Query 013749
Match_columns 437
No_of_seqs 202 out of 2725
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.2E-67 9.1E-72 510.7 50.0 425 4-430 1-480 (481)
2 KOG1190 Polypyrimidine tract-b 100.0 1.5E-62 3.2E-67 430.5 29.7 425 1-430 24-491 (492)
3 TIGR01628 PABP-1234 polyadenyl 100.0 5.9E-54 1.3E-58 429.7 35.0 344 7-432 2-366 (562)
4 KOG1456 Heterogeneous nuclear 100.0 5.1E-47 1.1E-51 328.9 37.9 425 2-431 28-492 (494)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-43 3.4E-48 335.6 33.2 301 3-320 1-349 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.4E-42 1.6E-46 324.2 31.7 268 101-432 4-351 (352)
7 KOG0123 Polyadenylate-binding 100.0 1.3E-41 2.9E-46 314.2 24.4 338 6-433 2-352 (369)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4E-40 8.6E-45 321.3 33.6 276 102-431 4-352 (481)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 5.6E-40 1.2E-44 316.6 28.9 294 5-382 58-369 (578)
10 KOG0145 RNA-binding protein EL 100.0 1.3E-39 2.9E-44 269.7 24.1 284 4-320 40-358 (360)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 1.3E-38 2.8E-43 307.2 29.4 278 50-433 18-310 (578)
12 KOG0117 Heterogeneous nuclear 100.0 7E-38 1.5E-42 278.7 27.9 284 46-435 39-336 (506)
13 KOG0127 Nucleolar protein fibr 100.0 1.1E-36 2.4E-41 277.1 29.3 399 6-412 6-516 (678)
14 TIGR01628 PABP-1234 polyadenyl 100.0 6E-37 1.3E-41 307.0 28.4 247 102-433 2-264 (562)
15 KOG0117 Heterogeneous nuclear 100.0 1.5E-36 3.2E-41 270.3 23.0 237 5-322 83-333 (506)
16 KOG0110 RNA-binding protein (R 100.0 7.1E-37 1.5E-41 287.5 20.5 374 5-432 227-695 (725)
17 TIGR01622 SF-CC1 splicing fact 100.0 1.6E-35 3.6E-40 290.2 31.1 309 3-320 87-448 (457)
18 KOG0145 RNA-binding protein EL 100.0 5.9E-36 1.3E-40 248.1 23.3 265 102-431 43-359 (360)
19 TIGR01645 half-pint poly-U bin 100.0 1.6E-34 3.4E-39 279.1 30.2 167 4-177 106-283 (612)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-34 3.8E-39 287.0 30.9 294 99-431 174-503 (509)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-34 2.8E-39 288.0 26.6 281 2-320 172-502 (509)
22 TIGR01622 SF-CC1 splicing fact 100.0 9E-34 2E-38 278.0 31.3 280 100-432 89-450 (457)
23 KOG0148 Apoptosis-promoting RN 100.0 1.4E-34 3E-39 241.5 18.3 175 246-435 64-243 (321)
24 KOG0144 RNA-binding protein CU 100.0 2.5E-34 5.4E-39 254.9 20.7 161 6-179 35-207 (510)
25 KOG0127 Nucleolar protein fibr 100.0 8.2E-33 1.8E-37 252.0 25.2 292 101-430 6-378 (678)
26 KOG0148 Apoptosis-promoting RN 100.0 2.3E-33 4.9E-38 234.3 18.8 232 3-322 4-240 (321)
27 KOG0144 RNA-binding protein CU 100.0 5E-33 1.1E-37 246.7 17.0 275 98-433 32-507 (510)
28 TIGR01659 sex-lethal sex-letha 100.0 7.1E-30 1.5E-34 235.3 22.2 163 240-431 103-276 (346)
29 KOG0123 Polyadenylate-binding 100.0 7.2E-29 1.6E-33 229.6 21.9 236 103-431 4-247 (369)
30 KOG4212 RNA-binding protein hn 100.0 4.6E-28 1E-32 215.3 22.4 236 3-317 42-291 (608)
31 TIGR01659 sex-lethal sex-letha 100.0 7.7E-29 1.7E-33 228.5 18.2 159 3-177 105-274 (346)
32 TIGR01645 half-pint poly-U bin 100.0 3.8E-28 8.1E-33 235.0 21.1 171 243-431 106-285 (612)
33 KOG0110 RNA-binding protein (R 99.9 4.5E-27 9.8E-32 221.8 17.5 262 4-322 384-695 (725)
34 KOG0124 Polypyrimidine tract-b 99.9 6.4E-26 1.4E-30 197.3 16.8 274 100-426 113-531 (544)
35 KOG1190 Polypyrimidine tract-b 99.9 7.5E-25 1.6E-29 193.5 23.6 284 7-319 152-490 (492)
36 KOG0147 Transcriptional coacti 99.9 1.8E-25 3.8E-30 205.6 15.0 304 6-320 180-528 (549)
37 KOG0109 RNA-binding protein LA 99.9 2.9E-25 6.2E-30 187.8 11.4 147 246-430 4-150 (346)
38 KOG0131 Splicing factor 3b, su 99.9 1.4E-24 3E-29 171.5 12.1 162 244-433 9-180 (203)
39 KOG0124 Polypyrimidine tract-b 99.9 8.7E-24 1.9E-28 184.1 17.4 155 6-165 114-279 (544)
40 KOG0147 Transcriptional coacti 99.9 8.8E-24 1.9E-28 194.4 16.7 277 103-431 182-529 (549)
41 KOG4211 Splicing factor hnRNP- 99.9 1.8E-21 4E-26 176.8 27.7 393 4-411 9-491 (510)
42 KOG0146 RNA-binding protein ET 99.9 7.5E-23 1.6E-27 171.0 13.5 81 240-321 281-366 (371)
43 KOG0146 RNA-binding protein ET 99.9 1.3E-22 2.9E-27 169.5 11.7 190 243-433 18-368 (371)
44 KOG0109 RNA-binding protein LA 99.9 2.7E-22 5.9E-27 169.9 10.5 145 7-176 4-148 (346)
45 KOG0131 Splicing factor 3b, su 99.9 8.5E-22 1.8E-26 155.8 11.0 155 5-176 9-175 (203)
46 KOG1456 Heterogeneous nuclear 99.9 3.6E-19 7.9E-24 155.9 25.2 280 98-434 29-367 (494)
47 KOG4206 Spliceosomal protein s 99.9 3.1E-20 6.7E-25 153.3 16.8 184 243-428 8-220 (221)
48 KOG0105 Alternative splicing f 99.8 2E-18 4.3E-23 136.8 15.6 166 243-418 5-176 (241)
49 KOG0120 Splicing factor U2AF, 99.8 1.9E-18 4.1E-23 161.9 15.4 280 99-427 174-489 (500)
50 KOG1457 RNA binding protein (c 99.8 3E-17 6.5E-22 134.2 15.7 174 244-418 34-274 (284)
51 KOG4206 Spliceosomal protein s 99.8 6.3E-17 1.4E-21 133.9 16.9 202 102-318 11-220 (221)
52 KOG1457 RNA binding protein (c 99.8 2.7E-17 5.9E-22 134.4 14.3 210 96-307 30-273 (284)
53 KOG0105 Alternative splicing f 99.7 2.5E-16 5.3E-21 125.0 15.5 168 101-308 7-176 (241)
54 KOG0120 Splicing factor U2AF, 99.7 8.5E-17 1.8E-21 150.9 15.0 278 2-321 172-493 (500)
55 KOG0106 Alternative splicing f 99.7 3.6E-17 7.7E-22 137.0 8.4 164 246-425 3-166 (216)
56 PLN03134 glycine-rich RNA-bind 99.7 2.3E-16 5E-21 127.4 11.3 81 353-433 33-117 (144)
57 KOG4205 RNA-binding protein mu 99.7 2.6E-16 5.7E-21 140.8 12.4 163 4-180 5-178 (311)
58 KOG4211 Splicing factor hnRNP- 99.7 7.5E-15 1.6E-19 134.2 21.7 262 97-418 7-346 (510)
59 KOG4205 RNA-binding protein mu 99.7 1.8E-16 4E-21 141.8 10.9 168 243-435 5-181 (311)
60 KOG1548 Transcription elongati 99.7 1.2E-15 2.6E-20 133.1 15.2 182 245-429 135-351 (382)
61 PLN03134 glycine-rich RNA-bind 99.6 1.2E-15 2.5E-20 123.3 9.7 77 4-82 33-115 (144)
62 KOG4307 RNA binding protein RB 99.6 3.8E-14 8.1E-19 134.1 19.5 72 355-426 868-943 (944)
63 KOG4212 RNA-binding protein hn 99.6 5.9E-15 1.3E-19 132.3 12.4 232 103-426 47-290 (608)
64 PF00076 RRM_1: RNA recognitio 99.6 4.2E-15 9.2E-20 105.6 9.3 67 357-423 1-70 (70)
65 KOG0125 Ataxin 2-binding prote 99.5 9.5E-15 2.1E-19 126.6 7.4 76 355-430 97-174 (376)
66 PF00076 RRM_1: RNA recognitio 99.5 1.4E-14 3.1E-19 102.8 7.0 65 8-74 1-70 (70)
67 PLN03120 nucleic acid binding 99.5 3.5E-14 7.6E-19 122.4 10.3 75 354-429 4-79 (260)
68 KOG0122 Translation initiation 99.5 5.6E-14 1.2E-18 117.0 10.9 79 353-431 188-270 (270)
69 KOG1548 Transcription elongati 99.5 6.2E-13 1.3E-17 116.3 16.4 192 101-320 135-352 (382)
70 PF14259 RRM_6: RNA recognitio 99.5 7.6E-14 1.6E-18 98.9 8.9 67 357-423 1-70 (70)
71 KOG0106 Alternative splicing f 99.5 2.4E-14 5.2E-19 120.1 7.3 155 6-168 2-163 (216)
72 PF14259 RRM_6: RNA recognitio 99.5 9.9E-14 2.1E-18 98.3 7.9 65 8-74 1-70 (70)
73 PLN03213 repressor of silencin 99.5 9.4E-14 2E-18 126.6 9.0 77 354-430 10-88 (759)
74 KOG0107 Alternative splicing f 99.5 1.2E-13 2.6E-18 109.2 8.3 79 243-322 9-87 (195)
75 KOG0114 Predicted RNA-binding 99.5 2.3E-13 4.9E-18 97.6 8.6 77 354-430 18-95 (124)
76 KOG1365 RNA-binding protein Fu 99.5 3.8E-13 8.3E-18 118.9 11.5 276 6-318 61-360 (508)
77 PLN03120 nucleic acid binding 99.5 2E-13 4.2E-18 117.8 8.9 73 5-80 4-79 (260)
78 KOG0107 Alternative splicing f 99.5 2.1E-13 4.6E-18 107.8 7.8 77 354-431 10-86 (195)
79 PF13893 RRM_5: RNA recognitio 99.4 3.6E-13 7.8E-18 90.5 7.5 56 371-427 1-56 (56)
80 KOG0114 Predicted RNA-binding 99.4 1E-12 2.2E-17 94.3 9.8 76 243-319 17-94 (124)
81 KOG0122 Translation initiation 99.4 3.1E-12 6.7E-17 106.8 13.4 78 242-320 187-269 (270)
82 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.5E-17 113.8 11.1 81 241-322 93-176 (376)
83 PLN03121 nucleic acid binding 99.4 8.7E-13 1.9E-17 111.8 9.9 74 354-428 5-79 (243)
84 KOG0111 Cyclophilin-type pepti 99.4 1.2E-13 2.5E-18 113.0 4.5 84 354-437 10-97 (298)
85 KOG0121 Nuclear cap-binding pr 99.4 4.1E-13 8.8E-18 100.3 6.4 74 3-78 34-113 (153)
86 smart00362 RRM_2 RNA recogniti 99.4 1.4E-12 3.1E-17 92.7 8.8 70 356-425 1-72 (72)
87 KOG0121 Nuclear cap-binding pr 99.4 7.2E-13 1.6E-17 99.0 6.8 76 352-427 34-113 (153)
88 KOG1365 RNA-binding protein Fu 99.4 3.7E-12 8.1E-17 112.7 12.1 272 100-425 60-357 (508)
89 PLN03121 nucleic acid binding 99.4 1.7E-12 3.6E-17 110.1 9.1 76 1-79 1-79 (243)
90 KOG0149 Predicted RNA-binding 99.4 5.7E-13 1.2E-17 110.8 6.1 74 4-80 11-90 (247)
91 PF13893 RRM_5: RNA recognitio 99.4 3.2E-12 6.9E-17 85.9 8.7 56 262-317 1-56 (56)
92 KOG0111 Cyclophilin-type pepti 99.4 1E-12 2.3E-17 107.5 6.8 84 1-86 6-95 (298)
93 smart00360 RRM RNA recognition 99.4 4.1E-12 8.9E-17 90.0 8.2 67 359-425 1-71 (71)
94 smart00362 RRM_2 RNA recogniti 99.3 3.8E-12 8.3E-17 90.5 7.7 67 7-75 1-71 (72)
95 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.5E-16 113.1 13.6 164 244-414 115-289 (306)
96 cd00590 RRM RRM (RNA recogniti 99.3 1.1E-11 2.3E-16 88.6 9.6 71 356-426 1-74 (74)
97 KOG4207 Predicted splicing fac 99.3 1.9E-12 4.1E-17 105.1 5.6 76 355-430 14-93 (256)
98 COG0724 RNA-binding proteins ( 99.3 3.2E-11 7E-16 111.1 12.9 127 5-133 115-258 (306)
99 KOG0126 Predicted RNA-binding 99.3 4.6E-13 9.9E-18 106.4 0.2 73 354-426 35-111 (219)
100 KOG4660 Protein Mei2, essentia 99.3 1.8E-11 3.9E-16 114.2 10.5 173 102-319 77-249 (549)
101 KOG0149 Predicted RNA-binding 99.3 6.2E-12 1.3E-16 104.7 6.7 72 355-427 13-88 (247)
102 PLN03213 repressor of silencin 99.3 1.9E-11 4.1E-16 111.8 9.7 77 245-322 11-90 (759)
103 KOG0130 RNA-binding protein RB 99.3 1.2E-11 2.6E-16 93.3 6.3 76 353-428 71-150 (170)
104 cd00590 RRM RRM (RNA recogniti 99.3 2.7E-11 5.8E-16 86.6 8.1 69 7-77 1-74 (74)
105 KOG0113 U1 small nuclear ribon 99.3 2.8E-11 6E-16 104.0 9.3 81 353-433 100-184 (335)
106 KOG0130 RNA-binding protein RB 99.2 3.7E-11 8E-16 90.7 7.2 78 242-320 70-152 (170)
107 KOG4307 RNA binding protein RB 99.2 4.3E-10 9.4E-15 107.1 15.0 181 244-427 311-511 (944)
108 KOG4207 Predicted splicing fac 99.2 3E-11 6.6E-16 98.2 6.2 76 245-321 14-94 (256)
109 KOG0415 Predicted peptidyl pro 99.2 2.7E-11 5.9E-16 106.3 6.3 81 350-430 235-319 (479)
110 smart00360 RRM RNA recognition 99.2 5.9E-11 1.3E-15 83.9 6.7 64 10-75 1-70 (71)
111 KOG0126 Predicted RNA-binding 99.2 5E-12 1.1E-16 100.6 0.4 76 244-320 35-115 (219)
112 KOG0132 RNA polymerase II C-te 99.2 6.3E-11 1.4E-15 114.3 7.4 76 4-81 420-495 (894)
113 KOG0108 mRNA cleavage and poly 99.2 8.1E-11 1.7E-15 110.6 7.9 78 355-432 19-100 (435)
114 KOG0113 U1 small nuclear ribon 99.1 1.1E-10 2.3E-15 100.5 7.7 75 3-79 99-179 (335)
115 smart00361 RRM_1 RNA recogniti 99.1 1.4E-10 3.1E-15 81.6 7.1 58 368-425 2-70 (70)
116 KOG0153 Predicted RNA-binding 99.1 3.5E-10 7.7E-15 99.4 8.1 78 2-80 225-302 (377)
117 KOG0128 RNA-binding protein SA 99.0 7.9E-13 1.7E-17 128.6 -11.0 321 5-434 479-819 (881)
118 KOG0132 RNA polymerase II C-te 99.0 5.2E-10 1.1E-14 108.1 8.1 79 354-434 421-499 (894)
119 KOG0108 mRNA cleavage and poly 99.0 5.3E-10 1.2E-14 105.1 7.8 77 2-80 14-97 (435)
120 KOG0153 Predicted RNA-binding 99.0 7.3E-10 1.6E-14 97.5 7.8 74 354-429 228-302 (377)
121 KOG4660 Protein Mei2, essentia 99.0 5.8E-10 1.3E-14 104.3 5.8 179 241-430 72-250 (549)
122 KOG0112 Large RNA-binding prot 99.0 3.4E-10 7.4E-15 111.1 4.3 158 3-179 370-532 (975)
123 KOG4454 RNA binding protein (R 99.0 1.4E-10 3E-15 95.3 1.2 137 2-163 6-150 (267)
124 smart00361 RRM_1 RNA recogniti 98.9 4.6E-09 9.9E-14 73.9 7.3 56 259-314 2-69 (70)
125 KOG0415 Predicted peptidyl pro 98.9 1.4E-09 3E-14 95.7 5.6 78 1-80 235-318 (479)
126 KOG0112 Large RNA-binding prot 98.9 1.2E-09 2.6E-14 107.4 4.8 159 242-433 370-534 (975)
127 KOG4208 Nucleolar RNA-binding 98.9 5.9E-09 1.3E-13 85.4 7.6 78 353-430 48-130 (214)
128 KOG0129 Predicted RNA-binding 98.9 7.3E-08 1.6E-12 89.7 15.4 161 239-411 254-432 (520)
129 KOG0128 RNA-binding protein SA 98.9 1.3E-10 2.7E-15 113.6 -3.6 225 8-319 574-814 (881)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.7E-08 3.8E-13 94.2 8.7 81 351-431 402-486 (940)
131 KOG0129 Predicted RNA-binding 98.8 1E-07 2.2E-12 88.9 13.5 148 3-157 257-432 (520)
132 KOG4210 Nuclear localization s 98.7 1.8E-08 3.8E-13 90.7 4.7 168 244-431 88-265 (285)
133 KOG4661 Hsp27-ERE-TATA-binding 98.7 7.9E-08 1.7E-12 90.0 8.9 80 241-321 402-486 (940)
134 KOG4208 Nucleolar RNA-binding 98.7 6.6E-08 1.4E-12 79.4 7.0 76 4-81 48-130 (214)
135 KOG0151 Predicted splicing reg 98.7 3.6E-08 7.9E-13 94.6 6.1 78 352-429 172-256 (877)
136 KOG0226 RNA-binding proteins [ 98.6 8.9E-08 1.9E-12 80.9 7.0 159 246-427 98-267 (290)
137 KOG4676 Splicing factor, argin 98.6 4.6E-08 9.9E-13 87.5 5.3 170 246-418 9-214 (479)
138 PF04059 RRM_2: RNA recognitio 98.6 4.2E-07 9.1E-12 67.0 9.4 78 355-432 2-89 (97)
139 KOG4454 RNA binding protein (R 98.6 1.6E-08 3.6E-13 83.3 1.6 132 245-414 10-147 (267)
140 PF11608 Limkain-b1: Limkain b 98.6 3.3E-07 7.2E-12 63.9 7.7 69 355-429 3-76 (90)
141 KOG0116 RasGAP SH3 binding pro 98.6 8.6E-08 1.9E-12 89.8 6.0 69 6-77 289-363 (419)
142 KOG2193 IGF-II mRNA-binding pr 98.6 5.4E-09 1.2E-13 94.2 -2.0 156 246-433 3-160 (584)
143 KOG0533 RRM motif-containing p 98.5 3E-07 6.5E-12 79.6 8.1 78 355-432 84-164 (243)
144 KOG0151 Predicted splicing reg 98.5 2.7E-07 5.8E-12 88.8 7.8 83 240-323 170-260 (877)
145 KOG0116 RasGAP SH3 binding pro 98.4 5.6E-07 1.2E-11 84.4 6.8 76 354-430 288-367 (419)
146 KOG0533 RRM motif-containing p 98.4 2.2E-06 4.8E-11 74.3 8.8 79 243-322 82-164 (243)
147 KOG4210 Nuclear localization s 98.3 9E-07 2E-11 79.7 5.0 164 5-176 88-262 (285)
148 PF11608 Limkain-b1: Limkain b 98.3 7.1E-06 1.5E-10 57.3 8.1 69 246-320 4-77 (90)
149 KOG4209 Splicing factor RNPS1, 98.3 1.4E-06 3.1E-11 75.8 5.8 76 354-430 101-180 (231)
150 PF08777 RRM_3: RNA binding mo 98.3 2.4E-06 5.3E-11 64.7 6.3 70 355-426 2-76 (105)
151 KOG4676 Splicing factor, argin 98.2 5.1E-07 1.1E-11 80.9 1.8 188 102-308 9-214 (479)
152 PF04059 RRM_2: RNA recognitio 98.2 7.7E-06 1.7E-10 60.4 7.5 76 6-81 2-87 (97)
153 PF08777 RRM_3: RNA binding mo 98.2 5.5E-06 1.2E-10 62.7 6.6 71 6-76 2-75 (105)
154 KOG0226 RNA-binding proteins [ 98.1 2.3E-06 5E-11 72.5 4.1 141 23-173 117-267 (290)
155 KOG2193 IGF-II mRNA-binding pr 98.1 4.5E-07 9.8E-12 82.1 -1.0 151 7-175 3-154 (584)
156 PF14605 Nup35_RRM_2: Nup53/35 98.0 8.9E-06 1.9E-10 53.1 4.1 53 5-58 1-53 (53)
157 KOG4209 Splicing factor RNPS1, 97.9 2.3E-05 4.9E-10 68.3 5.5 76 243-320 100-180 (231)
158 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.4E-05 1.8E-09 48.5 5.7 52 245-299 2-53 (53)
159 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00017 3.8E-09 53.6 7.5 70 245-317 7-89 (100)
160 COG5175 MOT2 Transcriptional r 97.6 8.6E-05 1.9E-09 65.6 5.2 74 246-320 116-203 (480)
161 COG5175 MOT2 Transcriptional r 97.6 0.00017 3.8E-09 63.8 6.8 78 355-432 115-205 (480)
162 KOG0115 RNA-binding protein p5 97.6 0.0002 4.4E-09 61.2 6.5 90 293-417 5-97 (275)
163 KOG2202 U2 snRNP splicing fact 97.6 3.9E-05 8.4E-10 65.6 2.2 62 369-430 83-148 (260)
164 KOG3152 TBP-binding protein, a 97.5 5.1E-05 1.1E-09 64.7 2.4 68 354-421 74-157 (278)
165 KOG1855 Predicted RNA-binding 97.5 6.2E-05 1.3E-09 68.9 2.7 61 4-64 230-309 (484)
166 KOG1995 Conserved Zn-finger pr 97.5 0.00011 2.3E-09 66.1 3.7 78 354-431 66-155 (351)
167 KOG1996 mRNA splicing factor [ 97.4 0.00039 8.4E-09 60.5 6.5 78 352-429 279-366 (378)
168 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00088 1.9E-08 49.9 7.2 71 355-427 7-89 (100)
169 KOG0115 RNA-binding protein p5 97.3 0.0027 5.9E-08 54.5 10.5 87 54-163 7-97 (275)
170 PF08952 DUF1866: Domain of un 97.3 0.0018 3.8E-08 51.3 8.6 58 261-322 52-109 (146)
171 KOG3152 TBP-binding protein, a 97.3 0.00013 2.9E-09 62.2 1.9 66 5-72 74-157 (278)
172 PF08952 DUF1866: Domain of un 97.2 0.0021 4.5E-08 50.9 8.1 78 1-83 23-109 (146)
173 KOG2314 Translation initiation 97.2 0.0011 2.3E-08 63.1 7.5 72 354-425 58-139 (698)
174 PF08675 RNA_bind: RNA binding 97.2 0.002 4.2E-08 45.3 6.5 55 6-63 10-64 (87)
175 KOG1855 Predicted RNA-binding 97.2 0.00029 6.4E-09 64.6 3.1 67 352-418 229-312 (484)
176 KOG2202 U2 snRNP splicing fact 97.1 0.00033 7.1E-09 60.1 2.3 61 261-321 84-149 (260)
177 KOG1996 mRNA splicing factor [ 97.0 0.0017 3.7E-08 56.6 6.4 61 259-319 300-366 (378)
178 PF10309 DUF2414: Protein of u 97.0 0.0037 8E-08 41.7 6.4 54 355-412 6-62 (62)
179 PF08675 RNA_bind: RNA binding 96.8 0.0066 1.4E-07 42.7 6.7 54 355-413 10-63 (87)
180 KOG2314 Translation initiation 96.7 0.0054 1.2E-07 58.5 7.6 70 245-316 59-140 (698)
181 KOG2416 Acinus (induces apopto 96.6 0.0013 2.8E-08 62.9 2.9 79 3-81 442-522 (718)
182 KOG2416 Acinus (induces apopto 96.6 0.002 4.3E-08 61.7 3.9 79 351-431 441-523 (718)
183 KOG4285 Mitotic phosphoprotein 96.6 0.012 2.7E-07 51.7 8.1 64 244-311 197-260 (350)
184 KOG1995 Conserved Zn-finger pr 96.5 0.003 6.5E-08 57.1 4.1 79 242-321 64-155 (351)
185 PF10309 DUF2414: Protein of u 96.5 0.018 3.9E-07 38.5 6.7 53 246-302 7-62 (62)
186 PF15023 DUF4523: Protein of u 96.4 0.02 4.4E-07 44.7 7.3 74 1-78 82-159 (166)
187 PF15023 DUF4523: Protein of u 96.3 0.03 6.4E-07 43.8 7.8 75 351-429 83-161 (166)
188 KOG2591 c-Mpl binding protein, 95.8 0.017 3.7E-07 55.2 5.4 71 5-76 175-247 (684)
189 PF04847 Calcipressin: Calcipr 95.5 0.038 8.3E-07 46.4 6.0 64 367-432 8-73 (184)
190 KOG2591 c-Mpl binding protein, 95.4 0.048 1E-06 52.2 7.1 67 354-423 175-245 (684)
191 KOG4574 RNA-binding protein (c 95.4 0.012 2.5E-07 59.0 3.0 72 358-431 302-375 (1007)
192 PF07576 BRAP2: BRCA1-associat 95.1 0.21 4.6E-06 38.1 8.4 64 246-309 14-81 (110)
193 KOG4574 RNA-binding protein (c 95.0 0.014 3E-07 58.5 2.2 81 7-87 300-380 (1007)
194 KOG2068 MOT2 transcription fac 95.0 0.01 2.2E-07 53.4 1.1 78 355-432 78-165 (327)
195 PF04847 Calcipressin: Calcipr 95.0 0.082 1.8E-06 44.5 6.4 62 18-81 8-71 (184)
196 KOG4849 mRNA cleavage factor I 94.8 0.022 4.7E-07 51.1 2.7 69 6-76 81-157 (498)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.034 7.5E-07 46.6 3.6 60 5-64 7-78 (176)
198 PF07576 BRAP2: BRCA1-associat 94.6 0.24 5.3E-06 37.7 7.5 61 5-65 13-78 (110)
199 KOG0804 Cytoplasmic Zn-finger 94.2 0.1 2.3E-06 48.8 5.8 63 3-65 72-139 (493)
200 PF10567 Nab6_mRNP_bdg: RNA-re 94.2 2.5 5.4E-05 37.7 13.8 179 244-429 15-231 (309)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 93.8 0.17 3.7E-06 42.4 5.9 78 355-432 8-100 (176)
202 KOG4285 Mitotic phosphoprotein 93.4 0.3 6.6E-06 43.3 6.8 65 354-422 197-261 (350)
203 PF11767 SET_assoc: Histone ly 92.8 0.67 1.4E-05 31.6 6.4 56 365-425 11-66 (66)
204 KOG0804 Cytoplasmic Zn-finger 92.4 0.44 9.5E-06 44.8 6.8 65 244-309 74-142 (493)
205 PF03880 DbpA: DbpA RNA bindin 92.4 0.94 2E-05 31.8 7.2 59 255-317 11-74 (74)
206 KOG2253 U1 snRNP complex, subu 92.4 0.18 4E-06 49.6 4.6 167 242-427 38-211 (668)
207 KOG2068 MOT2 transcription fac 91.8 0.068 1.5E-06 48.2 0.9 76 246-321 79-164 (327)
208 KOG2135 Proteins containing th 91.6 0.13 2.8E-06 48.5 2.5 75 245-321 373-447 (526)
209 PF07292 NID: Nmi/IFP 35 domai 91.6 0.27 5.8E-06 35.6 3.6 73 44-121 1-73 (88)
210 KOG4849 mRNA cleavage factor I 91.5 0.28 6.1E-06 44.3 4.4 76 242-318 78-161 (498)
211 PF03880 DbpA: DbpA RNA bindin 91.5 0.97 2.1E-05 31.7 6.4 59 364-427 11-74 (74)
212 PF10567 Nab6_mRNP_bdg: RNA-re 91.4 2.9 6.3E-05 37.3 10.3 154 4-161 14-214 (309)
213 KOG4019 Calcineurin-mediated s 91.1 0.25 5.4E-06 40.5 3.3 81 355-437 11-97 (193)
214 KOG2253 U1 snRNP complex, subu 90.8 0.16 3.4E-06 50.0 2.3 72 350-426 36-107 (668)
215 KOG2318 Uncharacterized conser 90.4 1.2 2.6E-05 43.4 7.6 76 352-427 172-305 (650)
216 KOG2135 Proteins containing th 90.2 0.15 3.3E-06 48.0 1.6 73 6-81 373-446 (526)
217 PF07292 NID: Nmi/IFP 35 domai 89.6 0.91 2E-05 32.9 4.9 72 285-376 1-74 (88)
218 KOG2318 Uncharacterized conser 89.3 1.9 4.1E-05 42.1 8.1 77 241-317 171-305 (650)
219 PF11767 SET_assoc: Histone ly 86.4 5.7 0.00012 27.1 6.9 55 256-314 11-65 (66)
220 PF14111 DUF4283: Domain of un 72.0 3.4 7.3E-05 33.7 2.6 108 16-133 28-138 (153)
221 PF14111 DUF4283: Domain of un 72.0 4.4 9.6E-05 32.9 3.3 110 257-389 29-140 (153)
222 KOG4019 Calcineurin-mediated s 71.1 4.2 9.2E-05 33.6 2.8 74 7-82 12-91 (193)
223 KOG2891 Surface glycoprotein [ 67.7 1.4 3E-05 38.6 -0.6 77 355-431 150-269 (445)
224 KOG4483 Uncharacterized conser 64.0 11 0.00025 35.1 4.4 54 6-60 392-446 (528)
225 KOG4483 Uncharacterized conser 61.8 16 0.00034 34.2 4.9 55 354-411 391-446 (528)
226 PF03468 XS: XS domain; Inter 61.4 11 0.00023 29.2 3.3 52 355-406 9-70 (116)
227 PF14893 PNMA: PNMA 58.3 6.8 0.00015 36.4 2.0 44 4-50 17-71 (331)
228 PF03468 XS: XS domain; Inter 55.4 11 0.00025 29.0 2.6 53 6-59 9-75 (116)
229 KOG4410 5-formyltetrahydrofola 54.6 18 0.00039 32.2 3.8 48 245-293 331-378 (396)
230 KOG4410 5-formyltetrahydrofola 54.4 16 0.00034 32.5 3.5 49 6-54 331-380 (396)
231 PF15513 DUF4651: Domain of un 54.2 45 0.00097 22.3 4.8 19 368-386 8-26 (62)
232 KOG4365 Uncharacterized conser 53.6 2.2 4.8E-05 40.1 -1.9 76 357-433 6-85 (572)
233 PF02714 DUF221: Domain of unk 46.7 30 0.00065 32.3 4.5 57 44-123 1-57 (325)
234 PF15407 Spo7_2_N: Sporulation 44.2 8.5 0.00019 26.3 0.3 19 4-22 26-44 (67)
235 KOG2891 Surface glycoprotein [ 43.8 14 0.00031 32.5 1.7 35 4-38 148-194 (445)
236 PRK14548 50S ribosomal protein 42.6 1.1E+02 0.0024 22.1 5.7 52 361-412 27-81 (84)
237 COG5638 Uncharacterized conser 42.2 1E+02 0.0022 29.2 6.8 75 352-426 144-294 (622)
238 PRK14548 50S ribosomal protein 38.4 73 0.0016 23.0 4.3 49 12-60 27-80 (84)
239 KOG4008 rRNA processing protei 34.4 33 0.00071 29.8 2.3 35 352-386 38-72 (261)
240 PF11823 DUF3343: Protein of u 33.3 59 0.0013 22.5 3.2 28 393-420 2-29 (73)
241 PF11061 DUF2862: Protein of u 32.7 99 0.0021 20.9 3.9 32 20-51 18-52 (64)
242 KOG1295 Nonsense-mediated deca 32.4 51 0.0011 30.9 3.4 60 5-64 7-75 (376)
243 KOG4008 rRNA processing protei 31.2 29 0.00063 30.1 1.5 32 1-32 36-67 (261)
244 KOG2295 C2H2 Zn-finger protein 29.3 13 0.00028 36.4 -1.0 64 244-308 231-299 (648)
245 PF02714 DUF221: Domain of unk 28.5 69 0.0015 29.8 3.8 34 285-320 1-34 (325)
246 PF08544 GHMP_kinases_C: GHMP 26.4 2.3E+02 0.0049 19.7 5.5 44 369-413 37-80 (85)
247 PF08156 NOP5NT: NOP5NT (NUC12 26.3 21 0.00046 24.4 -0.1 39 369-413 27-65 (67)
248 PF12829 Mhr1: Transcriptional 25.5 1.7E+02 0.0037 21.5 4.4 51 12-62 19-72 (91)
249 KOG4213 RNA-binding protein La 25.0 80 0.0017 26.3 2.9 53 355-411 112-169 (205)
250 PF03439 Spt5-NGN: Early trans 24.4 1.3E+02 0.0029 21.5 3.8 36 271-306 33-68 (84)
251 cd04908 ACT_Bt0572_1 N-termina 24.3 2.2E+02 0.0048 18.9 6.4 44 367-410 14-58 (66)
252 PF08002 DUF1697: Protein of u 24.0 1.3E+02 0.0028 24.0 4.1 42 5-47 3-48 (137)
253 PF00403 HMA: Heavy-metal-asso 23.4 2.2E+02 0.0048 18.5 6.4 53 7-59 1-57 (62)
254 KOG2295 C2H2 Zn-finger protein 22.5 19 0.00041 35.3 -1.2 67 352-418 229-299 (648)
255 PF03439 Spt5-NGN: Early trans 22.3 1.2E+02 0.0027 21.6 3.3 34 126-160 33-66 (84)
256 cd04889 ACT_PDH-BS-like C-term 22.3 2.2E+02 0.0047 18.0 5.7 42 368-409 12-55 (56)
257 PRK10629 EnvZ/OmpR regulon mod 22.2 3.9E+02 0.0085 21.0 8.0 75 350-428 31-109 (127)
258 PRK10113 cell division modulat 22.0 1.1E+02 0.0023 20.7 2.5 30 33-62 34-73 (80)
259 PF03544 TonB_C: Gram-negative 20.9 1.3E+02 0.0027 20.8 3.1 47 27-77 25-71 (79)
260 PF14893 PNMA: PNMA 20.5 99 0.0021 28.9 3.0 49 354-402 18-72 (331)
No 1
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.2e-67 Score=510.68 Aligned_cols=425 Identities=36% Similarity=0.622 Sum_probs=337.2
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccc
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL 83 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~ 83 (437)
||++|||+|||++++|++|+++|++||+|.+|.++++++||||+|.+.++|++|++.++..+..++|++|+|.|+.+++.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 89999999999999999999999999999999999999999999999999999999876556689999999999987654
Q ss_pred cccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCC-ccEEEEEecChhHHHHHHHHcCCCC
Q 013749 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA-GFQALIQYQLRPSAVVARSSLQGRN 162 (437)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~-g~~afV~f~~~~~A~~A~~~l~~~~ 162 (437)
......+ .....+..+++|+|.||++.+++++|+++|++||.|.+|.++.+.. |+ |||+|.+.++|.+|++.|||..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~-afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 81 KRDGNSD-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQ-ALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccCCCCc-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceE-EEEEECCHHHHHHHHHHhcCCc
Confidence 4332111 1122356788899999999999999999999999999998875544 55 9999999999999999999999
Q ss_pred CCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCC---------C----------CCCCCCCCC-CCCCcc---
Q 013749 163 IYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG---------R----------PSQSGYSEA-GVAFPQ--- 219 (437)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----------~~~~~~~~~-~~~~~~--- 219 (437)
+++++++|++.|+++..++++.++++++||+.+.++..... . .+..+++.. |...+.
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGG 238 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccc
Confidence 99988999999999999999999999999999988621100 0 011122211 100000
Q ss_pred --cchh----hhhhhhcC-CCCC---C--CCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEE
Q 013749 220 --MANA----AAIAAAFG-GGLP---P--GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALV 287 (437)
Q Consensus 220 --~~~~----~~~~~~~~-~~~~---~--~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV 287 (437)
+++. .....+.+ ...+ + .....+++++|||+||+++.+++++|+++|+.||.|.+|+++.+++|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV 318 (481)
T TIGR01649 239 DRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALI 318 (481)
T ss_pred ccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEE
Confidence 0000 00000000 0000 0 011235678999999996349999999999999999999999988899999
Q ss_pred EeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCC---------CCccccccCCCCCCCcchhccccccCCCcceEE
Q 013749 288 QMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358 (437)
Q Consensus 288 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 358 (437)
+|.+.++|..|+..|||..+.|+.|+|.+++....... ....+|......|+..+..++.....+|+.+||
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~ 398 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLH 398 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEE
Confidence 99999999999999999999999999999976644211 012455555556665554444334567899999
Q ss_pred ecCCCCCCCHHHHHHhhhccCC--eeEEEEEeeC--CceEEEEEecCHHHHHHHHHHhCCCccCCcE------EEEEecc
Q 013749 359 LSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEMN--GKKQALVLFETEEQATEALVCKHASSLGGSI------IRISFSQ 428 (437)
Q Consensus 359 v~nlp~~~t~~~l~~~f~~~G~--v~~~~i~~~~--~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~------l~v~~s~ 428 (437)
|+|||.++++++|+++|++||. |..+++++.+ .+++|||+|.+.++|.+|+..|||+.|.|+. |+|+||+
T Consensus 399 v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 399 LSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred EecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 9999999999999999999998 8888887543 2689999999999999999999999999885 9999998
Q ss_pred Cc
Q 013749 429 LQ 430 (437)
Q Consensus 429 ~~ 430 (437)
++
T Consensus 479 ~~ 480 (481)
T TIGR01649 479 SR 480 (481)
T ss_pred CC
Confidence 76
No 2
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=1.5e-62 Score=430.46 Aligned_cols=425 Identities=44% Similarity=0.720 Sum_probs=368.4
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
|..||++|++|+||++++|+||..++.+||+|+++..++++..||++|.+.++|...+.+....++.+.|++|.|+|+++
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~ 103 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNH 103 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhH
Confidence 46799999999999999999999999999999999999999999999999999999999988889999999999999998
Q ss_pred ccccccccCCCC---------------------------CCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE
Q 013749 81 QELTTMEQNAQG---------------------------RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (437)
Q Consensus 81 ~~~~~~~~~~~~---------------------------~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~ 133 (437)
.+...+..+.+. ....+..+++++|.|+-+.++-|-|.++|++||.|.+|..+
T Consensus 104 ~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF 183 (492)
T KOG1190|consen 104 SELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF 183 (492)
T ss_pred HHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEE
Confidence 777665544311 22346689999999999999999999999999999999999
Q ss_pred eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCC----C
Q 013749 134 QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS----G 209 (437)
Q Consensus 134 ~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 209 (437)
.++.||+|+|+|.+++.|+.|...|+|+.|++++|+|++.|+++..++++++++++|||++|.+|..+.++...+ .
T Consensus 184 ~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa 263 (492)
T KOG1190|consen 184 TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAA 263 (492)
T ss_pred ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998854332211 1
Q ss_pred CCCC---CCCCcccchhhhhhhhc-CCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeE
Q 013749 210 YSEA---GVAFPQMANAAAIAAAF-GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA 285 (437)
Q Consensus 210 ~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~ 285 (437)
+++. +.....++.....+... +...+++ .++.|.|+||-++.+|.+-|..+|+-||+|.+|+|+.+++..|
T Consensus 264 ~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-----~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~A 338 (492)
T KOG1190|consen 264 FGSVPAVHGAPLAIPSGAAGANAADGKIESPS-----ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNA 338 (492)
T ss_pred ccccccccCCcccCCccchhhcccccccccCC-----CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcce
Confidence 1110 01111122222222111 2222222 2579999999999999999999999999999999999988999
Q ss_pred EEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCC-------CCCCCccccccCCCCCCCcchhccccccCCCcceEE
Q 013749 286 LVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 358 (437)
Q Consensus 286 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 358 (437)
+|+|.+...|+.|+..|+|..+.|++|+|.+++.... ...+..++|..+++.||..++++|++..+||+.+||
T Consensus 339 LIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlH 418 (492)
T KOG1190|consen 339 LIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLH 418 (492)
T ss_pred eeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhhee
Confidence 9999999999999999999999999999999997766 234568899999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC-CcEEEEEeccCc
Q 013749 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQLQ 430 (437)
Q Consensus 359 v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~s~~~ 430 (437)
++|+|.+++|++|+..|.+-|...+......+++.+|.+.+.+.|+|..|+..++...++ +..|+|+||++.
T Consensus 419 lsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 419 LSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred eccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 999999999999999999999887776666677899999999999999999999999998 569999999874
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.9e-54 Score=429.66 Aligned_cols=344 Identities=20% Similarity=0.296 Sum_probs=279.5
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
+|||+|||+++||++|+++|++||+|.+|+|++|+ |||||+|.+.++|.+|+..+++. .++|++|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecccc
Confidence 79999999999999999999999999999999763 89999999999999999999988 89999999999765
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE----eeCCccEEEEEecChhHHHHHHH
Q 013749 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQALIQYQLRPSAVVARS 156 (437)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~----~~~~g~~afV~f~~~~~A~~A~~ 156 (437)
...... .....|||+|||.++++++|+++|+.||.|.+|.+. ++++|+ |||+|.+.++|.+|++
T Consensus 80 ~~~~~~-----------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~-afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 80 DPSLRR-----------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGY-GFVHFEKEESAKAAIQ 147 (562)
T ss_pred cccccc-----------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccE-EEEEECCHHHHHHHHH
Confidence 322111 112249999999999999999999999999998775 457888 9999999999999999
Q ss_pred HcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCC
Q 013749 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPP 236 (437)
Q Consensus 157 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (437)
.++|..+.+. .+.+........ +. .
T Consensus 148 ~lng~~~~~~--~i~v~~~~~~~~---------~~---------~----------------------------------- 172 (562)
T TIGR01628 148 KVNGMLLNDK--EVYVGRFIKKHE---------RE---------A----------------------------------- 172 (562)
T ss_pred HhcccEecCc--eEEEeccccccc---------cc---------c-----------------------------------
Confidence 9999888664 344433221000 00 0
Q ss_pred CCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeC----
Q 013749 237 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLF---- 308 (437)
Q Consensus 237 ~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~---- 308 (437)
......++|||+|||. .+|+++|+++|+.||.|.++.+..+. +|+|||+|.+.++|.+|++.|+|..+.
T Consensus 173 --~~~~~~~~l~V~nl~~-~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~ 249 (562)
T TIGR01628 173 --APLKKFTNLYVKNLDP-SVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKE 249 (562)
T ss_pred --ccccCCCeEEEeCCCC-cCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEeccccc
Confidence 0011223799999998 69999999999999999999998754 679999999999999999999999999
Q ss_pred CcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEe
Q 013749 309 GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE 388 (437)
Q Consensus 309 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~ 388 (437)
|+.+.|.++.............+.. ..........+.+|||+|||+.+++++|+++|++||.|.+++++.
T Consensus 250 g~~l~v~~a~~k~er~~~~~~~~~~----------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 250 GKKLYVGRAQKRAEREAELRRKFEE----------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred ceeeEeecccChhhhHHHHHhhHHh----------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 9999999876554321111110000 000001223457899999999999999999999999999999987
Q ss_pred eC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 389 MN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 389 ~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
+. .+|+|||+|.+.++|.+|+..|||+.++|+.|.|.+++.+..
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 63 378999999999999999999999999999999999998754
No 4
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-47 Score=328.93 Aligned_cols=425 Identities=31% Similarity=0.528 Sum_probs=354.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
+.||.+|+|++|-..++|.||.+.++.||+|.-|..+..+..|.|+|++.+.|+++++.....++.+.|+...++||..+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq 107 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQ 107 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999888899999999999999887
Q ss_pred cccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCC
Q 013749 82 ELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161 (437)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~ 161 (437)
.+.++.. .+..+.+++.+.|.|.-+.+|.+-|+.++.+.|+|.+|.++.+ .|.+|.|+|++.+.|++|...|||.
T Consensus 108 ~i~R~g~----es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 108 CIERPGD----ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred hhccCCC----CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccc
Confidence 7766552 2345778888999999999999999999999999999999988 5778999999999999999999999
Q ss_pred CCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCC-CCC-----CCC--------CCCCC-C------CCCccc
Q 013749 162 NIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK-GRP-----SQS--------GYSEA-G------VAFPQM 220 (437)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~--------~~~~~-~------~~~~~~ 220 (437)
.|+.++|+|+++|++++.+++.+++..+|||+.|.++.... .+. .+| .+++. + ..-|..
T Consensus 183 DIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~ 262 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPH 262 (494)
T ss_pred cccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCC
Confidence 99999999999999999999999999999999988754321 111 111 11111 0 001111
Q ss_pred chhh-hhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHH
Q 013749 221 ANAA-AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299 (437)
Q Consensus 221 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~ 299 (437)
+.++ ..........+.+..+..+++.+.|.+|..+.+.-+.|.++|..||.|.+|++++.+.|.|.|++.+....+.|+
T Consensus 263 ~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 263 PPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAV 342 (494)
T ss_pred CCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHH
Confidence 1111 100111111122224567788999999999889999999999999999999999998999999999999999999
Q ss_pred HHhcCceeCCcEEEEEEccCCCC---------CCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHH
Q 013749 300 HFLKGALLFGKRLEVNFSKHPNI---------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE 370 (437)
Q Consensus 300 ~~l~g~~~~g~~l~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~ 370 (437)
..||+..+.|.+|.+..++.... +..+..++|+++..+||.++..-.-....+|+++|+.-|.|..+||+.
T Consensus 343 ~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~ 422 (494)
T KOG1456|consen 343 THLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQ 422 (494)
T ss_pred HHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHH
Confidence 99999999999999999998776 345778999999999999885332225778999999999999999999
Q ss_pred HHHhhhccCCe-eEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCc------EEEEEeccCcc
Q 013749 371 IVSHLEEHGSI-VNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS------IIRISFSQLQS 431 (437)
Q Consensus 371 l~~~f~~~G~v-~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~------~l~v~~s~~~~ 431 (437)
|.++|..-+.- .++++++.+. ..-|.+||++.++|..|+..+|...+++. .|++.||.++.
T Consensus 423 l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 423 LIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred HHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 99999876644 7788886554 23899999999999999999999999864 89999998765
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-43 Score=335.62 Aligned_cols=301 Identities=18% Similarity=0.255 Sum_probs=217.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++.+|||+|||.++||+||+++|++||+|.+|+|+++ +|||||+|.+.++|.+|++.|++. .+.|+.|.|.
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v~ 78 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKVS 78 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEEE
Confidence 36789999999999999999999999999999999976 389999999999999999999998 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSA 151 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A 151 (437)
|+.+..... ....|||+|||..+++++|+++|++||.|..+.+. +.++|+ |||+|.+.++|
T Consensus 79 ~a~~~~~~~-------------~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~A 144 (352)
T TIGR01661 79 YARPSSDSI-------------KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGV-GFIRFDKRDEA 144 (352)
T ss_pred eeccccccc-------------ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcE-EEEEECCHHHH
Confidence 987643211 12249999999999999999999999999887765 345787 99999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCcceeeec-CCcccCccCCCCCCCCCC--------CCC---CCCCCCC-C----
Q 013749 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYN-NERSRDFTNPNLPAEQKG--------RPS---QSGYSEA-G---- 214 (437)
Q Consensus 152 ~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~-~---- 214 (437)
++|++.|+|..+.+...++.+.|+.......... ......+..+........ .+. ...+..+ +
T Consensus 145 ~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
T TIGR01661 145 DRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTA 224 (352)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhh
Confidence 9999999999888877788998886543111100 000000000000000000 000 0000000 0
Q ss_pred --------CCCcccchhhh------hhhhcCC-CCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec
Q 013749 215 --------VAFPQMANAAA------IAAAFGG-GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR 279 (437)
Q Consensus 215 --------~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~ 279 (437)
...+....+.. .....+. ...........+.+|||+|||+ .+++++|+++|++||.|.+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~-~~~e~~L~~~F~~fG~v~~v~i~~ 303 (352)
T TIGR01661 225 VLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSP-DTDETVLWQLFGPFGAVQNVKIIR 303 (352)
T ss_pred hhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHhCCCeEEEEEeE
Confidence 00000000000 0000000 0000011123345799999998 699999999999999999999998
Q ss_pred CC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 280 NK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 280 ~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
+. +|||||+|.+.++|..|+..|||..+.|+.|+|.|....
T Consensus 304 d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 304 DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 65 899999999999999999999999999999999998754
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.4e-42 Score=324.20 Aligned_cols=268 Identities=19% Similarity=0.310 Sum_probs=209.5
Q ss_pred EEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEe
Q 013749 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 101 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
..|||+|||.++++++|+++|+.||+|.+|.+. ++++|| |||+|.+.++|.+|++.|+|..+.+. .|++.|+
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~-afV~f~~~~~A~~Ai~~l~g~~l~g~--~i~v~~a 80 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGY-GFVNYVRPEDAEKAVNSLNGLRLQNK--TIKVSYA 80 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceE-EEEEECcHHHHHHHHhhcccEEECCe--eEEEEee
Confidence 359999999999999999999999999998876 456788 99999999999999999999888774 6677777
Q ss_pred cCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCC
Q 013749 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSD 255 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 255 (437)
++.. + ....++|||+|||.
T Consensus 81 ~~~~-----------~-------------------------------------------------~~~~~~l~v~~l~~- 99 (352)
T TIGR01661 81 RPSS-----------D-------------------------------------------------SIKGANLYVSGLPK- 99 (352)
T ss_pred cccc-----------c-------------------------------------------------ccccceEEECCccc-
Confidence 5210 0 01123799999998
Q ss_pred CCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEccCCCCCCCC-C
Q 013749 256 RIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSKHPNITQGA-D 327 (437)
Q Consensus 256 ~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~~~~~-~ 327 (437)
.+++++|+++|++||.|..+.++.+. +|+|||+|.+.++|..|++.|||..+.| .+|.+.|+......... .
T Consensus 100 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~ 179 (352)
T TIGR01661 100 TMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGL 179 (352)
T ss_pred cCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhc
Confidence 69999999999999999999887753 7899999999999999999999999877 57888888654421000 0
Q ss_pred c---cccccCCC---------------------CCC----------------------------Ccchhccc--------
Q 013749 328 T---HEYMNSNL---------------------NRF----------------------------NRNAAKNY-------- 347 (437)
Q Consensus 328 ~---~~~~~~~~---------------------~~~----------------------------~~~~~~~~-------- 347 (437)
. ..+..... .++ ..+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T TIGR01661 180 LSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAG 259 (352)
T ss_pred CchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccC
Confidence 0 00000000 000 00000000
Q ss_pred ---cccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 013749 348 ---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGS 420 (437)
Q Consensus 348 ---~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~ 420 (437)
.....++.+|||+|||+++++++|+++|++||.|.+++|+.+. .+|||||+|.+.++|.+|+..|||..|.||
T Consensus 260 ~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr 339 (352)
T TIGR01661 260 AQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR 339 (352)
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 0001224579999999999999999999999999999999764 389999999999999999999999999999
Q ss_pred EEEEEeccCccc
Q 013749 421 IIRISFSQLQSI 432 (437)
Q Consensus 421 ~l~v~~s~~~~~ 432 (437)
.|+|+|+..++.
T Consensus 340 ~i~V~~~~~~~~ 351 (352)
T TIGR01661 340 VLQVSFKTNKAY 351 (352)
T ss_pred EEEEEEccCCCC
Confidence 999999988763
No 7
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-41 Score=314.22 Aligned_cols=338 Identities=21% Similarity=0.289 Sum_probs=272.6
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC---CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK---NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~---~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
..|||+ +++||.+|.++|+++|+|+.|++++|- |||||.|.++.+|.+|+..+|.. .+.|++++|.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~--~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFD--VLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCc--ccCCcEEEeehhccCC
Confidence 368999 899999999999999999999999985 99999999999999999999999 9999999999977642
Q ss_pred ccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee---CCccEEEEEecChhHHHHHHHHcC
Q 013749 83 LTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK---SAGFQALIQYQLRPSAVVARSSLQ 159 (437)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~---~~g~~afV~f~~~~~A~~A~~~l~ 159 (437)
.. |||.||+++++...|+++|+.||.|.+|.+... ++|+ ||+|.++++|++|++.+|
T Consensus 77 ~~------------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~--FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 SL------------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY--FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ce------------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee--EEEeCCHHHHHHHHHHhc
Confidence 11 899999999999999999999999999988733 4554 999999999999999999
Q ss_pred CCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCC
Q 013749 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGIT 239 (437)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (437)
|..+.+..+ .+-........ . .+...
T Consensus 137 g~ll~~kki--~vg~~~~~~er---------~--~~~~~----------------------------------------- 162 (369)
T KOG0123|consen 137 GMLLNGKKI--YVGLFERKEER---------E--APLGE----------------------------------------- 162 (369)
T ss_pred CcccCCCee--EEeeccchhhh---------c--ccccc-----------------------------------------
Confidence 988877543 33222111000 0 00000
Q ss_pred CCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 240 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
....-+.+++.|++. ..++++|.++|+.||.|.++.++.+. ++|+||.|.++++|..|+..|+|..+++..+.|.
T Consensus 163 ~~~~~t~v~vk~~~~-~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~ 241 (369)
T KOG0123|consen 163 YKKRFTNVYVKNLEE-DSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVG 241 (369)
T ss_pred hhhhhhhhheecccc-ccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeec
Confidence 001112689999997 69999999999999999999998854 7899999999999999999999999999999998
Q ss_pred EccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee---CCc
Q 013749 316 FSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGK 392 (437)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~ 392 (437)
.+..........- ..+.....+ +....+..+|||+|++..++.+.|+++|+.||.|.+++++.+ +.+
T Consensus 242 ~aqkk~e~~~~l~--------~~~~~~~~~--~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~sk 311 (369)
T KOG0123|consen 242 RAQKKSEREAELK--------RKFEQEFAK--RSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSK 311 (369)
T ss_pred ccccchhhHHHHh--------hhhHhhhhh--ccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCcc
Confidence 7765321111000 000000000 112345678999999999999999999999999999999864 348
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 393 KQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 393 ~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
|+|||+|.+.++|.+|+..+|+..+.++.|.|.+++.+..+
T Consensus 312 G~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 312 GFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred ceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 99999999999999999999999999999999998866655
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4e-40 Score=321.34 Aligned_cols=276 Identities=22% Similarity=0.279 Sum_probs=213.8
Q ss_pred EEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHc--CCCCCCCCCceEEEEEecCCc
Q 013749 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL--QGRNIYDGCCQLDIQFSNLDE 179 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~l~~~~~~~~~ 179 (437)
.|||+|||.++++++|+++|++||.|.++.+.. ++|+ |||+|.+.++|++|++.+ ++..+.| .+|++.|+....
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-~k~~-afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v~~s~~~~ 79 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-GKRQ-ALVEFEDEESAKACVNFATSVPIYIRG--QPAFFNYSTSQE 79 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-CCCE-EEEEeCchHHHHHHHHHhhcCCceEcC--eEEEEEecCCcc
Confidence 399999999999999999999999999998774 5687 999999999999999875 4555544 688999987543
Q ss_pred ceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCH
Q 013749 180 LQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDE 259 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~ 259 (437)
+....+. + .. ....+...+|+|.||+. .+++
T Consensus 80 ~~~~~~~----~--------~~------------------------------------~~~~~~~~~v~v~nl~~-~vt~ 110 (481)
T TIGR01649 80 IKRDGNS----D--------FD------------------------------------SAGPNKVLRVIVENPMY-PITL 110 (481)
T ss_pred cccCCCC----c--------cc------------------------------------CCCCCceEEEEEcCCCC-CCCH
Confidence 2211000 0 00 00011224799999998 7999
Q ss_pred HHHHHHHhccCCeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEccCCCCC---CCCCcccccc
Q 013749 260 DKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSKHPNIT---QGADTHEYMN 333 (437)
Q Consensus 260 ~~l~~~F~~~G~v~~v~i~~~~-~g~~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~~---~~~~~~~~~~ 333 (437)
++|+++|+.||.|.+|.++++. +++|||+|.+.++|.+|++.|||..+.| ..|+|.|++..... ......||++
T Consensus 111 ~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~ 190 (481)
T TIGR01649 111 DVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTN 190 (481)
T ss_pred HHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcC
Confidence 9999999999999999998764 4699999999999999999999999965 48999999875541 1223334443
Q ss_pred CCCC-------------CCCc----------------c-------------------hhcc----------------ccc
Q 013749 334 SNLN-------------RFNR----------------N-------------------AAKN----------------YRY 349 (437)
Q Consensus 334 ~~~~-------------~~~~----------------~-------------------~~~~----------------~~~ 349 (437)
..+. ++.. . ...+ ...
T Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (481)
T TIGR01649 191 PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPA 270 (481)
T ss_pred CCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCC
Confidence 3221 0000 0 0000 001
Q ss_pred cCCCcceEEecCCCC-CCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 350 CCSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
..+++++|||+|||+ .+|+++|+++|+.||.|.+++++.+ .+|+|||+|.+.++|.+|++.|||..|.|+.|+|++++
T Consensus 271 ~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 271 GGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 135778999999998 6999999999999999999999874 47999999999999999999999999999999999997
Q ss_pred Ccc
Q 013749 429 LQS 431 (437)
Q Consensus 429 ~~~ 431 (437)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 764
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.6e-40 Score=316.63 Aligned_cols=294 Identities=21% Similarity=0.240 Sum_probs=225.3
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCccc-CeEEEEEec
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIR-GRNVYVQFS 78 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~-g~~l~v~~s 78 (437)
.++|||+|||++++|++|+++|++||.|.+|+|++| +|||||+|.+.++|++|++.|++. .+. |+.|.|.++
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~--~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNY--EIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCC--eecCCcccccccc
Confidence 379999999999999999999999999999999865 699999999999999999999987 554 777777654
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCc-eeEEEEE------eeCCccEEEEEecChhHH
Q 013749 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF-VEKIVTF------QKSAGFQALIQYQLRPSA 151 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~i~~~------~~~~g~~afV~f~~~~~A 151 (437)
.. ..+|||+|||.++++++|.+.|++++. +.++.+. .+++|| |||+|.+.++|
T Consensus 136 ~~-------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGF-AFVeF~s~edA 195 (578)
T TIGR01648 136 VD-------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGF-AFVEYESHRAA 195 (578)
T ss_pred cc-------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCce-EEEEcCCHHHH
Confidence 21 123999999999999999999999864 3444332 356888 99999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcC
Q 013749 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFG 231 (437)
Q Consensus 152 ~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (437)
..|++.|+...+......|.+.|+.+..-. + .
T Consensus 196 a~AirkL~~gki~l~Gr~I~VdwA~p~~~~---------d---------~------------------------------ 227 (578)
T TIGR01648 196 AMARRKLMPGRIQLWGHVIAVDWAEPEEEV---------D---------E------------------------------ 227 (578)
T ss_pred HHHHHHhhccceEecCceEEEEeecccccc---------c---------c------------------------------
Confidence 999988765443333356788887532100 0 0
Q ss_pred CCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhcc--CCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 013749 232 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY--GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 309 (437)
Q Consensus 232 ~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g 309 (437)
.......+|||+||+. .+++++|+++|+.| |.|.+|++++ +||||+|.+.++|.+|++.|||..|.|
T Consensus 228 -------~~~~~~k~LfVgNL~~-~~tee~L~~~F~~f~~G~I~rV~~~r---gfAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 228 -------DVMAKVKILYVRNLMT-TTTEEIIEKSFSEFKPGKVERVKKIR---DYAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred -------cccccccEEEEeCCCC-CCCHHHHHHHHHhcCCCceEEEEeec---CeEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 0011224899999998 79999999999999 9999998764 599999999999999999999999999
Q ss_pred cEEEEEEccCCCCCCCCCccccccCCCCCCC---cchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCee
Q 013749 310 KRLEVNFSKHPNITQGADTHEYMNSNLNRFN---RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 382 (437)
Q Consensus 310 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 382 (437)
+.|+|.|+++....... .+......+.. .....-.....+++.++++.|+++..+++-++++|..+|.|.
T Consensus 297 r~I~V~~Akp~~~~~~~---~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 297 SEIEVTLAKPVDKKSYV---RYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred EEEEEEEccCCCccccc---ccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 99999999875432100 00000000000 000000112345678999999999999999999999999874
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=269.71 Aligned_cols=284 Identities=21% Similarity=0.328 Sum_probs=219.5
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
....|.|..||..+|++|||.+|...|+|++|+++||| ||+||.|.+++||.+|++.+|+- .+..+.|+|.|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGL--rLQ~KTIKVSy 117 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGL--RLQNKTIKVSY 117 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcce--eeccceEEEEe
Confidence 44678899999999999999999999999999999997 99999999999999999999987 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEE-----EeeCCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVT-----FQKSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~-----~~~~~g~~afV~f~~~~~A~ 152 (437)
+.+........+ +||.+||..+|..||+++|++||.|..-.+ .+-++|. +||.|...++|.
T Consensus 118 ARPSs~~Ik~aN-------------LYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGV-gFiRFDKr~EAe 183 (360)
T KOG0145|consen 118 ARPSSDSIKDAN-------------LYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGV-GFIRFDKRIEAE 183 (360)
T ss_pred ccCChhhhcccc-------------eEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecce-eEEEecchhHHH
Confidence 998766555555 999999999999999999999999865332 3778897 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCC------------------
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG------------------ 214 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 214 (437)
.|++.|||+.-.+-.-++.|+++....-.... .-.+.-|..| ...++++-
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~t~~-a~ls~ly~sp-----------~rr~~Gp~hh~~~r~r~~~~~~~~~~ 251 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQKTNQ-ALLSQLYQSP-----------ARRYGGPMHHQAQRFRLDNLLNPHAA 251 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCcccccch-hhhHHhhcCc-----------cccCCCcccchhhhhccccccchhhh
Confidence 99999999988887788888888643111000 0000111111 11111110
Q ss_pred -CCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEE
Q 013749 215 -VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQ 288 (437)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~ 288 (437)
..++++....+.. -.+...|. .....-+|||.||.+| .+|.-|.++|++||.|..|++++|- +||+||.
T Consensus 252 ~~rfsP~~~d~m~~-l~~~~lp~---~~~~g~ciFvYNLspd-~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVt 326 (360)
T KOG0145|consen 252 QARFSPMTIDGMSG-LAGVNLPG---GPGGGWCIFVYNLSPD-ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 326 (360)
T ss_pred hccCCCccccccce-eeeeccCC---CCCCeeEEEEEecCCC-chHhHHHHHhCcccceeeEEEEecCCcccccceeEEE
Confidence 0011110000000 00011111 1223459999999995 9999999999999999999999865 8999999
Q ss_pred eCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 289 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 289 f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
+.+.++|..|+..|||..++++.|.|.|...+
T Consensus 327 MtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 327 MTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999997643
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.3e-38 Score=307.18 Aligned_cols=278 Identities=20% Similarity=0.260 Sum_probs=218.9
Q ss_pred ChhHHHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeE
Q 013749 50 DVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK 129 (437)
Q Consensus 50 ~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~ 129 (437)
-.++|.+|+..++++ .+........|..+..... ...+.....|||+|||.++++++|+++|++||.|.+
T Consensus 18 ~~~~a~~a~~~~~gy--~~~~~~g~r~~g~Pp~~~~--------~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~ 87 (578)
T TIGR01648 18 PDEAALKALLERTGY--TLVQENGQRKYGGPPPGWS--------GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYE 87 (578)
T ss_pred ccHHHHHHHHHhhCc--cccccCCcccCCCCCCccc--------CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEE
Confidence 368899999988888 5555555556654322110 111222345999999999999999999999999999
Q ss_pred EEEE----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCC
Q 013749 130 IVTF----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205 (437)
Q Consensus 130 i~~~----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
+.+. ++++|| |||+|.+.++|++|++.|++..+..+ ..+.+.++
T Consensus 88 vrl~~D~sG~sRGf-aFV~F~~~e~A~~Ai~~lng~~i~~G-r~l~V~~S------------------------------ 135 (578)
T TIGR01648 88 LRLMMDFSGQNRGY-AFVTFCGKEEAKEAVKLLNNYEIRPG-RLLGVCIS------------------------------ 135 (578)
T ss_pred EEEEECCCCCccce-EEEEeCCHHHHHHHHHHcCCCeecCC-cccccccc------------------------------
Confidence 8775 578898 99999999999999999999777532 11222211
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCC-eEEEEEecC----
Q 013749 206 SQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN-IIRIKLLRN---- 280 (437)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~v~i~~~---- 280 (437)
...++|||+|||. .+++++|.++|++++. +..+.+...
T Consensus 136 ------------------------------------~~~~rLFVgNLP~-~~TeeeL~eeFskv~egvv~vIv~~~~~~k 178 (578)
T TIGR01648 136 ------------------------------------VDNCRLFVGGIPK-NKKREEILEEFSKVTEGVVDVIVYHSAADK 178 (578)
T ss_pred ------------------------------------ccCceeEeecCCc-chhhHHHHHHhhcccCCceEEEEecccccc
Confidence 1124899999998 6999999999999974 555545421
Q ss_pred --CCCeEEEEeCCHHHHHHHHHHhcC--ceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcce
Q 013749 281 --KPDHALVQMGDGFQAELAVHFLKG--ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 356 (437)
Q Consensus 281 --~~g~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (437)
.+|||||+|.++++|..|++.|+. ..+.|+.|.|.|+.+...... ......++
T Consensus 179 gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-----------------------~~~~~~k~ 235 (578)
T TIGR01648 179 KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-----------------------DVMAKVKI 235 (578)
T ss_pred CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-----------------------cccccccE
Confidence 278999999999999999998864 457899999999875531100 01122478
Q ss_pred EEecCCCCCCCHHHHHHhhhcc--CCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 357 IHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 357 l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
|||+|||.++++++|+++|++| |.|.+|+++ ++||||+|.+.++|++|++.|||..|.|+.|+|+||+++..+
T Consensus 236 LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 236 LYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999999 999999886 579999999999999999999999999999999999987544
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7e-38 Score=278.72 Aligned_cols=284 Identities=18% Similarity=0.236 Sum_probs=224.6
Q ss_pred EEecChhHHHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCC
Q 013749 46 LQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHG 125 (437)
Q Consensus 46 V~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G 125 (437)
-...+.++|.+||..-.++ .|.+.-...+....+...+. ..+..-.-|||+.||.++.|++|.-+|.+.|
T Consensus 39 ~~~~~~eaal~al~E~tgy-------~l~ve~gqrk~ggPpP~weg---~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG 108 (506)
T KOG0117|consen 39 AGVQSEEAALKALLERTGY-------TLVVENGQRKYGGPPPGWEG---PPPPRGCEVFVGKIPRDVFEDELVPLFEKIG 108 (506)
T ss_pred cccccHHHHHHHHHHhcCc-------eEEEeccccccCCCCCcccC---CCCCCCceEEecCCCccccchhhHHHHHhcc
Confidence 3344578888888753333 44555433322211111111 1122223399999999999999999999999
Q ss_pred ceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCC
Q 013749 126 FVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE 200 (437)
Q Consensus 126 ~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (437)
+|.++.++ +.++|| |||.|.+.++|++|++.||+..|..+ ..|.+..+-
T Consensus 109 ~I~elRLMmD~~sG~nRGY-AFVtf~~Ke~Aq~Aik~lnn~Eir~G-K~igvc~Sv------------------------ 162 (506)
T KOG0117|consen 109 KIYELRLMMDPFSGDNRGY-AFVTFCTKEEAQEAIKELNNYEIRPG-KLLGVCVSV------------------------ 162 (506)
T ss_pred ceeeEEEeecccCCCCcce-EEEEeecHHHHHHHHHHhhCccccCC-CEeEEEEee------------------------
Confidence 99998876 678998 99999999999999999999988654 344444432
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCC-eEEEEEec
Q 013749 201 QKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN-IIRIKLLR 279 (437)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~v~i~~ 279 (437)
.+|.|||+|+|. +.++++|.+.|++.++ |..|.+..
T Consensus 163 ------------------------------------------an~RLFiG~IPK-~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 163 ------------------------------------------ANCRLFIGNIPK-TKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred ------------------------------------------ecceeEeccCCc-cccHHHHHHHHHhhCCCeeEEEEec
Confidence 224899999997 8999999999999985 88888876
Q ss_pred CC------CCeEEEEeCCHHHHHHHHHHhcC--ceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccC
Q 013749 280 NK------PDHALVQMGDGFQAELAVHFLKG--ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 351 (437)
Q Consensus 280 ~~------~g~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (437)
+. +|||||+|.++..|..|-+.|-. ..+.|..+.|.|+.+......+. .++
T Consensus 200 ~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~---------------ms~------ 258 (506)
T KOG0117|consen 200 SPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDT---------------MSK------ 258 (506)
T ss_pred CccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhh---------------hhh------
Confidence 32 89999999999999999887754 66789999999998775322111 111
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
-..|||+||+.++||+.|+++|++||.|.+|+.+ +.||||+|.++++|.+||+.+||+.|+|..|.|++||+..
T Consensus 259 --VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 259 --VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred --eeeeeeeccchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 2679999999999999999999999999999998 5599999999999999999999999999999999999988
Q ss_pred cccc
Q 013749 432 IREN 435 (437)
Q Consensus 432 ~~~~ 435 (437)
.+.+
T Consensus 333 k~k~ 336 (506)
T KOG0117|consen 333 KKKK 336 (506)
T ss_pred hhcc
Confidence 7764
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=277.14 Aligned_cols=399 Identities=18% Similarity=0.229 Sum_probs=262.9
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
.||||++||.+++.++|.++|+.+|+|..+.++.+ |||+||+|.-.+|+++|+...++. .+.|+.|.|.++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~--kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQS--KFEGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcC--cccceeccccccc
Confidence 79999999999999999999999999999999976 599999999999999999999988 8999999999988
Q ss_pred cccccccc---cCC-------CCC---CCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE----eeCCccEEE
Q 013749 80 HQELTTME---QNA-------QGR---GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQAL 142 (437)
Q Consensus 80 ~~~~~~~~---~~~-------~~~---~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~----~~~~g~~af 142 (437)
++...... .+. +.+ .......++|+|+|||+.+.+.+|..+|+.||.|..|.+. ++-+|| ||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF-aF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF-AF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce-EE
Confidence 75433211 110 000 1112336789999999999999999999999999999987 445688 99
Q ss_pred EEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeee--------------------cCCcccCccCCCC--CCC
Q 013749 143 IQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNY--------------------NNERSRDFTNPNL--PAE 200 (437)
Q Consensus 143 V~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~--~~~ 200 (437)
|+|.+..+|..|++.+|+..|.|+ ++.|.|+-....-... ..+...+...... ...
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR--~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~e 240 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGR--PVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSE 240 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCc--eeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccc
Confidence 999999999999999999999884 6788888654321100 0000000000000 000
Q ss_pred CCC-CCC-CCCC--CCCC----CCCcccchhhhhhhhcCCCCCC--CCCCCCCccEEEEecCCCCCCCHHHHHHHHhccC
Q 013749 201 QKG-RPS-QSGY--SEAG----VAFPQMANAAAIAAAFGGGLPP--GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYG 270 (437)
Q Consensus 201 ~~~-~~~-~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G 270 (437)
+.. ... .-+. ++.. ..+-.... +........... .........+|||.|||+| +|+++|.++|++||
T Consensus 241 deEe~D~~se~~ee~~~~Eee~~~vDd~e~--S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD-~tEEel~~~fskFG 317 (678)
T KOG0127|consen 241 DEEETDGNSEAFEEGEESEEEEDDVDDEES--SGKKESDKKAQNKTTRENITEGKTVFVRNLPFD-TTEEELKEHFSKFG 317 (678)
T ss_pred ccccccccchhhhccccccccccccccccc--cccCcccchhccccccccccccceEEEecCCcc-ccHHHHHHHHHhhc
Confidence 000 000 0000 0000 00000000 000000000000 0112234479999999995 99999999999999
Q ss_pred CeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHh-----cC-ceeCCcEEEEEEccCCCCCCC-----------CCc
Q 013749 271 NIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFL-----KG-ALLFGKRLEVNFSKHPNITQG-----------ADT 328 (437)
Q Consensus 271 ~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~~~~~~~~~~-----------~~~ 328 (437)
.|..+.++.++ +|+|||.|.+..+|..||... .| ..+.||.|.|..+-....... +..
T Consensus 318 ~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkr 397 (678)
T KOG0127|consen 318 EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKR 397 (678)
T ss_pred cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCcc
Confidence 99999888755 899999999999999999976 24 678999999998765543110 000
Q ss_pred ccccc-CCCCCCCcchhccc---------------------cccCCCcceEEecCCCCCCCHHHHHHhhhc-----cCCe
Q 013749 329 HEYMN-SNLNRFNRNAAKNY---------------------RYCCSPTKMIHLSTLPQDVTEEEIVSHLEE-----HGSI 381 (437)
Q Consensus 329 ~~~~~-~~~~~~~~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-----~G~v 381 (437)
.-|.. ...-+...+.+... .+.......|.|+|||..+++..|..+... -+.+
T Consensus 398 NLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~ 477 (678)
T KOG0127|consen 398 NLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKV 477 (678)
T ss_pred ceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhc
Confidence 00000 00000000100000 112223456889999999999999998854 2333
Q ss_pred eE-EEEEe-------eCCceEEEEEecCHHHHHHHHHHh
Q 013749 382 VN-TKLFE-------MNGKKQALVLFETEEQATEALVCK 412 (437)
Q Consensus 382 ~~-~~i~~-------~~~~~~afV~f~~~~~A~~A~~~l 412 (437)
.. ++.+. +...||+|+.|...|+|.+|+..+
T Consensus 478 kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 478 KKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred chhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 22 22221 123789999999999999999776
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6e-37 Score=307.03 Aligned_cols=247 Identities=21% Similarity=0.310 Sum_probs=208.3
Q ss_pred EEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEec
Q 013749 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~ 176 (437)
.|||+|||.++|+++|+++|++||.|.+|.+. ++++|+ |||+|.+.++|++|++.+++..+.++ .+++.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~-afV~F~~~~~A~~Al~~ln~~~i~gk--~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGY-GYVNFQNPADAERALETMNFKRLGGK--PIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe--eEEeeccc
Confidence 38999999999999999999999999999875 556788 99999999999999999999888774 66888874
Q ss_pred CCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCC
Q 013749 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR 256 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 256 (437)
.. +... .....+|||+|||. .
T Consensus 79 ~~----------------~~~~------------------------------------------~~~~~~vfV~nLp~-~ 99 (562)
T TIGR01628 79 RD----------------PSLR------------------------------------------RSGVGNIFVKNLDK-S 99 (562)
T ss_pred cc----------------cccc------------------------------------------ccCCCceEEcCCCc-c
Confidence 21 0000 01112799999998 6
Q ss_pred CCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccc
Q 013749 257 IDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYM 332 (437)
Q Consensus 257 ~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 332 (437)
+++++|+++|+.||.|.+|++..+. +|+|||+|.+.++|..|++.+||..+.|+.|.|..........
T Consensus 100 ~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~-------- 171 (562)
T TIGR01628 100 VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE-------- 171 (562)
T ss_pred CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc--------
Confidence 9999999999999999999998753 7899999999999999999999999999999997655432111
Q ss_pred cCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHH
Q 013749 333 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEAL 409 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~ 409 (437)
. ......++|||+|||.++|+++|+++|++||.|.++.++.+. .+|||||+|.+.++|.+|+
T Consensus 172 -------~--------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av 236 (562)
T TIGR01628 172 -------A--------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAV 236 (562)
T ss_pred -------c--------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 0 011223679999999999999999999999999999998753 3789999999999999999
Q ss_pred HHhCCCccC----CcEEEEEeccCcccc
Q 013749 410 VCKHASSLG----GSIIRISFSQLQSIR 433 (437)
Q Consensus 410 ~~l~~~~~~----g~~l~v~~s~~~~~~ 433 (437)
+.|||..+. |+.|.|.+++.+..+
T Consensus 237 ~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 237 EEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred HHhCCcEecccccceeeEeecccChhhh
Confidence 999999999 999999998877654
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=270.30 Aligned_cols=237 Identities=22% Similarity=0.299 Sum_probs=204.1
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcc-cCeEEEEEe
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTI-RGRNVYVQF 77 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~-~g~~l~v~~ 77 (437)
.+-|||+.||.++.|+||..+|++.|+|.++++|.| ||||||+|.+.++|++|++.||++ .| .|+.|.|..
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~--Eir~GK~igvc~ 160 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY--EIRPGKLLGVCV 160 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc--cccCCCEeEEEE
Confidence 467999999999999999999999999999999987 699999999999999999999998 54 688888876
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCc-eeEEEEE------eeCCccEEEEEecChhH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF-VEKIVTF------QKSAGFQALIQYQLRPS 150 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~i~~~------~~~~g~~afV~f~~~~~ 150 (437)
|-.. .||||+|||..+++++|.+.+++.++ |.+|.+. .+++|| |||+|.++.+
T Consensus 161 Svan-------------------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGF-aFveYe~H~~ 220 (506)
T KOG0117|consen 161 SVAN-------------------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGF-AFVEYESHRA 220 (506)
T ss_pred eeec-------------------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccce-EEEEeecchh
Confidence 4331 24999999999999999999999865 4455544 678999 9999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhc
Q 013749 151 AVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAF 230 (437)
Q Consensus 151 A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (437)
|..|.++|-...|..+...+.|.|+.+..- +..
T Consensus 221 Aa~aRrKl~~g~~klwgn~~tVdWAep~~e-----------------~de------------------------------ 253 (506)
T KOG0117|consen 221 AAMARRKLMPGKIKLWGNAITVDWAEPEEE-----------------PDE------------------------------ 253 (506)
T ss_pred HHHHHhhccCCceeecCCcceeeccCcccC-----------------CCh------------------------------
Confidence 999999988888877778889999974210 000
Q ss_pred CCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCc
Q 013749 231 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK 310 (437)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 310 (437)
........|||+||+. ++|++.|+.+|+.||.|.+|+.++| ||||.|.+.++|.+|++.+||..+.|.
T Consensus 254 --------d~ms~VKvLYVRNL~~-~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 254 --------DTMSKVKVLYVRNLME-STTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred --------hhhhheeeeeeeccch-hhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHHHHhcCceecCc
Confidence 0111223899999998 7999999999999999999998877 999999999999999999999999999
Q ss_pred EEEEEEccCCCC
Q 013749 311 RLEVNFSKHPNI 322 (437)
Q Consensus 311 ~l~v~~~~~~~~ 322 (437)
.|.|.++++...
T Consensus 322 ~iEvtLAKP~~k 333 (506)
T KOG0117|consen 322 PIEVTLAKPVDK 333 (506)
T ss_pred eEEEEecCChhh
Confidence 999999998765
No 16
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=7.1e-37 Score=287.52 Aligned_cols=374 Identities=18% Similarity=0.236 Sum_probs=264.6
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccccc
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT 84 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~ 84 (437)
+-.|||+|||+.++|+||+.+| |||.|...+.|.+|...+.+. .+.|+.|+|..+..+...
T Consensus 227 tgrlf~RNLpyt~~eed~~~lf-----------------a~v~~~~~~~avka~~~~D~k--~fqgrmlhvlp~~~k~~~ 287 (725)
T KOG0110|consen 227 TGRLFVRNLPYTSTEEDLLKLF-----------------AFVTFMFPEHAVKAYSELDGK--VFQGRMLHVLPSKEKSTA 287 (725)
T ss_pred hhhhhhccCCccccHHHHHHhh-----------------HHHhhhhhHHHHhhhhhcccc--ccccceeeecCcchhhhh
Confidence 3468999999999999999999 999999999999999999998 899999998866543221
Q ss_pred c------------------cccCCC-----------------------------------CCC-----------------
Q 013749 85 T------------------MEQNAQ-----------------------------------GRG----------------- 94 (437)
Q Consensus 85 ~------------------~~~~~~-----------------------------------~~~----------------- 94 (437)
. +..... +..
T Consensus 288 ~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~ 367 (725)
T KOG0110|consen 288 KEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRF 367 (725)
T ss_pred hhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhh
Confidence 1 000000 000
Q ss_pred ------------CCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCC
Q 013749 95 ------------DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162 (437)
Q Consensus 95 ------------~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~ 162 (437)
.....-..++++|||..+..+++..+|..||.|.++.+. ..|..|+|+|.++.+|+.|+..|....
T Consensus 368 ~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr 445 (725)
T KOG0110|consen 368 FEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSR 445 (725)
T ss_pred HHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhh
Confidence 000111348899999999999999999999999999665 345559999999999999999999877
Q ss_pred CCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCC-CCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCC
Q 013749 163 IYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ-KGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGT 241 (437)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
+.. .++.+.|+....+....+......-....+.... ...+...+. +..-.. ...+...+......
T Consensus 446 ~k~--~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~------v~eD~d-----~te~ss~a~~a~~~ 512 (725)
T KOG0110|consen 446 FKS--APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQ------VEEDKD-----PTEESSLARVAEDE 512 (725)
T ss_pred hcc--CccccccChhhhccCCccccccccccccccccCcceeccccccc------ccccCC-----ccccccchhhhhcc
Confidence 754 5678888876554422110000000000000000 000000000 000000 00000000000111
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC--------CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLE 313 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--------~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 313 (437)
...+.|||.||++ .++.++|..+|+.+|.|.++.|...+ .|||||+|.+.++|+.|++.|+|..+.|+.|.
T Consensus 513 ~~~t~lfvkNlnf-~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 513 ETETKLFVKNLNF-DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred ccchhhhhhcCCc-ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 1223399999999 59999999999999999999776532 49999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC--
Q 013749 314 VNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-- 391 (437)
Q Consensus 314 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-- 391 (437)
|.++........+ +. .. .......|+|+|||+..+-.+++++|..||.|.+|+|+...+
T Consensus 592 lk~S~~k~~~~~g--K~------------~~-----~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~ 652 (725)
T KOG0110|consen 592 LKISENKPASTVG--KK------------KS-----KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKG 652 (725)
T ss_pred EEeccCccccccc--cc------------cc-----cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcch
Confidence 9998822110000 00 00 111246799999999999999999999999999999986522
Q ss_pred --ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 392 --KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 392 --~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
+|||||+|-++++|.+|+.+|.+.+|.||+|.++||+..+.
T Consensus 653 a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 653 AHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 78999999999999999999999999999999999987654
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.6e-35 Score=290.24 Aligned_cols=309 Identities=20% Similarity=0.296 Sum_probs=210.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||..+++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|+. +++. .+.|++|.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v~ 163 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIVQ 163 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEEe
Confidence 35789999999999999999999999999999999976 5999999999999999997 7777 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSA 151 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A 151 (437)
++................ .......|||+|||..+++++|.++|+.||.|..|.+. ++++|+ |||+|.+.++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~-afV~f~~~e~A 241 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGF-GFIQFHDAEEA 241 (457)
T ss_pred ecchhhhhhhhcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHH
Confidence 865432211110000000 11113569999999999999999999999999998876 356787 99999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCc-----cCCCCCCCCC-------------CCCCCCCCCCC
Q 013749 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF-----TNPNLPAEQK-------------GRPSQSGYSEA 213 (437)
Q Consensus 152 ~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------------~~~~~~~~~~~ 213 (437)
.+|++.|+|..+.+ .+|.|.|+........... ...+. .......... .....++....
T Consensus 242 ~~A~~~l~g~~i~g--~~i~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (457)
T TIGR01622 242 KEALEVMNGFELAG--RPIKVGYAQDSTYLLDAAN-TFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSK 318 (457)
T ss_pred HHHHHhcCCcEECC--EEEEEEEccCCCccccchh-hhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccch
Confidence 99999999988866 5788888763211111100 00000 0000000000 00000000000
Q ss_pred CCCCcccchhhhhh-------------hhcCCCCCCCCCCCCCccEEEEecCCCCCCC----------HHHHHHHHhccC
Q 013749 214 GVAFPQMANAAAIA-------------AAFGGGLPPGITGTNDRCTVLVSNLNSDRID----------EDKLFNLFSLYG 270 (437)
Q Consensus 214 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t----------~~~l~~~F~~~G 270 (437)
...++......... ........+......++.+|+|.||.. ..+ .+||.+.|++||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~-~~~~~~~~~~~~~~~dv~~e~~k~G 397 (457)
T TIGR01622 319 IALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFD-PATEEEPNFDNEILDDVKEECSKYG 397 (457)
T ss_pred hhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCC-CcccccchHHHHHHHHHHHHHHhcC
Confidence 00000000000000 000000001111234567999999964 233 258999999999
Q ss_pred CeEEEEEec-CCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 271 NIIRIKLLR-NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 271 ~v~~v~i~~-~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
.|..|.+.. ...|++||+|.++++|..|++.|||..|+|+.|.+.|....
T Consensus 398 ~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 398 GVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999998874 44899999999999999999999999999999999997644
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.9e-36 Score=248.08 Aligned_cols=265 Identities=18% Similarity=0.294 Sum_probs=212.1
Q ss_pred EEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEec
Q 013749 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~ 176 (437)
.+.|.-||..+|+|+++.+|+..|+|+++.+. +.+-|| +||.|.+++||.+|+..+||..+.. .+++|.|++
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGY-GFVNYv~p~DAe~AintlNGLrLQ~--KTIKVSyAR 119 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYVRPKDAEKAINTLNGLRLQN--KTIKVSYAR 119 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccceeeeeeeecccccccccc-ceeeecChHHHHHHHhhhcceeecc--ceEEEEecc
Confidence 46788899999999999999999999999876 667788 9999999999999999999988865 577899987
Q ss_pred CCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCC
Q 013749 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR 256 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 256 (437)
++...++ ...|||++||. .
T Consensus 120 PSs~~Ik------------------------------------------------------------~aNLYvSGlPk-t 138 (360)
T KOG0145|consen 120 PSSDSIK------------------------------------------------------------DANLYVSGLPK-T 138 (360)
T ss_pred CChhhhc------------------------------------------------------------ccceEEecCCc-c
Confidence 5322221 11799999997 8
Q ss_pred CCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCc--EEEEEEccCCCCCCC--CC
Q 013749 257 IDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGK--RLEVNFSKHPNITQG--AD 327 (437)
Q Consensus 257 ~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~~~~~~~~~~--~~ 327 (437)
+|..||.++|++||.|+..+++.|. +|.+||.|+...+|..|+..|||..-.|. +|.|.|+...+.... ..
T Consensus 139 MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~l 218 (360)
T KOG0145|consen 139 MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALL 218 (360)
T ss_pred chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhh
Confidence 9999999999999999888888765 89999999999999999999999876554 899999987655211 11
Q ss_pred ccccccCCCCCCCcchhc----------------------------------cccccCCCcceEEecCCCCCCCHHHHHH
Q 013749 328 THEYMNSNLNRFNRNAAK----------------------------------NYRYCCSPTKMIHLSTLPQDVTEEEIVS 373 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 373 (437)
..-|.. +.+|+.-+... +.......+..|||.||.++..|.-|-+
T Consensus 219 s~ly~s-p~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQ 297 (360)
T KOG0145|consen 219 SQLYQS-PARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQ 297 (360)
T ss_pred HHhhcC-ccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHH
Confidence 111111 11111100000 0000111257899999999999999999
Q ss_pred hhhccCCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 374 HLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 374 ~f~~~G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
+|.+||.|.+|++++| +.||||||.+.+-++|.-|+.+|||+.+.+|.|.|+|...+.
T Consensus 298 lFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 298 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 9999999999999976 348899999999999999999999999999999999977653
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.6e-34 Score=279.13 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=137.3
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
..++|||+|||++++|++|+++|++||+|.+|.+++| +|||||+|.+.++|.+|++.+|+. .++|+.|+|.+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~r 183 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 183 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeecc
Confidence 4578999999999999999999999999999999865 599999999999999999999988 89999999986
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~ 152 (437)
........... ...........+|||+|||.++++++|+++|+.||.|.++.+. ++++|| |||+|.+.++|.
T Consensus 184 p~~~p~a~~~~--~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGf-GFVeFe~~e~A~ 260 (612)
T TIGR01645 184 PSNMPQAQPII--DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQS 260 (612)
T ss_pred ccccccccccc--ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCe-EEEEECCHHHHH
Confidence 43221110000 0001112234579999999999999999999999999998876 357898 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEecC
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
+|++.||+..+.| ..|+|.++..
T Consensus 261 kAI~amNg~elgG--r~LrV~kAi~ 283 (612)
T TIGR01645 261 EAIASMNLFDLGG--QYLRVGKCVT 283 (612)
T ss_pred HHHHHhCCCeeCC--eEEEEEecCC
Confidence 9999999998876 4667776653
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.8e-34 Score=286.97 Aligned_cols=294 Identities=15% Similarity=0.226 Sum_probs=201.2
Q ss_pred cEEEEEEeCcCCCCCHHHHHHhcCCC------------CceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCC
Q 013749 99 RILLVTIHHMLYPITVEVLHQVFSPH------------GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166 (437)
Q Consensus 99 ~~~~v~v~nl~~~~~~~~l~~~f~~~------------G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~ 166 (437)
...+|||+|||+.+|+++|+++|..+ +.|..+. ..+.+|| |||+|.+.++|..|| .|+|..+.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~-afVeF~~~e~A~~Al-~l~g~~~~g- 249 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNF-AFLEFRTVEEATFAM-ALDSIIYSN- 249 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCE-EEEEeCCHHHHhhhh-cCCCeEeeC-
Confidence 34569999999999999999999864 2333333 3566888 999999999999999 599988876
Q ss_pred CceEEEEEecCCcceeeecCCcccCccC-CCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCcc
Q 013749 167 CCQLDIQFSNLDELQVNYNNERSRDFTN-PNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRC 245 (437)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
..|++...+ ++.. +....... ...+. ...+. ... .........+.+
T Consensus 250 -~~l~v~r~~--------------~~~~~~~~~~~~~--~~~~~-----~~~~~----------~~~-~~~~~~~~~~~~ 296 (509)
T TIGR01642 250 -VFLKIRRPH--------------DYIPVPQITPEVS--QKNPD-----DNAKN----------VEK-LVNSTTVLDSKD 296 (509)
T ss_pred -ceeEecCcc--------------ccCCccccCCCCC--CCCCc-----ccccc----------ccc-ccccccCCCCCC
Confidence 445553322 1110 00000000 00000 00000 000 000001123446
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
+|||+|||. .+++++|.++|+.||.|..+.++.+. +|||||+|.+.++|..|+..|||..++|+.|.|.++...
T Consensus 297 ~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 297 RIYIGNLPL-YLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 899999998 79999999999999999999988752 789999999999999999999999999999999998754
Q ss_pred CCCCCCCccccccCCCCCCCcchhcc-ccccCCCcceEEecCCCCC--C--------CHHHHHHhhhccCCeeEEEEEee
Q 013749 321 NITQGADTHEYMNSNLNRFNRNAAKN-YRYCCSPTKMIHLSTLPQD--V--------TEEEIVSHLEEHGSIVNTKLFEM 389 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nlp~~--~--------t~~~l~~~f~~~G~v~~~~i~~~ 389 (437)
............. +........... ......|+.+|+|.|+... + ..++|+++|+.||.|..|+|+..
T Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~ 454 (509)
T TIGR01642 376 ANQATIDTSNGMA-PVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRP 454 (509)
T ss_pred CCCCCcccccccc-ccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeecc
Confidence 3321111000000 000000000000 0012346789999999642 1 23689999999999999999853
Q ss_pred -------CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 390 -------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 390 -------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.|+|||+|.+.++|++|+..|||.+|.|+.|.|+|.....
T Consensus 455 ~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 455 NGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHH
Confidence 236899999999999999999999999999999999976543
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.3e-34 Score=287.97 Aligned_cols=281 Identities=17% Similarity=0.207 Sum_probs=201.6
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccC------------CccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQP------------FGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR 69 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~------------~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~ 69 (437)
+..+++|||+|||.++|+++|+++|.. .+.|..+.+.+++|||||+|.+.++|..||. |++. .+.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~--~~~ 248 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSI--IYS 248 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCe--Eee
Confidence 456899999999999999999999986 3567788888999999999999999999995 8887 899
Q ss_pred CeEEEEEecccccccc------cccCC--C--------CCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE
Q 013749 70 GRNVYVQFSSHQELTT------MEQNA--Q--------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (437)
Q Consensus 70 g~~l~v~~s~~~~~~~------~~~~~--~--------~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~ 133 (437)
|++|.|.......... ..... . ...........|||+|||..+++++|+++|..||.|..+.+.
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 9999987433211000 00000 0 000112233469999999999999999999999999988765
Q ss_pred -----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCC
Q 013749 134 -----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS 208 (437)
Q Consensus 134 -----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
+.++|| |||+|.+.++|..|++.|+|..+.+. .|.|.++......... +......+...
T Consensus 329 ~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~--~l~v~~a~~~~~~~~~------~~~~~~~~~~~------- 392 (509)
T TIGR01642 329 KDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDN--KLHVQRACVGANQATI------DTSNGMAPVTL------- 392 (509)
T ss_pred ecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCe--EEEEEECccCCCCCCc------ccccccccccc-------
Confidence 457888 99999999999999999999999774 5677777532110000 00000000000
Q ss_pred CCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCC-CC--------CHHHHHHHHhccCCeEEEEEec
Q 013749 209 GYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSD-RI--------DEDKLFNLFSLYGNIIRIKLLR 279 (437)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~~--------t~~~l~~~F~~~G~v~~v~i~~ 279 (437)
..+.+. . ... .....++.+|+|.|+... .+ ..++|+++|++||.|..|.|..
T Consensus 393 -------~~~~~~------~---~~~---~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 393 -------LAKALS------Q---SIL---QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred -------ccccch------h---hhc---cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 000000 0 000 011234568999999741 01 1257999999999999999986
Q ss_pred CC--------CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 280 NK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 280 ~~--------~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
+. .|++||+|.+.++|.+|+..|||..|.|+.|.+.|....
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 41 479999999999999999999999999999999997643
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=9e-34 Score=277.96 Aligned_cols=280 Identities=19% Similarity=0.257 Sum_probs=205.0
Q ss_pred EEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEE
Q 013749 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (437)
Q Consensus 100 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~ 174 (437)
...|||+|||..+++++|+++|+.||.|..|.+. ++++|+ |||+|.+.++|.+|+. |+|..+.+. ++.+.+
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~-afVeF~~~e~A~~Al~-l~g~~~~g~--~i~v~~ 164 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGV-AYVEFYDVESVIKALA-LTGQMLLGR--PIIVQS 164 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE-EEEEECCHHHHHHHHH-hCCCEECCe--eeEEee
Confidence 3459999999999999999999999999998876 456888 9999999999999995 899888775 445544
Q ss_pred ecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCC
Q 013749 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS 254 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 254 (437)
+....... .. .. .. ... ..+..++|||+|||.
T Consensus 165 ~~~~~~~~-------~~-----~~--~~---------------------------~~~-------~~p~~~~l~v~nl~~ 196 (457)
T TIGR01622 165 SQAEKNRA-------AK-----AA--TH---------------------------QPG-------DIPNFLKLYVGNLHF 196 (457)
T ss_pred cchhhhhh-------hh-----cc--cc---------------------------cCC-------CCCCCCEEEEcCCCC
Confidence 43110000 00 00 00 000 011145899999998
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCC---
Q 013749 255 DRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGA--- 326 (437)
Q Consensus 255 ~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~--- 326 (437)
.+++++|.++|+.||.|..|.+..+. +|||||+|.+.++|..|+..|||..+.|+.|+|.|+.........
T Consensus 197 -~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~ 275 (457)
T TIGR01622 197 -NITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANT 275 (457)
T ss_pred -CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhh
Confidence 69999999999999999999998753 689999999999999999999999999999999996532110000
Q ss_pred ---------Cccc-----------------------cccC--------CCCCCC--c---c----------hhccc----
Q 013749 327 ---------DTHE-----------------------YMNS--------NLNRFN--R---N----------AAKNY---- 347 (437)
Q Consensus 327 ---------~~~~-----------------------~~~~--------~~~~~~--~---~----------~~~~~---- 347 (437)
.... ..+. ...+.. . + ...+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (457)
T TIGR01622 276 FEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPS 355 (457)
T ss_pred hccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCc
Confidence 0000 0000 000000 0 0 00000
Q ss_pred cccCCCcceEEecCCCCCCC----------HHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCcc
Q 013749 348 RYCCSPTKMIHLSTLPQDVT----------EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 417 (437)
Q Consensus 348 ~~~~~~~~~l~v~nlp~~~t----------~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~ 417 (437)
.....++++|+|.||....+ .+||++.|++||.|..+.+......|++||+|.+.++|.+|++.|||..+
T Consensus 356 ~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f 435 (457)
T TIGR01622 356 TNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYF 435 (457)
T ss_pred ccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCccc
Confidence 00124568899999954333 37899999999999999998666789999999999999999999999999
Q ss_pred CCcEEEEEeccCccc
Q 013749 418 GGSIIRISFSQLQSI 432 (437)
Q Consensus 418 ~g~~l~v~~s~~~~~ 432 (437)
+|+.|.++|......
T Consensus 436 ~gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 436 GGKMITAAFVVNDVY 450 (457)
T ss_pred CCeEEEEEEEcHHHH
Confidence 999999999866543
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-34 Score=241.51 Aligned_cols=175 Identities=22% Similarity=0.384 Sum_probs=152.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
.+||+.|.++ ++-++|++.|.+||+|.++++++|. +||+||.|.+.++|+.||..|||..|++|.|+..|++.+
T Consensus 64 hvfvgdls~e-I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 64 HVFVGDLSPE-IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eEEehhcchh-cchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 6999999995 9999999999999999999999965 899999999999999999999999999999999999887
Q ss_pred CCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEec
Q 013749 321 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFE 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~ 400 (437)
....+.....| .+-+....+..++||++|++..+||++|++.|++||.|.+|++++ .+||+||.|.
T Consensus 143 p~e~n~~~ltf------------deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~ 208 (321)
T KOG0148|consen 143 PSEMNGKPLTF------------DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFE 208 (321)
T ss_pred ccccCCCCccH------------HHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEec
Confidence 64333332211 111122345569999999999999999999999999999999995 6999999999
Q ss_pred CHHHHHHHHHHhCCCccCCcEEEEEeccCcccccc
Q 013749 401 TEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 435 (437)
Q Consensus 401 ~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~~ 435 (437)
+.|.|.+||..||+..+.|+.++++|.|....-.+
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 99999999999999999999999999987665443
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=254.90 Aligned_cols=161 Identities=19% Similarity=0.314 Sum_probs=135.8
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCccc-CeEEEEEec
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIR-GRNVYVQFS 78 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~-g~~l~v~~s 78 (437)
-.+||+.||+.|+|.|||++|++||.|.+|.|+||| |||||.|.+.++|.+|+.+||.....-+ -++|.|.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 468999999999999999999999999999999995 9999999999999999999987643222 347888887
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE----eeCCccEEEEEecChhHHHHH
Q 013749 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQALIQYQLRPSAVVA 154 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~----~~~~g~~afV~f~~~~~A~~A 154 (437)
..+...... . ..|||+-|+..++|.+++++|++||.|++|.++ +.++|+ |||.|.+.|.|..|
T Consensus 115 d~E~er~~~----------e--~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGc-aFV~fstke~A~~A 181 (510)
T KOG0144|consen 115 DGERERIVE----------E--RKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGC-AFVKFSTKEMAVAA 181 (510)
T ss_pred chhhhcccc----------c--hhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccce-eEEEEehHHHHHHH
Confidence 765332100 1 128999999999999999999999999999887 678897 99999999999999
Q ss_pred HHHcCCCCCCCC-CceEEEEEecCCc
Q 013749 155 RSSLQGRNIYDG-CCQLDIQFSNLDE 179 (437)
Q Consensus 155 ~~~l~~~~~~~~-~~~l~~~~~~~~~ 179 (437)
++.|||..-..+ ..+|-|.|+....
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCC
Confidence 999999765444 5788999987653
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=252.00 Aligned_cols=292 Identities=20% Similarity=0.328 Sum_probs=210.4
Q ss_pred EEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEe
Q 013749 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 101 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
.+|||++||++++.++|.++|+.+|+|..+.+. ..++|| +||.|.-.+++++|+...++..+.| +.|++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGf-gfVtFam~ED~qrA~~e~~~~kf~G--r~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGF-GFVTFAMEEDVQRALAETEQSKFEG--RILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCc-cceeeehHhHHHHHHHHhhcCcccc--eecccccc
Confidence 459999999999999999999999999998765 456898 9999999999999999999988877 45677766
Q ss_pred cCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCC
Q 013749 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSD 255 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 255 (437)
+............... ...+..+. -+.-.....+...|.|.|||+
T Consensus 83 ~~R~r~e~~~~~e~~~---veK~~~q~-------------------------------~~~k~~v~~~k~rLIIRNLPf- 127 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKA---VEKPIEQK-------------------------------RPTKAKVDLPKWRLIIRNLPF- 127 (678)
T ss_pred cccccchhcccccchh---hhcccccC-------------------------------CcchhhccCccceEEeecCCc-
Confidence 6543222110000000 00000000 000000011133899999999
Q ss_pred CCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCC------
Q 013749 256 RIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG------ 325 (437)
Q Consensus 256 ~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~------ 325 (437)
.+...+|..+|+.||.|..|.|++.. .|||||+|....+|..|++.+||..|.||+|-|.|+-....-..
T Consensus 128 ~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~ 207 (678)
T KOG0127|consen 128 KCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEK 207 (678)
T ss_pred ccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhh
Confidence 79999999999999999999998744 68999999999999999999999999999999999976554110
Q ss_pred -----------------CCccccccC---------C---------------C---CCCCc---c-------hhccc--cc
Q 013749 326 -----------------ADTHEYMNS---------N---------------L---NRFNR---N-------AAKNY--RY 349 (437)
Q Consensus 326 -----------------~~~~~~~~~---------~---------------~---~~~~~---~-------~~~~~--~~ 349 (437)
+...++... . . ..... + .+++- +.
T Consensus 208 ~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~e 287 (678)
T KOG0127|consen 208 QSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRE 287 (678)
T ss_pred hhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccc
Confidence 000000000 0 0 00000 0 00000 11
Q ss_pred cCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHh-----CC-CccCC
Q 013749 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCK-----HA-SSLGG 419 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l-----~~-~~~~g 419 (437)
....+.||||+|||+++|+++|...|++||.|.++.+..++. +|+|||.|.+..+|++||+.. .| ..|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 112348999999999999999999999999999998886543 889999999999999999876 33 67889
Q ss_pred cEEEEEeccCc
Q 013749 420 SIIRISFSQLQ 430 (437)
Q Consensus 420 ~~l~v~~s~~~ 430 (437)
|.|.|..+=.+
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999987543
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-33 Score=234.30 Aligned_cols=232 Identities=19% Similarity=0.299 Sum_probs=185.3
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
...|||||+||+.++||+-|..||.+.|.|.+++|+.+ .|.|.|+....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAPG 52 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCcc
Confidence 34689999999999999999999999999999999988 23444443321
Q ss_pred ccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHH
Q 013749 83 LTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSS 157 (437)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~ 157 (437)
... ......-..|||+.|...++.++|++.|.+||.|.+..+. .+++|| +||.|-+.++|++|++.
T Consensus 53 nQs--------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGY-gFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 53 NQS--------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGY-GFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cCC--------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccce-eEEeccchHHHHHHHHH
Confidence 100 0112234569999999999999999999999999887665 788998 99999999999999999
Q ss_pred cCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCC
Q 013749 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPG 237 (437)
Q Consensus 158 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (437)
|+|+=|.. ..++..|+..+.-... . ..+.-.+ ...
T Consensus 124 MnGqWlG~--R~IRTNWATRKp~e~n---~-------~~ltfde-------------------------------V~N-- 158 (321)
T KOG0148|consen 124 MNGQWLGR--RTIRTNWATRKPSEMN---G-------KPLTFDE-------------------------------VYN-- 158 (321)
T ss_pred hCCeeecc--ceeeccccccCccccC---C-------CCccHHH-------------------------------Hhc--
Confidence 99977744 6779999864320000 0 0000000 000
Q ss_pred CCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 238 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 238 ~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
...+.+|+||++|++. .++|++|+..|+.||.|..|+++++ +||+||.|.+.|.|.+||..|||..+.|..++..|.
T Consensus 159 -Qssp~NtsVY~G~I~~-~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 -QSSPDNTSVYVGNIAS-GLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred -cCCCCCceEEeCCcCc-cccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 1245668999999998 6999999999999999999999999 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013749 318 KHPNI 322 (437)
Q Consensus 318 ~~~~~ 322 (437)
+....
T Consensus 236 Ke~~~ 240 (321)
T KOG0148|consen 236 KEGDD 240 (321)
T ss_pred ccCCC
Confidence 97765
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=246.67 Aligned_cols=275 Identities=17% Similarity=0.290 Sum_probs=217.1
Q ss_pred CcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCC-CCCCCceEE
Q 013749 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRN-IYDGCCQLD 171 (437)
Q Consensus 98 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~-~~~~~~~l~ 171 (437)
.....+||+-||..|+|.||+++|.+||.|.+|.+. +.++|+ +||.|.+.++|.+|+..|+... +.|...++.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gc-CFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGC-CFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccce-EEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 555679999999999999999999999999999876 556787 9999999999999999987654 455577888
Q ss_pred EEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEec
Q 013749 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSN 251 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 251 (437)
+.++.....++ .+.+.|||+-
T Consensus 111 vk~Ad~E~er~-----------------------------------------------------------~~e~KLFvg~ 131 (510)
T KOG0144|consen 111 VKYADGERERI-----------------------------------------------------------VEERKLFVGM 131 (510)
T ss_pred ecccchhhhcc-----------------------------------------------------------ccchhhhhhh
Confidence 88875321111 1112699999
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCc-eeCCc--EEEEEEccCCCCCC
Q 013749 252 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGA-LLFGK--RLEVNFSKHPNITQ 324 (437)
Q Consensus 252 l~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~-~~~g~--~l~v~~~~~~~~~~ 324 (437)
|+. .++|.|++++|++||.|++|.|+++. +|||||+|.+.+.|..|++.|||. .+.|. +|.|.|+.+.....
T Consensus 132 lsK-~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 132 LSK-QCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccc-cccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 998 79999999999999999999999965 999999999999999999999994 45664 89999998776622
Q ss_pred CCC---------------------------cccccc--------------------------------------------
Q 013749 325 GAD---------------------------THEYMN-------------------------------------------- 333 (437)
Q Consensus 325 ~~~---------------------------~~~~~~-------------------------------------------- 333 (437)
+.. ...|.+
T Consensus 211 ~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~ 290 (510)
T KOG0144|consen 211 GKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKT 290 (510)
T ss_pred HHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCC
Confidence 100 000000
Q ss_pred -C-----CCCCCCc-chh-----------------ccc------------------------------------------
Q 013749 334 -S-----NLNRFNR-NAA-----------------KNY------------------------------------------ 347 (437)
Q Consensus 334 -~-----~~~~~~~-~~~-----------------~~~------------------------------------------ 347 (437)
+ ++....+ +++ .+.
T Consensus 291 ~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~ 370 (510)
T KOG0144|consen 291 ASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQI 370 (510)
T ss_pred CCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccc
Confidence 0 0000000 000 000
Q ss_pred -----------------------------------------------cccCCCcceEEecCCCCCCCHHHHHHhhhccCC
Q 013749 348 -----------------------------------------------RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGS 380 (437)
Q Consensus 348 -----------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 380 (437)
+...+.+..|||.+||.+.-+.||-..|..||.
T Consensus 371 ~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~ 450 (510)
T KOG0144|consen 371 GLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGG 450 (510)
T ss_pred cCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccc
Confidence 334556788999999999999999999999999
Q ss_pred eeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 381 IVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 381 v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
|.+.+++-++- |+|+||.|++..+|.+||..|||..+++++|+|.+++.+...
T Consensus 451 Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 451 VLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred eeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999986653 889999999999999999999999999999999999887654
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=7.1e-30 Score=235.32 Aligned_cols=163 Identities=20% Similarity=0.363 Sum_probs=144.1
Q ss_pred CCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 013749 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314 (437)
Q Consensus 240 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 314 (437)
.....++|||+|||+ .+|+++|+++|+.||.|.+|+|+.+. +|||||+|.+.++|..|++.|+|..+.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~-~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQ-DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345678999999999 59999999999999999999998764 589999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----
Q 013749 315 NFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---- 390 (437)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---- 390 (437)
.|+++... .....+|||+|||..+||++|+++|++||.|..++|+.++
T Consensus 182 ~~a~p~~~----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~ 233 (346)
T TIGR01659 182 SYARPGGE----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT 233 (346)
T ss_pred eccccccc----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc
Confidence 99864320 0113679999999999999999999999999999998764
Q ss_pred CceEEEEEecCHHHHHHHHHHhCCCccCC--cEEEEEeccCcc
Q 013749 391 GKKQALVLFETEEQATEALVCKHASSLGG--SIIRISFSQLQS 431 (437)
Q Consensus 391 ~~~~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~s~~~~ 431 (437)
.+++|||+|.+.++|++|++.||+..+.| +.|+|.|++.+.
T Consensus 234 ~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 234 PRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 26899999999999999999999999875 799999988653
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.2e-29 Score=229.64 Aligned_cols=236 Identities=26% Similarity=0.367 Sum_probs=202.0
Q ss_pred EEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee--CCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcc
Q 013749 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK--SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180 (437)
Q Consensus 103 v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~--~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~ 180 (437)
+||+ +++|+..|+++|+++|++.++.+... +-|+ |||.|.++++|.+||+.||...+.|. ++++.|+.
T Consensus 4 l~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy-~yvnf~~~~da~~A~~~~n~~~~~~~--~~rim~s~---- 73 (369)
T KOG0123|consen 4 LYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGY-AYVNFQQPADAERALDTMNFDVLKGK--PIRIMWSQ---- 73 (369)
T ss_pred eecC---CcCChHHHHHHhcccCCceeEEEeecCCccce-EEEecCCHHHHHHHHHHcCCcccCCc--EEEeehhc----
Confidence 7888 89999999999999999999876522 6677 99999999999999999999999884 66888885
Q ss_pred eeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHH
Q 013749 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 260 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~ 260 (437)
+| | ..+||.||++ .++.+
T Consensus 74 ---------rd---~-------------------------------------------------~~~~i~nl~~-~~~~~ 91 (369)
T KOG0123|consen 74 ---------RD---P-------------------------------------------------SLVFIKNLDE-SIDNK 91 (369)
T ss_pred ---------cC---C-------------------------------------------------ceeeecCCCc-ccCcH
Confidence 22 0 1399999998 69999
Q ss_pred HHHHHHhccCCeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccccCCCC
Q 013749 261 KLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLN 337 (437)
Q Consensus 261 ~l~~~F~~~G~v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
+|+++|+.||.|.+|++..+. +|+ ||+|++.++|.+|+..+||..+.|++|.|...........+... +
T Consensus 92 ~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~------ 163 (369)
T KOG0123|consen 92 SLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-Y------ 163 (369)
T ss_pred HHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-h------
Confidence 999999999999999999976 778 99999999999999999999999999999987765432222211 0
Q ss_pred CCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCC
Q 013749 338 RFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHA 414 (437)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~ 414 (437)
...-..+++.|++.+.++++|..+|+.+|.|.++.++++. .++|+||.|.+.++|..|++.||+
T Consensus 164 -------------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 164 -------------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred -------------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccC
Confidence 0112458999999999999999999999999999999753 378999999999999999999999
Q ss_pred CccCCcEEEEEeccCcc
Q 013749 415 SSLGGSIIRISFSQLQS 431 (437)
Q Consensus 415 ~~~~g~~l~v~~s~~~~ 431 (437)
..+.|..+.|.-++.+.
T Consensus 231 ~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKS 247 (369)
T ss_pred CcCCccceeecccccch
Confidence 99999999998877643
No 30
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=215.27 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=178.4
Q ss_pred CCceEEEEcCCCccCcHHHHHHhcc-CCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQ-PFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~-~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
...|.+||.|||+++.+.||+.+|+ +.|+|+-|.++-| ||||.|+|.++|.+++|++.||.+ .+.||+|.|.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~--~~~GR~l~vK 119 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY--EVNGRELVVK 119 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc--cccCceEEEe
Confidence 3457899999999999999999997 5799999999865 699999999999999999999988 9999999998
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE----eeCCccEEEEEecChhHHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~----~~~~g~~afV~f~~~~~A~ 152 (437)
-....+..... +...... ..|+.++..+.-..-|...|+--|...+-... +.+++. .++.|++.-.+.
T Consensus 120 Ed~d~q~~~~~-----~~~r~g~--~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~-~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 120 EDHDEQRDQYG-----RIVRDGG--GGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRN-NTNTMSNDYNNS 191 (608)
T ss_pred ccCchhhhhhh-----heeeccC--cccccCcceecccccccccCCCCccccCCCCccccccccccc-Cccccccccccc
Confidence 54332211111 0000111 17899999999889999999877766543222 555665 899999988888
Q ss_pred HHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCC
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (437)
.++..++.+..+.+. +++ +
T Consensus 192 ~~~~lfgl~~~Flr~--~h~-f---------------------------------------------------------- 210 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRS--LHI-F---------------------------------------------------------- 210 (608)
T ss_pred hhhhcccchhhhhhh--ccC-C----------------------------------------------------------
Confidence 888766554443321 111 0
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeC
Q 013749 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLF 308 (437)
Q Consensus 233 ~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~ 308 (437)
..+....+||.||.. .+..+.|++.|.-.|.|..+.+--++ +|+|.++|.++-+|.+|+..+++..+.
T Consensus 211 -------~pPl~~k~fvanl~~-~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 211 -------SPPLHNKVFVANLDY-KVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred -------CCCccceeeeecccc-ccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 011112689999999 79999999999999999888766554 789999999999999999999987766
Q ss_pred CcEEEEEEc
Q 013749 309 GKRLEVNFS 317 (437)
Q Consensus 309 g~~l~v~~~ 317 (437)
.++..+.+.
T Consensus 283 ~~~~~~Rl~ 291 (608)
T KOG4212|consen 283 DRRMTVRLD 291 (608)
T ss_pred cccceeecc
Confidence 676666553
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=7.7e-29 Score=228.48 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=140.4
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
...++|||++||+++||++|+++|+.||+|++|+|++| +|||||+|.+.++|.+|++.|++. .+.+++|+|.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~--~l~gr~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGI--TVRNKRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCC--ccCCceeeee
Confidence 35689999999999999999999999999999999876 389999999999999999999988 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSA 151 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A 151 (437)
|+.+..... ....|||.|||.++++++|+++|++||.|..+.+. ++++|+ |||+|.+.++|
T Consensus 183 ~a~p~~~~~-------------~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~-aFV~F~~~e~A 248 (346)
T TIGR01659 183 YARPGGESI-------------KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGV-AFVRFNKREEA 248 (346)
T ss_pred ccccccccc-------------ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceE-EEEEECCHHHH
Confidence 987532111 11249999999999999999999999999988776 345687 99999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 152 VVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 152 ~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
++|++.|++..+.++..+|+|.+++.
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCc
Confidence 99999999999988888899998864
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=3.8e-28 Score=235.04 Aligned_cols=171 Identities=21% Similarity=0.311 Sum_probs=143.5
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
..++|||+|||. .+++++|+++|++||.|.+|++..+. +|||||+|.+.++|..|++.|||..+.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~-~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISF-ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 346899999999 69999999999999999999998753 899999999999999999999999999999999864
Q ss_pred cCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----Cce
Q 013749 318 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 393 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~ 393 (437)
....... . ....... .....++|||+|||+++++++|+++|+.||.|.++++.++. .+|
T Consensus 185 ~~~p~a~--~--------~~~~~~~-------~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKG 247 (612)
T TIGR01645 185 SNMPQAQ--P--------IIDMVQE-------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG 247 (612)
T ss_pred ccccccc--c--------ccccccc-------cccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCC
Confidence 4221100 0 0000000 11224789999999999999999999999999999999763 478
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 394 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
||||+|.+.++|.+|++.||+..|+|+.|+|.++.++.
T Consensus 248 fGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 248 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred eEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999999999999999999987643
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=4.5e-27 Score=221.76 Aligned_cols=262 Identities=20% Similarity=0.318 Sum_probs=205.9
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccc
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL 83 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~ 83 (437)
..+.++|+|||..+..++|..+|.+||+|..|.+.+....|+|.|.+..+|.+|+..+... .+...++++.|+.....
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklays--r~k~~plyle~aP~dvf 461 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYS--RFKSAPLYLEWAPEDVF 461 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchh--hhccCccccccChhhhc
Confidence 4578999999999999999999999999999977766677999999999999999999988 78888888888765433
Q ss_pred ccc-----ccCCC----------------C----CCC-----------C-CCcEEEEEEeCcCCCCCHHHHHHhcCCCCc
Q 013749 84 TTM-----EQNAQ----------------G----RGD-----------E-PNRILLVTIHHMLYPITVEVLHQVFSPHGF 126 (437)
Q Consensus 84 ~~~-----~~~~~----------------~----~~~-----------~-~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~ 126 (437)
... ..... . ... . ......+||.||+++.+.+++...|+.+|.
T Consensus 462 ~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~ 541 (725)
T KOG0110|consen 462 TEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT 541 (725)
T ss_pred cCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe
Confidence 311 00000 0 000 0 011112899999999999999999999999
Q ss_pred eeEEEEE--ee------CCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCC
Q 013749 127 VEKIVTF--QK------SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198 (437)
Q Consensus 127 i~~i~~~--~~------~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
|..+.|. .+ +.|| |||+|.++++|+.|++.|+|..+.|+ .|.+.++.... .+....
T Consensus 542 VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH--~l~lk~S~~k~----------~~~~gK--- 605 (725)
T KOG0110|consen 542 VLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGH--KLELKISENKP----------ASTVGK--- 605 (725)
T ss_pred EEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCc--eEEEEeccCcc----------cccccc---
Confidence 9998775 11 3488 99999999999999999999999885 45555553100 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEe
Q 013749 199 AEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 278 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~ 278 (437)
.......++.|+|.|+|+ ..+-.+++.+|..||.+.+|+++
T Consensus 606 --------------------------------------~~~~kk~~tKIlVRNipF-eAt~rEVr~LF~aFGqlksvRlP 646 (725)
T KOG0110|consen 606 --------------------------------------KKSKKKKGTKILVRNIPF-EATKREVRKLFTAFGQLKSVRLP 646 (725)
T ss_pred --------------------------------------ccccccccceeeeeccch-HHHHHHHHHHHhcccceeeeccc
Confidence 001122245899999999 59999999999999999999998
Q ss_pred cCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCC
Q 013749 279 RNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322 (437)
Q Consensus 279 ~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 322 (437)
... +|||||+|-++.+|..|+..|.+..+.||+|.++|++....
T Consensus 647 KK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 647 KKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 752 88999999999999999999999999999999999987653
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.4e-26 Score=197.30 Aligned_cols=274 Identities=18% Similarity=0.285 Sum_probs=199.0
Q ss_pred EEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEE
Q 013749 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (437)
Q Consensus 100 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~ 174 (437)
..+|||+.|.+.+.++.|+..|.+||+|.+|.+. ++++|| |||+|+-+|.|+.|++.|||..+.|+.+ ++-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgF-AFVEYEvPEaAqLAlEqMNg~mlGGRNi--KVg- 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGF-AFVEYEVPEAAQLALEQMNGQMLGGRNI--KVG- 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccce-EEEEEeCcHHHHHHHHHhccccccCccc--ccc-
Confidence 3459999999999999999999999999999864 888999 9999999999999999999999877643 221
Q ss_pred ecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCC
Q 013749 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS 254 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 254 (437)
.+ .++|+.. ++-.+-.-. ...-..|||..+.+
T Consensus 189 -rP-----------------sNmpQAQ--------------piID~vqee----------------Ak~fnRiYVaSvHp 220 (544)
T KOG0124|consen 189 -RP-----------------SNMPQAQ--------------PIIDMVQEE----------------AKKFNRIYVASVHP 220 (544)
T ss_pred -CC-----------------CCCcccc--------------hHHHHHHHH----------------HHhhheEEeeecCC
Confidence 10 0111110 000000000 01113799999999
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCC------
Q 013749 255 DRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT------ 323 (437)
Q Consensus 255 ~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~------ 323 (437)
| .+++||+..|+-||.|.+|.+-+.. +||+|++|.+..+-..|+..||=+.++|..|+|...-.....
T Consensus 221 D-LSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat 299 (544)
T KOG0124|consen 221 D-LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPAT 299 (544)
T ss_pred C-ccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCC
Confidence 5 9999999999999999999998844 899999999999999999999999999999999876544330
Q ss_pred CCCC-------------------------cccccc-----CCCCCCCcc---------hhccc-----------------
Q 013749 324 QGAD-------------------------THEYMN-----SNLNRFNRN---------AAKNY----------------- 347 (437)
Q Consensus 324 ~~~~-------------------------~~~~~~-----~~~~~~~~~---------~~~~~----------------- 347 (437)
.+.. .....+ ++..+...+ ...+.
T Consensus 300 ~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i 379 (544)
T KOG0124|consen 300 VSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTI 379 (544)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccC
Confidence 0000 000000 000000000 00000
Q ss_pred ----------------------------------------------------------c--ccCCCcceEEecCC--CCC
Q 013749 348 ----------------------------------------------------------R--YCCSPTKMIHLSTL--PQD 365 (437)
Q Consensus 348 ----------------------------------------------------------~--~~~~~~~~l~v~nl--p~~ 365 (437)
. -+...++++.++|. |.+
T Consensus 380 ~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~D 459 (544)
T KOG0124|consen 380 PPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKD 459 (544)
T ss_pred CCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhh
Confidence 0 01123578889998 556
Q ss_pred CC---HHHHHHhhhccCCeeEEEEEeeCCce--------EEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 366 VT---EEEIVSHLEEHGSIVNTKLFEMNGKK--------QALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 366 ~t---~~~l~~~f~~~G~v~~~~i~~~~~~~--------~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
++ +.+|++.|+.||.|.++.|+..+..+ .-||+|....++.+|.+.|+|..+.||++..+.
T Consensus 460 iDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 460 IDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred hhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhh
Confidence 66 57999999999999999998764422 689999999999999999999999999987764
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=7.5e-25 Score=193.53 Aligned_cols=284 Identities=23% Similarity=0.270 Sum_probs=220.9
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-CC-eEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccccc
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KN-QALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT 84 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-~~-~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~ 84 (437)
.++|.++-..+|-+-|.++|++||.|..|.-+.. .+ .|.|.|.+.+.|+.|...|.+..+.-+.+.|+|.||+.....
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 4578999999999999999999999988877754 34 499999999999999999999877777778999998765444
Q ss_pred ccccCCCCCC--------------------------------------------------CCCCcEEEEEEeCcC-CCCC
Q 013749 85 TMEQNAQGRG--------------------------------------------------DEPNRILLVTIHHML-YPIT 113 (437)
Q Consensus 85 ~~~~~~~~~~--------------------------------------------------~~~~~~~~v~v~nl~-~~~~ 113 (437)
.+..++.+|+ ..++....|.|.||- ..+|
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 4333321110 011112446677775 7889
Q ss_pred HHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCcc
Q 013749 114 VEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT 193 (437)
Q Consensus 114 ~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (437)
.+.|..+|+-||.|.+|.++.+.+.. |+|++.+...|+.|++.|+|..++| ++|++.++++..++...+.++.++++
T Consensus 312 ~d~LftlFgvYGdVqRVkil~nkkd~-ALIQmsd~~qAqLA~~hL~g~~l~g--k~lrvt~SKH~~vqlp~egq~d~glT 388 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKILYNKKDN-ALIQMSDGQQAQLAMEHLEGHKLYG--KKLRVTLSKHTNVQLPREGQEDQGLT 388 (492)
T ss_pred hhHHHHHHhhhcceEEEEeeecCCcc-eeeeecchhHHHHHHHHhhcceecC--ceEEEeeccCccccCCCCCCcccccc
Confidence 99999999999999999999776664 9999999999999999999999998 78999999999999998887777776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCe-
Q 013749 194 NPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI- 272 (437)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v- 272 (437)
.+.....-.+.. .|| +...-. .-+++.+|+++|+|+ +++|++++++|..-|..
T Consensus 389 ~dy~~spLhrfk-kpg-----------------sKN~~n-------i~PpsatlHlsnip~-svsee~lk~~f~~~g~~v 442 (492)
T KOG1190|consen 389 KDYGNSPLHRFK-KPG-----------------SKNYQN-------IFPPSATLHLSNIPP-SVSEEDLKNLFQEPGGQV 442 (492)
T ss_pred ccCCCCchhhcc-Ccc-----------------cccccc-------cCCchhheeeccCCc-ccchhHHHHhhhcCCceE
Confidence 654332221110 000 000001 123445899999999 79999999999998875
Q ss_pred EEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCc-EEEEEEccC
Q 013749 273 IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK-RLEVNFSKH 319 (437)
Q Consensus 273 ~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~~~~ 319 (437)
...+.....+.++++++.+.++|..|+..+++..+++. .++|+|++.
T Consensus 443 kafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 443 KAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred EeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 55566665578999999999999999999999998766 999999874
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=1.8e-25 Score=205.56 Aligned_cols=304 Identities=18% Similarity=0.255 Sum_probs=202.1
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
|+||+-.|+...++.||.++|+.+|+|.+|+++.| +|.|||+|.+.+....|+. |.+. .+.|.+|.|+.+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGq--rllg~pv~vq~sE 256 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQ--RLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCC--cccCceeEecccH
Confidence 67888889999999999999999999999999977 4999999999999999995 6666 7999999999754
Q ss_pred cccccccccCCCCCCCC-CCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHH
Q 013749 80 HQELTTMEQNAQGRGDE-PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVV 153 (437)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~ 153 (437)
..........+...... ..+..++||+||-++++++.|+.+|.+||.|+.|.+. +.++|| +||+|.+.++|.+
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgf-Gfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGF-GFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCc-ceEEEecHHHHHH
Confidence 43222111111111111 2222238999999999999999999999999998764 678998 9999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCc-cCCCCCCCCCC--CC---CCCCCCCCCCCCcccchh----
Q 013749 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF-TNPNLPAEQKG--RP---SQSGYSEAGVAFPQMANA---- 223 (437)
Q Consensus 154 A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~---- 223 (437)
|+..|||-.+-|+.+.+.+-.-+.+.-.. .......|- ....++.+... +. -.++. +..++..+..
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~~~~~a-~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~---~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERVDTKEA-AVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGK---GRSLPSTAISALLL 411 (549)
T ss_pred HHHHhccceecCceEEEEEeeeecccccc-cccccccchhhccccccccccHHHHHHHHhccC---CccccchhhhHHHh
Confidence 99999997777765554332221111000 000000010 00011100000 00 00000 0001100000
Q ss_pred ----hhhhhhcC---------CCCCCCCCCCCCccEEEEecCCCCCCCH----------HHHHHHHhccCCeEEEEEecC
Q 013749 224 ----AAIAAAFG---------GGLPPGITGTNDRCTVLVSNLNSDRIDE----------DKLFNLFSLYGNIIRIKLLRN 280 (437)
Q Consensus 224 ----~~~~~~~~---------~~~~~~~~~~~~~~~l~V~nl~~~~~t~----------~~l~~~F~~~G~v~~v~i~~~ 280 (437)
...+.-.+ ..+.|++. .++.|+.++|+-. ..|+ +++.+.+++||.|.+|.+..+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~--i~t~C~lL~nMFd-pstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n 488 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFD--IPTQCLLLSNMFD-PSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN 488 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccC--CccHHHHHhhcCC-cccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC
Confidence 00000011 11111221 4556788887753 2222 388899999999999999887
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 281 KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 281 ~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
.-|+.||.|.+.+.|..|+..|||.+|.|+-|...|-...
T Consensus 489 s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 489 SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 6799999999999999999999999999999999986644
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=2.9e-25 Score=187.84 Aligned_cols=147 Identities=24% Similarity=0.444 Sum_probs=137.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCC
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 325 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 325 (437)
.|||+|||. .+++.+|+.+|++||.|..|.|+++ ||||..++...|..|+++|+|-.|.|..|.|+-++.++
T Consensus 4 KLFIGNLp~-~~~~~elr~lFe~ygkVlECDIvKN---YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 4 KLFIGNLPR-EATEQELRSLFEQYGKVLECDIVKN---YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred chhccCCCc-ccchHHHHHHHHhhCceEeeeeecc---cceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 699999997 6999999999999999999999977 99999999999999999999999999999999877542
Q ss_pred CCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHH
Q 013749 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A 405 (437)
.++.+|+|+||.+.++-+||+..|++||.|++++|. ++|+||.|...++|
T Consensus 76 --------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda 125 (346)
T KOG0109|consen 76 --------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDA 125 (346)
T ss_pred --------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccch
Confidence 234679999999999999999999999999999996 88999999999999
Q ss_pred HHHHHHhCCCccCCcEEEEEeccCc
Q 013749 406 TEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 406 ~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
..|++.|+|.++.|++++|++|+++
T Consensus 126 ~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999875
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=1.4e-24 Score=171.48 Aligned_cols=162 Identities=18% Similarity=0.337 Sum_probs=140.9
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
..+|||+||+. .++++.|+++|-+.|+|.++++.++. +||||++|.+.++|+.|++.||...+.|++|+|..+.
T Consensus 9 d~tiyvgnld~-kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDE-KVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCH-HHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34999999998 79999999999999999999998865 8999999999999999999999999999999998766
Q ss_pred CCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeE-EEEEeeC----Cce
Q 013749 319 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKLFEMN----GKK 393 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~~----~~~ 393 (437)
... +| ..-+..|+|+||.++++|..|.+.|+.||.+.+ -+++++. .++
T Consensus 88 ~~~-----------------------~n----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~ 140 (203)
T KOG0131|consen 88 AHQ-----------------------KN----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKG 140 (203)
T ss_pred ccc-----------------------cc----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCC
Confidence 221 00 011356999999999999999999999999976 3666542 377
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 394 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
+|||.|++.|.+.+|+.+|||..+..+++.|+++..+..+
T Consensus 141 ~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 141 FGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999999999999877654
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.7e-24 Score=184.09 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=125.6
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEE------ccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVML------RAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~------~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
+.|||+.|..+..|+.||..|.+||+|.+|.+- +.||||||+|+=+|.|+-|++.+|+. .++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr-- 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR-- 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC--
Confidence 568999999999999999999999999998875 44799999999999999999999998 99999999983
Q ss_pred cccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHH
Q 013749 80 HQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVA 154 (437)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A 154 (437)
+..+.....--..-........+|||..+.++++++||...|.-||+|..|.+- +.++|| +|++|.+...-..|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGy-GfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccce-eeEEeccccchHHH
Confidence 111100000000000123455679999999999999999999999999999875 667898 99999999999999
Q ss_pred HHHcCCCCCCC
Q 013749 155 RSSLQGRNIYD 165 (437)
Q Consensus 155 ~~~l~~~~~~~ 165 (437)
+..||--.+.|
T Consensus 269 iasMNlFDLGG 279 (544)
T KOG0124|consen 269 IASMNLFDLGG 279 (544)
T ss_pred hhhcchhhccc
Confidence 99988655544
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=8.8e-24 Score=194.43 Aligned_cols=277 Identities=21% Similarity=0.268 Sum_probs=194.9
Q ss_pred EEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 103 v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
+|+--++-..++.+|+++|+.+|.|.+|.+. ++++|. |||+|.+.+....|+ .|.|+.+.|. +|.+..+..
T Consensus 182 vf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi-~Yvef~D~~sVp~ai-aLsGqrllg~--pv~vq~sEa 257 (549)
T KOG0147|consen 182 VFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGI-AYVEFCDEQSVPLAI-ALSGQRLLGV--PVIVQLSEA 257 (549)
T ss_pred HHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcce-eEEEEecccchhhHh-hhcCCcccCc--eeEecccHH
Confidence 5666667788899999999999999998776 567887 999999999999999 7899998874 444433321
Q ss_pred CcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCC
Q 013749 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRI 257 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~ 257 (437)
.... . .. .+++.++ .....+...|||+||-+ ++
T Consensus 258 eknr---------~--a~------------------------------~s~a~~~-----k~~~~p~~rl~vgnLHf-Ni 290 (549)
T KOG0147|consen 258 EKNR---------A--AN------------------------------ASPALQG-----KGFTGPMRRLYVGNLHF-NI 290 (549)
T ss_pred HHHH---------H--Hh------------------------------ccccccc-----cccccchhhhhhccccc-Cc
Confidence 1000 0 00 0000000 00011111399999999 89
Q ss_pred CHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCC--Cccc
Q 013749 258 DEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGA--DTHE 330 (437)
Q Consensus 258 t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~--~~~~ 330 (437)
++++|+.+|++||.|..|.+..+. +||+||+|.+.++|.+|+..|||+.+.|+.|+|............ ...+
T Consensus 291 te~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d 370 (549)
T KOG0147|consen 291 TEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFD 370 (549)
T ss_pred hHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccc
Confidence 999999999999999999988863 899999999999999999999999999999999876543331111 0000
Q ss_pred cc-----cCCCC-----------------CC--------------Ccchhcc------ccccC-------CCcceEEecC
Q 013749 331 YM-----NSNLN-----------------RF--------------NRNAAKN------YRYCC-------SPTKMIHLST 361 (437)
Q Consensus 331 ~~-----~~~~~-----------------~~--------------~~~~~~~------~~~~~-------~~~~~l~v~n 361 (437)
+. +-+.. .. .....-+ ..... .|+.++.++|
T Consensus 371 ~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~n 450 (549)
T KOG0147|consen 371 FDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSN 450 (549)
T ss_pred cchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhh
Confidence 00 00000 00 0000000 00011 4567788888
Q ss_pred C--CCCCC--------HHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 362 L--PQDVT--------EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 362 l--p~~~t--------~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
+ |.+.| .+|+.+.|+.||+|..|-+-.+ .-|+.||.|.+.+.|..|+..|||.++.|+.|...|-....
T Consensus 451 MFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 451 MFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLER 529 (549)
T ss_pred cCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhh
Confidence 8 43433 3788899999999988887542 24999999999999999999999999999999999865443
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.91 E-value=1.8e-21 Score=176.85 Aligned_cols=393 Identities=17% Similarity=0.203 Sum_probs=236.9
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
....|-+++||+++|++||+++|+-++ |+++.+.+. .|-|||+|.+.+++++|++. +.. .+..+-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~--~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRE--SMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHH--HhCCceEEEEccC
Confidence 456788999999999999999999885 778777765 38899999999999999994 323 6888999999887
Q ss_pred cccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeE-EEEE----eeCCccEEEEEecChhHHHHH
Q 013749 80 HQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK-IVTF----QKSAGFQALIQYQLRPSAVVA 154 (437)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-i~~~----~~~~g~~afV~f~~~~~A~~A 154 (437)
..+..+...+....+.....+ |.+++||+.||++||.++|+..-.+.. |.++ .++.| +|||+|++++.|+.|
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~v--VRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tG-EAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGV--VRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTG-EAFVQFESQESAEIA 161 (510)
T ss_pred CccccccccCCCCCCCCCCce--EEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCccc-ceEEEecCHHHHHHH
Confidence 777665555544444445555 778999999999999999999876666 4443 45566 499999999999999
Q ss_pred HHHcCCCCCCCCCceEEEEEecCCcceeeecC-----CcccCccCCCCCCC------------CCCC-----------CC
Q 013749 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNN-----ERSRDFTNPNLPAE------------QKGR-----------PS 206 (437)
Q Consensus 155 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------------~~~~-----------~~ 206 (437)
++.-+ ..| +..-+.|..+...++...... .....|..+.-+.. .... .+
T Consensus 162 l~rhr-e~i--GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~ 238 (510)
T KOG4211|consen 162 LGRHR-ENI--GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSR 238 (510)
T ss_pred HHHHH-Hhh--ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccccc
Confidence 97632 233 223345544443332221100 00011111100000 0000 00
Q ss_pred CCCCC---CCCCCCcccchhhhhhhhcCC---CCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec-
Q 013749 207 QSGYS---EAGVAFPQMANAAAIAAAFGG---GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR- 279 (437)
Q Consensus 207 ~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~- 279 (437)
.+.+. ..+...... ....+....+. ..............++.++||. ..++.++.++|+..-.+ .|++-.
T Consensus 239 ~~~~~d~~~~gs~~~~~-~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy-~a~~~di~nfFspl~p~-~v~i~ig 315 (510)
T KOG4211|consen 239 YPSLQDYGNFGSYGGGR-DPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPY-DATENDIANFFSPLNPY-RVHIEIG 315 (510)
T ss_pred Ccccccccccccccccc-ccccCCCCCcccCCCcccccCCCCCCceeeecCCCc-cCCCcchhhhcCCCCce-eEEEEeC
Confidence 00000 000000000 00000000000 0000001122226899999999 59999999999998776 444433
Q ss_pred -CC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCcc---cc----------------------
Q 013749 280 -NK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTH---EY---------------------- 331 (437)
Q Consensus 280 -~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~---~~---------------------- 331 (437)
+. .|-|+|+|.+.++|..|+. -++..+..+-+.+-..-...-..+.... .+
T Consensus 316 ~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~ 394 (510)
T KOG4211|consen 316 PDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGN 394 (510)
T ss_pred CCCccCCcceeecccchhhHhhhc-cCCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCC
Confidence 33 7899999999999999988 6888888887777553222110000000 00
Q ss_pred --------ccCCCCCCCcchhccc-------cccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ce
Q 013749 332 --------MNSNLNRFNRNAAKNY-------RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KK 393 (437)
Q Consensus 332 --------~~~~~~~~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~ 393 (437)
.+.+.........-.+ ......-.+|..+.+|...++.++.++|.+++.- .+.+..++. .+
T Consensus 395 g~~~~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~~a-~~~~~yd~~~~~~~ 473 (510)
T KOG4211|consen 395 GGGGRGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIRPA-QVELLYDHQFQRSG 473 (510)
T ss_pred CCccccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccCcc-cccccccccccccC
Confidence 0000000000000000 0001122578899999999999999999988764 344444322 56
Q ss_pred EEEEEecCHHHHHHHHHH
Q 013749 394 QALVLFETEEQATEALVC 411 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~ 411 (437)
.|-|.|.+.++++.|++.
T Consensus 474 ~a~~~~~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 474 DARVIFYNRKDYQDALMK 491 (510)
T ss_pred ceeEEEechhhhHHHHHh
Confidence 899999999999999854
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=7.5e-23 Score=171.02 Aligned_cols=81 Identities=19% Similarity=0.414 Sum_probs=75.3
Q ss_pred CCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 013749 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314 (437)
Q Consensus 240 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 314 (437)
..+++|.|||..||.| ..+.||..+|-.||.|.+.+++-|+ ++|+||.|+|+.+|+.||..|||+.|+.++|+|
T Consensus 281 eGPeGCNlFIYHLPQE-FgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQE-FGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeCchh-hccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 4678899999999995 9999999999999999999998865 899999999999999999999999999999999
Q ss_pred EEccCCC
Q 013749 315 NFSKHPN 321 (437)
Q Consensus 315 ~~~~~~~ 321 (437)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9988764
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.3e-22 Score=169.53 Aligned_cols=190 Identities=22% Similarity=0.340 Sum_probs=148.4
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCce-eCCc--EEEEE
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGAL-LFGK--RLEVN 315 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v~ 315 (437)
+.+.|||+-|.. .-+|||++.+|..||.|.+|.+++.. +||+||+|.+..+|..||..|+|.. +.|- .|.|.
T Consensus 18 ~drklfvgml~k-qq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNK-QQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcc-cccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 445899999997 79999999999999999999999843 8999999999999999999999944 4553 78999
Q ss_pred EccCCCCCC-----------C---CCccc-------------------------ccc-----------------------
Q 013749 316 FSKHPNITQ-----------G---ADTHE-------------------------YMN----------------------- 333 (437)
Q Consensus 316 ~~~~~~~~~-----------~---~~~~~-------------------------~~~----------------------- 333 (437)
|+.....+. + +..-. |..
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 987665511 0 00000 000
Q ss_pred CCCC-----------------CCCcchhcc-c------------------------------------------------
Q 013749 334 SNLN-----------------RFNRNAAKN-Y------------------------------------------------ 347 (437)
Q Consensus 334 ~~~~-----------------~~~~~~~~~-~------------------------------------------------ 347 (437)
.+.. ....+..-| +
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000 000000000 0
Q ss_pred ----------------------cccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee----CCceEEEEEecC
Q 013749 348 ----------------------RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFET 401 (437)
Q Consensus 348 ----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~~~~~afV~f~~ 401 (437)
....|.+|+|||.+||.+..+.||.++|-+||.|++.+++-| ..||||||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 344567899999999999999999999999999999999855 459999999999
Q ss_pred HHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 402 EEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 402 ~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
+.+|+.||..|||+.|+-++|+|.+.+++...
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99999999999999999999999999998753
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=2.7e-22 Score=169.93 Aligned_cols=145 Identities=19% Similarity=0.300 Sum_probs=129.9
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccccccc
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~ 86 (437)
.|||+|||.++++.+|+.+|++||+|++|-|+++ ||||..++...|..|+..||++ .++|..|.|+-|+.+...
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--YgFVHiEdktaaedairNLhgY--tLhg~nInVeaSksKsk~-- 77 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--YGFVHIEDKTAAEDAIRNLHGY--TLHGVNINVEASKSKSKA-- 77 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--cceEEeecccccHHHHhhcccc--eecceEEEEEeccccCCC--
Confidence 5899999999999999999999999999999987 8999999999999999999999 999999999987776322
Q ss_pred ccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCC
Q 013749 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166 (437)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~ 166 (437)
+..++|+||.+.++.+||+..|.+||+|..+.+. +++ +||+|...++|..|++.|++..+.|.
T Consensus 78 -------------stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy-~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 78 -------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDY-AFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred -------------ccccccCCCCccccCHHHhhhhcccCCceeeeee---cce-eEEEEeeccchHHHHhcccccccccc
Confidence 1228999999999999999999999999999887 465 99999999999999999999999885
Q ss_pred CceEEEEEec
Q 013749 167 CCQLDIQFSN 176 (437)
Q Consensus 167 ~~~l~~~~~~ 176 (437)
+++|+.+.
T Consensus 141 --~m~vq~st 148 (346)
T KOG0109|consen 141 --RMHVQLST 148 (346)
T ss_pred --eeeeeeec
Confidence 45555554
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=8.5e-22 Score=155.77 Aligned_cols=155 Identities=17% Similarity=0.254 Sum_probs=131.2
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
..+|||+||+..++++-|.++|-+.|+|+++.+.+|+ ||||++|.+.|+|.=|++-|+.. .+-|++|+|..+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~V--kLYgrpIrv~ka 86 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMV--KLYGRPIRVNKA 86 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHH--HhcCceeEEEec
Confidence 4689999999999999999999999999999999874 99999999999999999999966 899999999986
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEE---E---EEeeCCccEEEEEecChhHHH
Q 013749 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKI---V---TFQKSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i---~---~~~~~~g~~afV~f~~~~~A~ 152 (437)
........ ..-.+||+||.+.+++..|++.|+.||.+.+. . ..++++|+ +||-|.+.+.+.
T Consensus 87 s~~~~nl~------------vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~-g~i~~~sfeasd 153 (203)
T KOG0131|consen 87 SAHQKNLD------------VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGF-GFINYASFEASD 153 (203)
T ss_pred cccccccc------------ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCC-eEEechhHHHHH
Confidence 62211111 11348999999999999999999999998762 2 12677788 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEec
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSN 176 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~ 176 (437)
+|+..|+|+.+..+. +.+.++.
T Consensus 154 ~ai~s~ngq~l~nr~--itv~ya~ 175 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRP--ITVSYAF 175 (203)
T ss_pred HHHHHhccchhcCCc--eEEEEEE
Confidence 999999999997754 4565554
No 46
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.86 E-value=3.6e-19 Score=155.91 Aligned_cols=280 Identities=17% Similarity=0.220 Sum_probs=203.3
Q ss_pred CcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 98 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
..+..|-|++|-..+++.+|.+..+.||+|.-+.+.+.++ +|.|+|++.+-|..++..--...++.....--..|+..
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc--eeeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 3344588999999999999999999999999888877765 59999999999999886544434433222222222211
Q ss_pred CcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEe--cCCCC
Q 013749 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVS--NLNSD 255 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~--nl~~~ 255 (437)
....++. .....++..|.+. |--.
T Consensus 107 ------------q~i~R~g-----------------------------------------~es~~pN~VLl~TIlNp~Y- 132 (494)
T KOG1456|consen 107 ------------QCIERPG-----------------------------------------DESATPNKVLLFTILNPQY- 132 (494)
T ss_pred ------------hhhccCC-----------------------------------------CCCCCCCeEEEEEeecCcc-
Confidence 1111111 1112222244444 4444
Q ss_pred CCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCc--EEEEEEccCCCC---CCCCCccc
Q 013749 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK--RLEVNFSKHPNI---TQGADTHE 330 (437)
Q Consensus 256 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~~~~~~~---~~~~~~~~ 330 (437)
.+|.+-|+.++...|.|.+|-|++...-.|.|+|++.+.|++|...|||..+.-. .|+++|+++... ....+..|
T Consensus 133 pItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwD 212 (494)
T KOG1456|consen 133 PITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWD 212 (494)
T ss_pred ccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCcccc
Confidence 6899999999999999999988886455899999999999999999999988543 899999998766 22333355
Q ss_pred cccCCCCCCCcchhccc-------------------------------------------c--------ccCCCcceEEe
Q 013749 331 YMNSNLNRFNRNAAKNY-------------------------------------------R--------YCCSPTKMIHL 359 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~~~-------------------------------------------~--------~~~~~~~~l~v 359 (437)
|+...+++...++.-.+ + .-.++++++.|
T Consensus 213 yTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMV 292 (494)
T KOG1456|consen 213 YTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMV 292 (494)
T ss_pred ccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEE
Confidence 55433321110000000 0 11235789999
Q ss_pred cCCCC-CCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccccc
Q 013749 360 STLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 434 (437)
Q Consensus 360 ~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~ 434 (437)
.+|+. +++-+.|-.+|-.||.|.+|++++. -.|.|+|++.+..+.++|+..||+..+.|.+|.|.+|+...+..
T Consensus 293 yGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~ 367 (494)
T KOG1456|consen 293 YGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSP 367 (494)
T ss_pred EeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccccc
Confidence 99976 6788999999999999999999863 36799999999999999999999999999999999998765543
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=3.1e-20 Score=153.33 Aligned_cols=184 Identities=21% Similarity=0.345 Sum_probs=146.0
Q ss_pred CccEEEEecCCCCCCCHHHHHH----HHhccCCeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFN----LFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~----~F~~~G~v~~v~i~~~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 316 (437)
++.||||.||.. .+..++|+. +|++||.|..|..++.. +|.|||.|.+.+.|..|+..|+|+.|.|+.++++|
T Consensus 8 pn~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 334999999996 799998877 99999999999888644 89999999999999999999999999999999999
Q ss_pred ccCCCCCCCC----Ccccccc---CCCCCCCcchhccc---------------cccCCCcceEEecCCCCCCCHHHHHHh
Q 013749 317 SKHPNITQGA----DTHEYMN---SNLNRFNRNAAKNY---------------RYCCSPTKMIHLSTLPQDVTEEEIVSH 374 (437)
Q Consensus 317 ~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~ 374 (437)
++.++..... ....... ....+...+...+. ....+|...+++.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 9987762111 0000000 00000000000000 123577899999999999999999999
Q ss_pred hhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC-CcEEEEEecc
Q 013749 375 LEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 428 (437)
Q Consensus 375 f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~s~ 428 (437)
|.+|.....+++++. -++.|||+|.+...|..|.+.++|..|. ...+.+.|++
T Consensus 167 f~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999862 4779999999999999999999999998 9999999975
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2e-18 Score=136.78 Aligned_cols=166 Identities=22% Similarity=0.267 Sum_probs=128.6
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
..++|||+|||.| +-+.+|.++|.+||.|..|.+-... .+||||+|+++.+|..|+..-+|..+.|.+|+|++++..
T Consensus 5 ~~~~iyvGNLP~d-iRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGD-IREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcc-hhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3468999999995 9999999999999999988775533 679999999999999999999999999999999998865
Q ss_pred CCCCCCCccccccCCCCCCCcchhccccccCCC----cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEE
Q 013749 321 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSP----TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 396 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~af 396 (437)
... ...-..|++-...... .. ....+| ...|.|++||++.+|+||++.+.+.|.|+...+.+ -+++.
T Consensus 84 r~s-~~~~G~y~gggrgGgg-~g----g~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r---Dg~Gv 154 (241)
T KOG0105|consen 84 RSS-SDRRGSYSGGGRGGGG-GG----GRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR---DGVGV 154 (241)
T ss_pred Ccc-cccccccCCCCCCCCC-CC----cccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec---cccee
Confidence 320 0000011110000000 00 011222 24688999999999999999999999999999975 45899
Q ss_pred EEecCHHHHHHHHHHhCCCccC
Q 013749 397 VLFETEEQATEALVCKHASSLG 418 (437)
Q Consensus 397 V~f~~~~~A~~A~~~l~~~~~~ 418 (437)
|+|.+.|+.+-|+..|....+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeehhhHHHHHHhhcccccc
Confidence 9999999999999999887664
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.9e-18 Score=161.85 Aligned_cols=280 Identities=15% Similarity=0.233 Sum_probs=190.9
Q ss_pred cEEEEEEeCcCCCCCHHHHHHhcCCC-----------Cc-eeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCC
Q 013749 99 RILLVTIHHMLYPITVEVLHQVFSPH-----------GF-VEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166 (437)
Q Consensus 99 ~~~~v~v~nl~~~~~~~~l~~~f~~~-----------G~-i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~ 166 (437)
+-.+++|+++|..++++....+|..- |+ +..+.+ ...+++ ||++|.+.++|..++ .+++..+.|.
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nf-a~ie~~s~~~at~~~-~~~~~~f~g~ 250 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNF-AFIEFRSISEATEAM-ALDGIIFEGR 250 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccc-eeEEecCCCchhhhh-cccchhhCCC
Confidence 33458999999999999999888653 22 333333 445677 999999999999998 4667666554
Q ss_pred CceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccE
Q 013749 167 CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCT 246 (437)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
...+.... +|... +..- .........+ ..+...........
T Consensus 251 ~~~~~r~~----------------d~~~~--p~~~--------------------~~~~~~~~~~-~~~~~t~~~~~~~k 291 (500)
T KOG0120|consen 251 PLKIRRPH----------------DYQPV--PGIT--------------------LSPSQLGKVG-LLPASTDVPDSPNK 291 (500)
T ss_pred Cceecccc----------------cccCC--ccch--------------------hhhccccccC-CcccccCcccccch
Confidence 32222111 11000 0000 0000000000 00000111233357
Q ss_pred EEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 247 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 247 l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
++|++||. ..+++++.++...||++....++.+. +||||.+|.++.....|+..|||..++++.|.|+.+-...
T Consensus 292 i~v~~lp~-~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 292 IFVGGLPL-YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhhccCcC-ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999998 89999999999999999988887754 8999999999999999999999999999999999887655
Q ss_pred CCCCCCccccccCCCCCCCcchhccc--cccCCCcceEEecCC--CCCCC--------HHHHHHhhhccCCeeEEEEEee
Q 013749 322 ITQGADTHEYMNSNLNRFNRNAAKNY--RYCCSPTKMIHLSTL--PQDVT--------EEEIVSHLEEHGSIVNTKLFEM 389 (437)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~i~~~ 389 (437)
........ .......+.... +....|+.+|++.|+ |.++. -++++.-|+.||.|.+|.++..
T Consensus 371 ~~~~~~~~------~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 371 SNANVNFN------ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhccccCC------ccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 42222211 000011111111 224456788888887 33332 1677778899999999999854
Q ss_pred -------CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 390 -------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 390 -------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.|-|..||+|++.++|++|+.+|+|.++.||.+..+|-
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 24679999999999999999999999999999998874
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.76 E-value=3e-17 Score=134.16 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=128.1
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec-CC-----CCeEEEEeCCHHHHHHHHHHhcCceeC---CcEEEE
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR-NK-----PDHALVQMGDGFQAELAVHFLKGALLF---GKRLEV 314 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 314 (437)
.+||||++||.| +...||+.+|..|-..+.+.+-. ++ +.+||+.|.+..+|..|++.|||..|+ +..|++
T Consensus 34 VRTLFVSGLP~D-vKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPND-VKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred cceeeeccCCcc-cCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999985 99999999999998877765543 22 359999999999999999999999984 668999
Q ss_pred EEccCCCCCCCCC------c-cccccCC--CCCCCcchhc------c-c-------------------------------
Q 013749 315 NFSKHPNITQGAD------T-HEYMNSN--LNRFNRNAAK------N-Y------------------------------- 347 (437)
Q Consensus 315 ~~~~~~~~~~~~~------~-~~~~~~~--~~~~~~~~~~------~-~------------------------------- 347 (437)
++++...-..... + ..+.... ...+.+.... + +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9988655411100 0 0000000 0000000000 0 0
Q ss_pred -----------cccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCc
Q 013749 348 -----------RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 416 (437)
Q Consensus 348 -----------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~ 416 (437)
........||||-||..+|+|++|+.+|+.|.....++|-...|.+.||++|.+.+.|-.||..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 001112468999999999999999999999999988888766678899999999999999999999988
Q ss_pred cC
Q 013749 417 LG 418 (437)
Q Consensus 417 ~~ 418 (437)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 75
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.76 E-value=6.3e-17 Score=133.85 Aligned_cols=202 Identities=19% Similarity=0.232 Sum_probs=141.7
Q ss_pred EEEEeCcCCCCCHHHHHH----hcCCCCceeEEEEE--eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEe
Q 013749 102 LVTIHHMLYPITVEVLHQ----VFSPHGFVEKIVTF--QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~----~f~~~G~i~~i~~~--~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
+|||.||...+..++|+. +|+.||.|.+|..+ .+.+|- |||.|.+.+.|..|+..|+|-.++|. +++++||
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQ-A~VvFk~~~~As~A~r~l~gfpFygK--~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQ-AFVVFKETEAASAALRALQGFPFYGK--PMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCc-eEEEecChhHHHHHHHHhcCCcccCc--hhheecc
Confidence 499999999999999887 99999999999876 677885 99999999999999999999999995 6689999
Q ss_pred cCCcceeeecCCcccCccCCCCCCCCCC-CCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCC
Q 013749 176 NLDELQVNYNNERSRDFTNPNLPAEQKG-RPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS 254 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 254 (437)
+...-.+...... --+..+..+..... .++.+...+....++.+..+.+. + ....++..++++.|+|.
T Consensus 88 ~s~sdii~~~~~~-~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~---------~-~~~~ppn~ilf~~niP~ 156 (221)
T KOG4206|consen 88 KSDSDIIAQAPGT-FVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF---------L-AQMAPPNNILFLTNIPS 156 (221)
T ss_pred cCccchhhccCce-eccccCccccccccccCCcccccccccccccccCCCCc---------c-ccCCCCceEEEEecCCc
Confidence 8654322221100 00000000000000 00000000000000000000000 0 22345666999999998
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEEcc
Q 013749 255 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF-GKRLEVNFSK 318 (437)
Q Consensus 255 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 318 (437)
.++.+.+..+|.+|.....++++...++.|||+|.+...|..|.+.++|..+- ...+.+.+++
T Consensus 157 -es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 157 -ESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred -chhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 49999999999999999999999988999999999999999999999999885 7788887764
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=2.7e-17 Score=134.41 Aligned_cols=210 Identities=20% Similarity=0.231 Sum_probs=132.8
Q ss_pred CCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCc-----cEEEEEecChhHHHHHHHHcCCCCCCCC-Cce
Q 013749 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAG-----FQALIQYQLRPSAVVARSSLQGRNIYDG-CCQ 169 (437)
Q Consensus 96 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g-----~~afV~f~~~~~A~~A~~~l~~~~~~~~-~~~ 169 (437)
.+..+.++||.+||.++...+|+.+|..|---+...+--.+++ ..||+.|.+..+|..|+..|||..|.-. ..+
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 4566788999999999999999999999876666544322222 3499999999999999999999988654 478
Q ss_pred EEEEEecCCcceeeecCCcccCccCCCCCCCC---CCC-----------CCCCCCCCCCC--CCc--c------cch-h-
Q 013749 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQ---KGR-----------PSQSGYSEAGV--AFP--Q------MAN-A- 223 (437)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~--~~~--~------~~~-~- 223 (437)
|++++++...-........... ..+.++... .++ ...-.+...+. .++ . ... .
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~-~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPG-SSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eEeeehhcCcccccCCCCCCCC-CCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 8999987532211111100000 000000000 000 00000000000 000 0 000 0
Q ss_pred -hhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec-CCCCeEEEEeCCHHHHHHHHHH
Q 013749 224 -AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR-NKPDHALVQMGDGFQAELAVHF 301 (437)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~~g~~fV~f~~~~~A~~A~~~ 301 (437)
.+.+.+..+-..++.++..-+.||||.||.+ +++|++|+.+|+.|......++.. +..+.||++|.+.+.|..|+..
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~-~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGP-NCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCC-CCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHH
Confidence 0111112222233334556678999999999 799999999999999877666654 3367899999999999999999
Q ss_pred hcCcee
Q 013749 302 LKGALL 307 (437)
Q Consensus 302 l~g~~~ 307 (437)
|+|..+
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 999776
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.5e-16 Score=125.01 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=124.0
Q ss_pred EEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeC--CccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCC
Q 013749 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKS--AGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178 (437)
Q Consensus 101 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~--~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~ 178 (437)
.+|||+|||.++-+.+|+++|.+||.|..|.+.... -.| |||+|+++.+|..|+..-+|..+.+ +.|+|+++.-.
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppf-afVeFEd~RDAeDAiygRdGYdydg--~rLRVEfprgg 83 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPF-AFVEFEDPRDAEDAIYGRDGYDYDG--CRLRVEFPRGG 83 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCe-eEEEecCccchhhhhhcccccccCc--ceEEEEeccCC
Confidence 459999999999999999999999999999886333 347 9999999999999999888888755 88999998632
Q ss_pred cceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCC
Q 013749 179 ELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRID 258 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t 258 (437)
.-. .+...+.. .... .+.++.+... +|+ ..+...+.|++||+ +.+
T Consensus 84 r~s---------~~~~G~y~--gggr---gGgg~gg~rg-----------------pps---rrSe~RVvVsGLp~-SgS 128 (241)
T KOG0105|consen 84 RSS---------SDRRGSYS--GGGR---GGGGGGGRRG-----------------PPS---RRSEYRVVVSGLPP-SGS 128 (241)
T ss_pred Ccc---------cccccccC--CCCC---CCCCCCcccC-----------------Ccc---cccceeEEEecCCC-CCc
Confidence 100 00000000 0000 0111111110 111 11223799999999 899
Q ss_pred HHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeC
Q 013749 259 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF 308 (437)
Q Consensus 259 ~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~ 308 (437)
+++|++++.+-|.|.-..+.++ +.+.|+|...++...|+..|....+.
T Consensus 129 WQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 129 WQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhcccccc
Confidence 9999999999999998888887 69999999999999999999987764
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=8.5e-17 Score=150.87 Aligned_cols=278 Identities=15% Similarity=0.234 Sum_probs=190.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCC-----------cc-ceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPF-----------GV-ITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR 69 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~-----------G~-i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~ 69 (437)
+...+.++|+++|..++|+.+..+|..- |+ +..+.+-..+++||++|.+.++|..|+. +++. .+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~--~f~ 248 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGI--IFE 248 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccch--hhC
Confidence 3455789999999999999999998532 44 7888888899999999999999999987 4444 577
Q ss_pred CeEEEEEecccc----ccc-ccc-----cCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----e
Q 013749 70 GRNVYVQFSSHQ----ELT-TME-----QNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----Q 134 (437)
Q Consensus 70 g~~l~v~~s~~~----~~~-~~~-----~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~ 134 (437)
|.++.+.--... .+. ... .........+.....++|++||..++++++.++...||++....++ +
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 777765521110 000 000 0111112233444558999999999999999999999998775544 5
Q ss_pred eCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCC
Q 013749 135 KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214 (437)
Q Consensus 135 ~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
.++|| ||.+|.++..+..|+..|||..+.+. +|.++.+-......+.+.+.+.. ..+.++...
T Consensus 329 ~skg~-af~ey~dpsvtd~A~agLnGm~lgd~--~lvvq~A~~g~~~~~~~~~~~~~-~~~~i~~~~------------- 391 (500)
T KOG0120|consen 329 NSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDK--KLVVQRAIVGASNANVNFNISQS-QVPGIPLLM------------- 391 (500)
T ss_pred cccce-eeeeeeCCcchhhhhcccchhhhcCc--eeEeehhhccchhccccCCcccc-ccccchhhh-------------
Confidence 78898 99999999999999999999988664 55555554333222221110000 001110000
Q ss_pred CCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCC--CCCCHH-------HHHHHHhccCCeEEEEEecC-C---
Q 013749 215 VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS--DRIDED-------KLFNLFSLYGNIIRIKLLRN-K--- 281 (437)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~--~~~t~~-------~l~~~F~~~G~v~~v~i~~~-~--- 281 (437)
-.....++..|++.|+=. +-..++ +++..|++||.|.+|.+.++ .
T Consensus 392 ----------------------~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~ 449 (500)
T KOG0120|consen 392 ----------------------TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDEN 449 (500)
T ss_pred ----------------------cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCC
Confidence 001122333566665532 111111 56667899999999998875 2
Q ss_pred ----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 282 ----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 282 ----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
-|..||+|.+.++++.|++.|+|..|.|+.+...|-....
T Consensus 450 ~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 450 PVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred cCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 6788999999999999999999999999999999865443
No 55
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.6e-17 Score=137.02 Aligned_cols=164 Identities=23% Similarity=0.307 Sum_probs=131.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCC
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 325 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 325 (437)
.+||++||. .+.+.+|..+|..||.+..+.+. .+|+||+|.+..+|..|+..+||..|+|..+.+.|++......+
T Consensus 3 rv~vg~~~~-~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 3 RVYIGRLPY-RARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred ceeecccCC-ccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 699999998 79999999999999999988664 46899999999999999999999999999999999886533221
Q ss_pred CCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHH
Q 013749 326 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 405 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A 405 (437)
.....+-. . ....+.......+.+.|.|++..+++++|.+.|.++|.+....+ ..+++||+|.+.++|
T Consensus 79 ~~~~g~r~-~-------~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 79 RPRGGDRR-S-------DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDA 146 (216)
T ss_pred CCCCCCcc-c-------hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhh
Confidence 11100000 0 01110011112367889999999999999999999999966555 478999999999999
Q ss_pred HHHHHHhCCCccCCcEEEEE
Q 013749 406 TEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 406 ~~A~~~l~~~~~~g~~l~v~ 425 (437)
.+|++.|+|..+.|++|.+.
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhcchhccchhhcCceeeec
Confidence 99999999999999999993
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=2.3e-16 Score=127.35 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=74.2
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+++|||+|||+.++|++|+++|++||.|.+++++.+. .++||||+|.+.++|++|++.||+..|.|+.|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 35789999999999999999999999999999998653 48899999999999999999999999999999999998
Q ss_pred Ccccc
Q 013749 429 LQSIR 433 (437)
Q Consensus 429 ~~~~~ 433 (437)
.+...
T Consensus 113 ~~~~~ 117 (144)
T PLN03134 113 DRPSA 117 (144)
T ss_pred cCCCC
Confidence 76543
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.69 E-value=2.6e-16 Score=140.80 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=131.8
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
-++.|||++|+++++|+.|+++|.+||+|.++.+++| ++|+||+|.+.+...+++.. .++.+.|+.|...-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc---cccccCCcccccee
Confidence 3678999999999999999999999999999999987 49999999999999999873 34479999999888
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~ 152 (437)
+.+.+...... ....+..|||++||.++++++++++|.+||.|..+.+. .+++|| +||.|.+.+.+.
T Consensus 82 av~r~~~~~~~-------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVd 153 (311)
T KOG4205|consen 82 AVSREDQTKVG-------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVD 153 (311)
T ss_pred ccCcccccccc-------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccc-eeeEeccccccc
Confidence 77654332221 11246669999999999999999999999988887654 667898 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEecCCcc
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSNLDEL 180 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~~~~~ 180 (437)
+++. ...+.+.+. .+.+..+.+.++
T Consensus 154 kv~~-~~f~~~~gk--~vevkrA~pk~~ 178 (311)
T KOG4205|consen 154 KVTL-QKFHDFNGK--KVEVKRAIPKEV 178 (311)
T ss_pred eecc-cceeeecCc--eeeEeeccchhh
Confidence 9984 466666664 446665654433
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.68 E-value=7.5e-15 Score=134.19 Aligned_cols=262 Identities=18% Similarity=0.205 Sum_probs=166.6
Q ss_pred CCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE---eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEE
Q 013749 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF---QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (437)
Q Consensus 97 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~---~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~ 173 (437)
......|.+.+||+.+|++||.++|+..+ |+.+.+. +++.|- |||+|.+.+++++|++. +-..+- ..-|.|-
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGe-A~Ve~~seedv~~Alkk-dR~~mg--~RYIEVf 81 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGE-AYVEFTSEEDVEKALKK-DRESMG--HRYIEVF 81 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcc-eEEEeechHHHHHHHHh-hHHHhC--CceEEEE
Confidence 34556689999999999999999999886 6665544 667785 99999999999999975 222221 2334554
Q ss_pred EecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCC
Q 013749 174 FSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLN 253 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 253 (437)
.+...++.... + +.-+ .......+|.+.+||
T Consensus 82 ~~~~~e~d~~~------~---~~g~----------------------------------------~s~~~d~vVRLRGLP 112 (510)
T KOG4211|consen 82 TAGGAEADWVM------R---PGGP----------------------------------------NSSANDGVVRLRGLP 112 (510)
T ss_pred ccCCccccccc------c---CCCC----------------------------------------CCCCCCceEEecCCC
Confidence 44322221100 0 0000 000112389999999
Q ss_pred CCCCCHHHHHHHHhccCCeEEEE-EecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCC-----
Q 013749 254 SDRIDEDKLFNLFSLYGNIIRIK-LLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT----- 323 (437)
Q Consensus 254 ~~~~t~~~l~~~F~~~G~v~~v~-i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~----- 323 (437)
+ .+|++||.++|+..-.|.... ++.+. .|.|||+|++.+.|++|+. -|...++.+-|.|-.+......
T Consensus 113 f-scte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~ 190 (510)
T KOG4211|consen 113 F-SCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAAGP 190 (510)
T ss_pred c-cCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhccc
Confidence 9 899999999999987666533 34343 6799999999999999998 5777788887877544322110
Q ss_pred -------CCCCc--------cccccCCC-----------------------------------------------CCCCc
Q 013749 324 -------QGADT--------HEYMNSNL-----------------------------------------------NRFNR 341 (437)
Q Consensus 324 -------~~~~~--------~~~~~~~~-----------------------------------------------~~~~~ 341 (437)
+++.. .+|..... .++..
T Consensus 191 ~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~ 270 (510)
T KOG4211|consen 191 GDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGG 270 (510)
T ss_pred cccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCC
Confidence 00000 00000000 00000
Q ss_pred chhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEE--ee-CCceEEEEEecCHHHHHHHHHHhCCCccC
Q 013749 342 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF--EM-NGKKQALVLFETEEQATEALVCKHASSLG 418 (437)
Q Consensus 342 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~--~~-~~~~~afV~f~~~~~A~~A~~~l~~~~~~ 418 (437)
... +....+.+..++.++||+..++.+|..+|+..-.+ .+.|- ++ +-.|-|+|+|.+.++|..|+ .-++..+.
T Consensus 271 ~g~--~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am-skd~anm~ 346 (510)
T KOG4211|consen 271 AGD--YGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM-GKDGANMG 346 (510)
T ss_pred ccc--ccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh-ccCCcccC
Confidence 000 01111223789999999999999999999986555 33332 22 22679999999999999997 44444333
No 59
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.68 E-value=1.8e-16 Score=141.80 Aligned_cols=168 Identities=15% Similarity=0.266 Sum_probs=140.4
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
+.+.|+|++|+. .++++.|++.|++||.|..|.++++. ++|+||+|++++....++. ..-..+.|+.|....+
T Consensus 5 ~~~KlfiGgisw-~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSW-ETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCc-cccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 456899999999 59999999999999999999999865 7899999999998888876 5667789999988877
Q ss_pred cCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ce
Q 013749 318 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KK 393 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~ 393 (437)
.+........ .......|+|+.||..+++++++++|.+||.|..+.++.++. ++
T Consensus 83 v~r~~~~~~~----------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 83 VSREDQTKVG----------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cCcccccccc----------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccccc
Confidence 6554211111 111346899999999999999999999999999998886643 78
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccccc
Q 013749 394 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 435 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~~ 435 (437)
|+||.|.+++...+++ ...-..|.|+.+.|.-|.+++....
T Consensus 141 Fgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 141 FGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ceeeEeccccccceec-ccceeeecCceeeEeeccchhhccc
Confidence 9999999999888885 6677789999999999999988764
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1.2e-15 Score=133.10 Aligned_cols=182 Identities=20% Similarity=0.290 Sum_probs=135.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeE--------EEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNII--------RIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRL 312 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~--------~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 312 (437)
+.|||+|||.| +|.+++.++|+++|.|. .|++.++. +|=|++.|--.++...|++.|++..|.|+.|
T Consensus 135 t~VYVsgLP~D-iT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 135 TSVYVSGLPLD-ITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred ceEEecCCCCc-ccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 36999999995 99999999999999875 37887755 7899999999999999999999999999999
Q ss_pred EEEEccCCCC---CCCCC----cccccc-----CCCCCCCcchhccccccCCCcceEEecCC--CC--CCC-------HH
Q 013749 313 EVNFSKHPNI---TQGAD----THEYMN-----SNLNRFNRNAAKNYRYCCSPTKMIHLSTL--PQ--DVT-------EE 369 (437)
Q Consensus 313 ~v~~~~~~~~---~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--p~--~~t-------~~ 369 (437)
+|+.++-..- ..... ..+... .....+...... .+.....++|.++|+ |. ..+ .+
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~--~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDD--PSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccc--cccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9998774432 00000 000000 000000000000 112223588999998 22 222 47
Q ss_pred HHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 370 ~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
+|++-++.||.|.+|.++.....|.+.|.|.+.++|..|++.|+|..+.||.|..+..--
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 888889999999999999766689999999999999999999999999999999887543
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.2e-15 Score=123.28 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=71.5
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+++|||+|||+++||++|+++|++||.|.+|.++++ +|||||+|.+.++|++|++.+++. .++|+.|+|.|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~--~i~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK--ELNGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEe
Confidence 5788999999999999999999999999999999865 599999999999999999999988 89999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87643
No 62
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.62 E-value=3.8e-14 Score=134.10 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=61.3
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeE-EEEE-eeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKLF-EMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~-~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
++|.+.|+|++++.+||.++|..|-.+-. |.+- .+++ .|-|.|.|++.++|.+|...|++++|..|.++|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 48999999999999999999999977744 3332 2333 67899999999999999999999999999998854
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.61 E-value=5.9e-15 Score=132.34 Aligned_cols=232 Identities=13% Similarity=0.116 Sum_probs=179.1
Q ss_pred EEEeCcCCCCCHHHHHHhcC-CCCceeEEEEE----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 103 VTIHHMLYPITVEVLHQVFS-PHGFVEKIVTF----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 103 v~v~nl~~~~~~~~l~~~f~-~~G~i~~i~~~----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
+||+|||+++.+++|+++|. +.|.|+-|.++ ++++|. |.|+|.++|.+++|++.||...+.++.+ .++-..
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGc-avVEFk~~E~~qKa~E~lnk~~~~GR~l--~vKEd~- 122 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGC-AVVEFKDPENVQKALEKLNKYEVNGREL--VVKEDH- 122 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCc-eEEEeeCHHHHHHHHHHhhhccccCceE--EEeccC-
Confidence 99999999999999999997 57999988876 788897 9999999999999999999998888543 332111
Q ss_pred CcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCC
Q 013749 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRI 257 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~ 257 (437)
+.+++... +. .....+.|+.++.. ..
T Consensus 123 ---------d~q~~~~~------------~~--------------------------------~r~g~~~f~~~~~~-q~ 148 (608)
T KOG4212|consen 123 ---------DEQRDQYG------------RI--------------------------------VRDGGGGFGGGGGV-QG 148 (608)
T ss_pred ---------chhhhhhh------------he--------------------------------eeccCcccccCcce-ec
Confidence 11111000 00 01112688999998 58
Q ss_pred CHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCcccccc
Q 013749 258 DEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMN 333 (437)
Q Consensus 258 t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 333 (437)
-..-|...|+--|.+.+-...+|. ++..++.|++...+..++..+++....-++++. +..
T Consensus 149 G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~p--------------- 212 (608)
T KOG4212|consen 149 GNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-FSP--------------- 212 (608)
T ss_pred ccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccC-CCC---------------
Confidence 888888889888876655555543 667899999999999999977777766666664 322
Q ss_pred CCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHH
Q 013749 334 SNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALV 410 (437)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~ 410 (437)
|....++|.||.+.+..+.|++.|.-.|+|..+.+--++ .++++.++|..+-+|..|+.
T Consensus 213 ------------------Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 213 ------------------PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred ------------------CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHH
Confidence 123568899999999999999999999999888775443 37899999999999999999
Q ss_pred HhCCCccCCcEEEEEe
Q 013749 411 CKHASSLGGSIIRISF 426 (437)
Q Consensus 411 ~l~~~~~~g~~l~v~~ 426 (437)
.+++.-+..++..+-+
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9998777777766655
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=4.2e-15 Score=105.56 Aligned_cols=67 Identities=36% Similarity=0.512 Sum_probs=63.0
Q ss_pred EEecCCCCCCCHHHHHHhhhccCCeeEEEEEee---CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEE
Q 013749 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIR 423 (437)
Q Consensus 357 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 423 (437)
|||+|||.++|+++|+++|++||.|..+.+..+ +.+++|||+|.+.++|++|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 2378999999999999999999999999999986
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=9.5e-15 Score=126.56 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=71.5
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee-CC-ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-NG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~~-~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+.|||+|||+...|-||+.+|.+||+|.+|.|+.+ +| ||||||.|++.+||++|..+|||..+.||+|.|..++.+
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 67999999999999999999999999999999865 33 999999999999999999999999999999999998765
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=1.4e-14 Score=102.78 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=61.7
Q ss_pred EEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 8 l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
|||+|||+++|+++|+++|++||.|..+.+.++ +++|||+|.+.++|.+|++.+++. .++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~--~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK--KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC--EECccCcC
Confidence 799999999999999999999999999999985 599999999999999999999998 99999875
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.5e-14 Score=122.40 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=70.1
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC-CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||+|||+++|+++|+++|+.||.|.++.|+.++ .+|||||+|.++++|..|+ .|||..|.|+.|.|+++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 4789999999999999999999999999999999775 3789999999999999999 5999999999999999873
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.6e-14 Score=117.03 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=74.2
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
..++|.|.||+.+++|.+|+++|.+||.|.++.+.+++. ||||||.|.++++|.+|+..|||.-+..=.|+|+||+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 468899999999999999999999999999999998754 8899999999999999999999999999999999999
Q ss_pred Ccc
Q 013749 429 LQS 431 (437)
Q Consensus 429 ~~~ 431 (437)
|+.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 874
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.52 E-value=6.2e-13 Score=116.35 Aligned_cols=192 Identities=15% Similarity=0.190 Sum_probs=131.4
Q ss_pred EEEEEeCcCCCCCHHHHHHhcCCCCceeE--------EEEE----eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCc
Q 013749 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEK--------IVTF----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC 168 (437)
Q Consensus 101 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------i~~~----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 168 (437)
..|||.|||.++|.+++.++|+++|.|.+ |.++ ++-+|- |++.|...++...|++.|++..+.| +
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGD-aLc~y~K~ESVeLA~~ilDe~~~rg--~ 211 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGD-ALCCYIKRESVELAIKILDEDELRG--K 211 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCc-eEEEeecccHHHHHHHHhCcccccC--c
Confidence 34999999999999999999999998853 5565 555676 9999999999999999999999975 7
Q ss_pred eEEEEEecCCcceeeecCCcccCc--cCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCC-CCCCCCCCcc
Q 013749 169 QLDIQFSNLDELQVNYNNERSRDF--TNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP-PGITGTNDRC 245 (437)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (437)
.|+|+.|+... +...+..... ..+...... ..-....++..- +..+.....+
T Consensus 212 ~~rVerAkfq~---Kge~~~~~k~k~k~~~~kk~~----------------------k~q~k~~dw~pd~~~~sk~r~~~ 266 (382)
T KOG1548|consen 212 KLRVERAKFQM---KGEYDASKKEKGKCKDKKKLK----------------------KQQQKLLDWRPDRDDPSKARADR 266 (382)
T ss_pred EEEEehhhhhh---ccCcCcccccccccccHHHHH----------------------HHHHhhcccCCCccccccccCCc
Confidence 88888876321 1100000000 000000000 000000000000 0112234446
Q ss_pred EEEEecCCC--C-CCC-------HHHHHHHHhccCCeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 013749 246 TVLVSNLNS--D-RID-------EDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314 (437)
Q Consensus 246 ~l~V~nl~~--~-~~t-------~~~l~~~F~~~G~v~~v~i~~~~-~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 314 (437)
+|.++|+-. + ..+ .++|.+-+++||.|.+|.+...+ .|.+-|.|.+.++|..|++.|+|+.|.||.|..
T Consensus 267 tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A 346 (382)
T KOG1548|consen 267 TVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTA 346 (382)
T ss_pred EEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEE
Confidence 899999864 1 122 23667789999999999888644 789999999999999999999999999999999
Q ss_pred EEccCC
Q 013749 315 NFSKHP 320 (437)
Q Consensus 315 ~~~~~~ 320 (437)
+.....
T Consensus 347 ~i~DG~ 352 (382)
T KOG1548|consen 347 SIWDGK 352 (382)
T ss_pred EEeCCc
Confidence 875433
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=7.6e-14 Score=98.92 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=60.9
Q ss_pred EEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEE
Q 013749 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIR 423 (437)
Q Consensus 357 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 423 (437)
|+|+|||+.+++++|+++|+.||.|..+.+..++. +++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999997643 78999999999999999999999999999885
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.4e-14 Score=120.14 Aligned_cols=155 Identities=14% Similarity=0.223 Sum_probs=123.3
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccccc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTT 85 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~ 85 (437)
..|||++||+.+.+.||..+|+.||.|.++.+... |+||+|.+..+|..|+..+++. .+.|..+.+.|+.......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g--f~fv~fed~rda~Dav~~l~~~--~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG--FGFVEFEDPRDADDAVHDLDGK--ELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc--cceeccCchhhhhcccchhcCc--eecceeeeeeccccccccc
Confidence 35899999999999999999999999988877654 7799999999999999999998 8888888999887432211
Q ss_pred cccC-------CCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHc
Q 013749 86 MEQN-------AQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158 (437)
Q Consensus 86 ~~~~-------~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l 158 (437)
.... .+....+...-.++.+.+++..+.+.+|.+.|.++|.+..... ..++ +||+|...++|.+|+..+
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~-~~v~Fs~~~da~ra~~~l 153 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNF-AFVEFSEQEDAKRALEKL 153 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccc-cceeehhhhhhhhcchhc
Confidence 1110 1111112333356889999999999999999999999954433 3566 999999999999999999
Q ss_pred CCCCCCCCCc
Q 013749 159 QGRNIYDGCC 168 (437)
Q Consensus 159 ~~~~~~~~~~ 168 (437)
++..+.+..+
T Consensus 154 ~~~~~~~~~l 163 (216)
T KOG0106|consen 154 DGKKLNGRRI 163 (216)
T ss_pred cchhhcCcee
Confidence 9999987533
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=9.9e-14 Score=98.32 Aligned_cols=65 Identities=23% Similarity=0.452 Sum_probs=59.0
Q ss_pred EEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 8 l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
|||+|||++++++||+++|+.||.|.++.+.++ +++|||+|.+.++|.+|++.+++. .++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~--~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGK--EIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCc--EECCEEcC
Confidence 799999999999999999999999999999987 499999999999999999998866 89999874
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=9.4e-14 Score=126.61 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=73.1
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCH--HHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE--EQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~--~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+-+|||+||++.++++||+..|++||.|.++.|++.++||||||+|.+. .++.+||..|||..+.|+.|+|.-|++.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4679999999999999999999999999999999988999999999987 7899999999999999999999999864
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.2e-13 Score=109.17 Aligned_cols=79 Identities=34% Similarity=0.466 Sum_probs=73.8
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCC
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 322 (437)
..+.|||+||+. .+++.||..+|..||.+.+|+|-.++.|||||+|+++.||..|+..|+|..|+|..++|++++...-
T Consensus 9 ~~~kVYVGnL~~-~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGS-RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCC-CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 346899999998 6999999999999999999999998899999999999999999999999999999999999886543
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=97.62 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=70.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.+.|||+|||+++|.++..++|.+||.|..++|=..++ +|.|||-|++..+|.+|++.|+|..+.++-|.|-+-++.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 47899999999999999999999999999999954433 899999999999999999999999999999999886653
No 76
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=3.8e-13 Score=118.90 Aligned_cols=276 Identities=16% Similarity=0.184 Sum_probs=169.6
Q ss_pred eEEEEcCCCccCcHHHHHHhccCC----ccceEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPF----GVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~----G~i~~v~i~~--~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
-.|-.++||+..++.++-.+|+-. |-+.=|.... -.|+|.|.|.+.|.-.-|++... ..++++.+.|--+.
T Consensus 61 vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhk---hh~g~ryievYka~ 137 (508)
T KOG1365|consen 61 VVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHK---HHMGTRYIEVYKAT 137 (508)
T ss_pred eEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhh---hhccCCceeeeccC
Confidence 456778999999999999999743 2121122222 23899999999999999998543 36888888887655
Q ss_pred ccccccccc--CCCCCCCC-CCcEEEEEEeCcCCCCCHHHHHHhcCCCCc----eeEEEEE----eeCCccEEEEEecCh
Q 013749 80 HQELTTMEQ--NAQGRGDE-PNRILLVTIHHMLYPITVEVLHQVFSPHGF----VEKIVTF----QKSAGFQALIQYQLR 148 (437)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~-~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~----i~~i~~~----~~~~g~~afV~f~~~ 148 (437)
..+.-.... +....... ..+-..|.+++||+++++.++.++|.+-.+ .+.|.+. ++..|- |||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGd-AFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGD-AFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccc-eEEEecCH
Confidence 544321111 11111111 133445788999999999999999975333 3455544 445565 99999999
Q ss_pred hHHHHHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 013749 149 PSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAA 228 (437)
Q Consensus 149 ~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (437)
++|+.|+.+- .+.+..+ -+.+..+...+.....+... .+.+-... +.+ ..+..+
T Consensus 217 e~aq~aL~kh-rq~iGqR--YIElFRSTaaEvqqvlnr~~-----s~pLi~~~---------~sp--~~p~~p------- 270 (508)
T KOG1365|consen 217 EDAQFALRKH-RQNIGQR--YIELFRSTAAEVQQVLNREV-----SEPLIPGL---------TSP--LLPGGP------- 270 (508)
T ss_pred HHHHHHHHHH-HHHHhHH--HHHHHHHhHHHHHHHHHhhc-----cccccCCC---------CCC--CCCCCc-------
Confidence 9999999762 2233211 11222221111111100000 00000000 000 000000
Q ss_pred hcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCC-eEE--EEEecCC----CCeEEEEeCCHHHHHHHHHH
Q 013749 229 AFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN-IIR--IKLLRNK----PDHALVQMGDGFQAELAVHF 301 (437)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~--v~i~~~~----~g~~fV~f~~~~~A~~A~~~ 301 (437)
.... ....+.-+|.+++||+ ..+.++|.++|..|.. |.- |++.-+. .|-|||+|.+.++|..|...
T Consensus 271 --~~~~----p~~~~kdcvRLRGLPy-~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk 343 (508)
T KOG1365|consen 271 --ARLV----PPTRSKDCVRLRGLPY-EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQK 343 (508)
T ss_pred --cccC----CCCCCCCeeEecCCCh-hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHH
Confidence 0000 1112234899999999 6999999999999874 332 5665544 67999999999999999999
Q ss_pred hcCceeCCcEEEEEEcc
Q 013749 302 LKGALLFGKRLEVNFSK 318 (437)
Q Consensus 302 l~g~~~~g~~l~v~~~~ 318 (437)
.++.....|.|.|-...
T Consensus 344 ~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 344 CHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHHhhcccceEEEeecc
Confidence 99888888888886543
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=2e-13 Score=117.82 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=68.3
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc---CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~---~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
.++|||+|||+.+||+||+++|+.||+|.+|.|+++ +|||||+|.+.++|..|+. |++. .+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~--~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGA--TIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCC--eeCCceEEEEeccC
Confidence 589999999999999999999999999999999987 4999999999999999996 8888 89999999998764
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.1e-13 Score=107.78 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=71.3
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.|||+||+..+++.||...|..||.+..|-|.. +.-|||||||+++.||..|+..|+|+.|.|..|+|++++-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 47799999999999999999999999999988876 458899999999999999999999999999999999987543
No 79
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=3.6e-13 Score=90.52 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=51.4
Q ss_pred HHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 371 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 371 l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
|+++|++||.|.++.+.+++ +++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998643 589999999999999999999999999999999997
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1e-12 Score=94.31 Aligned_cols=76 Identities=26% Similarity=0.384 Sum_probs=69.2
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 319 (437)
.++.|||.|||+ .+|.++.+++|.+||.|..+++=..+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-|-.+
T Consensus 17 vnriLyirNLp~-~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPF-KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCc-cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345899999999 69999999999999999999886544 89999999999999999999999999999999988553
No 81
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.1e-12 Score=106.78 Aligned_cols=78 Identities=35% Similarity=0.410 Sum_probs=73.3
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 316 (437)
.+.++|.|.||+. .+++++|.+||.+||.|.++.+.+|+ +|||||.|.+.++|.+||..|||.-+..-.|+|.|
T Consensus 187 ~D~~tvRvtNLse-d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSE-DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCcc-ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4667999999998 69999999999999999999999977 89999999999999999999999999999999999
Q ss_pred ccCC
Q 013749 317 SKHP 320 (437)
Q Consensus 317 ~~~~ 320 (437)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 82
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=113.83 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=73.8
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
.....+|+|+|+|+ ...+.||+.+|.+||.|.+|.|+-+. |||+||.|++.+||++|-..|||..+.||+|+|..+
T Consensus 93 ~~~pkRLhVSNIPF-rFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPF-RFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCc-cccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34446899999999 79999999999999999999988755 889999999999999999999999999999999998
Q ss_pred cCCCC
Q 013749 318 KHPNI 322 (437)
Q Consensus 318 ~~~~~ 322 (437)
+....
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 87754
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.7e-13 Score=111.81 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=69.0
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
+.+|+|+||++++|+++|+++|+.||+|.+|.|++++. +++|||+|.++++|..|+ .|||..|.|++|.|+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 57999999999999999999999999999999998754 579999999999999998 899999999999999855
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-13 Score=112.97 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=79.4
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||++|..+++|.-|..-|-+||.|..+.++.+ ++++||||+|.-.|||..|+..||+.+|.||.|+|.||+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 389999999999999999999999999999999855 5689999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 013749 430 QSIRENSQ 437 (437)
Q Consensus 430 ~~~~~~~~ 437 (437)
.-++.-||
T Consensus 90 ~kikegsq 97 (298)
T KOG0111|consen 90 EKIKEGSQ 97 (298)
T ss_pred ccccCCCC
Confidence 99988776
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.1e-13 Score=100.30 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=68.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
..|+||||+||...++|+.|.++|++.|+|..|.+--|+ |||||+|.+.++|..|++.++++ .++.++|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt--rLddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT--RLDDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC--cccccceeee
Confidence 458999999999999999999999999999888876554 99999999999999999999999 8999999999
Q ss_pred ec
Q 013749 77 FS 78 (437)
Q Consensus 77 ~s 78 (437)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 84
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.4e-12 Score=92.75 Aligned_cols=70 Identities=33% Similarity=0.520 Sum_probs=64.5
Q ss_pred eEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC--CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN--GKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 356 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
+|+|+|||..+++++|+++|++||.|..+.+..+. .+++|||+|.+.++|++|++.++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988654 36899999999999999999999999999999874
No 87
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.2e-13 Score=98.98 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=68.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
..++||||+||++.++|++|.++|+.+|.|..|.+=-++. =||+||+|-+.++|..|++.++|..|..++|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3479999999999999999999999999999988754433 359999999999999999999999999999999873
No 88
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=3.7e-12 Score=112.74 Aligned_cols=272 Identities=12% Similarity=0.098 Sum_probs=164.4
Q ss_pred EEEEEEeCcCCCCCHHHHHHhcCCCC-----ceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEE
Q 013749 100 ILLVTIHHMLYPITVEVLHQVFSPHG-----FVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (437)
Q Consensus 100 ~~~v~v~nl~~~~~~~~l~~~f~~~G-----~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~ 174 (437)
...|..+++|+.-++.+|-.+|.... .......-++..|. |.|.|.++|.-..|++.-.. .+.. ..+.+.-
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge-~lvrf~d~e~RdlalkRhkh-h~g~--ryievYk 135 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGE-ALVRFVDPEGRDLALKRHKH-HMGT--RYIEVYK 135 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccc-eEEEecCchhhhhhhHhhhh-hccC--Cceeeec
Confidence 34477899999999999999997542 22222222554564 99999999999999876322 2222 2223322
Q ss_pred ecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCC
Q 013749 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS 254 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 254 (437)
+...+.-.- +. + +...++.+-.......|..++||+
T Consensus 136 a~ge~f~~i-ag-----g--------------------------------------~s~e~~~flsk~~qvivRmRGLPf 171 (508)
T KOG1365|consen 136 ATGEEFLKI-AG-----G--------------------------------------TSNEAAPFLSKENQVIVRMRGLPF 171 (508)
T ss_pred cCchhheEe-cC-----C--------------------------------------ccccCCCCCCcccceEEEecCCCC
Confidence 221111000 00 0 000000001111223788999999
Q ss_pred CCCCHHHHHHHHhccC----CeEEEEEec--CC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCC----
Q 013749 255 DRIDEDKLFNLFSLYG----NIIRIKLLR--NK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---- 322 (437)
Q Consensus 255 ~~~t~~~l~~~F~~~G----~v~~v~i~~--~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~---- 322 (437)
.+++.|+.++|..-. ....+-++. |. .|-|||.|...++|+.|+. -|...++.|.|.+-.++....
T Consensus 172 -dat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvl 249 (508)
T KOG1365|consen 172 -DATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVL 249 (508)
T ss_pred -CcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHH
Confidence 599999999997432 333443333 22 7899999999999999998 566667777776655543322
Q ss_pred ---CCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeE---EEE-EeeCC--ce
Q 013749 323 ---TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN---TKL-FEMNG--KK 393 (437)
Q Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~---~~i-~~~~~--~~ 393 (437)
...+..... .++.-. ......-....+...|.+++||++.+.+||.++|.+|-.-+. |.+ ++.+| .|
T Consensus 250 nr~~s~pLi~~~-~sp~~p---~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 250 NREVSEPLIPGL-TSPLLP---GGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HhhccccccCCC-CCCCCC---CCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 001111100 000000 000000001122467999999999999999999999875533 333 33334 57
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 394 QALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
-|||+|.+.|+|..|....+.+..++|-|.|-
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 99999999999999999999888778877664
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.7e-12 Score=110.12 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=69.6
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC---CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK---NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~---~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
|.+...+|||+||++.+||+||+++|+.||+|.+|.|++++ ++|||+|.+.++|..|+. |++. .+.+++|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa--~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGA--TIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCC--eeCCceEEEEe
Confidence 66778999999999999999999999999999999999874 899999999999999995 8887 89999999986
Q ss_pred cc
Q 013749 78 SS 79 (437)
Q Consensus 78 s~ 79 (437)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 44
No 90
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.7e-13 Score=110.77 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=66.1
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.-..|||+|||+++..++|+++|++||+|++..|+.| |||+||+|.+.++|.+|.+.-+ +.|+||+..+++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~---piIdGR~aNcnl 87 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN---PIIDGRKANCNL 87 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC---Ccccccccccch
Confidence 3468999999999999999999999999999999976 4999999999999999988543 479999999997
Q ss_pred ccc
Q 013749 78 SSH 80 (437)
Q Consensus 78 s~~ 80 (437)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 654
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.38 E-value=3.2e-12 Score=85.87 Aligned_cols=56 Identities=30% Similarity=0.586 Sum_probs=52.1
Q ss_pred HHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 262 l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
|+++|++||.|.++.+..+.+++|||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998875699999999999999999999999999999999986
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1e-12 Score=107.47 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=77.1
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
|+...|+|||++|-.+++|.-|...|=+||.|.+|.+.-| ||||||+|.-.|||..|+..||.. .+.||.|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes--EL~Grtir 83 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES--ELFGRTIR 83 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh--hhcceeEE
Confidence 4567899999999999999999999999999999999854 799999999999999999999999 99999999
Q ss_pred EEeccccccccc
Q 013749 75 VQFSSHQELTTM 86 (437)
Q Consensus 75 v~~s~~~~~~~~ 86 (437)
|+++++......
T Consensus 84 VN~AkP~kikeg 95 (298)
T KOG0111|consen 84 VNLAKPEKIKEG 95 (298)
T ss_pred EeecCCccccCC
Confidence 999998765543
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.1e-12 Score=90.01 Aligned_cols=67 Identities=34% Similarity=0.510 Sum_probs=61.8
Q ss_pred ecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 359 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 359 v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
|+|||..+++++|+++|++||.|..+.+..++. +++|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999987543 7899999999999999999999999999999874
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=3.8e-12 Score=90.47 Aligned_cols=67 Identities=24% Similarity=0.432 Sum_probs=62.7
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEccC----CeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~----~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
+|+|+|||..+++++|+++|++||+|.++.+.+++ ++|||+|.+.++|++|++.+++. .+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~--~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT--KLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCc--EECCEEEee
Confidence 48999999999999999999999999999999876 99999999999999999999887 789988876
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=113.11 Aligned_cols=164 Identities=23% Similarity=0.336 Sum_probs=115.0
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
.++|||+|||. .+++++|.++|+.||.|..+.+..+. +|+|||+|.+.++|..|+..++|..|.|+.|+|.+..
T Consensus 115 ~~~l~v~nL~~-~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPY-DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCC-CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 46999999999 69999999999999999998887763 7999999999999999999999999999999999976
Q ss_pred C-CCC-CCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-c---
Q 013749 319 H-PNI-TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-K--- 392 (437)
Q Consensus 319 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~--- 392 (437)
. ... ...... . .....................+++.+++..++..++...|..+|.+....+..... .
T Consensus 194 ~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (306)
T COG0724 194 PASQPRSELSNN--L----DASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPK 267 (306)
T ss_pred cccccccccccc--c----chhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccc
Confidence 4 110 000000 0 00000000011011234467899999999999999999999999997777764332 1
Q ss_pred eEEEEEecCHHHHHHHHHHhCC
Q 013749 393 KQALVLFETEEQATEALVCKHA 414 (437)
Q Consensus 393 ~~afV~f~~~~~A~~A~~~l~~ 414 (437)
...++.+.....+..+......
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
T COG0724 268 SRSFVGNEASKDALESNSRGNK 289 (306)
T ss_pred cccccchhHHHhhhhhhccccc
Confidence 2333444444444444443333
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.1e-11 Score=88.65 Aligned_cols=71 Identities=32% Similarity=0.543 Sum_probs=66.0
Q ss_pred eEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 356 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. +++|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999987543 78999999999999999999999999999999875
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=1.9e-12 Score=105.05 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=71.0
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.+|.|-||-+.++.++|+.+|+.||.|-+|.|+.+. .+|||||.|-+..+|+.|++.|+|.+|.|+.|.|++|+.-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 579999999999999999999999999999999763 3899999999999999999999999999999999998753
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=111.05 Aligned_cols=127 Identities=18% Similarity=0.290 Sum_probs=101.5
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
.++|||+|||.++++++|+++|.+||.|..+.+..++ |+|||+|.+.++|..|+..+++. .+.|++|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~--~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK--ELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC--eECCceeEeecc
Confidence 5899999999999999999999999999999998774 99999999999999999999988 999999999996
Q ss_pred cc----cccccc--c-----cCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE
Q 013749 79 SH----QELTTM--E-----QNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (437)
Q Consensus 79 ~~----~~~~~~--~-----~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~ 133 (437)
.. ...... . ...............+++.+++..++..++...|..+|.+....+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 42 111110 0 0001111223334458899999999999999999999999666554
No 99
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=4.6e-13 Score=106.41 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=69.4
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
+..|||+|||+++||.||...|++||.|..|.+++++. +||||..|++-.+...|+..|||..|.||.|+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 47899999999999999999999999999999998854 78999999999999999999999999999999986
No 100
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.8e-11 Score=114.22 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=110.6
Q ss_pred EEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcce
Q 013749 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~ 181 (437)
.|+|.|||..+++++|+.+|+.||+|..|......+|. .||+|-+..+|++|++.|+++.+.+..+. ......
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~-~~v~FyDvR~A~~Alk~l~~~~~~~~~~k--~~~~~~---- 149 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGI-VFVEFYDVRDAERALKALNRREIAGKRIK--RPGGAR---- 149 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCce-EEEEEeehHhHHHHHHHHHHHHhhhhhhc--CCCccc----
Confidence 38999999999999999999999999999888887886 99999999999999999999999876442 000000
Q ss_pred eeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHH
Q 013749 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~ 261 (437)
........ -..+.....+.+.+...++. ...+++- |++ ..+..-
T Consensus 150 ------------~~~~~~~~------------~~~~~~~~~p~a~s~pgg~~----------~~~~~g~-l~P-~~s~~~ 193 (549)
T KOG4660|consen 150 ------------RAMGLQSG------------TSFLNHFGSPLANSPPGGWP----------RGQLFGM-LSP-TRSSIL 193 (549)
T ss_pred ------------ccchhccc------------chhhhhccchhhcCCCCCCc----------CCcceee-ecc-chhhhh
Confidence 00000000 00011111111111111111 1134333 888 677777
Q ss_pred HHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 013749 262 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319 (437)
Q Consensus 262 l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 319 (437)
+...|+.+|.+.. +........-|++|.+..++..+...+ |..+.+......++.+
T Consensus 194 ~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 194 LEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 7778888888766 444433457788998888886666633 6666666655555543
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=6.2e-12 Score=104.66 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=64.0
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
..|||++|++++..++|+++|++||+|++..++.|+ .||||||.|++.+.|.+|++..|- .|+||+--+.+|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchh
Confidence 569999999999999999999999999999999774 489999999999999999977665 678888777664
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=1.9e-11 Score=111.80 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=71.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-CCeEEEEeCCH--HHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDG--FQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~fV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
.+|||+||++ .+++++|..+|+.||.|.+|.|++.. +|||||+|.+. .++.+|+..|||..+.|+.|+|..+++..
T Consensus 11 MRIYVGNLSy-dVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~Y 89 (759)
T PLN03213 11 VRLHVGGLGE-SVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHY 89 (759)
T ss_pred eEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHH
Confidence 4899999999 69999999999999999999999744 89999999987 78999999999999999999999988765
Q ss_pred C
Q 013749 322 I 322 (437)
Q Consensus 322 ~ 322 (437)
.
T Consensus 90 L 90 (759)
T PLN03213 90 L 90 (759)
T ss_pred H
Confidence 4
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=93.32 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=69.3
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+.-|+|.++..+.||++|.+.|..||.|.++.+--++. ||||+|+|.+.++|++|+..+||..|-|+.|.|.|.=
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 357799999999999999999999999999998865533 8899999999999999999999999999999999853
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=2.7e-11 Score=86.56 Aligned_cols=69 Identities=29% Similarity=0.517 Sum_probs=64.0
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
+|+|+|||+.+++++|+++|+.||.|..+.+.++ +++|||+|.+.++|+.|++.+++. .++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~--~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK--ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEeC
Confidence 4899999999999999999999999999999976 589999999999999999999988 78999988864
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.8e-11 Score=104.01 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=75.3
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
|-+||||.-|+.+++|++|+..|+.||.|..+.|..+ +.+|||||+|.++.+...|.+..+|.+|+|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 5589999999999999999999999999999999876 458999999999999999999999999999999999987
Q ss_pred Ccccc
Q 013749 429 LQSIR 433 (437)
Q Consensus 429 ~~~~~ 433 (437)
-+++|
T Consensus 180 gRTvk 184 (335)
T KOG0113|consen 180 GRTVK 184 (335)
T ss_pred ccccc
Confidence 77665
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=3.7e-11 Score=90.72 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=71.0
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 316 (437)
-..-.|||.++.++ +++++|.+.|..||.|+.+.+.-+. +||++|+|.+.++|+.|+..+||..+.|..|.|.|
T Consensus 70 VEGwIi~VtgvHeE-atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEE-ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcc-hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34458999999984 9999999999999999999887765 88999999999999999999999999999999999
Q ss_pred ccCC
Q 013749 317 SKHP 320 (437)
Q Consensus 317 ~~~~ 320 (437)
.-..
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7644
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=4.3e-10 Score=107.12 Aligned_cols=181 Identities=11% Similarity=-0.015 Sum_probs=118.9
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec-----CCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR-----NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~-----~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
.+.+-+++.++ +.++.+++.+|...- |.++.+.. ...|-++|+|..+.++.+|++ -|...+-.|.+.+....
T Consensus 311 ~~y~~~~gm~f-n~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 311 KYYNNYKGMEF-NNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hheeeeccccc-ccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 36777889998 899999999987542 33333333 337899999999999999987 45566677778776554
Q ss_pred CCCCCCCCCcccccc-----------CCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeE-EEE
Q 013749 319 HPNITQGADTHEYMN-----------SNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKL 386 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i 386 (437)
...-...+....+.. ....|.......+.......+.+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 333211111100000 00011111111111122334688999999999999999999988777766 444
Q ss_pred Ee---eCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 387 FE---MNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 387 ~~---~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
-+ ++-++.|||+|..++++.+|...-+-..++.|.|+|.-.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 32 233679999999999999998666665666777887653
No 108
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=3e-11 Score=98.17 Aligned_cols=76 Identities=29% Similarity=0.441 Sum_probs=70.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 319 (437)
.+|.|.||.. .++.++|+.+|++||.|-+|.|..|. +|||||.|....+|+.|+..|+|..+.|+-|+|++++.
T Consensus 14 ~SLkVdNLTy-RTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTY-RTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceec-cCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 4899999999 79999999999999999999998865 89999999999999999999999999999999998875
Q ss_pred CC
Q 013749 320 PN 321 (437)
Q Consensus 320 ~~ 321 (437)
.-
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.7e-11 Score=106.26 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=74.7
Q ss_pred cCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
..||.++|||..|.+-++++||.-+|++||+|.+|.++++.. ..||||+|.+.+++++|.=.|.+..|.+++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 457889999999999999999999999999999999998754 4499999999999999999999999999999999
Q ss_pred eccCc
Q 013749 426 FSQLQ 430 (437)
Q Consensus 426 ~s~~~ 430 (437)
||++=
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 99864
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=5.9e-11 Score=83.94 Aligned_cols=64 Identities=28% Similarity=0.474 Sum_probs=58.8
Q ss_pred EcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 10 VRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 10 V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
|+|||.++++++|+++|++||.|.++.+.++ +++|||+|.+.++|.+|++.+++. .++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~--~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK--ELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC--eeCCcEEEe
Confidence 6899999999999999999999999999876 379999999999999999999876 788988876
No 111
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5e-12 Score=100.55 Aligned_cols=76 Identities=26% Similarity=0.468 Sum_probs=70.0
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
+..|||+|||. ..||.||.-+|++||.|..|.+++|+ +||||+.|++..+...|+.+|||..+.||.|+|....
T Consensus 35 sA~Iyiggl~~-~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPY-ELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcc-cccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34899999999 49999999999999999999999976 8899999999999999999999999999999998754
Q ss_pred CC
Q 013749 319 HP 320 (437)
Q Consensus 319 ~~ 320 (437)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 33
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=6.3e-11 Score=114.26 Aligned_cols=76 Identities=24% Similarity=0.459 Sum_probs=72.6
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
-||||||++||+.++|.||.++|+.||.|..|.++..++||||.+.+-.+|.+|+..|+.+ .+.++.|+|.|+...
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~--kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV--KVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcc--cccceeeEEeeeccC
Confidence 3799999999999999999999999999999999999999999999999999999999987 899999999998654
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.15 E-value=8.1e-11 Score=110.56 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=72.2
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+++||+|+|+++++++|..+|+..|.|.++++..|+. +||||++|.+.++|..|++.|||..+.||+|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999986633 889999999999999999999999999999999997654
Q ss_pred cc
Q 013749 431 SI 432 (437)
Q Consensus 431 ~~ 432 (437)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 114
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=100.46 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.|=+||||.-|+++++|.+|+..|+.||+|..|++++| +|||||+|.+..+-..|.+..++. .|+|+.|.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~--~Idgrri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI--KIDGRRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc--eecCcEEEEE
Confidence 46799999999999999999999999999999999987 499999999999999999999987 9999999999
Q ss_pred ecc
Q 013749 77 FSS 79 (437)
Q Consensus 77 ~s~ 79 (437)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.4e-10 Score=81.59 Aligned_cols=58 Identities=16% Similarity=0.325 Sum_probs=49.8
Q ss_pred HHHHHHhhh----ccCCeeEEE-EEee------CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 368 EEEIVSHLE----EHGSIVNTK-LFEM------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 368 ~~~l~~~f~----~~G~v~~~~-i~~~------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
+++|+++|+ .||.|.++. ++.+ ..+|+|||+|.+.++|.+|++.|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999985 4322 238999999999999999999999999999999863
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.5e-10 Score=99.42 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
++..++|||++|-..++|.||+++|.+||+|..|.++..++||||+|.+.++|+.|....-. .+.++|+.|.|.|+.+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcc-eeeecceEEEEEeCCC
Confidence 34568999999988999999999999999999999999999999999999999999887554 5689999999999888
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=7.9e-13 Score=128.65 Aligned_cols=321 Identities=17% Similarity=0.162 Sum_probs=205.0
Q ss_pred ceEEEEcCCCccCcHHHHH-Hhcc------CCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 5 SKVIHVRNVGHEISENDLL-QLFQ------PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~-~~f~------~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+...|.|-+...+...|+ ..++ .||.+-+++- ...+|++.-.+.++|..++..+.+. .-.+-.+.+.-
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~--~~R~ay~~~~~~~~~~ev~~~~~r~--Ere~gtl~~~~ 554 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARK--VLRKAYSQVVDPEDALEVLEFFRRF--EREYGTLESFD 554 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHH--HHHHHHhcCcCchhHHHHHHHHHHH--HhccccHHHHh
Confidence 3455677777777777777 3333 4455444443 2357999999999999999877654 22222221111
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHH-HHHHhcCCCCceeEEEEEee----CCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVE-VLHQVFSPHGFVEKIVTFQK----SAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~-~l~~~f~~~G~i~~i~~~~~----~~g~~afV~f~~~~~A~ 152 (437)
+.+.... +.... .+-.-.-..+.++.+..... ..+..|..+|.|++|....+ +.+.++++.++....++
T Consensus 555 ~~~~~~~-pr~~~-----~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~e 628 (881)
T KOG0128|consen 555 LCPEKVL-PRVYE-----APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAE 628 (881)
T ss_pred hhHHhhc-chhhh-----hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchh
Confidence 1111000 00000 00000013455665554444 67788999999999886531 12223677788888888
Q ss_pred HHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCC
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (437)
.|... .+..+.+... .+..+.... ..+ .
T Consensus 629 sat~p-a~~~~a~~~~--av~~ad~~~---------~~~---------~------------------------------- 656 (881)
T KOG0128|consen 629 SATVP-AGGALANRSA--AVGLADAEE---------KEE---------N------------------------------- 656 (881)
T ss_pred hcccc-cccccCCccc--cCCCCCchh---------hhh---------c-------------------------------
Confidence 77643 3433332211 111110000 000 0
Q ss_pred CCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec----C-CCCeEEEEeCCHHHHHHHHHHhcCcee
Q 013749 233 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR----N-KPDHALVQMGDGFQAELAVHFLKGALL 307 (437)
Q Consensus 233 ~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~----~-~~g~~fV~f~~~~~A~~A~~~l~g~~~ 307 (437)
............++||+||++ .+.+.+|...|+.+|.+..+++.. + -+|.||+.|..+++|.+|+....++.+
T Consensus 657 -~kvs~n~~R~~~~~fvsnl~~-~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 657 -FKVSPNEIRDLIKIFVSNLSP-KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred -cCcCchHHHHHHHHHHhhcch-hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 000000012235799999999 799999999999999887665541 1 289999999999999999995444333
Q ss_pred CCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEE
Q 013749 308 FGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 387 (437)
Q Consensus 308 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~ 387 (437)
+ + ..++|+|.|+..|.++|+.+|+.+|.+.++++.
T Consensus 735 g---------K------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~v 769 (881)
T KOG0128|consen 735 G---------K------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLV 769 (881)
T ss_pred h---------h------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchh
Confidence 2 0 348899999999999999999999999998877
Q ss_pred eeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccccc
Q 013749 388 EMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 434 (437)
Q Consensus 388 ~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~ 434 (437)
..+ .+|.|+|.|.+..+|.++...+....++.+.+.|..|.+.-.|+
T Consensus 770 t~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 770 TVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred hhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 543 38899999999999999999998888888888888877644443
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=5.2e-10 Score=108.07 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=74.5
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
++||||+.||..++|.||..+|++||.|.+|.++. .++||||.+.++++|.+|++.|+...+.++.|++.|+-.+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 68999999999999999999999999999999984 6999999999999999999999999999999999999877665
Q ss_pred c
Q 013749 434 E 434 (437)
Q Consensus 434 ~ 434 (437)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 4
No 119
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.03 E-value=5.3e-10 Score=105.10 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=71.4
Q ss_pred CCCc-eEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 2 TEPS-KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 2 ~~~s-~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
.++. +.|||||||++++|++|..+|+..|.|.+++++-| +||||++|.+.++|.+|+..||+. .+.|++|+
T Consensus 14 ~~~~~~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~--~~~gr~l~ 91 (435)
T KOG0108|consen 14 SPGLSSSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA--EFNGRKLR 91 (435)
T ss_pred CcccccceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc--ccCCceEE
Confidence 3444 89999999999999999999999999999999977 499999999999999999999999 99999999
Q ss_pred EEeccc
Q 013749 75 VQFSSH 80 (437)
Q Consensus 75 v~~s~~ 80 (437)
|.|+.-
T Consensus 92 v~~~~~ 97 (435)
T KOG0108|consen 92 VNYASN 97 (435)
T ss_pred eecccc
Confidence 999754
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=7.3e-10 Score=97.47 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=67.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHH-hCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC-KHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~-l~~~~~~g~~l~v~~s~~ 429 (437)
-.+|||++|-+.++|++|++.|.+||.|.++.+.. ++++|||+|.+++.|+.|.+. +|...|+|++|+|.|+++
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 37899999988999999999999999999999985 678999999999999999876 566667899999999998
No 121
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=5.8e-10 Score=104.30 Aligned_cols=179 Identities=21% Similarity=0.159 Sum_probs=122.6
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
..+..+|+|-|||. .+++++|..+|+.||+|+.|+....+++.+||+|-+..+|+.|++.|++..+.|+.++-..+...
T Consensus 72 ~~~~~~L~v~nl~~-~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPR-SVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred cCccceEEEEecCC-cCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 34556999999999 79999999999999999998888888999999999999999999999999999999982111111
Q ss_pred CCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEec
Q 013749 321 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFE 400 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~ 400 (437)
. ...... .+-+..+..+.......-. +...+++ .|++..+..-++..++.+|.+.. +..... ...-|++|.
T Consensus 151 ~---~~~~~~--~~~~~~~~~p~a~s~pgg~-~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-~hq~~~~~~ 221 (549)
T KOG4660|consen 151 A---MGLQSG--TSFLNHFGSPLANSPPGGW-PRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLL-NHQRFVEFA 221 (549)
T ss_pred c---chhccc--chhhhhccchhhcCCCCCC-cCCccee-eeccchhhhhhhcchhccCcccc-ccccch-hhhhhhhhc
Confidence 0 000000 0001111111111100000 1122333 38888888888888898998877 443221 227789999
Q ss_pred CHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 401 TEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 401 ~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+..++..+...+ |+.+.+.....+||.+-
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEecCCC
Confidence 999996666544 77777888888888763
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=3.4e-10 Score=111.12 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=130.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
..++|||++||+..+++.+|+..|..+|.|.+|.|.+- -.||||.|.+...+..|...+.+. .|....+++.+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~--~I~~g~~r~gl 447 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGP--LIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCC--ccccCcccccc
Confidence 35789999999999999999999999999999888643 388999999999999998887766 44444555555
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~ 157 (437)
...+ .+.+.++++++|...+....|...|..||+|..|.+ .+..-| |||+|++...|+.|+..
T Consensus 448 G~~k---------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~y-ayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 448 GQPK---------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPY-AYIQYESPPAAQAATHD 510 (975)
T ss_pred cccc---------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcc-eeeecccCccchhhHHH
Confidence 4331 233445899999999999999999999999988765 333345 99999999999999999
Q ss_pred cCCCCCCCCCceEEEEEecCCc
Q 013749 158 LQGRNIYDGCCQLDIQFSNLDE 179 (437)
Q Consensus 158 l~~~~~~~~~~~l~~~~~~~~~ 179 (437)
|.|..+.+....+++.+++...
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HhcCcCCCCCcccccccccCCC
Confidence 9999998888889998887654
No 123
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.4e-10 Score=95.31 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=110.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC----CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~----~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
++..+||||.|+-..++|+-|.++|-+-|+|..|.|..++ .||||.|.++-++.-|++.+|+. .+.+.++.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~--~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGD--DLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccc--hhccchhhccc
Confidence 5667999999999999999999999999999999998764 79999999999999999999998 88888888875
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE----eeCCccEEEEEecChhHHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQALIQYQLRPSAVV 153 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~----~~~~g~~afV~f~~~~~A~~ 153 (437)
-.-.. . .-|...++++.++..|+.-|++..+.+. ++++.+ .|+.+...-..-.
T Consensus 84 r~G~s----h------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~-~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 84 RCGNS----H------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNF-GFVTYQRLCAVPF 140 (267)
T ss_pred ccCCC----c------------------chhhhhcchhhheeeecccCCCCCccccccccCCccCc-cchhhhhhhcCcH
Confidence 21110 0 0156788899999999999999876554 446666 8888777777777
Q ss_pred HHHHcCCCCC
Q 013749 154 ARSSLQGRNI 163 (437)
Q Consensus 154 A~~~l~~~~~ 163 (437)
++....+...
T Consensus 141 ~~~~y~~l~~ 150 (267)
T KOG4454|consen 141 ALDLYQGLEL 150 (267)
T ss_pred HhhhhcccCc
Confidence 7766655444
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=4.6e-09 Score=73.87 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=48.4
Q ss_pred HHHHHHHHh----ccCCeEEEE-EecC-------CCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 013749 259 EDKLFNLFS----LYGNIIRIK-LLRN-------KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314 (437)
Q Consensus 259 ~~~l~~~F~----~~G~v~~v~-i~~~-------~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 314 (437)
+++|+++|+ +||.|.++. +..+ .+|+|||+|.+.++|..|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999885 3322 2789999999999999999999999999999876
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.4e-09 Score=95.69 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=73.4
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
|.||.-+|||.-|.+-++.+||.-+|+.||+|.+|.|++|+ .||||+|.+.++..+|.-.|... .+..+.|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv--LIDDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV--LIDDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce--eeccceEE
Confidence 57899999999999999999999999999999999999996 78999999999999999888887 99999999
Q ss_pred EEeccc
Q 013749 75 VQFSSH 80 (437)
Q Consensus 75 v~~s~~ 80 (437)
|.||..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999765
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=1.2e-09 Score=107.41 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=135.1
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
..+.||+++||+. .+++.+|+..|..+|.|..|.+-..+ ..++||.|.+...+-.|...+.+..+....+++.++
T Consensus 370 ~atrTLf~Gnl~~-kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDS-KLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCccc-chhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3447999999999 69999999999999999998876643 459999999999999999999999887777776665
Q ss_pred cCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEE
Q 013749 318 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALV 397 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV 397 (437)
.... .+...+++++|+..+....|...|..||.|..+.+- .+..||+|
T Consensus 449 ~~ks------------------------------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--hgq~yayi 496 (975)
T KOG0112|consen 449 QPKS------------------------------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--HGQPYAYI 496 (975)
T ss_pred cccc------------------------------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc--cCCcceee
Confidence 3221 234679999999999999999999999999887762 45679999
Q ss_pred EecCHHHHHHHHHHhCCCccC--CcEEEEEeccCcccc
Q 013749 398 LFETEEQATEALVCKHASSLG--GSIIRISFSQLQSIR 433 (437)
Q Consensus 398 ~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~s~~~~~~ 433 (437)
.|.+...|+.|+..|.|..|+ .++|+|.|+......
T Consensus 497 ~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 497 QYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred ecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 999999999999999999998 479999998876543
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.89 E-value=5.9e-09 Score=85.42 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=69.4
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhcc-CCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEH-GSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+...+++..+|..+-+.++..+|.+| |.|..+++.++ ++||||||+|++++.|.-|-+.||++.+.|+.|.+.|=
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34679999999999999999999998 77788888665 34889999999999999999999999999999999987
Q ss_pred cCc
Q 013749 428 QLQ 430 (437)
Q Consensus 428 ~~~ 430 (437)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 665
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.3e-08 Score=89.74 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=107.6
Q ss_pred CCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecC--------CCC---eEEEEeCCHHHHHHHHHHhcCcee
Q 013749 239 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN--------KPD---HALVQMGDGFQAELAVHFLKGALL 307 (437)
Q Consensus 239 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~--------~~g---~~fV~f~~~~~A~~A~~~l~g~~~ 307 (437)
....-++.|||++||+| ++|++|...|..||.+. |.+... .+| |+|+-|++..+.+.-+... ..
T Consensus 254 ~~~~~S~KVFvGGlp~d-ise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~ 328 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWD-ITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SE 328 (520)
T ss_pred CccccccceeecCCCcc-ccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hh
Confidence 33455578999999995 99999999999999874 344421 166 9999999888766654433 23
Q ss_pred CCcE--EEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhh-ccCCeeEE
Q 013749 308 FGKR--LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNT 384 (437)
Q Consensus 308 ~g~~--l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~ 384 (437)
+... ++|.-.+-........ +..-.+.....+.....-|.+||||+.||--++.++|-.+|+ -||.|..+
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIr-------PW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ya 401 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIR-------PWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYV 401 (520)
T ss_pred cccceEEEEecCcccccceeEE-------eeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEE
Confidence 3333 3333222111100000 000001111111112344689999999999999999999998 69999999
Q ss_pred EEEeeCC----ceEEEEEecCHHHHHHHHHH
Q 013749 385 KLFEMNG----KKQALVLFETEEQATEALVC 411 (437)
Q Consensus 385 ~i~~~~~----~~~afV~f~~~~~A~~A~~~ 411 (437)
-|-.|.. +|-|-|.|.+-.+=.+||+.
T Consensus 402 GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 402 GIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9976532 88999999999999999864
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=1.3e-10 Score=113.61 Aligned_cols=225 Identities=18% Similarity=0.118 Sum_probs=169.5
Q ss_pred EEEcCCCccCcHH-HHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 8 IHVRNVGHEISEN-DLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 8 l~V~~Lp~~~te~-~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
..+.++-+..... ..+..|+.+|.|..|++...+ .++++.+....+++.|..... . .+.++...+..+++
T Consensus 574 ~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~-~--~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 574 KESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAG-G--ALANRSAAVGLADA 650 (881)
T ss_pred hcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccc-c--ccCCccccCCCCCc
Confidence 3455655544444 678899999999999998732 578999999999999977433 2 47777777777666
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHH
Q 013749 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVAR 155 (437)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~ 155 (437)
........- ..........+|+.||+..+.+++|...|+++|.+..+.+. ++-+|. ||++|..+++|.+|+
T Consensus 651 ~~~~~~~kv---s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~-~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 651 EEKEENFKV---SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGK-AYVEFLKPEHAGAAV 726 (881)
T ss_pred hhhhhccCc---CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccc-eeeEeecCCchhhhh
Confidence 542221111 00001122347999999999999999999999988665332 666787 999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCC
Q 013749 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLP 235 (437)
Q Consensus 156 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
....+ .+.+.
T Consensus 727 ~f~d~-~~~gK--------------------------------------------------------------------- 736 (881)
T KOG0128|consen 727 AFRDS-CFFGK--------------------------------------------------------------------- 736 (881)
T ss_pred hhhhh-hhhhh---------------------------------------------------------------------
Confidence 76444 22221
Q ss_pred CCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 013749 236 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKR 311 (437)
Q Consensus 236 ~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 311 (437)
..++|+|.|+ ..|.++++.+++.+|.+.+.+++..+ +|.++|.|.+..+|..+...+.+..+.-+.
T Consensus 737 ---------~~v~i~g~pf-~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 737 ---------ISVAISGPPF-QGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhheeCCCC-CCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 0599999999 79999999999999999988776633 789999999999999999988888887777
Q ss_pred EEEEEccC
Q 013749 312 LEVNFSKH 319 (437)
Q Consensus 312 l~v~~~~~ 319 (437)
+.+..+.+
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 77777655
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=1.7e-08 Score=94.25 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=72.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---C-ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---G-KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~-~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..-+++|||++|...+...||+.+|+.||+|+-.++..+. + +|||||.+.+.++|-+||+.||...|.|+.|.|+-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3446889999998888899999999999999999998652 2 88999999999999999999999999999999998
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87543
No 131
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1e-07 Score=88.85 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=104.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc---------CC---eEEEEecChhHHHHHHHhhccCCCcccC
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---------KN---QALLQMQDVPSAINALQFYTNVQPTIRG 70 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~---------~~---~afV~F~~~~~A~~a~~~~~~~~~~~~g 70 (437)
.=|+.|||++||++++|+.|-..|..||.+ .|..... +| |+|+-|+++.+++.-+.++.. ..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-----~~ 330 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-----GE 330 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-----cc
Confidence 347899999999999999999999999986 3444311 35 999999999999999887653 33
Q ss_pred eEEEEEecccc--cccc---cc--cCC---CCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcC-CCCceeEEEEE-----e
Q 013749 71 RNVYVQFSSHQ--ELTT---ME--QNA---QGRGDEPNRILLVTIHHMLYPITVEVLHQVFS-PHGFVEKIVTF-----Q 134 (437)
Q Consensus 71 ~~l~v~~s~~~--~~~~---~~--~~~---~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~-~~G~i~~i~~~-----~ 134 (437)
..+++..+.+. .+.. +. .+. ......-....+|||++||-.++-++|-.+|. -||.|.-+-|. .
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 33333332221 1100 00 000 00111223344599999999999999999999 79999776543 4
Q ss_pred eCCccEEEEEecChhHHHHHHHH
Q 013749 135 KSAGFQALIQYQLRPSAVVARSS 157 (437)
Q Consensus 135 ~~~g~~afV~f~~~~~A~~A~~~ 157 (437)
-++|- |=|.|.+...=.+|+.+
T Consensus 411 YPkGa-GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGA-GRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCc-ceeeecccHHHHHHHhh
Confidence 46786 99999999999999975
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.68 E-value=1.8e-08 Score=90.67 Aligned_cols=168 Identities=20% Similarity=0.232 Sum_probs=128.0
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec--CC---CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR--NK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
.++++++++.. ++.+.+...++..+|....+.... +. ++++.+.|...+.+..|+.........++.+...+.+
T Consensus 88 ~~~~f~g~~s~-~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 88 SSTFFVGELSE-NIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccc-chhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45899999997 788888999999999766554433 11 8899999999999999999544456666666665544
Q ss_pred CCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEE-ecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ce
Q 013749 319 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH-LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KK 393 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~ 393 (437)
.... ....+..+ ....+..+++ +.+|++.+++++|+..|..+|.|..++++.... ++
T Consensus 167 ~~~~--------~~~n~~~~----------~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg 228 (285)
T KOG4210|consen 167 RRGL--------RPKNKLSR----------LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKG 228 (285)
T ss_pred cccc--------cccchhcc----------cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhh
Confidence 3321 00001111 1112234455 999999999999999999999999999986643 77
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 394 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
+|+|.|.....+..|+.. ++..+.++.+.+.+.++..
T Consensus 229 ~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 229 FAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 999999999999999988 8889999999999988763
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=7.9e-08 Score=89.99 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
...++.|||++|+. .+-..+|+++|++||.|.-.+++.+. +||+||.+.+..+|.++|..|+...|.|+-|.|.
T Consensus 402 s~~gRNlWVSGLSs-tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSS-TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeecccc-chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34557999999997 67788999999999999999998854 7899999999999999999999999999999999
Q ss_pred EccCCC
Q 013749 316 FSKHPN 321 (437)
Q Consensus 316 ~~~~~~ 321 (437)
.++...
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 887543
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=6.6e-08 Score=79.37 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=67.1
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCC-ccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPF-GVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~-G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
+.-.++|+.+|..+-|..+..+|.+| |.|..+++-|+ +|||||+|++.+.|.-|.+.||++ .+.|+.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY--Ll~e~lL~c~ 125 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY--LLMEHLLECH 125 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh--hhhhheeeeE
Confidence 45678999999999999999999998 77777777565 599999999999999999999999 9999999999
Q ss_pred ecccc
Q 013749 77 FSSHQ 81 (437)
Q Consensus 77 ~s~~~ 81 (437)
+..+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86554
No 135
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.65 E-value=3.6e-08 Score=94.61 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee-------CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRI 424 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 424 (437)
|.+.+|||+||++.++++.|...|.+||.|.+++|+-- .++.||||.|.++.||++|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 55688999999999999999999999999999999722 34679999999999999999999999999999999
Q ss_pred EeccC
Q 013749 425 SFSQL 429 (437)
Q Consensus 425 ~~s~~ 429 (437)
-|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99964
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=8.9e-08 Score=80.93 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=115.2
Q ss_pred EEEEecCCCCCCCHHH-H--HHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 246 TVLVSNLNSDRIDEDK-L--FNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~-l--~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
..+++++-. .+..+- | ...|+.|-.....+++++. .+++|+.|.....-..+-..-++..++-..+++.-+.
T Consensus 98 ~p~~~~~g~-~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGA-TVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccc-ccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 455666665 344443 3 6778888777666666644 7799999987777777766666777666666655433
Q ss_pred CCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceE
Q 013749 319 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQ 394 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~ 394 (437)
.-.. .++..+. .-...||-+.|..+++++-|-..|.+|-.....++++++ .+||
T Consensus 177 swed-----------Psl~ew~-----------~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgy 234 (290)
T KOG0226|consen 177 SWED-----------PSLAEWD-----------EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGY 234 (290)
T ss_pred ccCC-----------cccccCc-----------cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccc
Confidence 2211 0111111 123558888899999999999999999998888888763 4889
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 395 ALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 395 afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+||.|.++.++.+|++.|+|+-++.+.|++-=+
T Consensus 235 gfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 235 GFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred eeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 999999999999999999999999998876433
No 137
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.62 E-value=4.6e-08 Score=87.51 Aligned_cols=170 Identities=16% Similarity=0.167 Sum_probs=119.9
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC--------CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--------~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
.|.|.||++ +++.++++.||...|.|..+.++.+. ...|||.|.+...+..|.. |.++.|-++.|.|-..
T Consensus 9 vIqvanisp-sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISP-SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCc-hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 799999999 89999999999999999999998743 4489999999999888766 8888888887777655
Q ss_pred cCCCCCC--------------CCCcccc---ccCCC---CCCCcchhccc--------cccCCCcceEEecCCCCCCCHH
Q 013749 318 KHPNITQ--------------GADTHEY---MNSNL---NRFNRNAAKNY--------RYCCSPTKMIHLSTLPQDVTEE 369 (437)
Q Consensus 318 ~~~~~~~--------------~~~~~~~---~~~~~---~~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~t~~ 369 (437)
-...+.. +.+..+. ...++ ...+....+.. .....-.+|++|.+|+..+-..
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4443311 1010000 00000 00000000000 0000013789999999999999
Q ss_pred HHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC
Q 013749 370 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 418 (437)
Q Consensus 370 ~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~ 418 (437)
++.++|..+|.|.+..+.......++.|+|...-.-..|+ .++|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 9999999999999988876555678889999998888886 56666655
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.61 E-value=4.2e-07 Score=67.01 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=65.8
Q ss_pred ceEEecCCCCCCCHHHHHHhhhcc--CCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccC----CcEEEE
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLG----GSIIRI 424 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~----g~~l~v 424 (437)
.||.|+|||...|.++|.+++... |...-+-++-| -+.|||||.|.++++|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998663 66666666644 23889999999999999999999999986 678899
Q ss_pred EeccCccc
Q 013749 425 SFSQLQSI 432 (437)
Q Consensus 425 ~~s~~~~~ 432 (437)
+||+-|..
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99987643
No 139
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.6e-08 Score=83.28 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=107.2
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
+||||.|+.. .++++-|.++|-+-|+|.+|.|..++ ..||||.|.+..+...|++.+||..+.++.+.+.+-...+
T Consensus 10 rtl~v~n~~~-~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s 88 (267)
T KOG4454|consen 10 RTLLVQNMYS-GVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS 88 (267)
T ss_pred hHHHHHhhhh-hhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCC
Confidence 5899999998 69999999999999999999988754 4499999999999999999999999999998887643221
Q ss_pred CCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEE
Q 013749 322 ITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVL 398 (437)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~ 398 (437)
. . -|...++++-+...|+..|.+..+++..+. ++.++|+.
T Consensus 89 -----------------------h------a--------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~ 131 (267)
T KOG4454|consen 89 -----------------------H------A--------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVT 131 (267)
T ss_pred -----------------------c------c--------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchh
Confidence 0 0 155677888899999999999998887553 36688888
Q ss_pred ecCHHHHHHHHHHhCC
Q 013749 399 FETEEQATEALVCKHA 414 (437)
Q Consensus 399 f~~~~~A~~A~~~l~~ 414 (437)
+...-.--.|+..-.+
T Consensus 132 ~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 132 YQRLCAVPFALDLYQG 147 (267)
T ss_pred hhhhhcCcHHhhhhcc
Confidence 8777666666655444
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=3.3e-07 Score=63.86 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=48.3
Q ss_pred ceEEecCCCCCCCH----HHHHHhhhccC-CeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 355 KMIHLSTLPQDVTE----EEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 355 ~~l~v~nlp~~~t~----~~l~~~f~~~G-~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
..|+|.|||.+... .-|++++..|| +|..+ ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 46999999998875 45667777885 66544 257899999999999999999999999999999999843
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.57 E-value=8.6e-08 Score=89.85 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=61.5
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEc----cC--CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR----AK--NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~----~~--~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+|||+|||.++++++|.+.|+.||+|.+..|.. ++ +||||+|.+.++++.|+++. ++.+++++|.|+-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVEE 363 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEEe
Confidence 3499999999999999999999999998877764 23 89999999999999999964 6789999999985
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=5.4e-09 Score=94.19 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=124.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC-ceeCCcEEEEEEccCCCCCC
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG-ALLFGKRLEVNFSKHPNITQ 324 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~~~~~~~~~ 324 (437)
.+|++||.+ .++..+|..+|...-.-.+-.++. +.||+||.+.+...|.+|++.++| ..+.|+++.+.++.+...
T Consensus 3 klyignL~p-~~~psdl~svfg~ak~~~~g~fl~-k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq-- 78 (584)
T KOG2193|consen 3 KLYIGNLSP-QVTPSDLESVFGDAKIPGSGQFLV-KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ-- 78 (584)
T ss_pred cccccccCC-CCChHHHHHHhccccCCCCcceee-ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH--
Confidence 589999998 799999999997642111111222 268999999999999999999999 558999999988664421
Q ss_pred CCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-ceEEEEEecCHH
Q 013749 325 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEE 403 (437)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~afV~f~~~~ 403 (437)
-++.+.|+|+|+...|+.|-.+..+||.|..+....... .-..-|.|.+.+
T Consensus 79 ----------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~ 130 (584)
T KOG2193|consen 79 ----------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQ 130 (584)
T ss_pred ----------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHH
Confidence 135689999999999999999999999998887643222 335567899999
Q ss_pred HHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 404 QATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 404 ~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
.++-|+..+||..+....++|.|-....+.
T Consensus 131 ~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 131 QHRQAIHKLNGPQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred HHHHHHHhhcchHhhhhhhhcccCchhhhh
Confidence 999999999999999999999987665543
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=3e-07 Score=79.58 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=69.1
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
..|+|.|||..++++||+++|.+||.+..+-+-.++. .|+|-|.|...+||..|++.+||..++|+.|++....+..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 6799999999999999999999999888887765533 6899999999999999999999999999999998866554
Q ss_pred c
Q 013749 432 I 432 (437)
Q Consensus 432 ~ 432 (437)
.
T Consensus 164 ~ 164 (243)
T KOG0533|consen 164 Q 164 (243)
T ss_pred c
Confidence 3
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=2.7e-07 Score=88.84 Aligned_cols=83 Identities=23% Similarity=0.428 Sum_probs=74.4
Q ss_pred CCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC--------CCeEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 013749 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKR 311 (437)
Q Consensus 240 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--------~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 311 (437)
+.+.++.|||+||++ .++++.|...|..||+|.+++++-.. +.|+||-|.+..+|..|++.|+|..+.+..
T Consensus 170 gDP~TTNlyv~Nlnp-sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNP-SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCcccceeeecCCc-cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 366678999999999 79999999999999999999886422 679999999999999999999999999999
Q ss_pred EEEEEccCCCCC
Q 013749 312 LEVNFSKHPNIT 323 (437)
Q Consensus 312 l~v~~~~~~~~~ 323 (437)
+++.|++.-.+.
T Consensus 249 ~K~gWgk~V~ip 260 (877)
T KOG0151|consen 249 MKLGWGKAVPIP 260 (877)
T ss_pred eeeccccccccC
Confidence 999999876653
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.40 E-value=5.6e-07 Score=84.44 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=64.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC--C--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN--G--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
..+|||+|||.++++.+|++.|..||.|....|.... + .+||||+|.+.++++.|+.+- -..++|++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 4559999999999999999999999999887776422 2 389999999999999999655 7778899999997665
Q ss_pred c
Q 013749 430 Q 430 (437)
Q Consensus 430 ~ 430 (437)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 146
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.35 E-value=2.2e-06 Score=74.25 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
....|+|.|||. .++++||+++|..||.+..+.+-.+. .|+|-|.|...++|..|++.+||..+.|+.+++....
T Consensus 82 ~~~~v~v~NL~~-~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPY-GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCc-CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 335899999999 69999999999999998888776655 6899999999999999999999999999999998776
Q ss_pred CCCC
Q 013749 319 HPNI 322 (437)
Q Consensus 319 ~~~~ 322 (437)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 6555
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.28 E-value=9e-07 Score=79.73 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=117.1
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEc------cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR------AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~------~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
.+++|++++-..+.+.+...++...|...+..... .++++.+.|...+.+..|+...... ...++.+.....
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~--~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSK--VLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcc--ccccccccCccc
Confidence 57889999999999998899999999876666543 3699999999999999999976654 455555554443
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHH
Q 013749 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVV 153 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~ 153 (437)
............+. ...+.. ...++++++..+++++|+..|..+|.|..+.+. +..+|+ |||.|....++..
T Consensus 166 ~~~~~~~~n~~~~~-~~~~s~-~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~-a~~~~~~~~~~~~ 242 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRL-SSGPSD-TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGF-AYVDFSAGNSKKL 242 (285)
T ss_pred ccccccccchhccc-ccCccc-cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhh-hhhhhhhchhHHH
Confidence 33221111111011 111111 113499999999999999999999999988765 556788 9999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEEec
Q 013749 154 ARSSLQGRNIYDGCCQLDIQFSN 176 (437)
Q Consensus 154 A~~~l~~~~~~~~~~~l~~~~~~ 176 (437)
++.. +...+.+ +++.+.+..
T Consensus 243 ~~~~-~~~~~~~--~~~~~~~~~ 262 (285)
T KOG4210|consen 243 ALND-QTRSIGG--RPLRLEEDE 262 (285)
T ss_pred Hhhc-ccCcccC--cccccccCC
Confidence 9976 6666654 444555543
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.28 E-value=7.1e-06 Score=57.33 Aligned_cols=69 Identities=26% Similarity=0.377 Sum_probs=47.5
Q ss_pred EEEEecCCCCCCCHHH----HHHHHhccCC-eEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 246 TVLVSNLNSDRIDEDK----LFNLFSLYGN-IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~----l~~~F~~~G~-v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
.|+|.|||. ..+... |+.++..+|. |..| ..+.|.|.|.+++.|..|.+.|+|..+.|++|.|+|.+..
T Consensus 4 ~L~V~NLP~-~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 4 LLYVSNLPT-NKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEES--T-TS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred EEEEecCCC-CCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 799999998 577764 4556667775 5554 2579999999999999999999999999999999998644
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=1.4e-06 Score=75.75 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=69.1
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
...+||+|+.+.+|.+++...|+.||.|..+.++.++ .|+|+||+|.+.+.++.|+. |+|..|.|+.+.|++.+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 4789999999999999999999999999988888664 37899999999999999998 999999999999998765
Q ss_pred c
Q 013749 430 Q 430 (437)
Q Consensus 430 ~ 430 (437)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 4
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.27 E-value=2.4e-06 Score=64.68 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=45.2
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCC-----ccCCcEEEEEe
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS-----SLGGSIIRISF 426 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~-----~~~g~~l~v~~ 426 (437)
+.|+|.+++..++.++|++.|++||.|..|.+. .|-..|+|.|.++++|++|+..+... .+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~--~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS--RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE----TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec--CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 578999999999999999999999999999886 36679999999999999999887443 45566555543
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.21 E-value=5.1e-07 Score=80.95 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=108.9
Q ss_pred EEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeC--------CccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEE
Q 013749 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKS--------AGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~--------~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~ 173 (437)
.|.|.||.+..+.++++.+|...|.|..+.+++.- ... |||.|.+..++..|.. |....+-+. ..+-+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRt-cyVkf~d~~sv~vaQh-Ltntvfvdr-aliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRT-CYVKFLDSQSVTVAQH-LTNTVFVDR-ALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeee-EEEeccCCcceeHHhh-hccceeeee-eEEEEe
Confidence 48899999999999999999999999998887422 123 9999999999988864 554444332 222233
Q ss_pred EecCCc-ceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcc-cchhhhhhhh---cC-CCCCCCC---CCCCCc
Q 013749 174 FSNLDE-LQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQ-MANAAAIAAA---FG-GGLPPGI---TGTNDR 244 (437)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~---~~~~~~ 244 (437)
|..... ....+. .+..+ ...|++..++.-+|+ .+.....+.+ .. ...++.. ....-.
T Consensus 86 ~~~~~~p~r~af~----------~l~~~----navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeir 151 (479)
T KOG4676|consen 86 YGDEVIPDRFAFV----------ELADQ----NAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIR 151 (479)
T ss_pred cCCCCCccHHHHH----------hcCcc----cccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHH
Confidence 322110 000000 00000 000111111100000 0000000000 00 0000000 011222
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCceeC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLF 308 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~fV~f~~~~~A~~A~~~l~g~~~~ 308 (437)
+|++|.+|+. .+...++.++|..+|.|...++-... ..+|-++|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~-~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLIS-AAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchh-hhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 5899999998 59999999999999999877665522 5678899999999999988 7777765
No 152
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.20 E-value=7.7e-06 Score=60.35 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=55.8
Q ss_pred eEEEEcCCCccCcHHHHHHhccCC--ccceEEEEEc------cCCeEEEEecChhHHHHHHHhhccCCCc-c-cCeEEEE
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPF--GVITKLVMLR------AKNQALLQMQDVPSAINALQFYTNVQPT-I-RGRNVYV 75 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~--G~i~~v~i~~------~~~~afV~F~~~~~A~~a~~~~~~~~~~-~-~g~~l~v 75 (437)
+||+|+|||...|.++|.+++... |...=+-+.- +.|||||.|.+.++|.+..+.+++.+.. . ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988642 4432233332 2599999999999999999999888322 1 2444567
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.||..+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 776554
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.18 E-value=5.5e-06 Score=62.74 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=47.7
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccC---CCcccCeEEEEE
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV---QPTIRGRNVYVQ 76 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~---~~~~~g~~l~v~ 76 (437)
.+|.|.|++..++.++|++.|++||.|.=|-+.++-..|||.|.++++|++|+..+... .+.+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47899999999999999999999999998888888889999999999999999987665 566666665554
No 154
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.13 E-value=2.3e-06 Score=72.55 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHhccCCccceEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCCCCCC
Q 013749 23 LQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP 97 (437)
Q Consensus 23 ~~~f~~~G~i~~v~i~~~~-----~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 97 (437)
...|+.+-......+++++ +++|+.|.....-.++-..-+++ +++-.+|++.-+.. +..... ..-.
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~gts--wedPsl-----~ew~ 187 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAAGTS--WEDPSL-----AEWD 187 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccc--cccCcceeeccccc--cCCccc-----ccCc
Confidence 5566666666677777764 88999998777777765544444 45555554442211 111110 0112
Q ss_pred CcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEE-----EEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEE
Q 013749 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKI-----VTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDI 172 (437)
Q Consensus 98 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i-----~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~ 172 (437)
+.-.+||.+.|--+++++.|-..|.+|-....- ...++++|| +||.|.++.++..|+..|+|.....+.+.|+-
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgy-gfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGY-GFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccc-eeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 334569999999999999999999998655432 345889998 99999999999999999999888776665554
Q ss_pred E
Q 013749 173 Q 173 (437)
Q Consensus 173 ~ 173 (437)
.
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 3
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=4.5e-07 Score=82.05 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=115.9
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccccccc
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~ 86 (437)
.+|++||.+.++..||..+|....--.+=.++-..|||||.+.+..-|.+|++.+++. ..+.|+.+.+.++.++.....
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~sv~kkqrsr 81 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEHSVPKKQRSR 81 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchh-hhhcCceeeccchhhHHHHhh
Confidence 4799999999999999999975421122223334589999999999999999999886 479999999999887654332
Q ss_pred ccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEe-eCCccEEEEEecChhHHHHHHHHcCCCCCCC
Q 013749 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-KSAGFQALIQYQLRPSAVVARSSLQGRNIYD 165 (437)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~-~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~ 165 (437)
. +.|.|+|+...++-|..+...||.++.+.... .+..-..-|+|...+.++.|+..++|..+..
T Consensus 82 k---------------~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 82 K---------------IQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred h---------------hhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 2 77999999999999999999999998875432 1111113468999999999999999977754
Q ss_pred CCceEEEEEe
Q 013749 166 GCCQLDIQFS 175 (437)
Q Consensus 166 ~~~~l~~~~~ 175 (437)
..+++.|-
T Consensus 147 --~~~k~~Yi 154 (584)
T KOG2193|consen 147 --QHLKVGYI 154 (584)
T ss_pred --hhhhcccC
Confidence 23344444
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.01 E-value=8.9e-06 Score=53.05 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=45.6
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHH
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINAL 58 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~ 58 (437)
++.|-|.|.|++..+. ++.+|..||+|+++.+-.+....+|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4678899999877654 5558889999999999988899999999999999985
No 157
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.87 E-value=2.3e-05 Score=68.30 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
+.+.+||+|+.+ .+|.+++..+|+.+|.|..+.+..+. +|++||+|.+.+.+..|+. |+|..+.|+.+.+.+.
T Consensus 100 d~~sv~v~nvd~-~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGNVDF-LVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEecccc-ccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345899999999 79999999999999999888777754 7899999999999999999 9999999999999998
Q ss_pred cCC
Q 013749 318 KHP 320 (437)
Q Consensus 318 ~~~ 320 (437)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=8.4e-05 Score=48.48 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHH
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 299 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~ 299 (437)
++|.|.|.+++ ..+.+...|..||.|.++.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~~-~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVPES-TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcCCC-CcEEEEEECCHHHHHhhC
Confidence 47999999973 56778889999999999877743 679999999999999985
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.73 E-value=0.00017 Score=53.63 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=52.2
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEE------------EecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIK------------LLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRL 312 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~------------i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 312 (437)
+.|.|.++|+ .....|.+.|++||.|.+.. -.....++.-|+|+++.+|.+|++ .||..+.|.-+
T Consensus 7 ~wVtVFGfp~--~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 7 TWVTVFGFPP--SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CEEEEE---G--GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred eEEEEEccCH--HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4799999997 46789999999999997764 122337799999999999999999 89999988744
Q ss_pred -EEEEc
Q 013749 313 -EVNFS 317 (437)
Q Consensus 313 -~v~~~ 317 (437)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45554
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.62 E-value=8.6e-05 Score=65.65 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=60.5
Q ss_pred EEEEecCCCCCCCHHH----H--HHHHhccCCeEEEEEecCC------CC--eEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 013749 246 TVLVSNLNSDRIDEDK----L--FNLFSLYGNIIRIKLLRNK------PD--HALVQMGDGFQAELAVHFLKGALLFGKR 311 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~----l--~~~F~~~G~v~~v~i~~~~------~g--~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 311 (437)
-+||-+|++. +-.++ | .++|.+||.|.++-+-+.. .+ -.||.|.+.++|..||...+|..+.||.
T Consensus 116 LvYVigi~pk-va~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 116 LVYVIGIPPK-VADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred eeEEecCCCC-CCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 6899999994 55554 2 5689999999988665522 22 2499999999999999999999999999
Q ss_pred EEEEEccCC
Q 013749 312 LEVNFSKHP 320 (437)
Q Consensus 312 l~v~~~~~~ 320 (437)
|+..|++.+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999998744
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.61 E-value=0.00017 Score=63.77 Aligned_cols=78 Identities=15% Similarity=0.318 Sum_probs=63.5
Q ss_pred ceEEecCCCCCCCHHH----H--HHhhhccCCeeEEEEEeeCC-----ce--EEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 355 KMIHLSTLPQDVTEEE----I--VSHLEEHGSIVNTKLFEMNG-----KK--QALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~----l--~~~f~~~G~v~~~~i~~~~~-----~~--~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
+-+||-+||+.+-.++ | .++|.+||+|..+.+-+... -+ -.+|.|.+.|||.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5689999999876555 3 36999999999988854321 11 2499999999999999999999999999
Q ss_pred EEEEeccCccc
Q 013749 422 IRISFSQLQSI 432 (437)
Q Consensus 422 l~v~~s~~~~~ 432 (437)
|+..|.+.+=+
T Consensus 195 lkatYGTTKYC 205 (480)
T COG5175 195 LKATYGTTKYC 205 (480)
T ss_pred EeeecCchHHH
Confidence 99999887643
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.57 E-value=0.0002 Score=61.22 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHH
Q 013749 293 FQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 372 (437)
Q Consensus 293 ~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 372 (437)
.-|..|-..|.+....|+.|+|.|+.. ..|+|.||+..++-+.|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------------------a~l~V~nl~~~~sndll~ 49 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------------------------------AELYVVNLMQGASNDLLE 49 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------------------------------ceEEEEecchhhhhHHHH
Confidence 457778888999999999999999763 249999999999999999
Q ss_pred HhhhccCCeeEEEEEee-C--CceEEEEEecCHHHHHHHHHHhCCCcc
Q 013749 373 SHLEEHGSIVNTKLFEM-N--GKKQALVLFETEEQATEALVCKHASSL 417 (437)
Q Consensus 373 ~~f~~~G~v~~~~i~~~-~--~~~~afV~f~~~~~A~~A~~~l~~~~~ 417 (437)
+-|+.||.|....++-+ . ..+-++|+|...-.|.+|+..++..-+
T Consensus 50 ~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 50 QAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred HhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 99999999988666643 3 356899999999999999998854433
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.56 E-value=3.9e-05 Score=65.64 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=51.9
Q ss_pred HHHHHhhh-ccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 369 EEIVSHLE-EHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 369 ~~l~~~f~-~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+|+...|+ .||.|.++++-.+-+ .|-++|.|...++|++|++.||+.++.|++|+.+|+.--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44555555 799999998875433 778999999999999999999999999999999997643
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.53 E-value=5.1e-05 Score=64.70 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=59.8
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC------------c----eEEEEEecCHHHHHHHHHHhCCCcc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG------------K----KQALVLFETEEQATEALVCKHASSL 417 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~------------~----~~afV~f~~~~~A~~A~~~l~~~~~ 417 (437)
+-+||++|||+.+...-|+++|++||.|-+|.+-+... + .-|-|+|.+...|.+....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 47899999999999999999999999999998875421 1 1589999999999999999999999
Q ss_pred CCcE
Q 013749 418 GGSI 421 (437)
Q Consensus 418 ~g~~ 421 (437)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9863
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.49 E-value=6.2e-05 Score=68.87 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=55.7
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-------------------CCeEEEEecChhHHHHHHHhhccC
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------------------KNQALLQMQDVPSAINALQFYTNV 64 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-------------------~~~afV~F~~~~~A~~a~~~~~~~ 64 (437)
|+|+|.+-|||.+-.-+.|+++|..+|.|..|+|++= +-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 8999999999999999999999999999999999842 357999999999999999988654
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00011 Score=66.14 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=68.0
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeE--------EEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
..+|||.+||..+++++|.++|.++|.|.. +.|.++ ..|+-|.|.|.+...|+.|+.-++++.+.|..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 478999999999999999999999998833 334433 23789999999999999999999999999999
Q ss_pred EEEEeccCcc
Q 013749 422 IRISFSQLQS 431 (437)
Q Consensus 422 l~v~~s~~~~ 431 (437)
|+|.+++.++
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999998765
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.42 E-value=0.00039 Score=60.49 Aligned_cols=78 Identities=29% Similarity=0.470 Sum_probs=63.1
Q ss_pred CCcceEEecCC--CCCCC---HHHHHHhhhccCCeeEEEEEeeCC-----ceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 352 SPTKMIHLSTL--PQDVT---EEEIVSHLEEHGSIVNTKLFEMNG-----KKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 352 ~~~~~l~v~nl--p~~~t---~~~l~~~f~~~G~v~~~~i~~~~~-----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
.|+++|.++|. +-++. ++++++.++.||+|..|.|+...+ ----||+|.+.++|.+|+-.|||..++||.
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 45566777776 33454 578999999999999999875433 225799999999999999999999999999
Q ss_pred EEEEeccC
Q 013749 422 IRISFSQL 429 (437)
Q Consensus 422 l~v~~s~~ 429 (437)
++..|-..
T Consensus 359 v~A~Fyn~ 366 (378)
T KOG1996|consen 359 VSACFYNL 366 (378)
T ss_pred eeheeccH
Confidence 99998543
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.38 E-value=0.00088 Score=49.90 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=52.5
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEE-----------EeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEE
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL-----------FEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 423 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i-----------~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 423 (437)
+.|.|-+.|+. ....|.+.|++||.|.+..- ....+.+..-|.|+++.+|++|| .-||..+.|..+-
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 67888899887 56788889999999988750 11135779999999999999998 8899999987554
Q ss_pred -EEec
Q 013749 424 -ISFS 427 (437)
Q Consensus 424 -v~~s 427 (437)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 6665
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.0027 Score=54.52 Aligned_cols=87 Identities=21% Similarity=0.318 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE
Q 013749 54 AINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (437)
Q Consensus 54 A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~ 133 (437)
|..|...|.+. ...|+.++|.|+.+.. |+|.||..-+..|.+.+.|+.||+|+.-++.
T Consensus 7 ae~ak~eLd~~--~~~~~~lr~rfa~~a~--------------------l~V~nl~~~~sndll~~~f~~fg~~e~av~~ 64 (275)
T KOG0115|consen 7 AEIAKRELDGR--FPKGRSLRVRFAMHAE--------------------LYVVNLMQGASNDLLEQAFRRFGPIERAVAK 64 (275)
T ss_pred HHHHHHhcCCC--CCCCCceEEEeeccce--------------------EEEEecchhhhhHHHHHhhhhcCccchheee
Confidence 44444456666 8999999999987742 8999999999999999999999999884443
Q ss_pred ----eeCCccEEEEEecChhHHHHHHHHcCCCCC
Q 013749 134 ----QKSAGFQALIQYQLRPSAVVARSSLQGRNI 163 (437)
Q Consensus 134 ----~~~~g~~afV~f~~~~~A~~A~~~l~~~~~ 163 (437)
++..+ .++|.|...-.|.+|+..+.-.-+
T Consensus 65 vD~r~k~t~-eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 65 VDDRGKPTR-EGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ecccccccc-cchhhhhcchhHHHHHHHhccCcc
Confidence 44445 489999999999999988754334
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.32 E-value=0.0018 Score=51.29 Aligned_cols=58 Identities=22% Similarity=0.465 Sum_probs=47.3
Q ss_pred HHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCC
Q 013749 261 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 322 (437)
Q Consensus 261 ~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 322 (437)
+|.+.|..||.+.-+++..+ ...|.|.+.++|.+|+. ++|..++|+.|+|.+..+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~---~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD---TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT---CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC---eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 78889999999988887765 79999999999999999 999999999999999877654
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.26 E-value=0.00013 Score=62.23 Aligned_cols=66 Identities=12% Similarity=0.276 Sum_probs=57.4
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------------------CeEEEEecChhHHHHHHHhhccCCC
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------------------NQALLQMQDVPSAINALQFYTNVQP 66 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------------------~~afV~F~~~~~A~~a~~~~~~~~~ 66 (437)
+-+||+++||+.+.-..||++|..||.|-.|.+-+.. .-|+|+|.+...|.+....||++
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~-- 151 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT-- 151 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC--
Confidence 3589999999999999999999999999988886431 11789999999999999999999
Q ss_pred cccCeE
Q 013749 67 TIRGRN 72 (437)
Q Consensus 67 ~~~g~~ 72 (437)
.++|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 788765
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.24 E-value=0.0021 Score=50.91 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=53.3
Q ss_pred CCCCceEEEEcCCC------ccCcH---HHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCe
Q 013749 1 MTEPSKVIHVRNVG------HEISE---NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp------~~~te---~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~ 71 (437)
|.||.-||.|.=+. ..+.+ .+|.+.|..||.++=|++.-+ .-+|+|.+.+.|-+|+. +++. .++|+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~--~v~g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGI--QVNGR 97 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCS--EETTE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHc-cCCc--EECCE
Confidence 67899999988776 22332 357778889998876666654 68999999999999998 6777 89999
Q ss_pred EEEEEecccccc
Q 013749 72 NVYVQFSSHQEL 83 (437)
Q Consensus 72 ~l~v~~s~~~~~ 83 (437)
.|.|..-.+.+.
T Consensus 98 ~l~i~LKtpdW~ 109 (146)
T PF08952_consen 98 TLKIRLKTPDWL 109 (146)
T ss_dssp EEEEEE------
T ss_pred EEEEEeCCccHH
Confidence 999997666443
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0011 Score=63.08 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=58.6
Q ss_pred cceEEecCCCCC--CC----HHHHHHhhhccCCeeEEEEEee---CCceEEEEEecCHHHHHHHHHHhCCCccC-CcEEE
Q 013749 354 TKMIHLSTLPQD--VT----EEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLG-GSIIR 423 (437)
Q Consensus 354 ~~~l~v~nlp~~--~t----~~~l~~~f~~~G~v~~~~i~~~---~~~~~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~ 423 (437)
..+|.|-|+|.- .. ..-|.++|+++|+|....++.+ ..+|+.|++|++..+|+.|+++|||+.|. .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 478999999862 11 3466779999999999988844 23889999999999999999999999997 67766
Q ss_pred EE
Q 013749 424 IS 425 (437)
Q Consensus 424 v~ 425 (437)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 64
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.17 E-value=0.002 Score=45.35 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=42.4
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhcc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~ 63 (437)
.+.+|. .|++|.-.||.++|++||.| .|..+.|. -|||...+.+.|..|++.+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-cEEEEeecHHHHHHHHHHhcc
Confidence 344555 99999999999999999998 67777664 699999999999999987653
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.16 E-value=0.00029 Score=64.57 Aligned_cols=67 Identities=25% Similarity=0.268 Sum_probs=56.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee-----C------------CceEEEEEecCHHHHHHHHHHhCC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-----N------------GKKQALVLFETEEQATEALVCKHA 414 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-----~------------~~~~afV~f~~~~~A~~A~~~l~~ 414 (437)
.++++|.+-|||.+-.-+.|.++|+.+|.|..|+|..- . .+-+|+|+|...+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999998888999999999999999999732 0 134899999999999999988866
Q ss_pred CccC
Q 013749 415 SSLG 418 (437)
Q Consensus 415 ~~~~ 418 (437)
..-+
T Consensus 309 e~~w 312 (484)
T KOG1855|consen 309 EQNW 312 (484)
T ss_pred hhhh
Confidence 5433
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.06 E-value=0.00033 Score=60.09 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=52.2
Q ss_pred HHHHHHh-ccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 261 KLFNLFS-LYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 261 ~l~~~F~-~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
++...|+ +||.|+.+.+..+- .|-++|+|...++|.+|++.|||..+.|++|...++.-..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 5555556 99999998776643 7899999999999999999999999999999999977543
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.04 E-value=0.0017 Score=56.59 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=52.5
Q ss_pred HHHHHHHHhccCCeEEEEEecCC------CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 013749 259 EDKLFNLFSLYGNIIRIKLLRNK------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319 (437)
Q Consensus 259 ~~~l~~~F~~~G~v~~v~i~~~~------~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 319 (437)
++++.+.+.+||.|.+|.|+... .--.||+|..+++|.+|+-.|||..|+|+.+...|-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 45888999999999999887643 23579999999999999999999999999999887553
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0037 Score=41.73 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=44.8
Q ss_pred ceEEecCCCCCCCHHHHHHhhhcc---CCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHh
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEH---GSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l 412 (437)
..|||+++ .+++.+||+.+|..| .....+.++.+ .-|-|-|.+.+.|.+|+..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD---tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD---TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC---CcEEEEECCHHHHHHHHHcC
Confidence 56999999 669999999999999 23568888853 34788899999999999765
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.83 E-value=0.0066 Score=42.75 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=42.8
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhC
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~ 413 (437)
.+.||. .|.++...||.++|++||.|. |.++ +-..|||...+++.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi---~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWI---NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEE---CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEE---cCCcEEEEeecHHHHHHHHHHhc
Confidence 667787 999999999999999999984 5555 45679999999999999998875
No 180
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0054 Score=58.53 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=57.2
Q ss_pred cEEEEecCCCCCCCHH-------HHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeC-CcEE
Q 013749 245 CTVLVSNLNSDRIDED-------KLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLF-GKRL 312 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~-------~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l 312 (437)
.+|+|.|.|. +.++ -|..+|+++|.+..+.+..+. +|+.|++|.+..+|..|++.|||..+. ++.+
T Consensus 59 ~vVvv~g~Pv--V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPV--VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcc--cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4899999995 5554 456789999999988777544 789999999999999999999998885 4566
Q ss_pred EEEE
Q 013749 313 EVNF 316 (437)
Q Consensus 313 ~v~~ 316 (437)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6653
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.64 E-value=0.0013 Score=62.94 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhcc-CCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCC-cccCeEEEEEeccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQ-PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQP-TIRGRNVYVQFSSH 80 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~-~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~-~~~g~~l~v~~s~~ 80 (437)
++|.+|+|.||=.-+|.-.|+.++. ..|.|++.+|-+-|..|||.|.+.++|.+.+.+||+.+- .-+++.|.+.|...
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 5688999999999999999999998 567788887777788999999999999999999998831 13567777887654
Q ss_pred c
Q 013749 81 Q 81 (437)
Q Consensus 81 ~ 81 (437)
.
T Consensus 522 d 522 (718)
T KOG2416|consen 522 D 522 (718)
T ss_pred h
Confidence 3
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.61 E-value=0.002 Score=61.71 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhc-cCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC---CcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEE-HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG---GSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~~ 426 (437)
..++++|||.||---.|.-+|+.++.+ .|.|... +|. +=|.-|||.|.+.++|.+-+.+|||..+- +++|.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 356899999999777899999999985 5555555 552 34677999999999999999999998874 78999999
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
.....
T Consensus 519 ~~~de 523 (718)
T KOG2416|consen 519 VRADE 523 (718)
T ss_pred cchhH
Confidence 86544
No 183
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.012 Score=51.70 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=54.1
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 311 (437)
...|.|.++|+ -.-.-|..+|+++|.|.+.... ....+..|.|.+..+|++|+. .||..|+|..
T Consensus 197 D~WVTVfGFpp--g~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPP--GQVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCc--cchhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 46899999998 4567899999999999876444 446799999999999999999 7999998864
No 184
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.50 E-value=0.003 Score=57.06 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=66.9
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEE--------EEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeC
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR--------IKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLF 308 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~ 308 (437)
....++||-+||. .+++++|.++|.+.|.|.. +++.+++ ++-|.|.|.++..|+.|+..+++..|.
T Consensus 64 s~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 3445899999996 8999999999999998753 3344433 889999999999999999999999999
Q ss_pred CcEEEEEEccCCC
Q 013749 309 GKRLEVNFSKHPN 321 (437)
Q Consensus 309 g~~l~v~~~~~~~ 321 (437)
|..|+|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998876554
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.49 E-value=0.018 Score=38.48 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=45.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHhcc---CCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHh
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLY---GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 302 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~---G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l 302 (437)
.|+|.|+. .++.++|+.+|..| ....+|.++.| ..|-|-|.+.+.|.+|+..|
T Consensus 7 avhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 79999998 48999999999999 13457888887 47899999999999999764
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.35 E-value=0.02 Score=44.65 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=57.6
Q ss_pred CCCCceEEEEcCCCccCcH-HHHH---HhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 1 MTEPSKVIHVRNVGHEISE-NDLL---QLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te-~~l~---~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
+.+|=.||.|+=|.+.+.. +||+ ..++.||+|..|... ++-.|.|.|.+..+|-+|+.+++.. .-|..+++.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~---~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSR---APGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcCC---CCCceEEee
Confidence 3567788889888777654 4444 456789999888765 4567999999999999999988764 678888888
Q ss_pred ec
Q 013749 77 FS 78 (437)
Q Consensus 77 ~s 78 (437)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 73
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.28 E-value=0.03 Score=43.77 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCCcceEEecCCCCCCC-HHHHHH---hhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVT-EEEIVS---HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t-~~~l~~---~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.+|-.||.|+=|..++. .+|++. ..+.||.|.+|... |+..|.|.|.+..+|-+|+.+.+. ...|..++.+|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 46678898988877765 345544 55779999999997 788999999999999999999887 56688888887
Q ss_pred ccC
Q 013749 427 SQL 429 (437)
Q Consensus 427 s~~ 429 (437)
-+.
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 543
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.79 E-value=0.017 Score=55.18 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=58.6
Q ss_pred ceEEEEcCCCccCcHHHHHHhccC--CccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQP--FGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~--~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++|.|+-||...-+|+++.+|+- +-++.+|..--+-+ .||+|++..||+.|.++|......|.|++|-..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 478899999999999999999974 55677887765433 799999999999999998776557888887544
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.50 E-value=0.038 Score=46.42 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=47.9
Q ss_pred CHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhC--CCccCCcEEEEEeccCccc
Q 013749 367 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH--ASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 367 t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~~s~~~~~ 432 (437)
..+.|+++|..|+.+.....++ +-+=..|.|.+.++|.+|...|+ +..+.|..+++.|++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 4589999999999998887773 55558999999999999999999 9999999999999976654
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.44 E-value=0.048 Score=52.22 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=53.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhc--cCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCC--CccCCcEEE
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEE--HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIR 423 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~--~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~ 423 (437)
+|.+.|+-||..+-+++++-+|.. |-++++|...-+. -.||.|++..||+.|.+.|.. +.|-|+.|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 478999999999999999999954 8899999997432 369999999999999987754 234465443
No 191
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.39 E-value=0.012 Score=59.05 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=60.7
Q ss_pred EecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC--CcEEEEEeccCcc
Q 013749 358 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG--GSIIRISFSQLQS 431 (437)
Q Consensus 358 ~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~s~~~~ 431 (437)
++.|.+-..+-.-|-.+|++||.|.+...++ +-..|.|+|.+.+.|..|+++++|+.+. |-+.+|.||+.-.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3444445566788999999999999998874 5778999999999999999999999875 8999999998643
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.11 E-value=0.21 Score=38.07 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=47.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccC-CeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYG-NIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFG 309 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g 309 (437)
.+.+--.|+..++.++|..+.+.+- .|..++++++. +-.++++|.+.++|..-...+||..|..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4444455553566667776666665 47788888876 3488999999999999999999988743
No 193
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.98 E-value=0.014 Score=58.54 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=70.8
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccccccc
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~ 86 (437)
...+.|.+-..+-.-|-.+|..||.|.+.+.+|+-.+|.|+|.+.+.|..|++++++....+-|-+.+|.+++.-++...
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep 379 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEP 379 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccC
Confidence 34455666677778899999999999999999999999999999999999999999998889999999999987666544
Q ss_pred c
Q 013749 87 E 87 (437)
Q Consensus 87 ~ 87 (437)
.
T Consensus 380 ~ 380 (1007)
T KOG4574|consen 380 P 380 (1007)
T ss_pred C
Confidence 4
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.97 E-value=0.01 Score=53.44 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=62.2
Q ss_pred ceEEecCCCCCCC-HHHHH--HhhhccCCeeEEEEEeeC-------CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEE
Q 013749 355 KMIHLSTLPQDVT-EEEIV--SHLEEHGSIVNTKLFEMN-------GKKQALVLFETEEQATEALVCKHASSLGGSIIRI 424 (437)
Q Consensus 355 ~~l~v~nlp~~~t-~~~l~--~~f~~~G~v~~~~i~~~~-------~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 424 (437)
+-+||-+|+..+- |..|+ +.|.+||.|..+.+..+. +.+-++|.|...++|..|+...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4577888887654 44444 388999999999887543 1336999999999999999999999999999999
Q ss_pred EeccCccc
Q 013749 425 SFSQLQSI 432 (437)
Q Consensus 425 ~~s~~~~~ 432 (437)
++...+-+
T Consensus 158 ~~gttkyc 165 (327)
T KOG2068|consen 158 SLGTTKYC 165 (327)
T ss_pred hhCCCcch
Confidence 88877643
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.95 E-value=0.082 Score=44.46 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred cHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhc--cCCCcccCeEEEEEecccc
Q 013749 18 SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT--NVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 18 te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~--~~~~~~~g~~l~v~~s~~~ 81 (437)
..+.|+++|..++.+.....++.-+-..|.|.+.++|++|+..++ +. .+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~--~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGT--SFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TS--EETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccc--ccCCCceEEEEcccc
Confidence 347899999999999999999998889999999999999999998 66 899999999998543
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.80 E-value=0.022 Score=51.13 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=57.2
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCcc--ceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGV--ITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~--i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
-.+||+||-+++|++||.+.+...|. +.+++.+-+ ||||.|...+..+.++.++.|-.. .++|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k--~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK--TIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc--eecCCCCeee
Confidence 46899999999999999999987765 677777754 599999999999999999988877 7877654443
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.69 E-value=0.034 Score=46.58 Aligned_cols=60 Identities=8% Similarity=0.206 Sum_probs=41.7
Q ss_pred ceEEEEcCCCccCcHHHHHHhccC-CccceEEEEEc----cC-------CeEEEEecChhHHHHHHHhhccC
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQP-FGVITKLVMLR----AK-------NQALLQMQDVPSAINALQFYTNV 64 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~-~G~i~~v~i~~----~~-------~~afV~F~~~~~A~~a~~~~~~~ 64 (437)
...|.||.||+..||+++.+.+++ ++.-.+...+. +. .-|||.|.+.+++......++++
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 357889999999999999999988 66652222222 11 45999999999999999977765
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.55 E-value=0.24 Score=37.72 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=45.3
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCC-ccceEEEEEccC----CeEEEEecChhHHHHHHHhhccCC
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPF-GVITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQ 65 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~-G~i~~v~i~~~~----~~afV~F~~~~~A~~a~~~~~~~~ 65 (437)
+..+.+...|+-++-++|..+.+++ ..|..++|++|. -.+.+.|.+.++|....+.+||++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 3444444445555556677777776 447889999874 578999999999999999988873
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.23 E-value=0.1 Score=48.81 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=56.0
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCc-cceEEEEEccC----CeEEEEecChhHHHHHHHhhccCC
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQ 65 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G-~i~~v~i~~~~----~~afV~F~~~~~A~~a~~~~~~~~ 65 (437)
.+++.|+|-.+|..+|-.||..++..|- .|.+++++||+ -.+.+.|.+..+|....+.+||.+
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCc
Confidence 4589999999999999999999998774 48999999974 568899999999999999988873
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.16 E-value=2.5 Score=37.72 Aligned_cols=179 Identities=16% Similarity=0.228 Sum_probs=110.0
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC------------CCeEEEEeCCHHHHHHH----HHHhcC--c
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK------------PDHALVQMGDGFQAELA----VHFLKG--A 305 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~------------~g~~fV~f~~~~~A~~A----~~~l~g--~ 305 (437)
++.|...|+.. .++-..+...|-+||+|++|.++.+. .....+.|-+.+.+..- ++.|+. .
T Consensus 15 TRSLLfeNv~~-sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNN-SIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccc-cccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35788999997 69999999999999999999998854 35789999999887653 344443 4
Q ss_pred eeCCcEEEEEEccCCCCCC---CCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHH----hhhcc
Q 013749 306 LLFGKRLEVNFSKHPNITQ---GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS----HLEEH 378 (437)
Q Consensus 306 ~~~g~~l~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~----~f~~~ 378 (437)
.+.-..|.+.|....-... .....++.. .....-+-.-.....+|.|.|. +...+..+++.+ +...-
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~-----~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSD-----YLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhh-----HHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 4666778888765321110 111011100 0000000000122345778875 334454433322 22223
Q ss_pred CC----eeEEEEEeeC------CceEEEEEecCHHHHHHHHHHhC--CCccC-CcEEEEEeccC
Q 013749 379 GS----IVNTKLFEMN------GKKQALVLFETEEQATEALVCKH--ASSLG-GSIIRISFSQL 429 (437)
Q Consensus 379 G~----v~~~~i~~~~------~~~~afV~f~~~~~A~~A~~~l~--~~~~~-g~~l~v~~s~~ 429 (437)
+. +.++.++.-. ++.||.+.|-+..-|...+.-+. +...+ .++..|++...
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~ 231 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPH 231 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCc
Confidence 43 3556665321 26699999999999999998875 55565 78888887653
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.76 E-value=0.17 Score=42.39 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=51.4
Q ss_pred ceEEecCCCCCCCHHHHHHhhhc-cCCeeEEEEEe----eCC-----ceEEEEEecCHHHHHHHHHHhCCCccCC-----
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEE-HGSIVNTKLFE----MNG-----KKQALVLFETEEQATEALVCKHASSLGG----- 419 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~----~~~-----~~~afV~f~~~~~A~~A~~~l~~~~~~g----- 419 (437)
..|.|++||+++||+++.+.+++ ++.-....... ... -.-|+|.|.+.++...-...++|+.+.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 57999999999999999998887 66662222211 111 2369999999999999999999977642
Q ss_pred cEEEEEeccCccc
Q 013749 420 SIIRISFSQLQSI 432 (437)
Q Consensus 420 ~~l~v~~s~~~~~ 432 (437)
.+-.|+||-.+-+
T Consensus 88 ~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 88 YPAVVEFAPYQKV 100 (176)
T ss_dssp EEEEEEE-SS---
T ss_pred cceeEEEcchhcc
Confidence 3778888877554
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.35 E-value=0.3 Score=43.32 Aligned_cols=65 Identities=12% Similarity=0.270 Sum_probs=52.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEE
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 422 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l 422 (437)
..+|.|-+.|+. .-.-|..+|++||.|.+.... +.-.+-.|.|.++-+|++|| .-||+.|+|-.+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KAL-skng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhh-hhcCeeeccceE
Confidence 467888888775 456788899999999887775 34558999999999999998 788988887543
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.77 E-value=0.67 Score=31.60 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 365 DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 365 ~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
.++-++++..+..|+-. +|.. ...|| ||-|.+.++|+++....+|..+.+.+|.++
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~-d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRD-DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEe-cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 57789999999988754 2222 23566 899999999999999999999988887653
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.43 E-value=0.44 Score=44.82 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=57.1
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCC-eEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCC
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGN-IIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFG 309 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~-v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g 309 (437)
++.|+|-.+|. .++..||..++..+-. |.++++++++ +=.++|+|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaVP~-~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPA-YMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccc-cccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67999999998 7999999999988764 7889999976 3378999999999999999999988754
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.42 E-value=0.94 Score=31.81 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHhccCC-----eEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 255 DRIDEDKLFNLFSLYGN-----IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 255 ~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
+.++..+|..++...+. |-.+.+..+ ++||+-. .+.|..++..|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~---~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN---FSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS----EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee---EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46888999998887754 567777765 9999985 45788899999999999999998764
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.37 E-value=0.18 Score=49.61 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=100.2
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
++.-++||+|+.. .+..+-++.+....|.|.+++... |||+.|..+.-+..|+..++-..++|..+.+.--....
T Consensus 38 ~~~~~vfv~~~~~-~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 38 PPRDTVFVGNISY-LVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred CCCceeEecchhh-hhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 3444899999997 799999999999999988765544 99999999999999999999999988877665432111
Q ss_pred CCC-CCCccccccCCCCCCCcchhccccccCCC---cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee---CCceE
Q 013749 322 ITQ-GADTHEYMNSNLNRFNRNAAKNYRYCCSP---TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGKKQ 394 (437)
Q Consensus 322 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~~~ 394 (437)
.+. ...... .+....+.| .+-..|.|+|-...+......+.--+...+..-... ..+.+
T Consensus 113 ~n~~k~~~~~--------------~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~d~h~~e~ 178 (668)
T KOG2253|consen 113 ENADKEKSIA--------------NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEADDHCLEL 178 (668)
T ss_pred cCccccccch--------------hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHHHHHHHHH
Confidence 110 000000 000011222 355778888887777776666654443333222211 11234
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 395 ALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 395 afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+|-+|.+...+-.+....+.....++..+-.++
T Consensus 179 ~~~~~~s~~~~~~~~~~~~~~~e~~~~s~~~~s 211 (668)
T KOG2253|consen 179 EKTETESNSALSKEAESKKSPFEDTKDSKRSFS 211 (668)
T ss_pred HHhhcccccccCcccccccCchhhhchhhhhhc
Confidence 555555555555554444443333444444433
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.78 E-value=0.068 Score=48.25 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=59.6
Q ss_pred EEEEecCCCCCCCHHHH--HHHHhccCCeEEEEEecCC--------CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 246 TVLVSNLNSDRIDEDKL--FNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l--~~~F~~~G~v~~v~i~~~~--------~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
-+||-+|+.+-..+..| .+.|.+||.|.+|.+..+. ..-++|.|...++|..|+...+|..+.|+.++..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 57888999743334444 3479999999988776643 2357999999999999999999999999998888
Q ss_pred EccCCC
Q 013749 316 FSKHPN 321 (437)
Q Consensus 316 ~~~~~~ 321 (437)
++....
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 876543
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.60 E-value=0.13 Score=48.48 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=61.6
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
+.|-+.-.|+..-+-++|...|.+||.|..|.+-.. .-.|.|.|.+..+|-.|.. ..+..|+++.|+|.|-....
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 455555566555677899999999999999877654 4579999999999988777 79999999999999987654
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.60 E-value=0.27 Score=35.62 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=45.9
Q ss_pred EEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhc
Q 013749 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121 (437)
Q Consensus 44 afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f 121 (437)
|.|+|.+.+-|++-++ +..+++.+++..+.|.-+.......... +-....+.+ +|.++|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~--qv~~~vs~r--tVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKF--QVFSGVSKR--TVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEE--EEEEcccCC--EEEEeCCCCCCChhhheeeE
Confidence 7899999999999987 4445566777777766443221110000 000111222 38899999999999988753
No 210
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.52 E-value=0.28 Score=44.29 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=60.4
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccC--CeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCc-EEE
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYG--NIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGK-RLE 313 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~ 313 (437)
...-++||+||-. .+|++||.+.....| .+..++++.+. +|||+|-..+....++-++.|-...+.|. +..
T Consensus 78 Grk~~~YvGNL~W-~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLW-YTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeE-EeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3345899999999 699999999888877 46677777754 89999999999999999999988888776 444
Q ss_pred EEEcc
Q 013749 314 VNFSK 318 (437)
Q Consensus 314 v~~~~ 318 (437)
+.+.+
T Consensus 157 ~~~NK 161 (498)
T KOG4849|consen 157 LSYNK 161 (498)
T ss_pred eccch
Confidence 44433
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.47 E-value=0.97 Score=31.74 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=37.1
Q ss_pred CCCCHHHHHHhhhccCCe-----eEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 364 QDVTEEEIVSHLEEHGSI-----VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 364 ~~~t~~~l~~~f~~~G~v-----~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
..++..+|..++...+.| -.+.+. ..|+||+-... .|..+++.|++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 368899999999887655 445663 56888887665 889999999999999999999865
No 212
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.37 E-value=2.9 Score=37.32 Aligned_cols=154 Identities=14% Similarity=0.245 Sum_probs=95.6
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC-------------CeEEEEecChhHHHHH----HHhhccCCC
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-------------NQALLQMQDVPSAINA----LQFYTNVQP 66 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~-------------~~afV~F~~~~~A~~a----~~~~~~~~~ 66 (437)
.+|.|...|+..+++-..+...|.+||+|+.|.++.+. ....+.|-+.+.+-.. ++.+...+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999765 6678999998887544 344444444
Q ss_pred cccCeEEEEEeccccccccc--cc--CCC-----------CCCCCCCcEEEEEEeCcCCCCCHHH-HHHhc---CCCC--
Q 013749 67 TIRGRNVYVQFSSHQELTTM--EQ--NAQ-----------GRGDEPNRILLVTIHHMLYPITVEV-LHQVF---SPHG-- 125 (437)
Q Consensus 67 ~~~g~~l~v~~s~~~~~~~~--~~--~~~-----------~~~~~~~~~~~v~v~nl~~~~~~~~-l~~~f---~~~G-- 125 (437)
.++...|.+.|..-...... .. .+- -.....++.+.|-.. .++.+++ +.+.+ ..=+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~---~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK---DPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec---CccchhHHHHHhhhhhccCCCc
Confidence 67788888877553111100 00 000 001133444333322 3343333 33322 1112
Q ss_pred --ceeEEEEE-------eeCCccEEEEEecChhHHHHHHHHcCCC
Q 013749 126 --FVEKIVTF-------QKSAGFQALIQYQLRPSAVVARSSLQGR 161 (437)
Q Consensus 126 --~i~~i~~~-------~~~~g~~afV~f~~~~~A~~A~~~l~~~ 161 (437)
.+++|.+. .-+..| |.+.|-+...|...+..++..
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~Y-aILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNY-AILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred eEEEEEEEEeccCcccccCCcce-EEEeehhHHhHHHHHHHHHhc
Confidence 23455554 112345 999999999999999887643
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.10 E-value=0.25 Score=40.48 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=60.2
Q ss_pred ceEEecCCCCCCC-----HHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCc-EEEEEecc
Q 013749 355 KMIHLSTLPQDVT-----EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 428 (437)
Q Consensus 355 ~~l~v~nlp~~~t-----~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~s~ 428 (437)
.++.+.+++..+- ......+|.+|-+..-..++ ++.+...|-|.+++.|..|...+++..|.|+ .++..|++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l--rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL--RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH--HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 3466666766432 23445566666665555554 3567788999999999999999999999988 99999999
Q ss_pred CccccccCC
Q 013749 429 LQSIRENSQ 437 (437)
Q Consensus 429 ~~~~~~~~~ 437 (437)
+.....+||
T Consensus 89 ~~~~~~~~q 97 (193)
T KOG4019|consen 89 PGHPESNSQ 97 (193)
T ss_pred CCCcccccc
Confidence 988777655
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.76 E-value=0.16 Score=50.04 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=63.2
Q ss_pred cCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..+|.-++||+|+-..+..+-++.+...+|.|.+++... |||.+|.....+.+|+..++-..++|..+.+.-
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345678899999999999999999999999998887752 999999999999999999999999888776543
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=1.2 Score=43.42 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCcceEEecCCCC-CCCHHHHHHhhhcc----CCeeEEEEEeeC------------C-----------------------
Q 013749 352 SPTKMIHLSTLPQ-DVTEEEIVSHLEEH----GSIVNTKLFEMN------------G----------------------- 391 (437)
Q Consensus 352 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~----G~v~~~~i~~~~------------~----------------------- 391 (437)
.+++.|-|.|+.+ .+.-.||..+|+.| |.|.+|.|++.. |
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3568899999998 68899999999887 699999997431 0
Q ss_pred ---------------c-eEEEEEecCHHHHHHHHHHhCCCccC--CcEEEEEec
Q 013749 392 ---------------K-KQALVLFETEEQATEALVCKHASSLG--GSIIRISFS 427 (437)
Q Consensus 392 ---------------~-~~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~s 427 (437)
+ -||.|+|.+.+.|.+..+.+.|..+. |..|-+-|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 18999999999999999999999997 555555553
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.21 E-value=0.15 Score=48.02 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=55.8
Q ss_pred eEEEEcCCCccC-cHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 6 KVIHVRNVGHEI-SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 6 ~~l~V~~Lp~~~-te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
+.|-+.-.|... +-++|...|.+||.|.+|.|--.---|.|+|.+.-+|-+|-. .+ ...++++.|++.|.++.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~--~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SH--GAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cc--cceecCceeEEEEecCC
Confidence 344444455554 458899999999999999987555569999999999977754 23 34899999999997764
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.60 E-value=0.91 Score=32.91 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=46.0
Q ss_pred EEEEeCCHHHHHHHHHHhcC--ceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCC
Q 013749 285 ALVQMGDGFQAELAVHFLKG--ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 362 (437)
Q Consensus 285 ~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 362 (437)
|+|.|.+..-|+..++ +.. ..+++..+.|.-+..... ...++.. .....+++|.|+||
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~------------~~~k~qv-------~~~vs~rtVlvsgi 60 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLG------------HLQKFQV-------FSGVSKRTVLVSGI 60 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecC------------CceEEEE-------EEcccCCEEEEeCC
Confidence 6899999999999877 333 334666666654332211 0111110 12234588999999
Q ss_pred CCCCCHHHHHHhhh
Q 013749 363 PQDVTEEEIVSHLE 376 (437)
Q Consensus 363 p~~~t~~~l~~~f~ 376 (437)
|..+.+++|++..+
T Consensus 61 p~~l~ee~l~D~Le 74 (88)
T PF07292_consen 61 PDVLDEEELRDKLE 74 (88)
T ss_pred CCCCChhhheeeEE
Confidence 99999999998754
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=1.9 Score=42.09 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=62.6
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhcc----CCeEEEEEecCC-------------C---------------------
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLY----GNIIRIKLLRNK-------------P--------------------- 282 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i~~~~-------------~--------------------- 282 (437)
...+..|-|.|+..+.+..++|.-+|+.| |.|.+|.|.+.. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34556899999999999999999999876 479999887632 1
Q ss_pred ------------------CeEEEEeCCHHHHHHHHHHhcCceeCCc--EEEEEEc
Q 013749 283 ------------------DHALVQMGDGFQAELAVHFLKGALLFGK--RLEVNFS 317 (437)
Q Consensus 283 ------------------g~~fV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~~ 317 (437)
=||.|+|.+...|......+.|..|... .|-+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0799999999999999999999999655 4555553
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.45 E-value=5.7 Score=27.10 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 013749 256 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314 (437)
Q Consensus 256 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 314 (437)
.++-++++..+..|+-.. +..++.| -||-|.+..+|.++....+|..+.+-.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999997542 4444334 599999999999999999999988777654
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=72.00 E-value=3.4 Score=33.66 Aligned_cols=108 Identities=16% Similarity=0.024 Sum_probs=67.4
Q ss_pred cCcHHHHHHhccC-CccceEEEEEc-cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCC
Q 013749 16 EISENDLLQLFQP-FGVITKLVMLR-AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93 (437)
Q Consensus 16 ~~te~~l~~~f~~-~G~i~~v~i~~-~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~ 93 (437)
..+-..|...+.+ .+.-..+.+.. +.++..+.|.+.+++.++++ ..+..++|..+.+..-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccc-------
Confidence 3555555555543 23222333332 45889999999999999987 444467777766664332111000
Q ss_pred CCCCCcEEEEEEeCcCC-CCCHHHHHHhcCCCCceeEEEEE
Q 013749 94 GDEPNRILLVTIHHMLY-PITVEVLHQVFSPHGFVEKIVTF 133 (437)
Q Consensus 94 ~~~~~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~i~~~ 133 (437)
.........|.|.|||. -++++-+..+-+.+|.+..+...
T Consensus 98 ~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 98 VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 01112334477899995 46889999999999999888654
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=71.99 E-value=4.4 Score=32.94 Aligned_cols=110 Identities=11% Similarity=-0.064 Sum_probs=68.6
Q ss_pred CCHHHHHHHHhcc-CCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccccCC
Q 013749 257 IDEDKLFNLFSLY-GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSN 335 (437)
Q Consensus 257 ~t~~~l~~~F~~~-G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+-..|.+.+.+. +....+.+..=..++..++|.+.+++..++. .....+.|..+.+..=.+......
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~---------- 97 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE---------- 97 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc----------
Confidence 4566565555442 2222333333236799999999999999877 344556666666654332210000
Q ss_pred CCCCCcchhccccccCCCcceEEecCCCCC-CCHHHHHHhhhccCCeeEEEEEee
Q 013749 336 LNRFNRNAAKNYRYCCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEM 389 (437)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~ 389 (437)
.. ...-...|.|.|||.. .+++-|+.+.+.+|.+..+.....
T Consensus 98 ------~~------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 ------VK------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ------cc------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 00 0011256889999996 688999999999999999888643
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=71.06 E-value=4.2 Score=33.56 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=55.7
Q ss_pred EEEEcCCCccCcH-----HHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCe-EEEEEeccc
Q 013749 7 VIHVRNVGHEISE-----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR-NVYVQFSSH 80 (437)
Q Consensus 7 ~l~V~~Lp~~~te-----~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~-~l~v~~s~~ 80 (437)
++.+.+|+..+-. .+..++|.+|.+..-..+++..+.--|.|.+++.|..|...+++. .+.|+ .+..-++.+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~--~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHST--SFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhc--ccCCCceEEEEEccC
Confidence 4566777654322 335567788877777778888888999999999999999999988 78887 677766655
Q ss_pred cc
Q 013749 81 QE 82 (437)
Q Consensus 81 ~~ 82 (437)
..
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 43
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.69 E-value=1.4 Score=38.65 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=54.6
Q ss_pred ceEEecCCCCCC------------CHHHHHHhhhccCCeeEEEEEee-------CC-------ceE---------EEEEe
Q 013749 355 KMIHLSTLPQDV------------TEEEIVSHLEEHGSIVNTKLFEM-------NG-------KKQ---------ALVLF 399 (437)
Q Consensus 355 ~~l~v~nlp~~~------------t~~~l~~~f~~~G~v~~~~i~~~-------~~-------~~~---------afV~f 399 (437)
.|||+-+||-.| +++-|+..|+.||.|..|.|+-- ++ +|| |+|+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 578888888543 57899999999999999988621 11 222 56777
Q ss_pred cCHHHHHHHHHHhCCCccC----Cc----EEEEEeccCcc
Q 013749 400 ETEEQATEALVCKHASSLG----GS----IIRISFSQLQS 431 (437)
Q Consensus 400 ~~~~~A~~A~~~l~~~~~~----g~----~l~v~~s~~~~ 431 (437)
.....-..|+.+|.|.++- |+ .++|.|-++..
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 7777777888888887653 22 56777766554
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.95 E-value=11 Score=35.10 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=46.3
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCcc-ceEEEEEccCCeEEEEecChhHHHHHHHh
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGV-ITKLVMLRAKNQALLQMQDVPSAINALQF 60 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~-i~~v~i~~~~~~afV~F~~~~~A~~a~~~ 60 (437)
.+|-|.+.|.....+||...|+.||. --+|.++-|. .||-.|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-eeEEeecchHHHHHHhhc
Confidence 57889999999999999999999865 4577777665 699999999999999874
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=16 Score=34.22 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=46.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCe-eEEEEEeeCCceEEEEEecCHHHHHHHHHH
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSI-VNTKLFEMNGKKQALVLFETEEQATEALVC 411 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~~~~~~~afV~f~~~~~A~~A~~~ 411 (437)
-++|-|.++|.....+||...|+.|+.- ..|+++. ..-||--|.+..-|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD---dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD---DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee---cceeEEeecchHHHHHHhhc
Confidence 3789999999999999999999999765 6788874 45678889999999999844
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.41 E-value=11 Score=29.17 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=27.5
Q ss_pred ceEEecCCCCC---------CCHHHHHHhhhccCCeeEEEEEeeCC-ceEEEEEecCHHHHH
Q 013749 355 KMIHLSTLPQD---------VTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQAT 406 (437)
Q Consensus 355 ~~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~afV~f~~~~~A~ 406 (437)
.++.|.|+|.+ ++-++|++.|+.|..+...-+....+ .++++|+|..--..-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHH
Confidence 45667787553 35689999999998886444433333 789999998865543
No 227
>PF14893 PNMA: PNMA
Probab=58.25 E-value=6.8 Score=36.41 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=30.7
Q ss_pred CceEEEEcCCCccCcHHHHHHhcc----CCccceEEEEEcc-------CCeEEEEecC
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQ----PFGVITKLVMLRA-------KNQALLQMQD 50 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~----~~G~i~~v~i~~~-------~~~afV~F~~ 50 (437)
+.|.|.|.|||.+|++++|.+.++ +.|. ++|+.. ..-|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~---yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGR---YRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhccccc---ceehhhHhhhhcccceeeeeccc
Confidence 568899999999999999888764 5554 334322 2446676643
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.37 E-value=11 Score=29.03 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=28.2
Q ss_pred eEEEEcCCCccC---------cHHHHHHhccCCccceEEEEEcc----CCeEEEEecCh-hHHHHHHH
Q 013749 6 KVIHVRNVGHEI---------SENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDV-PSAINALQ 59 (437)
Q Consensus 6 ~~l~V~~Lp~~~---------te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~-~~A~~a~~ 59 (437)
.++.|-|+|.+. +.++|++.|+.|.++ +++.+-+ .|++.|+|.+. ..=..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 356788887654 557899999999887 4555544 38999999875 33334443
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.59 E-value=18 Score=32.20 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=37.2
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHH
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~ 293 (437)
+.|+++|||.| +...||+..+.+.|.+---.-...+.+-||+.|.+..
T Consensus 331 ~di~~~nl~rd-~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRD-IRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccc-cchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 46999999985 9999999999998865332234445889999997654
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.44 E-value=16 Score=32.54 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=38.7
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccc-eEEEEEccCCeEEEEecChhHH
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVI-TKLVMLRAKNQALLQMQDVPSA 54 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i-~~v~i~~~~~~afV~F~~~~~A 54 (437)
.-|+++|||.++...||...+.+.|.+ ..+.+.-..|-||+.|.+...|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCC
Confidence 458999999999999999999887764 4555555568899999875443
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.19 E-value=45 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.5
Q ss_pred HHHHHHhhhccCCeeEEEE
Q 013749 368 EEEIVSHLEEHGSIVNTKL 386 (437)
Q Consensus 368 ~~~l~~~f~~~G~v~~~~i 386 (437)
.++|+++|++.|.|.-+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999965555
No 232
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.61 E-value=2.2 Score=40.12 Aligned_cols=76 Identities=9% Similarity=-0.063 Sum_probs=59.6
Q ss_pred EEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 357 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 357 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
.++..+|...+++++..+|+.||.|.-+...+.-+ +-.+||.-... +|..++..+....+.|..+++.+|+....
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s~~ 84 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSSSE 84 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchhhh
Confidence 45667888999999999999999998877754422 34778776654 78889988888888999999988876554
Q ss_pred c
Q 013749 433 R 433 (437)
Q Consensus 433 ~ 433 (437)
+
T Consensus 85 ~ 85 (572)
T KOG4365|consen 85 K 85 (572)
T ss_pred h
Confidence 3
No 233
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.73 E-value=30 Score=32.28 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=37.7
Q ss_pred EEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCC
Q 013749 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123 (437)
Q Consensus 44 afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~ 123 (437)
|||+|.+..+|+.|.+.+... +++.+.+..+... +. |+-.||.....+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~----~~~~~~v~~APeP----------------~D---I~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK----RPNSWRVSPAPEP----------------DD---IIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC----CCCCceEeeCCCc----------------cc---ccccccCCChHHHHHHHHHHH
Confidence 799999999999999965543 2344455543321 11 677888766667777766543
No 234
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=44.18 E-value=8.5 Score=26.32 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=15.8
Q ss_pred CceEEEEcCCCccCcHHHH
Q 013749 4 PSKVIHVRNVGHEISENDL 22 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l 22 (437)
-||+||||+||..|-++.=
T Consensus 26 tSr~vflG~IP~~W~~~~~ 44 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHR 44 (67)
T ss_pred cCceEEECCCChHHHHcCc
Confidence 4799999999998877653
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.83 E-value=14 Score=32.54 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=28.3
Q ss_pred CceEEEEcCCCccC------------cHHHHHHhccCCccceEEEEE
Q 013749 4 PSKVIHVRNVGHEI------------SENDLLQLFQPFGVITKLVML 38 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~------------te~~l~~~f~~~G~i~~v~i~ 38 (437)
...||++.+||-.| +|+-|+..|..||.|.+|.|.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34688999999653 567899999999999877764
No 236
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.63 E-value=1.1e+02 Score=22.07 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHhhhcc-C-CeeEEEEEee-CCceEEEEEecCHHHHHHHHHHh
Q 013749 361 TLPQDVTEEEIVSHLEEH-G-SIVNTKLFEM-NGKKQALVLFETEEQATEALVCK 412 (437)
Q Consensus 361 nlp~~~t~~~l~~~f~~~-G-~v~~~~i~~~-~~~~~afV~f~~~~~A~~A~~~l 412 (437)
.++...+..+|++.++.. | +|.+|..+.. .+..-|+|.+..-++|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 467889999999998884 4 5566666543 34568999999999988875443
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=42.22 E-value=1e+02 Score=29.17 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=57.3
Q ss_pred CCcceEEecCCCC-CCCHHHHHHhhhcc----CCeeEEEEEeeC------------------------------------
Q 013749 352 SPTKMIHLSTLPQ-DVTEEEIVSHLEEH----GSIVNTKLFEMN------------------------------------ 390 (437)
Q Consensus 352 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~----G~v~~~~i~~~~------------------------------------ 390 (437)
.++..|-|-|+++ .+...+|...|+.| |++..|.|++..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 4567899999988 67889999999876 677778886320
Q ss_pred ----------------C----------------c-eEEEEEecCHHHHHHHHHHhCCCccC--CcEEEEEe
Q 013749 391 ----------------G----------------K-KQALVLFETEEQATEALVCKHASSLG--GSIIRISF 426 (437)
Q Consensus 391 ----------------~----------------~-~~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~ 426 (437)
+ + -||.|++.+.+.+......+.|..+. +..+-+-|
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 0 1 27999999999999999999998876 44454444
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.37 E-value=73 Score=22.96 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=37.3
Q ss_pred CCCccCcHHHHHHhccC-Ccc-ceEEEEEcc---CCeEEEEecChhHHHHHHHh
Q 013749 12 NVGHEISENDLLQLFQP-FGV-ITKLVMLRA---KNQALLQMQDVPSAINALQF 60 (437)
Q Consensus 12 ~Lp~~~te~~l~~~f~~-~G~-i~~v~i~~~---~~~afV~F~~~~~A~~a~~~ 60 (437)
-.++.++..++++.++. ||. |.+|..+.- ..-|||.+...++|......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 35678899999998886 665 667766643 25599999999999887653
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.38 E-value=33 Score=29.81 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 386 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i 386 (437)
+...+||+-|+|..+|++-|.++.+++|.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34578999999999999999999999998866555
No 240
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.26 E-value=59 Score=22.50 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=22.9
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCccCCc
Q 013749 393 KQALVLFETEEQATEALVCKHASSLGGS 420 (437)
Q Consensus 393 ~~afV~f~~~~~A~~A~~~l~~~~~~g~ 420 (437)
.+.+|.|.+..+|.+|-+.|+...+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4679999999999999998877665544
No 241
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=32.68 E-value=99 Score=20.93 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHhccC--CccceEEEEEccCCeEE-EEecCh
Q 013749 20 NDLLQLFQP--FGVITKLVMLRAKNQAL-LQMQDV 51 (437)
Q Consensus 20 ~~l~~~f~~--~G~i~~v~i~~~~~~af-V~F~~~ 51 (437)
++|.+.... .|.|.+.++.-++|.++ |+|.+.
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEecCCcEEEEEEecCC
Confidence 355566665 89999999999888765 777653
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.44 E-value=51 Score=30.95 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=43.0
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceE-EEEEcc--------CCeEEEEecChhHHHHHHHhhccC
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITK-LVMLRA--------KNQALLQMQDVPSAINALQFYTNV 64 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~-v~i~~~--------~~~afV~F~~~~~A~~a~~~~~~~ 64 (437)
...|.|+.||+..++++|.+...+|-.=+. ....+. .+.|||.|.+.++.......++++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 356789999999999999998887644222 222211 267999999999977777755554
No 243
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.24 E-value=29 Score=30.13 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=27.9
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccc
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVI 32 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i 32 (437)
|...++++|+-|+|..++|+.|..+.+..|-+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhh
Confidence 34567899999999999999999999998844
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=29.28 E-value=13 Score=36.44 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=51.2
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeC
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLF 308 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~ 308 (437)
.|++++.|+++ +++-.+|..+++.+-.+.++-+.... ...+.|.|.-...-..|+.+||+..+.
T Consensus 231 e~sll~rni~P-nis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILP-NISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCC-cccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 46899999999 89999999999999888777554422 447889998777777788888886553
No 245
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.48 E-value=69 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 285 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 285 ~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
|||.|.+..+|..|.+.+.... ++.+++..+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999665544 344566655544
No 246
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.42 E-value=2.3e+02 Score=19.75 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=31.6
Q ss_pred HHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhC
Q 013749 369 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413 (437)
Q Consensus 369 ~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~ 413 (437)
.++.+.+.++| +...++.-..+-++.|+-+.+.++|.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 67788888999 556666421114488888889999998887764
No 247
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=26.34 E-value=21 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhC
Q 013749 369 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413 (437)
Q Consensus 369 ~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~ 413 (437)
++|++.|..++....+.-+ .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 6888888776555332222 37999999999988887654
No 248
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.51 E-value=1.7e+02 Score=21.46 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCCccCcHHHHHHhccCCcc-ceEEEEEcc--CCeEEEEecChhHHHHHHHhhc
Q 013749 12 NVGHEISENDLLQLFQPFGV-ITKLVMLRA--KNQALLQMQDVPSAINALQFYT 62 (437)
Q Consensus 12 ~Lp~~~te~~l~~~f~~~G~-i~~v~i~~~--~~~afV~F~~~~~A~~a~~~~~ 62 (437)
.+-+..+...+..-|..-|. -+...+.+| +.+|.|.|.+.+.+..|.+.|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 34456777777766665554 334556667 5899999999999999987654
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=24.99 E-value=80 Score=26.27 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=35.8
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-----ceEEEEEecCHHHHHHHHHH
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-----KKQALVLFETEEQATEALVC 411 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-----~~~afV~f~~~~~A~~A~~~ 411 (437)
+++|.. |.....++|.++-+ |++..+..-.... +|-.||.|.+.++|.+.++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 556665 33333455655556 7888887753322 67899999999999987643
No 250
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.39 E-value=1.3e+02 Score=21.49 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=24.8
Q ss_pred CeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCce
Q 013749 271 NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 306 (437)
Q Consensus 271 ~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~ 306 (437)
.|.++-...+-+||.|||=.+..+...|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 466665555559999999999999999988666543
No 251
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.34 E-value=2.2e+02 Score=18.87 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=28.8
Q ss_pred CHHHHHHhhhccC-CeeEEEEEeeCCceEEEEEecCHHHHHHHHH
Q 013749 367 TEEEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALV 410 (437)
Q Consensus 367 t~~~l~~~f~~~G-~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~ 410 (437)
.-.++-++|.+.| .|.++......+++...+.+.+.+.|.++++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 4578888888876 5677776654445555556666666666653
No 252
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=24.05 E-value=1.3e+02 Score=23.97 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=29.1
Q ss_pred ceEEEEcCCC----ccCcHHHHHHhccCCccceEEEEEccCCeEEEE
Q 013749 5 SKVIHVRNVG----HEISENDLLQLFQPFGVITKLVMLRAKNQALLQ 47 (437)
Q Consensus 5 s~~l~V~~Lp----~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~ 47 (437)
....++||+. ..+..+||++.|...| ..+|+-.-..|-..++
T Consensus 3 ~yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~SGNvvf~ 48 (137)
T PF08002_consen 3 TYIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQSGNVVFE 48 (137)
T ss_dssp EEEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETTTTEEEEE
T ss_pred eEEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEeeCCEEEe
Confidence 3567889984 3488999999999888 4788877776666666
No 253
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.40 E-value=2.2e+02 Score=18.49 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=42.4
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecCh----hHHHHHHH
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV----PSAINALQ 59 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~----~~A~~a~~ 59 (437)
|+.|.|+--.--...+.+.++..-.|.++.+-...+.+-|.|... ++..++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 577888888888889999999887788999998889999999765 44455554
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.54 E-value=19 Score=35.33 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=50.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLG 418 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~ 418 (437)
...++|+++|++++++-++|..+|+.+-.+..+-+-.. +....+.|.|..--.-.-|+.+||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34588999999999999999999998877766555322 12457888898777777777777776554
No 255
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.33 E-value=1.2e+02 Score=21.64 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=25.1
Q ss_pred ceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCC
Q 013749 126 FVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160 (437)
Q Consensus 126 ~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~ 160 (437)
.|.++...+.-+|| -||+=.+..+...|++.+.+
T Consensus 33 ~I~Si~~~~~lkGy-IyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGY-IYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSE-EEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceE-EEEEeCCHHHHHHHHhcccc
Confidence 46677777778998 99999999999999977655
No 256
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=22.28 E-value=2.2e+02 Score=18.02 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=30.5
Q ss_pred HHHHHHhhhccC-CeeEEEEEeeC-CceEEEEEecCHHHHHHHH
Q 013749 368 EEEIVSHLEEHG-SIVNTKLFEMN-GKKQALVLFETEEQATEAL 409 (437)
Q Consensus 368 ~~~l~~~f~~~G-~v~~~~i~~~~-~~~~afV~f~~~~~A~~A~ 409 (437)
-.++-+.+.+.| .|.++...... +.....+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 456667777765 66677666544 5678888999988888875
No 257
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.20 E-value=3.9e+02 Score=20.99 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=51.9
Q ss_pred cCCCcceEEecCCCCC---CCHHHHHHhhhccCCe-eEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 350 CCSPTKMIHLSTLPQD---VTEEEIVSHLEEHGSI-VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~---~t~~~l~~~f~~~G~v-~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
..++...|+|+..... .+...+.+...+-|-- .++.. ..+...|.|.+.++-.+|.+.|....=++-.+-+.
T Consensus 31 lygedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~----~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 31 LRQQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP----ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred ccCCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe----eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3445677888877444 4567888888887744 34333 24468999999999999998887765445566666
Q ss_pred ecc
Q 013749 426 FSQ 428 (437)
Q Consensus 426 ~s~ 428 (437)
++.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 554
No 258
>PRK10113 cell division modulator; Provisional
Probab=21.98 E-value=1.1e+02 Score=20.71 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=23.2
Q ss_pred eEEEEEccCCeEEEE----------ecChhHHHHHHHhhc
Q 013749 33 TKLVMLRAKNQALLQ----------MQDVPSAINALQFYT 62 (437)
Q Consensus 33 ~~v~i~~~~~~afV~----------F~~~~~A~~a~~~~~ 62 (437)
.+|.++++|--|||. |..+|+|++..+.+.
T Consensus 34 rDVW~LrGKYVAFvl~ge~FrRSPaFs~PEsAQRWAnQir 73 (80)
T PRK10113 34 RDVWMLRGKYVAFVLMGESFLRSPAFSVPESAQRWANQIR 73 (80)
T ss_pred hhhheeccceEEEEEechhhccCCccCCcHHHHHHHHHhh
Confidence 478888888788874 678899999877443
No 259
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=20.88 E-value=1.3e+02 Score=20.79 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=28.3
Q ss_pred cCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 27 QPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 27 ~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
..-|.|.+++|...-+.. .-.+.|.+|++...-.+...+|+++.+.+
T Consensus 25 ~~~G~v~~~~v~~s~~~~----~l~~~a~~~v~~~~~~p~~~~g~~~~~~~ 71 (79)
T PF03544_consen 25 DPDGRVSDVRVIQSSGPP----ILDEAALRAVKKWRFKPAPKNGKPVKVTY 71 (79)
T ss_dssp ETTTEEEEEEEEEESSSS----CSHHHHHHHHCC-EE-TT--CCEECEEEE
T ss_pred eCCCCEEEEEEEEccCHH----HHHHHHHHHHHhCCCCCCCcCCEEEEEEE
Confidence 355778888887765522 24577888888755555566777665554
No 260
>PF14893 PNMA: PNMA
Probab=20.45 E-value=99 Score=28.93 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=31.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhc----cCCeeEE-EEE-eeCCceEEEEEecCH
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEE----HGSIVNT-KLF-EMNGKKQALVLFETE 402 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~----~G~v~~~-~i~-~~~~~~~afV~f~~~ 402 (437)
.+.|.|.+||.+|++++|++.... .|...-. +++ ++.+..-|+|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 367999999999999999887754 4544222 222 112244677777654
Done!