDEIKT----------TNPTTSLVVDDEG-----AHRPAGTMDPMAMNA 300
Query: 224 AAI 226
AA+
Sbjct: 301 AAM 303
>gi|410931471|ref|XP_003979119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Takifugu rubripes]
Length = 182
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 9/175 (5%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + + E DL+ + FG I ++M+ K QAL++ ++ SA +
Sbjct: 13 PSPVVHVRGLCEAVVEADLIDALEKFGPICYVMMMPFKRQALVEFSELQSADRCVSCGAK 72
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQV 120
I G+ Y +S+ + +T NA D P N++LL++I + LYPIT +VL+ V
Sbjct: 73 EPVYIAGQQAYFNYSTSKRITR-PTNA----DNPNSGNKVLLLSIQNPLYPITTDVLYTV 127
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
+P G V +IV F+++ G QA+++++ A A+++L G +IY GCC L I+++
Sbjct: 128 CNPIGNVLRIVIFKRN-GIQAMVEFESVHCAQKAKAALNGADIYAGCCTLKIEYA 181
>gi|74222755|dbj|BAE42243.1| unnamed protein product [Mus musculus]
Length = 172
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 104/172 (60%), Gaps = 11/172 (6%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+M+ K QAL++ +++ SA + F +V I G+ + +S+ + +T G D
Sbjct: 1 MMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR-----PGNTD 55
Query: 96 EP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ A
Sbjct: 56 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQ 114
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
A+++L G +IY GCC L I+++ L V N+ S D+T P L ++GR
Sbjct: 115 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL--GRRGR 164
>gi|355714185|gb|AES04922.1| polypyrimidine tract binding protein 2 [Mustela putorius furo]
Length = 172
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 8/169 (4%)
Query: 268 LYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQ 324
+YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +
Sbjct: 2 VYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPRE 61
Query: 325 GAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS 380
G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G
Sbjct: 62 GLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGG 121
Query: 381 IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
V F K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 122 TVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 170
>gi|312090405|ref|XP_003146603.1| hypothetical protein LOAG_11032 [Loa loa]
Length = 184
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
++ D LF LF +YG++ R+K+L NK D+AL+Q + QA+LA+ L K++ V
Sbjct: 1 KVTPDALFTLFGVYGDVHRVKILFNKKDNALIQYAEPQQAQLAIQHLDKVRWHDKQIRVA 60
Query: 316 FSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368
SKH N+ + T +Y S+L+RF + +KNY P+ +HLS +P ++TE
Sbjct: 61 SSKHSNVQMPKEGQPDAGLTRDYSQSSLHRFKKPGSKNYLNIYPPSSTLHLSNIPPNITE 120
Query: 369 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFS 427
E + S E+ G I F K AL+ E A AL+ H L + +R+SFS
Sbjct: 121 EFLTSAFEQRGYIPKGFKFFPKDHKMALLQLNDMETAINALIEMHNFKLAENAHLRVSFS 180
Query: 428 Q 428
+
Sbjct: 181 K 181
>gi|401414770|ref|XP_003871882.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488102|emb|CBZ23349.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 301
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 29/197 (14%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S VIH+RNV E+++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 72 SSVIHMRNVTPEVTQLSIQNLAQNFGDIKHIVMLRQMNQALIEMKSPKSAEQLVDFFK-- 129
Query: 65 QP---TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
+P I GR VY++FS+HQ LT + R LLV++ + Y IT E
Sbjct: 130 EPGYAEIDGRRVYIRFSTHQNLTATQHAT--------RTLLVSMFNTQYDVSAAAHITPE 181
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F+ +G VE+IV K+ QAL+Q+ R SA ++ LQG+ + G
Sbjct: 182 IVYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQPVTLGET 241
Query: 167 -CCQLDIQFSNLDELQV 182
LDIQFS +DE++
Sbjct: 242 ITFTLDIQFSRMDEIKT 258
>gi|350644874|emb|CCD60410.1| polypyrimidine tract binding protein, putative [Schistosoma
mansoni]
Length = 427
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + A+ + Y
Sbjct: 51 SPSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYL 110
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQN------------------AQGRGDEPNRILLVT 104
T+ G+++ QFS+H L + +N + PN +L V
Sbjct: 111 KYPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVV 170
Query: 105 IHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
I +++ I +L+++F G + +++ F ++ ++ L+++Q A VA L G+NI
Sbjct: 171 IDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNI 230
Query: 164 YDGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
Y GCC L ++F L+V N++ RD+T
Sbjct: 231 YTGCCSLQVEFWKARGPLEVRRENDKCRDYT 261
>gi|350644875|emb|CCD60411.1| polypyrimidine tract binding protein, putative [Schistosoma
mansoni]
Length = 592
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + A+ + Y
Sbjct: 52 PSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYLK 111
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLVTI 105
T+ G+++ QFS+H L + +N + PN +L V I
Sbjct: 112 YPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVI 171
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+++ I +L+++F G + +++ F ++ ++ L+++Q A VA L G+NIY
Sbjct: 172 DNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIY 231
Query: 165 DGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
GCC L ++F L+V N++ RD+T
Sbjct: 232 TGCCSLQVEFWKARGPLEVRRENDKCRDYT 261
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
T ++VSNLN + + YG++ R+K++ NK ALVQ D QA A++
Sbjct: 406 TGASTVLIVSNLNEEGV-----------YGDVTRVKIMFNKKSTALVQFSDPQQALTALY 454
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L++ S+ NI Q T +Y NS L+RF + +KN+ +P
Sbjct: 455 HLNGQPLYGKPLKIAVSRF-NIVQLPKEDNDVGLTKDYTNSPLHRFRKPNSKNFTNIYAP 513
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
++HLS +P +TEEE+ E G V F M KK AL+ E + A +AL+ H
Sbjct: 514 NHVLHLSNIPSAITEEEVRMIFETKGYHVTDFKFMMKDKKMALIQLENVDMAIQALIDLH 573
Query: 414 ASSLG-GSIIRISFSQ 428
L S +RISFS+
Sbjct: 574 NCQLTENSHLRISFSK 589
>gi|256076161|ref|XP_002574382.1| polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 463
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 20/210 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + A+ + Y
Sbjct: 88 PSRVIHIRNMPGDATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEEAVQLVAHYLK 147
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQN------------------AQGRGDEPNRILLVTI 105
T+ G+++ QFS+H L + +N + PN +L V I
Sbjct: 148 YPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVI 207
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+++ I +L+++F G + +++ F ++ ++ L+++Q A VA L G+NIY
Sbjct: 208 DNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIY 267
Query: 165 DGCCQLDIQFSNL-DELQVNYNNERSRDFT 193
GCC L ++F L+V N++ RD+T
Sbjct: 268 TGCCSLQVEFWKARGPLEVRRENDKCRDYT 297
>gi|207174028|gb|ACI23510.1| putative polypyrimidine tract-binding protein 2 [Triticum
monococcum]
gi|207174032|gb|ACI23512.1| putative polypyrimidine tract-binding protein 2 [Triticum urartu]
Length = 200
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 89/144 (61%), Gaps = 8/144 (5%)
Query: 91 QGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRP 149
G+ +EP + +LL ++ +M Y +T++ LH+VFS GFV+KI F+K++GF ALIQY
Sbjct: 52 DGKKEEPESNVLLASVENMQYIVTIDALHEVFSAFGFVQKIAIFEKNSGFHALIQYPDIQ 111
Query: 150 SAVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN-LPAEQKGRPSQ 207
+AV AR +L+G +IY+G C+L + FS +L V NNER RD+T N PA + PS
Sbjct: 112 TAVKAREALEGHSIYEGGYCKLHLAFSRHTDLNVRINNERGRDYTGGNSAPANHE--PSI 169
Query: 208 SGYSE---AGVAFPQMANAAAIAA 228
G AG P ++A + AA
Sbjct: 170 LGPQPMLAAGSTAPPYSSAPSTAA 193
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 37/166 (22%)
Query: 165 DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAA 224
DG C L I +S L V + + RSRD+TNP LP +A +A
Sbjct: 7 DGSCTLRINYSAHSVLNVKFQSHRSRDYTNPYLP---------------------LAPSA 45
Query: 225 AIAAAFGGGLPPGITGTND--RCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-R 279
+ G+ G + VL++++ + + + D L +FS +G + +I + +
Sbjct: 46 IDGS--------GVDGKKEEPESNVLLASVENMQYIVTIDALHEVFSAFGFVQKIAIFEK 97
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
N HAL+Q D A A L+G ++ +L + FS+H ++
Sbjct: 98 NSGFHALIQYPDIQTAVKAREALEGHSIYEGGYCKLHLAFSRHTDL 143
>gi|115438631|ref|NP_001043595.1| Os01g0619000 [Oryza sativa Japonica Group]
gi|54290863|dbj|BAD61524.1| polypyrimidine tract-binding protein-like [Oryza sativa Japonica
Group]
gi|113533126|dbj|BAF05509.1| Os01g0619000 [Oryza sativa Japonica Group]
gi|215697045|dbj|BAG91039.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 448
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 14/147 (9%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
+ +LL ++ +M Y +T++VLH+VFS GFV+KI F+K++GFQALIQY +AV A+ +
Sbjct: 130 SNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEA 189
Query: 158 LQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----QSGYSE 212
L+G +IY+G C+L + FS +L V NNER RD+T N A +PS Q YS
Sbjct: 190 LEGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNT-APTSNQPSILGPQPVYSG 248
Query: 213 AGVAFPQMANAAAIAAAFGGGLPPGIT 239
A P A A + PPG T
Sbjct: 249 AYNNAPSSATGAVV--------PPGTT 267
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 38/212 (17%)
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
VFS GFV+KI TF+K++G+QALIQ+ +A A+++L GR I D C L I
Sbjct: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
+S L V + + RSRD+TNP LP +A G
Sbjct: 85 NYSAHTVLNVKFQSHRSRDYTNPYLP--------------------------VAPSAIDG 118
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDE-DKLFNLFSLYGNIIRIKLL-RNKPDHALVQMG 290
P G + +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 119 SGPDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYP 178
Query: 291 DGFQAELAVHFLKGALLFGK---RLEVNFSKH 319
D A A L+G ++ +L + FS+H
Sbjct: 179 DIQTAVAAKEALEGHSIYEGGYCKLHLTFSRH 210
>gi|119620775|gb|EAX00370.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_c [Homo
sapiens]
Length = 175
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 102/172 (59%), Gaps = 11/172 (6%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+M+ K QAL++ +++ SA + F + I G+ + +S+ + +T G D
Sbjct: 1 MMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITR-----PGNTD 55
Query: 96 EP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA++ ++ A
Sbjct: 56 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQ 114
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
A+++L G +IY GCC L I+++ L V N+ S D+T P L ++GR
Sbjct: 115 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL--GRRGR 164
>gi|221484270|gb|EEE22566.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
GT1]
gi|221505749|gb|EEE31394.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
VEG]
Length = 446
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 86 MEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG-FQALIQ 144
ME+ E R++L ++ ++LYP+ ++++H +FS +G +EKIVTF KS +QALIQ
Sbjct: 1 MEEKTTTAPPESFRVVLASVTNLLYPVDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQ 60
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
+Q A A +L RNIYDGC L IQ S L+EL V N ++S D+T Q G
Sbjct: 61 FQSPDQARHALMNLHSRNIYDGCNTLQIQPSRLNELVVKNNTQKSWDYT------VQSGG 114
Query: 205 PSQSGYSEAGVAFPQMANAAAIAAAFGGG 233
PS S + + P A AA+ A G
Sbjct: 115 PSGSAGATGDLPPPGQAPGAAVPAGVNNG 143
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 238 ITGTNDRCT--VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
I TN T ++V NL ++ I LFNLFSLYG+++R+K+LR K D AL+Q D A
Sbjct: 234 IESTNPTQTPVIIVYNLPAN-ITVHMLFNLFSLYGSVLRVKILREKSDTALIQYSDPLYA 292
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAA---KNYRY--- 349
+A ++++GA + G+ L+V FSK+ + + + R A K+ RY
Sbjct: 293 TIAHNYIQGANVLGQSLQVGFSKNMEVKLPPPNSQKTEATAEEEKRTVAFSIKDQRYGGD 352
Query: 350 --------CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGKKQALVLF 399
C PTK I ++ L ++ T+EE+ +EHG + K + K + +
Sbjct: 353 DVEKYVKGSCRPTKTIFVANLDENATDEEVQKLFKEHGQVSKFTFKAPKNESAKTQMAMM 412
Query: 400 E--TEEQATEALVCKHASSLGGSIIRISFSQ 428
E TE +A A++ H L G ++++FS+
Sbjct: 413 EMGTEAEAVAAVMYLHNHELHGRSMKVAFSK 443
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 33/230 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
P + ++ ++++ ITV +L +FS +G V ++ ++ + ALIQY A +A +
Sbjct: 239 PTQTPVIIVYNLPANITVHMLFNLFSLYGSVLRVKILREKSD-TALIQYSDPLYATIAHN 297
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+QG N+ Q + FS E+++ N + + T AE++ R VA
Sbjct: 298 YIQGANVLGQSLQ--VGFSKNMEVKLPPPNSQKTEAT-----AEEEKR---------TVA 341
Query: 217 FP---QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
F Q + G P T+ V+NL+ + DE+ + LF +G +
Sbjct: 342 FSIKDQRYGGDDVEKYVKGSCRP-------TKTIFVANLDENATDEE-VQKLFKEHGQVS 393
Query: 274 R--IKLLRN---KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
+ K +N K A+++MG +A AV +L L G+ ++V FSK
Sbjct: 394 KFTFKAPKNESAKTQMAMMEMGTEAEAVAAVMYLHNHELHGRSMKVAFSK 443
>gi|326502954|dbj|BAJ99105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 124/276 (44%), Gaps = 60/276 (21%)
Query: 23 LQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV------- 73
Q+F FG + K+ A QAL+Q D P+A A + + GR++
Sbjct: 7 FQVFSAFGFVHKIATFEKAAGFQALIQYTDPPTASAARE-------ALDGRSIPRYLLPD 59
Query: 74 -------YVQFSSHQELTTMEQNAQGR----------------------GDEPNRI---- 100
+ FS+H++L Q+ + R G + R+
Sbjct: 60 HVVSCHLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDSTLQPAVGADGRRVEAEG 119
Query: 101 --LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158
LL +I +M Y ++V+VLH VFS G V+KI F+K+ G QALIQY +A +A+ +L
Sbjct: 120 NVLLASIENMQYAVSVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDASTATIAKEAL 179
Query: 159 QGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAF 217
+G IYDG C++ + +S +L V ++++S+D+T P Q+ P +G
Sbjct: 180 EGHCIYDGGYCKIHLSYSRHTDLNVKAHSDKSKDYTTPE--GAQQAAPQPAGVP------ 231
Query: 218 PQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLN 253
P A + A G PPG+ N V N N
Sbjct: 232 PTTAGWQGNSQAAGPYGPPGVAVQNQNTNRQVPNWN 267
>gi|237838325|ref|XP_002368460.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
ME49]
gi|211966124|gb|EEB01320.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
ME49]
Length = 446
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 86 MEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG-FQALIQ 144
ME+ E R++L ++ ++LYP+ ++++H +FS +G +EKIVTF KS +QALIQ
Sbjct: 1 MEEKTTTAPPESFRVVLASVTNLLYPVDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQ 60
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
+Q A A +L RNIYDGC L IQ S L+EL V N ++S D+T Q G
Sbjct: 61 FQSPDQARHALMNLHSRNIYDGCNTLQIQPSRLNELVVKNNTQKSWDYT------VQSGG 114
Query: 205 PSQSGYSEAGVAFPQMANAAAIAAAFGGG 233
PS S + + P A AA+ A G
Sbjct: 115 PSGSVGATGDLPPPGQAPGAAVPAGVNNG 143
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 238 ITGTNDRCT--VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
I TN T ++V NL ++ I LFNLFSLYG+++R+K+LR K D AL+Q D A
Sbjct: 234 IESTNPTQTPVIIVYNLPAN-ITVHMLFNLFSLYGSVLRVKILREKSDTALIQYSDPLYA 292
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAA---KNYRY--- 349
+A ++++GA + G+ L+V FSK+ + + + R A K+ RY
Sbjct: 293 TIAHNYIQGANVLGQSLQVGFSKNMEVKLPPPNSQKTEATAEEEKRTVAFSIKDQRYGGD 352
Query: 350 --------CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGKKQALVLF 399
C PTK I ++ L ++ T+EE+ +EHG + K + K + +
Sbjct: 353 DVEKYVKGSCRPTKTIFVANLDENATDEEVQKLFKEHGQVSKFTFKAPKNESAKTQMAMM 412
Query: 400 E--TEEQATEALVCKHASSLGGSIIRISFSQ 428
E TE +A A++ H L G ++++FS+
Sbjct: 413 EMGTEAEAVAAVMYLHNHELHGRSMKVAFSK 443
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 33/230 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
P + ++ ++++ ITV +L +FS +G V ++ ++ + ALIQY A +A +
Sbjct: 239 PTQTPVIIVYNLPANITVHMLFNLFSLYGSVLRVKILREKSD-TALIQYSDPLYATIAHN 297
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+QG N+ Q + FS E+++ N + + T AE++ R VA
Sbjct: 298 YIQGANVLGQSLQ--VGFSKNMEVKLPPPNSQKTEAT-----AEEEKR---------TVA 341
Query: 217 FP---QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
F Q + G P T+ V+NL+ + DE+ + LF +G +
Sbjct: 342 FSIKDQRYGGDDVEKYVKGSCRP-------TKTIFVANLDENATDEE-VQKLFKEHGQVS 393
Query: 274 R--IKLLRN---KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
+ K +N K A+++MG +A AV +L L G+ ++V FSK
Sbjct: 394 KFTFKAPKNESAKTQMAMMEMGTEAEAVAAVMYLHNHELHGRSMKVAFSK 443
>gi|401402366|ref|XP_003881231.1| gg11844, related [Neospora caninum Liverpool]
gi|325115643|emb|CBZ51198.1| gg11844, related [Neospora caninum Liverpool]
Length = 460
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 21/211 (9%)
Query: 238 ITGTNDRCT--VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
I TN T ++V NL ++ I LFNLFSLYG+++R+K+LR K D AL+Q D A
Sbjct: 248 IESTNPTQTPVIIVYNLPAN-ITVQMLFNLFSLYGSVLRVKILREKSDTALIQYSDPLYA 306
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAA---KNYRY--- 349
+A+++++GA + G+ L+V FSK+ + + +N R A K+ RY
Sbjct: 307 TIALNYIQGANVLGQSLQVGFSKNMEVKLPPPNSQKTEANAEEEKRTVAFSIKDQRYGGD 366
Query: 350 --------CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGKKQALVLF 399
C PTK I ++ L + T+EEI +EHG + K + K + +
Sbjct: 367 DVEKYVKGSCRPTKTIFVANLDESATDEEIQKLFKEHGQVSKFTFKAPKNESAKTQMAMM 426
Query: 400 E--TEEQATEALVCKHASSLGGSIIRISFSQ 428
E TE +A A++ H L G ++++FS+
Sbjct: 427 EMGTEAEAVAAVMYLHNHELHGRSMKVAFSK 457
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 7/124 (5%)
Query: 86 MEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG-FQALIQ 144
ME+ + R++L ++ ++LYP+ ++++H +FS +G +EKIVTF KS +QALIQ
Sbjct: 1 MEEKTTAAPPDSFRVVLASVTNLLYPVDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQ 60
Query: 145 YQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGR 204
+Q A A +L RNIYDGC L IQ S L+EL V N ++S D+T Q G
Sbjct: 61 FQNAEQARHALMNLHSRNIYDGCNTLQIQPSRLNELVVKNNTQKSWDYT------VQSGG 114
Query: 205 PSQS 208
PS S
Sbjct: 115 PSGS 118
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
P + ++ ++++ ITV++L +FS +G V ++ ++ + ALIQY A +A +
Sbjct: 253 PTQTPVIIVYNLPANITVQMLFNLFSLYGSVLRVKILREKSD-TALIQYSDPLYATIALN 311
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+QG N+ Q + FS E+++ N + + AE++ R VA
Sbjct: 312 YIQGANVLGQSLQ--VGFSKNMEVKLPPPNSQKTEAN-----AEEEKR---------TVA 355
Query: 217 FP---QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
F Q + G P T+ V+NL+ DE+ + LF +G +
Sbjct: 356 FSIKDQRYGGDDVEKYVKGSCRP-------TKTIFVANLDESATDEE-IQKLFKEHGQVS 407
Query: 274 R--IKLLRN---KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
+ K +N K A+++MG +A AV +L L G+ ++V FSK
Sbjct: 408 KFTFKAPKNESAKTQMAMMEMGTEAEAVAAVMYLHNHELHGRSMKVAFSK 457
>gi|207174026|gb|ACI23509.1| putative polypyrimidine tract-binding protein 2 [Secale cereale]
Length = 200
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+LL ++ +M Y +T++ LH+VFS +GFV+KI F+K++GF ALIQY +AV AR +L+
Sbjct: 62 VLLASVENMQYIVTIDALHEVFSAYGFVQKIAIFEKNSGFHALIQYPDIQTAVKAREALE 121
Query: 160 GRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPN 196
G +IY+G C+L + FS +L V NNER RD+T N
Sbjct: 122 GHSIYEGGYCKLHLAFSRHTDLNVRINNERGRDYTGGN 159
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 37/166 (22%)
Query: 165 DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAA 224
DG C L I +S L V + + RSRD+TNP LP +A +A
Sbjct: 7 DGSCTLRINYSAHSVLNVKFQSHRSRDYTNPYLP---------------------LAPSA 45
Query: 225 AIAAAFGGGLPPGITGTNDRC--TVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-R 279
+ G+ G + VL++++ + + + D L +FS YG + +I + +
Sbjct: 46 IDGS--------GVDGKKEEAESNVLLASVENMQYIVTIDALHEVFSAYGFVQKIAIFEK 97
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
N HAL+Q D A A L+G ++ +L + FS+H ++
Sbjct: 98 NSGFHALIQYPDIQTAVKAREALEGHSIYEGGYCKLHLAFSRHTDL 143
>gi|164519910|gb|ABY59992.1| polypyrimidine tract-binding protein-like protein [Robinia
pseudoacacia]
Length = 240
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
+ +LL +I +M Y +T++VLH VFS G V+KI F K+ G QALIQY +AVVA+ +
Sbjct: 36 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEA 95
Query: 158 LQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSG 209
L+G IYDG C+ I +S +L + NN+RSRD+T PN P +PS SG
Sbjct: 96 LEGHCIYDGGFCKPHISYSRHTDLSIKVNNDRSRDYTIPNTPVV-NAQPSISG 147
>gi|427796049|gb|JAA63476.1| Putative heteroproteinous nuclear ribonucleoprotein l, partial
[Rhipicephalus pulchellus]
Length = 523
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+PN +LL+TI + YPITV+V+H + +P G V +IV F+K+ G QA++++ +AV A+
Sbjct: 113 KPNHVLLMTILNPAYPITVDVIHTICTPSGKVMRIVIFKKN-GVQAMVEFDGVEAAVRAK 171
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSG 209
SL G +IY GCC L I+++ L V N+ S D+TNPNL RP+ G
Sbjct: 172 KSLNGADIYSGCCTLKIEYAKPTRLNVYKNDNDSWDYTNPNLGKSGSERPALLG 225
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
P G + ++V LNS++++ +KLFNL LYGN++RIK L++K A+VQMGD
Sbjct: 306 PQAAGPHQGSVLMVYGLNSEKMNAEKLFNLLCLYGNVVRIKFLKSKDGCAMVQMGDPLAV 365
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHP---------NITQGADT-HEYMNSNLNRFNRNAAK 345
E AV L A F ++++ +SK + G + ++M + NRF A
Sbjct: 366 ERAVGHLNNAQFFDSKMQLGYSKQAFLNDVQLPFELPDGTPSFKDFMGNRNNRFTNPEAA 425
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT--KLFEMNGKKQA--LVLFET 401
+ P++++H P +TE+++ E+ G V T K+F ++ + L+ FET
Sbjct: 426 SKNRIQPPSRVLHFFNTPFGITEDDLKKLFEDLGCPVPTTIKMFTSKTERSSSGLMEFET 485
Query: 402 EEQATEALV 410
+A EAL+
Sbjct: 486 VSEAIEALI 494
>gi|349602796|gb|AEP98824.1| Regulator of differentiation 1-like protein, partial [Equus
caballus]
Length = 173
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 8/169 (4%)
Query: 268 LYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---Q 324
+YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH + +
Sbjct: 2 VYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPRE 61
Query: 325 GAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS 380
G + T ++ NS L+RF + +KN++ P+ +HLS +P VT +++ + E G
Sbjct: 62 GQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGC 121
Query: 381 IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 122 SVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 170
>gi|339233762|ref|XP_003381998.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316979122|gb|EFV61952.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 820
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 123/259 (47%), Gaps = 30/259 (11%)
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSE-AGVAFPQMANAAA---IAAAFGGGLPP 236
Q Y N R D LP + RP + Y + G P+M + + A+ G
Sbjct: 455 QAYYPNRRGGD--GYCLPEDMSPRPGRGYYDDFRGPPDPKMGSYPGYGDVDGAYRGTYDD 512
Query: 237 GIT---GTNDRCTV-LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
+ G + TV ++ L+ ++ DKLFNL LYGN+IRIK L++K D +VQMG+
Sbjct: 513 RMKDDFGMHQESTVIMIYGLDPTSVNCDKLFNLLCLYGNVIRIKFLKSKNDTVMVQMGEP 572
Query: 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE-------YMNSNLNRFNRN--- 342
A + L AL+FGKR+ V S+ + + D E Y + +RF R
Sbjct: 573 IAAGRVIENLHNALVFGKRIHVAMSRQRQLNEVRDPTEMPDGSSSYKDFTGSRFQRFTSP 632
Query: 343 --AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS--IVNTKLF---EMNGKKQA 395
AAKN +P K ++ P +VTEE ++S ++ + N K+F E+
Sbjct: 633 DIAAKN--RITNPQKYLYFFNAPPNVTEERLISLFKDSNAPEPTNVKIFNKKELVKNSAG 690
Query: 396 LVLFETEEQATEAL-VCKH 413
++ FE E ATEAL +C H
Sbjct: 691 IIEFENEAAATEALMLCNH 709
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+ VRN+ + E DL+ PFG+++ V L ++ AL++ + + +A + F
Sbjct: 49 PSRVLLVRNLMDNVVEADLVDALSPFGLVS-YVSLTSRGSALVEFESITAAERCVTFN-- 105
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
+ +L T + P+ +L++ + + YPIT EV+HQ+ P
Sbjct: 106 --------------AVSDQLET---------EAPSNVLIIYVQNAKYPITTEVIHQICKP 142
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
GFV +I+ + G QAL++++ +A VA+ L G +IY GCC + I+F+ + L
Sbjct: 143 IGFVNRII-INRRDGIQALVEFRDIETARVAKQRLNGCDIYSGCCTVKIEFAKVQFLDSY 201
Query: 184 YNNERSRDFTNPNLP 198
R+ PN+P
Sbjct: 202 KQTTRTCKAYTPNVP 216
>gi|207174030|gb|ACI23511.1| putative polypyrimidine tract-binding protein 2 [Aegilops
speltoides]
Length = 200
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 7/134 (5%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+LL ++ +M Y +T++ LH+VFS GFV+KI F+K++GF ALIQY +AV AR +L+
Sbjct: 62 VLLASVENMQYIVTIDALHEVFSAFGFVQKIAIFEKNSGFHALIQYPDIQTAVKAREALE 121
Query: 160 GRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPN-LPAEQKGRPSQSGYS---EAG 214
G +IY+ G C+L + FS +L V NNER RD+T N PA + PS G AG
Sbjct: 122 GHSIYEGGYCKLHLAFSRHTDLNVRINNERGRDYTGGNSAPANHE--PSILGPQPILAAG 179
Query: 215 VAFPQMANAAAIAA 228
P ++A + AA
Sbjct: 180 STAPPYSSAPSTAA 193
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 37/166 (22%)
Query: 165 DGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAA 224
DG C L I +S L V + + RSRD+TNP LP +A +A
Sbjct: 7 DGSCTLRINYSAHSVLNVKFQSHRSRDYTNPYLP---------------------LAPSA 45
Query: 225 AIAAAFGGGLPPGITGTNDRC--TVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-R 279
+ G+ G + VL++++ + + + D L +FS +G + +I + +
Sbjct: 46 IDGS--------GVDGKKEEAESNVLLASVENMQYIVTIDALHEVFSAFGFVQKIAIFEK 97
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
N HAL+Q D A A L+G ++ +L + FS+H ++
Sbjct: 98 NSGFHALIQYPDIQTAVKAREALEGHSIYEGGYCKLHLAFSRHTDL 143
>gi|407844094|gb|EKG01787.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 325
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 25/196 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 74 EVSRVIHMRNITPNVTQLSIQNLVQNFGNIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
I GR VY+++S+HQELT + + + LLV++ + Y IT
Sbjct: 134 QTGYAEIDGRRVYIRYSNHQELTATQHTS--------KTLLVSMFNTQYDVSAAAQITPM 185
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F +G V+KIV K+ QAL+Q+ + +A +S LQG+ + G
Sbjct: 186 IVYQIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQFDSKVTAENVKSILQGQPVTIGDT 245
Query: 167 -CCQLDIQFSNLDELQ 181
LDIQFS +D+++
Sbjct: 246 VTFTLDIQFSRMDDIK 261
>gi|407405096|gb|EKF30263.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 336
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 25/196 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 74 EVSRVIHMRNITPNVTQLSIQNLVQNFGNIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
I GR VY+++S+HQELT + + + LLV++ + Y IT
Sbjct: 134 QTGYAEIDGRRVYIRYSNHQELTATQHTS--------KTLLVSMFNTQYDVSAAAQITPM 185
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F +G V+KIV K+ QAL+Q+ + +A +S LQG+ + G
Sbjct: 186 IVYQIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQFDSKVTAENVKSILQGQPVTIGDT 245
Query: 167 -CCQLDIQFSNLDELQ 181
LDIQFS +D+++
Sbjct: 246 VTFTLDIQFSRMDDIK 261
>gi|145334809|ref|NP_001078750.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
gi|110737620|dbj|BAF00751.1| polypyrimidine tract-binding RNA transport protein-like
[Arabidopsis thaliana]
gi|332008936|gb|AED96319.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
Length = 329
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 103/208 (49%), Gaps = 38/208 (18%)
Query: 24 QLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINA-LQFYTNVQP------TIRGRNVY 74
+F FG + K+ A QAL+Q D +A A L P T+ ++
Sbjct: 32 HVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 91
Query: 75 VQFSSHQELTTMEQN---------------------------AQGRGDEP-NRILLVTIH 106
+ +S+H +LT Q+ G+ EP + +LL +I
Sbjct: 92 ITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIE 151
Query: 107 HMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166
+M Y +T++VLH VF+ G V+KI F K+ G QALIQY +AVVA+ +L+G IYDG
Sbjct: 152 NMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDG 211
Query: 167 C-CQLDIQFSNLDELQVNYNNERSRDFT 193
C+L I +S +L + NN+RSRD+T
Sbjct: 212 GFCKLHITYSRHTDLSIKVNNDRSRDYT 239
>gi|71423973|ref|XP_812637.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70877443|gb|EAN90786.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 325
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 25/196 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 74 EVSRVIHMRNITPNVTQLSIQNLVQNFGNIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP------ITVE 115
I GR VY+++S+HQELT + + + LLV++ + Y IT
Sbjct: 134 QTGYAEIDGRRVYIRYSNHQELTATQHTS--------KTLLVSMFNTQYDVSAAAQITPM 185
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F +G V+KIV K+ QAL+Q+ + +A +S LQG+ + G
Sbjct: 186 IVYQIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQFDSKVTAENVKSILQGQPVTIGDT 245
Query: 167 -CCQLDIQFSNLDELQ 181
LDIQFS +D+++
Sbjct: 246 VTFTLDIQFSRMDDIK 261
>gi|242021201|ref|XP_002431034.1| heterogeneous nuclear ribonucleoprotein L, putative [Pediculus
humanus corporis]
gi|212516263|gb|EEB18296.1| heterogeneous nuclear ribonucleoprotein L, putative [Pediculus
humanus corporis]
Length = 273
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 237 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 296
G G ++V L++ +++ DKLFNLF LYGNI RIK L+ K A++QMGDG E
Sbjct: 24 GALGVTTGPVMMVYGLDTKKLNCDKLFNLFCLYGNIARIKFLKTKEGAAMIQMGDGSAVE 83
Query: 297 LAVHFLKGALLFGK--RLEVNFSKHPNITQGADT----------HEYMNSNLNRFNRNAA 344
V L A +F RL++ FSK P ++ + +++ + NRF A
Sbjct: 84 RCVQHLNNAPMFDSKNRLQLGFSKQPFLSDVTNPFVLPDGSPSFKDFIRNKYNRFANLAM 143
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGKKQA--LVLFE 400
SP++++H P +TE+ ++ EE + + K+F M ++ + L+ FE
Sbjct: 144 SLKNRIQSPSRILHFFNTPPSLTEKMLLDLFEEKKIVPPLTIKIFPMKSERSSSGLIEFE 203
Query: 401 TEEQATEALV 410
E A EALV
Sbjct: 204 DIEGAIEALV 213
>gi|340056209|emb|CCC50538.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 314
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 25/196 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 78 EVSRVIHMRNITPNVTQLSIQNLVQNFGSIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 137
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVE------ 115
I GR VY+++S+HQELT + + + LLV++ + Y ++
Sbjct: 138 ETGYAEIDGRRVYIRYSNHQELTATQHTS--------KTLLVSMFNTQYDVSAAAQINPM 189
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F+ +G V+KIV K+ QAL+Q+ + +A ++ LQG+ + G
Sbjct: 190 IVYQIFANYGAVQKIVVLPKNESSQRNHNRVQALVQFDSKATAENVKNILQGQPVTIGET 249
Query: 167 -CCQLDIQFSNLDELQ 181
LDIQFS +D+++
Sbjct: 250 VTFTLDIQFSRMDDIK 265
>gi|226468142|emb|CAX76298.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 495
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 28/170 (16%)
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA------ 295
N ++VSNLN DR+ D LF LF +YG++ R+K++ NK D AL+Q D QA
Sbjct: 330 NGSTVLIVSNLNEDRVYPDALFTLFGVYGDVTRVKIMFNKKDTALIQFTDPHQALTGKHF 389
Query: 296 -------ELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNR 341
+A+ FL G L+ K +++ S+H NI T+ T +Y NS L+RF +
Sbjct: 390 VNILITNLIALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYTNSLLHRFRK 448
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
+KN++ P+ ++HLS +P VTE +I + TK FE+ G
Sbjct: 449 PNSKNFQNIYPPSHVLHLSNIPPSVTENDI-------RVLFATKGFEVTG 491
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 23/185 (12%)
Query: 48 MQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQ---------------- 91
MQ + SAI + +Y Q T+RGR + +Q+S HQ L +N
Sbjct: 1 MQCLESAIMMVSYYREYQVTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDL 60
Query: 92 --GRGDEPNRILLVTIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
P +L V + +++ I +LH++F +G + +IVT+ K+ + L+++
Sbjct: 61 SGANSGMPTTVLRVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNH 120
Query: 149 PSAVVARSSLQGRNIYDGCCQLDIQFS-NLDELQVNYNNERSRDFTNPNLPAEQ---KGR 204
A VA L G+NIY GCC L +QFS N L+V +E+ RD+ N L E+ R
Sbjct: 121 IHAFVAMLHLNGQNIYTGCCSLRVQFSKNRGPLEVRQESEKCRDYLNNPLTEEELLSLRR 180
Query: 205 PSQSG 209
P+ G
Sbjct: 181 PTAGG 185
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHFLKGA 305
V+V N+ +I+ L +F YG I+RI L+N H LV+ G+ A +A+ L G
Sbjct: 74 VVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQ 133
Query: 306 LLFGK--RLEVNFSK 318
++ L V FSK
Sbjct: 134 NIYTGCCSLRVQFSK 148
>gi|194695192|gb|ACF81680.1| unknown [Zea mays]
gi|414870435|tpg|DAA48992.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
gi|414870436|tpg|DAA48993.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 276
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +
Sbjct: 47 GKVKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITT 106
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFT--NPNL 197
A VA+ +L+G IYD G C+L + +S +L V ++ERSRD+T +PN+
Sbjct: 107 AAVAKQALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTLSDPNV 156
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAA 229
+ I FS +L + + + RSRD+TNP LP Q + G+ P +
Sbjct: 1 MRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG-------- 44
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
P G + +L S N + D L +FS +G + +I + +N AL+
Sbjct: 45 -----PDGKVKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALI 99
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
Q D A +A L+G ++ +L +++S+H ++
Sbjct: 100 QYPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 137
>gi|195622556|gb|ACG33108.1| hypothetical protein [Zea mays]
Length = 276
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP + +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY +
Sbjct: 47 GKVKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITT 106
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFT--NPNL 197
A VA+ +L+G IYD G C+L + +S +L V ++ERSRD+T +PN+
Sbjct: 107 AAVAKQALEGHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTLSDPNV 156
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAA 229
+ I FS +L + + + RSRD+TNP LP Q + G+ P +
Sbjct: 1 MRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQT--------AIEGIVQPTVG-------- 44
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
P G + +L S N + D L +FS +G + +I + +N AL+
Sbjct: 45 -----PDGKVKEPESNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALI 99
Query: 288 QMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
Q D A +A L+G ++ +L +++S+H ++
Sbjct: 100 QYPDITTAAVAKQALEGHCIYDGGYCKLHLSYSRHTDL 137
>gi|59323997|gb|AAW84264.1| heterogeneous nuclear ribonucleoprotein L, partial [Aplysia
californica]
Length = 237
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 305
+V LN D+++ ++LFNLF LYGN++RIK L++K A++Q+GD E A+ L
Sbjct: 30 VCMVYGLNMDKMNCERLFNLFCLYGNVVRIKFLKSKEGSAMIQLGDPISVERAIANLNNV 89
Query: 306 LLFGKRLEVNFSKHPNITQGADTHE----------YMNSNLNRFNRNAAKNYRYCCSPTK 355
FG +L+++ SK + + + HE +M + NRF A SP+K
Sbjct: 90 FFFGNKLQLSMSKQAFLQEVPNPHELADGTLSYKDFMGNRNNRFTNPEAAQKNRIQSPSK 149
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEALV- 410
++H P +TE E+ + K+ + K + LV FE++ EAL+
Sbjct: 150 VLHFFNAPPTITESEVFEMFDNAIGKRPLKMKQFPSKTERSCTGLVEFESKADGIEALIM 209
Query: 411 CKHA--SSLGGS---IIRISFSQL 429
H SS GG I ++ FS +
Sbjct: 210 VNHTPISSPGGKSPFIFKLCFSAM 233
>gi|71745136|ref|XP_827198.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831363|gb|EAN76868.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261331414|emb|CBH14408.1| DRBD4 [Trypanosoma brucei gambiense DAL972]
Length = 327
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 25/196 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 79 EVSRVIHMRNITPNVTQLSIQNLVQNFGNIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 138
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY------PITVE 115
I GR VY+++S+HQELT + + + LLV++ + Y IT
Sbjct: 139 EAGYAEIDGRRVYIRYSNHQELTATQHTS--------KTLLVSMFNTQYDVSAATSITPM 190
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F +G V+KIV K+ QAL+Q+ + +A ++ LQG+ + G
Sbjct: 191 IVYQIFCNYGAVQKIVVLPKNESSQRNHNRVQALVQFDSKATAENVKNILQGQPVTIGET 250
Query: 167 -CCQLDIQFSNLDELQ 181
LDIQFS +D ++
Sbjct: 251 VTFTLDIQFSRMDNIK 266
>gi|442755235|gb|JAA69777.1| Putative polypyrimidine tract binding protein 1 [Ixodes ricinus]
Length = 274
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 63/85 (74%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ +PS+V+H+RN+ ++ ++ D++ L PFG +T ++ L+ KNQA L+M D SA++ + +
Sbjct: 90 LGKPSRVVHIRNIPNDATDTDIVHLGIPFGKVTNVLQLKGKNQAFLEMSDEASAVSMVDY 149
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT 85
+T PT+RGR VYVQFS+H+EL T
Sbjct: 150 FTKASPTVRGRVVYVQFSNHRELKT 174
>gi|342183429|emb|CCC92909.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
Length = 320
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 25/196 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 82 EVSRVIHMRNITPNVTQLSIQNLVQNFGNIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 141
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLY------PITVE 115
I GR VY+++S+HQELT + + + LLV++ + Y IT
Sbjct: 142 ETGYADIDGRRVYIRYSNHQELTATQHTS--------KTLLVSMFNTQYDVSAATSITPM 193
Query: 116 VLHQVFSPHGFVEKIVTFQKSAG-------FQALIQYQLRPSAVVARSSLQGRNIYDG-- 166
+++Q+F +G V+KIV K+ QAL+Q+ + +A ++ LQG+ + G
Sbjct: 194 IVYQIFCNYGAVQKIVVLPKNDSSQRNHNRVQALVQFDSKQTAENVKNILQGQPVTIGET 253
Query: 167 -CCQLDIQFSNLDELQ 181
LDIQFS +D ++
Sbjct: 254 VTFTLDIQFSRMDNIK 269
>gi|256071583|ref|XP_002572119.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645120|emb|CCD60181.1| heterogeneous nuclear ribonucleoprotein l (hnrnp l), putative
[Schistosoma mansoni]
Length = 710
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 9/202 (4%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS I V ++ +E DL+ LF +G I ++ + AL++ ++ S L
Sbjct: 44 QPSCTIVVADIPEGCTERDLIGLFSRYGQIKNAKLVCSGRAALVEFCEI-SPPTRLVHMA 102
Query: 63 NVQPTIRGRN-VYVQFSSHQELTTMEQNAQGRG-----DEPNRILLVTIHHMLYPITVEV 116
+ P + G N V ++FSS +++ Q + + P IL + I + YPITV+V
Sbjct: 103 KINPFLVGPNRVRLEFSSETITPVIDRKHQSQSSALDSNSPTHILHLDISNAEYPITVDV 162
Query: 117 LHQVFSPHGFVEKIVTFQKSA--GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+ + SPHG + + +K+ +AL++++ A A+ L G +IY GCC L + +
Sbjct: 163 IKAICSPHGNILRTFIGKKNVDRSLEALVEFENVEEARAAKEQLDGADIYSGCCNLTVAY 222
Query: 175 SNLDELQVNYNNERSRDFTNPN 196
S L + V N+ S DFT P+
Sbjct: 223 SRLQRVHVTQNDSESWDFTGPS 244
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
VL+++ R++ D LFNL LYGN+ RIK L+ +P +A+VQ+G+ +L + G
Sbjct: 408 VLMASNIPQRMNCDHLFNLICLYGNVARIKFLKTRPGYAMVQVGNPETGDLIHRYFSGVC 467
Query: 307 LFGKRLEVNFSK------HPNITQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
+FG+ ++ + SK H N+ AD YM NRF + P++
Sbjct: 468 VFGQVIQFHHSKITELKEHENLGTLADGSPVMKNYMTDPNNRFRNSMVAAKSRILEPSRT 527
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ-----ALVLFETEEQATEALV 410
+H P + + ++I + G+ ++ K LV ++T +A EAL+
Sbjct: 528 LHFFNAPLNFSPDDICRVFSDCGATPPPRVVIFTSKAGQKTSLGLVEWDTLTEALEALI 586
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK- 303
CT++V+++ + D L LFS YG I KL+ + ALV+ + VH K
Sbjct: 47 CTIVVADIPEGCTERD-LIGLFSRYGQIKNAKLVCSG-RAALVEFCEISPPTRLVHMAKI 104
Query: 304 GALLFGK-RLEVNFSKHPNITQGAD-THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL-- 359
L G R+ + FS IT D H+ +S L+ SPT ++HL
Sbjct: 105 NPFLVGPNRVRLEFSSE-TITPVIDRKHQSQSSALDSN------------SPTHILHLDI 151
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKK--QALVLFETEEQATEALVCKHASSL 417
S +T + I + HG+I+ T + + N + +ALV FE E+A A + +
Sbjct: 152 SNAEYPITVDVIKAICSPHGNILRTFIGKKNVDRSLEALVEFENVEEARAAKEQLDGADI 211
Query: 418 --GGSIIRISFSQLQSI 432
G + +++S+LQ +
Sbjct: 212 YSGCCNLTVAYSRLQRV 228
>gi|198459570|ref|XP_001361426.2| GA21622 [Drosophila pseudoobscura pseudoobscura]
gi|198136733|gb|EAL26004.2| GA21622 [Drosophila pseudoobscura pseudoobscura]
Length = 369
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 146/343 (42%), Gaps = 53/343 (15%)
Query: 142 LIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNP---- 195
++++ +A AR +L G +IY GCC L I ++ ++L V Y NE S D+T
Sbjct: 1 MVEFDNLDAATRARENLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGKS 59
Query: 196 --NLPAEQKGRPSQSGYSEAGVAFPQMA------------NAAAIAAAFGGGLPPGIT-- 239
++P SQ G AFP A+I P G+
Sbjct: 60 LFSIPENVVMLESQPPLLGPGAAFPPFGAPEYHPTTPDNWKGASIHPTGLMKEPTGVVPG 119
Query: 240 ----------GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQM
Sbjct: 120 RNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQM 179
Query: 290 GDGFQAELAVHFLKG-ALLFGKRLEVNFSKHPNITQGADT----------HEYMNSNLNR 338
GD E V L + G ++++ FSK +++ + EY S NR
Sbjct: 180 GDSVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHTPSFKEYTGSKNNR 239
Query: 339 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA-- 395
F A + P+K++H P +TE++++ + + +LF + ++ +
Sbjct: 240 FLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSG 299
Query: 396 LVLFETEEQATEALV-CKHASSLGGS-----IIRISFSQLQSI 432
L+ F QA A++ C H G I+++ FS +S+
Sbjct: 300 LIEFPNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 342
>gi|20260638|gb|AAM13217.1| putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
gi|24899823|gb|AAN65126.1| putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
Length = 189
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 42/208 (20%)
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCC 168
++ QVFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C
Sbjct: 3 IIGQVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSC 62
Query: 169 QLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAA 228
L + +S +L + + + RSRD+TNP LP Q
Sbjct: 63 SLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQT-------------------------- 96
Query: 229 AFGGGLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RN 280
A G + P + + L+ N+ + D L +FS YG + +I + +N
Sbjct: 97 AMDGSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKN 155
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLF 308
AL+Q D A +A L+G ++
Sbjct: 156 GSTQALIQYSDIPTAAMAKEALEGHCIY 183
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 51/187 (27%)
Query: 24 QLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV-------- 73
Q+F FG + K+ A QAL+Q DV +A A + + GR++
Sbjct: 6 QVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRSIPRYLLSAH 58
Query: 74 ------YVQFSSHQEL---------------------TTMEQN------AQGRGDEP-NR 99
+ +S+H +L T M+ + A G+ E +
Sbjct: 59 VGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSN 118
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+A +A+ +L+
Sbjct: 119 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 178
Query: 160 GRNIYDG 166
G IYDG
Sbjct: 179 GHCIYDG 185
>gi|307103430|gb|EFN51690.1| hypothetical protein CHLNCDRAFT_139935 [Chlorella variabilis]
Length = 353
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 149/325 (45%), Gaps = 49/325 (15%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
T P+KVIH+RN+ +++ ++ + P+G I +NQA ++ + A+ +
Sbjct: 53 FTAPTKVIHLRNLPFDVTLEEIREFCAPWGTIVG----GNRNQAFVEFATLEQAMAIVSH 108
Query: 61 Y-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTI----HHMLYPITV 114
Y ++ +P RGR+ ++ FS LT N D P +L V + + +T+
Sbjct: 109 YQSSPEPAKFRGRSSWLSFSGRDRLT----NVTPSTDSPTPVLQVNVINIQPDLAQAVTL 164
Query: 115 EVLHQVFSPHGFVEKIVTFQKS-AGFQALIQYQLRPSAVVARSSLQGRNI-------YDG 166
++L+ VF HGFV+K+VT+ K G A +Q+ +A R++LQG+ I +
Sbjct: 165 DLLNSVFGAHGFVKKLVTYAKPEGGVVAWVQFPDAQTAATVRNTLQGQPIPRHLLNDHPN 224
Query: 167 CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAI 226
LD+ F+ +L + + +RD+TN +P G P S M A
Sbjct: 225 PPVLDMAFAAQPDLAIRAQSYCTRDYTNAAIP---WGEPDLS-----------MIQA--- 267
Query: 227 AAAFGGGLPPGITGTNDRCTVLVSNLN--SDRIDEDKLFNLFSLYGNIIRIKLL-RNKPD 283
+ P GT+ VL + + + + D + +FS YG + +I + R+
Sbjct: 268 -------MLPSSGGTDGPSNVLSVSFDQMTYPVTVDGVHTIFSTYGFVQKIHIFERDGRT 320
Query: 284 HALVQMGDGFQAELAVHFLKGALLF 308
ALVQ D A+ A L+G ++
Sbjct: 321 VALVQYADVATADSARAALEGHAMY 345
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 90 AQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRP 149
+ G D P+ +L V+ M YP+TV+ +H +FS +GFV+KI F++ AL+QY
Sbjct: 271 SSGGTDGPSNVLSVSFDQMTYPVTVDGVHTIFSTYGFVQKIHIFERDGRTVALVQYADVA 330
Query: 150 SAVVARSSLQGRNIYDG 166
+A AR++L+G +YDG
Sbjct: 331 TADSARAALEGHAMYDG 347
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
+PTK+IHL LP DVT EEI G+IV + QA V F T EQA A+V
Sbjct: 54 TAPTKVIHLRNLPFDVTLEEIREFCAPWGTIVG------GNRNQAFVEFATLEQAM-AIV 106
Query: 411 CKHASS 416
+ SS
Sbjct: 107 SHYQSS 112
>gi|354508326|ref|XP_003516204.1| PREDICTED: polypyrimidine tract-binding protein 1-like, partial
[Cricetulus griseus]
Length = 214
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 34/161 (21%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR++ ++++ +++ L PFG +T L+ML+ KNQ ++M A + +Y +
Sbjct: 56 PSRVIHVRSLPSDVTDGEVISLGLPFGKVTNLLMLKGKNQPFIEMNTEEVANTMVNYYMS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
+ P +RG+ +Y+QFS+H+EL T R
Sbjct: 116 LAPVLRGQPIYLQFSNHKELKTDNSPHHARAQAALQAVNSVHSRNLALAASAAAVDAGMA 175
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVT 132
G P +L V + ++ YP+T++VL+Q+FS G V KI+T
Sbjct: 176 MAGQSP--VLRVLVENLFYPVTLDVLNQIFSKFGTVVKIIT 214
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ +LP DVT+ E++S G + N L
Sbjct: 31 MSSSTSAANGNDSKKFKGDNRSTGVPSRVIHVRSLPSDVTDGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIREN 435
+ GK Q + TEE A + A L G I + FS + ++ +
Sbjct: 89 MLKGKNQPFIEMNTEEVANTMVNYYMSLAPVLRGQPIYLQFSNHKELKTD 138
>gi|76156506|gb|AAX27703.2| SJCHGC04647 protein [Schistosoma japonicum]
Length = 213
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 19/184 (10%)
Query: 263 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP-- 320
F S+YG+++R+K+L NK ALVQ D QA AV+FL G L+GK + SK+
Sbjct: 28 FKYRSVYGDVLRVKILHNKRSTALVQFTDSTQALRAVNFLNGVSLYGKIIRCVLSKNSFI 87
Query: 321 --------NITQGAD-----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
N+T + T +Y L+RF R ++N+ C+P+K++H++ LP+ ++
Sbjct: 88 NMPPTNLQNLTPDGENEIKTTCDYTGHKLHRFRRANSRNHFNICAPSKVLHITNLPESIS 147
Query: 368 EEEIVSHLEEHGS--IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRI 424
++ + S E H + K F+ KK AL+ F + A AL+ H + ++ IR+
Sbjct: 148 DDTLKSVFENHTDCQVCGVKSFKAE-KKMALMEFANLDDAISALIAMHNYPIEENMHIRV 206
Query: 425 SFSQ 428
SFS+
Sbjct: 207 SFSK 210
>gi|395751132|ref|XP_002829227.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform 2,
partial [Pongo abelii]
Length = 248
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 88/146 (60%), Gaps = 3/146 (2%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQL 147
+P G V++IV F+K+ G QA+++Y L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEYPL 240
>gi|414881409|tpg|DAA58540.1| TPA: hypothetical protein ZEAMMB73_710436 [Zea mays]
gi|414881410|tpg|DAA58541.1| TPA: hypothetical protein ZEAMMB73_710436 [Zea mays]
Length = 314
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 108 MLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
M Y +T++VLH+VFS GFV+KI F+K+ GFQALIQY +A A+ +L+G +IY+G
Sbjct: 1 MQYVVTIDVLHEVFSAFGFVQKIAIFEKN-GFQALIQYPDIQTAYAAKEALEGHSIYEGG 59
Query: 168 -CQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSG---YSEAGVAFPQMANA 223
C+L + FS EL V NNER RD+T N +PS G G A P A
Sbjct: 60 YCKLHLTFSRHTELNVKVNNERGRDYTKGNA-TPSSDQPSILGPQPIPSVGAAIPP-AQG 117
Query: 224 AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRI 257
+ +AA +PPG D L SN +S+ +
Sbjct: 118 SVPSAATNSVMPPG-----DPSVALPSNPSSEPL 146
>gi|291224827|ref|XP_002732404.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Saccoglossus kowalevskii]
Length = 423
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 55/202 (27%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVR + + E DL++ Q FG I+ ++M+ K QAL++ +D
Sbjct: 45 PSPVVHVRGLSDTVIEADLVEAVQHFGPISYVIMMPRKRQALIEFED------------- 91
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
I G V ++ +V+H + +P
Sbjct: 92 ----IEGAKACVNYAQ-----------------------------------DVMHTICNP 112
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V++IV F+K+ G Q +I+Y L SA A++SL G +IY GCC L I+++ L V
Sbjct: 113 FGPVQRIVIFKKN-GVQTMIEYPLIYSASRAKASLNGADIYSGCCTLKIEYARPTRLNVY 171
Query: 184 YNNERSRDFTNPNL--PAEQKG 203
N+ + D+TNP L A++KG
Sbjct: 172 KNDNETYDYTNPTLGTGAKEKG 193
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 50/72 (69%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V+V + ++++ DKLFN+ LYG++++IK +++KP A+VQMGD E A+ L +
Sbjct: 304 VMVYGMEPEKLNCDKLFNVLCLYGSVLKIKFMKSKPGCAMVQMGDALAVERAITNLNNVV 363
Query: 307 LFGKRLEVNFSK 318
+F K++++ FSK
Sbjct: 364 VFEKKMQLGFSK 375
>gi|148699702|gb|EDL31649.1| mCG13402, isoform CRA_f [Mus musculus]
Length = 257
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 34/149 (22%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 83 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 142
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 143 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 202
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQV 120
G P +L + + ++ YP+T++VLHQV
Sbjct: 203 MAGQSP--VLRIIVENLFYPVTLDVLHQV 229
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 58 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 115
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENSQ 437
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 116 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS 167
>gi|149050609|gb|EDM02782.1| heterogeneous nuclear ribonucleoprotein L-like (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 261
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQAL 142
+P G V++IV F+++ G QA+
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAM 258
>gi|112280295|gb|ABI14681.1| polypyrimidine tract binding protein [Plasmodium chabaudi chabaudi]
gi|112280297|gb|ABI14682.1| polypyrimidine tract binding protein [Plasmodium chabaudi chabaudi]
Length = 142
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-QKSAGFQALIQY 145
++N++ +E ++++LV++ +M YP+ +E+++ +FS G VEKI+T +K++ FQAL+Q
Sbjct: 17 KRNSKYNKNECSKVILVSVVNMQYPVDIELIYYLFSKCGVVEKIITISKKTSIFQALVQL 76
Query: 146 QLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205
+ A A +L RNIYDGC L IQ+S L EL V NN +S D+T N P K
Sbjct: 77 ESIEVAKEAIKTLHNRNIYDGCNTLQIQYSFLKELIVKNNNSQSWDYTTSN-PQRNKNNS 135
Query: 206 S 206
S
Sbjct: 136 S 136
>gi|70926044|ref|XP_735622.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56509445|emb|CAH87610.1| hypothetical protein PC302548.00.0 [Plasmodium chabaudi chabaudi]
Length = 201
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-QKSAGFQALIQY 145
++N++ +E ++++LV++ +M YP+ +E+++ +FS G VEKI+T +K++ FQAL+Q
Sbjct: 68 KRNSKYNKNECSKVILVSVVNMQYPVDIELIYYLFSKCGVVEKIITISKKTSIFQALVQL 127
Query: 146 QLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205
+ A A +L RNIYDGC L IQ+S L EL V NN +S D+T N P K
Sbjct: 128 ESIEVAKEAIKTLHNRNIYDGCNTLQIQYSFLKELIVKNNNSQSWDYTTSN-PQRNKSNS 186
Query: 206 S 206
S
Sbjct: 187 S 187
>gi|339254278|ref|XP_003372362.1| hypothetical protein Tsp_10607 [Trichinella spiralis]
gi|316967236|gb|EFV51693.1| hypothetical protein Tsp_10607 [Trichinella spiralis]
Length = 235
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%)
Query: 118 HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177
QVF G V +I+ F K+ FQALIQ+ SA A+ +L G+ + +GCC L I+FS L
Sbjct: 14 RQVFVTFGTVLRIIIFHKNNNFQALIQFLDPISAYAAKMALDGKPLINGCCTLKIEFSKL 73
Query: 178 DELQVNYNNERSRDFTNPNLPA 199
L V YNNE+SRDFTNPNLP+
Sbjct: 74 ATLNVKYNNEKSRDFTNPNLPS 95
>gi|330801720|ref|XP_003288872.1| hypothetical protein DICPUDRAFT_55687 [Dictyostelium purpureum]
gi|325081065|gb|EGC34595.1| hypothetical protein DICPUDRAFT_55687 [Dictyostelium purpureum]
Length = 663
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 8/144 (5%)
Query: 242 NDRCTVL-VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
++R TVL V L+ + + D++FNLFS+YGN+ R+K+L K ALVQM D QAEL +
Sbjct: 359 HNRTTVLIVHGLDENIMTIDRIFNLFSVYGNVQRVKILSTKKGAALVQMEDPQQAELIIR 418
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGAD------THEYMNSNLNRFNRNAAKNYRYCCSPT 354
F LF L++ +SKH +IT + + + +S+L+RF+ + Y++ P+
Sbjct: 419 FYHQMPLFKDTLQITYSKHLSITDSHNPESPSLSKNFSDSSLHRFS-HPINTYKHLYKPS 477
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEH 378
+ ++ S +P+D TE + L+ H
Sbjct: 478 QTLYFSNVPKDFTEASFIQLLQSH 501
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 97 PNRILLVTIHHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P +LL TI + IT++ L+ FS G V +IV F K+ QALI++ +A+ A+
Sbjct: 174 PGSVLLCTIESQANHSITIDHLYHAFSSCGEVLRIVMFTKN-NLQALIEFSSVDNALNAK 232
Query: 156 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFT 193
+L G ++ G C+L ++ S D L + N +R++D+T
Sbjct: 233 KTLFGHALFHGGQCKLKLEISKTDRLNITQNTDRAKDYT 271
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 4 PSKVIHVRNVGHEISENDLLQLF----QPFGVITKLVMLRAKNQALLQMQDVPSAINALQ 59
PS V+H+R++ +ENDL Q+ FG + +L +QALL+M + SA L+
Sbjct: 10 PSAVLHIRSIPAGTTENDLFQITFDQSHKFGKCVSVRLLERYHQALLEMDSIDSATRLLK 69
Query: 60 FYTNVQPTIRGRNVYVQFSSHQEL 83
+ + G+ V + +S Q +
Sbjct: 70 YSQKNSLLLHGKPVQISYSKSQTI 93
>gi|156368306|ref|XP_001627636.1| predicted protein [Nematostella vectensis]
gi|156214551|gb|EDO35536.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V LN ++++ +++FNLF LYGN+I++K L NKP +VQM D +E+ + L GA
Sbjct: 2 LMVYGLNHEKMNCERIFNLFCLYGNVIKVKFLTNKPGACMVQMSDKIASEMIIRNLSGAT 61
Query: 307 LFGKRLEVNFSKHPNITQGA-------DTHEYMNSNLNRFNRNAAKNYRYCCS------P 353
+F ++ + FSKHP I + + MN NR NR N + S P
Sbjct: 62 IFDNKINIMFSKHPFIADSSVVTALPDSSPSAMNFADNRNNRFKYDNMPFLDSVVGYQPP 121
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQALVLFETEE--QATEAL 409
T+M+H P + T +++ + G++ K F K + L E + A EAL
Sbjct: 122 TRMLHFFNAPPNCTVDQLRDVSTKAGALAPLKGTFFSKANTKSSAGLLEMPDIRSAMEAL 181
Query: 410 V 410
+
Sbjct: 182 I 182
>gi|339254276|ref|XP_003372361.1| hnRNP-L/PTB/hephaestus splicing factor family protein [Trichinella
spiralis]
gi|316967237|gb|EFV51694.1| hnRNP-L/PTB/hephaestus splicing factor family protein [Trichinella
spiralis]
Length = 174
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 268 LYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI----- 322
+YG++ R+K+L AL+Q + QA+ A+H L G L+GK + V+ SKH ++
Sbjct: 3 VYGDVQRVKILCYNKTVALIQYTEPCQAQQAIHNLDGVCLWGKPMHVSLSKHTSVQLLKE 62
Query: 323 --TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS 380
+ T +Y NS L+RF +KNY P+ +HLS +P V+ E I + E+ G
Sbjct: 63 GQSDYGLTKDYSNSTLHRFKTPGSKNYTNIYPPSFRLHLSNIPHSVSGEFIKNIFEQAGF 122
Query: 381 IVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
V F +K A V E+ EQA EAL+ H L +R++FS+
Sbjct: 123 EVKYFRFFATNRKMATVHLESLEQAVEALIKMHNYPLTENGNLRVAFSK 171
>gi|444525178|gb|ELV13969.1| Heterogeneous nuclear ribonucleoprotein L [Tupaia chinensis]
Length = 473
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 62/289 (21%)
Query: 180 LQVNYNNERSRDFTNPNL---------PAEQKGRPSQSG-----YSEAGVAFPQMANAAA 225
L V N++ + D+TNPNL P +++ +P G Y E G FP + + +
Sbjct: 158 LNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGE-GRGFPSVDSRGS 216
Query: 226 IAAA------FGGGLP------------------------PGITGTNDRCTVLVSNLNSD 255
A A F LP + D +LV ++
Sbjct: 217 CAPARRPPRKFSPVLPLFPSHPPGGPHGGHHSHYHDEGYXTQVRTNTDSPVLLVYGMDQS 276
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
+++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V
Sbjct: 277 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVC 336
Query: 316 FSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQ 364
SK P I G ++ S NRF+ AAKN P+ ++H P
Sbjct: 337 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPL 394
Query: 365 DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
+VTEE +E G + + +GK + L+ +E++ A E L
Sbjct: 395 EVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 443
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 44 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 103
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT VF
Sbjct: 104 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITTPTRLNVF 161
>gi|56758064|gb|AAW27172.1| SJCHGC07076 protein [Schistosoma japonicum]
Length = 161
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 9/157 (5%)
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYM 332
NK ALVQ D QA A+++L G L+G+ L+++ S+ NI Q T +Y
Sbjct: 3 NKKSTALVQFSDPQQALTALYYLNGQPLYGRPLKISVSRF-NIVQLPKEDTDVGLTKDYT 61
Query: 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGK 392
NS L+RF + +KN+ +P ++HLS +P D+TEEE+ E G V F + K
Sbjct: 62 NSPLHRFRKPNSKNFSNIYAPNHVLHLSNIPSDITEEEVRMIFETKGYHVTDFKFLLKDK 121
Query: 393 KQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
K AL+ E + A +A++ H L S +RISFS+
Sbjct: 122 KMALIQLENVDMAIQAMIDLHNCQLTENSHLRISFSK 158
>gi|194881395|ref|XP_001974833.1| GG20898 [Drosophila erecta]
gi|190658020|gb|EDV55233.1| GG20898 [Drosophila erecta]
Length = 210
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT-NPNLPAEQKGRPSQSG 209
+L G +IY GCC L I ++ ++L V Y NE S D+T + P RP G
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTACPTSWVLRPESCG 192
>gi|405972821|gb|EKC37569.1| Heterogeneous nuclear ribonucleoprotein L [Crassostrea gigas]
Length = 186
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR + I E DL Q FG ++ +V++ K+QAL++ +D+ A + + +
Sbjct: 26 PSQVVHVRGLAENILEQDLKDSVQHFGPVSYVVLMPRKHQALVEFEDISGATSCVNYAEE 85
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G+ Y FS+ Q + RG N ILL T+ + YPITV+V+H++ +
Sbjct: 86 NQIYVAGQPAYFNFSTSQRIQRPAGGEDHRGG--NHILLFTVLNPQYPITVDVMHKICTA 143
Query: 124 HGFVEKIVTFQKSAGFQAL 142
+G V++IV F+K+ G QA+
Sbjct: 144 YGQVQRIVIFKKN-GVQAM 161
>gi|66820074|ref|XP_643683.1| hypothetical protein DDB_G0275365 [Dictyostelium discoideum AX4]
gi|60471793|gb|EAL69748.1| hypothetical protein DDB_G0275365 [Dictyostelium discoideum AX4]
Length = 695
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 244 RCTVL-VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
R TVL V L+ + D++FNLF +YGN+ R+K+L +K ALVQM D QAE + F
Sbjct: 370 RTTVLLVHGLDEAVMTCDRIFNLFCVYGNVQRVKILSSKKGAALVQMEDVQQAEAVIRFY 429
Query: 303 KGALLFGKRLEVNFSKHPNITQGAD------THEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
LF L++N+SKH +IT + + ++ SNLNRF Y++ P++
Sbjct: 430 HQMPLFKDTLQINYSKHLSITDSHNPESPTLSKDFAQSNLNRFTH-PINTYKHLYKPSQT 488
Query: 357 IHLSTLPQDVTE 368
++ S +P+D TE
Sbjct: 489 LYFSNVPKDFTE 500
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 49/238 (20%)
Query: 4 PSKVIHVRNVGHEISENDLLQLF--QPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
PS V+H+R++ +ENDL ++ FG + +L +QALL+M V SA L++
Sbjct: 14 PSAVLHIRSIPQGTTENDLFKITFDHKFGKCVSVRILERFHQALLEMDSVESATRLLKYS 73
Query: 62 TNVQPTIRGRNVYVQFSSHQEL-------------------------------------- 83
+ G+ V + FS Q +
Sbjct: 74 QKNSLLLHGKPVQISFSKSQSINQPTPQSPTNTTTTTNTTSSSSSSHRSSPSSSSYNGLP 133
Query: 84 ------TTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQVFSPHGFVEKIVTFQKS 136
+ N +LL TI + IT++ L+ VFS G V +IV F K+
Sbjct: 134 QAGSRQSNFSPNTNNSAPIAGTVLLSTIENPGSNSITIDHLYHVFSSCGEVLRIVMFNKN 193
Query: 137 AGFQALIQYQLRPSAVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFT 193
QALI++ SA+ A+ +L +++ G C L ++ S D L + N +R++DF+
Sbjct: 194 -NLQALIEFSTVESALHAKKTLSNHSLFHGGQCTLKLEVSKTDRLNITQNTDRAKDFS 250
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEMNGKKQALVLFETEEQAT 406
Y P+ ++H+ ++PQ TE ++ +H G V+ ++ E QAL+ ++ E AT
Sbjct: 10 YNDVPSAVLHIRSIPQGTTENDLFKITFDHKFGKCVSVRILER--FHQALLEMDSVESAT 67
Query: 407 EALVCKHASS--LGGSIIRISFSQLQSIRE 434
L +S L G ++ISFS+ QSI +
Sbjct: 68 RLLKYSQKNSLLLHGKPVQISFSKSQSINQ 97
>gi|253723235|pdb|2E5I|A Chain A, Solution Structure Of Rna Binding Domain 2 In
Heterogeneous Nuclear Ribonucleoprotein L-Like
Length = 124
Score = 87.0 bits (214), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Query: 92 GRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
G D+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++
Sbjct: 14 GNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESV 72
Query: 149 PSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL 197
A A+++L G +IY GCC L I+++ L V N+ S D+T P L
Sbjct: 73 LCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 121
>gi|387219209|gb|AFJ69313.1| polypyrimidine tract binding protein [Nannochloropsis gaditana
CCMP526]
Length = 324
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 36/324 (11%)
Query: 133 FQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF 192
F K AG QAL+QY SA A RN+Y + + +S +++V N +R+ D+
Sbjct: 2 FNKGAGNQALVQYPDVASAQAAFEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDY 61
Query: 193 TN--------PNLPAE---QKGRPSQS------------GYSEAGV-AFPQMANAAAIAA 228
T P PA+ PS + G ++G+ A + A +
Sbjct: 62 TKKKTCEGSAPAGPADTTPSSATPSATPSAPPSGPPAVVGPVDSGLKASLRERIVADMPN 121
Query: 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
+ LP GT D C ++V LN + + + L LF LYG++ R+K++ + D A+V+
Sbjct: 122 TWSARLP----GT-DTCVLIVQGLNMEMVGAEALAALFGLYGDVRRVKMMPEQ-DSAIVE 175
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY- 347
M QA +A L + L G+ ++V S I + ++ L+ + + A+ +
Sbjct: 176 MERPVQAYVAKWLLDASPLGGRVIKVKSSTQDTI-RDVQAQDFTAFPLHGYRQYASPRHP 234
Query: 348 RYCCS---PTKMIHLSTLPQDVTEEEIVSHL-EEHGSIVNTKLFEMNGKKQALVLFETEE 403
Y + PT ++ ++ + D +E S L ++ G + T+L + ALV F++ E
Sbjct: 235 SYLANLVEPTAVLRIANIDWDTSEITFRSLLTQQEGVMGVTRLLPSSHTSPALVSFQSVE 294
Query: 404 QATEALVCKHASSLGGSIIRISFS 427
A A + H + G ++ ++FS
Sbjct: 295 AAVHACILLHNQEVDGRLLYVTFS 318
>gi|379318420|pdb|3TO8|A Chain A, Crystal Structure Of The Two C-Terminal Rrm Domains Of
Heterogeneous Nuclear Ribonucleoprotein L (Hnrnp L)
Length = 218
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 9 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 68
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG++L V SK P I G ++ S NRF+ AAKN
Sbjct: 69 NNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ-- 126
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTEE +E G + + +GK + L+ +E++ A E
Sbjct: 127 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALE 186
Query: 408 AL 409
L
Sbjct: 187 TL 188
>gi|344255741|gb|EGW11845.1| Polypyrimidine tract-binding protein 2 [Cricetulus griseus]
Length = 141
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 250 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 309
S+L + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++G
Sbjct: 21 SSLLLKMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYG 80
Query: 310 KRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362
K + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +
Sbjct: 81 KIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 140
Query: 363 P 363
P
Sbjct: 141 P 141
>gi|195144760|ref|XP_002013364.1| GL24102 [Drosophila persimilis]
gi|194102307|gb|EDW24350.1| GL24102 [Drosophila persimilis]
Length = 494
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
K F + +YG++ R+K+L NK D AL+QM + QA LA+ L L+G+ + V SKH
Sbjct: 316 KEFVISCVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGRPIRVMASKHQ 375
Query: 321 NI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 373
+ T +Y + L+RF + +KNY+ P+ +HLS +P +E++I
Sbjct: 376 AVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKE 435
Query: 374 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ V F +K AL+ + E+A AL+ H L S +R+SFS+
Sbjct: 436 AFTSNTFEVKAFKFFPKDRKMALLQLSSVEEAVLALIKMHNHQLSESNHLRVSFSK 491
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVML 38
+ + SKVIH+RN+ +E E+D++ L PFG +T +++L
Sbjct: 85 IAKASKVIHLRNIPNESGESDVIALGVPFGRVTNVLVL 122
>gi|386768321|ref|NP_001246430.1| smooth, isoform V [Drosophila melanogaster]
gi|383302603|gb|AFH08183.1| smooth, isoform V [Drosophila melanogaster]
Length = 540
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT 193
+L G +IY GCC L I ++ ++L V Y NE S D+T
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT 175
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 308 MMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIP 367
Query: 307 L-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ G ++++ FSK +++ EY S NRF A + P+K
Sbjct: 368 VGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSK 427
Query: 356 MIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-C 411
++H P +TE++++ + + +LF + ++ + L+ F QA A++ C
Sbjct: 428 ILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKC 487
Query: 412 KHASSLGGS-----IIRISFSQLQSI 432
H G I+++ FS +S+
Sbjct: 488 NHLPIEGKGTKFPFIMKLCFSSSKSM 513
>gi|386768305|ref|NP_001246423.1| smooth, isoform K [Drosophila melanogaster]
gi|383302595|gb|AFH08176.1| smooth, isoform K [Drosophila melanogaster]
Length = 535
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT 193
+L G +IY GCC L I ++ ++L V Y NE S D+T
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT 175
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 303 MMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIP 362
Query: 307 L-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ G ++++ FSK +++ EY S NRF A + P+K
Sbjct: 363 VGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSK 422
Query: 356 MIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-C 411
++H P +TE++++ + + +LF + ++ + L+ F QA A++ C
Sbjct: 423 ILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKC 482
Query: 412 KHASSLGGS-----IIRISFSQLQSI 432
H G I+++ FS +S+
Sbjct: 483 NHLPIEGKGTKFPFIMKLCFSSSKSM 508
>gi|386768317|ref|NP_001246428.1| smooth, isoform T [Drosophila melanogaster]
gi|383302601|gb|AFH08181.1| smooth, isoform T [Drosophila melanogaster]
Length = 552
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT 193
+L G +IY GCC L I ++ ++L V Y NE S D+T
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT 175
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V L
Sbjct: 320 MMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIP 379
Query: 307 L-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ G ++++ FSK +++ EY S NRF A + P+K
Sbjct: 380 VGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSK 439
Query: 356 MIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-C 411
++H P +TE++++ + + +LF + ++ + L+ F QA A++ C
Sbjct: 440 ILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKC 499
Query: 412 KHASSLGGS-----IIRISFSQLQSI 432
H G I+++ FS +S+
Sbjct: 500 NHLPIEGKGTKFPFIMKLCFSSSKSM 525
>gi|358256069|dbj|GAA57625.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 739
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS I V + SE DL+ +F+ FG + ++ AL++ ++ S+ L
Sbjct: 43 THPSCTIVVYELPTGCSEQDLISIFRQFGEVKNAKVVCNGKAALVEFCEI-SSPTRLVHM 101
Query: 62 TNVQPTIRGRN-VYVQFSSHQELTTMEQNAQGRG------DEPNRILLVTIHHMLYPITV 114
+ P G N V ++FSS + + + +G +E IL + + YPITV
Sbjct: 102 AKINPFHVGPNRVRLEFSSETIPFSSSRQPEPKGTLLPSGEEATCILHLDVAAADYPITV 161
Query: 115 EVLHQVFSPHGFVEKIVTFQKSA--GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDI 172
+V+ + PHG + ++ +K+ + L++++ A A+ L G +IY GCC L
Sbjct: 162 DVIRSICEPHGKLVRVFIGKKNVDRSLEVLVEFESPKDAAKAKEHLDGADIYSGCCSLTA 221
Query: 173 QFSNLDELQVNYNNERSRDFTNPN 196
FS + ++ V N+ S DF+ PN
Sbjct: 222 TFSKVQKVHVTKNDSESWDFSGPN 245
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D LFNL +YGN+ R+K L+++P A+VQ+G+ A+ + G +FG + SK
Sbjct: 431 DHLFNLLCVYGNVARVKFLKSRPGCAMVQVGNAEAADFIHRYYNGISVFGHTIRFYHSKQ 490
Query: 320 PNITQ---------GADTHE-YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
P + + G+ + YM NRF + P++ +H P +++ E
Sbjct: 491 PQLVEHDNLGTLDDGSPVMKNYMMDPNNRFRNAVVASKSRILEPSRTLHFFNAPLNISPE 550
Query: 370 EIVSHLEEHGSIVNTKLFEMN---GKKQALVL--FETEEQATEALV 410
++ + G++ ++ N G+K +L L ++T +A EAL+
Sbjct: 551 DMCRVFTDSGAVCPPRVVLFNTKAGQKTSLGLAEWDTLSEALEALI 596
>gi|291490719|gb|ADE06675.1| MIP19475p [Drosophila melanogaster]
Length = 206
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 88 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 146
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNPNLPAEQKGRPSQSGYSE 212
+L G +IY GCC L I ++ ++L V Y NE S D+T L + +GY E
Sbjct: 147 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT---LSTREMQSTGSAGYHE 200
>gi|55562839|gb|AAH86392.1| Hnrpl protein [Rattus norvegicus]
gi|208609538|dbj|BAG72209.1| heterogenous nuclear ribonucleoprotein L [Rattus norvegicus]
Length = 245
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 36 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 95
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG+++ V SK P I G ++ S NRF+ AAKN
Sbjct: 96 NNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ-- 153
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTEE +E G T + +GK + L+ ++++ A E
Sbjct: 154 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALE 213
Query: 408 AL 409
L
Sbjct: 214 TL 215
>gi|375073695|gb|AFA34406.1| polypirimidine tract binding 2 protein, partial [Ostrea edulis]
Length = 142
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 46 LQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNA--------------- 90
L+ D + + + F+ IR + VYVQFS+H+EL T + N+
Sbjct: 1 LEFLDEQAGVTMVSFHQQNPAQIRMKPVYVQFSNHKELKTDQANSFQNATAQAALQAASA 60
Query: 91 --QGRGDEPNR--ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
G +E + L + + H++YP+ +EVL+Q+FS G V K++ F K+ FQALIQ
Sbjct: 61 VMGGPTEEGQKRTTLRIIVEHLVYPVGIEVLYQIFSKFGKVLKMIIFTKNNSFQALIQMS 120
Query: 147 LRPSAVVARSSLQGRNIYDGCC 168
+A A+ SL G+NIY+GCC
Sbjct: 121 DPVAANAAKLSLDGQNIYNGCC 142
>gi|357380735|pdb|3TYT|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein L (Hnrpl) From Mus Musculus At 1.60 A
Resolution
Length = 205
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 62
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG+++ V SK P I G ++ S NRF+ AAKN
Sbjct: 63 NNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ-- 120
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTEE +E G T + +GK + L+ ++++ A E
Sbjct: 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALE 180
Query: 408 AL 409
L
Sbjct: 181 TL 182
>gi|359497338|ref|XP_003635487.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein homolog 2-like, partial [Vitis vinifera]
Length = 273
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 23/203 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV H+RN+ E + +L+++ +PFG I TK + +NQ ++ + I +Y
Sbjct: 16 PSKVFHLRNLPWECTGEELIEMGKPFGKIVNTKCNVGANRNQIFIEFAGLNQTIAMRSYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH----HMLYPITVE 115
++ +PT ++G+ VY+Q+S+ + + +A G+ +LLVTI H+ + +
Sbjct: 76 ASSSKPTQVQGKTVYLQYSNWXGIVKNKTSADVAGN----VLLVTIEGADAHL---VNIN 128
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-RSSLQGRNI-------YDGC 167
VLH VFS GFV KI F+K+ FQAL+Q+ +A A +++ GR+I +
Sbjct: 129 VLHLVFSAFGFVHKITIFEKTVRFQALVQFSDSETASTAKKNAFDGRSIPRYLLPEHLRP 188
Query: 168 CQLDIQFSNLDELQVNYNNERSR 190
C L I FS L+ + S+
Sbjct: 189 CTLRITFSAHIYLKSIWTKPHSK 211
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K+ HL LP + T EE++ + G IVNTK + Q + F Q T
Sbjct: 10 FRYTQPPSKVFHLRNLPWECTGEELIEMGKPFGKIVNTKCNVGANRNQIFIEFAGLNQ-T 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
A+ +ASS + G + + +S I +N
Sbjct: 69 IAMRSYYASSSKPTQVQGKTVYLQYSNWXGIVKN 102
>gi|322792288|gb|EFZ16272.1| hypothetical protein SINV_02525 [Solenopsis invicta]
Length = 354
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 23/208 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L D+++ DKLFNLF LYGN+ ++K L+ K A++QMGD E + L
Sbjct: 89 MMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKTKEGCAMIQMGDSIAVERCLQNLNNVT 148
Query: 307 L-FGKRLEVNFSK--------HPNI--TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ RL++ FSK +P I + A ++ S NRF A N P+K
Sbjct: 149 IGTDGRLQLGFSKQAFLSDVTNPYILPDKTASFKDFTGSKNNRFLNPAMANKNRIQPPSK 208
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV- 410
++H P D+TEE + E G + KLF + ++ + L+ F + A A++
Sbjct: 209 IVHFFNTPPDLTEETVNRVFVERGIEAPTTIKLFPLKSERSSSGLIEFSSVGIAVAAIME 268
Query: 411 CKHASSLGGS------IIRISFSQLQSI 432
C H ++L S I+++ FS ++I
Sbjct: 269 CNH-TALENSNGKFPYIMKLCFSSSRTI 295
>gi|253722484|pdb|2AD9|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd1 Complexed With Cucucu Rna
Length = 119
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 89
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 90 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 119
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
R P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A
Sbjct: 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMNTEE-AAN 81
Query: 408 ALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+V + S L G I I FS + ++ +S
Sbjct: 82 TMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 113
>gi|332023719|gb|EGI63943.1| Heterogeneous nuclear ribonucleoprotein L [Acromyrmex echinatior]
Length = 363
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 23/208 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L D+++ DKLFNLF LYGN+ ++K L+ K A++QMGD E + L
Sbjct: 129 MMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKTKEGCAMIQMGDSIAVERCLQNLNNVT 188
Query: 307 LFGK-RLEVNFSK--------HPNI--TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ RL++ FSK +P I + A ++ S NRF A N P+K
Sbjct: 189 IGPDGRLQLGFSKQAFLSDVTNPYILPDKTASFKDFTGSKNNRFLNPAMANKNRIQPPSK 248
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV- 410
++H P D+TEE + E G + KLF + ++ + L+ F + A A++
Sbjct: 249 IVHFFNTPPDLTEETVNRVFVERGIEAPTTIKLFPLKSERSSSGLIEFSSVGIAVAAIME 308
Query: 411 CKHASSLGGS------IIRISFSQLQSI 432
C H ++L S I+++ FS ++I
Sbjct: 309 CNH-TALENSNGKFPYIMKLCFSSSRTI 335
>gi|380022117|ref|XP_003694900.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Apis florea]
Length = 337
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 23/208 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L D+++ DKLFNLF LYGN+ ++K L+ K A++QMGD E + L
Sbjct: 103 MMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKTKEGCAMIQMGDSIAVERCLQNLNNVT 162
Query: 307 L-FGKRLEVNFSK--------HPNI--TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ RL++ FSK +P I + A ++ S NRF A N P+K
Sbjct: 163 IGTDGRLQLGFSKQAFLSDVTNPYILPDKTASFKDFTGSKNNRFLNPAMANKNRIQPPSK 222
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV- 410
++H P D+TEE + E G + KLF + ++ + L+ F + A A++
Sbjct: 223 IVHFFNTPPDLTEETVHRVFVERGIEAPTTVKLFPLKSERSSSGLIEFSSVGIAVAAIME 282
Query: 411 CKHASSLGGS------IIRISFSQLQSI 432
C H ++L S I+++ FS ++I
Sbjct: 283 CNH-TALENSNGKFPYIMKLCFSSSRTI 309
>gi|357501941|ref|XP_003621259.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496274|gb|AES77477.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 780
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+LL +I +M Y +TV+V++ VFS G V+KI F+K+ QALIQY +A AR +L+
Sbjct: 533 VLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALE 592
Query: 160 GRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFP 218
G IYD G C+L + +S +L V +++SRD+T P +PA P +A +P
Sbjct: 593 GHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVPAPVWQNP------QAAPMYP 646
Query: 219 QMANAAAIAAAFGGGLP 235
N+ A GG P
Sbjct: 647 --TNSPAYQTQVPGGSP 661
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 57/238 (23%)
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L I
Sbjct: 399 VFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLRI 458
Query: 173 QFSNLDELQVNYNNERS----------------------RDFTNPNLPAEQKGRPSQSGY 210
+S +L + + + RS D+TNP LP
Sbjct: 459 SYSAHRDLNIKFQSNRSSLSICPGDDQVLLFYRLGVTEAWDYTNPMLP------------ 506
Query: 211 SEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSL 268
N +AI A + P VL++++ + + + D + +FS
Sbjct: 507 ----------VNHSAIEGAAQPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSA 556
Query: 269 YGNIIRIKLL-RNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
+G + +I + +N AL+Q D A A L+G ++ +L +++S+H ++
Sbjct: 557 FGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDL 614
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+V G IVNTK + QA V F
Sbjct: 11 FRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLA 70
Query: 407 EALV 410
EA V
Sbjct: 71 EAYV 74
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINA 57
PSKV+H+RN+ E SE +L++L PFG I TK + +NQA ++ P A
Sbjct: 17 PSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLAEA 72
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 45 LLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILL 102
L+ + D AI+ + +Y ++ +P +RG+ VY+Q+S+ E+ N + GD P +LL
Sbjct: 174 LIHVVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLL 229
Query: 103 VTIHHM-LYPITVEVLH-------QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-- 152
VTI + ++++V+H Q FS F + F + F L +L P +
Sbjct: 230 VTIEGVEAGDVSIDVIHLLVLLAWQDFSGVAFSTVMAGFLVTGRF--LSPPKLPPERIEP 287
Query: 153 --VARSSLQG 160
+ RS+LQG
Sbjct: 288 ETLRRSTLQG 297
>gi|195335919|ref|XP_002034610.1| GM19821 [Drosophila sechellia]
gi|194126580|gb|EDW48623.1| GM19821 [Drosophila sechellia]
Length = 237
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGPVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFT 193
+L G +IY GCC L I ++ ++L V Y NE S D+T
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT 175
>gi|55669743|pdb|1SJQ|A Chain A, Nmr Structure Of Rrm1 From Human Polypyrimidine Tract
Binding Protein Isoform 1 (Ptb1)
Length = 105
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 61/91 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 74
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRG 94
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 75 VTPVLRGQPIYIQFSNHKELKTDSSPNQARA 105
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMNTEE-AANTMVNY 71
Query: 413 HAS---SLGGSIIRISFSQLQSIRENS 436
+ S L G I I FS + ++ +S
Sbjct: 72 YTSVTPVLRGQPIYIQFSNHKELKTDS 98
>gi|354507573|ref|XP_003515830.1| PREDICTED: polypyrimidine tract-binding protein 1-like, partial
[Cricetulus griseus]
Length = 217
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 59/82 (71%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR++ +++E ++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRSLPSDVTEGKVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +RG+ +Y+QFS+H+EL T
Sbjct: 116 VAPVLRGQPIYLQFSNHKELKT 137
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQM 289
PG+ G + +LVSNLN +R+ LF LF +YG+++R+K+L N ++ALVQM
Sbjct: 165 PGLAGAGN-SVLLVSNLNPERVTPQSLFILFRVYGDVLRVKILFNNKENALVQM 217
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ +LP DVTE +++S G + N L + GK QA
Sbjct: 39 NGNDSKKFKGDNRSTGVPSRVIHVRSLPSDVTEGKVISLGLPFGKVTN--LLMLKGKNQA 96
Query: 396 LVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENSQ 437
+ TEE A + A L G I + FS + ++ +S
Sbjct: 97 FIEMNTEEAANTMVNYYTSVAPVLRGQPIYLQFSNHKELKTDSS 140
>gi|307166549|gb|EFN60616.1| Heterogeneous nuclear ribonucleoprotein L [Camponotus floridanus]
Length = 274
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L D+++ DKLFNLF LYGN+ ++K L+ K A++QMGD E + L
Sbjct: 1 MMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKTKEGCAMIQMGDSIAVERCLQNLNNVT 60
Query: 307 L-FGKRLEVNFSKHPNIT----------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ RL++ FSK ++ + A ++ S NRF A N P+K
Sbjct: 61 IGTDGRLQLGFSKQAFLSDVTNPYILPDKTASFKDFTGSKNNRFLNPAMANKNRIQPPSK 120
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV- 410
++H P D+TEE + E G + KLF + ++ + L+ F + A A++
Sbjct: 121 IVHFFNTPPDLTEETVNRVFVERGIEAPTTIKLFPLKSERSSSGLIEFSSVGIAVAAIME 180
Query: 411 CKHASSLGGS------IIRISFSQLQSI 432
C H ++L S I+++ FS ++I
Sbjct: 181 CNH-TALENSNGKFPYIMKLCFSSSRTI 207
>gi|307214686|gb|EFN89615.1| Heterogeneous nuclear ribonucleoprotein L [Harpegnathos saltator]
Length = 235
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L D+++ DKLFNLF LYGN+ ++K L+ K A++QMGD E + L
Sbjct: 1 MMVYGLQPDKVNTDKLFNLFCLYGNVTKVKFLKTKEGCAMIQMGDSIAVERCLQNLNNVT 60
Query: 307 L-FGKRLEVNFSKHPNIT----------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ RL++ FSK ++ + A ++ S NRF A N P+K
Sbjct: 61 IGTDGRLQLAFSKQAFLSDVTNPYILPDKTASFKDFTGSKNNRFLNPAMANKNRIQPPSK 120
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQATEALV- 410
++H P D+TEE + E G + KLF + ++ + L+ F + A A++
Sbjct: 121 IVHFFNTPPDLTEETVNRVFVERGIEAPTTVKLFPLKSERSSSGLIEFSSVGVAVAAIME 180
Query: 411 CKHASSLGGS------IIRISFSQLQSI 432
C H ++L S I+++ FS ++I
Sbjct: 181 CNH-TALENSNGKFPYIMKLCFSSSRTI 207
>gi|4001819|gb|AAC94999.1| putative polypyrimidine tract-binding protein [Carassius auratus]
Length = 165
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+V+H+R V E+SE +++ L PFG +T L++L+ KNQA L+M +AI + +YT
Sbjct: 78 DPSRVLHIRRVPIEVSEAEVVTLGVPFGKVTNLLLLKGKNQAFLEMASEEAAITMVNYYT 137
Query: 63 NVQPTIRGRNVYVQFSSHQELTT 85
P +R + VY+Q+S+H+EL T
Sbjct: 138 TATPLVRNQPVYIQYSNHRELKT 160
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQ 404
K R C P++++H+ +P +V+E E+V+ G + N L + GK QA + +EE
Sbjct: 71 KGERSPCDPSRVLHIRRVPIEVSEAEVVTLGVPFGKVTN--LLLLKGKNQAFLEMASEEA 128
Query: 405 A 405
A
Sbjct: 129 A 129
>gi|146197802|dbj|BAF57617.1| hnRNP L protein [Dugesia japonica]
Length = 537
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 126/323 (39%), Gaps = 56/323 (17%)
Query: 110 YPITVEVLHQVFSPHGFVEKIVTFQKSAG--FQALIQYQLRPSAVVARSSLQGRNIYDGC 167
YPITV+++ Q+ G + KI +K+ + L++++ A A+ +L G +IY GC
Sbjct: 4 YPITVDIIKQICLKFGKLLKIFIGKKNQDNVVECLVEFEKISEAKAAKEALHGEDIYSGC 63
Query: 168 CQLDIQFSNLDELQVNYNNERSRDFTNPNLP-AEQKGRPSQSGYSEAGVAFPQMANAAAI 226
C LD+++S + + V N++ S DF+ + K PS S V N
Sbjct: 64 CSLDVKYSKMSNVPVFKNDDESWDFSKSQVKQGILKVPPSNGSVSSNNVNVFTPTNPQLY 123
Query: 227 AAAFGGGLP--------PGITGTNDRCTVLVSN---------------LNSD-------- 255
+ + P P I G C L+ N +N D
Sbjct: 124 SPVYNFPPPMSYNHMPVPPIHGF--PCHNLIYNYPSIQKNSKSKSKLDINKDAFVVEIGV 181
Query: 256 ---------RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
I D LFNLF LYGN+ +IK N+P A+VQMG E + +
Sbjct: 182 VFMVYNLPFNICVDHLFNLFCLYGNVNKIK-FTNQPGTAMVQMGSKAAVETCIQYYNNKT 240
Query: 307 LFGKRLEVNFSKHPNITQGADTH----------EYMNSNLNRFNRNAAKNYRYCCSPTKM 356
LFG+ + + P I + ++ NRF + N P +
Sbjct: 241 LFGQEMHLMKCNKPEIFPSKNIEFLPNGTPVFKDFSADANNRFLNDHGINSNKILEPNRT 300
Query: 357 IHLSTLPQDVTEEEIVSHLEEHG 379
+H P E ++ + + + G
Sbjct: 301 LHFFNAPYTFAEIDLNNMIIQSG 323
>gi|20987847|gb|AAH30461.1| Hnrpl protein, partial [Mus musculus]
Length = 207
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 17/176 (9%)
Query: 249 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF 308
V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +F
Sbjct: 4 VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF 63
Query: 309 GKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMI 357
G+++ V SK P I G ++ S NRF+ AAKN P+ ++
Sbjct: 64 GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ--HPSNVL 121
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
H P +VTEE +E G T + +GK + L+ ++++ A E L
Sbjct: 122 HFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 177
>gi|328869052|gb|EGG17430.1| hypothetical protein DFA_08425 [Dictyostelium fasciculatum]
Length = 603
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 13/192 (6%)
Query: 12 NVGHEISENDLLQLFQ--PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR 69
+V E +E +LL + FG V + K QAL++ V +A + F
Sbjct: 46 SVPAEATEQELLAFVKGYSFGRPIVAVKILGKLQALVETDSVETASRIIAFARETPIIFH 105
Query: 70 GRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK 129
G+ + ++S+ + + N + G+ ILL TI + + V++L+ FS +G V +
Sbjct: 106 GKPLQFEYSNSKTI-----NNRPIGN----ILLCTIENATMTVNVDLLNHFFSLYGEVLR 156
Query: 130 IVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNER 188
IV F KS QAL++Y A A+ LQG +Y G C L I+ S +D L V NN+R
Sbjct: 157 IVIFNKSVNLQALVEYSSPELAFHAKKLLQGAMLYQGGYCVLRIEISKVDRLNVTLNNDR 216
Query: 189 SRDFTNPNLPAE 200
+RD+T NLP+E
Sbjct: 217 TRDYTK-NLPSE 227
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
R TV++ L + + D++FNL +YGN+ +IK++++ +VQM D QA+ +++
Sbjct: 329 RSTVMIYGL-VESMSYDRIFNLSCIYGNVQKIKIVKSG-HSVMVQMEDALQADAIINYYN 386
Query: 304 GALLFGKRLEVNFSKHPNITQGA------DTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
LFG+ L V SKH IT + ++ Y ++ RF+ + + Y++ P++ +
Sbjct: 387 QITLFGQPLNVMCSKHDTITDSSNPESVTNSRNYTHTPFKRFSHSIS-TYKHLYKPSQTL 445
Query: 358 HLSTLPQDVTE 368
+ S +P+D TE
Sbjct: 446 YFSNVPKDFTE 456
>gi|344237410|gb|EGV93513.1| Heterogeneous nuclear ribonucleoprotein L-like [Cricetulus griseus]
Length = 237
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 215 VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR 274
VA+P A ++ GG P G V+VS L+ +++ ++FNLF LYGNI +
Sbjct: 10 VAYPL---PQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGNIEK 59
Query: 275 IKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGA 326
+K ++ P ALV+MGD + E AV L LFGKRL V SK ++ G
Sbjct: 60 VKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGT 119
Query: 327 DTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VN 383
++ ++ S NRF + P+ ++H +P VTEE +H + +
Sbjct: 120 SSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIK 179
Query: 384 TKLFEMNGKKQ---ALVLFETEEQATEAL 409
K+F+ + L+ ++ + A EAL
Sbjct: 180 YKVFDAKASAKTLSGLLEWKCKTDAVEAL 208
>gi|189235383|ref|XP_001809748.1| PREDICTED: similar to smooth CG9218-PG [Tribolium castaneum]
Length = 321
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 41/227 (18%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH------ 300
++V L+ R + DKLFNL LYGN+ RIK L++K A+VQMGD E V
Sbjct: 74 LMVYGLDPLRTNADKLFNLMCLYGNVARIKFLKSKEGTAMVQMGDSVAVERCVQNLNNVT 133
Query: 301 -FLKGALLFG--------------KRLEVNFSKHPNITQGADTH----------EYMNSN 335
L GA +L++ FSK P +++ + + EY+ +
Sbjct: 134 VGLTGAAPLSHHNNVKDDKNNQSEHKLQLAFSKQPFLSEVTNPYPLPDKSPSYKEYITNK 193
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--TKLFEMNGKK 393
NRF A + P+K++H P VTE E+V ++ + KLF M ++
Sbjct: 194 NNRFMNPAMASKNRIQPPSKILHFFNTPPQVTESELVQVFRDYDVVPPKAVKLFPMKSER 253
Query: 394 QALVLFE---TEEQATEALVCKHAS--SLGGS---IIRISFSQLQSI 432
+ L E T E + C HA+ S G I+++ FS +S+
Sbjct: 254 SSSGLLEFEDTTEAVAAVMACNHAAIESPGTKFPFIMKLCFSSSRSM 300
>gi|56755978|gb|AAW26167.1| SJCHGC00591 protein [Schistosoma japonicum]
Length = 160
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 10/157 (6%)
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYM 332
NK D AL+Q D QA A+ FL G L+ K +++ S+H NI T+ T +Y
Sbjct: 3 NKKDTALIQFTDPHQALTALQFLNGQRLWDKPMKIAVSRH-NIVQLPKEDTENGLTKDYT 61
Query: 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGK 392
NS L+RF + +KN++ P+ ++HLS +P VTE +I G V F M
Sbjct: 62 NSLLHRFRKPNSKNFQNIYPPSHVLHLSNIPPSVTENDIRVLFATKGFEVTGFRF-MKDN 120
Query: 393 KQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
K ALV ET + A ++L+ H S L S +RISFS+
Sbjct: 121 KMALVQLETVDLAIQSLIELHNSQLTENSHLRISFSK 157
>gi|270003599|gb|EFA00047.1| hypothetical protein TcasGA2_TC002855 [Tribolium castaneum]
Length = 393
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 41/227 (18%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH------ 300
++V L+ R + DKLFNL LYGN+ RIK L++K A+VQMGD E V
Sbjct: 146 LMVYGLDPLRTNADKLFNLMCLYGNVARIKFLKSKEGTAMVQMGDSVAVERCVQNLNNVT 205
Query: 301 -FLKGALLFG--------------KRLEVNFSKHPNITQGADTH----------EYMNSN 335
L GA +L++ FSK P +++ + + EY+ +
Sbjct: 206 VGLTGAAPLSHHNNVKDDKNNQSEHKLQLAFSKQPFLSEVTNPYPLPDKSPSYKEYITNK 265
Query: 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLFEMNGKK 393
NRF A + P+K++H P VTE E+V ++ + KLF M ++
Sbjct: 266 NNRFMNPAMASKNRIQPPSKILHFFNTPPQVTESELVQVFRDYDVVPPKAVKLFPMKSER 325
Query: 394 QALVLFE---TEEQATEALVCKHAS--SLGGS---IIRISFSQLQSI 432
+ L E T E + C HA+ S G I+++ FS +S+
Sbjct: 326 SSSGLLEFEDTTEAVAAVMACNHAAIESPGTKFPFIMKLCFSSSRSM 372
>gi|350034148|dbj|GAA34297.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 735
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 9/200 (4%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T P+ I + SENDL +F FG I ++ + L+Q ++ S+ L
Sbjct: 43 THPNCTIIAYELPDGCSENDLFAIFNQFGEIKHTKLVCSGKAGLVQFSEI-SSPTRLVHM 101
Query: 62 TNVQPTIRGRN-VYVQFSSHQELTTM-EQNAQGRGDEPN----RILLVTIHHMLYPITVE 115
+ P G N V ++FS+ + Q GR P+ +ILL+ I YPITV+
Sbjct: 102 AKINPFYIGSNHVCLEFSAESIAPLLVSQIDTGRPRPPSEEQTKILLLDITAADYPITVD 161
Query: 116 VLHQVFSPHGFVEKIVTFQKSA--GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173
V+ + PHG V +I +K+ +AL++ A + + G +IY GCC L +
Sbjct: 162 VIRSICQPHGKVLRIFIGKKNIDRSVEALVELDTSEDARKVKEQIDGADIYYGCCTLKVT 221
Query: 174 FSNLDELQVNYNNERSRDFT 193
+S + + V N+ S DF+
Sbjct: 222 YSKISRVHVTKNDSESWDFS 241
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
D LFNL YGNI RI+ L+++ A+VQ+G AE + G +FG ++ + SK
Sbjct: 451 DHLFNLLCPYGNIARIRFLKSRRGSAMVQLGTAEAAEFVHQYYNGRTVFGHKIRFSSSKQ 510
Query: 320 PNITQGAD----------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
P + + + Y++ NRF A +P++ +H LP +++ +
Sbjct: 511 PQLVEYPNLGTLDDGSPVMKNYIDDPNNRFRNPAIAAKSRITAPSRTLHFFNLPLNISLQ 570
Query: 370 EIVSHLEEHGSIVNTKLFEMNGKKQ-----ALVLFETEEQATEALV 410
++ + G++ +L N K L ++T +A EA+V
Sbjct: 571 DVCRIFTDCGAVSPPRLLLFNQKPGQMTSLGLAEWDTLAEALEAMV 616
>gi|355694931|gb|AER99834.1| heteroproteinous nuclear ribonucleoprotein L [Mustela putorius
furo]
Length = 239
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 13/163 (7%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 72 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHL 131
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
+FG++L V SK P I G ++ S NRF+ AAKN
Sbjct: 132 NNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQ 189
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ 394
P+ ++H P +VTEE +E G + + +GK +
Sbjct: 190 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE 232
>gi|405972820|gb|EKC37568.1| Heterogeneous nuclear ribonucleoprotein L [Crassostrea gigas]
Length = 370
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 44/229 (19%)
Query: 192 FTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSN 251
+ +PN+PA+ GY E G P A F G + ++V
Sbjct: 158 YGHPNMPAQ--------GYQEQGPPPP--------GAMFQGSV------------IMVYG 189
Query: 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311
LN D+I DKLFNLF LYGN++R+K L++K A+VQMGD + + L LF +
Sbjct: 190 LNLDKISCDKLFNLFCLYGNVVRVKFLKSKEGSAMVQMGDAMAVDRCMQNLNYMTLFDNK 249
Query: 312 LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 371
+ + SK + + +E + + + ++N RY P+ ++ I
Sbjct: 250 ITLGHSKQAFLQDVPNPYELPDGTPSFKDYMGSRNNRYAN-----------PEAASKNHI 298
Query: 372 VSHLEEHGSI--VNTKLFEMNGKKQA--LVLFETEEQATEALV-CKHAS 415
+ LE G+ KLF + + L+ FE++ +A EALV HAS
Sbjct: 299 LLVLENVGAAKPFKVKLFASKSDRSSSGLMQFESKSEALEALVLANHAS 347
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 150 SAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL---PAEQKGRP- 205
+A A+ +L G +IY GCC L I F+ L V N+ S D+T + PA Q+ P
Sbjct: 23 TAKRAKQNLNGADIYSGCCTLKIDFAKPTRLNVFRNDNESWDYTQSSPEKDPANQRNGPL 82
Query: 206 -SQSGYSEAGVAFPQM 220
+ Y+ A + + Q+
Sbjct: 83 LADPRYTNAPIPYGQL 98
>gi|2760632|dbj|BAA24237.1| protein L [Mus musculus]
Length = 199
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315
+++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V
Sbjct: 3 KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 62
Query: 316 FSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQ 364
SK P I G ++ S NRF+ AAKN P+ ++H P
Sbjct: 63 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ--HPSNVLHFFNAPL 120
Query: 365 DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
+VTEE +E G T + +GK + L+ ++++ A E L
Sbjct: 121 EVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 169
>gi|159163853|pdb|2CQ1|A Chain A, Solution Structure Of Rna Binding Domain In Ptb-Like
Protein L
Length = 101
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 58/82 (70%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 73
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +R + +Y+Q+S+H+EL T
Sbjct: 74 VTPHLRNQPIYIQYSNHKELKT 95
>gi|170040282|ref|XP_001847933.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863860|gb|EDS27243.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 347
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 99/185 (53%), Gaps = 16/185 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L+S + DKLFNLF LYGN++RIK L+ K A+VQMGD E ++ L
Sbjct: 82 MMVYGLDSSTANTDKLFNLFCLYGNVVRIKFLKTKEGTAMVQMGDAIAVERSIQHLNNIP 141
Query: 307 LF--GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC----------SPT 354
+ G ++++ FSK +++ + + +++++ + +A+KN R+ P+
Sbjct: 142 IGNDGSKIQIAFSKQNYLSESTNPYTLPDNSISFKDYSASKNNRFLSLTQASKNRIQPPS 201
Query: 355 KMIHLSTLPQDVTEEEIV-SHLEEHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV- 410
K++H P ++E++++ + + ++F + ++ + LV F + A A++
Sbjct: 202 KILHFFNTPPGMSEDQLLQAFTSKDCHPAQVRMFPLKSERSSSGLVEFPSVSLAVAAIMK 261
Query: 411 CKHAS 415
C H++
Sbjct: 262 CNHSA 266
>gi|62088112|dbj|BAD92503.1| polypyrimidine tract binding protein 2 variant [Homo sapiens]
Length = 177
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 58/82 (70%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 79 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 138
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +R + +Y+Q+S+H+EL T
Sbjct: 139 VTPHLRNQPIYIQYSNHKELKT 160
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 78 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 129
>gi|170068929|ref|XP_001869049.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167864924|gb|EDS28307.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 268
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 99/187 (52%), Gaps = 16/187 (8%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
++V L+S + DKLFNLF LYGN++RIK L+ K A+VQMGD E ++ L
Sbjct: 71 AVMMVYGLDSSTANTDKLFNLFCLYGNVVRIKFLKTKEGTAMVQMGDAIAVERSIQHLNN 130
Query: 305 ALLF--GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC----------S 352
+ G ++++ FSK +++ + + +++++ + +A+KN R+
Sbjct: 131 IPIGNDGSKIQIAFSKQNYLSESTNPYTLPDNSISFKDYSASKNNRFLSLTQASKNRIQP 190
Query: 353 PTKMIHLSTLPQDVTEEEIV-SHLEEHGSIVNTKLFEMNGKKQA--LVLFETEEQATEAL 409
P+K++H P ++E++++ + + ++F + ++ + LV F + A A+
Sbjct: 191 PSKILHFFNTPPGMSEDQLLQAFTSKDCHPAQVRMFPLKSERSSSGLVEFPSVSLAVAAI 250
Query: 410 V-CKHAS 415
+ C H++
Sbjct: 251 MKCNHSA 257
>gi|157123790|ref|XP_001660296.1| heterogeneous nuclear ribonucleoprotein l (hnrnp l) [Aedes aegypti]
gi|108874222|gb|EAT38447.1| AAEL009659-PA [Aedes aegypti]
Length = 551
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
++V L++ + DKLFNLF LYGN++RIK L+ K A+VQMGD E ++ L
Sbjct: 287 AVMMVYGLDNSTANTDKLFNLFCLYGNVVRIKFLKTKEGTAMVQMGDAIAVERSIQHLNN 346
Query: 305 ALLF--GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC----------S 352
+ G ++++ FSK +++ + + +++++ + +A+KN R+
Sbjct: 347 IPIGNDGSKIQIAFSKQNYLSESTNPYTLPDNSISFKDYSASKNNRFLSLTQASKNRIQP 406
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKLFEMNGKKQA--LVLFETEEQATEAL 409
P+K++H P ++E+++++ + + ++F + ++ + LV F + A A+
Sbjct: 407 PSKILHFFNTPPGMSEDQLLNAFTSKDCLPSQVRMFPLKSERSSSGLVEFPSVALAVNAI 466
Query: 410 V-CKHAS 415
+ C H++
Sbjct: 467 MKCNHSA 473
>gi|119601314|gb|EAW80908.1| hCG41678, isoform CRA_a [Homo sapiens]
Length = 183
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L + + ++ YP T++VLHQ+FS G V K +TF K FQAL+QY +A + SL
Sbjct: 9 VLRIIVENLFYPTTLDVLHQIFSKFGTV-KTITFIKDNQFQALLQYTDPENAQHTKLSLD 67
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF 192
+N Y+ C L I FS L L V YNN++SRD+
Sbjct: 68 WQNTYNACHTLCIDFSKLISLNVKYNNDKSRDY 100
>gi|156322331|ref|XP_001618332.1| hypothetical protein NEMVEDRAFT_v1g154871 [Nematostella vectensis]
gi|156198513|gb|EDO26232.1| predicted protein [Nematostella vectensis]
Length = 140
Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 83/138 (60%), Gaps = 8/138 (5%)
Query: 298 AVHFLKGALLFGKRLEVNFSKHPNIT---QGADTH---EYMNSNLNRFNRNAAKNYRYCC 351
A+ L G +FGK ++V SKH +++ +G DT+ +YMNS L+RF + +KN++
Sbjct: 1 AIGHLNGVRVFGKEMKVTNSKHTSVSLPKEGEDTNLTKDYMNSPLHRFKKPGSKNFQNIF 60
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 411
P++ +HLS +P+ VTEEE+ S E+ G + + + + +K A + T E+A +AL+
Sbjct: 61 PPSRTLHLSNIPESVTEEELTSMFEDCGDVADFRFLPKD-RKMAHLSMATTEEAIDALIK 119
Query: 412 KHASSLGGS-IIRISFSQ 428
H + + +R+SF++
Sbjct: 120 MHNYKISETHHLRVSFAR 137
>gi|260803908|ref|XP_002596831.1| hypothetical protein BRAFLDRAFT_99727 [Branchiostoma floridae]
gi|229282091|gb|EEN52843.1| hypothetical protein BRAFLDRAFT_99727 [Branchiostoma floridae]
Length = 525
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V+V + ++++ ++LFNL LYGN+++IK +++KP A+VQMGD E ++ L +
Sbjct: 316 VMVYGMVPNKMNCERLFNLLCLYGNVMKIKFMKSKPGSAMVQMGDPSAVERCINNLSTCV 375
Query: 307 LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKN---YRYCCS---------PT 354
LFG++L +++S+ I + + + + +KN + CS P+
Sbjct: 376 LFGQQLALSYSRQKFIDEKGQPFLLEDGTSSYTDFTNSKNNSAVEHVCSLTPHARIQQPS 435
Query: 355 KMIHLSTLPQDVTEEEIVS-HLEEHGSIVNT--KLFEMNGKKQALVLFETEEQ--ATEAL 409
K++H P D TEE + + G T K+F+ ++ + L E ++Q A EAL
Sbjct: 436 KVLHFFNAPPDATEESLRQLTFSDAGVPPPTAIKMFQSRTERSSSGLLEWDKQSDALEAL 495
Query: 410 V-CKHA 414
V C H+
Sbjct: 496 VICNHS 501
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 35 LVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRG 94
++M+ K QAL++ +D+ A + ++F Q + G Y +S+ Q+++ R
Sbjct: 82 VIMMPKKRQALVEFEDIDGAESCVKFAQTNQCYVGGAPAYFNYSTSQKISRPGGPEDTR- 140
Query: 95 DEPNRILLVTIHHMLYPITV 114
N ILL TI + YPIT
Sbjct: 141 -NANHILLFTILNPTYPITT 159
>gi|294931323|ref|XP_002779833.1| neural polypyrimidine tract binding protein, putative [Perkinsus
marinus ATCC 50983]
gi|239889519|gb|EER11628.1| neural polypyrimidine tract binding protein, putative [Perkinsus
marinus ATCC 50983]
Length = 210
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 36/225 (16%)
Query: 115 EVLHQVFSPHG--FVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDI 172
E L+Q+ + +G + +++ F + AL++ + + A + L G+NI+ C L I
Sbjct: 1 EDLNQIMARYGRNSMLRVIVFHRGTVMHALVETKSQEIADQVKRELDGQNIFTQCNTLRI 60
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQ---------------SGYSEAGVAF 217
++S+ +L VNYNNERS DFTN LP G PS+ S YS G+ +
Sbjct: 61 RYSSFRQLHVNYNNERSWDFTNAGLPT---GYPSKNYPPLTEETLRKHIRSTYSRLGMKY 117
Query: 218 PQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKL 277
Q I + V V + + L LF++YG++ +K+
Sbjct: 118 SQRP----------------IRENTEMPIVFVVIHADTLLSCNDLAALFAVYGDVRTVKV 161
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322
L+ A+V + D Q AV +L G + G LE++ ++ I
Sbjct: 162 LQEPRPCAIVHLADFQQCARAVRYLSGLEVHGHLLELSVNRRDKI 206
>gi|76157413|gb|AAX28348.2| SJCHGC04555 protein [Schistosoma japonicum]
Length = 304
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+R + ++SE+++ L PFG I +++ R QAL++M + SA + +Y V
Sbjct: 42 SRVLHLRGLPPDVSESEVAMLAIPFGSIANMILTRKSCQALVEMDTLESAESMFGYYMTV 101
Query: 65 -QPTIRGR-NVYVQFSSHQELTTM-----------EQNAQ------GRGDEPNRILLVTI 105
P +RG+ + +QFS + LT E N Q D P +L + +
Sbjct: 102 CTPNLRGKYPIEMQFSKYSSLTNATTNNATLSAIEEANKQFVTFRCENEDSPKTVLHIHV 161
Query: 106 HHMLYPITVEVL--HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
P+ + L F P G + ++V+F+K+ A +++ SA VA+ + G +
Sbjct: 162 EKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPL 221
Query: 164 YDGCCQLDI---QFSNLDELQVNYNNERSRDFT-NP 195
+ C I +FS L+++ + SRDF NP
Sbjct: 222 FPMECNFHILRTEFSRQSTLEIHREDNSSRDFVQNP 257
>gi|226470154|emb|CAX70358.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 474
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+R + ++SE+++ L PFG I +++ R QAL++M + SA + +Y V
Sbjct: 42 SRVLHLRGLPPDVSESEVAMLAIPFGSIANMILTRKSCQALVEMDTLESAESMFGYYMTV 101
Query: 65 -QPTIRGR-NVYVQFSSHQELTTM-----------EQNAQ------GRGDEPNRILLVTI 105
P +RG+ + +QFS + LT E N Q D P +L + +
Sbjct: 102 CTPNLRGKYPIEMQFSKYSSLTNATTNNATLSAIEEANKQFVTFRCENEDSPKTVLHIHV 161
Query: 106 HHMLYPITVEVL--HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
P+ + L F P G + ++V+F+K+ A +++ SA VA+ + G +
Sbjct: 162 EKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPL 221
Query: 164 YDGCCQLDI---QFSNLDELQVNYNNERSRDFT-NP 195
+ C I +FS L+++ + SRDF NP
Sbjct: 222 FPMECNFHILRTEFSRQSTLEIHREDNSSRDFVQNP 257
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 307
VSNLN+++++ D LF LF +YG+++R+K+L NK ALVQ D QA AV+FL G L
Sbjct: 383 FVSNLNTEKVNPDTLFILFGVYGDVLRVKILHNKRSTALVQFTDSTQALRAVNFLNGVSL 442
Query: 308 FGKRLEVNFSKH 319
+GK + S++
Sbjct: 443 YGKIIRCVLSRN 454
>gi|226470156|emb|CAX70359.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 415
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+R + ++SE+++ L PFG I +++ R QAL++M + SA + +Y V
Sbjct: 42 SRVLHLRGLPPDVSESEVAMLAIPFGSIANMILTRKSCQALVEMDTLESAESMFGYYMTV 101
Query: 65 -QPTIRGR-NVYVQFSSHQELTTM-----------EQNAQ------GRGDEPNRILLVTI 105
P +RG+ + QFS + LT E N Q D P +L + +
Sbjct: 102 CTPNLRGKYPIETQFSKYSSLTNATTNNATLSAIEEANKQFVTFRCENEDSPKTVLHIHV 161
Query: 106 HHMLYPITVEVL--HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
P+ + L F P G + ++V+F+K+ A +++ SA VA+ + G +
Sbjct: 162 EKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPL 221
Query: 164 YDGCCQLDI---QFSNLDELQVNYNNERSRDFT-NP 195
+ C I +FS L+++ + SRDF NP
Sbjct: 222 FPMECNFHILRTEFSRQSTLEIHREDNSSRDFVQNP 257
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 278
VSNLN+++++ D LF LF +YG+++R+K+L
Sbjct: 383 FVSNLNTEKVNPDTLFILFGVYGDVLRVKIL 413
>gi|56756296|gb|AAW26321.1| SJCHGC09002 protein [Schistosoma japonicum]
Length = 408
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++VSN+ R++ D LFNL LYGN+ RIK L+ +P +ALVQ+G+ +L + G
Sbjct: 106 LMVSNI-PQRMNCDHLFNLLCLYGNVARIKFLKTRPGYALVQVGNPETGDLIHRYFNGVC 164
Query: 307 LFGKRLEVNFSK------HPNITQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
+FG+ ++ + SK H N+ +D YM NRF P++
Sbjct: 165 VFGQVIQFHHSKVTELKEHENLGTLSDGSPIMKNYMTDPNNRFRNQMVAAKSRILEPSRT 224
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ-----ALVLFETEEQATEALV 410
+H P + + ++I + G+I ++ K LV ++T +A EAL+
Sbjct: 225 LHFFNAPLNFSPDDICRVFADSGAIPPPRVVIFTSKAGQKTSLGLVEWDTLTEALEALI 283
>gi|414870438|tpg|DAA48995.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 140
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 12/131 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA-KNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L+ L +PFG V+ + + A +NQA ++ D AI+ + +Y
Sbjct: 15 PSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYP--ITVEVL 117
++ +P +RG+ VY+Q+S+ QE+T N +G GD +LLVT + P +T+EV+
Sbjct: 75 ASSSEPAQVRGKTVYIQYSNRQEIT----NNKGTGDSSGNVLLVTFEG-VQPNDVTIEVI 129
Query: 118 HQV-FSPHGFV 127
H V FS + +V
Sbjct: 130 HLVSFSIYMYV 140
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE 402
+A +RY +P+K++HL +P + TEEE+V + G +VNT + QA V F +
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 403 EQATEALVCKHASS-----LGGSIIRISFSQLQSIREN 435
QA ++V +ASS + G + I +S Q I N
Sbjct: 65 NQAI-SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNN 101
>gi|386768307|ref|NP_001246424.1| smooth, isoform J [Drosophila melanogaster]
gi|294610694|gb|ADF27164.1| MIP20740p [Drosophila melanogaster]
gi|383302596|gb|AFH08177.1| smooth, isoform J [Drosophila melanogaster]
Length = 464
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 225 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 284
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 285 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 344
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 345 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 404
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 405 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 437
>gi|281363807|ref|NP_725915.2| smooth, isoform I [Drosophila melanogaster]
gi|25009665|gb|AAN71009.1| AT01055p [Drosophila melanogaster]
gi|272432577|gb|AAM68422.2| smooth, isoform I [Drosophila melanogaster]
Length = 420
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 181 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 240
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 241 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 300
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 301 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 360
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 361 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 393
>gi|24655867|ref|NP_725914.1| smooth, isoform B [Drosophila melanogaster]
gi|21626941|gb|AAM68421.1| smooth, isoform B [Drosophila melanogaster]
gi|257286259|gb|ACV53076.1| FI03683p [Drosophila melanogaster]
Length = 404
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 165 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 224
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 225 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 284
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 285 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 344
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 345 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 377
>gi|194755565|ref|XP_001960054.1| GF13176 [Drosophila ananassae]
gi|190621352|gb|EDV36876.1| GF13176 [Drosophila ananassae]
Length = 421
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 182 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDSVAVERCV 241
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 242 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 301
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 302 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFPNISQA 361
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 362 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 394
>gi|194881391|ref|XP_001974831.1| GG20899 [Drosophila erecta]
gi|190658018|gb|EDV55231.1| GG20899 [Drosophila erecta]
Length = 423
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 184 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 243
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 244 QHLNNIPVGSGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 303
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 304 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 363
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 364 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 396
>gi|198417515|ref|XP_002126298.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
[Ciona intestinalis]
Length = 293
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V LN +++ D++FN+ LYGN++++K L++KP A+VQMGD A+ L G
Sbjct: 85 LMVYGLNPEKMTCDRVFNILCLYGNVMKVKFLKSKPGTAMVQMGDPSAVGRAISNLSGMK 144
Query: 307 LFGKRLEVNFSKHPNITQGADTH----------EYMNSNLNRF--NRNAAKNYRYCCSPT 354
F ++L + SK +T ++ NS NRF N AAKN +P
Sbjct: 145 FFDEKLVLAPSKQLYLTDTGPVGDLPNGTPAQVDFGNSRNNRFQTNEQAAKN--RIQNPA 202
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEALV 410
K++H P ++ EE++ +E + K + + L+ F+T+ QA E L
Sbjct: 203 KVLHYYNAPLELNEEKMKEICQEFDLALPVKFTPFKTRSERSSSGLMEFDTKAQAMEVLT 262
>gi|403358967|gb|EJY79143.1| Polypyrimidine tract binding protein, putative [Oxytricha
trifallax]
Length = 479
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 103/197 (52%), Gaps = 36/197 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQ-PFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+P+KV+ +RN+ +++E +L+++ +G + K++++
Sbjct: 96 KPTKVLFLRNLPKDVTEQELMRVLSYQYGFVEKVLIM----------------------- 132
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ-GRGDEPNRILLVTIHHMLYPITVEVLHQV 120
I+ + ++QF S + T +Q ++ + + +++LLV+I ++ YP+ +VL +
Sbjct: 133 ------IQKAHAFIQFDSLETATKQQQESEVNQPLQDSKVLLVSITNIKYPVNADVLFTI 186
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQ----LDIQFSN 176
F +G ++IV F + G QAL+++Q A + L G+ +Y G Q + IQFS
Sbjct: 187 FQKYGDPQRIVIFPRQQGEQALVEFQTFEQAKKVKLLLDGQGMY-GVSQPANVMKIQFSE 245
Query: 177 LDELQVNYNNERSRDFT 193
L +L++N ++RDFT
Sbjct: 246 LQKLEINTQTLKARDFT 262
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YGN++R+K+L NK + AL++ D QA+ A FL G F ++VNFSK+
Sbjct: 382 LFKLFGIYGNVLRVKILFNKRETALIEFEDINQAKTAKQFLNGIQFFSTNIQVNFSKN 439
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 332 MNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
+ SN+ F + N + PTK++ L LP+DVTE+E++ L V K+ M
Sbjct: 76 IQSNMKSFINDKQSNQNHQFKPTKVLFLRNLPKDVTEQELMRVLSYQYGFVE-KVLIMIQ 134
Query: 392 KKQALVLFETEEQATE 407
K A + F++ E AT+
Sbjct: 135 KAHAFIQFDSLETATK 150
>gi|442624275|ref|NP_001261094.1| smooth, isoform AC [Drosophila melanogaster]
gi|440214534|gb|AGB93626.1| smooth, isoform AC [Drosophila melanogaster]
Length = 301
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 62 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 121
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 122 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 181
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 182 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 241
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 242 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 274
>gi|302798557|ref|XP_002981038.1| hypothetical protein SELMODRAFT_420643 [Selaginella moellendorffii]
gi|300151092|gb|EFJ17739.1| hypothetical protein SELMODRAFT_420643 [Selaginella moellendorffii]
Length = 139
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 20/140 (14%)
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYR 348
M D FQ ELA L K L +N + +Y +++ N F + +N
Sbjct: 1 MSDAFQVELA-----SGLPQDKELNLN-----------QSWDYTDAHDNIFFPSFVRN-- 42
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATE 407
C P+ I++ LP VT+ E+++H HG I T++F GK +A V F T+EQATE
Sbjct: 43 -CRGPSPTIYVWGLPSGVTDAELITHFSPHGEIAATEVFASEEGKPRARVRFATKEQATE 101
Query: 408 ALVCKHASSLGGSIIRISFS 427
A+ CK S + GS IR++F+
Sbjct: 102 AVACKQYSVVNGSTIRLAFA 121
>gi|195335917|ref|XP_002034609.1| GM19822 [Drosophila sechellia]
gi|194126579|gb|EDW48622.1| GM19822 [Drosophila sechellia]
Length = 420
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 181 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 240
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 241 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 300
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 301 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 360
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 361 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 393
>gi|403370184|gb|EJY84954.1| Polypyrimidine tract binding protein, putative [Oxytricha
trifallax]
Length = 734
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 103/197 (52%), Gaps = 36/197 (18%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQ-PFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
+P+KV+ +RN+ +++E +L+++ +G + K++++
Sbjct: 351 KPTKVLFLRNLPKDVTEQELMRVLSYQYGFVEKVLIM----------------------- 387
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQ-GRGDEPNRILLVTIHHMLYPITVEVLHQV 120
I+ + ++QF S + T +Q ++ + + +++LLV+I ++ YP+ +VL +
Sbjct: 388 ------IQKAHAFIQFDSLETATKQQQESEVNQPLQDSKVLLVSITNIKYPVNADVLFTI 441
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQ----LDIQFSN 176
F +G ++IV F + G QAL+++Q A + L G+ +Y G Q + IQFS
Sbjct: 442 FQKYGDPQRIVIFPRQQGEQALVEFQTFEQAKKVKLLLDGQGMY-GVSQPANVMKIQFSE 500
Query: 177 LDELQVNYNNERSRDFT 193
L +L++N ++RDFT
Sbjct: 501 LQKLEINTQTLKARDFT 517
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YGN++R+K+L NK + AL++ D QA+ A FL G F ++VNFSK+
Sbjct: 637 LFKLFGIYGNVLRVKILFNKRETALIEFEDINQAKTAKQFLNGIQFFSTNIQVNFSKN 694
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
+L ++LE++F K I SN+ F + N + PTK++ L LP
Sbjct: 313 SSLNLSQQLEMSFEKSSAI----------QSNMKSFINDKQSNQNHQFKPTKVLFLRNLP 362
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
+DVTE+E++ L V K+ M K A + F++ E AT+
Sbjct: 363 KDVTEQELMRVLSYQYGFV-EKVLIMIQKAHAFIQFDSLETATK 405
>gi|116007726|ref|NP_001036561.1| smooth, isoform G [Drosophila melanogaster]
gi|386768323|ref|NP_001246431.1| smooth, isoform W [Drosophila melanogaster]
gi|386768325|ref|NP_001246432.1| smooth, isoform Y [Drosophila melanogaster]
gi|113194667|gb|ABI31106.1| smooth, isoform G [Drosophila melanogaster]
gi|383302604|gb|AFH08184.1| smooth, isoform W [Drosophila melanogaster]
gi|383302605|gb|AFH08185.1| smooth, isoform Y [Drosophila melanogaster]
Length = 260
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 21 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 80
Query: 300 HFLKGALL-FGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 81 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 140
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQA 405
P+K++H P +TE++++ + + +LF + ++ + L+ F QA
Sbjct: 141 RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQA 200
Query: 406 TEALV-CKHASSLGGS-----IIRISFSQLQSI 432
A++ C H G I+++ FS +S+
Sbjct: 201 VLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSM 233
>gi|158300590|ref|XP_320470.4| AGAP012054-PA [Anopheles gambiae str. PEST]
gi|157013233|gb|EAA00310.4| AGAP012054-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
++V L++ + DKLFNLF LYGN++RIK L+ K A+VQMGD E V L
Sbjct: 77 MMVYGLDNGTANTDKLFNLFCLYGNVVRIKFLKTKEGTAMVQMGDAIAVERCVQHLNNIP 136
Query: 307 LFGK-RLEVNFSKHPNITQGADTH----------EYMNSNLNRFNRNAAKNYRYCCSPTK 355
+ ++++ FSK +++ + + EY S NRF + P+K
Sbjct: 137 IGNDGKIQIAFSKQNFLSEVTNPYTLPDHTPSFKEYTGSKNNRFLSLTQASKNRIQPPSK 196
Query: 356 MIHLSTLPQDVTEEEIVSHL---EEHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV 410
++H P +T+E++++ + H S V ++F + ++ + LV F + A +A++
Sbjct: 197 ILHFFNTPPGLTDEQLIAAFGSNDCHPSQV--RMFPLKSERSSSGLVEFPSVALAVQAIM 254
Query: 411 -CKHAS 415
C H +
Sbjct: 255 KCNHTA 260
>gi|340708199|pdb|3S01|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein L (Hnrpl) From Mus Musculus At 2.15 A
Resolution
Length = 212
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D + V L+ + + D++FN+F LYGN+ ++K ++KP A V+ DG+ + A+ L
Sbjct: 3 DSPVLXVYGLDQSKXNCDRVFNVFCLYGNVEKVKFXKSKPGAAXVEXADGYAVDRAITHL 62
Query: 303 KGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCC 351
FG++ V SK P I G ++ S NRF+ AAKN
Sbjct: 63 NNNFXFGQKXNVCVSKQPAIXPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ-- 120
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATE 407
P+ ++H P +VTEE +E G T + +GK + L+ ++++ A E
Sbjct: 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALE 180
Query: 408 AL 409
L
Sbjct: 181 TL 182
>gi|357501943|ref|XP_003621260.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496275|gb|AES77478.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 618
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 57/238 (23%)
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L I
Sbjct: 399 VFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLRI 458
Query: 173 QFSNLDELQVNYNNERS----------------------RDFTNPNLPAEQKGRPSQSGY 210
+S +L + + + RS D+TNP LP
Sbjct: 459 SYSAHRDLNIKFQSNRSSLSICPGDDQVLLFYRLGVTEAWDYTNPMLP------------ 506
Query: 211 SEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSL 268
N +AI A + P VL++++ + + + D + +FS
Sbjct: 507 ----------VNHSAIEGAAQPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSA 556
Query: 269 YGNIIRIKLL-RNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
+G + +I + +N AL+Q D A A L+G ++ +L +++S+H ++
Sbjct: 557 FGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDL 614
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
R + + +LL +I +M Y +TV+V++ VFS G V+KI F+K+ QALIQY +A
Sbjct: 526 RIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAA 585
Query: 153 VARSSLQGRNIYD-GCCQLDIQFSNLDELQV 182
AR +L+G IYD G C+L + +S +L V
Sbjct: 586 AAREALEGHCIYDGGYCKLHLSYSRHTDLNV 616
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+V G IVNTK + QA V F
Sbjct: 11 FRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLA 70
Query: 407 EALV 410
EA V
Sbjct: 71 EAYV 74
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINA 57
PSKV+H+RN+ E SE +L++L PFG I TK + +NQA ++ P A
Sbjct: 17 PSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLAEA 72
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 45 LLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILL 102
L+ + D AI+ + +Y ++ +P +RG+ VY+Q+S+ E+ N + GD P +LL
Sbjct: 174 LIHVVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLL 229
Query: 103 VTIHHM-LYPITVEVLH-------QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-- 152
VTI + ++++V+H Q FS F + F + F L +L P +
Sbjct: 230 VTIEGVEAGDVSIDVIHLLVLLAWQDFSGVAFSTVMAGFLVTGRF--LSPPKLPPERIEP 287
Query: 153 --VARSSLQG 160
+ RS+LQG
Sbjct: 288 ETLRRSTLQG 297
>gi|312074919|ref|XP_003140185.1| hypothetical protein LOAG_04600 [Loa loa]
Length = 355
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D +++ ++ D + DKLFNL LYGN +IK +++K D A+ QMG Q + L
Sbjct: 141 DGPVMMIYGIDQDNFNCDKLFNLLCLYGNCNKIKFMKSKTDTAMAQMGSVRQVYTTIDNL 200
Query: 303 KGALLFGKRLEVNFSKHPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCS 352
G ++FG +L + SK + + D +Y NS R+
Sbjct: 201 HGTIIFGNKLALRPSKQQILHEIRDPFILPDGTPSYRDYTNSRNQRYTTPELAARNRIVK 260
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G+I K +F ++ + + F E+ATEA
Sbjct: 261 PTHVLHWYNAPVTMTEEKLKDLFVDKGAITPDKVVIFPQRSERSSAGICEFPNTERATEA 320
Query: 409 LV 410
L+
Sbjct: 321 LM 322
>gi|413955316|gb|AFW87965.1| hypothetical protein ZEAMMB73_428640 [Zea mays]
Length = 269
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 89 NAQGRGDEPNRILLVTIHHMLYP-ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQL 147
N + G+ +LLVTI + +T++V+H VFS G+V KI TF+K+AGFQALIQY
Sbjct: 142 NNKSPGETAGNVLLVTIEGVQSSDVTIDVIHMVFSAFGYVHKIATFEKAAGFQALIQYTD 201
Query: 148 RPSAVVARSSLQGRNI--------YDGCCQLDIQFSNLDELQVNYNNE 187
+A A+ SL GR+I CC L I FS +L + + ++
Sbjct: 202 AATASAAKESLDGRSIPSYLLPEHVTSCC-LRISFSAHKDLNIKFQSK 248
>gi|76156181|gb|AAX27410.2| SJCHGC07992 protein [Schistosoma japonicum]
Length = 224
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 127 VEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNN 186
V +IV F+KS QA++++ A A+ L G +I+ GCC L + ++ L V N+
Sbjct: 2 VLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGADIFPGCCTLKVDYARPARLTVPRND 60
Query: 187 ERSRDF--TNPNLPAEQKGRPSQS---GY---SEAGVAFPQMANAAAIAAAFG------- 231
+ + DF + +G Q+ GY S G + + +G
Sbjct: 61 QDNWDFEKCEYDPSCNYQGDHCQNSLLGYMDDSHYGYDYHYGPYPYDYSNDYGQPHPSEC 120
Query: 232 GGLPPG-----ITG-------TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR 279
+P G + G +N V++ N++ ++++ D++FN+ +YGN+IR+K LR
Sbjct: 121 KNMPMGPHNMTLNGARNKSRNSNSTSVVMLYNIDMNKMNCDRIFNILCIYGNVIRVKFLR 180
Query: 280 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
+K A+V+MGD A + L G G +L + SK
Sbjct: 181 SKEGSAMVEMGDADSATRLIRNLSGVSFMGNQLMIRNSK 219
>gi|313757918|gb|ADR78667.1| polypyrimidine tract-binding protein 1 [Matthiola longipetala
subsp. bicornis]
Length = 125
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A G+ E + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY
Sbjct: 48 ADGKKVETQSNVLLALIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDI 107
Query: 149 PSAVVARSSLQGRNIYDG 166
P+A +A+ +L+G IYDG
Sbjct: 108 PTAAMAKEALEGHCIYDG 125
>gi|226489711|emb|CAX75006.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+R + ++SE+++ L PFG I +++ R QAL++M + SA + +Y V
Sbjct: 42 SRVLHLRGLPPDVSESEVAMLAIPFGSIANMILTRKSCQALVEMDTLESAESMFGYYMTV 101
Query: 65 -QPTIRGRN-VYVQFSSHQELTTM-----------EQNAQ------GRGDEPNRILLVTI 105
P +RG+ + +QFS + LT E N Q D P +L + +
Sbjct: 102 CTPNLRGKYPIEMQFSKYSSLTNATTNNATLSAIEEANKQFVTFRCENEDSPKTVLHIHV 161
Query: 106 HHMLYPITVEVL--HQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
P+ + L F P G + ++V+F+K+ A +++ SA VA+ + G +
Sbjct: 162 EKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPL 221
Query: 164 YDGCCQLDI---QFSNLDELQVNYNNERSRDFT-NP 195
+ I +FS L+++ + SRDF NP
Sbjct: 222 FPMEYNFHILRTEFSRQSTLEIHREDNSSRDFVQNP 257
>gi|13879378|gb|AAH06666.1| Ptbp1 protein [Mus musculus]
Length = 151
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNR 341
M DG QA L + L L GK + SKH ++ +G + T +Y +S L+RF +
Sbjct: 1 MADGSQAHLVMSHLNAHKLHGKCFCITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKK 60
Query: 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
+KN++ P+ +HLS +P V+E+++ S +G +V F +K AL+ +
Sbjct: 61 PGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGS 120
Query: 402 EEQATEALVCKHASSLG-GSIIRISFSQ 428
E+A +AL+ H LG +R+SFS+
Sbjct: 121 VEEAVQALIELHNHDLGENHHLRVSFSK 148
>gi|170582500|ref|XP_001896157.1| hypothetical protein [Brugia malayi]
gi|158596690|gb|EDP34992.1| conserved hypothetical protein [Brugia malayi]
Length = 370
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D +++ ++ D + DKLFNL LYGN +IK +++K D A+ Q+G Q + L
Sbjct: 156 DGPVMMIYGIDQDNFNCDKLFNLLCLYGNCNKIKFMKSKTDTAMAQLGSVRQVYTTIDNL 215
Query: 303 KGALLFGKRLEVNFSKHPNITQGADT----------HEYMNSNLNRFNRNAAKNYRYCCS 352
G ++FG +L + SK + + D +Y NS R+
Sbjct: 216 HGTMIFGNKLALRPSKQQILHEIRDPFILPDGTPSYRDYTNSRNQRYTTPELAARNRIVK 275
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK--LFEMNGKKQA--LVLFETEEQATEA 408
PT ++H P +TEE++ + G++ K +F ++ + + F E+ATEA
Sbjct: 276 PTHVLHWYNAPVTMTEEKLKELFVDKGAVAPDKVVIFPQRSERSSAGICEFSNTERATEA 335
Query: 409 LVCKH----ASSLGGS--IIRISFS 427
L+ + S +G + I++++F+
Sbjct: 336 LMLANHTPVESPVGKAPYIVKLAFA 360
>gi|313757914|gb|ADR78665.1| polypyrimidine tract-binding protein 1 [Lepidium sativum]
Length = 116
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+A +A+ +L+
Sbjct: 43 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 102
Query: 160 GRNIYD-GCCQL 170
G IYD G C+L
Sbjct: 103 GHCIYDGGYCKL 114
>gi|222619099|gb|EEE55231.1| hypothetical protein OsJ_03108 [Oryza sativa Japonica Group]
Length = 523
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
GD L V + +LYP+T EVLHQV++ +G V V G +A + ++ A
Sbjct: 53 GDGAGAALRVQVSQVLYPVTSEVLHQVYNTYGAVAVQVLTTSPLGVEAFVWFRSSCDAER 112
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
ARS GRNIYDGCC LD+Q
Sbjct: 113 ARSVTNGRNIYDGCCLLDVQ 132
>gi|22535530|dbj|BAC10707.1| porin-like protein [Oryza sativa Japonica Group]
Length = 623
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
GD L V + +LYP+T EVLHQV++ +G V V G +A + ++ A
Sbjct: 53 GDGAGAALRVQVSQVLYPVTSEVLHQVYNTYGAVAVQVLTTSPLGVEAFVWFRSSCDAER 112
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
ARS GRNIYDGCC LD+Q
Sbjct: 113 ARSVTNGRNIYDGCCLLDVQ 132
>gi|37806432|dbj|BAC99625.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125603374|gb|EAZ42699.1| hypothetical protein OsJ_27267 [Oryza sativa Japonica Group]
Length = 401
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 67 TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF 126
++ + V+ + S++E TT +L VT+ H+LYP+T EVL QVFSP+G
Sbjct: 63 SVDSQKVFDEMPSNKEPTTAS------------VLHVTMSHVLYPVTAEVLLQVFSPYGA 110
Query: 127 VEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
E V Q + +A I ++L A AR +L G IY+GCC LD+++
Sbjct: 111 EEVRVYNQGTIQVEAFILFRLCQDATRAREALHGCCIYNGCCFLDVKY 158
>gi|218201133|gb|EEC83560.1| hypothetical protein OsI_29204 [Oryza sativa Indica Group]
Length = 260
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 67 TIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF 126
++ + V+ + S++E TT +L VT+ H+LYP+T EVL QVFSP+G
Sbjct: 63 SVHAQKVFDEMPSNKEPTTAS------------VLHVTMSHVLYPVTAEVLLQVFSPYGA 110
Query: 127 VEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
E V Q + +A I ++L A AR +L G IY+GCC LD+++
Sbjct: 111 EEVRVYNQGTIQVEAFILFRLCQDATRAREALHGCCIYNGCCFLDVKY 158
>gi|358254215|dbj|GAA54232.1| heterogeneous nuclear ribonucleoprotein L, partial [Clonorchis
sinensis]
Length = 561
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
N +LL T+ ++ +P+T++V+HQ+ S V +IV F+KS QA+++++ A + +
Sbjct: 181 NHVLLYTVFNVQHPVTLKVIHQITSMFAEVVRIVMFRKS-NIQAMVEFKSVEDARRVKQN 239
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPN 196
L G +IY GCC L + ++ L V N+E + DF N N
Sbjct: 240 LNGADIYSGCCTLKVDYARPTRLTVKRNDEDTWDFENNN 278
>gi|313237439|emb|CBY12627.1| unnamed protein product [Oikopleura dioica]
Length = 873
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 89 NAQGRGDE------------PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKS 136
N GR D+ P +LL+TI +YPIT ++L ++ S G V +IV F+K
Sbjct: 678 NRHGRDDDKKNEEDSKNPNPPGHVLLLTILDAMYPITTKLLERICSYAGPVLRIVIFRKK 737
Query: 137 AGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+ QA+I++ A A+++L G +IY GCC + ++++ L V N++ +RDF+ N
Sbjct: 738 S-VQAMIEFDSIVGAQRAKAALNGVDIYRGCCTIKVEYAKPQSLNVFKNDDNTRDFSVEN 796
Query: 197 LPAEQKGR 204
E K R
Sbjct: 797 RHHEGKFR 804
>gi|336244421|gb|AEI28160.1| polypyrimidine tract-binding protein 1 [Lobularia maritima]
Length = 126
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A G+ E + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY
Sbjct: 45 ADGKKVETQSNVLLALIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYADI 104
Query: 149 PSAVVARSSLQGRNIYDG 166
+A +A+ +L+G IYDG
Sbjct: 105 ATAAIAKEALEGHCIYDG 122
>gi|76155644|gb|AAX26933.2| SJCHGC05534 protein [Schistosoma japonicum]
Length = 219
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 87/170 (51%), Gaps = 19/170 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + ++ + Y
Sbjct: 49 PSRVIHIRNMPADATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEESVQLVAHYLK 108
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQ------------------GRGDEPNRILLVTI 105
T+ G+++ QFS+H L + +N + PN +L V I
Sbjct: 109 YPVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVI 168
Query: 106 HHML-YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+++ I +L+++F G + +++ F ++ ++ L+++Q A VA
Sbjct: 169 DNIMGQQINHVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVA 218
>gi|449673467|ref|XP_002159702.2| PREDICTED: nucleolysin TIAR-like [Hydra magnipapillata]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN-----KPDHALVQMG 290
P + GT+ ++ NL+ D IDE+ L F ++G I+ IK++R+ + A +
Sbjct: 100 PKVIGTS--VSIYCGNLD-DTIDEEDLKAAFEVFGEILNIKVVRDPVTNHSKNIAFISFT 156
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
+ AE A+ + GA+L + ++ N++ N N + ++ + Y+
Sbjct: 157 NKPDAEKAIREMHGAMLKTRAIKTNWATR-------------NQNQKKEEQDYDEVYKGA 203
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
+ ++ +P + TEE+I SH +++G IV+ ++F K A + F+T A A+
Sbjct: 204 SADNTTVYAGGIPSNCTEEQIRSHFDDYGKIVDVRIFA--AKNYAFIKFDTHANAATAIC 261
Query: 411 CKHASSLGGSIIR 423
+ + L GS ++
Sbjct: 262 KSNGTELVGSCLK 274
>gi|226481685|emb|CAX73740.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 356
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 136/307 (44%), Gaps = 46/307 (14%)
Query: 151 AVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT----NPNLPAEQKGRPS 206
A A+ L G +I+ GCC L + ++ L V N++ + DF +P+ +G
Sbjct: 10 ARKAKLHLNGADIFPGCCTLKVDYARPARLTVPRNDQDNWDFEKCEYDPS--CNYQGDHC 67
Query: 207 QS---GY---SEAGVAFPQMANAAAIAAAFG-------GGLPPG-----ITG-------T 241
Q+ GY S G + + +G +P G + G +
Sbjct: 68 QNSLLGYMDDSHYGYDYHYGPYPYDYSNDYGQPHPSECKNMPMGPHNMTLNGARNKSRNS 127
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
N V++ N++ ++++ D++FN+ +YGN+IR+K LR+K A+V+MGD A +
Sbjct: 128 NSTSVVMLYNIDMNKMNCDRIFNILCIYGNVIRVKFLRSKEGSAMVEMGDADSATRLIRN 187
Query: 302 LKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCS--------- 352
L G G +L + SK I + + + + + + + +N RY S
Sbjct: 188 LSGVSFMGNQLMIRNSKQDVILDVSSPFQLPDGSPSFKDFSKDRNNRYTTSIMAKKNRVY 247
Query: 353 -PTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLFEMNGKKQA--LVLFETEEQATE 407
P++ +H P ++ ++ +++ G+ + + F K + + + T+ +A E
Sbjct: 248 PPSRTLHYWNAPPKISNNALLELVKKCGASEPQHIEQFSKTSDKSSSGFLKWATDTEAFE 307
Query: 408 AL-VCKH 413
AL +C H
Sbjct: 308 ALALCNH 314
>gi|218199201|gb|EEC81628.1| hypothetical protein OsI_25154 [Oryza sativa Indica Group]
Length = 209
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
GD+ +L V + +LY +T EVLHQV++ +G V V G +A + ++ A
Sbjct: 41 GDDAGAVLHVQVSQVLYSVTGEVLHQVYNTYGAVAVQVLTTSPWGVEASVWFRSTCDAER 100
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
ARS GRNIYDGCC LD+Q
Sbjct: 101 ARSVTNGRNIYDGCCLLDVQ 120
>gi|149617177|ref|XP_001520054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Ornithorhynchus anatinus]
Length = 203
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 69 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 128
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV H+ F
Sbjct: 129 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITV---HEAF 180
>gi|313757916|gb|ADR78666.1| polypyrimidine tract-binding protein 1 [Iberis amara]
Length = 120
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A G+ E + +LL I +M Y +TV+VLH VFS +G ++KI F+K+ QALIQY
Sbjct: 44 ADGKKIETQSNVLLALIENMQYAVTVDVLHTVFSAYGTLQKIAIFEKNGSTQALIQYSDJ 103
Query: 149 PSAVVARSSLQGRNIYD 165
P+A +A+ +L+G IYD
Sbjct: 104 PTAQIAKEALEGHCIYD 120
>gi|125589639|gb|EAZ29989.1| hypothetical protein OsJ_14050 [Oryza sativa Japonica Group]
gi|218194466|gb|EEC76893.1| hypothetical protein OsI_15106 [Oryza sativa Indica Group]
Length = 201
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
++L VT ++LYP+T ++LH+VF +G +KI +Q +A +Q+Q R A AR +
Sbjct: 20 EQVLHVTASNLLYPVTKDLLHRVFYAYG-AKKICLYQMETRVEASVQFQSREDAEYARKT 78
Query: 158 LQGRNIYDGCCQLDIQ 173
G NIY GCCQ+D Q
Sbjct: 79 FHGHNIYHGCCQMDFQ 94
>gi|146197853|dbj|BAF57638.1| hnRNP L protein [Dugesia japonica]
Length = 543
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 22 LLQLFQPFGVITKLVMLRAKNQALLQMQD--VPSAINALQFYTNVQP-TIRGRNVYVQFS 78
L +F G + +++M+ AL++ + +PS L + + + P I +V + FS
Sbjct: 4 LKSVFNNHGPVDRILMIN-NTSALVEFTNNKIPSD---LVYDSKISPFKIGVHDVKLSFS 59
Query: 79 --SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKS 136
S E ++ + GR ++L I + +Y ITV+VL+++ SP+G V +I +K+
Sbjct: 60 QQSIDEFKSISKPNFGRN--ITKVLHFLITNAVYSITVDVLNKICSPYGKVARIYIGKKN 117
Query: 137 A---GFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT 193
+ALI++ A + + +L G +IY GCC L + +S + ++ V N+ S D+T
Sbjct: 118 DQDNSIEALIEFSTDNDAKIVKENLDGNDIYSGCCSLKLSYSKIHKIHVEKNDSESFDYT 177
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 254 SDRIDEDKLFNLFSLYGNIIRIKL-LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRL 312
S +I D LFNLF LYGN+ +IK+ L A VQM + +E + L G LF K+L
Sbjct: 287 SSKIKPDNLFNLFCLYGNVEKIKMGLETGQKSAFVQMSNREGSEFCL-MLNGITLFNKQL 345
Query: 313 EVNFSKHPNITQGADTHEYMNSNLNRF-NR--NAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
E++ K IT + + + + F NR ++ + P++ +H +P T E
Sbjct: 346 EISICKFTEITDAIPNKDPVQTYYSDFYNRFKSSFSSKSKVFFPSQTLHFFNVPSTFTAE 405
Query: 370 EI 371
EI
Sbjct: 406 EI 407
>gi|123491774|ref|XP_001325911.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908818|gb|EAY13688.1| hypothetical protein TVAG_371620 [Trichomonas vaginalis G3]
Length = 412
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 161/379 (42%), Gaps = 38/379 (10%)
Query: 42 NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTME-QNAQGRGDEPNRI 100
NQALLQ A N +Q N + I NV ++FS EL + ++ G +
Sbjct: 53 NQALLQFVTSKDARNYIQ---NERKIIDELNVKIEFSIIPELIYDDFESIPGAS----LV 105
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
+ V ++ + + + ++ S G V+KI+ F+KS F AL+Q A +A +L
Sbjct: 106 ICVQVNRLRLYLGIYDIYDQCSLFGTVDKIICFEKSGKF-ALVQMHTIQDAGLALYNLSN 164
Query: 161 RNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE-QKGRPSQSGYSEAGVAFPQ 219
++ +L IQFS ++ + +NN +S DFT P+ E ++ R + SE G P+
Sbjct: 165 CERHNPSFKLRIQFSKNHDIVIKFNNTKSFDFTQPSARLEFEQNR--EIAMSELGFFEPE 222
Query: 220 MANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI--IRIKL 277
+I F P + C LV + D ++ LF YG I +R
Sbjct: 223 --RDESIPQQFDLFRPVDFDPSFSNC-CLVRGFHVTTNPCDSIYALFRQYGRITSVRCSA 279
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLN 337
+R +LV + F A ++ + L+ + L + I + L+
Sbjct: 280 VRGNGSISLVFFKESFCARMSQYMLQNLNISNDTLAIELVTEAEIPS-------LGIELS 332
Query: 338 RFNRNAAKNYRYC-CSPTKMIHLSTLP------QDVTEEEIVSHLEEHGSIVNTKLF--- 387
+ N +++Y C P+K + ++ P Q+ + I + E SI N LF
Sbjct: 333 KDYSNLSESYEESYCPPSKYVRITPNPGNLEKFQNSDGKLINDGIAEFSSIENASLFITM 392
Query: 388 ----EMNGKKQALVLFETE 402
++NG+K + FE +
Sbjct: 393 NSLKDLNGEKYYITYFEKD 411
>gi|349804153|gb|AEQ17549.1| putative heterogeneous nuclear ribonucleoprotein l isoform 2
[Hymenochirus curtipes]
Length = 228
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302
D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + H L
Sbjct: 146 DSPVLMVYGLDPSKMNCDRVFNIFCLYGNVEKVKFMKSKPGAAMVEMADGYSVDRDTH-L 204
Query: 303 KGALLFGKRLEVNFSKHPNITQG 325
+FG++L V SK +I G
Sbjct: 205 NNNFMFGQKLSVCVSKQQSIVPG 227
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+HVR + + E DL + Q FG I+ +V++ K Q L++ +D+ A NA+ +
Sbjct: 6 TPASPVVHVRGLIDGVVEADLAEALQEFGTISYVVVMPKKRQ-LVEFEDILGACNAVNYA 64
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQG 92
+ Q + G +V +S+ Q+++ G
Sbjct: 65 ADNQIYVAGHPAFVNYSTSQKISGPHAGYHG 95
>gi|355714182|gb|AES04921.1| polypyrimidine tract binding protein 2 [Mustela putorius furo]
Length = 121
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 16 EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75
E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+ V P +R + +Y+
Sbjct: 14 EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 73
Query: 76 QFSSHQEL---TTMEQNAQG 92
Q+S+H+EL T+ Q AQ
Sbjct: 74 QYSNHKELKTDNTLNQRAQA 93
>gi|47497548|dbj|BAD19620.1| porin-like protein [Oryza sativa Japonica Group]
gi|47847590|dbj|BAD21977.1| porin-like protein [Oryza sativa Japonica Group]
Length = 747
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + +LYP+T EVLHQV++ +G V V G +AL+ ++ A ARS
Sbjct: 67 LRVQVSRVLYPVTGEVLHQVYNDYGAVAVQVLATSCWGVEALVWFRSSCDAERARSDTNE 126
Query: 161 RNIYDGCCQLDIQ 173
RNIYDGCC LD+Q
Sbjct: 127 RNIYDGCCLLDVQ 139
>gi|222622846|gb|EEE56978.1| hypothetical protein OsJ_06706 [Oryza sativa Japonica Group]
Length = 647
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + +LYP+T EVLHQV++ +G V V G +AL+ ++ A ARS
Sbjct: 67 LRVQVSRVLYPVTGEVLHQVYNDYGAVAVQVLATSCWGVEALVWFRSSCDAERARSDTNE 126
Query: 161 RNIYDGCCQLDIQ 173
RNIYDGCC LD+Q
Sbjct: 127 RNIYDGCCLLDVQ 139
>gi|222623816|gb|EEE57948.1| hypothetical protein OsJ_08670 [Oryza sativa Japonica Group]
Length = 353
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
RGD +L VT+ ++YP+T EVLHQV++ +G V V + +AL+ + A
Sbjct: 151 RGDSAA-VLRVTVSQIIYPVTSEVLHQVYNTYGAVAVQVLAVSTWQVKALVSFMSSHDAE 209
Query: 153 VARSSLQGRNIYDGCCQLDIQ 173
ARS+ GR+IYDG C +D+Q
Sbjct: 210 RARSATHGRDIYDGGCLMDVQ 230
>gi|218191723|gb|EEC74150.1| hypothetical protein OsI_09231 [Oryza sativa Indica Group]
Length = 609
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E + RGD +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ +
Sbjct: 44 EMSTCPRGDSAA-VLRVTVSQIIYPVTYEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFM 102
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
A ARS+ GR+IYDG C LD+Q
Sbjct: 103 SSHDAERARSATHGRDIYDGGCLLDVQ 129
>gi|357501945|ref|XP_003621261.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496276|gb|AES77479.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 592
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 120 VFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLDI 172
VFS GFV KI TF+K+AGFQALIQ+ +A AR +L GR+I + G C L I
Sbjct: 399 VFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLRI 458
Query: 173 QFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQM--ANAAAIAAAF 230
+S +L + + + RS P +Q + G +EA M N +AI A
Sbjct: 459 SYSAHRDLNIKFQSNRSSLSICPG--DDQVLLFYRLGVTEAWDYTNPMLPVNHSAIEGAA 516
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALV 287
+ P VL++++ + + + D + +FS +G + +I + +N AL+
Sbjct: 517 QPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALI 576
Query: 288 Q 288
Q
Sbjct: 577 Q 577
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 80 HQELTTMEQNAQG----RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK 135
H + Q A G R + + +LL +I +M Y +TV+V++ VFS G V+KI F+K
Sbjct: 509 HSAIEGAAQPAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEK 568
Query: 136 SAGFQALIQY 145
+ QALIQY
Sbjct: 569 NGQTQALIQY 578
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + +EEE+V G IVNTK + QA V F
Sbjct: 11 FRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLA 70
Query: 407 EALV 410
EA V
Sbjct: 71 EAYV 74
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINA 57
PSKV+H+RN+ E SE +L++L PFG I TK + +NQA ++ P A
Sbjct: 17 PSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLAEA 72
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 45 LLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILL 102
L+ + D AI+ + +Y ++ +P +RG+ VY+Q+S+ E+ N + GD P +LL
Sbjct: 174 LIHVVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDIPGNVLL 229
Query: 103 VTIHHM-LYPITVEVLH-------QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-- 152
VTI + ++++V+H Q FS F + F + F L +L P +
Sbjct: 230 VTIEGVEAGDVSIDVIHLLVLLAWQDFSGVAFSTVMAGFLVTGRF--LSPPKLPPERIEP 287
Query: 153 --VARSSLQG 160
+ RS+LQG
Sbjct: 288 ETLRRSTLQG 297
>gi|218190721|gb|EEC73148.1| hypothetical protein OsI_07178 [Oryza sativa Indica Group]
Length = 736
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + +LYP+T EVLHQV++ +G V V G +AL+ ++ A ARS
Sbjct: 67 LRVQVSRVLYPVTGEVLHQVYNGYGAVAVQVLATSCWGVEALVWFRSSCDAERARSDTNE 126
Query: 161 RNIYDGCCQLDIQ 173
RNIYDGCC LD+Q
Sbjct: 127 RNIYDGCCLLDVQ 139
>gi|47497054|dbj|BAD19106.1| unknown protein [Oryza sativa Japonica Group]
gi|47497776|dbj|BAD19876.1| unknown protein [Oryza sativa Japonica Group]
Length = 430
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E + RGD +L VT+ ++YP+T EVLHQV++ +G V V + +AL+ +
Sbjct: 44 EMSTCPRGDS-AAVLRVTVSQIIYPVTSEVLHQVYNTYGAVAVQVLAVSTWQVKALVSFM 102
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
A ARS+ GR+IYDG C +D+Q
Sbjct: 103 SSHDAERARSATHGRDIYDGGCLMDVQ 129
>gi|52076844|dbj|BAD45786.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 264
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157
+R+L +T+ H++YP+ +LHQ+F + KI Q +A + +Q R +A A +
Sbjct: 151 DRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTHVEASVPFQTRAAAEHAW-N 209
Query: 158 LQGRNIYDGCCQLDIQF 174
L GR IYDGCC LDIQ+
Sbjct: 210 LNGRAIYDGCCWLDIQW 226
>gi|297600029|ref|NP_001048354.2| Os02g0789700 [Oryza sativa Japonica Group]
gi|255671306|dbj|BAF10268.2| Os02g0789700, partial [Oryza sativa Japonica Group]
Length = 451
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E + RGD +L VT+ ++YP+T EVLHQV++ +G V V + +AL+ +
Sbjct: 65 EMSTCPRGDS-AAVLRVTVSQIIYPVTSEVLHQVYNTYGAVAVQVLAVSTWQVKALVSFM 123
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
A ARS+ GR+IYDG C +D+Q
Sbjct: 124 SSHDAERARSATHGRDIYDGGCLMDVQ 150
>gi|218191477|gb|EEC73904.1| hypothetical protein OsI_08733 [Oryza sativa Indica Group]
Length = 219
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E + RGD +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ +
Sbjct: 30 EMSTCARGDSAA-VLRVTVSQIIYPVTYEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFM 88
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
ARS+ GR+IYDG C LD+Q
Sbjct: 89 SSHDVERARSATHGRDIYDGGCLLDVQ 115
>gi|27820087|gb|AAO25069.1| GH05823p [Drosophila melanogaster]
Length = 311
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299
G ++V L+ D + DKLFNL LYGN+ RIK L+ K A+VQMGD E V
Sbjct: 165 GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV 224
Query: 300 HFLKG-ALLFGKRLEVNFSKHPNITQ----------GADTHEYMNSNLNRFNRNAAKNYR 348
L + G ++++ FSK +++ EY S NRF A +
Sbjct: 225 QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN 284
Query: 349 YCCSPTKMIHLSTLP 363
P+K++H P
Sbjct: 285 RIQPPSKILHFFNTP 299
>gi|218202676|gb|EEC85103.1| hypothetical protein OsI_32486 [Oryza sativa Indica Group]
Length = 378
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G L V ++H++YP++ V+HQVF+P+G V + + +A++ ++ A
Sbjct: 39 GSAAGAALHVQVNHLIYPVSTNVMHQVFNPYGAVAVQMLVVDAWRVEAIVWFRSTCDAEW 98
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
A++ L GRNIYDG C LD+Q
Sbjct: 99 AQAELHGRNIYDGGCVLDVQ 118
>gi|90079737|dbj|BAE89548.1| unnamed protein product [Macaca fascicularis]
Length = 140
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 302 LKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPT 354
L G ++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+
Sbjct: 4 LNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPS 63
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKH 413
+HLS +P V EE++ + G V K F+ K AL+ T E+A +AL+ H
Sbjct: 64 ATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLH 121
Query: 414 ASSLG-GSIIRISFSQ 428
+LG +R+SFS+
Sbjct: 122 NYNLGENHHLRVSFSK 137
>gi|222640340|gb|EEE68472.1| hypothetical protein OsJ_26874 [Oryza sativa Japonica Group]
Length = 900
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G L V ++H++YP++ V+HQVF+P+G V + + +A++ ++ A
Sbjct: 59 GSAAGAALHVQVNHLIYPVSTNVMHQVFNPYGAVAVQMLVVDAWRVEAIVWFRTTCDAEW 118
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
A++ L GRNIYDG C LD+Q
Sbjct: 119 AQAELHGRNIYDGGCVLDVQ 138
>gi|115475882|ref|NP_001061537.1| Os08g0322400 [Oryza sativa Japonica Group]
gi|113623506|dbj|BAF23451.1| Os08g0322400 [Oryza sativa Japonica Group]
gi|215767652|dbj|BAG99880.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 899
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G L V ++H++YP++ V+HQVF+P+G V + + +A++ ++ A
Sbjct: 59 GSAAGAALHVQVNHLIYPVSTNVMHQVFNPYGAVAVQMLVVDAWRVEAIVWFRTTCDAEW 118
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
A++ L GRNIYDG C LD+Q
Sbjct: 119 AQAELHGRNIYDGGCVLDVQ 138
>gi|222616796|gb|EEE52928.1| hypothetical protein OsJ_35552 [Oryza sativa Japonica Group]
Length = 702
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 40/189 (21%)
Query: 13 VGHEISENDLLQLFQPFGV------ITKLV--MLRAKNQALLQMQDVPSAINALQFYTNV 64
VGH +S+ D + L + + + + KLV +++ K L+ ++ S
Sbjct: 104 VGHTVSQTDFMDL-KTWAIKWASPTMEKLVDTLVQYKGTQLMDRDNMVS----------- 151
Query: 65 QPTIRG----RNVYVQFSSHQELTTMEQNAQGR---------GDEPNRI-------LLVT 104
+PTIRG ++ S ++ ++ + G G+ P+ + L V
Sbjct: 152 EPTIRGIPGQEARWMTHSGSSDVQRLDPSIGGGCTGGSCQVFGEMPSWLGAGAGAALHVQ 211
Query: 105 IHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIY 164
+ +LYP+T EVLHQV++ +G V V G +AL+ ++ ARS NIY
Sbjct: 212 VSQVLYPVTSEVLHQVYNGYGAVAVQVLATSCWGVEALVWFRSSCDTERARSDTNEHNIY 271
Query: 165 DGCCQLDIQ 173
DGCC LD+Q
Sbjct: 272 DGCCLLDVQ 280
>gi|71409156|ref|XP_806939.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70870824|gb|EAN85088.1| RNA-binding protein, putative, partial [Trypanosoma cruzi]
Length = 165
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
E S+VIH+RN+ +++ + L Q FG I +VMLR NQAL++M+ SA + F+
Sbjct: 74 EVSRVIHMRNITPNVTQLSIQNLVQNFGNIKHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 63 NV-QPTIRGRNVYVQFSSHQELTTMEQNAQ 91
I GR VY+++S+HQELT + ++
Sbjct: 134 QTGYAEIDGRRVYIRYSNHQELTATQHTSK 163
>gi|38637093|dbj|BAD03349.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 625
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G L V ++H++YP++ V+HQVF+P+G V + + +A++ ++ A
Sbjct: 53 GSAAGAALHVQVNHLIYPVSTNVMHQVFNPYGAVAVQMLVVDAWRVEAIVWFRTTCDAEW 112
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
A++ L GRNIYDG C LD+Q
Sbjct: 113 AQAELHGRNIYDGGCVLDVQ 132
>gi|38637585|dbj|BAD03867.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 380
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
++ V + +LYP+T EVLHQV P+G E I Q + +A + R +A AR L
Sbjct: 7 VIRVIVTRVLYPVTEEVLHQVLDPYGAGEMIFVVQFPSHVEAYATFLSRAAAEYARDILH 66
Query: 160 GRNIYDGCCQLDIQFSNL 177
G IY+ CC LDIQ L
Sbjct: 67 GHAIYNDCCWLDIQLEPL 84
>gi|123474487|ref|XP_001320426.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903231|gb|EAY08203.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 413
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 10/258 (3%)
Query: 57 ALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDE-PNRILLVTIHHMLYPITVE 115
AL+F ++ + G + FS + T+E + +R++ + I + + +
Sbjct: 66 ALKFISDFKSNQFGNYASISFSP---IPTLELPDYALAHQNASRVICLQILKLQISLGIY 122
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175
++ S +G VEKI+ F+K+ F AL+Q A +A ++L + Y Q+ IQ+S
Sbjct: 123 DIYDECSNYGTVEKIICFEKNGKF-ALVQMHDVKEAALALANLSNSSRYLPNFQIKIQYS 181
Query: 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP 235
+ ++ + +NN +S DFT+P A Q + + SE+ P ++ I+ F P
Sbjct: 182 HNQDIIIQFNNAKSFDFTHPGAIA-QFDQLRHTSSSESAFFTPDHSD--QISEVFDFWRP 238
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN-KPDHALVQMGDGFQ 294
+ + + ++ + R D L NL S YG + +IK+ +N + +A+VQM + F
Sbjct: 239 VPVDQPYAQL-IKITGFDDYRNIADGLHNLISQYGPVNKIKVFQNARQKYAVVQMVNPFY 297
Query: 295 AELAVHFLKGALLFGKRL 312
A L L+ RL
Sbjct: 298 ARLVTAHLQNCPYQNGRL 315
>gi|218197621|gb|EEC80048.1| hypothetical protein OsI_21748 [Oryza sativa Indica Group]
gi|222634991|gb|EEE65123.1| hypothetical protein OsJ_20190 [Oryza sativa Japonica Group]
Length = 777
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G L V ++H++YP++ V+HQVF+P+G V + + +A++ ++ A
Sbjct: 62 GSAAGAALHVQVNHLIYPVSTNVMHQVFNPYGAVAVQMLAVDAWRVEAIVWFRTTCDAEW 121
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
A+ L GRNIYDG C LD+Q
Sbjct: 122 AQDELHGRNIYDGGCVLDVQ 141
>gi|324528885|gb|ADY48963.1| Polypyrimidine tract-binding protein 1 [Ascaris suum]
Length = 122
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSK +H+RN+ +++E +LL P+G + +ML+ KNQA ++ ++ A + +
Sbjct: 15 PSKGVHLRNIPSDMTELELLHFCMPYGKLVNYLMLKGKNQAFVEYEEEQGAQILVTMSSA 74
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRG 94
IR R ++ QFS+HQEL T ++ +G G
Sbjct: 75 CPVAIRDRTIFCQFSTHQELKT-DKRLRGSG 104
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+K +HL +P D+TE E++ +G +VN + + GK QA V +E EEQ + LV
Sbjct: 15 PSKGVHLRNIPSDMTELELLHFCMPYGKLVNYLM--LKGKNQAFVEYE-EEQGAQILV 69
>gi|24060162|dbj|BAC21278.1| porin-like [Oryza sativa Japonica Group]
gi|55296711|dbj|BAD69429.1| porin-like [Oryza sativa Japonica Group]
Length = 863
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G L V ++H++YP++ V+HQVF+P+G V + + +A++ ++ A
Sbjct: 62 GSAAGAALHVQVNHLIYPVSTNVMHQVFNPYGAVAVQMLAVDAWRVEAIVWFRTTCDAEW 121
Query: 154 ARSSLQGRNIYDGCCQLDIQ 173
A+ L GRNIYDG C LD+Q
Sbjct: 122 AQDELHGRNIYDGGCVLDVQ 141
>gi|125536532|gb|EAY83020.1| hypothetical protein OsI_38240 [Oryza sativa Indica Group]
Length = 791
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + +LYP+T EVLHQV++ +G V V +G +AL+ +Q A A+S
Sbjct: 549 LRVHVSQVLYPVTGEVLHQVYNAYGPVAVQVLATSGSGVEALVWFQTSCDAERAQSDTNE 608
Query: 161 RNIYDGCCQLDIQ 173
NIYDGCC LD+Q
Sbjct: 609 CNIYDGCCLLDVQ 621
>gi|125603171|gb|EAZ42496.1| hypothetical protein OsJ_27062 [Oryza sativa Japonica Group]
Length = 202
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
++ V + +LYP+T EVLHQV P+G E I Q + +A + R +A AR L
Sbjct: 7 VIRVIVTRVLYPVTEEVLHQVLDPYGAGEMIFVVQFPSHVEAYATFLSRAAAEYARDILH 66
Query: 160 GRNIYDGCCQLDIQFSNL 177
G IY+ CC LDIQ L
Sbjct: 67 GHAIYNDCCWLDIQLEPL 84
>gi|218194212|gb|EEC76639.1| hypothetical protein OsI_14581 [Oryza sativa Indica Group]
Length = 698
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + +LYP+T EVLHQV++ +G V V G +AL+ ++ A ARS
Sbjct: 67 LRVQVSQVLYPVTGEVLHQVYNGYGAVAVQVLATSCWGVEALVWFRSSCDAERARSDTNK 126
Query: 161 RNIYDGCCQLDIQ 173
RNIYDGCC D+Q
Sbjct: 127 RNIYDGCCLHDVQ 139
>gi|297608470|ref|NP_001061642.2| Os08g0364100 [Oryza sativa Japonica Group]
gi|255678392|dbj|BAF23556.2| Os08g0364100 [Oryza sativa Japonica Group]
Length = 220
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
++ V + +LYP+T EVLHQV P+G E I Q + +A + R +A AR L
Sbjct: 7 VIRVIVTRVLYPVTEEVLHQVLDPYGAGEMIFVVQFPSHVEAYATFLSRAAAEYARDILH 66
Query: 160 GRNIYDGCCQLDIQFSNL 177
G IY+ CC LDIQ L
Sbjct: 67 GHAIYNDCCWLDIQLEPL 84
>gi|222616398|gb|EEE52530.1| hypothetical protein OsJ_34752 [Oryza sativa Japonica Group]
Length = 555
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E ++ R D +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ +
Sbjct: 30 EMSSCPRADS-AAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFM 88
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
A ARS+ GR+IYDG C LD+Q
Sbjct: 89 SSHDAERARSATHGRDIYDGGCLLDVQ 115
>gi|218201041|gb|EEC83468.1| hypothetical protein OsI_28977 [Oryza sativa Indica Group]
Length = 220
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
++ V + +LYP+T EVLHQV P+G E I Q + +A + R +A AR L
Sbjct: 7 VIRVIVTRVLYPVTEEVLHQVLDPYGAGEMIFVVQFPSHVEAYATFLSRAAAEYARDILH 66
Query: 160 GRNIYDGCCQLDIQFSNL 177
G IY+ CC LDIQ L
Sbjct: 67 GHAIYNDCCWLDIQLEPL 84
>gi|125535222|gb|EAY81770.1| hypothetical protein OsI_36944 [Oryza sativa Indica Group]
Length = 1325
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E ++ R D +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ +
Sbjct: 769 EMSSCPRADS-AAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFM 827
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
A ARS+ GR+IYDG C LD+Q
Sbjct: 828 SSHDAERARSATHGRDIYDGGCLLDVQ 854
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146
E ++ R D +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ +
Sbjct: 30 EMSSCPRADS-AAVLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFM 88
Query: 147 LRPSAVVARSSLQGRNIYDGCCQLDIQ 173
ARS+ GR+IYDG C LD+Q
Sbjct: 89 SSHDVERARSATHGRDIYDGGCLLDVQ 115
>gi|344236923|gb|EGV93026.1| Ras and Rab interactor-like protein [Cricetulus griseus]
Length = 651
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
LF + + +I +K +++KP A+V+M DG+ + A+ L +FG+++ V SK P
Sbjct: 451 LFTILNPIYSITTVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 510
Query: 322 ITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
I G ++ S NRF+ AAKN P+ ++H P +VTEE
Sbjct: 511 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEVTEEN 568
Query: 371 IVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
+E G T + +GK + L+ ++++ A E L
Sbjct: 569 FFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 611
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQ 65
+V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ + + Q
Sbjct: 357 EVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQ 416
Query: 66 PTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITV 114
I G +V +S+ Q+++ + R N +LL TI + +Y IT
Sbjct: 417 IYIAGHPAFVNYSTSQKISRPGDSDDSRSV--NSVLLFTILNPIYSITT 463
>gi|167522112|ref|XP_001745394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776352|gb|EDQ89972.1| predicted protein [Monosiga brevicollis MX1]
Length = 459
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 181/450 (40%), Gaps = 76/450 (16%)
Query: 3 EPSKVIHVRNVGHEIS-ENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
EPS VI + N+ E+S +L L +G + + L+ K +AL + SA AL
Sbjct: 65 EPSPVILLSNL--EVSSRTELAALLSYYGPVRHMTFLKDKTKALAEYMSQASA-EALVAS 121
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+++ R+ V FSSH + + P+R+L + I + + T+E LH
Sbjct: 122 GSLRQF--NRSATVIFSSHDHIALALTRTNEVTNPPSRVLSINICNCPFDPTLEFLHAQM 179
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ +G V +IVT +K Q L +Y + A VA ++LQ + L
Sbjct: 180 ARYGQVLRIVTIRKDGDMQVLAEYAQQSEATVALNALQN-----------------ETLS 222
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGT 241
+ N +RDFT R +E V PQ
Sbjct: 223 IRNNTSSARDFTVNGATTSIVTRTDGQALAEMRVG-PQ---------------------- 259
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD-GFQAELAVH 300
TVL+ N + ++ L +YGN+ + ++ + L+Q D Q + H
Sbjct: 260 --HTTVLLHNWPTG-LNVHHAVALACVYGNVDKCVMVPSS-RTILIQFQDEAGQQAFSQH 315
Query: 301 FLKGALLFGKRLEVNFSKHPNI------------TQGADTHEYMNSNLNRFNRNAAKNYR 348
K LL G +L V SK + QG D + ++ L RF N
Sbjct: 316 VSKLQLL-GSQLNVTTSKQEELRVQSKRTLEDGSPQGVDVSK--DAKLRRFKPNERGGR- 371
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMNGK--KQALVLFETEEQ 404
P+ +H +PQ V+ E +++ + G+ V+ + GK + L+ F TE
Sbjct: 372 --TPPSNTLHFHNVPQAVSLETLLAAMAARGAPAPVSIRNLTQAGKPTQHGLLTFSTEHD 429
Query: 405 ATEALVCKHASSLGG---SIIRISFSQLQS 431
A A+V + L G I++++FS+ QS
Sbjct: 430 ALVAVVKANNMPLPGVADRILKVAFSRQQS 459
>gi|195151588|ref|XP_002016721.1| GL11732 [Drosophila persimilis]
gi|194110568|gb|EDW32611.1| GL11732 [Drosophila persimilis]
Length = 102
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VLH++ PHG V +IV F+K+ G QA++++ +A AR +L G +IY GCC L I +
Sbjct: 1 DVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADIYAGCCTLKIDY 59
Query: 175 SNLDELQVNYNNE--RSRDFT 193
+ ++L V Y NE S D+T
Sbjct: 60 AKPEKLNV-YKNEPDTSWDYT 79
>gi|194755561|ref|XP_001960052.1| GF13175 [Drosophila ananassae]
gi|190621350|gb|EDV36874.1| GF13175 [Drosophila ananassae]
Length = 97
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+VLH++ PHG V +IV F+K+ G QA++++ +A AR +L G +IY GCC L I +
Sbjct: 1 DVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADIYAGCCTLKIDY 59
Query: 175 SNLDELQVNYNNE--RSRDFT 193
+ ++L V Y NE S D+T
Sbjct: 60 AKPEKLNV-YKNEPDTSWDYT 79
>gi|77553333|gb|ABA96129.1| hypothetical protein LOC_Os12g10470 [Oryza sativa Japonica Group]
Length = 831
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + +LYP+T EVLHQV++ +G V V G +AL+ ++ ARS
Sbjct: 194 LHVQVSQVLYPVTSEVLHQVYNGYGAVAVQVLATSCWGVEALVWFRSSCDTERARSDTNE 253
Query: 161 RNIYDGCCQLDIQ 173
NIYDGCC LD+Q
Sbjct: 254 HNIYDGCCLLDVQ 266
>gi|449664731|ref|XP_002156267.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Hydra
magnipapillata]
Length = 361
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 22/189 (11%)
Query: 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN-----KPDHALVQMGDGFQAELAVH 300
T+ V +L+ D D + L F +G I+ K++R+ ++ + + AE A+
Sbjct: 72 TIFVGDLDDDLTDSE-LRQAFEPFGEILNAKVVRDAATEKSKNYGFISFTNKPDAERAIR 130
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
+ GA+L + ++ N++ N N + + ++ ++++
Sbjct: 131 DMHGAMLKRRPIKTNWATR-------------NQNSKPSQLDYDQVFKEVSESNCTVYVT 177
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
LP +++E +V H E+ G IV T ++F+ GK A + FE+ AT A+V + S L G
Sbjct: 178 NLPDRISDEVLVKHFEDCGKIVGTPRVFD--GKNFAFIRFESHAAATTAIVKGNGSELNG 235
Query: 420 SIIRISFSQ 428
+I++ + +
Sbjct: 236 AILKCWWGK 244
>gi|405951557|gb|EKC19460.1| Polypyrimidine tract-binding protein 1 [Crassostrea gigas]
Length = 323
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+ + NLN + I +KLFNLFSLYG + IKL K + LVQM A A+ L +
Sbjct: 169 LFIHNLNEESITTEKLFNLFSLYGRVDIIKLFFKKRNSGLVQMDTEEHAASALGHLDRVV 228
Query: 307 LFGKRLEVNFSKHPNITQGAD---THEYMNSNLNRFNRNAAKNYRY---CCSPTKMIHLS 360
+ K L + +S+ +I + T +Y S L+R + Y C+P+ +IH+S
Sbjct: 229 VQNKTLHIQYSRVKSINTDENFKMTADYRKSKLHR----GGVTFNYVMTACAPSAVIHMS 284
Query: 361 TLP 363
LP
Sbjct: 285 HLP 287
>gi|339254280|ref|XP_003372363.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967235|gb|EFV51692.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 284
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 37/151 (24%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+RN+ ++E +L+Q F +G I K+++L+ KNQ LQ + SA AL +
Sbjct: 104 SRVVHLRNLPSNLTEVELVQHFISYGKIEKVLLLKGKNQGFLQFATITSA-RALISAVDE 162
Query: 65 QPT-IRGRNVYVQFSSHQELTTM----------------EQNA-----QGRG-------- 94
P IRG+ ++ Q+S H L + +Q A Q RG
Sbjct: 163 NPVVIRGKTIFCQYSYHTVLDSQSRFSENKKHFSGLNLSDQEASLVTEQNRGILRGINNT 222
Query: 95 -DEPNR-----ILLVTIHHMLYPITVEVLHQ 119
P R +LLV + ++ Y +T+EVLHQ
Sbjct: 223 AAVPKRETGGTVLLVVVTNIFYAVTLEVLHQ 253
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 401
CS ++++HL LP ++TE E+V H +G I K+ + GK Q + F T
Sbjct: 101 CSISRVVHLRNLPSNLTEVELVQHFISYGKI--EKVLLLKGKNQGFLQFAT 149
>gi|402586462|gb|EJW80400.1| hypothetical protein WUBG_08691, partial [Wuchereria bancrofti]
Length = 229
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+RN+ ++++ +L+ P+G + ++LR +NQA ++ +D SA +
Sbjct: 128 SRVVHLRNIPSDMTDLELIHFCMPYGKLINYLLLRGRNQAFVEYEDERSAQTLVTVNIAC 187
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLV 103
IR R ++ QFS+HQEL T N + R D L++
Sbjct: 188 PVAIRDRTIFCQFSTHQELKT---NRRLRADSNGSNLII 223
>gi|308509800|ref|XP_003117083.1| hypothetical protein CRE_02201 [Caenorhabditis remanei]
gi|308241997|gb|EFO85949.1| hypothetical protein CRE_02201 [Caenorhabditis remanei]
Length = 273
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 53/82 (64%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T SKV+HVRN+ ++ + +L+QL +G ++ +ML+ K+QA ++ ++ SA +
Sbjct: 131 TPVSKVVHVRNIPPDLVDLELMQLCIQYGPVSNYMMLKGKSQAFVEYEEETSAAAFVTSM 190
Query: 62 TNVQPTIRGRNVYVQFSSHQEL 83
T V IRGR ++ Q+S+H+EL
Sbjct: 191 TAVPIQIRGRTLFAQYSTHREL 212
>gi|312107424|ref|XP_003150915.1| hypothetical protein LOAG_15376 [Loa loa]
gi|307753920|gb|EFO13154.1| hypothetical protein LOAG_15376, partial [Loa loa]
Length = 121
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S+V+H+RN+ ++++ +L+ P+G + ++L+ +NQA ++ +D SA +
Sbjct: 20 SRVVHLRNIPSDMTDLELVHFCMPYGKLVNYLLLKGRNQAFVEYEDERSAQTLVTVNIAC 79
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH 106
IR R ++ QFS+HQEL T N R D NR L+ H
Sbjct: 80 PVAIRDRTIFCQFSTHQELKT---NHHLRADS-NRSNLIIDH 117
>gi|297728967|ref|NP_001176847.1| Os12g0223500 [Oryza sativa Japonica Group]
gi|222616825|gb|EEE52957.1| hypothetical protein OsJ_35600 [Oryza sativa Japonica Group]
gi|255670154|dbj|BAH95575.1| Os12g0223500 [Oryza sativa Japonica Group]
Length = 297
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
RGD +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ + A
Sbjct: 57 RGDSA-AVLCVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAE 115
Query: 153 VARSSLQGRNIYDGCCQLDIQ 173
ARS+ G +IYD C LD+Q
Sbjct: 116 RARSTTHGHDIYDEGCLLDMQ 136
>gi|226487298|emb|CAX75514.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 197
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+RN+ + +EN++ PFG++ +V+ + NQAL++M + ++ + Y
Sbjct: 52 PSRVIHIRNMPADATENEIALFAIPFGLLKNMVLSKRNNQALIEMHVLEESVQLVAHYLK 111
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQN 89
T+ G+++ QFS+H L + +N
Sbjct: 112 YPVTLHGKHLIFQFSTHSHLELISEN 137
>gi|442761301|gb|JAA72809.1| Putative polypyrimidine tract-binding protein, partial [Ixodes
ricinus]
Length = 161
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
T +Y NS L+RF + +KN++ P+ +HLS +P V+E+++ +G +V F
Sbjct: 57 TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKILFSSNGGVVKGFKF 116
Query: 388 EMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+K AL+ + E+A +AL+ H+ LG +R+SFS+
Sbjct: 117 FQKDRKMALIQMGSVEEAIQALIDLHSHDLGENHHLRVSFSK 158
>gi|145517744|ref|XP_001444755.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412177|emb|CAK77358.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 218 PQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKL 277
PQ A I+ L P TV ++ + +D K++N+FS +GNI +I +
Sbjct: 134 PQSATVLPISQK----LIPSSKNIQSTKTVCLNGIQGKDLDALKIYNIFSNFGNIDKI-I 188
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ--GADT-----HE 330
L N + ALV+ QA + F L++ F+ +I + G DT
Sbjct: 189 LINLKNFALVKYLKEDQAYFVYQHCQNIQFFESNLQITFAADDSIEKLVGLDTLYREQDY 248
Query: 331 YMNS-NLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL-EEHGSIVNTKLFE 388
Y+ S + +RFN N N P++++H+S L + + E + + E+G + K+
Sbjct: 249 YIGSEDTDRFNAN---NKMILLPPSQVLHISNLKKVSSNAETMWDIFSEYGVVEAVKVLN 305
Query: 389 MNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
K LV E+ +QA E + H + G I+ISF++
Sbjct: 306 SQFKFMCLVKMESLKQALEIMALMHNEEVDGRNIQISFTK 345
>gi|262401121|gb|ACY66463.1| TIA-1-like protein [Scylla paramamosain]
Length = 325
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 22/199 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L S IDE L F ++G I K++++ + G GF AE ++
Sbjct: 91 VYVGDL-SPEIDEQALREAFQVFGEISDCKVVKDP--QSFKSRGYGFVVFVKKMDAETSI 147
Query: 300 HFLKGALLFGKRLEVNF-SKHPNITQGADTHEYMNSNLNR-FNRNAAKNYRYCCSPTKMI 357
+ G L K ++ + ++ P T E N + FN+ N C
Sbjct: 148 SAMNGQWLGRKMIKTRWATRKPANTPNETKPEQKKLNYDEVFNQTTPTNTTVFCG----- 202
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
L QD+TEE + + HG I K+F+ G A + + ++E A +A+V H S+L
Sbjct: 203 ---GLKQDITEEMLHKSFQPHGQIEKIKIFKEKG--YAFIKYTSKESACQAIVELHNSNL 257
Query: 418 GGSIIRISFSQLQSIRENS 436
G +IR S+ + + + S
Sbjct: 258 NGQMIRCSWGKDTGVDQTS 276
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ---------ALLQMQDVPSAINAL 58
++V ++ EI E L + FQ FG I+ +++ ++ D ++I+A+
Sbjct: 91 VYVGDLSPEIDEQALREAFQVFGEISDCKVVKDPQSFKSRGYGFVVFVKKMDAETSISAM 150
Query: 59 QFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRIL----LVTIHHMLYPITV 114
+ I+ R + ++ T EQ + N+ V + IT
Sbjct: 151 NGQWLGRKMIKTRWATRKPANTPNETKPEQKKLNYDEVFNQTTPTNTTVFCGGLKQDITE 210
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI 163
E+LH+ F PHG +EKI F K G+ A I+Y + SA A L N+
Sbjct: 211 EMLHKSFQPHGQIEKIKIF-KEKGY-AFIKYTSKESACQAIVELHNSNL 257
>gi|4099724|gb|AAD09652.1| PTBP2 [Homo sapiens]
Length = 93
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
PG++ + +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q+
Sbjct: 33 PGVSAGGN-TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 91
Query: 296 EL 297
+L
Sbjct: 92 QL 93
>gi|125535114|gb|EAY81662.1| hypothetical protein OsI_36830 [Oryza sativa Indica Group]
Length = 195
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 70 GRNVYVQFSSHQELTTMEQNAQGR-GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVE 128
G ++V +S E T R G + L V + H++YP++ +V+HQVF+P+G V
Sbjct: 20 GSGIWVMEASVMEAPTKCSMKPSRLGCGASAALHVQVSHLIYPVSTDVMHQVFNPYGAVA 79
Query: 129 KIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173
+ + +A+I ++ A+ L G NIYDG C LD+Q
Sbjct: 80 VQMLMVDAWRVEAIIWFRATCDVGRAQFDLHGHNIYDGGCVLDVQ 124
>gi|312376998|gb|EFR23934.1| hypothetical protein AND_11838 [Anopheles darlingi]
Length = 331
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 45/212 (21%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIR--------------------------IKLLRN 280
++V L++ + DKLFNLF LYGN++R IK L+
Sbjct: 68 MMVYGLDNGTANTDKLFNLFCLYGNVVRQQETEMGTTESEEEIQNGSSTGWVGGIKFLKT 127
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLFGK-RLEVNFSKHPNITQGADTH---------- 329
K A+VQMGD E V L + ++++ FSK +++ + +
Sbjct: 128 KEGTAMVQMGDAIAVERCVQHLNNIPIGNDGKIQIAFSKQNFLSEVTNPYTLPDHTPSFK 187
Query: 330 EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL---EEHGSIVNTKL 386
EY S NRF + P+K++H P +T+E+++ + H S V ++
Sbjct: 188 EYTGSKNNRFLSLTQASKNRIQPPSKILHFFNTPPGLTDEQLIQAFGMNDCHPSQV--RM 245
Query: 387 FEMNGKKQA--LVLFETEEQATEALV-CKHAS 415
F + ++ + LV F + A +A++ C H +
Sbjct: 246 FPLKSERSSSGLVEFPSVALAVQAIMKCNHTA 277
>gi|290986314|ref|XP_002675869.1| polypyrimidine tract-binding protein [Naegleria gruberi]
gi|284089468|gb|EFC43125.1| polypyrimidine tract-binding protein [Naegleria gruberi]
Length = 549
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH-ALVQMGDGFQAELAVHFL--- 302
+ ++ S++++ D +F LF +YG++IR K++ + P H A VQ D A+ A+ FL
Sbjct: 262 IQITGFTSNKVNCDVMFILFGVYGDVIRTKIVFSSPKHVAYVQFKDIDGAQRAIKFLGKN 321
Query: 303 -KGALLFGKRLEVNFSKHPNIT------QGADTHEYMNSNLNRFNRNAA----KNYRYCC 351
L+ +++ ++ I +G + Y+NS L+RF R +A KN +
Sbjct: 322 GTPCPLYNDFIDICYAPFQEIDESEPLEEGDEIKSYLNSPLHRFTRGSATGRLKNIEHVY 381
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGK---KQALVLFETEEQATE 407
P K++ +S + + + S + N K F K K L+ F T A
Sbjct: 382 PPNKVLCISNININSQNTTLESEFSRYNLKPENIKFFGHKQKLNTKMGLITFPTVNDAVT 441
Query: 408 ALVCKHASSLGGSIIRISFSQ 428
ALV H + I I+F+
Sbjct: 442 ALVECHDIKIDNFHININFAD 462
>gi|341903711|gb|EGT59646.1| hypothetical protein CAEBREN_28309 [Caenorhabditis brenneri]
Length = 488
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 298
TG C ++V + +I+ D +FN+ YGN++RI +R K + +++MG +
Sbjct: 192 TGGGPGCVLMVYGIEHSKINCDMMFNILCQYGNVLRISFMRTKVETGMIEMGTPDERHNV 251
Query: 299 VHFLKGALLFGKRLE--------VNFSKHPN-ITQGADT-HEYMNSNLNRFNRNAAKNYR 348
+ FL+G +FG +LE V+F + P + G+ + +Y +S RF +
Sbjct: 252 LDFLQGFSIFGLKLEFKPSHQECVHFLRDPFLLPDGSPSFKDYTSSRNQRFTTPELASKN 311
Query: 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQA--LVLFETEEQ 404
PT ++H P + E ++ L E + ++F ++ A FE+ E
Sbjct: 312 RIIFPTHVLHWFNAPGTMDENALLDLLAEKTEHKPLKIEVFPSRNERSAAGTAEFESVEI 371
Query: 405 ATEALV 410
A E L
Sbjct: 372 ANEVLA 377
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPN 196
+ G +IY GCC L ++F+ D ++V ++ RDFT P+
Sbjct: 1 MNGADIYSGCCTLKVEFAKPDRVRVVRQDKDQRDFTLPD 39
>gi|299469750|emb|CBN76604.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 515
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY- 61
EPSKV+HVRNVG+ + + DL+ L FG + KL M QAL+Q+ V A ++ Y
Sbjct: 225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYE 282
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTME 87
+ +P I + VY+ +S + + T +
Sbjct: 283 EDAEPKIGQKRVYLNYSRSRSIETRD 308
>gi|410931079|ref|XP_003978923.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Takifugu rubripes]
Length = 337
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 248 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 307
+VS L+ +++ ++FNLF LYGNI ++K +++ P ALV+MGD + + A+ L +
Sbjct: 94 MVSGLHPSKMNCTRIFNLFCLYGNIEKVKFMKSVPGTALVEMGDEYAVDRAITHLNSIKV 153
Query: 308 FGKR 311
FGKR
Sbjct: 154 FGKR 157
>gi|391332510|ref|XP_003740677.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 341
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 30/214 (14%)
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF------- 293
TN + V +L+SD ++ +L F+ +G I +++R+ G GF
Sbjct: 44 TNKHFHIFVGDLSSD-VETQQLREAFTPFGEISDCRVVRDP--QTQKSKGYGFVSFLRKQ 100
Query: 294 QAELAVHFLKGALLFGKRLEVNF-SKHP--------NITQGADTHEYMNSNLNRFNRNAA 344
AE A++ + G L G+ + N+ ++ P +QG T +Y + A
Sbjct: 101 DAETAINAMNGQWLGGRVIRTNWATRRPASNANNQQEGSQGNSTPKYTPLTFDEVYNQA- 159
Query: 345 KNYRYCCSPTK-MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEE 403
SPT ++ L Q ++EE I +G I ++F+ G A V F T+E
Sbjct: 160 -------SPTNCTVYCGGLGQGLSEELIQKTFSSYGIIQEIRVFKDKGY--AFVRFATKE 210
Query: 404 QATEALVCKHASSLGGSIIRISFSQLQSIRENSQ 437
AT A+V H + + G I++ S+ + S N Q
Sbjct: 211 SATHAIVAVHNTDVNGQIVKCSWGKESSDPNNQQ 244
>gi|77553984|gb|ABA96780.1| hypothetical protein LOC_Os12g12190 [Oryza sativa Japonica Group]
Length = 800
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 93 RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
RGD +L VT+ ++YP+T EVLHQV+ +G V V + +AL+ + A
Sbjct: 57 RGDS-AAVLCVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAE 115
Query: 153 VARSSLQGRNIYDGCCQLDIQ 173
ARS+ G +IYD C LD+Q
Sbjct: 116 RARSTTHGHDIYDEGCLLDMQ 136
>gi|145500278|ref|XP_001436122.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403261|emb|CAK68725.1| unnamed protein product [Paramecium tetraurelia]
Length = 350
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 305
TV ++ ++ +D KL+N+FS +GN+ +I +L N + ALV+ QA +
Sbjct: 160 TVCLNGISGKELDAHKLYNIFSNFGNVDKI-ILINLKNFALVKYLKEDQAYFVYQNCQNL 218
Query: 306 LLFGKRLEVNFSKHPNITQ--GADT-----HEYMNS-NLNRFNRNAAKNYRYCCSPTKMI 357
F L + F+ +I + G DT Y+ S + +RFN N N P++++
Sbjct: 219 SFFESSLTITFAADDSIEKLVGLDTLYRDQDYYVGSQDTDRFNPN---NKMILLPPSQVL 275
Query: 358 HLSTLPQDVTEEEIVSHL-EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
H+S L + + E + + E G + K+ K L+ ET +QA E + H
Sbjct: 276 HISNLKKVSSNAETMWDIFSEFGVVEAVKVLNSQFKFMCLIKMETLKQALEVMALMHNEE 335
Query: 417 LGGSIIRISFSQ 428
+ G I+ISF++
Sbjct: 336 VDGRNIQISFTK 347
>gi|328722647|ref|XP_003247624.1| PREDICTED: hypothetical protein LOC100571280 [Acyrthosiphon pisum]
Length = 487
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+LV L+ ++ D++FNLF LYGN+ +K+LR+ D LV++ D A V L
Sbjct: 92 LLVHGLDRVPVNCDRVFNLFCLYGNVTTVKILRD--DKVLVELEDAEAARRCVSNLHMLQ 149
Query: 307 LFGK-RLEVNFSKH------PNITQGADTHE----YMNSNLNRFNRNA-AKNYRYCCSPT 354
L + ++V +SKH N + AD Y++S LNRF N + + R +P+
Sbjct: 150 LDDEVHMKVKYSKHNFIHDQVNFNKLADGTPAQKVYLSSTLNRFIPNVLSPDKRRIAAPS 209
Query: 355 KMIHLSTLPQDV 366
K++H P DV
Sbjct: 210 KILHFFNAPTDV 221
>gi|322798025|gb|EFZ19869.1| hypothetical protein SINV_08848 [Solenopsis invicta]
Length = 112
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 81 QELTTMEQNAQGRGD---EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA 137
+E T + + A + +PN +LL TI + +YPITVEVLH + +P G V++IV F+K+
Sbjct: 34 KEKTIINRKASPKSKNNIKPNHVLLYTIMNPIYPITVEVLHTISAPSGQVQRIVIFKKN- 92
Query: 138 GFQALIQYQLRPSAVVARSS 157
G QA++++ SA+ A+ +
Sbjct: 93 GVQAMVKFDTVKSAIRAKET 112
>gi|170042026|ref|XP_001848743.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
gi|167865566|gb|EDS28949.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
Length = 167
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 298 AVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYC 350
A+ L ++ K + V SKH + + T +Y + L+RF + +KNY+
Sbjct: 26 AMTHLDKLRIWNKTIRVMASKHQAVQLPKEGQPDAGLTRDYAQNPLHRFKKPGSKNYQNI 85
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+ +HLS +P VTEEEI ++G V F K AL+ + E+A AL+
Sbjct: 86 YPPSATLHLSNIPATVTEEEIKEAFTKNGFEVKAFKFFPKDHKMALIQLSSIEEAVCALI 145
Query: 411 CKHASSLGGS-IIRISFSQ 428
H L S +R+SFS+
Sbjct: 146 KMHNYQLSESNHLRVSFSK 164
>gi|123500629|ref|XP_001327903.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121910839|gb|EAY15680.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 432
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 117 LHQVF---SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173
+H ++ S G VEKI+ F+K F AL+Q Q A + ++L N Y +L +Q
Sbjct: 120 IHDIYDECSHFGIVEKIICFEKQGKF-ALVQMQTVEQAALVLANLTIPNRYAPSFELRVQ 178
Query: 174 FSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS--------EAGVAFPQ---MAN 222
+S + + +NN +S DFT P A+++ + G + E P+
Sbjct: 179 YSKNANIVIQFNNSKSFDFTLPG--AKEQFELVKEGLTNEIPFFEPEPSPDIPKSFDFVR 236
Query: 223 AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIK-LLRNK 281
A+G L TG R N+F YG ++++K +L+
Sbjct: 237 PVQFDPAYGNSL--TTTGLPPRKASFAR-------------NIFQQYGIVLKVKVILKQN 281
Query: 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK----HPNITQGADTHEYMNSN 335
+QM + F A LA+ L GK+++V+ S HP + + +Y N
Sbjct: 282 ECTTHIQMRNAFYARLALTNLNSMTFNGKKIDVDLSTRRDVHPETNESKNQVDYQEYN 339
>gi|383856701|ref|XP_003703846.1| PREDICTED: uncharacterized protein LOC100878109 [Megachile
rotundata]
Length = 141
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
++PN +LL TI + +YPITVEVLH + +P G V++IV F+K+ G QA+++Y L+ +A
Sbjct: 40 NKPNHVLLFTIINPVYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVEYPLQCTA 95
>gi|346651972|pdb|3R27|A Chain A, Crystal Structure Of The First Rrm Domain Of Heterogeneous
Nuclear Ribonucleoprotein L (Hnrnp L)
gi|346651973|pdb|3R27|B Chain B, Crystal Structure Of The First Rrm Domain Of Heterogeneous
Nuclear Ribonucleoprotein L (Hnrnp L)
Length = 100
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 77
Query: 62 TNVQPTIRGRNVYVQFSSHQELT 84
+ Q I G +V +S+ Q+++
Sbjct: 78 ADNQIYIAGHPAFVNYSTSQKIS 100
>gi|198417513|ref|XP_002121186.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
[Ciona intestinalis]
Length = 106
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQL 147
D+PN++LL T+ + +YPIT +VLH + P G V++IV F+K G QA+I+Y L
Sbjct: 48 ADQPNKVLLFTVVNAVYPITTDVLHMICEPCGEVQRIVIFRKR-GVQAMIEYPL 100
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 21/190 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V +L+ D I+ +L F +G I K++R+ L G GF +AE A+
Sbjct: 88 IFVGDLSPD-IETPQLREAFKPFGTISDCKIIRDP--QTLKSKGYGFVSYVERKEAENAI 144
Query: 300 HFLKGALLFGKRLEVNFS-KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
+ + G + + + N++ + P +T+ + F +++ N C+ ++
Sbjct: 145 NSMNGQWIGSRAIRTNWAIRKPAAPATKETNAQPLTFDEVFKKSSPTN----CT----VY 196
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
+ +TE+ + S EHG I ++F+ G A + + T+E ATEA+V H + +G
Sbjct: 197 CGGILSGLTEDLVRSAFGEHGKIEEIRVFKDKG--YAFIRYNTKEAATEAIVKMHQTEVG 254
Query: 419 GSIIRISFSQ 428
G ++ S+ +
Sbjct: 255 GHTVKCSWGK 264
>gi|413955319|gb|AFW87968.1| hypothetical protein ZEAMMB73_683995, partial [Zea mays]
Length = 81
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
A GR E +LL +I +M Y +TV+VLH VFS G V+KI F+K+ G QALIQY
Sbjct: 24 ADGRQVEAQGNVLLASIENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGGTQALIQY 80
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 23/197 (11%)
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF------- 293
N+ V + N D +D+++L +FS YG I+ +K++ D + G GF
Sbjct: 186 ANEFTNVYIKNFGDD-MDDERLKEVFSQYGKIVSVKVM---TDSSGKSKGFGFVSFDTHE 241
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
A+ AV ++ G + G+ + V ++ Q + RF R C
Sbjct: 242 AAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGR---------CRG 292
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVC 411
K +++ L + + EE++ GS+ K+ E G+ + L+ F E+AT+A+
Sbjct: 293 VK-LYIKNLDETIDEEQLRRAFSSFGSMSRVKVMEEEGRSKGFGLICFSCPEEATKAMAE 351
Query: 412 KHASSLGGSIIRISFSQ 428
+ LG I I+ +Q
Sbjct: 352 MNGQVLGSKAINIALAQ 368
>gi|38346191|emb|CAE02036.2| OSJNBa0027O01.7 [Oryza sativa Japonica Group]
Length = 646
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + H++YP+T EVLHQV+ +G E + + +AL+ ++ R A AR + G
Sbjct: 23 LHVQVSHIIYPVTNEVLHQVYDIYGAEELHILVADAWRVEALVWFRARGGAEKARGATHG 82
Query: 161 RNIYDGCCQLDIQ 173
+IYDG C L+ Q
Sbjct: 83 HHIYDGGCLLEAQ 95
>gi|222628459|gb|EEE60591.1| hypothetical protein OsJ_13976 [Oryza sativa Japonica Group]
Length = 653
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + H++YP+T EVLHQV+ +G E + + +AL+ ++ R A AR + G
Sbjct: 23 LHVQVSHIIYPVTNEVLHQVYDIYGAEELHILVADAWRVEALVWFRARGGAEKARGATHG 82
Query: 161 RNIYDGCCQLDIQ 173
+IYDG C L+ Q
Sbjct: 83 HHIYDGGCLLEAQ 95
>gi|12851214|dbj|BAB28977.1| unnamed protein product [Mus musculus]
Length = 111
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KL 386
T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G V K
Sbjct: 8 TKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF 67
Query: 387 FEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F+ K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 68 FQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 108
>gi|145529810|ref|XP_001450688.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418310|emb|CAK83291.1| unnamed protein product [Paramecium tetraurelia]
Length = 372
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 58/295 (19%)
Query: 95 DEPNRILLVTIHHM--LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
D P++ILL+ I ++ +P+T + L F +G + KI+ F++ +A ++Y A+
Sbjct: 5 DPPSKILLLIISYLPPSFPLTNDYLFDTFKSYGEINKILIFERGKTNKAFVEYLNVKHAI 64
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQV---------NYNNERSRDFTNPNLPAEQKG 203
+AR +L G++I +L I FS L EL + +Y N N ++ K
Sbjct: 65 LARRNLMGKSISPEGGKLLIHFSRLKELNLEVVDQTRGTSYQNNEVETQLLLNHVSKIKI 124
Query: 204 RPSQSGYSEAGVAFPQM----ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSD---- 255
+ ++ V P + N ++ G P T + + L+ L+ D
Sbjct: 125 KNNKDNIESQKVQSPLVDQIHQNQMSVTQDLGES--PNKTIMDSQLKQLIQILDDDFNSE 182
Query: 256 -----------------------------------RIDEDKLFNLFSLYGNIIRIKLLRN 280
+I L+NLF+ +G++ + +L+
Sbjct: 183 IEKSQQIQFNHQQIIIDQLLYQKPSKYLIVSNIDVKITSKMLYNLFNRFGHLDSL-ILKK 241
Query: 281 KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-TQGADTHEYMNS 334
K A++Q + QA +A L F K L + F + + T D Y+ S
Sbjct: 242 KQQTAILQFTNSDQATIAKELLNNVQFFNKELRILFHQQSDFRTTNVDEELYIGS 296
>gi|349603323|gb|AEP99197.1| Polypyrimidine tract-binding protein 2-like protein, partial [Equus
caballus]
Length = 112
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 328 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KL 386
T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G V K
Sbjct: 9 TKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF 68
Query: 387 FEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
F+ K AL+ T E+A +AL+ H +LG +R+SFS+
Sbjct: 69 FQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 109
>gi|222630882|gb|EEE63014.1| hypothetical protein OsJ_17822 [Oryza sativa Japonica Group]
Length = 626
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + H++YP+T +VL+QV+ +G E + + + L+ ++ R A AR + G
Sbjct: 69 LHVQVSHIIYPVTNKVLYQVYDIYGAEELHILVVDAWRVEVLVWFRARGDAKKARGATHG 128
Query: 161 RNIYDGCCQLDIQ 173
RNIYDG C L+ Q
Sbjct: 129 RNIYDGGCLLEAQ 141
>gi|145478107|ref|XP_001425076.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392144|emb|CAK57678.1| unnamed protein product [Paramecium tetraurelia]
Length = 361
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 95 DEPNRILLVTIHHMLYPITV--EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
D PN+ILL+ ++ + T+ + +HQ F+ G + KI+ F+K +A +++ SA+
Sbjct: 7 DPPNKILLLILNSLPSSFTLNNQFIHQKFNQFGDINKILIFEKGKTTKAFVEFHELNSAI 66
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVN-YNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ L G NI G +++I FS L L + +N R D+T + Q + +
Sbjct: 67 QAKKQLNGCNIQGG--KMNIHFSRLKNLNLEIVDNSRGTDYTQAS-SNSQNSDSMLNSRT 123
Query: 212 EAGVAF-----------PQMANAAAIAAAFGGGLPPGITGTND----------------- 243
E + F P+ AN++ I L G +D
Sbjct: 124 EENIQFDLTNHISSTQSPR-ANSSPIRNEQINRLLESSDGEDDLKIWKQTMPLDIEEFHP 182
Query: 244 --------RCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
R + L+ LN D +I ++N+FS +GN+ I L A ++ Q
Sbjct: 183 EIQKLLQQRQSRLLKILNFDSKITAKMIYNVFSKFGNLEEI-LYEKSSSRAYIKYQSVNQ 241
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYM 332
A +A +L F ++ + F ++ EYM
Sbjct: 242 AIIAKEYLNNIQFFDSQIRIYFEPLQSLQPTTFQDEYM 279
>gi|218196425|gb|EEC78852.1| hypothetical protein OsI_19197 [Oryza sativa Indica Group]
Length = 388
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
L V + H++YP+T +VL+QV+ +G E + + + L+ ++ R A AR + G
Sbjct: 69 LHVQVSHIIYPVTNKVLYQVYDIYGAEELHILVVDAWRVEVLVWFRARGDAKKARGATHG 128
Query: 161 RNIYDGCCQLDIQ 173
RNIYDG C L+ Q
Sbjct: 129 RNIYDGGCLLEAQ 141
>gi|328792474|ref|XP_003251729.1| PREDICTED: hypothetical protein LOC100577881 [Apis mellifera]
Length = 120
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ-----LRP 149
++PN +LL TI + +YPITVEVLH + +P G V++IV F+K+ G QA+++Y LRP
Sbjct: 40 NKPNHVLLFTIINPVYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVEYPFAIHVLRP 98
>gi|242021295|ref|XP_002431080.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus
humanus corporis]
gi|212516329|gb|EEB18342.1| Heterogeneous nuclear ribonucleoprotein A1, putative, partial
[Pediculus humanus corporis]
Length = 302
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V +L S ID L + F+ +G I +++R+ L G GF +A+ A+
Sbjct: 4 IFVGDL-SPEIDTQTLRDAFAPFGEISDSRVVRDA--QTLKSKGYGFVSFIKKSEAKSAI 60
Query: 300 HFLKGALLFGKRLEVNF-SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
+ G L + + N+ ++ P+I + AD + S + + +A N C+ ++
Sbjct: 61 AAMNGRWLGSRSIRTNWATRKPSIIK-ADGNTLPLSFDEVYKQTSATN----CT----VY 111
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
+ +TEE + H +G+I K+F+ G A V F T+E A A+V H + +
Sbjct: 112 CGGITNGLTEELVQKHFSPYGTIQEIKVFKDKG--YAFVRFSTKESAAHAIVAVHNTEIN 169
Query: 419 GSIIRISFSQLQSIRENS 436
G ++ S+ +ENS
Sbjct: 170 GQTVKCSWG-----KENS 182
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 22/199 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V + +L S +D L + F+ +G + K++R+ L G GF +AE A+
Sbjct: 33 VFIGDL-SPEVDNKALKDAFAPFGEVSDAKVIRDST--TLKSKGYGFVSYPKREEAERAI 89
Query: 300 HFLKGALLFGKRLEVNF-SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
+ G L + + N+ ++ P T G + ++ + + FN+ N ++
Sbjct: 90 EQMNGQWLGRRTIRTNWATRKPTGTDGQQSKPELSYD-DVFNQTGPDN--------TSVY 140
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
+ + Q V +E++ + ++ G IV ++F+ G A V F+ ++ A A+V + + +G
Sbjct: 141 IGNVNQSVNDEDLRAAFDKFGRIVEVRIFKTQGF--AFVRFDKKDSACNAIVKMNGTEIG 198
Query: 419 GSIIRISFSQLQSIRENSQ 437
G ++ S+ + N Q
Sbjct: 199 GQTVKCSWGRTPEGHNNQQ 217
>gi|146164680|ref|XP_001013820.2| hypothetical protein TTHERM_00427410 [Tetrahymena thermophila]
gi|146145712|gb|EAR93575.2| hypothetical protein TTHERM_00427410 [Tetrahymena thermophila
SB210]
Length = 569
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+ V+ +S + ++FNLFS +GNI+++ +++K L++ A A L
Sbjct: 379 IYVNRFDSSKTTMQQIFNLFSAFGNIVKMIFMKSKS-AVLIEYSTVDFACQAKDLLSDTT 437
Query: 307 LFGKRLEVNFSKHPNI-----TQGADTHEYM--NSNLNRFNRNAAKNYRYCCSPTKMIHL 359
G +++ +S++ NI + + EY N LNRF +A +P +H+
Sbjct: 438 FNGNIIKIFYSRYENIFFKEAEEKPEDEEYFEPNEKLNRFKSDAQA---IINTPIDTLHI 494
Query: 360 STLP-QDVTEEEIVSHLEEHGSIVNTK-LFEMNGKKQALVLFETEEQATEALVCKHASSL 417
S + D E I E +G I K + E N K LV FET A L H +
Sbjct: 495 SNIRINDCNFETIKKITEPYGQIKKIKFMLEKNNKNMCLVKFETVSIAMWVLANVHNKMI 554
Query: 418 GGSIIRISFSQ 428
I+ISFS+
Sbjct: 555 SDRPIKISFSK 565
>gi|145527098|ref|XP_001449349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416937|emb|CAK81952.1| unnamed protein product [Paramecium tetraurelia]
Length = 339
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 13/192 (6%)
Query: 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 305
T+ VS + ID KL+N+FS +GNI +I L++ K + A V+ A +
Sbjct: 149 TLCVSGIKGKEIDAKKLYNIFSNFGNIDKILLIKIK-NFAFVKYLKNDNAIFVFQNCQQL 207
Query: 306 LLFGKRLEVNFSKHPNITQ--GADT-----HEYMNS-NLNRFNRNAAKNYRYCCSPTKMI 357
F + ++++ +I + G DT Y+ S + +RFN N N P++++
Sbjct: 208 EFFDSTISISYASDDSIDKLIGLDTLYQEQDYYIGSEDTDRFNCN---NKMILLPPSQVL 264
Query: 358 HLSTLPQDVTEEEIVSHL-EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
H+S L + + E + + E G + K+ K L+ ET QA E + H
Sbjct: 265 HISNLKKVSSNAETMWDVFSEFGVVQAVKVLNTQFKFMCLIKMETLRQALEVMALMHNEE 324
Query: 417 LGGSIIRISFSQ 428
+ ++ISF++
Sbjct: 325 IDNRNVQISFTK 336
>gi|380011401|ref|XP_003689795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Apis
florea]
Length = 100
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
++PN +LL TI + +YPITVEVLH + +P G V++IV F+K+ G QA+++Y
Sbjct: 40 NKPNHVLLFTIINPVYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVEY 89
>gi|341888865|gb|EGT44800.1| hypothetical protein CAEBREN_15314 [Caenorhabditis brenneri]
Length = 229
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 53/82 (64%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T SKV+HVRN+ ++ + +L+QL +G ++ +ML+ K+QA ++ ++ SA +
Sbjct: 118 TPVSKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVTGM 177
Query: 62 TNVQPTIRGRNVYVQFSSHQEL 83
T V IRGR ++ Q+S+H+EL
Sbjct: 178 TAVPIQIRGRTLFAQYSTHREL 199
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G P T V V +L+S+ +D KL F +G++ K++R+ + G G
Sbjct: 121 GQQPSKVDTTRHFHVFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYG 177
Query: 293 F-------QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAK 345
F +AE A+ + G L + + N++ Q TH S +N+ +
Sbjct: 178 FVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPTHYNEKSFDEIYNQTSGD 237
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N +++ + +++E+EI +G I ++F+M G A V F+ ++ A
Sbjct: 238 N--------TSVYVGNIA-NLSEDEIRQAFASYGRISEVRIFKMQG--YAFVKFDNKDAA 286
Query: 406 TEALVCKHASSLGGSIIRISFSQ 428
+A+V + +GG ++R S+ +
Sbjct: 287 AKAIVQMNNQEVGGQLVRCSWGK 309
>gi|145552559|ref|XP_001461955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429792|emb|CAK94582.1| unnamed protein product [Paramecium tetraurelia]
Length = 359
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 42/276 (15%)
Query: 95 DEPNRILLVTIHHM--LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
D PN+ILL+ ++ + +P+ +HQ F+ +G + KI+ F++ +A +++ SA+
Sbjct: 7 DPPNQILLLILNSLPSSFPLNNSFIHQKFNEYGDINKILIFERGKTTKAFVEFHELKSAI 66
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVN-YNNERSRDFTNPNLPAEQKGRPSQSGYS 211
AR L G N+ G ++ I FS L L + +N R D+T + ++ S
Sbjct: 67 QARRQLNGCNVQGG--KMIIHFSRLKNLNLEIVDNSRGTDYTQASSNSQNSDSILNSRTD 124
Query: 212 E----------AGVAFPQMANAAAI----------------AAAFGGGLPPGITGTND-- 243
E + P+ AN++ I + +P I+ +
Sbjct: 125 ENIQLDLTNHISQTQSPR-ANSSPIRNEQINRLLESDDEDDLTIWKQAIPLNISEFHSDI 183
Query: 244 ------RCTVLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 296
R + L+ LN D +I ++N+FS +GN+ I L A ++ QA
Sbjct: 184 QKLLQQRQSRLLRILNFDSKITGKMIYNVFSKFGNLEEI-LYEKSFSRAFIKYQSVNQAI 242
Query: 297 LAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYM 332
+A +L F ++ + F ++ + EYM
Sbjct: 243 IAKEYLNNIQFFDSQIRIYFEPLQSLQPTSFQDEYM 278
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L+S+ +D KL F +G++ K++R+ + G GF +AE A+
Sbjct: 24 VFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYGFVSYPKREEAERAI 80
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G L + + N++ Q +H S +N+ + N +++
Sbjct: 81 EQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDN--------TSVYV 132
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
+ +TE+EI G I ++F+M G A V F+ ++ A +A+V + +GG
Sbjct: 133 GNIAS-LTEDEIRQGFASFGRITEVRIFKMQG--YAFVKFDNKDAAAKAIVQMNNQDVGG 189
Query: 420 SIIRISFSQ 428
++R S+ +
Sbjct: 190 QLVRCSWGK 198
>gi|145517979|ref|XP_001444867.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412300|emb|CAK77470.1| unnamed protein product [Paramecium tetraurelia]
Length = 422
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL------KGALLFGKRLEVN 315
++N+FS +GNI ++ + K + L++ + E++V FL LFG++L+V
Sbjct: 241 IYNIFSTFGNIQKMIFFKTKCN-VLIE----YSTEVSVKFLLTNFNEGNPTLFGQKLKVY 295
Query: 316 FSKHPNI----------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD 365
S + I + + E+ N F R N++Y +P++ I L+ L ++
Sbjct: 296 PSNYEFIFFRNCEEGQLPKNTEEEEFYLGNEASF-RYKDNNFKYLVAPSQQIMLTNLKKE 354
Query: 366 VTEEEIV-SHLEEHGSIVNTKLF-EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 423
EE I+ + G I K+F E K + L+ ++ E A +A+ H I+
Sbjct: 355 FCEEGIIYDTFSKFGPIEKIKIFCEEKNKNKCLIKYQDLESAIQAMAIMHNYEYNKRKIQ 414
Query: 424 ISFSQLQS 431
I FS+ +S
Sbjct: 415 IFFSKNKS 422
>gi|145524938|ref|XP_001448291.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415835|emb|CAK80894.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 24/185 (12%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL------KGALLFGKRLEVN 315
++N+FS +GNI ++ + K + L++ + E++V FL LFG++L+V
Sbjct: 248 IYNIFSTFGNIQKMIFFKTKCN-VLIE----YSTEVSVKFLLTNFNEGNPTLFGQKLKVY 302
Query: 316 FSKHPNI----------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD 365
S + I + + E+ N F R N++Y SP++ I L+ L ++
Sbjct: 303 PSNYEFIFFRNCEEGQLPKNTEEEEFYLGNEASF-RYKDNNFKYLVSPSQQIMLTNLKKE 361
Query: 366 VTEEEIVSH-LEEHGSIVNTKLF-EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 423
EE I+ + G I K+F E K + L+ ++ + A +A+ H I+
Sbjct: 362 FCEEGIIYQTFSKFGQIEKIKIFCEEKNKNKCLIRYQELDSAIQAMAIMHNYEYNKRKIQ 421
Query: 424 ISFSQ 428
I FS+
Sbjct: 422 IFFSK 426
>gi|213511916|ref|NP_001134520.1| heterogeneous nuclear ribonucleoprotein L [Salmo salar]
gi|209733988|gb|ACI67863.1| Heterogeneous nuclear ribonucleoprotein L [Salmo salar]
Length = 143
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+H+R + I E DL++ Q FG I+ +VM+ K QAL++ +D+ + NA+ +
Sbjct: 36 TLPSPVVHIRGLVDGIMEADLVEALQEFGTISYVVMMPKKRQALVEYEDLNGSCNAVTYA 95
Query: 62 TNVQPTIRGRNVYVQFSS 79
Q I G + +S+
Sbjct: 96 AENQVYIAGHPSCINYSA 113
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L+S+ +D KL F +G++ K++R+ + G GF +AE A+
Sbjct: 34 VFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYGFVSYPKREEAERAI 90
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G L + + N++ Q +H S +N+ + N +++
Sbjct: 91 EQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDN--------TSVYV 142
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
+ +TE+EI G I ++F+M G A V F+ ++ A +A+V + +GG
Sbjct: 143 GNIAS-LTEDEIRQGFASFGRITEVRIFKMQG--YAFVKFDNKDAAAKAIVQMNNQDVGG 199
Query: 420 SIIRISFSQ 428
++R S+ +
Sbjct: 200 QLVRCSWGK 208
>gi|145483371|ref|XP_001427708.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394791|emb|CAK60310.1| unnamed protein product [Paramecium tetraurelia]
Length = 586
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
L+NLFS+YGNI ++ L+ + AL+Q A +A L + +G+ +++ FS +
Sbjct: 404 LYNLFSIYGNIDKMIYLKERS-SALIQYMTYDYAAIAKESLNDIMFYGQSIKIFFSNYDE 462
Query: 322 I---TQGADTHEYMNS--NLNRFNRNAAKNYR------YCCS-PTKMIHLSTLPQDVTEE 369
I TQ + EY + + + +R Y + P I +S L ++ +
Sbjct: 463 ISLKTQPSKPGEYTQDLKAQEEYFQGGEETHRIKPDSTYTLAPPCDTIQVSNLTKNSCQL 522
Query: 370 EIV-SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
I+ +L+E+G I +K+ K A++ F + E A LV + L G I+I+FS+
Sbjct: 523 NILQQYLQEYGIIKQSKIITNAMKYMAILKFASTEIALTVLVKNNGLELDGKPIQINFSK 582
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 36/194 (18%)
Query: 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP-----DHALVQMGDGFQ 294
GT+D T L+ N + ++ + +F GN+ KL+R++ +A V +
Sbjct: 4 GTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDD 63
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPT 354
A AV + GA L K L+V+F++ + E N+NL
Sbjct: 64 ANKAVREMNGARLQNKTLKVSFAR-------PSSTEIKNANL------------------ 98
Query: 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE---MNGKKQALVLFETEEQATEALVC 411
++S LP+D+ EEE+ + + G I+ +K+ + G+ V F+ +A A+
Sbjct: 99 ---YISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDD 155
Query: 412 KHASSLGGSIIRIS 425
+ +L G+ ++++
Sbjct: 156 LNNKTLPGTNVKLT 169
>gi|154422945|ref|XP_001584484.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121918731|gb|EAY23498.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 314
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 117 LHQVF---SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173
+H ++ S G V+KI+ F+K + AL+Q + A + ++L N Y +L +Q
Sbjct: 120 IHDIYDECSHFGVVQKIICFEKKGKY-ALLQMENVDQAALVLANLSIPNRYAPSFELRVQ 178
Query: 174 FSNLDELQVNYNNERSRDFTNPNLPAE----QKGRPSQSGYSEAGVAFPQMANAAAIAAA 229
+S + + YNN +S DFT P E ++G ++ Y E P+ N I +
Sbjct: 179 YSKNTNIVIQYNNSKSFDFTVPGALDEFELLREGLTNEVPYFE-----PESCN--EIPRS 231
Query: 230 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL--V 287
F P ++ V+ L +++ + N+F YG ++++K++ K + L V
Sbjct: 232 FDFVRPVQFDPAYGN-SLTVTGLPANQATFAR--NIFQQYGAVLKVKVM-TKQNEVLTYV 287
Query: 288 QMGDGFQAELAVHFLKGALLFGKRLEV 314
QM + F A LA+ + G + GK++ V
Sbjct: 288 QMRNAFYARLAMTNINGMVFNGKKVTV 314
>gi|194911931|ref|XP_001982402.1| GG12756 [Drosophila erecta]
gi|190648078|gb|EDV45371.1| GG12756 [Drosophila erecta]
Length = 466
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 44/199 (22%)
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
G G G G+++ T L+ N + ED++ +LFS G I +KL+R+K +G
Sbjct: 130 GSGSQNGSNGSSETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQ--SLG 187
Query: 291 DGF-------QAELAVHFLKGALLFGKRLEVNFSK-HPNITQGADTHEYMNSNLNRFNRN 342
GF AE AV+ L G L K ++V+F++ + +GA+
Sbjct: 188 YGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN--------------- 232
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-----KKQALV 397
+++S LP+ +T++E+ + G+I+ +++ + G K +
Sbjct: 233 --------------LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFI 278
Query: 398 LFETEEQATEALVCKHASS 416
F+ E+AT A++ + ++
Sbjct: 279 RFDKREEATRAIIALNGTT 297
>gi|145516865|ref|XP_001444321.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411732|emb|CAK76924.1| unnamed protein product [Paramecium tetraurelia]
Length = 362
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 95 DEPNRILLVTIHHM--LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
D P++ILL+ + + +P++ E+L + FS +G ++KI+ F++ +A ++Y A+
Sbjct: 7 DPPSKILLLVMTQLSPTFPLSNELLFEQFSKYGDIKKILIFERGKANKAFVEYYDVKHAI 66
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVN-YNNERSRDFT 193
AR G+ + +G +L I FS L L + + R D+T
Sbjct: 67 EARKDKLGKYLAEGEGKLTIHFSRLKNLDLEVVDKSRGTDYT 108
>gi|145476257|ref|XP_001424151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391214|emb|CAK56753.1| unnamed protein product [Paramecium tetraurelia]
Length = 421
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 24/185 (12%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL------KGALLFGKRLEVN 315
++N+FS +GNI ++ + K + L++ + E++V FL LFG++L+V
Sbjct: 240 IYNIFSTFGNIQKMIYFKTKCN-VLIE----YSTEVSVKFLLTNFNEGNPTLFGQKLKVY 294
Query: 316 FSKHPNI----------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD 365
S + I + + E+ N F R N++Y SP++ I L+ L ++
Sbjct: 295 PSNYEFIFFRNCEEGQLPKNTEEEEFYLGNEASF-RYKDNNFKYLVSPSQQIMLTNLKKE 353
Query: 366 VTEEEIV-SHLEEHGSIVNTKLF-EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 423
EE I+ + G I K+F E K + L+ ++ + A +A+ H I+
Sbjct: 354 FCEEGIIYDTFSKFGQIEKIKIFCEEKNKNKCLIRYQELDSAMQAMAIMHNYEYNKRKIQ 413
Query: 424 ISFSQ 428
I FS+
Sbjct: 414 IFFSK 418
>gi|213515090|ref|NP_001135023.1| cytotoxic granule-associated RNA binding protein 1 [Salmo salar]
gi|209738084|gb|ACI69911.1| Nucleolysin TIA-1 [Salmo salar]
Length = 409
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 238 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
I+GT ++ V +L D++ L F +G ++ +++R+ P+ L + G GF
Sbjct: 110 ISGTTH--SIYVGDL-PHECDDNMLAQAFRPFGEVLSSRVVRD-PESGLSK-GFGFIVYR 164
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
+AE A+ + G + K ++V+++ T +++ + N N Y+
Sbjct: 165 HQYEAEEAIQKMHGGTISSKSVKVSWA----------TRSKATTSVPQLNYNDV--YQQS 212
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
+ +++ LP+ + E+ ++S E +G++++TK+F + K A + +T E A ++V
Sbjct: 213 GAHNTTLYVGNLPESMKEQFLISFFEPYGAVLDTKIF--HDKHFAFIKMDTHEAAATSIV 270
Query: 411 CKHASSLGGSIIRISFSQ 428
+ + G ++++ +S+
Sbjct: 271 KCNGQPVDGCVMKVWWSR 288
>gi|241631201|ref|XP_002410244.1| heterogeneous nuclear ribonucleoprotein L, putative [Ixodes
scapularis]
gi|215503358|gb|EEC12852.1| heterogeneous nuclear ribonucleoprotein L, putative [Ixodes
scapularis]
Length = 97
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 78 SSHQELTTMEQNAQGRGDE---PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ 134
++ Q+ N +GRG E PN +LL+TI + YPITV+V+H + +P G V +IV F+
Sbjct: 11 NNQQQGYNYYNNQRGRGQEEEKPNHVLLMTILNPAYPITVDVIHTISTPSGKVMRIVIFK 70
Query: 135 KSAGFQALI 143
K+ G QA++
Sbjct: 71 KN-GVQAMV 78
>gi|297828391|ref|XP_002882078.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
gi|297327917|gb|EFH58337.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
Length = 250
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 32/195 (16%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V V N + D D L LFS YG + R+ + K +A V D AE A+
Sbjct: 4 VFVGNFDYDTRQSD-LERLFSKYGRVERVDM---KSGYAFVYFEDERDAEDAIRGTDNTT 59
Query: 307 LFG---KRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL- 362
FG ++L V ++K +G + AA N R PTK + +
Sbjct: 60 -FGYERRKLSVEWAKGFKGERGKPR-----------DGKAASNQR----PTKTLFVINFD 103
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 422
P E ++ H E +G ++N ++ + A V F T+E AT+AL C H S + ++
Sbjct: 104 PIRTRERDMERHFEPYGKVLNVRI----RRNFAFVQFATQEDATKALDCTHNSKILDRVV 159
Query: 423 RISFSQLQSIRENSQ 437
+ + ++RE+ +
Sbjct: 160 SVEY----ALREDGE 170
>gi|298707512|emb|CBJ30114.1| human PTB (hnRNP) homolog family member (ptb-1) [Ectocarpus
siliculosus]
Length = 921
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQ 144
++P +LLV + +++P+T+ L Q+FS G V+KIV F K +G QAL+Q
Sbjct: 83 EQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQ 132
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 33/212 (15%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V+V ++++ + +LF LYG+++++KL+ ++ ALVQM QA A L
Sbjct: 702 VMVRHVDTLEVSPGAFCHLFGLYGDVMKVKLVASR-GMALVQMRYPVQAANAQRLLDQTP 760
Query: 307 LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAA---KNYRYCCSPT-KMIHLSTL 362
L G +EV S I T L+RF+ K YR SP + + +
Sbjct: 761 LSGMTIEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNV 820
Query: 363 PQDVTEEEIVSHLEEHGSIVN--------------TKLFEMNGKK--------QALVLFE 400
DVT E I S +HG++ + + L G QALV E
Sbjct: 821 SPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTASALASTGGSNAEPTKPSVQALVHME 880
Query: 401 TE------EQATEALVCKHASSLGGSIIRISF 426
+ E A AL+ H +L +R+SF
Sbjct: 881 ADGKVRATEAAVHALIMTHNLTLAERRLRVSF 912
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L+S+ +D KL F +G++ K++R+ + G GF +AE A+
Sbjct: 177 VFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYGFVSYPKREEAERAI 233
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G L + + N++ Q +H S +N+ + N +++
Sbjct: 234 EQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDN--------TSVYV 285
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
+ +TE+EI G I ++F+M G A V F+ ++ A +A+V + +GG
Sbjct: 286 GNIAS-LTEDEIRQGFASFGRITEVRIFKMQG--YAFVKFDNKDAAAKAIVQMNNQDVGG 342
Query: 420 SIIRISFSQ 428
++R S+ +
Sbjct: 343 QLVRCSWGK 351
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L+S+ +D KL F +G++ K++R+ + G GF +AE A+
Sbjct: 105 VFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYGFVSYPKREEAERAI 161
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G L + + N++ Q +H S +N+ + N +++
Sbjct: 162 EQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDN--------TSVYV 213
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
+ +TE+EI G I ++F+M G A V F+ ++ A +A+V + +GG
Sbjct: 214 GNIAS-LTEDEIRQGFASFGRITEVRIFKMQG--YAFVKFDNKDAAAKAIVQMNNQDVGG 270
Query: 420 SIIRISFSQ 428
++R S+ +
Sbjct: 271 QLVRCSWGK 279
>gi|195347400|ref|XP_002040241.1| GM19036 [Drosophila sechellia]
gi|195564435|ref|XP_002105824.1| GD16475 [Drosophila simulans]
gi|194121669|gb|EDW43712.1| GM19036 [Drosophila sechellia]
gi|194203185|gb|EDX16761.1| GD16475 [Drosophila simulans]
Length = 466
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 44/199 (22%)
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMG 290
G G G G+ + T L+ N + ED++ +LFS G I +KL+R+K +G
Sbjct: 130 GSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQ--SLG 187
Query: 291 DGF-------QAELAVHFLKGALLFGKRLEVNFSK-HPNITQGADTHEYMNSNLNRFNRN 342
GF AE AV+ L G L K ++V+F++ + +GA+
Sbjct: 188 YGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN--------------- 232
Query: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-----KKQALV 397
+++S LP+ +T++E+ + G+I+ +++ + G K +
Sbjct: 233 --------------LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFI 278
Query: 398 LFETEEQATEALVCKHASS 416
F+ E+AT A++ + ++
Sbjct: 279 RFDKREEATRAIIALNGTT 297
>gi|115456922|ref|NP_001052061.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|38344865|emb|CAE01291.2| OSJNBa0020P07.8 [Oryza sativa Japonica Group]
gi|113563632|dbj|BAF13975.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|116317923|emb|CAH65946.1| H0716A07.4 [Oryza sativa Indica Group]
gi|218194243|gb|EEC76670.1| hypothetical protein OsI_14641 [Oryza sativa Indica Group]
gi|222628274|gb|EEE60406.1| hypothetical protein OsJ_13581 [Oryza sativa Japonica Group]
Length = 245
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V V NL+ D +L LF YG I RI + K A V D + A+ L G
Sbjct: 4 VFVGNLDYD-TRHSELDRLFYRYGRIDRIDM---KSGFAFVYFEDERDGDEAIRALDG-Y 58
Query: 307 LFG---KRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL- 362
FG +RL V +S+ +G+ Y +N PTK + +
Sbjct: 59 PFGPGRRRLSVEWSRG---DRGSRRDGYSKPPVN-------------TKPTKTLFVINFD 102
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 422
P + +I H E G + N ++ + A V FET+E+AT+AL H++ L +I
Sbjct: 103 PINTRVTDIERHFEPFGKLSNVRI----RRNFAFVQFETQEEATKALEATHSTKLLDRVI 158
Query: 423 RISFS 427
+ ++
Sbjct: 159 SVEYA 163
>gi|218188898|gb|EEC71325.1| hypothetical protein OsI_03370 [Oryza sativa Indica Group]
Length = 504
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 115 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173
EVLHQV++ +G V V G +A + ++ A ARS GRNIYDGC LDIQ
Sbjct: 12 EVLHQVYNTYGAVAVQVLTTSPLGVEAFVWFRSSCDAERARSVTNGRNIYDGCYLLDIQ 70
>gi|327532756|ref|NP_001192193.1| matrin-3 [Monodelphis domestica]
Length = 851
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 116/240 (48%), Gaps = 38/240 (15%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 394 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMSTTEDAQA 448
Query: 57 ALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD-------EPNRIL-LVTIHHM 108
A+ +YT + G+ V V S Q+ +++ G+ D E R++ L + H
Sbjct: 449 AVDYYTTTPALVFGKPVRVHLS--QKYKRIKKPEGGKPDQKFEQKPELGRVIHLSNLPHS 506
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV-----ARSSL--QGR 161
Y + + ++ P+G ++ + + + QA I+ + R A+ A+ +L QGR
Sbjct: 507 GYSDSAVI--KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVEHCAKKALWFQGR 562
Query: 162 ----NIYDGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV 215
++ + +L ++ N +D L+ + + +RS + P+++K + S S++G
Sbjct: 563 YVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKDSPSDKKSKTDGSQKSDSGA 622
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L+S+ +D KL F +G++ K++R+ + G GF +AE A+
Sbjct: 137 VFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYGFVSYPKREEAERAI 193
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G L + + N++ Q +H S +N+ + N +++
Sbjct: 194 EQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDN--------TSVYV 245
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
+ +TE+EI G I ++F+M G A V F+ ++ A +A+V + +GG
Sbjct: 246 GNIAS-LTEDEIRQGFASFGRITEVRIFKMQG--YAFVKFDNKDAAAKAIVQMNNQDVGG 302
Query: 420 SIIRISFSQ 428
++R S+ +
Sbjct: 303 QLVRCSWGK 311
>gi|395504625|ref|XP_003756648.1| PREDICTED: matrin-3 [Sarcophilus harrisii]
Length = 851
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 38/240 (15%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 394 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMSTTEDAQA 448
Query: 57 ALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD-------EPNRIL-LVTIHHM 108
A+ +YT + G+ V V S Q+ +++ G+ D E R++ L + H
Sbjct: 449 AVDYYTTTPALVFGKPVRVHLS--QKYKRIKKPEGGKPDQKFEQKPELGRVIHLSNLPHS 506
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV-----ARSSL--QGR 161
Y + + ++ P+G ++ + + + QA I+ + R A+ A+ +L QGR
Sbjct: 507 GYSDSAVI--KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVEHCAKKALWFQGR 562
Query: 162 NIYDGCCQ------LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV 215
+ + L I +D L+ + + +RS + P+++K + S S++G
Sbjct: 563 YVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKDSPSDKKSKTDGSQKSDSGA 622
>gi|224133226|ref|XP_002327991.1| predicted protein [Populus trichocarpa]
gi|222837400|gb|EEE75779.1| predicted protein [Populus trichocarpa]
Length = 934
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 128/316 (40%), Gaps = 58/316 (18%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALL---QMQDVPSAINALQFYTNV 64
+ V N+ E++++DL++LF FG + + A++ A + ++D A +ALQ
Sbjct: 32 LWVGNISREVADSDLMELFAQFGALDSVTTYSARSYAFVYFKHVEDAKQAKDALQGS--- 88
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPH 124
++RG + ++F+ R +P++ L V + ++ E L + F
Sbjct: 89 --SLRGNQIKIEFA--------------RPAKPSKYLWVG--GISSSVSEERLEEEFLKF 130
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY 184
G +E + A ++Y A A ++ G+ I G Q+ + F
Sbjct: 131 GKIEDFKFLRDRK--IAYVEYLKLEDAFEAMKNMNGKKI--GGDQIRVDFL--------- 177
Query: 185 NNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG---GLPPGITGT 241
RS+ LP R Q + GV PQ+ + GG G P I
Sbjct: 178 ---RSQSTRREQLPDFLDSREDQFSATHYGVRRPQLPQ------SLGGRKDGQPSNI--- 225
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+ V S RIDE L N L+G I RIK ++ ++ V+ +A A
Sbjct: 226 -----LWVGYPPSVRIDEQMLHNAMILFGEIERIKSFPSR-HYSFVEFRSVDEARRAKEG 279
Query: 302 LKGALLFGKRLEVNFS 317
L+G L R+ + FS
Sbjct: 280 LQGRLFNDPRITIMFS 295
>gi|145529570|ref|XP_001450568.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418190|emb|CAK83171.1| unnamed protein product [Paramecium tetraurelia]
Length = 600
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
L+NLFS+YGNI ++ L+ + AL+Q A +A L + +G+ +++ FS +
Sbjct: 418 LYNLFSIYGNIDKMIYLKERS-SALIQYVTQDHAAIAKESLNDIMFYGQSIKIFFSNYEE 476
Query: 322 I------------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
I TQ T E +R + P I +S L ++ +
Sbjct: 477 ISLKTQPTKPGEFTQDVKTQEEYFQGGEETHRIKPDSTYTLAPPCDTIQVSNLTKNSCQV 536
Query: 370 EIV-SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
++ +L+++G I KL K A++ + + E A L + L G I+I+FS+
Sbjct: 537 AVLQQYLQDYGQIKQYKLVTNATKYMAILKYPSTEVAITVLANNNGLELDGKQIQINFSK 596
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 42/256 (16%)
Query: 81 QELTTMEQNAQGRGDEPNRILLVTIH--HMLYP-------ITVEVLHQVFSPHGFVEKIV 131
Q+L M+Q+A + N L ++ ++Y +T ++L+ +FS +G ++K++
Sbjct: 373 QQLDKMQQSADKIEEYINPKFLQSVRKSRVIYARWFDKKVVTSQMLYNLFSIYGNIDKMI 432
Query: 132 TFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRD 191
++ + ALIQY + A +A+ SL Y + I FSN +E+ +
Sbjct: 433 YLKERSS--ALIQYVTQDHAAIAKESLNDIMFYGQS--IKIFFSNYEEISLK-------- 480
Query: 192 FTNPNLPAE-QKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRC-TVLV 249
T P P E + +Q Y + G ++ + A PP C T+ V
Sbjct: 481 -TQPTKPGEFTQDVKTQEEYFQGGEETHRIKPDSTYTLA-----PP--------CDTIQV 526
Query: 250 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL---KGAL 306
SNL + L YG I + KL+ N + + E+A+ L G
Sbjct: 527 SNLTKNSCQVAVLQQYLQDYGQIKQYKLVTNATKYMAILKYPS--TEVAITVLANNNGLE 584
Query: 307 LFGKRLEVNFSKHPNI 322
L GK++++NFSK I
Sbjct: 585 LDGKQIQINFSKQKLI 600
>gi|301758080|ref|XP_002914884.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Ailuropoda melanoleuca]
Length = 175
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH 329
++ P ALV+MGD + E AV L LFGKRL V SK ++ G ++
Sbjct: 1 MKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSY 60
Query: 330 -EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388
++ S NRF + P+ ++H +P VTEE +H + K
Sbjct: 61 KDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKV 120
Query: 389 MNGKKQA-----LVLFETEEQATEAL 409
+ K A L+ +E + A EAL
Sbjct: 121 FDAKPSAKTLSGLLEWECKTDAVEAL 146
>gi|324511303|gb|ADY44711.1| RNA-binding protein Raly [Ascaris suum]
Length = 307
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 31/136 (22%)
Query: 203 GRPSQSGYSEAGVAFPQMANAAAIAAAFGGGL-PPGITGTND------------------ 243
GRP +SGY FP ++AA + GG+ P G+ G N
Sbjct: 43 GRPLRSGY-----GFP--GDSAAGSYPLVGGMHPGGVFGGNPQPLKQREISFDTSSKEPH 95
Query: 244 --RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
R V V N+N++ I + + LFS YG ++ + L + +A +Q G+ +A+LAV
Sbjct: 96 LIRARVFVGNMNTNAITREDIIRLFSAYGTLLGVTLFKG---YAFIQYGNASEADLAVSV 152
Query: 302 LKGALLFGKRLEVNFS 317
L G G L+V +
Sbjct: 153 LNGYNWNGSILDVKLA 168
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G P T V V +L+S+ +D KL F +G++ K++R+ + G G
Sbjct: 119 GQQPSKIDTTRHFHVFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYG 175
Query: 293 F-------QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAK 345
F +AE A+ + G L + + N++ Q H S +N+ +
Sbjct: 176 FVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPVHYNEKSYDEIYNQTSGD 235
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N +++ + +++EE+I +G I ++F+M G A V F+ ++ A
Sbjct: 236 N--------TSVYVGNIA-NLSEEDIRQAFASYGRISEVRIFKMQG--YAFVKFDNKDAA 284
Query: 406 TEALVCKHASSLGGSIIRISFSQ 428
+A+V + +GG ++R S+ +
Sbjct: 285 AKAIVQMNNQEVGGQLVRCSWGK 307
>gi|159163282|pdb|1WEX|A Chain A, Solution Structure Of Rrm Domain In Protein Bab28521
Length = 104
Score = 52.4 bits (124), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 74
Query: 65 QPTIRGRNVYVQFSSHQELT 84
I G+ + +S+ + +T
Sbjct: 75 PVYIAGQQAFFNYSTSKRIT 94
>gi|116780574|gb|ABK21727.1| unknown [Picea sitchensis]
gi|116793253|gb|ABK26673.1| unknown [Picea sitchensis]
Length = 271
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 264 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHP 320
LF YG + R+ + K +A + M D AE A+ L FG+ RL V ++KHP
Sbjct: 20 RLFGRYGRVERVDM---KSGYAFIYMDDERDAEDAIRGLDN-REFGRQRRRLCVEWTKHP 75
Query: 321 NITQGADTHEYMNSNLNRFNR-NAAKNYRYCCSPTKMIHLSTL-PQDVTEEEIVSHLEEH 378
F R + P K + + P D +++ H E +
Sbjct: 76 EKG---------------FRRPEGGRRSTMYIKPAKTLFVINFDPADTGVKDLEKHFEPY 120
Query: 379 GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
G ++N ++ + A V FE++E+AT+AL S + SII + ++Q
Sbjct: 121 GKVLNVRI----RRNFAFVQFESQEEATKALHSTDKSKVLDSIISVEYAQ 166
>gi|449432024|ref|XP_004133800.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
gi|449477961|ref|XP_004155176.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
Length = 253
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
+ V N D + +L LFS YG + RI + K A V D AE A+ L L
Sbjct: 4 IFVGNFGYD-TRQSELERLFSKYGRVERIDM---KSGFAFVYFEDERDAEDAIRGLDN-L 58
Query: 307 LFG---KRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL- 362
FG +RL V +++ +R + N R PTK + +
Sbjct: 59 PFGYDRRRLSVEWARG-------------ERGRHRDGSKSMANQR----PTKTLFVINFD 101
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 422
P +I H E +G ++N ++ + A V FET+E AT+AL C H S + ++
Sbjct: 102 PIRTRVRDIERHFEPYGKVLNVRI----RRNFAFVQFETQEDATKALECTHMSKILDRVV 157
Query: 423 RISFS 427
+ ++
Sbjct: 158 SVEYA 162
>gi|345497985|ref|XP_001603213.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Nasonia vitripennis]
Length = 386
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V +L S I+ L F+ +G I +++R+ + G GF +AE A+
Sbjct: 62 IFVGDL-SPEIETQTLREAFAPFGEISDCRVVRDP--QTMKSKGYGFVSFVKKAEAESAI 118
Query: 300 HFLKGALLFGKRLEVNFS--KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
+ G L + + N++ K P A+T + +N+++ N C+ +
Sbjct: 119 GAMNGQWLGSRSIRTNWATRKPPAPKSEANTKPLTFDEV--YNQSSPTN----CT----V 168
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
+ L +TEE + GSI ++F+ G A + F T+E AT A+V H + +
Sbjct: 169 YCGGLTNGLTEELMQKTFSPFGSIQEIRVFKDKGY--AFIRFSTKESATHAIVAVHNTDI 226
Query: 418 GGSIIRISFSQLQSIRENSQ 437
G ++ S+ + N+Q
Sbjct: 227 NGQTVKCSWGKESGDPNNAQ 246
>gi|242063870|ref|XP_002453224.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|241933055|gb|EES06200.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|448878270|gb|AGE46098.1| arginine/serine-rich splicing factor RS34 [Sorghum bicolor]
Length = 295
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 38/190 (20%)
Query: 247 VLVSNLNSD-RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 305
V NL+ D RI E + LF YG + R+ L K A V M D AE A+H L G
Sbjct: 4 VFCGNLDYDVRISE--VERLFGKYGRVERVDL---KTGFAFVYMEDERDAEDAIHRLDGI 58
Query: 306 LLF--GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL- 362
G+R+ V ++K +R A + SPT+ TL
Sbjct: 59 DFGRKGRRIRVEWTKE--------------------DRTAGRRGSSRRSPTQARPTKTLF 98
Query: 363 -----PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
P + ++ H +++G + N ++ K A V FE +E AT AL + S
Sbjct: 99 VINFDPINTRIRDLERHFDKYGRVANVRIK----KNFAFVQFEVQEDATRALEGTNGSHF 154
Query: 418 GGSIIRISFS 427
+I + ++
Sbjct: 155 MDRVISVEYA 164
>gi|326678801|ref|XP_683222.4| PREDICTED: probable RNA-binding protein 20-like [Danio rerio]
Length = 781
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 4 PSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
P +V+H+ N+ +END++ L PFG +T +++R+ +QA L+M V +A +Q+Y
Sbjct: 201 PGRVVHICNLPEGSCTENDVINLGLPFGKVTNYILMRSTHQAFLEMAYVEAAQAMVQYY- 259
Query: 63 NVQP-TIRGRNVYVQFS 78
+QP TI G+ + ++ S
Sbjct: 260 QLQPATINGQKLLIRMS 276
>gi|357165299|ref|XP_003580336.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 261
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 30/195 (15%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V V NL+ D +L LF YG I RI + K A V D + A+ L G +
Sbjct: 4 VFVGNLDYD-TRHSELDRLFYRYGRIERIDM---KSGFAFVYFEDERDGDDAIRALDG-V 58
Query: 307 LFG---KRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL- 362
FG ++L V +S+ T+ D Y +N PTK + +
Sbjct: 59 PFGPGRRKLSVEWSRGDRGTRRDDRDGYSKPPVN-------------TKPTKTLFVINFD 105
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 422
P + +I H + G I N ++ K A V FET+E+AT+AL H++ L +I
Sbjct: 106 PINTRVSDIERHFDPFGKISNVRI----RKNFAFVQFETQEEATKALDATHSTKLLDRVI 161
Query: 423 RISFSQLQSIRENSQ 437
+ + + R++S+
Sbjct: 162 SVEY----AFRDDSE 172
>gi|383854458|ref|XP_003702738.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Megachile
rotundata]
Length = 196
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+VIH+RN+ +E+SE +++ L PFG +T +++L+ KNQ + +Q T
Sbjct: 57 KPSRVIHIRNIPNEVSEGEIIHLGVPFGRVTNVLVLKGKNQLETNAACNNCSTRQMQLAT 116
Query: 63 NV 64
NV
Sbjct: 117 NV 118
>gi|116786163|gb|ABK24003.1| unknown [Picea sitchensis]
Length = 289
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 257 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLE 313
+ + ++ LF YG + R+ + K +A V M D AE A+ L FG+ RL
Sbjct: 13 VRQSEIERLFGKYGRVERVDM---KSGYAFVYMEDERDAEDAIRALD-KTEFGRQRRRLT 68
Query: 314 VNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL-PQDVTEEEIV 372
V ++KH +G E ++ PTK + + P D ++
Sbjct: 69 VEWTKH--AERGLRRSEDGRRSVT------------GLKPTKTLFVINFDPYDTRARDLE 114
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430
H E +G ++N ++ + A + + T+E+AT+A H S+L +I + ++Q +
Sbjct: 115 RHFEPYGKVLNVRIR----RNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQRE 168
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V V +L ++ ID + L F+ YG I K++R+ + G GF AE A+
Sbjct: 136 VFVGDLATE-IDNNALKAAFAAYGEISEAKVIRDP--QTMKSKGYGFVSFPSKESAEKAI 192
Query: 300 HFLKGALLFGKRLEVNF-SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
+ G L+ +++ N+ S+ P + A T E + FN A N ++
Sbjct: 193 AGMNGQLIGRRQIRTNWASRKPASAEEAHTKEQTFDEV--FNATRADNTS--------VY 242
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418
+ + TEE++ G+I ++F+ G A V + T+E AT A++ + +
Sbjct: 243 VGNVHSSTTEEDLREAFASIGAISEVRIFKQQGY--AFVRYATKEAATRAIMQMNGKEIN 300
Query: 419 GSIIRISF 426
G I+ S+
Sbjct: 301 GQNIKCSW 308
>gi|413926031|gb|AFW65963.1| hypothetical protein ZEAMMB73_014541 [Zea mays]
Length = 153
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLD 171
+T V+ +F+ +G VE + F + ++ + A A L GRNIYDGCCQLD
Sbjct: 1 MTESVIRAIFAQYGKVEHVHVFGGLDPVLTHVVFETKQEAANAFGELHGRNIYDGCCQLD 60
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNL 197
IQ+ + S+D TN NL
Sbjct: 61 IQWCS------------SQDPTNTNL 74
>gi|145503200|ref|XP_001437577.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404728|emb|CAK70180.1| unnamed protein product [Paramecium tetraurelia]
Length = 601
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321
L+NLFS+YGNI ++ L+ + AL+Q A +A L + +G+ +++ FS +
Sbjct: 419 LYNLFSIYGNIDKMIYLKERS-SALIQYVTQDHAAIAKESLNDIMFYGQSIKIFFSNYEE 477
Query: 322 I------------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369
I TQ T E +R + P I +S L ++ +
Sbjct: 478 ISLKTQPTKPGEFTQDVKTQEEYFQGGEETHRIKPDSTYTLAPPCDTIQVSNLTKNSCQI 537
Query: 370 EIV-SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428
++ +L+++G+I +KL K A++ + + E A L + L G I+I+FS+
Sbjct: 538 PVLQQYLQDYGNIRLSKLVTNATKYMAILKYPSTEVAITVLANNNGLDLDGKQIQINFSK 597
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 42/256 (16%)
Query: 81 QELTTMEQNAQGRGDEPNRILLVTIH--HMLYP-------ITVEVLHQVFSPHGFVEKIV 131
Q+L M+Q+A + N L T+ ++Y +T ++L+ +FS +G ++K++
Sbjct: 374 QQLDKMQQSADKIEEYINPKFLQTVRKSRVIYARWFDKKVVTSQMLYNLFSIYGNIDKMI 433
Query: 132 TFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRD 191
++ + ALIQY + A +A+ SL Y + I FSN +E+ +
Sbjct: 434 YLKERSS--ALIQYVTQDHAAIAKESLNDIMFYGQS--IKIFFSNYEEISLK-------- 481
Query: 192 FTNPNLPAE-QKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRC-TVLV 249
T P P E + +Q Y + G ++ + A PP C T+ V
Sbjct: 482 -TQPTKPGEFTQDVKTQEEYFQGGEETHRIKPDSTYTLA-----PP--------CDTIQV 527
Query: 250 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL---KGAL 306
SNL + L YGNI KL+ N + + E+A+ L G
Sbjct: 528 SNLTKNSCQIPVLQQYLQDYGNIRLSKLVTNATKYMAILKYPS--TEVAITVLANNNGLD 585
Query: 307 LFGKRLEVNFSKHPNI 322
L GK++++NFSK I
Sbjct: 586 LDGKQIQINFSKQKLI 601
>gi|413948915|gb|AFW81564.1| hypothetical protein ZEAMMB73_726988 [Zea mays]
Length = 512
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176
+VF+P+G VE + A + ++ + A A L GRNIYDGCCQLDIQ+ +
Sbjct: 201 EVFAPYGRVELVHIIGGLDPVLAHVVFETKHEAADAFGELHGRNIYDGCCQLDIQWCS 258
>gi|156843736|ref|XP_001644934.1| hypothetical protein Kpol_530p46 [Vanderwaltozyma polyspora DSM
70294]
gi|156115587|gb|EDO17076.1| hypothetical protein Kpol_530p46 [Vanderwaltozyma polyspora DSM
70294]
Length = 587
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 233 GLPPGITGTNDR----CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 288
G PP ++ +N + TV + L S +I+E ++ +LF +GNI+ +KL K + V+
Sbjct: 364 GQPPQLSKSNSQNELVSTVFIGGL-SPKINESQVRSLFKPFGNIVNVKLPPGK-NCGFVK 421
Query: 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG-ADTHEYMNSNLNRFNRNAAKNY 347
+ AE A+ L+G ++ G + +++ K ++T G A + +N N+++ N NY
Sbjct: 422 FENRIDAEAAIQGLQGFIVAGNPIRLSWGKASSMTSGNASNNHNVNGNIDQLNNQNNVNY 481
Query: 348 RYCCSP 353
P
Sbjct: 482 HVKSKP 487
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF----- 293
TGT + V + N DR+D++ L LF +G I+ +K++ D G GF
Sbjct: 160 TGTKEFTNVYIKNFG-DRMDDETLNGLFGRFGQILSVKVMT---DEGGKSKGFGFVSFER 215
Query: 294 --QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
A+ AV + G L GK + V ++ + D H + + ++ + Y+
Sbjct: 216 HEDAQKAVDEMNGKELNGKHIYVGRAQKKD-----DRHTELKHKFEQVTQDKSIRYQGI- 269
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEAL 409
+++ L + +E + G+I +TK+ G+ + V F + E+AT+A+
Sbjct: 270 ----NLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAV 325
Query: 410 VCKHASSLGGSII 422
S + G I+
Sbjct: 326 -----SEMNGRIV 333
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 21/203 (10%)
Query: 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDG 292
G P T V V +L+S+ +D KL F +G++ K++R+ + G G
Sbjct: 119 GQQPSKIDTTRHFHVFVGDLSSE-VDNQKLREAFIPFGDVSDAKVIRDT--NTTKSKGYG 175
Query: 293 F-------QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAK 345
F +AE A+ + G L + + N++ + D + N N ++ +
Sbjct: 176 FVSYPKREEAERAIEQMNGQWLGRRTIRTNWA----TRKPGDQEKPSNYNEKSYD----E 227
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
Y +++ + ++TE+EI +G I ++F+M G A V FE + A
Sbjct: 228 VYNQTSGDNTSVYVGNIA-NLTEDEIRQAFASYGRISEVRIFKMQG--YAFVKFENKNAA 284
Query: 406 TEALVCKHASSLGGSIIRISFSQ 428
+A+ + +GG ++R S+ +
Sbjct: 285 AKAITEMNNQDVGGQMVRCSWGK 307
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL----RNKPDHALVQMGDGFQAELA 298
D + V +L +D DED L LFS YGN+I K++ N + V+ + +++ A
Sbjct: 92 DSTNIFVKHLPNDFTDED-LAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQAA 150
Query: 299 VHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358
+ L G K+L S + +NLN N P+ +
Sbjct: 151 IKELDGFQFQNKKLLCRLSN-------------LYTNLNSKN------------PSNNLF 185
Query: 359 LSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMNGKKQ--ALVLFETEEQATEAL 409
+ LP DVT+E++ E +G IV K + + NG+ + V F + +A A+
Sbjct: 186 IKPLPADVTDEQLRKLFEPYGKIVECKVMLDQNGQSKFAGFVRFFNDSEAASAI 239
>gi|118785284|ref|XP_314526.3| AGAP010553-PA [Anopheles gambiae str. PEST]
gi|116128011|gb|EAA09944.4| AGAP010553-PA [Anopheles gambiae str. PEST]
Length = 643
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ---------A 295
C V V ++ S + ED + F +G I I + + + Q GF A
Sbjct: 160 CRVYVGSI-SFELKEDTIRAAFLPFGPIKSINMSWD----PITQKHKGFAFVEYEIPEGA 214
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+LA+ + GA+L G+ ++V + N+ Q + + +NR
Sbjct: 215 QLALEQMNGAMLGGRNIKVG--RPSNMPQAQQVIDEIQEEAKSYNR-------------- 258
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVC 411
I+++++ D+TEE+I S E G I+ K+ + N K + ++T + A EA+
Sbjct: 259 -IYIASIHPDLTEEDIKSVFEAFGPIMTCKMSQGNAVHTHKGYGFIEYQTNQSAIEAIAS 317
Query: 412 KHASSLGGSIIRISFS 427
+ LGG ++R+ S
Sbjct: 318 MNLFDLGGQLLRVGRS 333
>gi|157105905|ref|XP_001649078.1| fuse-binding protein-interacting repressor siahbp1 [Aedes aegypti]
gi|108879987|gb|EAT44212.1| AAEL004415-PA [Aedes aegypti]
Length = 672
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ---------A 295
C V V ++ S + ED + F +G I I + + + Q GF A
Sbjct: 186 CRVYVGSI-SFELKEDTIRAAFLPFGPIKSINMSWD----PITQKHKGFAFVEYEIPEGA 240
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+LA+ + GA+L G+ ++V + N+ Q + + +NR
Sbjct: 241 QLALEQMNGAMLGGRNIKVG--RPSNMPQAQQVIDEIQEEAKNYNR-------------- 284
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVC 411
I+++++ D+TEE+I S E G IV K+ + + K A + ++T + A EA+
Sbjct: 285 -IYIASIHPDLTEEDIKSVFEAFGPIVTCKMSQGSAAHTHKGYAFIEYQTNQSAIEAIAS 343
Query: 412 KHASSLGGSIIRISFS 427
+ LGG ++R+ S
Sbjct: 344 MNLFDLGGQLLRVGRS 359
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF----- 293
TGT + V + N DR+D++ L LF +G I+ +K++ D G GF
Sbjct: 185 TGTKEFTNVYIKNFG-DRMDDETLNGLFGRFGQILSVKVMT---DEGGKSKGFGFVSFER 240
Query: 294 --QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
A+ AV + G L GK + V ++ + D H + + ++ + Y+
Sbjct: 241 HEDAQKAVDEMNGKELNGKHIYVGRAQKKD-----DRHTELKHKFEQVTQDKSIRYQGI- 294
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEAL 409
+++ L + +E + G+I +TK+ G+ + V F + E+AT+A+
Sbjct: 295 ----NLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAV 350
Query: 410 VCKHASSLGGSII 422
S + G I+
Sbjct: 351 -----SEMNGRIV 358
>gi|440797919|gb|ELR18993.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 767
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 238 ITGTNDRCTVLVSNLN----SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
+ G DR L S+L S ++ ED+L +LFS +G I+ +K+LR A V
Sbjct: 163 LVGAVDREKTLSSSLWIGNVSSKVREDELRSLFSPFGEIVSLKILRRS-QCAFVNYSSPA 221
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPN 321
A A ++G L+ RLE+NFSK P
Sbjct: 222 AATAAKRHVQGKLVKDMRLEINFSKPPK 249
>gi|452822290|gb|EME29311.1| splicing factor, arginine/serine-rich 7 [Galdieria sulphuraria]
Length = 258
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
L +LFS YG + ++LL D+A V+MGD AE A ++L G L G+R+ V F+K
Sbjct: 20 LEDLFSKYGRVRDVRLL---SDYAFVEMGDERDAEDARYYLDGKRLEGERIRVEFAK 73
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V +L S I+ +L + F+ +G+I +++R+ L G GF AE A+
Sbjct: 103 IFVGDL-SPEIETTQLRDAFAPFGDISDCRVVRDP--QTLKSKGYGFVSFVKKADAENAI 159
Query: 300 HFLKGALLFGKRLEVNFS--KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
+ G L + + N++ K P A+ ++ F+ ++ C+ +
Sbjct: 160 GTMNGQWLGSRAIRTNWATRKPPANRTQAEVDITTSTKPLTFDEVYNQSSPTNCT----V 215
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
+ + Q ++EE + +G+I ++F+ G A + F T+E AT A+V H S +
Sbjct: 216 YCGGITQGLSEELMQKTFSSYGAIQEIRVFKDKGY--AFIRFGTKEAATHAIVATHNSDV 273
Query: 418 GGSIIRISFSQLQSIRENSQ 437
G ++ S+ + + N Q
Sbjct: 274 NGQTVKCSWGKEATDPNNQQ 293
>gi|189233691|ref|XP_969160.2| PREDICTED: similar to AGAP005292-PA [Tribolium castaneum]
Length = 358
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V +L S I+ L F+ +G I +++R+ L G GF +AE A+
Sbjct: 53 IFVGDL-SPEIETQTLREAFAAFGEISDCRVVRDP--QTLKSKGYGFVSFIKKAEAESAI 109
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ + G L + + N++ ++ + S +N+++A N C+ ++
Sbjct: 110 NAMNGQWLGSRSIRTNWATRKPPAPKSEANSKPMSFDEIYNQSSATN----CT----VYC 161
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419
+ + E+ + +G I ++F+ G A + F T+E AT A+V H S +GG
Sbjct: 162 GGITNGLCEDLLQKTFLPYGIIQEIRVFKEKGY--AFIRFSTKESATHAIVGVHNSEIGG 219
Query: 420 SIIRISFSQ 428
++ S+ +
Sbjct: 220 QTVKCSWGK 228
>gi|290975622|ref|XP_002670541.1| predicted protein [Naegleria gruberi]
gi|284084101|gb|EFC37797.1| predicted protein [Naegleria gruberi]
Length = 918
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 68/249 (27%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH-----ALVQMGDGFQAELAV 299
C V+V NL + D LF LF LYG++I++ + +K DH A +Q + A+
Sbjct: 621 CVVIVKNL-PVQCTCDHLFVLFGLYGDVIKVSISLSKKDHKTPYMAFIQFKYPHEVGNAL 679
Query: 300 HFL-------------------KGALLFGKRLEV--------------NFSKHPNITQGA 326
FL G+ LFGK L + + SK + ++
Sbjct: 680 RFLGAPFYPTFNKYTPGNTPISSGSTLFGKELHIEPSFRIFDIIPPRSSKSKENDGSKDI 739
Query: 327 DTHEYMNSNLNRFNRNAAKNYRY---------CCSPTKMIHLSTLPQDVTEEEIVSHLE- 376
Y NS L+RF Y C P+ ++H+S + TE++I ++
Sbjct: 740 LFRSYENSPLHRFTPRQGTQESYQANMKKLMNICPPSPVLHISNVSGTTTEDKIRREIDK 799
Query: 377 ---------EHGSIVNTKLFE----------MNGKKQALVLFETEEQATEALVCKHASSL 417
+ IV+ K + M KK A++ ++ + AT LV H S+
Sbjct: 800 LFESPNQRKQKSRIVDFKFIDYKKTQTSDHKMKEKKSAIIEMDSIDAATTVLVELHDISI 859
Query: 418 GGSIIRISF 426
+ I F
Sbjct: 860 DSHHLNIKF 868
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 22/171 (12%)
Query: 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT------TMEQNAQGRGDEP 97
A ++ + V A L + + IR R Y++FS Q+L TM N
Sbjct: 266 AFVEFESVEKAQMFLDKFEGQKIKIRNRTAYLKFSEKQQLEGTPGGLTMNVNEDLNTVPV 325
Query: 98 NRILL----VTIHHML--------YPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
++ ++ TI H+ YP+ V++L +FS G +EKI F K+ Q+L+Q+
Sbjct: 326 SKTVVNTNNATIIHITFTHCDEYNYPLNVDLLFNLFSKFGTIEKINIFIKNELTQSLVQF 385
Query: 146 QLRPSAVVARSSLQGRNIYD--GCCQLDIQFS--NLDELQVNYNNERSRDF 192
+ A A ++G +Y +++IQFS + +EL + N R+RD+
Sbjct: 386 KSDTEATEAVKEMEGVFVYPEMKLYRMNIQFSKKSREELLIKETNHRNRDY 436
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V NL +D +DE L LFS +G ++ +K++R+ H+ G GF +A+ AV
Sbjct: 193 IYVKNLQAD-VDEQGLQELFSQFGKMLSVKVMRDSSGHS---RGFGFVNFETHEEAQKAV 248
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G + G+ L V ++ Q + +R NR N +++
Sbjct: 249 VHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVN----------LYV 298
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSL 417
L + +E++ +G I + K+ G + V F + E+AT+A+ + +
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 418 GGSIIRISFSQLQSIRE 434
G + ++ +Q + R+
Sbjct: 359 GTKPLYVALAQRKEERK 375
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 41/202 (20%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ + NL + ID L++ FS +GNI+ K+ + +H G GF A+ A+
Sbjct: 101 IFIKNLEAS-IDNKALYDTFSTFGNILSCKVACD--EHG--SRGFGFVHFETHEAAQHAI 155
Query: 300 HFLKGALLFGKRLEVNFSK---HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
+ + G LL ++ V K + GA E+ N
Sbjct: 156 NTMNGMLLNDHKVFVGHFKSRREREVELGARAMEFTN----------------------- 192
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQAL--VLFETEEQATEALVCKH 413
I++ L DV E+ + + G +++ K+ + +G + V FET E+A +A+V +
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMN 252
Query: 414 ASSLGGSIIRISFSQLQSIREN 435
+ G ++ + +Q + R+N
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQN 274
>gi|6563246|gb|AAF17217.1|AF117236_1 matrin 3 [Homo sapiens]
Length = 848
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 5 SKVIHVRNVGHEISEN----DLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
S+V+H+ +G E LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 397 SRVVHI--MGFSTEEKTLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 454
Query: 61 YTNVQPTIRGRNVYVQFS-SHQELTTMEQNAQGRGDEPNR----ILLVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D+ I L + H Y +
Sbjct: 455 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGY--SDS 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
+ ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 AVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 570
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGV 215
+ C +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 571 EKCKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTESST 623
>gi|145526162|ref|XP_001448892.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416458|emb|CAK81495.1| unnamed protein product [Paramecium tetraurelia]
Length = 362
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 95 DEPNRILLVTIHHM--LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV 152
D P++ILL+ I + +P+ ++L + F+ +G ++KI+ F++ +A ++Y A+
Sbjct: 7 DPPSKILLLVITQLSPTFPLCNDLLFEQFAKYGDIKKILIFERGKANKAFVEYYDVKHAI 66
Query: 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVN-YNNERSRDFT 193
AR G+ + +G +L I FS L L + + R D+T
Sbjct: 67 EARKDKLGKYLAEGEGKLTIHFSRLKNLDLEVVDKSRGTDYT 108
>gi|148706552|gb|EDL38499.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_c [Mus
musculus]
Length = 175
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 278 LRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT--------QGADTH 329
++ P ALV+MGD + E AV L LFGKRL V SK ++ G ++
Sbjct: 1 MKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSY 60
Query: 330 -EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKL 386
++ S NRF + P+ ++H +P VTEE +H + + K+
Sbjct: 61 KDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLPFIKYKV 120
Query: 387 FEMNGKKQ---ALVLFETEEQATEAL 409
F+ + L+ ++ + A EAL
Sbjct: 121 FDAKASAKTLSGLLEWKCKTDAVEAL 146
>gi|328792887|ref|XP_624017.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Apis
mellifera]
Length = 367
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V +L S I+ L F+ +G I +++R+ L G GF +AE A+
Sbjct: 57 IFVGDL-SPEIETQTLREAFAPFGEISDCRVVRDP--QTLKSKGYGFVSFVKKAEAESAI 113
Query: 300 HFLKGALLFGKRLEVNFS--KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
+ G L + + N++ K P A+ + +N+++ N C+ +
Sbjct: 114 GAMNGQWLGSRSIRTNWATRKPPAPKSEANAKPLTFDEV--YNQSSPTN----CT----V 163
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417
+ L +TEE + GSI ++F+ G A + F T+E AT A+V H + +
Sbjct: 164 YCGGLTNGLTEELMQKTFSPFGSIQEIRVFKDKGY--AFIRFSTKESATHAIVAVHNTDI 221
Query: 418 GGSIIRISFSQLQSIRENSQ 437
G ++ S+ + N+Q
Sbjct: 222 NGQTVKCSWGKESGDPNNAQ 241
>gi|351706804|gb|EHB09723.1| Putative RNA-binding protein 20, partial [Heterocephalus glaber]
Length = 1165
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +QFY
Sbjct: 455 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQFYQEK 514
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S +QEL
Sbjct: 515 SAVINGEKLLIRMSKRYQEL 534
>gi|146096324|ref|XP_001467770.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072136|emb|CAM70837.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 758
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL-- 302
CTV+VS +N + + L+ L ++GN+ +K + + Q A+ +L
Sbjct: 465 CTVMVSCVN-ESVPLYDLWVLLEVFGNVNSLKRQFRDRTNVMAQFQHPGDTLTAIQYLQH 523
Query: 303 ---KGALLFGKR----------LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRY 349
+G++L KR E S P T Y + R A N R
Sbjct: 524 CPFRGSVLRLKRFSGYQDRDTEWETKSSTDPATMAALFTTGYHHRTAPR----APVNVRG 579
Query: 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
P K ++++ L + ++++E+ ++E G F G K A+V ++ E A +AL
Sbjct: 580 RVHPDKNLYITNLTEAISDDELKGIMKEAG--FEPHAFFRRGPKGAIVAYKDTETAVDAL 637
Query: 410 VCKHASSLGGSIIRISFSQL 429
+ HA + +R++FS+
Sbjct: 638 IALHAKEVRERFLRVTFSRF 657
>gi|170057956|ref|XP_001864710.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
gi|167877220|gb|EDS40603.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
Length = 661
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ---------A 295
C V V ++ S + ED + F +G I I + + + Q GF A
Sbjct: 173 CRVYVGSI-SFELKEDTIRAAFLPFGPIKSINMSWDP----ITQKHKGFAFVEYEIPEGA 227
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 355
+LA+ + GA+L G+ ++V + N+ Q + + +NR
Sbjct: 228 QLALEQMNGAMLGGRNIKVG--RPSNMPQAQQVIDEIQEEAKNYNR-------------- 271
Query: 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVC 411
I+++++ D+TEE+I S E G+I K+ + + K A + ++T + A EA+
Sbjct: 272 -IYIASIHPDLTEEDIKSVFEAFGAIATCKMSQGSSAHSHKGYAFIEYQTNQSAIEAIAS 330
Query: 412 KHASSLGGSIIRISFS 427
+ LGG ++R+ S
Sbjct: 331 MNLFDLGGQLLRVGRS 346
>gi|324507674|gb|ADY43248.1| Heterogeneous nuclear ribonucleoprotein C [Ascaris suum]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 203 GRPSQSGYS----EAGVAFPQMANAAAIAAAFGGG----LPPGITGTND----------- 243
GRP +SGY A ++P + A ++ + G P G+ G N
Sbjct: 43 GRPLRSGYGFPGDSAAGSYPLVGGMYAFSSVYSGRNKRMHPGGVFGGNPQPLKQREISFD 102
Query: 244 ---------RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
R V V N+N++ I + + LFS YG ++ + L + +A +Q G+ +
Sbjct: 103 TSSKEPHLIRARVFVGNMNTNAITREDIIRLFSAYGTLLGVTLFKG---YAFIQYGNASE 159
Query: 295 AELAVHFLKGALLFGKRLEVNFS 317
A+LAV L G G L+V +
Sbjct: 160 ADLAVSVLNGYNWNGSILDVKLA 182
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAVHFLKGALL 307
D +D++KL FS YG I+ +K++ D + G GF A+ AV + G +
Sbjct: 199 DEMDDEKLKEFFSHYGKIVSVKVM---TDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREI 255
Query: 308 FGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 367
FG+++ V ++ Q A+ + R +++R TK I++ L + +
Sbjct: 256 FGQQVFVGRAQKKAERQ-AELKQLFE------QRKQERSWR--VRGTK-IYVKNLDETID 305
Query: 368 EEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSLGGSIIRIS 425
EE++ GSI+ K+ + G+ + L+ F + E+A A+ + LG + I+
Sbjct: 306 EEKLRKAFSSFGSIIRVKVMQEEGRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVNIA 365
Query: 426 FSQ 428
+Q
Sbjct: 366 LAQ 368
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ V NL +DE L +LFS +G ++ +K++R+ H+ G GF +A+ AV
Sbjct: 193 IYVKNL-PGHVDERGLQDLFSQFGKMLSVKVMRDDSGHS---RGFGFVNFEKHEEAQKAV 248
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G + G+ L V ++ Q + ++ +R NR N +++
Sbjct: 249 MDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVN----------LYV 298
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSL 417
L + +E++ +G I + K+ G K V F + E+AT+A+ + +
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRII 358
Query: 418 GGSIIRISFSQLQSIRE 434
G + ++ +Q + R+
Sbjct: 359 GTKPLYVALAQRKEERK 375
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V + NL D ID L++ FS +GNI+ K++ + DH G GF A+ A+
Sbjct: 101 VFIKNLE-DSIDNKALYDTFSTFGNILSCKVVCD--DHG--SRGFGFVHFETHEAAQQAI 155
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G LL +++ V K +R R A R + I++
Sbjct: 156 STMNGMLLNDRKVFVGHFK------------------SRREREAELGAR--ATAFTNIYV 195
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASS 416
LP V E + + G +++ K+ + + V FE E+A +A++ +
Sbjct: 196 KNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQ 255
Query: 417 LGGSIIRISFSQLQSIREN 435
+ G ++ + +Q + R+N
Sbjct: 256 VSGRLLYVGRAQKRGERQN 274
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF------- 293
N+ V V N D +D+++L +FS YG + +K++ D G GF
Sbjct: 285 VNEFTNVYVKNFGDD-MDDERLKEVFSKYGKTLSVKVM---TDSGGKSKGFGFVSFDSHE 340
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
A+ AV + G + G+ L V ++ + Q + RF R C
Sbjct: 341 AAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRR---------CQG 391
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALVC 411
K+ ++ L + +E++ GSI K+ G+ + L+ F + E+AT+A+
Sbjct: 392 MKL-YIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAMAE 450
Query: 412 KHASSLGGSIIRISFSQLQSIREN 435
+ LG + I+ +Q R+N
Sbjct: 451 MNGRILGSKPLYIALAQRPXERKN 474
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,490,856,731
Number of Sequences: 23463169
Number of extensions: 268437032
Number of successful extensions: 682710
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 1554
Number of HSP's that attempted gapping in prelim test: 674370
Number of HSP's gapped (non-prelim): 7441
length of query: 437
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 291
effective length of database: 8,933,572,693
effective search space: 2599669653663
effective search space used: 2599669653663
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)