BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013749
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/432 (86%), Positives = 409/432 (94%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITG 240
QVNYNN+RSRD+TNPNLPAEQKGR S Y + GVA+PQMAN +AIAAAFGGGLPPGITG
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGGGLPPGITG 240
Query: 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 300
TNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVH
Sbjct: 241 TNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH 300
Query: 301 FLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
FLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCCSPTKMIHLS
Sbjct: 301 FLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360
Query: 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420
TLPQDVTEEE+++H++EHG++VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGS
Sbjct: 361 TLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGS 420
Query: 421 IIRISFSQLQSI 432
IIRISFSQLQ+I
Sbjct: 421 IIRISFSQLQTI 432
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
N+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 413 NVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 178/504 (35%), Positives = 265/504 (52%), Gaps = 85/504 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------A 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP A
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMA 294
Query: 200 EQKGRP---SQSGYSEAG----VAFPQMANAAAIAAAFGGGLPP---------------- 236
G P S S Y+ AG A PQ A + G L P
Sbjct: 295 AAFGAPGIMSASPYAGAGFPPTFAIPQAATVS--VPNVHGALAPLAIPSAAARAAAAGRI 352
Query: 237 ---GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293
G+ G + +LVSNLN +R+ LF LF +Y ++ R+K+L NK ++ALVQM DG
Sbjct: 353 AIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGS 411
Query: 294 QAELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAK 345
QA+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +K
Sbjct: 412 QAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSK 470
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
N++ P+ +HLS +P ++EE++ +G IV F +K AL+ + E+A
Sbjct: 471 NFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEA 530
Query: 406 TEALVCKHASSLG-GSIIRISFSQ 428
+AL+ H LG +R+SFS+
Sbjct: 531 IQALIDLHNHDLGENHHLRVSFSK 554
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 340 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 396 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 436
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 269/477 (56%), Gaps = 57/477 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 293
Query: 210 YSEAGVAFPQMANA---------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260
+ G++ P + A AA AAA G PG+ G + +LVSNLN +R+
Sbjct: 294 AAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQ 352
Query: 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH
Sbjct: 353 SLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQ 412
Query: 321 NI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
++ QG T +Y NS L+RF + +KN++ P+ +HLS +P ++E+++
Sbjct: 413 SVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLK 471
Query: 373 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428
+G IV F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 472 ILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 291 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
DG ++AV +G+ + + P I G ++ +F ++ R
Sbjct: 2 DGIVPDIAVGTKRGS---DELFSACVTNGPFIMSGTSASTANGNDSKKFKGDS----RSA 54
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 55 GVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMV 111
Query: 411 CKHAS---SLGGSIIRISFSQLQSIRENS 436
+ S L G I I FS + ++ +S
Sbjct: 112 NYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/478 (35%), Positives = 268/478 (56%), Gaps = 59/478 (12%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVA 216
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A A
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA--A 293
Query: 217 FPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRIDE 259
F + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 294 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMVTP 352
Query: 260 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 353 QSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKH 412
Query: 320 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 413 QTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLR 472
Query: 373 SHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 473 TLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 291 DGFQAELAVHFLKGA--LLFGKRLEV---NFSKHPNITQGADTHEYMNSNLNRFNRNAAK 345
DG E+AV +G+ LL G L N S G D+ ++ +
Sbjct: 2 DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGED---------- 51
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+ +P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 52 --KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 63/480 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ A
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAA- 292
Query: 215 VAFPQMANAAAIAAAFGG-GLP----------------PGITGTNDRCTVLVSNLNSDRI 257
AF + + A+ A +P PG++ + +LVSNLN + +
Sbjct: 293 -AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN-TVLLVSNLNEEMV 350
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V S
Sbjct: 351 TPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLS 410
Query: 318 KHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370
KH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE+
Sbjct: 411 KHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEED 470
Query: 371 IVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+ + G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 471 LRTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 291 DGFQAELAVHFLKGA--LLFGKRLEV---NFSKHPNITQGADTHEYMNSNLNRFNRNAAK 345
DG E+AV +G+ LL G L N S G D+ ++ +
Sbjct: 2 DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGED---------- 51
Query: 346 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405
+ +P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 52 --KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/502 (34%), Positives = 266/502 (52%), Gaps = 82/502 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 212 EAGVAFPQMANAAAIAAAF----------GGGLP-------------------------- 235
A P + +A+ A A G +P
Sbjct: 293 AAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAI 352
Query: 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQA 295
PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALV+M DG QA
Sbjct: 353 PGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQA 411
Query: 296 ELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNY 347
+LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +KN+
Sbjct: 412 QLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNF 470
Query: 348 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATE 407
+ P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+A +
Sbjct: 471 QNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQ 530
Query: 408 ALVCKHASSLG-GSIIRISFSQ 428
AL+ H LG +R+SFS+
Sbjct: 531 ALIELHNHDLGENHHLRVSFSK 552
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 264/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 265
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + A+ A G G + PG +G
Sbjct: 266 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 325
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 326 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 385
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 175/496 (35%), Positives = 265/496 (53%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 265
Query: 207 -------QSGYSEA-----GVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 241
S Y+ A +AFPQ A + +A+ A G G + PG +G
Sbjct: 266 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGI 325
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A++
Sbjct: 326 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNH 385
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 391 GKKQALVLFETEEQA 405
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 72/496 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 56 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 294
Query: 210 YSEAGVAFPQMANAAAIAAAFG-------------GGLP---------------PGITGT 241
+ G+ A AA A A G G L PG +G
Sbjct: 295 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 354
Query: 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 301
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 355 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
Query: 302 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 353
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 473
Query: 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 474 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 533
Query: 414 ASSLG-GSIIRISFSQ 428
LG +R+SFS+
Sbjct: 534 NHDLGENHHLRVSFSK 549
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 340 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 41 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 98
Query: 397 VLFETEEQA 405
+ +EE A
Sbjct: 99 LEMASEEAA 107
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 261/474 (55%), Gaps = 54/474 (11%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS--QSG 209
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS Q+
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTM 292
Query: 210 YSEAGVAFPQMANA--------AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261
+ G++ P + A AA AAA PG+ G + +LVSNLN +R+
Sbjct: 293 AAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 351
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA--VHFLKGALLFGKRLEVNFSKH 319
LF LF +YG++ R+K+L NK ++ALVQM DG QA+L + A V S+
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASEC 411
Query: 320 PNITQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 375
+G + T +Y +S L RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 412 AAAREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLF 470
Query: 376 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428
+G +V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 471 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 524
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 332 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 388 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 436
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 224/452 (49%), Gaps = 60/452 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 298 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 357
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 358 RDTPELVAYPLPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 410
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 411 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 470
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI- 381
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 471 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLP 530
Query: 382 -VNTKLFEMNGKKQ---ALVLFETEEQATEAL 409
+ K+F+ + L+ ++ + A EAL
Sbjct: 531 FIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 562
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 409
S + ++H+ L + V E ++V LE+ G+I + M K+QALV FE + A E +
Sbjct: 122 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MPFKRQALVEFENIDSAKECV 177
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 60/453 (13%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGVAFP-----QMAN 222
V N+ S D+T P L +G+ Q GY G P +M +
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 223 -----------AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN 271
A ++ GG P G V+VS L+ +++ ++FNLF LYGN
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCLYGN 361
Query: 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------- 323
I ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELE 421
Query: 324 QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382
G ++ ++ S NRF + P+ ++H +P VTEE +H +
Sbjct: 422 DGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLT 481
Query: 383 NTKLFEMNGKKQA-----LVLFETEEQATEALV 410
K + K A L+ +E + A EAL
Sbjct: 482 FIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410
S + ++H+ L + V E ++V LE+ G+I + M K+QALV FE + A E +
Sbjct: 73 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MPFKRQALVEFENIDSAKECVT 129
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 275 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 334
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 335 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKM 394
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG++L V S
Sbjct: 395 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 454
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 455 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 512
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G + + +GK + L+ +E++ A E L
Sbjct: 513 TEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 226/467 (48%), Gaps = 64/467 (13%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNL---------PAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232
V N++ + D+TNPNL P +++ +P G A P + G
Sbjct: 272 VFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYG 331
Query: 233 GLPPGITGTN-----------------------------------DRCTVLVSNLNSDRI 257
PP G D ++V L+ ++
Sbjct: 332 PPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKM 391
Query: 258 DEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317
+ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +FG+++ V S
Sbjct: 392 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 451
Query: 318 KHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDV 366
K P I G ++ S NRF+ AAKN P+ ++H P +V
Sbjct: 452 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPSNVLHFFNAPLEV 509
Query: 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 409
TEE +E G T + +GK + L+ ++++ A E L
Sbjct: 510 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 556
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 176/342 (51%), Gaps = 54/342 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
+ +S +L + + + RSRD+TNP LP Q A
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ--------------------------TAMD 224
Query: 232 GGLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPD 283
G + P + + L+ N+ + D L +FS YG + +I + +N
Sbjct: 225 GSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGST 283
Query: 284 HALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 322
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 284 QALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 325
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 59/266 (22%)
Query: 15 HEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72
HE+S + + +F FG + K+ A QAL+Q DV +A A + + GR+
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRS 174
Query: 73 V--------------YVQFSSHQEL---------------------TTMEQN------AQ 91
+ + +S+H +L T M+ + A
Sbjct: 175 IPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGAD 234
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ E + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+
Sbjct: 235 GKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPT 294
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRPSQ 207
A +A+ +L+G IYD G C+L + +S +L V +++SRD+T P+L QKG P+
Sbjct: 295 AAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG-PAV 353
Query: 208 SGYS-EAGVAFPQMANAAAIAAAFGG 232
SG + AG PQ A + + +GG
Sbjct: 354 SGSAPPAGWQNPQ---AQSQYSGYGG 376
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 179/338 (52%), Gaps = 44/338 (13%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVVGNVLLVTIEGDDARMVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-------GCCQLD 171
VFS GFV KI TF+K+AG+QAL+Q+ +A A+ +L GR+I G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231
I +S +L V + + RSRD+TNP LP S +G GV +M
Sbjct: 192 ITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDS-TGQVAVGVDGKKM----------- 239
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQ 288
VL++++ + + + D L +F+ +G + +I + +N AL+Q
Sbjct: 240 ----------EPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQ 289
Query: 289 MGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 323
D A +A L+G ++ +L + +S+H +++
Sbjct: 290 YSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 106/212 (50%), Gaps = 39/212 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINA-LQFYTNVQP------TIRG 70
D+L L F FG + K+ A QAL+Q D +A A L P T+
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQ 187
Query: 71 RNVYVQFSSHQELTTMEQN---------------------------AQGRGDEP-NRILL 102
++ + +S+H +LT Q+ G+ EP + +LL
Sbjct: 188 CSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLL 247
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VF+ G V+KI F K+ G QALIQY +AVVA+ +L+G
Sbjct: 248 ASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHC 307
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFT 193
IYDG C+L I +S +L + NN+RSRD+T
Sbjct: 308 IYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 347 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 406
+RY P+K++HL LP + TEEE++ + G++VNTK + QA + FE QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 407 EALVCKHASS-----LGGSIIRISFSQLQSIREN 435
+ ++ +ASS + G + + +S Q I N
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 55/210 (26%)
Query: 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---------- 281
GG G G+ + T L+ N + ED++ +LFS G I +KL+R+K
Sbjct: 171 GGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNP 230
Query: 282 --PDHALVQMGDGF-------QAELAVHFLKGALLFGKRLEVNFSK-HPNITQGADTHEY 331
P +G GF AE AV+ L G L K ++V+F++ + +GA+
Sbjct: 231 QAPSKGQ-SLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN---- 285
Query: 332 MNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391
+++S LP+ +T++E+ + G+I+ +++ + G
Sbjct: 286 -------------------------LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAG 320
Query: 392 -----KKQALVLFETEEQATEALVCKHASS 416
K + F+ E+AT A++ + ++
Sbjct: 321 NDTQTKGVGFIRFDKREEATRAIIALNGTT 350
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 55/211 (26%)
Query: 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------- 281
G G G G+ + T L+ N + ED++ +LFS G I +KL+R+K
Sbjct: 134 GSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLN 193
Query: 282 ---PDHALVQMGDGF-------QAELAVHFLKGALLFGKRLEVNFSK-HPNITQGADTHE 330
P +G GF AE AV+ L G L K ++V+F++ + +GA+
Sbjct: 194 PQAPSKGQ-SLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN--- 249
Query: 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 390
+++S LP+ +T++E+ + G+I+ +++ +
Sbjct: 250 --------------------------LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNA 283
Query: 391 G-----KKQALVLFETEEQATEALVCKHASS 416
G K + F+ E+AT A++ + ++
Sbjct: 284 GNDTQTKGVGFIRFDKREEATRAIIALNGTT 314
>sp|Q3UQS8|RBM20_MOUSE RNA-binding protein 20 OS=Mus musculus GN=Rbm20 PE=1 SV=3
Length = 1199
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 579
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 580 PAIINGEKLLIRMSTRYKEL 599
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 237 GITGTND--RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 294
G+T ND TV V L++ + +D L N+FS YG I+ +K+ K VQ +
Sbjct: 251 GVTTDNDPNNTTVFVGGLDAS-VTDDHLKNVFSQYGEIVHVKIPAGK-RCGFVQFSEKSC 308
Query: 295 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEY 331
AE A+ L G L G + +++ + P+ Q D ++
Sbjct: 309 AEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQF 345
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416
+ + L VT++ + + ++G IV+ K+ GK+ V F + A EAL +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI--PAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Query: 417 LGGSIIRISFSQLQSIREN 435
LGG+ +R+S+ + S +++
Sbjct: 321 LGGTTVRLSWGRSPSNKQS 339
>sp|E9PT37|RBM20_RAT RNA-binding protein 20 OS=Rattus norvegicus GN=Rbm20 PE=2 SV=1
Length = 1207
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 521 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 580
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 581 PALINGEKLLIRMSTRYKEL 600
>sp|Q5T481|RBM20_HUMAN RNA-binding protein 20 OS=Homo sapiens GN=RBM20 PE=1 SV=3
Length = 1227
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 577
Query: 65 QPTIRGRNVYVQFS 78
I G + ++ S
Sbjct: 578 SAVINGEKLLIRMS 591
>sp|P43244|MATR3_RAT Matrin-3 OS=Rattus norvegicus GN=Matr3 PE=1 SV=2
Length = 845
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 26/165 (15%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 449
Query: 57 ALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP-------NRIL-LVTIHHM 108
A+ +YT + G+ V V S Q+ +++ +G+ DE R++ L + H
Sbjct: 450 AVDYYTTTPALVFGKPVRVHLS--QKYKRIKK-PEGKPDEKFDQKQELGRVIHLSNLPHS 506
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
Y + + ++ P+G ++ + + + QA I+ + R A+
Sbjct: 507 GY--SDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMA 547
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 6 KVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+VIH+ N+ H S++ +L+L +P+G I +++R K+QA ++M+ A+ +
Sbjct: 496 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKK 555
Query: 65 QPTIRGRNVYVQFS 78
+GR V V S
Sbjct: 556 ALWFQGRCVKVDLS 569
>sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens GN=MATR3 PE=1 SV=2
Length = 847
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 449
Query: 57 ALQFYTNVQPTIRGRNVYVQFS-SHQELTTMEQNAQGRGDEPNR----ILLVTIHHMLYP 111
A+ +YT + G+ V V S ++ + E + D+ I L + H Y
Sbjct: 450 AVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGY- 508
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ + ++ P+G ++ + + + QA I+ + R A+
Sbjct: 509 -SDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMA 547
>sp|Q8K310|MATR3_MOUSE Matrin-3 OS=Mus musculus GN=Matr3 PE=1 SV=1
Length = 846
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 449
Query: 57 ALQFYTNVQPTIRGRNVYVQFS-SHQELTTMEQNAQGRGDEPNR----ILLVTIHHMLYP 111
A+ +YT + G+ V V S ++ + E + D+ I L + H Y
Sbjct: 450 AVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGY- 508
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ + ++ P+G ++ + + + QA I+ + R A+
Sbjct: 509 -SDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMA 547
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 6 KVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+VIH+ N+ H S++ +L+L +P+G I +++R K+QA ++M+ A+ +
Sbjct: 496 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKK 555
Query: 65 QPTIRGRNVYVQFS 78
+GR V V S
Sbjct: 556 ALWFQGRCVKVDLS 569
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 302
V + N D +D+ +L +FS +GN + +K++ + + V G+ +A+ AV +
Sbjct: 193 VYIKNFGED-MDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 303 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362
G + G+ + V ++ QG ++ R NR N +++ L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNL 301
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS 420
+ ++ + +G+I +TK+ G K V F + E+AT+A+ + +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 421 IIRISFSQLQSIRE 434
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMQDVPSAINALQFYT 62
PS+ + VRN+ + +++L LF+PFG I L +++ ++ D+ +A A++
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 255
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
N +R R + + FS +E + + QG + I ++ ++ + L Q+F
Sbjct: 256 NT--LLRKRTLDIHFSIPKENPSEKDMNQG---------TLVIFNVDTTVSNDELLQLFG 304
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDI 172
+G + +I + F I+Y A A +L I C +L++
Sbjct: 305 AYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 85/225 (37%), Gaps = 62/225 (27%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G+ P+R L V ++ + L +F P G + + T KS GF + Y +R +A
Sbjct: 193 GEHPSRTLFV--RNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIR-AAHA 249
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A +LQ N LDI FS +P E PS+ ++
Sbjct: 250 AMRALQ--NTLLRKRTLDIHFS---------------------IPKEN---PSEKDMNQG 283
Query: 214 GVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNII 273
T+++ N+++ + D+L LF YG I
Sbjct: 284 --------------------------------TLVIFNVDT-TVSNDELLQLFGAYGEIR 310
Query: 274 RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
I+ N+ H ++ D AE A+ L + + GK +++ S+
Sbjct: 311 EIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 355
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRI--KLLRNKPDHALVQMGDGFQAELAVHFLK 303
TV V NL D I E ++ +LFS YG +++I K+ P +A V+ D AE A+H
Sbjct: 8 TVYVGNLPGD-IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 304 GALLFGKRLEVNFS 317
G G RL V +
Sbjct: 67 GYDFDGHRLRVELA 80
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 24/199 (12%)
Query: 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAEL 297
+ V N+NS+ DE + LF+ +G I+ L ++ D L G GF A
Sbjct: 219 TNLYVKNINSETTDE-QFQELFAKFGPIVSASLEKDA-DGKL--KGFGFVNYEKHEDAVK 274
Query: 298 AVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 357
AV L + L G++L V ++ N +Y L + + N +
Sbjct: 275 AVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN----------L 324
Query: 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-NGKKQAL--VLFETEEQATEALVCKHA 414
+ L V +E++ +G+I + K+ NGK + V F T E+AT+A+ K+
Sbjct: 325 FVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQ 384
Query: 415 SSLGGSIIRISFSQLQSIR 433
+ G + ++ +Q + +R
Sbjct: 385 QIVAGKPLYVAIAQRKDVR 403
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFL 302
+ + NL+ D ID L++ FS++G+I+ K+ ++ V + A+ A+ L
Sbjct: 128 IFIKNLHPD-IDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 303 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362
G LL G+ + Y+ +L+R R++ + +++ +
Sbjct: 187 NGMLLNGQEI------------------YVAPHLSRKERDS--QLEETKAHYTNLYVKNI 226
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKL-FEMNGKKQ--ALVLFETEEQATEALVCKHASSLGG 419
+ T+E+ + G IV+ L + +GK + V +E E A +A+ + S L G
Sbjct: 227 NSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNG 286
Query: 420 SIIRISFSQLQSIR 433
+ + +Q ++ R
Sbjct: 287 EKLYVGRAQKKNER 300
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 84/194 (43%), Gaps = 17/194 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 302
V + N D +D+ +L +FS +GN + +K++ + + V G+ +A+ AV +
Sbjct: 193 VYIKNFGED-MDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 303 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362
G + G+ + V ++ QG ++ R NR N +++ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNL 301
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS 420
+ ++ + +G+I + K+ G K V F + E+AT+A+ + +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 421 IIRISFSQLQSIRE 434
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318
L LFS YG + + + R D+A V+ GD A+ A H+L G G R+ V FS+
Sbjct: 27 LERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 302
+ V NL D +DE L +LFS +G ++ +K++R+ H+ V +A+ AV +
Sbjct: 193 IYVKNLPVD-VDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 303 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362
G + G+ L ++ Q + +R R N +++ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN----------LYVKNL 301
Query: 363 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
+ ++++ +G I + K+ G + V F + E+AT+A+ + +G
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 421 IIRISFSQLQSIRE 434
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 41/202 (20%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
+ + NL D ID L++ FS +GNI+ K+ + +H G GF A+ A+
Sbjct: 101 IFIKNLE-DSIDNKALYDTFSTFGNILSCKVACD--EHG--SRGFGFVHFETHEAAQQAI 155
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQ---GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 356
+ + G LL +++ V K + GA E+ N
Sbjct: 156 NTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN----------------------- 192
Query: 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ---ALVLFETEEQATEALVCKH 413
I++ LP DV E+ + + G +++ K+ N V FE E+A +A+V +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 414 ASSLGGSIIRISFSQLQSIREN 435
+ G ++ +Q + R+N
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQN 274
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 36/200 (18%)
Query: 241 TNDRCTVLVSNLN-SDRIDEDKLFNLFSLYGNIIRIK-LLRNKPD---HALVQMGDGFQA 295
+ D TV VSNL S E KL LF + G +++I+ + N+ D + V+ G+ A
Sbjct: 700 SKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSA 759
Query: 296 ----ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 351
EL ++G +F V+ SK+P+ K +RY
Sbjct: 760 QQALELDRKIVEGRPMFVSPC-VDKSKNPDF----------------------KVFRYST 796
Query: 352 SPTK-MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQAL--VLFETEEQATE 407
+ K + +S LP T+EE+ + HG++ + +L GK + L V +E E QA++
Sbjct: 797 TLEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ 856
Query: 408 ALVCKHASSLGGSIIRISFS 427
A++ ++ ++I+++ S
Sbjct: 857 AVMKMDGMTIRENVIKVAIS 876
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 36/224 (16%)
Query: 219 QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 278
Q+++ + G PP + + V NL D +D +KL +F G + +++
Sbjct: 35 QVSDEGGVEGGQGFSEPP------EEAKLFVGNLPYD-VDSEKLAGIFDAAGVVEIAEVI 87
Query: 279 RNKPDH-----ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMN 333
N+ V M +AE AV L G + G++L VN + + A ++
Sbjct: 88 YNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDF-- 145
Query: 334 SNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF--EMNG 391
P+ +++ LP DV + EHG +V+ ++ G
Sbjct: 146 ------------------EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETG 187
Query: 392 KKQ--ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433
+ + V +E + +A+ +L G +R++ ++ + R
Sbjct: 188 RSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 238 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL 297
+ G + V V NL + + +L FS YG + + + RN P A V+ D AE
Sbjct: 33 LWGGDSETKVYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAED 91
Query: 298 AVHFLKGALLFGKRLEVNFS 317
AV L G ++ G R+ V S
Sbjct: 92 AVRGLDGKVICGSRVRVELS 111
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINAL 58
++I V+N H + +L +LF PFG I +L+M + A++Q +DVP+A A
Sbjct: 487 DRIILVKNFPHGTTREELAELFLPFGKIERLLMPPSGTIAIIQYRDVPAARGAF 540
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 37/188 (19%)
Query: 246 TVLVSNLNSDRIDEDKLFNLFSLYGNI--IRIKLLRNKPDHALVQMGDGFQAELAVHFLK 303
T+ + NL D L N+F +G I I IK + P +A +Q D A+ +
Sbjct: 440 TLFIGNLEKTTTYHD-LRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMD 498
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L RL++ F K PT + L L
Sbjct: 499 GEYLGNNRLKLGFGKS--------------------------------MPTNCVWLDGLS 526
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 423
+V+++ + H +G +V + G ALVL+ E A A+ +GG+ I+
Sbjct: 527 SNVSDQYLTRHFCRYGPVVKVVFDRLKG--MALVLYSEIEDAQAAVKETKGRKIGGNKIK 584
Query: 424 ISFSQLQS 431
+ F+ +S
Sbjct: 585 VDFANRES 592
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V V NL + + +L FS YG + + + RN P A V+ D AE AV L G +
Sbjct: 13 VYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
Query: 307 LFGKRLEVNFS 317
+ G R+ V S
Sbjct: 72 ICGSRVRVELS 82
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306
V V NL + + +L FS YG + + + RN P A V+ D AE AV L G +
Sbjct: 13 VYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
Query: 307 LFGKRLEVNFS 317
+ G R+ V S
Sbjct: 72 ICGSRVRVELS 82
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 303
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 421 IIRISFSQ 428
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 241 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 408
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 409 LVCKHASSLGGSIIRISFSQLQ 430
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRVVGSKPLHVTLGQAR 379
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 299
V + N + +D++ L LFS +G + +K++R D G GF A AV
Sbjct: 193 VYIKNFGEE-VDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAV 248
Query: 300 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 359
+ G + GK + V ++ Q ++ R +R N +++
Sbjct: 249 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN----------LYI 298
Query: 360 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSL 417
L + +E++ GSI + K+ +G+ + V F + E+AT+A+ + +
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 418 GGSIIRISFSQLQSIRE 434
G + ++ +Q + R+
Sbjct: 359 GSKPLYVALAQRKEERK 375
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 303
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 421 IIRISFSQ 428
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 241 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 408
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 409 LVCKHASSLGGSIIRISFSQLQ 430
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 303
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 421 IIRISFSQ 428
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 241 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 408
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 409 LVCKHASSLGGSIIRISFSQLQ 430
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 303
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 421 IIRISFSQ 428
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 241 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 408
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 409 LVCKHASSLGGSIIRISFSQLQ 430
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 303
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 421 IIRISFSQ 428
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 241 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 408
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 409 LVCKHASSLGGSIIRISFSQLQ 430
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 303
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 304 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 364 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 420
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 421 IIRISFSQ 428
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 241 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 293
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 294 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 350
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 408
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 409 LVCKHASSLGGSIIRISFSQLQ 430
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|Q14966|ZN638_HUMAN Zinc finger protein 638 OS=Homo sapiens GN=ZNF638 PE=1 SV=2
Length = 1978
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 18 SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQP-TIRGRNVYV 75
+E D+ +LFQPFG + ++++ + +A L+M+ AI A+ Y P TI+G++V +
Sbjct: 689 TEEDVRKLFQPFGKVNDVLIVPYRKEAYLEME-FKEAITAIMKYIETTPLTIKGKSVKI 746
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 37/215 (17%)
Query: 227 AAAFGGGLPPGI-TGTNDRCTVLVSNLNSDRIDED-KLFNLFSLYGNIIRIK-LLRNKPD 283
AA+ +P + + D TV VSNL + D KL LF G +++I+ + N+ D
Sbjct: 685 AASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGD 744
Query: 284 ---HALVQMGD---GFQA-ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNL 336
+ V+ + QA E+ ++G +F V+ SK+P+
Sbjct: 745 FRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC-VDKSKNPDF-------------- 789
Query: 337 NRFNRNAAKNYRYCCSPTK-MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ- 394
K +RY S K + +S LP T+EE+ + HG++ + +L K
Sbjct: 790 --------KVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPK 841
Query: 395 --ALVLFETEEQATEALVCKHASSLGGSIIRISFS 427
A V +E E QA++A++ ++ +II+++ S
Sbjct: 842 GLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 876
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,373,838
Number of Sequences: 539616
Number of extensions: 6500158
Number of successful extensions: 18117
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 17627
Number of HSP's gapped (non-prelim): 628
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)