Query 013749
Match_columns 437
No_of_seqs 202 out of 2725
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.2E-41 3.9E-46 312.2 28.9 235 102-433 24-267 (284)
2 3smz_A Protein raver-1, ribonu 100.0 2.2E-41 7.6E-46 310.3 28.0 236 3-321 20-265 (284)
3 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-41 7.4E-46 311.7 25.3 239 99-431 40-292 (292)
4 2ghp_A U4/U6 snRNA-associated 100.0 5.1E-41 1.7E-45 309.2 23.8 238 2-320 38-291 (292)
5 3tyt_A Heterogeneous nuclear r 100.0 8.1E-35 2.8E-39 251.4 21.1 184 243-427 3-204 (205)
6 2adc_A Polypyrimidine tract-bi 100.0 3.7E-33 1.2E-37 246.8 23.1 189 241-430 31-228 (229)
7 4f02_A Polyadenylate-binding p 100.0 2.8E-33 9.7E-38 244.6 19.7 164 242-432 13-183 (213)
8 1qm9_A Polypyrimidine tract-bi 100.0 4.8E-33 1.6E-37 240.9 18.3 186 244-430 3-197 (198)
9 3md3_A Nuclear and cytoplasmic 100.0 1.3E-31 4.5E-36 225.1 20.7 158 245-429 1-166 (166)
10 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-31 6.6E-36 224.6 21.2 156 243-427 2-168 (168)
11 1fxl_A Paraneoplastic encephal 100.0 4.2E-31 1.5E-35 222.2 20.3 155 244-427 2-167 (167)
12 2qfj_A FBP-interacting repress 100.0 7.4E-31 2.5E-35 230.5 19.3 173 244-434 28-209 (216)
13 1l3k_A Heterogeneous nuclear r 100.0 1.4E-30 4.9E-35 225.0 19.7 170 241-435 10-188 (196)
14 1fxl_A Paraneoplastic encephal 100.0 1.8E-30 6.3E-35 218.3 18.5 156 4-175 1-167 (167)
15 2yh0_A Splicing factor U2AF 65 100.0 5E-30 1.7E-34 222.0 21.5 178 244-432 4-196 (198)
16 2g4b_A Splicing factor U2AF 65 100.0 2.8E-30 9.5E-35 218.3 19.4 155 243-428 3-172 (172)
17 3pgw_A U1-A; protein-RNA compl 100.0 5.9E-30 2E-34 234.1 21.9 187 241-429 6-282 (282)
18 4f02_A Polyadenylate-binding p 100.0 1.2E-30 4.1E-35 227.9 16.0 160 3-178 13-181 (213)
19 1b7f_A Protein (SXL-lethal pro 100.0 2.9E-30 9.8E-35 217.4 17.6 156 4-175 2-168 (168)
20 3nmr_A Cugbp ELAV-like family 100.0 1.5E-29 5.2E-34 214.4 20.3 158 243-428 2-175 (175)
21 2cjk_A Nuclear polyadenylated 100.0 9.2E-31 3.1E-35 220.2 12.5 157 243-431 2-167 (167)
22 1fje_B Nucleolin RBD12, protei 100.0 3.5E-30 1.2E-34 218.3 14.3 163 240-431 9-175 (175)
23 3tyt_A Heterogeneous nuclear r 100.0 1.9E-29 6.6E-34 217.7 16.1 167 3-174 2-203 (205)
24 3sde_A Paraspeckle component 1 100.0 8.6E-29 2.9E-33 223.1 20.9 156 240-431 18-180 (261)
25 3md3_A Nuclear and cytoplasmic 100.0 3.3E-29 1.1E-33 210.4 15.8 155 6-176 1-165 (166)
26 2adc_A Polypyrimidine tract-bi 100.0 7.9E-29 2.7E-33 218.9 17.8 172 2-177 31-227 (229)
27 3nmr_A Cugbp ELAV-like family 100.0 9.8E-29 3.4E-33 209.4 17.6 159 4-175 2-174 (175)
28 2g4b_A Splicing factor U2AF 65 100.0 9.8E-29 3.4E-33 208.8 16.5 154 3-175 2-171 (172)
29 2cjk_A Nuclear polyadenylated 100.0 7.6E-29 2.6E-33 208.4 12.7 154 3-177 1-165 (167)
30 2qfj_A FBP-interacting repress 100.0 7E-29 2.4E-33 217.9 12.9 166 4-176 27-203 (216)
31 1qm9_A Polypyrimidine tract-bi 100.0 2.4E-28 8E-33 211.3 15.7 170 4-177 2-196 (198)
32 1l3k_A Heterogeneous nuclear r 100.0 4.5E-28 1.6E-32 209.3 16.1 161 3-177 11-182 (196)
33 2yh0_A Splicing factor U2AF 65 100.0 7.1E-28 2.4E-32 208.4 16.7 169 3-177 2-193 (198)
34 3pgw_A U1-A; protein-RNA compl 100.0 8.4E-27 2.9E-31 213.1 24.1 214 101-318 10-281 (282)
35 1fje_B Nucleolin RBD12, protei 99.9 1.7E-27 5.7E-32 201.8 14.7 159 2-177 10-173 (175)
36 3sde_A Paraspeckle component 1 99.9 4.1E-27 1.4E-31 212.1 16.5 153 3-177 20-178 (261)
37 3zzy_A Polypyrimidine tract-bi 99.9 2E-22 6.7E-27 157.3 12.1 107 95-201 23-129 (130)
38 2i2y_A Fusion protein consists 99.9 2.8E-22 9.4E-27 164.6 11.6 135 282-430 13-148 (150)
39 3r27_A HnRNP L, heterogeneous 99.9 3.3E-22 1.1E-26 148.6 9.8 82 2-83 18-99 (100)
40 2kn4_A Immunoglobulin G-bindin 99.9 9.1E-22 3.1E-26 163.2 12.0 137 282-433 13-153 (158)
41 2e5i_A Heterogeneous nuclear r 99.9 1.1E-20 3.7E-25 147.1 14.5 104 94-198 19-122 (124)
42 4f25_A Polyadenylate-binding p 99.8 2.1E-21 7.1E-26 151.3 9.1 107 3-116 3-113 (115)
43 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-21 5.1E-26 146.6 7.7 87 2-88 13-99 (105)
44 2cq1_A PTB-like protein L; RRM 99.8 6.4E-21 2.2E-25 143.6 10.9 86 2-87 12-97 (101)
45 3r27_A HnRNP L, heterogeneous 99.8 6.8E-21 2.3E-25 141.5 10.6 81 350-432 17-99 (100)
46 2ad9_A Polypyrimidine tract-bi 99.8 4E-21 1.4E-25 148.2 9.4 88 2-89 28-115 (119)
47 1x4d_A Matrin 3; structural ge 99.8 4.7E-21 1.6E-25 144.1 9.4 80 2-81 12-92 (102)
48 1wex_A Hypothetical protein (r 99.8 1.4E-20 4.7E-25 142.8 10.9 85 2-86 12-96 (104)
49 4f25_A Polyadenylate-binding p 99.8 1.1E-20 3.7E-25 147.3 10.2 104 245-369 6-112 (115)
50 4fxv_A ELAV-like protein 1; RN 99.8 2.3E-20 7.8E-25 140.9 11.1 80 351-430 16-99 (99)
51 2cq1_A PTB-like protein L; RRM 99.8 4.6E-20 1.6E-24 138.9 10.9 85 349-435 10-96 (101)
52 1sjq_A Polypyrimidine tract-bi 99.8 2.6E-20 8.7E-25 139.9 9.2 83 352-436 14-98 (105)
53 2ad9_A Polypyrimidine tract-bi 99.8 5.5E-20 1.9E-24 141.8 9.7 86 350-437 27-114 (119)
54 1x4f_A Matrin 3; structural ge 99.8 4.7E-20 1.6E-24 140.5 9.0 81 2-82 22-103 (112)
55 2i2y_A Fusion protein consists 99.8 1.8E-19 6.1E-24 147.7 11.6 137 135-320 11-148 (150)
56 1x4d_A Matrin 3; structural ge 99.8 1.1E-19 3.8E-24 136.6 8.9 81 351-433 12-96 (102)
57 1wex_A Hypothetical protein (r 99.8 2.3E-19 7.9E-24 136.0 10.3 83 350-434 11-95 (104)
58 1sjr_A Polypyrimidine tract-bi 99.8 3E-19 1E-23 144.6 11.6 106 95-201 41-147 (164)
59 2wbr_A GW182, gawky, LD47780P; 99.8 2.1E-19 7.3E-24 128.1 9.0 74 353-428 6-79 (89)
60 3s8s_A Histone-lysine N-methyl 99.8 6.7E-19 2.3E-23 135.4 11.1 81 352-432 4-88 (110)
61 2kn4_A Immunoglobulin G-bindin 99.8 3.6E-18 1.2E-22 141.4 15.1 78 243-321 69-151 (158)
62 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.7E-24 135.0 5.1 79 354-432 1-85 (91)
63 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-19 1.3E-23 126.8 6.7 77 2-80 4-80 (89)
64 1x4f_A Matrin 3; structural ge 99.8 8.3E-19 2.8E-23 133.7 8.8 81 350-432 21-104 (112)
65 2lea_A Serine/arginine-rich sp 99.8 1.9E-19 6.6E-24 144.1 5.3 123 284-435 6-132 (135)
66 1whw_A Hypothetical protein ri 99.8 2.5E-18 8.6E-23 130.3 11.0 85 352-436 6-94 (99)
67 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-18 8.3E-23 127.0 10.6 79 352-430 4-86 (87)
68 2hvz_A Splicing factor, argini 99.8 8.6E-19 2.9E-23 133.4 8.3 99 6-109 1-100 (101)
69 2dgx_A KIAA0430 protein; RRM d 99.8 2E-18 7E-23 129.7 10.2 83 352-434 7-94 (96)
70 3md1_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 125.0 11.0 77 355-431 2-82 (83)
71 2lkz_A RNA-binding protein 5; 99.8 5.8E-19 2E-23 131.4 6.7 75 355-429 10-94 (95)
72 3lqv_A PRE-mRNA branch site pr 99.8 5E-19 1.7E-23 138.1 6.7 102 2-126 5-109 (115)
73 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3E-18 1E-22 126.0 10.3 77 352-428 5-85 (85)
74 2cpf_A RNA binding motif prote 99.8 3.1E-18 1E-22 129.5 10.7 84 352-435 3-93 (98)
75 2x1f_A MRNA 3'-END-processing 99.8 2.8E-18 9.6E-23 129.1 10.1 81 353-433 1-85 (96)
76 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.5E-18 1.5E-22 129.9 11.2 83 352-434 13-97 (103)
77 2cpj_A Non-POU domain-containi 99.8 3.4E-18 1.2E-22 129.4 10.4 79 2-82 12-90 (99)
78 2d9p_A Polyadenylate-binding p 99.8 4.7E-18 1.6E-22 129.7 11.1 83 352-434 13-97 (103)
79 4fxv_A ELAV-like protein 1; RN 99.8 3.5E-18 1.2E-22 128.8 10.2 76 243-319 18-98 (99)
80 2cq3_A RNA-binding protein 9; 99.8 7.6E-18 2.6E-22 128.6 11.9 83 352-434 13-97 (103)
81 2lxi_A RNA-binding protein 10; 99.8 4.9E-19 1.7E-23 131.4 5.0 77 5-82 1-84 (91)
82 2dgv_A HnRNP M, heterogeneous 99.8 4.7E-18 1.6E-22 126.9 10.4 83 352-434 6-90 (92)
83 2dnz_A Probable RNA-binding pr 99.8 5.1E-18 1.7E-22 127.5 10.6 82 352-433 3-88 (95)
84 2cqc_A Arginine/serine-rich sp 99.8 6.2E-18 2.1E-22 127.1 11.0 79 351-429 12-94 (95)
85 2do4_A Squamous cell carcinoma 99.8 8.5E-18 2.9E-22 127.6 11.8 81 352-432 15-98 (100)
86 2cq0_A Eukaryotic translation 99.8 6.4E-18 2.2E-22 129.0 11.0 84 351-434 12-99 (103)
87 2dgo_A Cytotoxic granule-assoc 99.8 8.8E-18 3E-22 131.0 12.0 84 352-435 13-100 (115)
88 2jvr_A Nucleolar protein 3; RN 99.8 2.1E-18 7.1E-23 132.1 8.2 79 353-431 27-106 (111)
89 3s8s_A Histone-lysine N-methyl 99.8 4.2E-18 1.4E-22 130.9 9.9 78 2-81 3-86 (110)
90 4a8x_A RNA-binding protein wit 99.7 5.2E-18 1.8E-22 125.6 9.9 78 354-431 4-86 (88)
91 2jrs_A RNA-binding protein 39; 99.7 8.6E-18 2.9E-22 129.0 11.3 81 351-431 23-107 (108)
92 2dnq_A RNA-binding protein 4B; 99.7 8.8E-18 3E-22 124.7 11.0 79 352-434 6-84 (90)
93 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.5E-18 1.9E-22 141.0 11.0 140 287-434 11-156 (165)
94 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-17 4E-22 128.0 11.8 84 352-435 13-102 (105)
95 1x4g_A Nucleolysin TIAR; struc 99.7 5.3E-18 1.8E-22 130.8 9.9 84 351-436 22-105 (109)
96 1why_A Hypothetical protein ri 99.7 6E-18 2.1E-22 127.6 9.9 78 352-431 15-94 (97)
97 2e5h_A Zinc finger CCHC-type a 99.7 6.1E-18 2.1E-22 126.9 9.7 78 351-428 13-94 (94)
98 1why_A Hypothetical protein ri 99.7 3.6E-18 1.2E-22 128.8 8.5 78 2-81 14-93 (97)
99 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-17 4.1E-22 130.2 11.7 84 351-434 22-109 (115)
100 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.5E-18 1.5E-22 125.0 8.7 77 1-79 3-85 (85)
101 2dgs_A DAZ-associated protein 99.7 1.1E-17 3.7E-22 126.7 11.0 83 352-435 8-94 (99)
102 1whx_A Hypothetical protein ri 99.7 5.4E-18 1.9E-22 130.8 9.4 80 354-435 10-89 (111)
103 2cpj_A Non-POU domain-containi 99.7 7.1E-18 2.4E-22 127.7 9.7 81 351-433 12-92 (99)
104 1p27_B RNA-binding protein 8A; 99.7 1.1E-17 3.8E-22 128.4 10.9 80 352-431 21-104 (106)
105 1x5s_A Cold-inducible RNA-bind 99.7 6.5E-18 2.2E-22 128.7 9.5 83 352-434 10-96 (102)
106 2ywk_A Putative RNA-binding pr 99.7 1E-17 3.6E-22 125.8 10.3 78 352-429 14-94 (95)
107 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5E-18 1.7E-22 129.4 8.5 82 1-84 8-95 (102)
108 2ytc_A PRE-mRNA-splicing facto 99.7 5.5E-18 1.9E-22 124.5 8.3 76 2-79 9-85 (85)
109 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.8E-18 2E-22 129.0 8.7 84 352-435 10-97 (102)
110 2err_A Ataxin-2-binding protei 99.7 6.3E-18 2.2E-22 130.2 9.0 80 352-431 27-108 (109)
111 1x5t_A Splicing factor 3B subu 99.7 5.8E-18 2E-22 127.5 8.5 83 352-434 3-90 (96)
112 1x4g_A Nucleolysin TIAR; struc 99.7 7.8E-18 2.7E-22 129.9 9.4 80 2-83 22-101 (109)
113 2lkz_A RNA-binding protein 5; 99.7 5.3E-18 1.8E-22 126.2 8.0 75 6-80 10-94 (95)
114 2e5j_A Methenyltetrahydrofolat 99.7 7.5E-18 2.6E-22 127.0 9.0 79 352-431 17-95 (97)
115 2la6_A RNA-binding protein FUS 99.7 1.5E-17 5.1E-22 125.9 10.7 78 351-428 10-99 (99)
116 2x1f_A MRNA 3'-END-processing 99.7 7.6E-18 2.6E-22 126.8 9.0 79 4-84 1-85 (96)
117 2a3j_A U1 small nuclear ribonu 99.7 8.2E-18 2.8E-22 132.2 9.5 83 351-433 26-113 (127)
118 2dnp_A RNA-binding protein 14; 99.7 1.2E-17 3.9E-22 124.1 9.8 79 352-434 7-85 (90)
119 3p5t_L Cleavage and polyadenyl 99.7 2.8E-18 9.4E-23 127.4 6.3 80 355-434 2-87 (90)
120 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4E-22 122.2 9.5 75 5-81 1-81 (83)
121 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.4E-18 2.9E-22 124.1 8.8 78 2-81 3-86 (87)
122 2cq2_A Hypothetical protein LO 99.7 3.6E-18 1.2E-22 130.1 6.8 80 2-83 22-108 (114)
123 2cq3_A RNA-binding protein 9; 99.7 2E-17 6.8E-22 126.3 11.0 81 2-84 12-96 (103)
124 1x4a_A Splicing factor, argini 99.7 1.3E-17 4.5E-22 128.6 10.1 81 352-432 20-101 (109)
125 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.9E-22 124.3 10.8 77 350-430 18-95 (97)
126 1whw_A Hypothetical protein ri 99.7 1.5E-17 5.2E-22 125.9 10.1 80 2-83 5-90 (99)
127 1x4h_A RNA-binding protein 28; 99.7 2E-17 6.8E-22 128.2 10.8 84 352-435 13-106 (111)
128 2dgu_A Heterogeneous nuclear r 99.7 1.7E-17 5.9E-22 126.5 10.3 80 352-435 9-88 (103)
129 2dgt_A RNA-binding protein 30; 99.7 2.4E-17 8.2E-22 122.9 10.8 78 352-433 8-85 (92)
130 2dnq_A RNA-binding protein 4B; 99.7 2E-17 7E-22 122.7 10.3 78 2-83 5-82 (90)
131 1x5u_A Splicing factor 3B subu 99.7 1.7E-17 5.7E-22 127.2 10.1 83 352-434 13-99 (105)
132 2fy1_A RNA-binding motif prote 99.7 1.7E-17 6E-22 129.1 10.3 82 353-434 6-90 (116)
133 2dhg_A TRNA selenocysteine ass 99.7 1.4E-17 4.6E-22 127.5 9.5 84 352-435 7-95 (104)
134 1x5t_A Splicing factor 3B subu 99.7 1.2E-17 4E-22 125.8 9.0 80 2-83 2-88 (96)
135 2dnm_A SRP46 splicing factor; 99.7 1.2E-17 4.2E-22 127.4 9.1 81 352-432 11-95 (103)
136 2dnz_A Probable RNA-binding pr 99.7 2.5E-17 8.4E-22 123.8 10.6 79 2-82 2-86 (95)
137 1sjr_A Polypyrimidine tract-bi 99.7 2E-17 6.9E-22 133.9 10.7 78 355-432 47-126 (164)
138 2la4_A Nuclear and cytoplasmic 99.7 8.1E-18 2.8E-22 127.9 7.8 76 3-80 25-100 (101)
139 2la4_A Nuclear and cytoplasmic 99.7 9.1E-18 3.1E-22 127.6 8.0 77 352-430 25-101 (101)
140 2cph_A RNA binding motif prote 99.7 2.3E-17 7.8E-22 126.9 10.3 83 352-434 13-101 (107)
141 1x5s_A Cold-inducible RNA-bind 99.7 1.2E-17 4E-22 127.3 8.5 81 1-83 8-94 (102)
142 3ns6_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 128.4 6.5 78 354-431 6-94 (100)
143 3ulh_A THO complex subunit 4; 99.7 3.5E-17 1.2E-21 125.8 11.3 79 351-429 26-107 (107)
144 2diu_A KIAA0430 protein; struc 99.7 1.9E-17 6.4E-22 119.1 8.9 75 351-431 5-85 (96)
145 2cpf_A RNA binding motif prote 99.7 1.6E-17 5.6E-22 125.5 9.1 80 2-83 2-90 (98)
146 2ytc_A PRE-mRNA-splicing facto 99.7 1.6E-17 5.3E-22 122.0 8.8 75 352-428 10-85 (85)
147 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.7E-22 129.1 8.2 79 3-83 8-86 (111)
148 2do0_A HnRNP M, heterogeneous 99.7 4.4E-17 1.5E-21 126.9 11.7 81 352-432 13-96 (114)
149 2cpi_A CCR4-NOT transcription 99.7 1.3E-17 4.3E-22 129.0 8.5 81 352-432 13-103 (111)
150 2dgs_A DAZ-associated protein 99.7 3.2E-17 1.1E-21 124.1 10.5 79 2-83 7-91 (99)
151 1oo0_B CG8781-PA, drosophila Y 99.7 2.1E-17 7.2E-22 127.8 9.6 81 352-432 24-108 (110)
152 2kvi_A Nuclear polyadenylated 99.7 1.6E-17 5.5E-22 124.8 8.7 79 351-433 7-86 (96)
153 2div_A TRNA selenocysteine ass 99.7 1.7E-17 6E-22 125.6 8.9 80 352-431 7-95 (99)
154 2kxn_B Transformer-2 protein h 99.7 1.4E-17 4.9E-22 132.0 8.7 81 351-431 43-127 (129)
155 2jvo_A Nucleolar protein 3; nu 99.7 2.2E-17 7.4E-22 126.7 9.3 78 352-433 29-106 (108)
156 2d9p_A Polyadenylate-binding p 99.7 2.6E-17 8.7E-22 125.6 9.6 79 3-83 13-95 (103)
157 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-17 7.2E-22 128.8 9.3 80 352-431 6-86 (115)
158 2dgp_A Bruno-like 4, RNA bindi 99.7 2.4E-17 8.3E-22 126.5 9.4 84 352-435 11-101 (106)
159 1x4c_A Splicing factor, argini 99.7 3.4E-17 1.2E-21 125.9 10.2 77 353-432 14-95 (108)
160 2cq2_A Hypothetical protein LO 99.7 1.7E-17 5.8E-22 126.4 8.3 81 350-432 21-108 (114)
161 2dgo_A Cytotoxic granule-assoc 99.7 5.1E-17 1.7E-21 126.7 11.3 80 2-83 12-97 (115)
162 2ek1_A RNA-binding protein 12; 99.7 1.4E-17 4.9E-22 125.1 7.7 78 352-429 13-94 (95)
163 2e44_A Insulin-like growth fac 99.7 2.4E-17 8.2E-22 124.0 9.0 80 353-432 14-94 (96)
164 2cpd_A Apobec-1 stimulating pr 99.7 5.9E-17 2E-21 122.6 11.1 78 351-432 12-91 (99)
165 1x4c_A Splicing factor, argini 99.7 5.6E-17 1.9E-21 124.7 11.1 78 3-83 13-95 (108)
166 1wi8_A EIF-4B, eukaryotic tran 99.7 3.1E-17 1.1E-21 125.3 9.5 81 352-434 13-98 (104)
167 2cph_A RNA binding motif prote 99.7 2.6E-17 8.9E-22 126.6 9.0 80 2-83 12-99 (107)
168 1p1t_A Cleavage stimulation fa 99.7 1.8E-17 6.3E-22 126.8 8.0 80 354-433 8-91 (104)
169 1s79_A Lupus LA protein; RRM, 99.7 2.4E-17 8.3E-22 124.9 8.6 76 353-429 10-88 (103)
170 2hvz_A Splicing factor, argini 99.7 1.7E-17 5.7E-22 126.2 7.8 78 355-433 1-78 (101)
171 2err_A Ataxin-2-binding protei 99.7 2.8E-17 9.5E-22 126.5 9.1 78 2-81 26-107 (109)
172 2dnh_A Bruno-like 5, RNA bindi 99.7 3.7E-17 1.2E-21 125.3 9.7 78 3-82 13-98 (105)
173 1u6f_A Tcubp1, RNA-binding pro 99.7 7E-17 2.4E-21 130.5 11.8 83 352-434 40-126 (139)
174 2khc_A Testis-specific RNP-typ 99.7 2E-17 6.8E-22 129.6 8.3 78 351-428 37-118 (118)
175 2cqp_A RNA-binding protein 12; 99.7 2.5E-17 8.6E-22 124.5 8.5 80 352-431 13-96 (98)
176 2dng_A Eukaryotic translation 99.7 5.7E-17 1.9E-21 123.6 10.5 80 352-433 13-96 (103)
177 3ucg_A Polyadenylate-binding p 99.7 3.7E-17 1.3E-21 121.2 9.2 76 354-430 6-85 (89)
178 2do4_A Squamous cell carcinoma 99.7 3.6E-17 1.2E-21 124.1 9.3 78 3-82 15-97 (100)
179 2cq0_A Eukaryotic translation 99.7 6.2E-17 2.1E-21 123.5 10.6 79 2-82 12-96 (103)
180 2dgt_A RNA-binding protein 30; 99.7 6.5E-17 2.2E-21 120.5 10.4 77 2-82 7-83 (92)
181 2ywk_A Putative RNA-binding pr 99.7 3.1E-17 1E-21 123.2 8.6 77 2-80 13-94 (95)
182 2dnm_A SRP46 splicing factor; 99.7 3.9E-17 1.3E-21 124.6 9.3 78 3-82 11-94 (103)
183 2dgx_A KIAA0430 protein; RRM d 99.7 3.2E-17 1.1E-21 123.2 8.6 77 3-81 7-90 (96)
184 2kt5_A RNA and export factor-b 99.7 8.1E-17 2.8E-21 127.3 11.2 84 352-435 33-119 (124)
185 1nu4_A U1A RNA binding domain; 99.7 1.6E-17 5.4E-22 125.4 6.8 82 352-433 6-92 (97)
186 2cqd_A RNA-binding region cont 99.7 4.5E-17 1.5E-21 127.1 9.6 81 352-433 15-99 (116)
187 2xnq_A Nuclear polyadenylated 99.7 5.2E-17 1.8E-21 122.1 9.5 76 2-81 19-95 (97)
188 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 123.4 12.6 79 352-432 21-104 (124)
189 2cpx_A Hypothetical protein FL 99.7 2.9E-17 9.8E-22 128.1 8.4 83 352-434 23-109 (115)
190 2fy1_A RNA-binding motif prote 99.7 7.2E-17 2.5E-21 125.6 10.6 81 2-84 4-89 (116)
191 2jrs_A RNA-binding protein 39; 99.7 3.9E-17 1.3E-21 125.4 8.9 78 2-81 23-106 (108)
192 2dh8_A DAZ-associated protein 99.7 3.2E-17 1.1E-21 125.6 8.4 83 352-435 14-100 (105)
193 2cpz_A CUG triplet repeat RNA- 99.7 4.4E-17 1.5E-21 127.0 9.4 79 3-83 23-107 (115)
194 2dgu_A Heterogeneous nuclear r 99.7 5E-17 1.7E-21 123.9 9.3 78 3-84 9-86 (103)
195 3n9u_C Cleavage and polyadenyl 99.7 3.4E-17 1.2E-21 134.1 8.9 81 353-433 54-140 (156)
196 2cqh_A IGF-II mRNA-binding pro 99.7 3.8E-17 1.3E-21 122.2 8.4 80 352-434 6-87 (93)
197 2jvo_A Nucleolar protein 3; nu 99.7 6E-17 2E-21 124.2 9.7 76 2-81 28-103 (108)
198 1x4e_A RNA binding motif, sing 99.7 9.5E-18 3.3E-22 123.2 4.9 78 352-429 3-84 (85)
199 3zzy_A Polypyrimidine tract-bi 99.7 1.8E-16 6E-21 123.7 12.2 90 245-335 29-124 (130)
200 2cpe_A RNA-binding protein EWS 99.7 5.7E-17 2E-21 125.9 9.5 82 352-433 13-106 (113)
201 1x5p_A Negative elongation fac 99.7 1.5E-16 5.3E-21 119.7 11.2 81 352-436 13-93 (97)
202 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-16 6E-21 120.9 11.6 83 352-436 13-99 (103)
203 3s7r_A Heterogeneous nuclear r 99.7 1.3E-16 4.3E-21 117.7 10.4 75 352-427 9-87 (87)
204 3ex7_B RNA-binding protein 8A; 99.7 6.6E-17 2.3E-21 128.2 9.5 82 352-433 20-105 (126)
205 2dnp_A RNA-binding protein 14; 99.7 4.6E-17 1.6E-21 120.8 8.0 77 2-82 6-82 (90)
206 1nu4_A U1A RNA binding domain; 99.7 4.7E-17 1.6E-21 122.7 8.1 79 2-82 5-90 (97)
207 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-17 6.7E-22 125.4 5.9 78 352-431 17-99 (100)
208 4a8x_A RNA-binding protein wit 99.7 7.4E-17 2.5E-21 119.3 8.9 77 3-81 2-85 (88)
209 1p27_B RNA-binding protein 8A; 99.7 5.6E-17 1.9E-21 124.5 8.5 77 3-81 21-103 (106)
210 1x4h_A RNA-binding protein 28; 99.7 6.8E-17 2.3E-21 125.1 9.1 79 2-82 12-102 (111)
211 2kvi_A Nuclear polyadenylated 99.7 6.1E-17 2.1E-21 121.7 8.4 77 2-82 7-84 (96)
212 1wg1_A KIAA1579 protein, homol 99.7 9E-17 3.1E-21 118.6 9.2 78 2-82 2-79 (88)
213 2la6_A RNA-binding protein FUS 99.7 7.7E-17 2.6E-21 121.9 9.0 76 2-79 10-99 (99)
214 2dgv_A HnRNP M, heterogeneous 99.7 4.6E-17 1.6E-21 121.5 7.7 79 2-82 5-87 (92)
215 2rs2_A Musashi-1, RNA-binding 99.7 7E-17 2.4E-21 124.2 8.8 82 352-434 23-108 (109)
216 2cqh_A IGF-II mRNA-binding pro 99.7 3E-17 1E-21 122.7 6.5 79 2-82 5-84 (93)
217 1x4e_A RNA binding motif, sing 99.7 2.3E-17 7.8E-22 121.1 5.6 75 2-78 2-82 (85)
218 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-16 5.1E-21 121.6 10.3 77 3-83 13-96 (104)
219 2nlw_A Eukaryotic translation 99.7 5.8E-17 2E-21 123.9 7.9 78 353-430 14-100 (105)
220 2div_A TRNA selenocysteine ass 99.7 4.3E-17 1.5E-21 123.4 7.1 78 2-81 6-94 (99)
221 1oo0_B CG8781-PA, drosophila Y 99.7 8.4E-17 2.9E-21 124.3 8.9 77 3-81 24-106 (110)
222 2dhg_A TRNA selenocysteine ass 99.7 4E-17 1.4E-21 124.8 6.9 80 2-83 6-92 (104)
223 3ulh_A THO complex subunit 4; 99.7 1.1E-16 3.9E-21 123.0 9.4 76 2-79 26-106 (107)
224 2e5h_A Zinc finger CCHC-type a 99.7 3.9E-16 1.3E-20 116.9 12.2 77 241-318 13-94 (94)
225 1wg1_A KIAA1579 protein, homol 99.7 7.7E-17 2.6E-21 119.0 8.1 76 354-432 5-80 (88)
226 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-16 6.7E-21 130.5 11.5 80 352-431 37-120 (156)
227 2fc9_A NCL protein; structure 99.7 5.1E-17 1.8E-21 123.5 7.3 78 352-432 13-93 (101)
228 2do0_A HnRNP M, heterogeneous 99.7 2.3E-16 7.9E-21 122.7 11.2 78 2-81 12-94 (114)
229 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.9E-16 2.7E-20 117.3 13.9 80 241-321 12-94 (103)
230 2dgw_A Probable RNA-binding pr 99.7 2.3E-16 7.8E-21 117.3 10.6 77 353-431 9-88 (91)
231 2a3j_A U1 small nuclear ribonu 99.7 5.8E-17 2E-21 127.4 7.6 79 2-82 26-111 (127)
232 2krb_A Eukaryotic translation 99.7 2.7E-17 9.4E-22 119.4 5.3 71 355-425 2-81 (81)
233 2dis_A Unnamed protein product 99.7 1.1E-16 3.8E-21 123.5 9.0 82 2-83 5-94 (109)
234 1x5o_A RNA binding motif, sing 99.7 2.6E-16 8.8E-21 122.4 11.2 79 352-430 23-112 (114)
235 1wf1_A RNA-binding protein RAL 99.7 9.9E-17 3.4E-21 123.9 8.7 76 352-431 25-101 (110)
236 1s79_A Lupus LA protein; RRM, 99.7 6.4E-17 2.2E-21 122.6 7.4 76 2-80 8-88 (103)
237 1fjc_A Nucleolin RBD2, protein 99.7 6.8E-17 2.3E-21 121.6 7.3 80 352-432 14-93 (96)
238 1p1t_A Cleavage stimulation fa 99.7 3E-17 1E-21 125.6 5.4 79 3-83 6-90 (104)
239 2dgp_A Bruno-like 4, RNA bindi 99.7 1.1E-16 3.8E-21 122.8 8.5 79 2-82 10-97 (106)
240 2cpd_A Apobec-1 stimulating pr 99.7 2.4E-16 8.3E-21 119.2 10.3 77 2-82 12-90 (99)
241 2ki2_A SS-DNA binding protein 99.7 2.1E-17 7.2E-22 122.7 4.2 79 355-434 2-84 (90)
242 2cq4_A RNA binding motif prote 99.7 5.7E-17 2E-21 126.1 6.8 79 354-433 25-107 (114)
243 2cpe_A RNA-binding protein EWS 99.7 1.7E-16 5.8E-21 123.3 9.5 79 3-83 13-105 (113)
244 2jvr_A Nucleolar protein 3; RN 99.7 7.8E-17 2.7E-21 123.3 7.4 77 2-80 25-104 (111)
245 2dis_A Unnamed protein product 99.7 1.4E-16 4.7E-21 122.9 8.9 81 352-432 6-94 (109)
246 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5E-21 117.4 8.6 78 352-434 9-88 (89)
247 2dng_A Eukaryotic translation 99.7 3.2E-16 1.1E-20 119.4 10.7 77 2-82 12-94 (103)
248 2mss_A Protein (musashi1); RNA 99.7 6.1E-17 2.1E-21 115.7 6.2 71 356-427 1-75 (75)
249 3ucg_A Polyadenylate-binding p 99.7 1.4E-16 4.7E-21 118.1 8.3 75 4-81 5-85 (89)
250 2kxn_B Transformer-2 protein h 99.7 7.4E-17 2.5E-21 127.8 7.1 78 2-81 43-126 (129)
251 2diu_A KIAA0430 protein; struc 99.7 2E-16 6.9E-21 113.8 8.6 77 2-84 5-87 (96)
252 1x5p_A Negative elongation fac 99.7 3.7E-16 1.3E-20 117.6 10.6 77 3-83 13-89 (97)
253 3ns6_A Eukaryotic translation 99.7 5.4E-17 1.8E-21 122.8 6.0 77 4-82 5-94 (100)
254 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-16 5.6E-21 122.1 8.6 78 2-82 22-105 (109)
255 2cqp_A RNA-binding protein 12; 99.7 1.2E-16 4E-21 120.8 7.6 78 2-81 12-95 (98)
256 3ex7_B RNA-binding protein 8A; 99.7 1.5E-16 5.2E-21 126.1 8.6 79 2-82 19-103 (126)
257 2ek1_A RNA-binding protein 12; 99.7 1.2E-16 3.9E-21 120.1 7.4 76 3-80 13-94 (95)
258 3d2w_A TAR DNA-binding protein 99.7 1.7E-16 5.9E-21 117.0 8.1 77 2-82 8-85 (89)
259 3s7r_A Heterogeneous nuclear r 99.7 2.2E-16 7.6E-21 116.3 8.7 74 2-78 8-87 (87)
260 2cqc_A Arginine/serine-rich sp 99.7 6.2E-16 2.1E-20 116.0 11.3 78 241-319 12-94 (95)
261 2e5g_A U6 snRNA-specific termi 99.7 2.2E-16 7.6E-21 118.1 8.6 80 353-434 7-86 (94)
262 2cpi_A CCR4-NOT transcription 99.7 1.7E-16 6E-21 122.5 8.3 78 3-82 13-102 (111)
263 1x4a_A Splicing factor, argini 99.7 1.4E-15 4.9E-20 117.1 13.2 80 241-321 19-100 (109)
264 2jwn_A Embryonic polyadenylate 99.7 2.9E-16 1E-20 124.1 9.4 78 354-432 36-117 (124)
265 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-16 6.2E-21 120.1 7.7 78 352-431 13-93 (102)
266 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.7E-17 3E-21 115.6 5.7 72 355-427 1-76 (77)
267 2khc_A Testis-specific RNP-typ 99.7 5.6E-16 1.9E-20 121.3 10.8 77 241-318 37-118 (118)
268 1wf1_A RNA-binding protein RAL 99.7 3.1E-16 1.1E-20 121.0 9.1 75 3-81 25-100 (110)
269 2db1_A Heterogeneous nuclear r 99.7 1.6E-16 5.3E-21 124.1 7.4 78 353-431 16-99 (118)
270 1wg5_A Heterogeneous nuclear r 99.7 3E-16 1E-20 119.7 8.8 81 352-433 13-97 (104)
271 3p5t_L Cleavage and polyadenyl 99.7 8.1E-17 2.8E-21 119.4 5.5 74 6-81 2-83 (90)
272 1x4b_A Heterogeneous nuclear r 99.7 2.5E-16 8.6E-21 122.9 8.6 80 354-434 27-110 (116)
273 3pgw_S U1-70K; protein-RNA com 99.7 5.6E-17 1.9E-21 155.2 5.9 82 352-433 100-185 (437)
274 2fc9_A NCL protein; structure 99.7 4.1E-16 1.4E-20 118.4 9.5 76 2-82 12-92 (101)
275 1wg5_A Heterogeneous nuclear r 99.7 3.4E-16 1.2E-20 119.3 9.1 80 3-85 13-98 (104)
276 2hgl_A HNRPF protein, heteroge 99.7 1.6E-16 5.4E-21 126.3 7.5 79 353-432 43-127 (136)
277 2cpy_A RNA-binding protein 12; 99.7 9.6E-17 3.3E-21 124.6 6.1 80 352-432 13-96 (114)
278 2hzc_A Splicing factor U2AF 65 99.7 1.7E-16 5.7E-21 117.1 7.0 73 2-77 3-86 (87)
279 2dh8_A DAZ-associated protein 99.7 1.6E-16 5.5E-21 121.6 7.1 79 2-83 13-97 (105)
280 1x5u_A Splicing factor 3B subu 99.7 1.1E-15 3.6E-20 117.1 11.6 80 241-321 12-96 (105)
281 1u6f_A Tcubp1, RNA-binding pro 99.6 3.4E-16 1.2E-20 126.4 9.2 79 3-83 40-124 (139)
282 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.3E-16 1.1E-20 126.7 9.2 77 351-427 60-140 (140)
283 2lea_A Serine/arginine-rich sp 99.6 1.8E-16 6E-21 126.8 7.4 78 243-321 46-128 (135)
284 2e5j_A Methenyltetrahydrofolat 99.6 3.3E-16 1.1E-20 117.9 8.3 76 3-81 17-94 (97)
285 2m2b_A RNA-binding protein 10; 99.6 9E-17 3.1E-21 128.2 5.4 79 352-431 21-109 (131)
286 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-16 3.8E-21 121.2 5.6 76 2-81 16-98 (100)
287 2kt5_A RNA and export factor-b 99.6 7.3E-16 2.5E-20 121.7 10.4 78 3-82 33-115 (124)
288 2dgw_A Probable RNA-binding pr 99.6 5.4E-16 1.8E-20 115.3 9.0 75 3-81 8-87 (91)
289 3egn_A RNA-binding protein 40; 99.6 4.5E-16 1.5E-20 126.3 9.1 84 351-434 42-134 (143)
290 2db1_A Heterogeneous nuclear r 99.6 3.5E-16 1.2E-20 122.1 8.1 80 3-85 15-102 (118)
291 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-16 7.1E-21 113.6 6.1 70 6-78 1-76 (77)
292 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4.1E-21 121.4 4.9 79 353-433 16-98 (101)
293 1wf0_A TDP-43, TAR DNA-binding 99.6 5.8E-16 2E-20 114.3 8.4 78 2-83 2-80 (88)
294 2fc8_A NCL protein; structure 99.6 6.2E-16 2.1E-20 117.7 8.8 79 352-433 13-95 (102)
295 2cpy_A RNA-binding protein 12; 99.6 4.1E-16 1.4E-20 121.1 7.7 80 2-84 12-97 (114)
296 1x4b_A Heterogeneous nuclear r 99.6 6.3E-16 2.1E-20 120.6 8.8 77 4-83 26-108 (116)
297 1wel_A RNA-binding protein 12; 99.6 1.5E-16 5E-21 125.7 5.3 80 352-432 23-106 (124)
298 2cq4_A RNA binding motif prote 99.6 4.2E-16 1.4E-20 121.2 7.7 75 5-82 25-105 (114)
299 2nlw_A Eukaryotic translation 99.6 4.2E-16 1.4E-20 119.1 7.5 76 4-81 14-100 (105)
300 1x5o_A RNA binding motif, sing 99.6 8.6E-16 2.9E-20 119.5 9.2 77 3-81 23-112 (114)
301 2dnn_A RNA-binding protein 12; 99.6 5E-16 1.7E-20 118.6 7.5 76 354-431 16-94 (109)
302 1wez_A HnRNP H', FTP-3, hetero 99.6 7.8E-16 2.7E-20 116.6 8.5 76 3-82 13-93 (102)
303 3beg_B Splicing factor, argini 99.6 4E-16 1.4E-20 121.2 7.1 75 354-431 16-95 (115)
304 2krb_A Eukaryotic translation 99.6 2.1E-16 7.1E-21 114.7 5.0 69 5-75 1-80 (81)
305 3n9u_C Cleavage and polyadenyl 99.6 5E-16 1.7E-20 127.2 7.9 77 4-82 54-138 (156)
306 2cpx_A Hypothetical protein FL 99.6 7.4E-16 2.5E-20 120.1 8.3 80 2-83 22-107 (115)
307 2cqg_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.4E-20 116.1 9.5 78 2-83 12-95 (103)
308 2hgl_A HNRPF protein, heteroge 99.6 5.1E-16 1.7E-20 123.4 7.4 79 3-84 42-128 (136)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.1E-16 2.1E-20 125.2 8.1 75 2-78 60-140 (140)
310 2pe8_A Splicing factor 45; RRM 99.6 2.3E-15 7.8E-20 114.2 10.5 80 352-431 6-95 (105)
311 2mss_A Protein (musashi1); RNA 99.6 3.3E-16 1.1E-20 111.8 5.6 69 7-78 1-75 (75)
312 2f3j_A RNA and export factor b 99.6 1.2E-15 4E-20 127.8 9.7 83 352-434 86-171 (177)
313 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.3E-15 4.3E-20 125.6 9.6 78 3-82 37-120 (156)
314 2ki2_A SS-DNA binding protein 99.6 1.7E-16 5.7E-21 117.8 3.9 74 6-82 2-81 (90)
315 2jwn_A Embryonic polyadenylate 99.6 4.8E-16 1.6E-20 122.9 6.8 75 4-81 35-115 (124)
316 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.6E-20 114.4 8.2 78 2-82 5-83 (94)
317 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.1E-15 3.8E-20 127.0 9.1 78 3-82 70-153 (165)
318 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-16 6E-21 121.6 3.8 78 353-431 10-93 (107)
319 2bz2_A Negative elongation fac 99.6 1.7E-15 5.8E-20 118.4 9.4 78 352-433 37-114 (121)
320 3q2s_C Cleavage and polyadenyl 99.6 5.1E-16 1.8E-20 135.7 7.1 80 353-432 67-152 (229)
321 2bz2_A Negative elongation fac 99.6 1.6E-15 5.5E-20 118.6 9.1 76 3-82 37-112 (121)
322 2lcw_A RNA-binding protein FUS 99.4 4.6E-17 1.6E-21 127.0 0.0 82 352-433 5-98 (116)
323 1iqt_A AUF1, heterogeneous nuc 99.6 2.9E-16 9.9E-21 112.2 4.2 71 356-427 1-75 (75)
324 2lmi_A GRSF-1, G-rich sequence 99.6 4E-16 1.4E-20 119.6 5.2 80 3-85 9-96 (107)
325 2e44_A Insulin-like growth fac 99.6 8.1E-16 2.8E-20 115.6 6.7 78 3-82 13-93 (96)
326 2hzc_A Splicing factor U2AF 65 99.6 1.5E-15 5E-20 111.9 7.9 71 353-426 5-86 (87)
327 2dnn_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 116.9 7.2 76 5-84 16-96 (109)
328 1fj7_A Nucleolin RBD1, protein 99.6 3.6E-16 1.2E-20 118.7 4.7 76 3-82 15-96 (101)
329 2cqd_A RNA-binding region cont 99.6 9.4E-15 3.2E-19 113.9 12.4 79 241-321 14-97 (116)
330 2dha_A FLJ20171 protein; RRM d 99.6 6.3E-16 2.2E-20 120.6 5.5 80 352-432 21-107 (123)
331 3beg_B Splicing factor, argini 99.6 1.3E-15 4.4E-20 118.3 7.0 75 4-81 15-94 (115)
332 2xs2_A Deleted in azoospermia- 99.6 1.2E-15 4.2E-20 116.0 6.6 78 353-432 8-88 (102)
333 3u1l_A PRE-mRNA-splicing facto 99.6 2E-15 7E-20 130.9 8.6 77 3-81 132-229 (240)
334 1wel_A RNA-binding protein 12; 99.6 6.6E-16 2.3E-20 121.9 5.0 78 3-83 23-106 (124)
335 1fjc_A Nucleolin RBD2, protein 99.6 2.5E-15 8.6E-20 112.9 8.0 77 2-81 13-91 (96)
336 2pe8_A Splicing factor 45; RRM 99.6 3.3E-15 1.1E-19 113.3 8.4 80 2-83 5-96 (105)
337 1wf0_A TDP-43, TAR DNA-binding 99.6 9.2E-16 3.1E-20 113.2 5.2 77 353-434 4-82 (88)
338 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.9E-20 119.3 5.9 79 353-433 41-124 (126)
339 2lcw_A RNA-binding protein FUS 99.4 1.1E-16 3.6E-21 125.0 0.0 81 1-83 3-97 (116)
340 2dit_A HIV TAT specific factor 99.6 5E-15 1.7E-19 114.4 9.5 81 351-431 12-103 (112)
341 2hgn_A Heterogeneous nuclear r 99.6 5E-16 1.7E-20 123.9 3.7 78 353-432 45-125 (139)
342 1iqt_A AUF1, heterogeneous nuc 99.6 7.1E-16 2.4E-20 110.1 3.9 69 7-78 1-75 (75)
343 2fc8_A NCL protein; structure 99.6 5E-15 1.7E-19 112.6 8.7 76 2-82 12-93 (102)
344 2dha_A FLJ20171 protein; RRM d 99.6 9.6E-16 3.3E-20 119.5 4.5 80 3-85 21-109 (123)
345 2xs2_A Deleted in azoospermia- 99.6 2.6E-15 9E-20 114.1 6.3 76 3-82 7-87 (102)
346 2hgm_A HNRPF protein, heteroge 99.6 3E-15 1E-19 116.9 6.4 77 3-83 40-123 (126)
347 3u1l_A PRE-mRNA-splicing facto 99.6 4.9E-15 1.7E-19 128.5 8.3 79 352-432 132-231 (240)
348 2f3j_A RNA and export factor b 99.6 6.7E-15 2.3E-19 123.2 8.6 78 3-82 86-168 (177)
349 3v4m_A Splicing factor U2AF 65 99.6 8.2E-15 2.8E-19 111.2 8.0 80 352-431 3-98 (105)
350 3egn_A RNA-binding protein 40; 99.6 5.7E-15 1.9E-19 119.7 7.3 78 2-81 42-130 (143)
351 2m2b_A RNA-binding protein 10; 99.5 5.7E-15 1.9E-19 117.7 6.8 79 241-321 20-109 (131)
352 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-14 4.5E-19 112.1 8.6 79 352-430 18-109 (118)
353 2hgn_A Heterogeneous nuclear r 99.5 1.9E-15 6.5E-20 120.5 3.7 77 3-83 44-125 (139)
354 3q2s_C Cleavage and polyadenyl 99.5 7E-15 2.4E-19 128.5 7.4 77 4-82 67-151 (229)
355 3s6e_A RNA-binding protein 39; 99.5 1.9E-14 6.5E-19 110.4 8.7 80 352-431 5-94 (114)
356 2voo_A Lupus LA protein; RNA-b 99.5 4.8E-14 1.7E-18 119.8 11.4 78 354-432 109-189 (193)
357 2dnl_A Cytoplasmic polyadenyla 99.5 1.3E-14 4.6E-19 112.5 7.0 73 353-428 7-86 (114)
358 2dnl_A Cytoplasmic polyadenyla 99.5 2.3E-14 7.9E-19 111.1 7.3 73 2-79 5-86 (114)
359 2dit_A HIV TAT specific factor 99.5 8.7E-14 3E-18 107.4 10.2 79 2-82 12-103 (112)
360 2j8a_A Histone-lysine N-methyl 99.5 2.8E-14 9.6E-19 108.7 7.1 75 355-429 3-95 (136)
361 3v4m_A Splicing factor U2AF 65 99.5 5.5E-14 1.9E-18 106.6 7.7 79 2-82 2-98 (105)
362 3pgw_S U1-70K; protein-RNA com 99.5 5.8E-14 2E-18 134.4 9.1 78 3-82 100-183 (437)
363 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5.1E-18 106.1 8.2 78 3-82 18-110 (118)
364 2voo_A Lupus LA protein; RNA-b 99.4 1.4E-13 4.8E-18 117.0 8.0 73 5-80 109-186 (193)
365 3tht_A Alkylated DNA repair pr 99.4 1.9E-13 6.5E-18 125.1 8.9 78 350-429 14-98 (345)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 6.8E-13 2.3E-17 99.1 10.1 76 355-433 11-93 (100)
367 1jmt_A Splicing factor U2AF 35 99.4 5E-14 1.7E-18 106.7 3.7 70 359-428 20-104 (104)
368 2j8a_A Histone-lysine N-methyl 99.4 4.1E-13 1.4E-17 102.3 7.7 75 245-320 3-96 (136)
369 3tht_A Alkylated DNA repair pr 99.4 2.5E-13 8.5E-18 124.3 7.7 78 2-79 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.4 1.3E-12 4.4E-17 100.1 9.1 80 2-83 4-95 (114)
371 2dnr_A Synaptojanin-1; RRM dom 99.4 2E-12 6.8E-17 92.2 7.8 79 350-433 3-89 (91)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.7E-12 1.6E-16 94.5 9.8 75 4-82 9-91 (100)
373 1jmt_A Splicing factor U2AF 35 99.3 4.3E-13 1.5E-17 101.5 2.8 66 11-78 21-103 (104)
374 2dnr_A Synaptojanin-1; RRM dom 99.3 1.1E-11 3.6E-16 88.4 7.6 78 1-83 3-88 (91)
375 1owx_A Lupus LA protein, SS-B, 99.2 2.9E-11 9.8E-16 92.5 8.6 77 3-79 16-94 (121)
376 1owx_A Lupus LA protein, SS-B, 99.2 2.5E-11 8.5E-16 92.8 7.7 81 350-432 14-98 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.2 3E-11 1E-15 86.5 4.9 74 350-428 11-93 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 6.4E-11 2.2E-15 84.8 5.8 72 1-77 11-91 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 5.2E-09 1.8E-13 91.2 9.9 77 355-431 125-214 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.7 1.2E-07 4.1E-12 69.1 9.4 71 243-315 20-95 (117)
381 2l9w_A U4/U6 snRNA-associated- 98.7 7.2E-08 2.5E-12 70.2 8.0 70 354-425 21-95 (117)
382 3dxb_A Thioredoxin N-terminall 98.6 7.4E-08 2.5E-12 83.8 6.8 77 4-82 123-214 (222)
383 2dhx_A Poly (ADP-ribose) polym 98.2 1E-05 3.5E-10 58.6 8.9 68 5-77 8-80 (104)
384 1wey_A Calcipressin 1; structu 98.2 5.7E-06 1.9E-10 60.3 7.5 75 355-431 6-85 (104)
385 1wey_A Calcipressin 1; structu 98.1 9.9E-06 3.4E-10 59.0 6.7 75 245-320 6-84 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.9 0.00015 5E-09 52.6 11.0 70 243-317 7-81 (104)
387 1whv_A Poly(A)-specific ribonu 97.9 3.2E-05 1.1E-09 55.3 6.6 55 5-62 16-70 (100)
388 3ctr_A Poly(A)-specific ribonu 97.9 2.8E-05 9.5E-10 55.7 5.9 55 5-62 6-60 (101)
389 1wwh_A Nucleoporin 35, nucleop 97.7 0.0002 6.8E-09 53.8 8.2 69 244-316 24-93 (119)
390 1uw4_A UPF3X; nonsense mediate 97.5 0.00084 2.9E-08 48.1 8.8 76 356-431 3-89 (91)
391 1whv_A Poly(A)-specific ribonu 97.4 0.00025 8.6E-09 50.7 5.7 55 354-413 16-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 97.4 0.00069 2.3E-08 50.9 8.2 69 354-426 24-93 (119)
393 1uw4_A UPF3X; nonsense mediate 97.4 0.00046 1.6E-08 49.5 6.9 59 6-64 2-68 (91)
394 3ctr_A Poly(A)-specific ribonu 97.3 0.00026 8.8E-09 50.8 4.7 54 355-413 7-60 (101)
395 3pq1_A Poly(A) RNA polymerase; 96.9 0.00033 1.1E-08 66.4 2.8 55 5-60 53-108 (464)
396 3p3d_A Nucleoporin 53; structu 96.7 0.002 6.8E-08 49.1 4.8 71 245-318 8-97 (132)
397 2l08_A Regulator of nonsense t 96.6 0.0048 1.6E-07 44.4 6.0 77 354-430 9-96 (97)
398 3pq1_A Poly(A) RNA polymerase; 96.6 0.0011 3.8E-08 62.8 3.4 55 354-410 53-107 (464)
399 2l08_A Regulator of nonsense t 96.4 0.0024 8.4E-08 45.9 3.7 60 5-64 9-76 (97)
400 3p3d_A Nucleoporin 53; structu 96.1 0.0039 1.3E-07 47.5 3.4 74 355-430 8-99 (132)
401 3d45_A Poly(A)-specific ribonu 93.5 0.15 5.2E-06 49.3 7.4 57 5-64 440-496 (507)
402 3d45_A Poly(A)-specific ribonu 91.8 0.37 1.3E-05 46.6 7.6 56 354-414 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 75.2 9.4 0.00032 25.7 6.3 69 246-318 2-75 (76)
404 4eyt_A Telomerase associated p 64.7 32 0.0011 23.7 7.8 55 354-412 12-66 (129)
405 2g0c_A ATP-dependent RNA helic 56.7 26 0.00088 23.4 5.5 60 364-428 11-75 (76)
406 4e8u_A Putative uncharacterize 55.3 23 0.00079 28.2 5.6 51 355-405 13-75 (172)
407 4eyt_A Telomerase associated p 38.3 96 0.0033 21.3 8.3 69 242-316 10-78 (129)
408 4e8u_A Putative uncharacterize 36.7 63 0.0022 25.7 5.4 52 7-59 14-81 (172)
409 3ts2_A Protein LIN-28 homolog 24.9 15 0.00051 28.7 -0.1 28 369-400 2-29 (148)
410 3lpe_A Putative transcription 21.3 2.1E+02 0.0072 19.8 5.5 33 272-304 40-72 (92)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.2e-41 Score=312.24 Aligned_cols=235 Identities=20% Similarity=0.202 Sum_probs=207.1
Q ss_pred EEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecCCcce
Q 013749 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181 (437)
Q Consensus 102 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~~~~~ 181 (437)
+|||+|||.++++++|+++|+.|| |..+.+ ++++|+ |||+|.+.++|.+|++.++|..+.+ ..+.+.++.
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~----- 93 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGT-AFVTLLNGEQAEAAINAFHQSRLRE--RELSVQLQP----- 93 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTE-EEEEESSHHHHHHHHHHHTTCEETT--EECEEEECC-----
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCE-EEEEeCCHHHHHHHHHHcCCCeeCC--eEEEEEecC-----
Confidence 499999999999999999999999 888877 778898 9999999999999999999999876 455665542
Q ss_pred eeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHH
Q 013749 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 261 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~ 261 (437)
+.++|||+|||. .+++++
T Consensus 94 -------------------------------------------------------------~~~~l~v~nlp~-~~t~~~ 111 (284)
T 3smz_A 94 -------------------------------------------------------------TDALLCVANLPP-SLTQQQ 111 (284)
T ss_dssp -------------------------------------------------------------CSCEEEEESCCT-TCCHHH
T ss_pred -------------------------------------------------------------CCCEEEEcCCCC-cCCHHH
Confidence 112899999998 699999
Q ss_pred HHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccccCCC
Q 013749 262 LFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNL 336 (437)
Q Consensus 262 l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
|+++|+.||.|..+.++.+. +|+|||+|.+.++|..|+..|+|..+.|+.|.|.|+......
T Consensus 112 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------------- 178 (284)
T 3smz_A 112 FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------------- 178 (284)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------------
T ss_pred HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------------
Confidence 99999999999999988754 679999999999999999999999999999999998754211
Q ss_pred CCCCcchhccccccCCCcceEEecCCCCCC-CHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHh
Q 013749 337 NRFNRNAAKNYRYCCSPTKMIHLSTLPQDV-TEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCK 412 (437)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l 412 (437)
....+.++|||+|||..+ ++++|+++|++||.|.+++++.+. .+|+|||+|.+.++|.+|++.|
T Consensus 179 ------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 179 ------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp ------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred ------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHh
Confidence 012345889999999995 999999999999999999998753 2789999999999999999999
Q ss_pred CCCccCCcEEEEEeccCcccc
Q 013749 413 HASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 413 ~~~~~~g~~l~v~~s~~~~~~ 433 (437)
||..+.|+.|+|+|++++..+
T Consensus 247 ~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 247 DGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TTCEETTEECEEEECCSSSCH
T ss_pred CCCccCCeEEEEEEecCCCcc
Confidence 999999999999999988754
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.2e-41 Score=310.35 Aligned_cols=236 Identities=19% Similarity=0.274 Sum_probs=206.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
+++++|||+|||+++|+++|+++|++|| |.++.+.+.+|||||+|.+.++|.+|++.+++. .+.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~~~~~- 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQS--RLRERELSVQLQPTD- 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCC--eeCCeEEEEEecCCC-
Confidence 4689999999999999999999999999 999999999999999999999999999999998 899999999985432
Q ss_pred ccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHHHH
Q 013749 83 LTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSS 157 (437)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~~~ 157 (437)
.+|||+|||.++++++|+++|+.||.|..+.+. +.++|+ |||+|.+.++|.+|++.
T Consensus 96 ------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 96 ------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGY-GFAEYMKKDSAARAKSD 156 (284)
T ss_dssp ------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHH
T ss_pred ------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceE-EEEEECCHHHHHHHHHH
Confidence 139999999999999999999999999998775 335677 99999999999999999
Q ss_pred cCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCC
Q 013749 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPG 237 (437)
Q Consensus 158 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (437)
|+|..+.| ..|.+.++......
T Consensus 157 l~~~~~~g--~~i~v~~a~~~~~~-------------------------------------------------------- 178 (284)
T 3smz_A 157 LLGKPLGP--RTLYVHWTDAGQLT-------------------------------------------------------- 178 (284)
T ss_dssp HTTCEETT--EECEEEECCGGGCC--------------------------------------------------------
T ss_pred hCCCEeCC--cEEEEEECCCCCCC--------------------------------------------------------
Confidence 99988866 56788887532100
Q ss_pred CCCCCCccEEEEecCCCCCC-CHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 013749 238 ITGTNDRCTVLVSNLNSDRI-DEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRL 312 (437)
Q Consensus 238 ~~~~~~~~~l~V~nl~~~~~-t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 312 (437)
....+.++|||+|||. .+ ++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|..|+..|||..++|+.|
T Consensus 179 -~~~~~~~~l~v~nlp~-~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 179 -PALLHSRCLCVDRLPP-GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp -TTTTSCSEEEEECCCT-TCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred -cccCCccEEEEecCCc-ccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 0012234899999998 65 999999999999999999988863 6799999999999999999999999999999
Q ss_pred EEEEccCCC
Q 013749 313 EVNFSKHPN 321 (437)
Q Consensus 313 ~v~~~~~~~ 321 (437)
+|.|+.+..
T Consensus 257 ~v~~a~~~~ 265 (284)
T 3smz_A 257 RVSFCAPGP 265 (284)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999998664
No 3
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.2e-41 Score=311.69 Aligned_cols=239 Identities=17% Similarity=0.220 Sum_probs=203.0
Q ss_pred cEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee---CCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEe
Q 013749 99 RILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK---SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 99 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~---~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
...+|||+|||.++++++|+++|+.||.|..|.+... ++|+ |||+|.+.++|.+|++ +++..+.++ .+.+.++
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~A~~A~~-~~~~~~~g~--~i~v~~~ 115 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRF-ARIEFARYDGALAAIT-KTHKVVGQN--EIIVSHL 115 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEE-EEEEESSHHHHHHHHT-TTTCEETTE--ECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEE-EEEEECCHHHHHHHHH-hCCcEeCCc--EEEEEEC
Confidence 3445999999999999999999999999999988743 4687 9999999999999995 899888764 4566554
Q ss_pred cCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCC
Q 013749 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSD 255 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 255 (437)
. .++|||+|||.
T Consensus 116 ~-------------------------------------------------------------------~~~l~v~nlp~- 127 (292)
T 2ghp_A 116 T-------------------------------------------------------------------ECTLWMTNFPP- 127 (292)
T ss_dssp C-------------------------------------------------------------------SCEEEEECCCT-
T ss_pred C-------------------------------------------------------------------CCEEEEECCCC-
Confidence 2 12899999998
Q ss_pred CCCHHHHHHHHhccC-CeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccc
Q 013749 256 RIDEDKLFNLFSLYG-NIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHE 330 (437)
Q Consensus 256 ~~t~~~l~~~F~~~G-~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~ 330 (437)
.+++++|+++|+.|| .|..+.+..+. +|+|||+|.+.++|..|+..|+|..+.|+.|.|.|+.+.......
T Consensus 128 ~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---- 203 (292)
T 2ghp_A 128 SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---- 203 (292)
T ss_dssp TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----
Confidence 699999999999999 99999988743 789999999999999999999999999999999998765321100
Q ss_pred cccCCCCCCCcchhccccccCCCcceEEecCCCCC-CCHHHHHHhhhccCCeeEEEEEeeC-----CceEEEEEecCHHH
Q 013749 331 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQ 404 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~-----~~~~afV~f~~~~~ 404 (437)
.....+.++|||+|||.. +++++|+++|++||.|..++++.+. .+|+|||+|.+.++
T Consensus 204 -----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 204 -----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp --------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH
T ss_pred -----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH
Confidence 012345689999999999 9999999999999999999998653 37899999999999
Q ss_pred HHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 405 ATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 405 A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
|.+|+ .|||..|.|+.|+|+||+++.
T Consensus 267 A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 267 AERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 99999 999999999999999999863
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=5.1e-41 Score=309.24 Aligned_cols=238 Identities=18% Similarity=0.211 Sum_probs=200.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+++++|||+|||+++|+++|+++|++||+|.+|+++++ +|||||+|.+.++|.+|++ +++. .++|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~--~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHK--VVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTC--EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCc--EeCCcEEEEEE
Confidence 357899999999999999999999999999999999984 6999999999999999996 7877 89999999998
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCC-ceeEEEEE----eeCCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHG-FVEKIVTF----QKSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~i~~~----~~~~g~~afV~f~~~~~A~ 152 (437)
+.. .+|||+|||.++++++|+++|+.|| .|..+.+. +.++|+ |||+|.+.++|.
T Consensus 115 ~~~--------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~ 173 (292)
T 2ghp_A 115 LTE--------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRF-AYIDVTSKEDAR 173 (292)
T ss_dssp CCS--------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCE-EEEECSSHHHHH
T ss_pred CCC--------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceE-EEEEECCHHHHH
Confidence 532 2399999999999999999999999 99998775 356888 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhcCC
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGVAFPQMANAAAIAAAFGG 232 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (437)
+|++.|+|..+.| ..|.+.++.+...... .
T Consensus 174 ~A~~~l~g~~~~g--~~l~v~~a~~~~~~~~-----------~------------------------------------- 203 (292)
T 2ghp_A 174 YCVEKLNGLKIEG--YTLVTKVSNPLEKSKR-----------T------------------------------------- 203 (292)
T ss_dssp HHHHHHTTCEETT--EECEEEECCCC------------------------------------------------------
T ss_pred HHHHHhCCCEeCC--cEEEEEECCCCccccc-----------c-------------------------------------
Confidence 9999999999976 5778888753211000 0
Q ss_pred CCCCCCCCCCCccEEEEecCCCCC-CCHHHHHHHHhccCCeEEEEEecCC------CCeEEEEeCCHHHHHHHHHHhcCc
Q 013749 233 GLPPGITGTNDRCTVLVSNLNSDR-IDEDKLFNLFSLYGNIIRIKLLRNK------PDHALVQMGDGFQAELAVHFLKGA 305 (437)
Q Consensus 233 ~~~~~~~~~~~~~~l~V~nl~~~~-~t~~~l~~~F~~~G~v~~v~i~~~~------~g~~fV~f~~~~~A~~A~~~l~g~ 305 (437)
.....+.++|||+|||. . +++++|+++|++||.|..+++..+. +|+|||+|.+.++|..|+ .|||.
T Consensus 204 -----~~~~~~~~~l~v~nlp~-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 204 -----DSATLEGREIMIRNLST-ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS 276 (292)
T ss_dssp --------CCTTTEEEEEEECT-TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE
T ss_pred -----cccCCCCceEEEECCCc-ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC
Confidence 00122345899999998 8 9999999999999999999998753 589999999999999999 99999
Q ss_pred eeCCcEEEEEEccCC
Q 013749 306 LLFGKRLEVNFSKHP 320 (437)
Q Consensus 306 ~~~g~~l~v~~~~~~ 320 (437)
.++|+.|+|.|+++.
T Consensus 277 ~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 277 LLGNREISVSLADKK 291 (292)
T ss_dssp EETTEEEEEEECCCC
T ss_pred EECCcEEEEEEecCC
Confidence 999999999998864
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=8.1e-35 Score=251.39 Aligned_cols=184 Identities=27% Similarity=0.515 Sum_probs=153.4
Q ss_pred CccEEEEecCC-CCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 243 DRCTVLVSNLN-SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 243 ~~~~l~V~nl~-~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
++++|||+||| . .+++++|+++|++||.|.+|+++.+++|+|||+|.+.++|..|++.|||..+.|+.|+|.|++...
T Consensus 3 ~~~~l~V~nL~~~-~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQS-KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTT-TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcc-cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 45699999999 6 699999999999999999999999889999999999999999999999999999999999998654
Q ss_pred CCCCC---------CccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCe--eEEEEEeeC
Q 013749 322 ITQGA---------DTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMN 390 (437)
Q Consensus 322 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v--~~~~i~~~~ 390 (437)
..+.. ...+|.+.+..++..+...+.....+|+++|||+|||+++|+++|+++|++||.| .++++++++
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 32211 1234544444555443332222345788999999999999999999999999999 899998764
Q ss_pred C--ceEEEEEecCHHHHHHHHHHhCCCccCCc----EEEEEec
Q 013749 391 G--KKQALVLFETEEQATEALVCKHASSLGGS----IIRISFS 427 (437)
Q Consensus 391 ~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~----~l~v~~s 427 (437)
+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|.|+
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3 58999999999999999999999999986 5666664
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=3.7e-33 Score=246.78 Aligned_cols=189 Identities=38% Similarity=0.640 Sum_probs=161.5
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
.+++++|||+|||+..+++++|+++|++||.|.+|++..+.+|+|||+|.+.++|.+|++.|+|..+.|+.|+|.|++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35567999999997239999999999999999999999988899999999999999999999999999999999999865
Q ss_pred CC-------CCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccC-CeeEEEEEeeCCc
Q 013749 321 NI-------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGK 392 (437)
Q Consensus 321 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~ 392 (437)
.. .......++......++..+...+.....+++++|||+|||..+++++|+++|++|| .|..+++++ +++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~ 189 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDR 189 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SST
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCC
Confidence 33 112233445554445555444444444567889999999999999999999999999 999999975 358
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCccC-CcEEEEEeccCc
Q 013749 393 KQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQLQ 430 (437)
Q Consensus 393 ~~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~s~~~ 430 (437)
|+|||+|.+.++|.+|++.|||..+. |+.|+|+||+++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999875
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.8e-33 Score=244.64 Aligned_cols=164 Identities=20% Similarity=0.253 Sum_probs=145.5
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 316 (437)
.+.++|||+|||+ .+|+++|+++|++||.|.+|+++.+. +|||||+|.+.++|..|++.++|..+.|+.+++.+
T Consensus 13 ~p~~tlfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHP-DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3556999999999 69999999999999999999998864 67999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC--ceE
Q 013749 317 SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQ 394 (437)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~ 394 (437)
+..... .. .....+|||+|||+.+|+++|+++|++||.|..++|+.+++ +||
T Consensus 92 ~~~~~~-------------------~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~ 145 (213)
T 4f02_A 92 SQRDPS-------------------LR-------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 145 (213)
T ss_dssp CCCCTH-------------------HH-------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE
T ss_pred cccccc-------------------cc-------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceE
Confidence 764421 00 01246899999999999999999999999999999998755 789
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 395 ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 395 afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
|||+|.+.++|.+|++.|||..|+|+.|+|+|++++..
T Consensus 146 ~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 146 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred EEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 99999999999999999999999999999999988653
No 8
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4.8e-33 Score=240.91 Aligned_cols=186 Identities=39% Similarity=0.649 Sum_probs=159.6
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCC-
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI- 322 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~- 322 (437)
+++|||+|||++.+++++|+++|++||.|.+|++..+.+|+|||+|.+.++|..|+..|+|..+.|+.|+|.|++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 3599999999723999999999999999999999998889999999999999999999999999999999999986543
Q ss_pred ------CCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccC-CeeEEEEEeeCCceEE
Q 013749 323 ------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGKKQA 395 (437)
Q Consensus 323 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~a 395 (437)
.......+|......++..+...+.....+|+++|+|+|||..+++++|+++|++|| .|..++++++ ++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~a 161 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMA 161 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEE
Confidence 122333445554445555444444344567889999999999999999999999999 9999999763 58999
Q ss_pred EEEecCHHHHHHHHHHhCCCccC-CcEEEEEeccCc
Q 013749 396 LVLFETEEQATEALVCKHASSLG-GSIIRISFSQLQ 430 (437)
Q Consensus 396 fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~s~~~ 430 (437)
||+|.+.++|.+|++.|||..+. |+.|+|+|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999875
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=225.10 Aligned_cols=158 Identities=21% Similarity=0.334 Sum_probs=142.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
++|||+|||. .+++++|+++|++||.|.++++..+. +|+|||+|.+.++|..|+..|+|..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDK-AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEET-TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCC-cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999998 69999999999999999999998765 579999999999999999999999999999999998755
Q ss_pred CCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEE
Q 013749 321 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQAL 396 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~af 396 (437)
... ...++++|+|+|||..+++++|+++|++||.|.++.++.+. .+|+||
T Consensus 80 ~~~--------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~af 133 (166)
T 3md3_A 80 QQS--------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGF 133 (166)
T ss_dssp CCC--------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEE
T ss_pred CCC--------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEE
Confidence 310 12345889999999999999999999999999999998763 278999
Q ss_pred EEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 397 VLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 397 V~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
|+|.+.++|.+|++.|||..++|+.|+|+||+.
T Consensus 134 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 134 VSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999974
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.9e-31 Score=224.57 Aligned_cols=156 Identities=20% Similarity=0.374 Sum_probs=141.4
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
++++|||+|||+ .+++++|+++|+.||.|.++++..+. +|+|||+|.+.++|..|++.|+|..+.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQ-DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 456999999999 69999999999999999999988753 589999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----Cce
Q 013749 318 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 393 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~ 393 (437)
.+.. ...++++|+|+|||..+++++|+++|++||.|..+.++.++ .+|
T Consensus 81 ~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 132 (168)
T 1b7f_A 81 RPGG----------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 132 (168)
T ss_dssp CCCS----------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEE
T ss_pred CCCc----------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcce
Confidence 7553 11235789999999999999999999999999999998764 268
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCC--cEEEEEec
Q 013749 394 QALVLFETEEQATEALVCKHASSLGG--SIIRISFS 427 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~s 427 (437)
+|||+|.+.++|.+|++.|||..+.| ++|+|+||
T Consensus 133 ~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 133 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999987 99999986
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=4.2e-31 Score=222.21 Aligned_cols=155 Identities=22% Similarity=0.371 Sum_probs=139.9
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
.++|||+|||+ .+++++|+++|+.||.|.++++..+. +|+|||+|.+.++|..|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQ-NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46999999999 69999999999999999999998864 4899999999999999999999999999999999987
Q ss_pred CCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceE
Q 013749 319 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQ 394 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~ 394 (437)
+... ..+.++|+|+|||..+++++|+++|++||.|..++++.++ .+|+
T Consensus 81 ~~~~----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~ 132 (167)
T 1fxl_A 81 PSSA----------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132 (167)
T ss_dssp CCCG----------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE
T ss_pred CCcc----------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccce
Confidence 5420 1234789999999999999999999999999999998764 2789
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCc--EEEEEec
Q 013749 395 ALVLFETEEQATEALVCKHASSLGGS--IIRISFS 427 (437)
Q Consensus 395 afV~f~~~~~A~~A~~~l~~~~~~g~--~l~v~~s 427 (437)
|||+|.+.++|.+|++.|||..+.|+ +|+|+||
T Consensus 133 afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 133 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999999996 4999886
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=7.4e-31 Score=230.46 Aligned_cols=173 Identities=19% Similarity=0.273 Sum_probs=146.2
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
.++|||+|||. .+++++|+++|+.||.|.+|+++.+. +|+|||+|.+.++|..|++.|+|..+.|+.|+|.++.
T Consensus 28 ~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYY-ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCT-TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCC-CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35999999999 69999999999999999999998753 7899999999999999999999999999999998876
Q ss_pred CCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceE
Q 013749 319 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQ 394 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~ 394 (437)
...... +..........+.++|||+|||..+++++|+++|++||.|..++++.+. .+|+
T Consensus 107 ~~~~~~-----------------~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 169 (216)
T 2qfj_A 107 NIGQAQ-----------------PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGY 169 (216)
T ss_dssp CCGGGH-----------------HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEE
T ss_pred Cccccc-----------------hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCce
Confidence 442100 0000000112346899999999999999999999999999999999763 2789
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccccc
Q 013749 395 ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 434 (437)
Q Consensus 395 afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~ 434 (437)
|||+|.+.++|.+|++.|||..|+|+.|+|.|++++....
T Consensus 170 afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 170 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred EEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999999999999999999999886544
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.4e-30 Score=225.03 Aligned_cols=170 Identities=12% Similarity=0.184 Sum_probs=139.8
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
..+.++|||+|||+ .+++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|..|+.. +|..+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSF-ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34557999999999 69999999999999999999998864 67999999999999999985 9999999999999
Q ss_pred EccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----C
Q 013749 316 FSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----G 391 (437)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~ 391 (437)
++........+ ....+.++|||+|||.++|+++|+++|++||.|..+.++.+. .
T Consensus 88 ~~~~~~~~~~~----------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 88 RAVSREDSQRP----------------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp ECCC---------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE
T ss_pred cccCccccccc----------------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCc
Confidence 98754311100 012345899999999999999999999999999999999764 2
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccccc
Q 013749 392 KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 435 (437)
Q Consensus 392 ~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~~ 435 (437)
+|||||+|.+.++|.+|+.. +|..++|+.|.|.|+.++.....
T Consensus 146 ~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred cceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 78999999999999999976 89999999999999998876543
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.8e-30 Score=218.31 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=140.0
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
++++|||+|||+++++++|+++|++||+|.+|.+++++ |||||+|.+.++|.+|++.+++. .+.|++|.|.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL--RLQTKTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC--ccCCceEEEEe
Confidence 57999999999999999999999999999999999875 89999999999999999999988 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee-----CCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~-----~~g~~afV~f~~~~~A~ 152 (437)
+.+...... ...|+|+|||..+++++|+++|++||.|..+.+... ++|+ |||+|.+.++|.
T Consensus 79 ~~~~~~~~~-------------~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~ 144 (167)
T 1fxl_A 79 ARPSSASIR-------------DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV-GFIRFDKRIEAE 144 (167)
T ss_dssp CCCCCGGGT-------------TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHH
T ss_pred cCCCcccCC-------------CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccce-EEEEeCCHHHHH
Confidence 876532211 123999999999999999999999999999887633 4687 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEe
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
+|++.|+|..+.|+.++|++.||
T Consensus 145 ~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 145 EAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCccCCCccceEEEeC
Confidence 99999999999988888888875
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5e-30 Score=222.00 Aligned_cols=178 Identities=13% Similarity=0.244 Sum_probs=146.1
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhcc----C-------CeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLY----G-------NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRL 312 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 312 (437)
+++|||+|||+ .+++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..+.|+.|
T Consensus 4 ~~~l~V~nLp~-~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 4 ARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp CCEEEEESCCT-TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-TTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred eeEEEEcCCCC-CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-CCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46999999999 69999999999999 5 6777777665 899999999999999999 799999999999
Q ss_pred EEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC--
Q 013749 313 EVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-- 390 (437)
Q Consensus 313 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-- 390 (437)
+|.++.......+....... ..+.... .....+.++|||+|||..+++++|+++|++||.|..+.++.++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSV-------YVPGVVS-TVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSC-------CCTTSSC-CCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EEeCCCCCCCCCCCcCCCcC-------CCCCCcc-CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 99998765432221111000 0000000 0122456899999999999999999999999999999998763
Q ss_pred C--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 391 G--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 391 ~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
+ +|+|||+|.+.++|.+|++.|||..++|+.|+|+||+++.-
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 2 78999999999999999999999999999999999998754
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.8e-30 Score=218.32 Aligned_cols=155 Identities=14% Similarity=0.267 Sum_probs=139.1
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhcc----C-------CeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLY----G-------NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 311 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 311 (437)
+.++|||+|||+ .+++++|+++|++| | .|.++.+..+ +|+|||+|.+.++|..|+ .|+|..+.|+.
T Consensus 3 ~~~~l~V~nLp~-~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCT-TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-TTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cccEEEEcCCCc-ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-CCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 346999999999 69999999999999 7 7888888776 899999999999999999 79999999999
Q ss_pred EEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC
Q 013749 312 LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391 (437)
Q Consensus 312 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~ 391 (437)
|+|.++.... ...+.++|+|+|||..+++++|+++|++||.|..+.++.++.
T Consensus 80 i~v~~~~~~~----------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 80 LKIRRPHDYQ----------------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp CEEECCSSCC----------------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eeecCCcccC----------------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 9999866432 012247899999999999999999999999999999987632
Q ss_pred ----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 392 ----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 392 ----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
+|+|||+|.+.++|.+|++.|||..++|+.|+|+||.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 7899999999999999999999999999999999973
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.9e-30 Score=234.08 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=146.4
Q ss_pred CCCccEEEEecCCCCCCCHHHHH----HHHhccCCeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLF----NLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 314 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~----~~F~~~G~v~~v~i~~~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 314 (437)
..++++|||+|||. .+++++|+ ++|++||.|.+|++.++. +|||||+|.+.++|..|++.|||..+.|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~-~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNE-KIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34567999999998 69999966 999999999999988743 799999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCccccccC---------------------------------CCC-----------C-----------C
Q 013749 315 NFSKHPNITQGADTHEYMNS---------------------------------NLN-----------R-----------F 339 (437)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~-----------~-----------~ 339 (437)
.|++............+... ... + .
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 99976553100000000000 000 0 0
Q ss_pred -------C---cch-------------hc-----cccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC
Q 013749 340 -------N---RNA-------------AK-----NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 391 (437)
Q Consensus 340 -------~---~~~-------------~~-----~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~ 391 (437)
. ... .. ......+++++|||+|||..+++++|+++|++||.|.++++++++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 0 000 00 000133467899999999999999999999999999999998643
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccC-CcEEEEEeccC
Q 013749 392 KKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQL 429 (437)
Q Consensus 392 ~~~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~s~~ 429 (437)
+|+|||+|.+.++|.+|++.|||..+. |+.|+|+||+.
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 689999999999999999999999999 99999999973
No 18
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.2e-30 Score=227.93 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=138.6
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.|+++|||+|||+++||++|+++|++||+|.+|+|++| +|||||+|.+.++|.+|++.+++. .+.|+.+++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~--~~~g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD--VIKGKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh--hcCCcccccc
Confidence 57789999999999999999999999999999999976 389999999999999999999998 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE---eeCCccEEEEEecChhHHHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF---QKSAGFQALIQYQLRPSAVV 153 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~---~~~~g~~afV~f~~~~~A~~ 153 (437)
++.......... . ..|||+|||.++++++|+++|+.||.|..+.+. +.++|+ |||+|.+.++|.+
T Consensus 91 ~~~~~~~~~~~~---------~--~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~-~fV~f~~~~~a~~ 158 (213)
T 4f02_A 91 WSQRDPSLRKSG---------V--GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAER 158 (213)
T ss_dssp ECCCCTHHHHHC---------T--TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE-EEEEESSHHHHHH
T ss_pred cccccccccccc---------c--ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceE-EEEEeCCHHHHHH
Confidence 987643322211 1 139999999999999999999999999998876 335687 9999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEEecCC
Q 013749 154 ARSSLQGRNIYDGCCQLDIQFSNLD 178 (437)
Q Consensus 154 A~~~l~~~~~~~~~~~l~~~~~~~~ 178 (437)
|++.|+|..+.| .+|+|.+++..
T Consensus 159 Ai~~lng~~~~g--~~i~V~~a~~~ 181 (213)
T 4f02_A 159 AIEKMNGMLLND--RKVFVGRFKSR 181 (213)
T ss_dssp HHHHHTTCEETT--EECEEEECCCH
T ss_pred HHHHhCCCEECC--EEEEEEEcCCC
Confidence 999999999876 57788888653
No 19
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.9e-30 Score=217.35 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=139.0
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
|+++|||+|||+++++++|+++|++||+|.+|.+++++ |||||+|.+.++|.+|++.+++. .+.|++|.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI--TVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC--EeCCcEEEEEe
Confidence 68999999999999999999999999999999998763 89999999999999999999988 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee-----CCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~-----~~g~~afV~f~~~~~A~ 152 (437)
+.+..... ....|+|+|||.++++++|+++|++||.|..+.+... ++|+ |||+|.+.++|.
T Consensus 80 ~~~~~~~~-------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~ 145 (168)
T 1b7f_A 80 ARPGGESI-------------KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQ 145 (168)
T ss_dssp CCCCSSTT-------------TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHH
T ss_pred cCCCcccC-------------CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceE-EEEEECCHHHHH
Confidence 87653211 1124999999999999999999999999999887633 3577 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEe
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
+|++.|+|..+.|+..+|+|.||
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999887788888775
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.5e-29 Score=214.42 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=137.2
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-------CCeEEEEeCCHHHHHHHHHHhcCceeC---CcEE
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-------PDHALVQMGDGFQAELAVHFLKGALLF---GKRL 312 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-------~g~~fV~f~~~~~A~~A~~~l~g~~~~---g~~l 312 (437)
+.++|||+|||+ .+++++|+++|++||.|.+++++.+. +|+|||+|.+.++|..|++.|+|..+. ++.+
T Consensus 2 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPR-TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 456999999999 69999999999999999999998753 579999999999999999999998875 5678
Q ss_pred EEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-
Q 013749 313 EVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG- 391 (437)
Q Consensus 313 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~- 391 (437)
.+.++..... ...+.++|||+|||..+|+++|+++|++||.|.++.++.++.
T Consensus 81 ~~~~~~~~~~---------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g 133 (175)
T 3nmr_A 81 QMKPADSEKN---------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG 133 (175)
T ss_dssp EEEECGGGCC---------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred EEcccccccc---------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCC
Confidence 7777653320 112357899999999999999999999999999999987643
Q ss_pred --ceEEEEEecCHHHHHHHHHHhCCCccC---CcEEEEEecc
Q 013749 392 --KKQALVLFETEEQATEALVCKHASSLG---GSIIRISFSQ 428 (437)
Q Consensus 392 --~~~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~~s~ 428 (437)
+|+|||+|.+.++|.+|++.|||..+. |++|+|.||.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 134 LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 789999999999999999999998876 4999999984
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=9.2e-31 Score=220.17 Aligned_cols=157 Identities=16% Similarity=0.310 Sum_probs=138.8
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
++++|||+|||. .+++++|+++|++||.|.+++++.+. +|+|||+|.+.++|..|+. ++..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNW-DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCT-TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 356999999999 69999999999999999999998763 6899999999999999999 467899999999886
Q ss_pred cCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----Cce
Q 013749 318 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 393 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~ 393 (437)
.... .. .+.++|||+|||.++++++|+++|++||.|.++.++.++ .+|
T Consensus 79 ~~~~---------------------~~-------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 79 IPRD---------------------EQ-------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp CCHH---------------------HH-------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSE
T ss_pred cchh---------------------hc-------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccce
Confidence 5331 00 124789999999999999999999999999999998653 378
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 394 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 394 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
+|||+|.+.++|.+|++ +||..+.|+.|+|.||++++
T Consensus 131 ~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp EEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred EEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 99999999999999997 99999999999999999864
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.5e-30 Score=218.32 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=136.9
Q ss_pred CCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEec----CCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR----NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 240 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~----~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
...+.++|||+|||. .+++++|+++|+.||.+..+.+.. ..+|+|||+|.+.++|..|++ |+|..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNP-NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCT-TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 345667999999999 699999999999998754421111 238999999999999999995 99999999999999
Q ss_pred EccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEE
Q 013749 316 FSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 395 (437)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~a 395 (437)
++...... ...+.++|||+|||..+++++|+++|++||.|..+ ......+|+|
T Consensus 87 ~~~~~~~~--------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~a 139 (175)
T 1fje_B 87 KPKGRDSK--------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIA 139 (175)
T ss_dssp CCCCSSCS--------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEE
T ss_pred cCCCcccc--------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEE
Confidence 98754210 11235889999999999999999999999999877 2222458999
Q ss_pred EEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 396 LVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 396 fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
||+|.+.++|.+|++.|||..+.|+.|+|+||+++.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 140 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 999999999999999999999999999999998763
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.9e-29 Score=217.71 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=136.8
Q ss_pred CCceEEEEcCCC-ccCcHHHHHHhccCCccceEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 3 EPSKVIHVRNVG-HEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 3 ~~s~~l~V~~Lp-~~~te~~l~~~f~~~G~i~~v~i~~~-~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
.++++|||+||| ..+|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.||+. .+.|++|+|.|++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN--FMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC--EECCceEEEEEccC
Confidence 578999999999 79999999999999999999999987 699999999999999999999998 99999999999975
Q ss_pred ccccccc------------c--CC-CC-----------CCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCce--eEEEE
Q 013749 81 QELTTME------------Q--NA-QG-----------RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFV--EKIVT 132 (437)
Q Consensus 81 ~~~~~~~------------~--~~-~~-----------~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i--~~i~~ 132 (437)
+...... . .. .. ....++. .|||+|||+++++++|+++|++||.| .++.+
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~--~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSN--VLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCS--EEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcc--eEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 4321100 0 00 00 0012223 49999999999999999999999999 78887
Q ss_pred Ee---eCCccEEEEEecChhHHHHHHHHcCCCCCCCC--CceEEEEE
Q 013749 133 FQ---KSAGFQALIQYQLRPSAVVARSSLQGRNIYDG--CCQLDIQF 174 (437)
Q Consensus 133 ~~---~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~--~~~l~~~~ 174 (437)
.. ..+|+ |||+|.+.++|.+|+..|||..+.+. ..++.+.+
T Consensus 158 ~~~~~~~~g~-gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 158 FSGKSERSSS-GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSCCSSSSEE-EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EcCCCCCceE-EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 63 33577 99999999999999999999988765 34455544
No 24
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=8.6e-29 Score=223.11 Aligned_cols=156 Identities=20% Similarity=0.298 Sum_probs=141.2
Q ss_pred CCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 013749 240 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 319 (437)
Q Consensus 240 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 319 (437)
...+.++|||+|||+ .+|+++|+++|+.||.|..|.+.++ +|+|||+|.+.++|..|+..|+|..+.|+.|+|.|+..
T Consensus 18 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPT-DITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCT-TCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCC-CCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345667999999999 6999999999999999999999877 89999999999999999999999999999999999763
Q ss_pred CCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEE
Q 013749 320 PNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQAL 396 (437)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~af 396 (437)
+++|||+|||..+|+++|+++|++||.|..+.++.+.. +|+||
T Consensus 96 ----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~af 141 (261)
T 3sde_A 96 ----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 141 (261)
T ss_dssp ----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEE
T ss_pred ----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEE
Confidence 26799999999999999999999999999999987733 78999
Q ss_pred EEecCHHHHHHHHHHhCC-CccC---CcEEEEEeccCcc
Q 013749 397 VLFETEEQATEALVCKHA-SSLG---GSIIRISFSQLQS 431 (437)
Q Consensus 397 V~f~~~~~A~~A~~~l~~-~~~~---g~~l~v~~s~~~~ 431 (437)
|+|.+.++|.+|+..||+ ..+. |++|.|.+++...
T Consensus 142 V~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 142 VEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999999999999955 4444 9999999998764
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-29 Score=210.39 Aligned_cols=155 Identities=21% Similarity=0.277 Sum_probs=137.1
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~-----~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
|+|||+|||+++|+++|+++|++||+|.+|.+++++ |||||+|.+.++|.+|++.+++. .+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK--QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC--ccCCCeeEEEEcCC
Confidence 689999999999999999999999999999998764 89999999999999999999998 89999999999866
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHHHHHH
Q 013749 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVAR 155 (437)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A~~A~ 155 (437)
.... .......|+|+|||.++++++|+++|++||.|..+.+. +.++|+ |||+|.+.++|.+|+
T Consensus 79 ~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 79 SQQS-----------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAM 146 (166)
T ss_dssp CCCC-----------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHH
T ss_pred CCCC-----------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHH
Confidence 4321 12234459999999999999999999999999998876 345677 999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEec
Q 013749 156 SSLQGRNIYDGCCQLDIQFSN 176 (437)
Q Consensus 156 ~~l~~~~~~~~~~~l~~~~~~ 176 (437)
+.|+|..+.| .+|+|.|++
T Consensus 147 ~~l~g~~~~g--~~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDLNG--RPLRINWAA 165 (166)
T ss_dssp HHHTTCEETT--EECEEEESC
T ss_pred HHhCCCccCC--cEEEEEecC
Confidence 9999999866 677888875
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=7.9e-29 Score=218.93 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=143.4
Q ss_pred CCCceEEEEcCCCc-cCcHHHHHHhccCCccceEEEEEccC-CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 2 TEPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAK-NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~-~~te~~l~~~f~~~G~i~~v~i~~~~-~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
.+++++|||+|||+ ++++++|+++|++||.|.+|++++++ |||||+|.+.++|.+|++.+++. .+.|+.|.|.|+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTC--BCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEec
Confidence 35789999999999 99999999999999999999999985 99999999999999999999998 8999999999987
Q ss_pred cccccccccCC---------------CCC-------CCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCC-ceeEEEEEeeC
Q 013749 80 HQELTTMEQNA---------------QGR-------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHG-FVEKIVTFQKS 136 (437)
Q Consensus 80 ~~~~~~~~~~~---------------~~~-------~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~i~~~~~~ 136 (437)
........... +.. ........+|||+|||.++++++|+++|++|| .|..+.+..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 64221111000 000 00011234599999999999999999999999 99999987777
Q ss_pred CccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 137 AGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 137 ~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
+|+ |||+|.+.++|.+|++.|+|..+.+ ..+|++.|++.
T Consensus 189 ~g~-afV~f~~~~~A~~Ai~~l~g~~~~~-g~~l~v~~a~~ 227 (229)
T 2adc_A 189 RKM-ALIQMGSVEEAVQALIDLHNHDLGE-NHHLRVSFSKS 227 (229)
T ss_dssp TTC-EEEEESSHHHHHHHHHHHTTCBSSS-SCBCEEEECSS
T ss_pred CcE-EEEEECCHHHHHHHHHHHCCCccCC-CCeEEEEEecC
Confidence 898 9999999999999999999999861 35789988864
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=9.8e-29 Score=209.41 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=134.0
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc--------CCeEEEEecChhHHHHHHHhhccCCCc-ccCeEEE
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--------KNQALLQMQDVPSAINALQFYTNVQPT-IRGRNVY 74 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~--------~~~afV~F~~~~~A~~a~~~~~~~~~~-~~g~~l~ 74 (437)
.+++|||+|||+++|+++|+++|++||+|.+|+++++ +|||||+|.+.++|.+|++.+++..+. -.++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5799999999999999999999999999999999854 489999999999999999999987321 1267788
Q ss_pred EEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee----CCccEEEEEecChhH
Q 013749 75 VQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK----SAGFQALIQYQLRPS 150 (437)
Q Consensus 75 v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~----~~g~~afV~f~~~~~ 150 (437)
+.++....... .....|||+|||.++++++|+++|++||.|..+.+... ++|+ |||+|.+.++
T Consensus 82 ~~~~~~~~~~~------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~-afV~f~~~~~ 148 (175)
T 3nmr_A 82 MKPADSEKNNA------------VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGC-AFVTFTTRAM 148 (175)
T ss_dssp EEECGGGCCSC------------GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSHHH
T ss_pred Ecccccccccc------------CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEE-EEEEECCHHH
Confidence 88766543211 11224999999999999999999999999999988733 4677 9999999999
Q ss_pred HHHHHHHcCCCCCCCC-CceEEEEEe
Q 013749 151 AVVARSSLQGRNIYDG-CCQLDIQFS 175 (437)
Q Consensus 151 A~~A~~~l~~~~~~~~-~~~l~~~~~ 175 (437)
|.+|++.|+|..+.++ ..+|+|.|+
T Consensus 149 A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 149 AQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999999999888765 477888876
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=9.8e-29 Score=208.78 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=135.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCC----c-------cceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPF----G-------VITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~ 71 (437)
+++++|||+|||+++|+++|+++|++| | .|.++.+.+++|||||+|.+.++|.+|+ .+++. .+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~--~~~g~ 78 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI--IFQGQ 78 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTC--EETTE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCc--EecCc
Confidence 478999999999999999999999999 7 8889999999999999999999999999 78888 89999
Q ss_pred EEEEEecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee-----CCccEEEEEec
Q 013749 72 NVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGFQALIQYQ 146 (437)
Q Consensus 72 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~-----~~g~~afV~f~ 146 (437)
+|.|.++........ ..+|+|+|||.++++++|+++|++||.|..+.+... ++|+ |||+|.
T Consensus 79 ~i~v~~~~~~~~~~~-------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~ 144 (172)
T 2g4b_A 79 SLKIRRPHDYQPLPG-------------AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYV 144 (172)
T ss_dssp ECEEECCSSCCCCTT-------------TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE-EEEEES
T ss_pred eeeecCCcccCCCCC-------------CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE-EEEEeC
Confidence 999998665422111 123999999999999999999999999999988633 3677 999999
Q ss_pred ChhHHHHHHHHcCCCCCCCCCceEEEEEe
Q 013749 147 LRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (437)
Q Consensus 147 ~~~~A~~A~~~l~~~~~~~~~~~l~~~~~ 175 (437)
+.++|.+|++.|+|..+.| .+|.|.||
T Consensus 145 ~~~~A~~A~~~l~g~~~~g--~~l~V~~A 171 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLGD--KKLLVQRA 171 (172)
T ss_dssp STTHHHHHHHHHTTCEETT--EECEEEEC
T ss_pred CHHHHHHHHHHcCCCEECC--eEEEEEeC
Confidence 9999999999999999976 56677776
No 29
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=7.6e-29 Score=208.40 Aligned_cols=154 Identities=12% Similarity=0.216 Sum_probs=133.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++. .. .+.|+.|.+.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~--~~~g~~i~v~ 76 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH--ILDGKVIDPK 76 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC--EETTEECCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc--ccCCeEcccc
Confidence 47899999999999999999999999999999999976 38999999999999999994 23 7999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSA 151 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A 151 (437)
++.+..... ....|||+|||.++++++|+++|++||.|..+.+. +.++|+ |||+|.+.++|
T Consensus 77 ~~~~~~~~~-------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a 142 (167)
T 2cjk_A 77 RAIPRDEQD-------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGF-GFVTYDSADAV 142 (167)
T ss_dssp ECCCHHHHH-------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEE-EEEEESSHHHH
T ss_pred cccchhhcc-------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceE-EEEEECCHHHH
Confidence 887653322 12349999999999999999999999999998875 456787 99999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 152 VVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 152 ~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
.+|++ +++..+.| .+|+|.|+.+
T Consensus 143 ~~A~~-~~~~~~~g--~~i~V~~a~p 165 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKD--RKIEIKRAEP 165 (167)
T ss_dssp HHHHH-CSEECSSS--SCEEEEECCC
T ss_pred HHHHh-CCCEEeCC--eEEEEeecCC
Confidence 99997 88888876 5678888864
No 30
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=7e-29 Score=217.86 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=136.8
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .+.|+.|.|.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~ 104 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVGR 104 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEEC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEec
Confidence 5689999999999999999999999999999999865 599999999999999999999988 89999999998
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEe-----eCCccEEEEEecChhHHH
Q 013749 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAV 152 (437)
Q Consensus 78 s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afV~f~~~~~A~ 152 (437)
+.............. .......+|||+|||.++++++|+++|++||.|..+.+.. +++|+ |||+|.+.++|.
T Consensus 105 ~~~~~~~~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~ 181 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLA--EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGY-GFIEYEKAQSSQ 181 (216)
T ss_dssp CSCCGGGHHHHHHHH--HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHH
T ss_pred CCCccccchhhhhhh--cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCce-EEEEecCHHHHH
Confidence 765432211100000 0001223499999999999999999999999999998863 34787 999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEEec
Q 013749 153 VARSSLQGRNIYDGCCQLDIQFSN 176 (437)
Q Consensus 153 ~A~~~l~~~~~~~~~~~l~~~~~~ 176 (437)
+|++.|+|..+.| ..|+|.|+.
T Consensus 182 ~A~~~l~g~~~~g--~~i~V~~a~ 203 (216)
T 2qfj_A 182 DAVSSMNLFDLGG--QYLRVGKAV 203 (216)
T ss_dssp HHHHHHTTCBCSS--SBCEEEECS
T ss_pred HHHHHccCCEeCC--cEEEEEEec
Confidence 9999999999876 467888876
No 31
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.4e-28 Score=211.33 Aligned_cols=170 Identities=24% Similarity=0.317 Sum_probs=141.6
Q ss_pred CceEEEEcCCCc-cCcHHHHHHhccCCccceEEEEEccC-CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 4 PSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAK-NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 4 ~s~~l~V~~Lp~-~~te~~l~~~f~~~G~i~~v~i~~~~-~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.+++|||+|||+ ++++++|+++|++||.|.+|++++++ |||||+|.+.++|.+|++.+++. .+.|++|.|.|+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTC--CCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--eecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999999884 99999999999999999999998 899999999998764
Q ss_pred cccccccCC--------------------CC--CCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCC-ceeEEEEEeeCCc
Q 013749 82 ELTTMEQNA--------------------QG--RGDEPNRILLVTIHHMLYPITVEVLHQVFSPHG-FVEKIVTFQKSAG 138 (437)
Q Consensus 82 ~~~~~~~~~--------------------~~--~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~i~~~~~~~g 138 (437)
......... .. .........+|+|+|||..+++++|+++|++|| .|..+.+....+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g 159 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 159 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSS
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCc
Confidence 321111000 00 000112244599999999999999999999999 9999998777789
Q ss_pred cEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 139 FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 139 ~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
+ |||+|.+.++|.+|++.|+|..+.+ ..+|++.|+++
T Consensus 160 ~-afV~f~~~~~A~~A~~~l~g~~~~~-g~~l~v~~a~~ 196 (198)
T 1qm9_A 160 M-ALIQMGSVEEAVQALIDLHNHDLGE-NHHLRVSFSKS 196 (198)
T ss_dssp C-EEEECSSHHHHHHHHHHHTSSCCSS-CCSCCEEEECC
T ss_pred E-EEEEeCCHHHHHHHHHHhcCCccCC-CCeEEEEeecc
Confidence 8 9999999999999999999999861 35678888863
No 32
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=4.5e-28 Score=209.28 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=131.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++. ++. .+.|+.|.|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~--~~~g~~l~v~ 87 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH--KVDGRVVEPK 87 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC--EECCEEeeee
Confidence 46799999999999999999999999999999999976 47999999999999999986 555 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE-----eeCCccEEEEEecChhHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSA 151 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afV~f~~~~~A 151 (437)
++......... ........|||+|||.++++++|+++|+.||.|..+.+. +.++|+ |||+|.+.++|
T Consensus 88 ~~~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A 159 (196)
T 1l3k_A 88 RAVSREDSQRP-------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSV 159 (196)
T ss_dssp ECCC------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHH
T ss_pred cccCccccccc-------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccce-EEEEECCHHHH
Confidence 98765332111 111222459999999999999999999999999998876 335787 99999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 152 VVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 152 ~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
.+|+.. ++..+.| ..|.|.++..
T Consensus 160 ~~A~~~-~~~~~~G--~~i~v~~a~~ 182 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNG--HNCEVRKALS 182 (196)
T ss_dssp HHHHHC-SCCEETT--EECEEEECC-
T ss_pred HHHHHh-CCcEECC--EEEEEEecCC
Confidence 999976 7877776 4678888764
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=7.1e-28 Score=208.41 Aligned_cols=169 Identities=15% Similarity=0.232 Sum_probs=138.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCC----c-------cceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPF----G-------VITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~ 71 (437)
..+++|||+|||+++|+++|+++|++| | .|.++.+.+++|||||+|.+.++|.+|+ .+++. .+.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~--~~~g~ 78 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI--IFQGQ 78 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTE--EETTE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCC--EEcCc
Confidence 468999999999999999999999999 5 7888888899999999999999999999 78887 89999
Q ss_pred EEEEEecccccccccccCCC-------CCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee-----CCcc
Q 013749 72 NVYVQFSSHQELTTMEQNAQ-------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGF 139 (437)
Q Consensus 72 ~l~v~~s~~~~~~~~~~~~~-------~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~-----~~g~ 139 (437)
+|.|.++............. .....+....+|||+|||.++++++|+++|++||.|..+.+... ++|+
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 99999987643221111000 01112234456999999999999999999999999999988643 3677
Q ss_pred EEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEEecC
Q 013749 140 QALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 140 ~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~~~~ 177 (437)
|||+|.+.++|.+|++.|+|..+.| ..|++.+++.
T Consensus 159 -afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~ 193 (198)
T 2yh0_A 159 -AFCEYVDINVTDQAIAGLNGMQLGD--KKLLVQRASV 193 (198)
T ss_dssp -EEEEESSSSHHHHHHHHHTTCEETT--EECEEEESCC
T ss_pred -EEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCC
Confidence 9999999999999999999999866 5778888864
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=8.4e-27 Score=213.12 Aligned_cols=214 Identities=21% Similarity=0.292 Sum_probs=143.2
Q ss_pred EEEEEeCcCCCCCHHHHH----HhcCCCCceeEEEEE--eeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEE
Q 013749 101 LLVTIHHMLYPITVEVLH----QVFSPHGFVEKIVTF--QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (437)
Q Consensus 101 ~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~i~~~--~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~ 174 (437)
.+|||+|||.++++++|+ ++|+.||.|.+|.+. ++++|+ |||+|.+.++|.+|++.|+|..+.+ ..|+|.|
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 86 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYD--KPMRIQY 86 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCC--cEEEEEE
Confidence 349999999999999966 999999999998875 567888 9999999999999999999999877 5778888
Q ss_pred ecCCcceeeecCCc--ccCcc--------------CCCCC------------CC--------CCCCCCCCCCCCCC-CCC
Q 013749 175 SNLDELQVNYNNER--SRDFT--------------NPNLP------------AE--------QKGRPSQSGYSEAG-VAF 217 (437)
Q Consensus 175 ~~~~~~~~~~~~~~--~~~~~--------------~~~~~------------~~--------~~~~~~~~~~~~~~-~~~ 217 (437)
++............ .+... ....+ .. .......+..+..+ +..
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 86543211100000 00000 00000 00 00000000000000 000
Q ss_pred cccchhh-hhhh--h---------cCCCCC--CCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCC
Q 013749 218 PQMANAA-AIAA--A---------FGGGLP--PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPD 283 (437)
Q Consensus 218 ~~~~~~~-~~~~--~---------~~~~~~--~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g 283 (437)
|.++.+. .... + .....+ .......++++|||+|||. .+++++|+++|++||.|.+|++..+++|
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~i~~v~~~~~~~g 245 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE-ETNELMLSMLFNQFPGFKEVRLVPGRHD 245 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCC-cCCHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 0000000 0000 0 000000 0112345668999999998 6999999999999999999999988779
Q ss_pred eEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEEcc
Q 013749 284 HALVQMGDGFQAELAVHFLKGALLF-GKRLEVNFSK 318 (437)
Q Consensus 284 ~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 318 (437)
+|||+|.+.++|.+|+..|||..+. |+.|+|.|++
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999999999999 9999999986
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.7e-27 Score=201.79 Aligned_cols=159 Identities=13% Similarity=0.156 Sum_probs=133.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceE-----EEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITK-----LVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~-----v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
..++++|||+|||.++|+++|+++|++||.|.. ...-+.+|||||+|.+.++|.+|++ +++. .+.|++|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l~v~ 86 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL--KVFGNEIKLE 86 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGE--EETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCC--EeCCeEEEEe
Confidence 457899999999999999999999999987544 3333457999999999999999995 9988 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHH
Q 013749 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156 (437)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~ 156 (437)
++....... ......|||+|||.++++++|+++|++||.|..+...+.++|+ |||+|.+.++|.+|++
T Consensus 87 ~~~~~~~~~-----------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 87 KPKGRDSKK-----------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCCSSCST-----------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSE-EEEECSSHHHHHHHHH
T ss_pred cCCCccccc-----------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceE-EEEEECCHHHHHHHHH
Confidence 987653211 1122349999999999999999999999999877333667888 9999999999999999
Q ss_pred HcCCCCCCCCCceEEEEEecC
Q 013749 157 SLQGRNIYDGCCQLDIQFSNL 177 (437)
Q Consensus 157 ~l~~~~~~~~~~~l~~~~~~~ 177 (437)
.|+|..+.| ..|+|.|+++
T Consensus 155 ~l~g~~~~g--~~i~v~~a~~ 173 (175)
T 1fje_B 155 EKQGAEIDG--RSVSLYYTGE 173 (175)
T ss_dssp HHTEEEETT--EEEEEEECSS
T ss_pred HhCCCEECC--eEEEEEecCC
Confidence 999988876 5789988864
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=4.1e-27 Score=212.14 Aligned_cols=153 Identities=19% Similarity=0.301 Sum_probs=134.6
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
.++++|||+|||+++|+++|+++|++||.|.+|.+.+++|||||+|.+.++|.+|+..+++. .+.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~a~~~- 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGT--ILKSRPLRIRFATHG- 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCS-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCc--EECCceeEeeecccC-
Confidence 46689999999999999999999999999999999999999999999999999999999998 899999999997642
Q ss_pred ccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEE----eeCCccEEEEEecChhHHHHHHHHc
Q 013749 83 LTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQALIQYQLRPSAVVARSSL 158 (437)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~----~~~~g~~afV~f~~~~~A~~A~~~l 158 (437)
. +|||+|||..+++++|+++|+.||.|..+.+. ++++|+ |||+|.+.++|.+|+..|
T Consensus 97 ----------------~--~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 97 ----------------A--ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGK-GFVEFAAKPPARKALERC 157 (261)
T ss_dssp ----------------S--EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEE-EEEEESSHHHHHHHHHHH
T ss_pred ----------------C--cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcE-EEEEeCCHHHHHHHHHHh
Confidence 1 39999999999999999999999999998876 335677 999999999999999999
Q ss_pred CCCCCC--CCCceEEEEEecC
Q 013749 159 QGRNIY--DGCCQLDIQFSNL 177 (437)
Q Consensus 159 ~~~~~~--~~~~~l~~~~~~~ 177 (437)
++..+. +...++.+.++..
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCC
T ss_pred cCCeEEecCCCceEEEeeccc
Confidence 544432 2235678877763
No 37
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.88 E-value=2e-22 Score=157.29 Aligned_cols=107 Identities=48% Similarity=0.853 Sum_probs=100.1
Q ss_pred CCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEEE
Q 013749 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (437)
Q Consensus 95 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~~ 174 (437)
..++++++|||+||++.+|+++|+++|++||.|.+|.+..+++|++|||+|.+.++|..|++.|+|..+++++++|+|+|
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 45789999999999999999999999999999999999888889889999999999999999999999999999999999
Q ss_pred ecCCcceeeecCCcccCccCCCCCCCC
Q 013749 175 SNLDELQVNYNNERSRDFTNPNLPAEQ 201 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
+++..++++.+++++|||+.|.+|..+
T Consensus 103 ak~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 103 SKLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp CSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred cCCCceeEEecCCCcccCCCCCCCCCC
Confidence 999999999999999999999987543
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=2.8e-22 Score=164.58 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=111.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHh-cCceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEec
Q 013749 282 PDHALVQMGDGFQAELAVHFL-KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 360 (437)
Q Consensus 282 ~g~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 360 (437)
+|+++|+|.+.++|.+|++.+ ||..+.| .+.+.++............. ..........+.++|||+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~V~ 79 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH------------HHHMHRDSCPLDCKVYVG 79 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC------------CCCSCSSSSTTSCEEEEE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc------------cccccccCCCCCCEEEEe
Confidence 789999999999999999999 9999999 99999876532110000000 000001133456899999
Q ss_pred CCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 361 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 361 nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
|||+++|+++|+++|++||.|.+++++.+ .+|||||+|.+.++|.+|++.|||..+.|++|+|+|++++
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999864 5899999999999999999999999999999999999876
No 39
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=148.56 Aligned_cols=82 Identities=34% Similarity=0.558 Sum_probs=78.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.+|+++|||+|||.++||++|+++|++||.|.+|+++++||||||+|.+.++|.+|++.+++.++.++|++|+|+||+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 57999999999999999999999999999999999999999999999999999999999999877799999999999887
Q ss_pred cc
Q 013749 82 EL 83 (437)
Q Consensus 82 ~~ 83 (437)
++
T Consensus 98 ~l 99 (100)
T 3r27_A 98 KI 99 (100)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=9.1e-22 Score=163.17 Aligned_cols=137 Identities=10% Similarity=0.100 Sum_probs=103.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecC
Q 013749 282 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLST 361 (437)
Q Consensus 282 ~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 361 (437)
+|+|||+|.+.++|.+|+..+++....+....+............. . .........+.++|||+|
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS-------H--------HHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC-------C--------CSSCCCCCCBCCEEEEES
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc-------c--------ccccccCCCCCCEEEEeC
Confidence 7999999999999999999988754433333333211110000000 0 000001223468999999
Q ss_pred CCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 362 LPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 362 lp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
||+++++++|+++|++||.|..++++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|+||+++.-+
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999998763 3789999999999999999999999999999999999986443
No 41
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=147.09 Aligned_cols=104 Identities=39% Similarity=0.721 Sum_probs=97.0
Q ss_pred CCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEeeCCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEE
Q 013749 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (437)
Q Consensus 94 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~ 173 (437)
...++++++|||+||++.+++++|+++|++||.|.+|.+..+ .|++|||+|.+.++|..|++.|+|..|.+++++|+|.
T Consensus 19 ~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 19 PSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 346789999999999999999999999999999999998766 4856999999999999999999999999988899999
Q ss_pred EecCCcceeeecCCcccCccCCCCC
Q 013749 174 FSNLDELQVNYNNERSRDFTNPNLP 198 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
++++..+.++.+++++|||+.|.+|
T Consensus 98 ~Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 98 YARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred EecCCcceeecCCCCCCCCCCCCCC
Confidence 9999999999999999999999877
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.1e-21 Score=151.32 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
..+.+|||+|||+++||++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++. .++|++|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~--~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEC
Confidence 45789999999999999999999999999999999987 589999999999999999999998 999999999998
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHH
Q 013749 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEV 116 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~ 116 (437)
.++........ ........|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~-----~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELG-----ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC---------------------------------
T ss_pred CCccccccccc-----cccCCCCceEeCCCCCCccccc
Confidence 76532221111 1112223489999999999863
No 43
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-21 Score=146.63 Aligned_cols=87 Identities=40% Similarity=0.754 Sum_probs=79.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
++++++|||+|||+++||+||+++|++||.|.+|+|+++||||||+|.+.++|.+|++.+++.+..+.|++|+|.|++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 46889999999999999999999999999999999999999999999999999999998876555899999999999987
Q ss_pred ccccccc
Q 013749 82 ELTTMEQ 88 (437)
Q Consensus 82 ~~~~~~~ 88 (437)
.......
T Consensus 93 ~~~~~~~ 99 (105)
T 1sjq_A 93 ELKTDSS 99 (105)
T ss_dssp SCCCTTC
T ss_pred CCCcccc
Confidence 6655443
No 44
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.4e-21 Score=143.65 Aligned_cols=86 Identities=37% Similarity=0.748 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.+|+++|||+|||.+++|++|+++|++||.|.+|.++++||||||+|.+.++|.+|++.+++.+..+.|++|+|.|+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 47899999999999999999999999999999999999999999999999999999998876656899999999999987
Q ss_pred cccccc
Q 013749 82 ELTTME 87 (437)
Q Consensus 82 ~~~~~~ 87 (437)
......
T Consensus 92 ~~~~~~ 97 (101)
T 2cq1_A 92 ELKTSG 97 (101)
T ss_dssp SCCCCC
T ss_pred cCcCCC
Confidence 766543
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=141.51 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=75.6
Q ss_pred cCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCc--cCCcEEEEEec
Q 013749 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS--LGGSIIRISFS 427 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~--~~g~~l~v~~s 427 (437)
..+|+++|||+|||+++|+++|+++|++||.|.++++++ +||+|||+|.+.++|.+|++.||+.. +.|++|+|+||
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 457889999999999999999999999999999999984 68999999999999999999999986 77999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+++.+
T Consensus 95 ~~k~l 99 (100)
T 3r27_A 95 TSQKI 99 (100)
T ss_dssp SCSCC
T ss_pred ccccc
Confidence 99875
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4e-21 Score=148.20 Aligned_cols=88 Identities=40% Similarity=0.742 Sum_probs=80.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.+|+++|||+|||+++||+||+++|++||.|.+|+|+++||||||+|.+.++|.+|++.+++.+..+.|++|+|.|+.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 46899999999999999999999999999999999999999999999999999999999886555899999999999988
Q ss_pred cccccccC
Q 013749 82 ELTTMEQN 89 (437)
Q Consensus 82 ~~~~~~~~ 89 (437)
.......+
T Consensus 108 ~~~~~~~~ 115 (119)
T 2ad9_A 108 ELKTDSSP 115 (119)
T ss_dssp SCCCCCCT
T ss_pred CCCccccc
Confidence 77655544
No 47
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-21 Score=144.11 Aligned_cols=80 Identities=30% Similarity=0.526 Sum_probs=75.9
Q ss_pred CCCceEEEEcCCCc-cCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
+.|+++|||+|||+ ++||+||+++|++||.|.+|.|+++++||||+|.+.++|.+|++.|++.+..+.|++|+|.|+..
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 57899999999999 99999999999999999999999999999999999999999999999876679999999999985
Q ss_pred c
Q 013749 81 Q 81 (437)
Q Consensus 81 ~ 81 (437)
.
T Consensus 92 ~ 92 (102)
T 1x4d_A 92 Y 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=142.81 Aligned_cols=85 Identities=28% Similarity=0.516 Sum_probs=78.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.+|+++|||+|||.+++|++|+++|++||.|.+|.++++||||||+|.+.++|.+|++.+++.+..++|++|+|.|+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 46899999999999999999999999999999999999999999999999999999999988766799999999999887
Q ss_pred ccccc
Q 013749 82 ELTTM 86 (437)
Q Consensus 82 ~~~~~ 86 (437)
....+
T Consensus 92 ~~~~~ 96 (104)
T 1wex_A 92 RITRP 96 (104)
T ss_dssp SCCCS
T ss_pred cccCC
Confidence 66543
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.1e-20 Score=147.28 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=71.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 321 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 321 (437)
++|||+|||+ .+++++|+++|++||.|.+|+++.+. +|||||+|.+.++|..|++.|+|..+.|+.|+|.+++...
T Consensus 6 ~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 6 GNIFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CEEEECCCCC-CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 4899999999 69999999999999999999998865 6899999999999999999999999999999999987653
Q ss_pred CCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCCCCCHH
Q 013749 322 ITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 369 (437)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~ 369 (437)
...... .. ......+|||+|||+++|++
T Consensus 85 ~~~~~~---------------~~-----~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 EREAEL---------------GA-----RAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp C-----------------------------------------------
T ss_pred cccccc---------------cc-----ccCCCCceEeCCCCCCcccc
Confidence 211100 00 11223679999999999876
No 50
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=140.86 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=73.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
...+++|||+|||.++|+++|+++|++||.|.+++++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999998764 278999999999999999999999999999999999
Q ss_pred ccCc
Q 013749 427 SQLQ 430 (437)
Q Consensus 427 s~~~ 430 (437)
|+|.
T Consensus 96 AkPS 99 (99)
T 4fxv_A 96 ARPS 99 (99)
T ss_dssp CCBC
T ss_pred eeCC
Confidence 9863
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=138.95 Aligned_cols=85 Identities=26% Similarity=0.424 Sum_probs=77.3
Q ss_pred ccCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHh--CCCccCCcEEEEEe
Q 013749 349 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK--HASSLGGSIIRISF 426 (437)
Q Consensus 349 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l--~~~~~~g~~l~v~~ 426 (437)
...+|+++|||+|||+++++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.| ++..+.|++|+|+|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3557789999999999999999999999999999999885 5899999999999999999987 56779999999999
Q ss_pred ccCcccccc
Q 013749 427 SQLQSIREN 435 (437)
Q Consensus 427 s~~~~~~~~ 435 (437)
|+++..+..
T Consensus 88 a~~~~~~~~ 96 (101)
T 2cq1_A 88 SNHKELKTS 96 (101)
T ss_dssp CSCSSCCCC
T ss_pred cCcccCcCC
Confidence 999888764
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-20 Score=139.91 Aligned_cols=83 Identities=34% Similarity=0.519 Sum_probs=76.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCC--CccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~s~~ 429 (437)
+++++|||+|||+++|+++|+++|++||.|.++++++ +||||||+|.+.++|.+|++.|++ ..|.|++|+|+||++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 5678999999999999999999999999999999985 589999999999999999998864 689999999999999
Q ss_pred ccccccC
Q 013749 430 QSIRENS 436 (437)
Q Consensus 430 ~~~~~~~ 436 (437)
+..++.+
T Consensus 92 ~~~~~~~ 98 (105)
T 1sjq_A 92 KELKTDS 98 (105)
T ss_dssp SSCCCTT
T ss_pred CCCCccc
Confidence 8877654
No 53
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-20 Score=141.83 Aligned_cols=86 Identities=33% Similarity=0.496 Sum_probs=78.8
Q ss_pred cCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCC--CccCCcEEEEEec
Q 013749 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIRISFS 427 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~s 427 (437)
..+|+++|||+|||+++|+++|+++|++||.|.++++++ +||||||+|.+.++|.+|++.+++ ..+.|++|+|+||
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 456789999999999999999999999999999999986 489999999999999999999874 6899999999999
Q ss_pred cCccccccCC
Q 013749 428 QLQSIRENSQ 437 (437)
Q Consensus 428 ~~~~~~~~~~ 437 (437)
+++..++.++
T Consensus 105 ~~k~~~~~~~ 114 (119)
T 2ad9_A 105 NHKELKTDSS 114 (119)
T ss_dssp SSSSCCCCCC
T ss_pred cCCCCCcccc
Confidence 9999887653
No 54
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=140.54 Aligned_cols=81 Identities=28% Similarity=0.494 Sum_probs=75.8
Q ss_pred CCCceEEEEcCCCcc-CcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~-~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
.+|+++|||+|||++ ++|+||+++|++||.|.+|+++++||||||+|.+.++|.+|++.|++....+.|++|+|.|+..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 468999999999998 9999999999999999999999999999999999999999999998776679999999999876
Q ss_pred cc
Q 013749 81 QE 82 (437)
Q Consensus 81 ~~ 82 (437)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 55
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.8e-19 Score=147.74 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=106.7
Q ss_pred eCCccEEEEEecChhHHHHHHHHc-CCCCCCCCCceEEEEEecCCcceeeecCCcccCccCCCCCCCCCCCCCCCCCCCC
Q 013749 135 KSAGFQALIQYQLRPSAVVARSSL-QGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213 (437)
Q Consensus 135 ~~~g~~afV~f~~~~~A~~A~~~l-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.-+|+ ++|+|.+.++|++|++.+ +|..+.| .+.+.++........... ....
T Consensus 11 ~l~G~-~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~-----------~~~~------------ 63 (150)
T 2i2y_A 11 TLKGE-TTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSH-----------HHHH------------ 63 (150)
T ss_dssp SSCEE-EEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSS-----------SCCC------------
T ss_pred ccccc-ceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccc-----------cccc------------
Confidence 34676 999999999999999999 8988876 567766643211100000 0000
Q ss_pred CCCCcccchhhhhhhhcCCCCCCCCCCCCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHH
Q 013749 214 GVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 293 (437)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~ 293 (437)
........+.++|||+|||+ .+++++|+++|++||.|.+|++..+.+|||||+|.+.+
T Consensus 64 ---------------------~~~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 64 ---------------------HMHRDSCPLDCKVYVGNLGN-NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp ---------------------CSCSSSSTTSCEEEEESCCS-CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred ---------------------cccccCCCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 00011233456999999998 69999999999999999999999888999999999999
Q ss_pred HHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 294 QAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 294 ~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
+|..|+..|||..+.|++|+|.|+++.
T Consensus 122 ~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 122 DAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999998765
No 56
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=136.61 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=72.7
Q ss_pred CCCcceEEecCCCC-CCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCC--ccCCcEEEEEec
Q 013749 351 CSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS--SLGGSIIRISFS 427 (437)
Q Consensus 351 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~s 427 (437)
..|+++|||+|||+ ++|++||+++|++||.|.++.+++ +++||||+|.+.++|.+|++.||+. .|.|++|+|+||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 35679999999999 999999999999999999999985 5789999999999999999999875 489999999999
Q ss_pred cC-cccc
Q 013749 428 QL-QSIR 433 (437)
Q Consensus 428 ~~-~~~~ 433 (437)
+. +..+
T Consensus 90 ~~~~~~~ 96 (102)
T 1x4d_A 90 QKYKRIK 96 (102)
T ss_dssp CCCTTSS
T ss_pred CCCCCCC
Confidence 94 4443
No 57
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=136.03 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=75.5
Q ss_pred cCCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCC--ccCCcEEEEEec
Q 013749 350 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS--SLGGSIIRISFS 427 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~s 427 (437)
..+|+++|||+|||+++++++|+++|++||.|.++.+++ +||||||+|.+.++|.+|++.||+. .+.|++|+|+||
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 446789999999999999999999999999999999875 5899999999999999999998765 489999999999
Q ss_pred cCccccc
Q 013749 428 QLQSIRE 434 (437)
Q Consensus 428 ~~~~~~~ 434 (437)
+++..++
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 9887664
No 58
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=3e-19 Score=144.62 Aligned_cols=106 Identities=46% Similarity=0.810 Sum_probs=97.3
Q ss_pred CCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCceeEEEEEee-CCccEEEEEecChhHHHHHHHHcCCCCCCCCCceEEEE
Q 013749 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (437)
Q Consensus 95 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~i~~~~~-~~g~~afV~f~~~~~A~~A~~~l~~~~~~~~~~~l~~~ 173 (437)
..++++++|||+||++++++++|+++|++||.|.+|.+..+ ++|+ |||+|.+.++|..|++.|+|..|++++++|+|.
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgf-AFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQ-ALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEE-EEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCE-EEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34678999999999999999999999999999999998744 4566 999999999999999999999999888899999
Q ss_pred EecCCcceeeecCCcccCccCCCCCCCC
Q 013749 174 FSNLDELQVNYNNERSRDFTNPNLPAEQ 201 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
|++...+.++.++++++||+.|.+|...
T Consensus 120 ~Ak~~~l~vk~nn~rsrDyt~p~lp~~~ 147 (164)
T 1sjr_A 120 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 147 (164)
T ss_dssp ECSSSSCCCCCCSSSEEESSCSCCCCCC
T ss_pred EecCCcccccccCCCCccccCCCCCCCC
Confidence 9999999999999999999999888665
No 59
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.1e-19 Score=128.10 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=70.6
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+.+|+|+||++.+||++|+++|.+||.|.++++.. ++|||||+|.++++|.+|++.||++.+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999975 79999999999999999999999999999999999995
No 60
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=135.37 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=74.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+|.++|||+|||+++++++|+++|++||.|.+++|+.++. +|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999987643 789999999999999999999999999999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 61
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=3.6e-18 Score=141.37 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=71.9
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
+.++|||+|||+ .+++++|+++|+.||.|..|++..+. +|||||+|.+.++|..|+..|||..+.|+.|+|.|+
T Consensus 69 ~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTY-RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCT-TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345999999998 69999999999999999999998763 789999999999999999999999999999999999
Q ss_pred cCCC
Q 013749 318 KHPN 321 (437)
Q Consensus 318 ~~~~ 321 (437)
++..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8653
No 62
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=134.98 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=71.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccC-CeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHh-CCCccCCcEEEEEec
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMN----GKKQALVLFETEEQATEALVCK-HASSLGGSIIRISFS 427 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~s 427 (437)
+++|||+|||+++|+++|+++|++|| .|.++++++++ .+|||||+|.+.++|++|++.+ |+..+.|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999998653 3789999999999999999987 456799999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+++.-
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88754
No 63
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=3.9e-19 Score=126.76 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
+..|--|||+||++.+||++|+++|.+||+|.++.+...||||||+|.+.++|.+|++.||+. .+.|++|+|.++..
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~--~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNC--VLANTTIFAESPSE 80 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEECCCH
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC--EECCcEEEEEECCH
Confidence 456888999999999999999999999999999999999999999999999999999999998 99999999998743
No 64
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=133.67 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=72.9
Q ss_pred cCCCcceEEecCCCCC-CCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCC--CccCCcEEEEEe
Q 013749 350 CCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIRISF 426 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~ 426 (437)
...|+++|||+|||++ +++++|+++|++||.|.++.++ +++|||||+|.+.++|.+|++.||+ ..|.|++|+|+|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4567899999999998 9999999999999999999997 4689999999999999999998864 568999999999
Q ss_pred ccCccc
Q 013749 427 SQLQSI 432 (437)
Q Consensus 427 s~~~~~ 432 (437)
|+.+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 986543
No 65
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=1.9e-19 Score=144.10 Aligned_cols=123 Identities=12% Similarity=0.211 Sum_probs=76.8
Q ss_pred eEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCC
Q 013749 284 HALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 363 (437)
Q Consensus 284 ~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 363 (437)
+.|++|.+...+..|+..++|....|+.- ..++.+. + ...+.++|||+|||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~---------------------~-------~~~~~~~l~V~nLp 56 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP---------------------P-------DVEGMTSLKVDNLT 56 (135)
T ss_dssp ------------------------------CCSCCSC---------------------S-------SGGGCCCEEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC---------------------C-------CCCCCCEEEEeCCC
Confidence 56788888888999999888866544421 1111110 0 11235889999999
Q ss_pred CCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccccc
Q 013749 364 QDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 435 (437)
Q Consensus 364 ~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~~ 435 (437)
.++|+++|+++|++||.|..++++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+|++++.-...
T Consensus 57 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 57 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp SSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTT
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCcc
Confidence 999999999999999999999998653 378999999999999999999999999999999999998765543
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=130.28 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=77.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.++++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998764 3789999999999999999999999999999999999
Q ss_pred cCccccccC
Q 013749 428 QLQSIRENS 436 (437)
Q Consensus 428 ~~~~~~~~~ 436 (437)
+++..+..+
T Consensus 86 ~~~~~~~~~ 94 (99)
T 1whw_A 86 TIKKEASQS 94 (99)
T ss_dssp CCCSTTCCC
T ss_pred CCCcccccC
Confidence 998765543
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=127.04 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
++.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 346899999999999999999999999999999998763 2789999999999999999999999999999999999
Q ss_pred cCc
Q 013749 428 QLQ 430 (437)
Q Consensus 428 ~~~ 430 (437)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 68
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=133.35 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=81.4
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccccc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT 84 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~~~ 84 (437)
++|||+|||+++|+++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.|+.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999998 999999999999999999999998 899999999999876533
Q ss_pred ccccCCCCCCCCCCcEEEEEEeCcC
Q 013749 85 TMEQNAQGRGDEPNRILLVTIHHML 109 (437)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~v~nl~ 109 (437)
........+. .. ...|||+||+
T Consensus 79 ~~~~~~~~~~-~~--~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPPARR-KL--LEVLFNGPLE 100 (101)
T ss_dssp SCCCSCCCSC-CC--CSCCCSCCCC
T ss_pred ccCCCCCccc-cC--CCceecCCCC
Confidence 2222211111 11 2237999986
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=129.73 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=76.0
Q ss_pred CCcceEEecCCCCCCCHHHHH----HhhhccCCeeEEEEEeeCC-ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 352 SPTKMIHLSTLPQDVTEEEIV----SHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~-~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
...++|||+|||..+++++|+ ++|++||.|.+++++.++. ++||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345889999999999999999 9999999999999986533 88999999999999999999999999999999999
Q ss_pred ccCccccc
Q 013749 427 SQLQSIRE 434 (437)
Q Consensus 427 s~~~~~~~ 434 (437)
+++...++
T Consensus 87 a~~~~~~~ 94 (96)
T 2dgx_A 87 ATGASGPS 94 (96)
T ss_dssp CCCSSCCC
T ss_pred cCCCCCCC
Confidence 99887654
No 70
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3.5e-18 Score=124.96 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=72.2
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.+|||+|||.++++++|+++|++||.|.++.++.+.. +|+|||+|.+.++|++|++.|||..+.|+.|+|+||+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999999999987632 789999999999999999999999999999999999986
Q ss_pred c
Q 013749 431 S 431 (437)
Q Consensus 431 ~ 431 (437)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 71
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=5.8e-19 Score=131.43 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=68.7
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCC--eeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCc----cCCcEEEE
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASS----LGGSIIRI 424 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~----~~g~~l~v 424 (437)
+||||+|||+++|+++|+++|++||. |.+|++++++ .+|||||+|.+.++|++|++.|||.. ++||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 78999999999999999999999995 6789988763 37899999999999999999999974 88999999
Q ss_pred EeccC
Q 013749 425 SFSQL 429 (437)
Q Consensus 425 ~~s~~ 429 (437)
+||+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99986
No 72
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=5e-19 Score=138.12 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=91.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc---CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~---~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
++++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF--NVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC--BSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEe
Confidence 467899999999999999999999999999999999876 589999999999999999999998 899999999998
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEeCcCCCCCHHHHHHhcCCCCc
Q 013749 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF 126 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~ 126 (437)
.+.... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~---------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF---------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT---------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh---------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 865322 346677889999999999985
No 73
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=3e-18 Score=125.96 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
++.++|||+|||.++++++|+++|++||.|..+.++.++ .+|+|||+|.+.++|++|++.|||..+.|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998763 2789999999999999999999999999999999998
Q ss_pred c
Q 013749 428 Q 428 (437)
Q Consensus 428 ~ 428 (437)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=129.55 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=76.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC-------CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-------GKKQALVLFETEEQATEALVCKHASSLGGSIIRI 424 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-------~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 424 (437)
+++++|||+|||.++++++|+++|++||.|..+.++.++ .++||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 356899999999999999999999999999999998653 2689999999999999999999999999999999
Q ss_pred EeccCcccccc
Q 013749 425 SFSQLQSIREN 435 (437)
Q Consensus 425 ~~s~~~~~~~~ 435 (437)
+|++++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998765543
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.8e-18 Score=129.13 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=75.2
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
|+++|||+|||..+++++|+++|++||.|.+++++.++. +|||||+|.+.++|++|++.|||..+.|+.|+|+||+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 468999999999999999999999999999999987632 7899999999999999999999999999999999999
Q ss_pred Ccccc
Q 013749 429 LQSIR 433 (437)
Q Consensus 429 ~~~~~ 433 (437)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87654
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=129.87 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=76.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.+++ ++||||+|.+.++|++|++.|||..|.|+.|+|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 4568999999999999999999999999999999987543 78999999999999999999999999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2cqi_A 93 PSSQK 97 (103)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 76554
No 77
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=129.43 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=74.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.+++++|||+|||+++|+++|+++|++||.|.+|.+.+++|||||+|.+.++|.+|++.|++. .++|++|.|.|+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM--PLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC--CBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC--EeCCceEEEEEcCCC
Confidence 467889999999999999999999999999999999999999999999999999999999998 899999999998875
Q ss_pred c
Q 013749 82 E 82 (437)
Q Consensus 82 ~ 82 (437)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 78
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=129.74 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee--CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM--NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.+.++|||+|||..+++++|+++|++||.|..+.++.+ ..++||||+|.+.++|.+|++.|||..+.|+.|+|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 45689999999999999999999999999999999976 3378999999999999999999999999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2d9p_A 93 KEERQ 97 (103)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76544
No 79
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=128.81 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=70.6
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
.+++|||+|||+ .+|+++|+++|++||.|.+|++..++ +|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 18 ~gt~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQ-NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345899999999 69999999999999999999998764 679999999999999999999999999999999998
Q ss_pred cC
Q 013749 318 KH 319 (437)
Q Consensus 318 ~~ 319 (437)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 80
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=128.57 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=76.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.+++ ++||||+|.+.++|++|++.|||..|.|+.|+|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 4568999999999999999999999999999999997644 88999999999999999999999999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2cq3_A 93 RVMTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76554
No 81
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-19 Score=131.44 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=68.9
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCc-cceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G-~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
|.+|||+|||+++||+||+++|++|| +|.+|+|+++ +|||||+|.+.++|.+|++.+++. ..++|++|.|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS-LNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE-EEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC-eEECCEEEEEEE
Confidence 67999999999999999999999999 7999999876 499999999999999999876432 279999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+.++.
T Consensus 80 a~~~~ 84 (91)
T 2lxi_A 80 SDPKP 84 (91)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 98764
No 82
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=4.7e-18 Score=126.91 Aligned_cols=83 Identities=25% Similarity=0.271 Sum_probs=76.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
++.++|||+|||.++++++|+++|++||.|..++++.+.+ ++||||+|.+.++|++|++.|||..+.|+.|+|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4568999999999999999999999999999999987543 78999999999999999999999999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+....
T Consensus 86 ~~~~~ 90 (92)
T 2dgv_A 86 ASGPS 90 (92)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 83
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=127.53 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=75.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+++++|||+|||.++++++|+++|++||.|..++++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999998763 3789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887543
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=127.09 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=73.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.+++++|||+|||..+++++|+++|++||.|..+.++.++ .+|+|||+|.+.++|++|++.|||..+.|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999998753 278999999999999999999999999999999999
Q ss_pred ccC
Q 013749 427 SQL 429 (437)
Q Consensus 427 s~~ 429 (437)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 975
No 85
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=127.57 Aligned_cols=81 Identities=25% Similarity=0.353 Sum_probs=74.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+.++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999998764 26899999999999999999999999999999999999
Q ss_pred Cccc
Q 013749 429 LQSI 432 (437)
Q Consensus 429 ~~~~ 432 (437)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8754
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=128.99 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=76.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++++|||+|||..+++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3457899999999999999999999999999999998763 278999999999999999999999999999999999
Q ss_pred ccCccccc
Q 013749 427 SQLQSIRE 434 (437)
Q Consensus 427 s~~~~~~~ 434 (437)
++++....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99886554
No 87
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=8.8e-18 Score=131.01 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||..+++++|+++|++||.|..++++.++. +|||||+|.+.++|++|++.|||..|.|+.|+|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999997632 789999999999999999999999999999999999
Q ss_pred cCcccccc
Q 013749 428 QLQSIREN 435 (437)
Q Consensus 428 ~~~~~~~~ 435 (437)
+++.....
T Consensus 93 ~~~~~~~~ 100 (115)
T 2dgo_A 93 TRKPPAPK 100 (115)
T ss_dssp SCCCCCSC
T ss_pred cCCCCCCc
Confidence 98876554
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.1e-18 Score=132.08 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=72.5
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccC-CeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
...+|||+|||+++++++|+++|++|| .|..+.+...+.+|||||+|.+.++|++|++.|||..+.|+.|+|++++.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 357899999999999999999999999 9999999755679999999999999999999999999999999999998654
No 89
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=130.92 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.+|+++|||+|||++++|++|+++|++||.|.+|.|++| +|||||+|.+.++|++|++.||+. .+.|+.|.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~--~~~gr~i~V 80 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT--SVMGNIIHA 80 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEE
Confidence 478999999999999999999999999999999999876 489999999999999999999999 999999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.++...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998754
No 90
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=125.58 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=73.1
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC-----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.++|||+|||.++++++|+++|++||.|.++.++.+. .+|+|||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5789999999999999999999999999999998765 47899999999999999999999999999999999998
Q ss_pred Ccc
Q 013749 429 LQS 431 (437)
Q Consensus 429 ~~~ 431 (437)
++.
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 91
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=129.03 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=75.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.+++++|||+|||..+++++|+++|++||.|..++++.++. +|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999997643 78999999999999999999999999999999999
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 99875
No 92
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=124.74 Aligned_cols=79 Identities=27% Similarity=0.366 Sum_probs=73.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
++.++|||+|||.++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.|||..+.|+.|+|+|++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 456899999999999999999999999999999997 7899999999999999999999999999999999998876
Q ss_pred ccc
Q 013749 432 IRE 434 (437)
Q Consensus 432 ~~~ 434 (437)
...
T Consensus 82 ~~~ 84 (90)
T 2dnq_A 82 KAS 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=5.5e-18 Score=141.00 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=74.9
Q ss_pred EEeCCHHHHHHHHHHhcCceeC--CcEEEEEEccCCCCCCCCCccccccCCCCCCCcchhccccccCCCcceEEecCCCC
Q 013749 287 VQMGDGFQAELAVHFLKGALLF--GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 364 (437)
Q Consensus 287 V~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 364 (437)
.+|.+.++|..|+..+++.... |+.+...++.... ...|.......... .........++++|||+|||.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~------~~~~~~~~~s~~~~--~~~~~~~~~~~~~l~V~nLp~ 82 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA------IHSYERVRNEDDDE--LEPGPQRSVEGWILFVTSIHE 82 (165)
T ss_dssp ---------------------------------------------------------------CCCCC-CEEEEEESCCT
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc------ccCccccccCCCCC--CCCCCCCCCCCCEEEEeCCCC
Confidence 7889999999999999986664 6666665543221 00111100000000 000001234568999999999
Q ss_pred CCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccccc
Q 013749 365 DVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 434 (437)
Q Consensus 365 ~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~~ 434 (437)
.+++++|+++|++||.|..+.++.++ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.|++++..+.
T Consensus 83 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 83 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999999998763 27899999999999999999999999999999999998776544
No 94
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.2e-17 Score=128.05 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=77.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCC---cEEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGG---SIIRIS 425 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~ 425 (437)
+++++|||+|||.++++++|+++|++||.|..+.++.++. +|||||+|.+.++|++|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4579999999999999999999999999999999987643 7899999999999999999999999998 999999
Q ss_pred eccCcccccc
Q 013749 426 FSQLQSIREN 435 (437)
Q Consensus 426 ~s~~~~~~~~ 435 (437)
|++++..++.
T Consensus 93 ~a~~~~~~~~ 102 (105)
T 2dnh_A 93 FADTDKESGP 102 (105)
T ss_dssp ESCSSCCCSC
T ss_pred ECccCcccCC
Confidence 9998876543
No 95
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=130.83 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=77.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.++.++|||+|||..+++++|+++|++||.|..++++. +++||||+|.+.++|.+|++.|||..+.|+.|+|.|++++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45678999999999999999999999999999999986 4899999999999999999999999999999999999998
Q ss_pred cccccC
Q 013749 431 SIRENS 436 (437)
Q Consensus 431 ~~~~~~ 436 (437)
.....+
T Consensus 100 ~~~~~~ 105 (109)
T 1x4g_A 100 PDMTSG 105 (109)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 766554
No 96
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=127.57 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=73.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC--CcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG--GSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~s~~ 429 (437)
+++++|||+|||..+++++|+++|++||.|..+.+.. +++||||+|.+.++|++|++.|||..+. |+.|+|+|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 5678999999999999999999999999999999985 4889999999999999999999999999 99999999998
Q ss_pred cc
Q 013749 430 QS 431 (437)
Q Consensus 430 ~~ 431 (437)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 97
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=126.85 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=72.3
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.++.++|||+|||..+++++|+++|++||.|..+.++.++ .+++|||+|.+.++|++|++.|||..+.|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3456899999999999999999999999999999998753 378999999999999999999999999999999999
Q ss_pred cc
Q 013749 427 SQ 428 (437)
Q Consensus 427 s~ 428 (437)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 98
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=128.78 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCccc--CeEEEEEecc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR--GRNVYVQFSS 79 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~--g~~l~v~~s~ 79 (437)
.+|+++|||+|||.++|+++|+++|++||.|.+|.+.++++||||+|.+.++|++|++.|++. .+. |+.|.|.|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF--PLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC--BCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC--EeCCCCcEEEEEECC
Confidence 467899999999999999999999999999999999999999999999999999999999998 788 9999999987
Q ss_pred cc
Q 013749 80 HQ 81 (437)
Q Consensus 80 ~~ 81 (437)
++
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 99
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.2e-17 Score=130.20 Aligned_cols=84 Identities=14% Similarity=0.280 Sum_probs=76.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.++.++|||+|||.++++++|+++|++||.|..++++.++. ++||||+|.+.++|++|++.|||..|.|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35568999999999999999999999999999999987642 68999999999999999999999999999999999
Q ss_pred ccCccccc
Q 013749 427 SQLQSIRE 434 (437)
Q Consensus 427 s~~~~~~~ 434 (437)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99876543
No 100
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=4.5e-18 Score=124.98 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=72.4
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
+.+++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|++|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 80 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIR 80 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC--EECCcEEE
Confidence 4678999999999999999999999999999999999875 599999999999999999999998 89999999
Q ss_pred EEecc
Q 013749 75 VQFSS 79 (437)
Q Consensus 75 v~~s~ 79 (437)
|.|++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99874
No 101
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=126.72 Aligned_cols=83 Identities=14% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||..+++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++ ||+..+.|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998753 37899999999999999998 9999999999999999
Q ss_pred cCcccccc
Q 013749 428 QLQSIREN 435 (437)
Q Consensus 428 ~~~~~~~~ 435 (437)
+++..+..
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98876543
No 102
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=130.85 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=74.1
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
.++|||+|||.++++++|+++|++||.|..+.+++ .++||||+|.+.++|++|++.|||..+.|++|+|+|++.....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccC
Confidence 57999999999999999999999999999999874 6889999999999999999999999999999999999887654
Q ss_pred cc
Q 013749 434 EN 435 (437)
Q Consensus 434 ~~ 435 (437)
.+
T Consensus 88 ~~ 89 (111)
T 1whx_A 88 AA 89 (111)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=127.69 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=75.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.++.++|||+|||..+++++|+++|++||.|..+.+.+ +++||||+|.+.++|++|++.|||..+.|+.|+|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 45678999999999999999999999999999999984 5899999999999999999999999999999999999987
Q ss_pred ccc
Q 013749 431 SIR 433 (437)
Q Consensus 431 ~~~ 433 (437)
...
T Consensus 90 ~~~ 92 (99)
T 2cpj_A 90 ASL 92 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 104
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=128.44 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=74.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.++++|||+|||..+++++|+++|++||.|..+.++.++. +|||||+|.+.++|++|++.|||..+.|+.|+|+||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4568999999999999999999999999999999987643 789999999999999999999999999999999999
Q ss_pred cCcc
Q 013749 428 QLQS 431 (437)
Q Consensus 428 ~~~~ 431 (437)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 105
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=128.74 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.++ .++||||+|.+.++|++|++.|||..|.|+.|+|+|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998753 3789999999999999999999999999999999999
Q ss_pred cCccccc
Q 013749 428 QLQSIRE 434 (437)
Q Consensus 428 ~~~~~~~ 434 (437)
+++....
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 106
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=125.81 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+.++|||+|||..+++++|+++|++||.|..++++.++. ++||||+|.+.++|++|++.|||..+.|+.|+|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4468999999999999999999999999999999987643 7899999999999999999999999999999999987
Q ss_pred C
Q 013749 429 L 429 (437)
Q Consensus 429 ~ 429 (437)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=129.41 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=75.9
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
|.+++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCcEEE
Confidence 5678999999999999999999999999999999999876 599999999999999999999988 89999999
Q ss_pred EEeccccccc
Q 013749 75 VQFSSHQELT 84 (437)
Q Consensus 75 v~~s~~~~~~ 84 (437)
|.|+.++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9998876543
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=124.48 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhh-ccCCCcccCeEEEEEecc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~-~~~~~~~~g~~l~v~~s~ 79 (437)
.+++++|||+|||.++++++|+++|++||.|.+|.+++++|||||+|.+.++|.+|++.| ++. .++|++|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~--~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL--IVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC--EETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe--eECCCEEEEEecC
Confidence 357799999999999999999999999999999999999999999999999999999988 777 8999999999964
No 109
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=129.02 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=76.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||..+++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456899999999999999999999999999999998652 3789999999999999999999999999999999999
Q ss_pred cCcccccc
Q 013749 428 QLQSIREN 435 (437)
Q Consensus 428 ~~~~~~~~ 435 (437)
+++..+..
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876553
No 110
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=130.16 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=74.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.+++ +|||||+|.+.++|++|++.|||..++|+.|+|+++++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4568999999999999999999999999999999987644 78999999999999999999999999999999999998
Q ss_pred cc
Q 013749 430 QS 431 (437)
Q Consensus 430 ~~ 431 (437)
+.
T Consensus 107 ~~ 108 (109)
T 2err_A 107 RV 108 (109)
T ss_dssp SC
T ss_pred Cc
Confidence 74
No 111
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=127.49 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEE-EEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~-~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
+++++|||+|||.++++++|+++|++||.|..+ +++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 888652 378999999999999999999999999999999999
Q ss_pred ccCccccc
Q 013749 427 SQLQSIRE 434 (437)
Q Consensus 427 s~~~~~~~ 434 (437)
++++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876543
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=129.86 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=75.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.++.++|||+|||.++++++|+++|++||.|.+|.+++++|||||+|.+.++|.+|++.|++. .++|+.|.|.|+.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT--TIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEecCCC
Confidence 356789999999999999999999999999999999999999999999999999999999998 899999999999876
Q ss_pred cc
Q 013749 82 EL 83 (437)
Q Consensus 82 ~~ 83 (437)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 113
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=126.22 Aligned_cols=75 Identities=17% Similarity=0.411 Sum_probs=68.2
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCcc--ceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCC--CcccCeEEEE
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGV--ITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQ--PTIRGRNVYV 75 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~--i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~--~~~~g~~l~v 75 (437)
.+|||+|||+++||++|+++|++||. |.+|++++| ||||||+|.+.++|.+|++.+++.. +.++|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 68999999999999999999999995 679999876 4899999999999999999999863 4589999999
Q ss_pred Eeccc
Q 013749 76 QFSSH 80 (437)
Q Consensus 76 ~~s~~ 80 (437)
.|++.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.5e-18 Score=126.99 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
..+++|||+|||..+++++|+++|++||.|. +.++.++.+|||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3468999999999999999999999999997 677777789999999999999999999999999999999999998864
No 115
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=125.92 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=72.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeE--------EEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccC
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFEMNG----KKQALVLFETEEQATEALVCKHASSLG 418 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~ 418 (437)
.++.++|||+|||.++++++|+++|++||.|.. ++++.++. +|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 355789999999999999999999999999999 99987632 789999999999999999999999999
Q ss_pred CcEEEEEecc
Q 013749 419 GSIIRISFSQ 428 (437)
Q Consensus 419 g~~l~v~~s~ 428 (437)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 116
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=7.6e-18 Score=126.76 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=73.9
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
|+++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY--QLGSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEE
Confidence 7899999999999999999999999999999999876 599999999999999999999998 89999999999
Q ss_pred ccccccc
Q 013749 78 SSHQELT 84 (437)
Q Consensus 78 s~~~~~~ 84 (437)
+.++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9876543
No 117
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=132.23 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=74.3
Q ss_pred CCCcceEEecCCCCCCCHHHHH----HhhhccCCeeEEEEEee-CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIV----SHLEEHGSIVNTKLFEM-NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~-~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
.+|+++|||+|||+.+++++|+ ++|++||.|.+|.+... +.+|||||+|.+.++|.+|++.|||..|.|+.|+|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3567899999999999999876 69999999999988643 458999999999999999999999999999999999
Q ss_pred eccCcccc
Q 013749 426 FSQLQSIR 433 (437)
Q Consensus 426 ~s~~~~~~ 433 (437)
||+.+...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99987643
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=124.10 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=73.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.++|||+|||.++|+++|+++|++||.|..++++ ++||||+|.+.++|++|++.|||..+.|+.|+|+|++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 456899999999999999999999999999999997 5599999999999999999999999999999999999876
Q ss_pred ccc
Q 013749 432 IRE 434 (437)
Q Consensus 432 ~~~ 434 (437)
.+.
T Consensus 83 ~~~ 85 (90)
T 2dnp_A 83 KKS 85 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 119
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.8e-18 Score=127.40 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=67.0
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccC--CeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+|||+|||.++|+++|+++|++|| .|.+++++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999998763 27899999999999999999999999999999999999
Q ss_pred Cccccc
Q 013749 429 LQSIRE 434 (437)
Q Consensus 429 ~~~~~~ 434 (437)
++.-.+
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876554
No 120
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.2e-17 Score=122.16 Aligned_cols=75 Identities=12% Similarity=0.242 Sum_probs=71.1
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
+.+|||+|||.++++++|+++|++||+|.++.++++ +|||||+|.+.++|.+|++.+++. .++|++|.|.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC--eeCCcEEEEEec
Confidence 578999999999999999999999999999999977 599999999999999999999998 899999999998
Q ss_pred ccc
Q 013749 79 SHQ 81 (437)
Q Consensus 79 ~~~ 81 (437)
.++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 875
No 121
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=124.10 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=70.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v 80 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRT 80 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCeEEEE
Confidence 357899999999999999999999999999999999987 489999999999999999999998 899999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.|+.++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 998764
No 122
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-18 Score=130.09 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCCceEEEE--cCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcc-----cCeEEE
Q 013749 2 TEPSKVIHV--RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTI-----RGRNVY 74 (437)
Q Consensus 2 ~~~s~~l~V--~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~-----~g~~l~ 74 (437)
.+|+++||| +|||.+++|++|+++|++||.|.+|.+.++||||||+|.+.++|++|++.||+. .+ .|++|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~--~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK--EVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC--EEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--EEccccCCCcEEE
Confidence 468999999 779999999999999999999999999999999999999999999999999998 55 689999
Q ss_pred EEecccccc
Q 013749 75 VQFSSHQEL 83 (437)
Q Consensus 75 v~~s~~~~~ 83 (437)
|.|+....+
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999775443
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=126.25 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
..++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|++. .++|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 357799999999999999999999999999999999987 699999999999999999999998 89999999999
Q ss_pred ccccccc
Q 013749 78 SSHQELT 84 (437)
Q Consensus 78 s~~~~~~ 84 (437)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 8876543
No 124
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=128.63 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.+.++|||+|||..+++++|+++|++||.|..+.+..+.. ++||||+|.+.++|++|++.||+..|.|+.|+|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 4568999999999999999999999999999999976533 789999999999999999999999999999999999886
Q ss_pred cc
Q 013749 431 SI 432 (437)
Q Consensus 431 ~~ 432 (437)
.-
T Consensus 100 ~~ 101 (109)
T 1x4a_A 100 RG 101 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2e-17 Score=124.35 Aligned_cols=77 Identities=13% Similarity=0.248 Sum_probs=71.9
Q ss_pred cCCCcceEEecCCCC-CCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 350 CCSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
..+++++|||+|||. ++++++|+++|++||.|..+++. +|||||+|.+.++|.+|++.|||..+.|+.|+|+|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 446689999999998 99999999999999999999993 8999999999999999999999999999999999998
Q ss_pred Cc
Q 013749 429 LQ 430 (437)
Q Consensus 429 ~~ 430 (437)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 126
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=125.92 Aligned_cols=80 Identities=24% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
+.++++|||+|||.++++++|+++|++||+|.+|.+++++ |||||+|.+.++|.+|++.|++. .+.|++|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ--VFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE--ESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC--EECCcEEEE
Confidence 4688999999999999999999999999999999998764 99999999999999999999988 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99987644
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=128.18 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=76.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhC------CCccCCcE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKH------ASSLGGSI 421 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~------~~~~~g~~ 421 (437)
.++++|||+|||+++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|.+|++.|| +..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456899999999999999999999999999999998663 37899999999999999999999 99999999
Q ss_pred EEEEeccCcccccc
Q 013749 422 IRISFSQLQSIREN 435 (437)
Q Consensus 422 l~v~~s~~~~~~~~ 435 (437)
|+|.|++++.....
T Consensus 93 l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 93 LKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEECCCCccCCC
Confidence 99999998765543
No 128
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=1.7e-17 Score=126.49 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.++|||+|||.++|+++|+++|++||.|..+.++ ++||||+|.+.++|++|++.|||..|.|+.|+|+|++++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 456899999999999999999999999999999996 6799999999999999999999999999999999998877
Q ss_pred cccc
Q 013749 432 IREN 435 (437)
Q Consensus 432 ~~~~ 435 (437)
.+.+
T Consensus 85 ~~~~ 88 (103)
T 2dgu_A 85 QKRK 88 (103)
T ss_dssp CCCC
T ss_pred ccch
Confidence 6543
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=122.91 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.++|||+|||.++++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|||..+.|+.|+|+|++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 456899999999999999999999999999999997 5599999999999999999999999999999999998875
Q ss_pred cc
Q 013749 432 IR 433 (437)
Q Consensus 432 ~~ 433 (437)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 130
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=122.75 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++ ++||||+|.+.++|.+|++.+++. .++|+.|.|.|+.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHY--KLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCC--ccCCcEEEEEECCCC
Confidence 4678999999999999999999999999999999998 789999999999999999999988 899999999998876
Q ss_pred cc
Q 013749 82 EL 83 (437)
Q Consensus 82 ~~ 83 (437)
..
T Consensus 81 ~~ 82 (90)
T 2dnq_A 81 SK 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 131
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=127.17 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=76.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||..+++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 456899999999999999999999999999999998764 3789999999999999999999999999999999999
Q ss_pred cCccccc
Q 013749 428 QLQSIRE 434 (437)
Q Consensus 428 ~~~~~~~ 434 (437)
+++....
T Consensus 93 ~~~~~~~ 99 (105)
T 1x5u_A 93 SAHNKNL 99 (105)
T ss_dssp TTTSCCC
T ss_pred CCCCcCC
Confidence 8876543
No 132
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=129.08 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=75.4
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
+.++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 35899999999999999999999999999999998754 368999999999999999999999999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+....
T Consensus 86 ~~~~~ 90 (116)
T 2fy1_A 86 PSFQS 90 (116)
T ss_dssp SSCSS
T ss_pred CCCCC
Confidence 76543
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=127.46 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=76.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhc-cCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCc-cCCcEEEEEe
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEE-HGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASS-LGGSIIRISF 426 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~-~~g~~l~v~~ 426 (437)
.++++|||+|||.++++++|+++|++ ||.|..+.++.+. .+|||||+|.+.++|.+|++.|||.. +.|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 9999999998763 37899999999999999999999999 9999999999
Q ss_pred ccCcccccc
Q 013749 427 SQLQSIREN 435 (437)
Q Consensus 427 s~~~~~~~~ 435 (437)
++++.....
T Consensus 87 a~~~~~~~~ 95 (104)
T 2dhg_A 87 AIPKASRVK 95 (104)
T ss_dssp CCCCCSCCC
T ss_pred ccCCCcCCC
Confidence 988776544
No 134
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.78 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=74.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEE-EEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v-~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
..++++|||+|||.++++++|+++|++||.|.+| .++++ +|||||+|.+.++|.+|++.|++. .++|++|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 79 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ--YLCNRPIT 79 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCEEEE
Confidence 4688999999999999999999999999999999 99886 599999999999999999999998 89999999
Q ss_pred EEecccccc
Q 013749 75 VQFSSHQEL 83 (437)
Q Consensus 75 v~~s~~~~~ 83 (437)
|.|+.++..
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999887643
No 135
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=127.39 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 346899999999999999999999999999999998753 2789999999999999999999999999999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+++.-
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87643
No 136
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=123.76 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
++++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|++|+|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 79 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF--ELAGRPMRV 79 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEE
Confidence 578999999999999999999999999999999999986 489999999999999999999998 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.|+.++.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9987754
No 137
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2e-17 Score=133.94 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=72.2
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCC--cEEEEEeccCccc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG--SIIRISFSQLQSI 432 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~s~~~~~ 432 (437)
.+|||+|||+.+|+++|+++|++||.|.++.++.++.++||||+|.+.++|++|++.|||..|.| +.|+|+||+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 45889999999999999999999999999999876668899999999999999999999999965 9999999998854
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=8.1e-18 Score=127.94 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
+++++|||+|||.++++++|+++|++||.|.+|++.+.+|||||+|.+.++|.+|+..+++. .++|+.|+|.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF--PFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEeccC
Confidence 45789999999999999999999999999999999999999999999999999999999988 89999999999765
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.1e-18 Score=127.63 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+.+++|||+|||.++++++|+++|++||.|.++++. +.+|||||+|.+.++|.+|+..|||..+.|+.|+|+|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 446899999999999999999999999999999998 57899999999999999999999999999999999999874
No 140
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=126.94 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee---C--CceEEEEEecCHHHHHHHHHHh-CCCccCCcEEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---N--GKKQALVLFETEEQATEALVCK-HASSLGGSIIRIS 425 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~--~~~~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~ 425 (437)
.+.++|||+|||..+++++|+++|++||.|..+.++.+ . .+|||||+|.+.++|++|++.| ||..|.|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45689999999999999999999999999999999876 1 2789999999999999999999 9999999999999
Q ss_pred eccCccccc
Q 013749 426 FSQLQSIRE 434 (437)
Q Consensus 426 ~s~~~~~~~ 434 (437)
|++++....
T Consensus 93 ~a~~~~~~~ 101 (107)
T 2cph_A 93 WADSEVTVQ 101 (107)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 141
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=127.35 Aligned_cols=81 Identities=17% Similarity=0.379 Sum_probs=75.1
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
|..++++|||+|||+++++++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|++|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK--SVDGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC--CTTSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 5678899999999999999999999999999999999986 489999999999999999999998 89999999
Q ss_pred EEecccccc
Q 013749 75 VQFSSHQEL 83 (437)
Q Consensus 75 v~~s~~~~~ 83 (437)
|.|+.++..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999887643
No 142
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=5.3e-18 Score=128.37 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=72.9
Q ss_pred cceEEecCCCC------CCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCC-cEE
Q 013749 354 TKMIHLSTLPQ------DVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGG-SII 422 (437)
Q Consensus 354 ~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g-~~l 422 (437)
+++|||+|||. ++++++|+++|++||.|.+++++.++. +|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58999999999 999999999999999999999997753 7899999999999999999999999999 999
Q ss_pred EEEeccCcc
Q 013749 423 RISFSQLQS 431 (437)
Q Consensus 423 ~v~~s~~~~ 431 (437)
+|.+++++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 143
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3.5e-17 Score=125.83 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
..+.++|||+|||..+++++|+++|++||.|..++++.++ .+|+|||+|.+.++|++|++.|||..+.|+.|+|+||
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3457899999999999999999999999999999998663 3789999999999999999999999999999999998
Q ss_pred cC
Q 013749 428 QL 429 (437)
Q Consensus 428 ~~ 429 (437)
+.
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 144
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=119.09 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=67.0
Q ss_pred CCCcce-EEecCCCCCCCHHH----HHHhhhcc-CCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEE
Q 013749 351 CSPTKM-IHLSTLPQDVTEEE----IVSHLEEH-GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRI 424 (437)
Q Consensus 351 ~~~~~~-l~v~nlp~~~t~~~----l~~~f~~~-G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 424 (437)
.+|+.| |||+|||+++++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|++.|||..+.||+|+|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 356677 99999999999887 55899999 5998882 399999999999999999999999999999999
Q ss_pred EeccCcc
Q 013749 425 SFSQLQS 431 (437)
Q Consensus 425 ~~s~~~~ 431 (437)
+||+.+.
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998764
No 145
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=125.49 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc---------CCeEEEEecChhHHHHHHHhhccCCCcccCeE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---------KNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~---------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~ 72 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 79 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH--TVDGHK 79 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC--EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC--eeCCeE
Confidence 468899999999999999999999999999999999853 479999999999999999999998 899999
Q ss_pred EEEEecccccc
Q 013749 73 VYVQFSSHQEL 83 (437)
Q Consensus 73 l~v~~s~~~~~ 83 (437)
|.|.|+.++..
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999887643
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=122.04 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHh-CCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK-HASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~s~ 428 (437)
++.++|||+|||..+++++|+++|++||.|..+.+++ ++|+|||+|.+.++|.+|++.| ||..+.|+.|+|+||+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3468999999999999999999999999999999985 5899999999999999999999 9999999999999986
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=129.13 Aligned_cols=79 Identities=13% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
.++++|||+|||.++++++|+++|++||.|.+|.+.++++||||+|.+.++|.+|++.||+. .+.|++|.|.|+....
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS--KFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC--EECCeEEEEEECCCCc
Confidence 35689999999999999999999999999999999999999999999999999999999998 8999999999987653
Q ss_pred c
Q 013749 83 L 83 (437)
Q Consensus 83 ~ 83 (437)
.
T Consensus 86 ~ 86 (111)
T 1whx_A 86 F 86 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 148
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=126.87 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=74.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.++++|||+|||.++++++|+++|++||.|..++++.++. ++||||+|.+.++|++|++.|||..|.|+.|+|+|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 4568999999999999999999999999999999987643 7899999999999999999999999999999999997
Q ss_pred Cccc
Q 013749 429 LQSI 432 (437)
Q Consensus 429 ~~~~ 432 (437)
...-
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 149
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=129.00 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCcceEEecCCCCCCCHHHHH---HhhhccCCeeEEEEEeeCC-------ceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIV---SHLEEHGSIVNTKLFEMNG-------KKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~~~-------~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
.+.++|||+|||+++++++|+ ++|++||.|..+.++.++. +|||||+|.+.++|++|++.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 9999999999999986542 489999999999999999999999999999
Q ss_pred EEEEeccCccc
Q 013749 422 IRISFSQLQSI 432 (437)
Q Consensus 422 l~v~~s~~~~~ 432 (437)
|+|+||+++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998874
No 150
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=124.13 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ +++. .++|+.|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~--~~~g~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH--DIMGKKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC--BSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC--EECCeEEEE
Confidence 467899999999999999999999999999999999875 5999999999999999999 8887 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99887643
No 151
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.1e-17 Score=127.76 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=74.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.++++|||+|||..+++++|+++|++||.|..+.++.++. +|||||+|.+.++|.+|+..|||..+.|+.|+|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999986532 789999999999999999999999999999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+++.-
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87654
No 152
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-17 Score=124.84 Aligned_cols=79 Identities=15% Similarity=0.330 Sum_probs=72.0
Q ss_pred CCCcceEEecCCCC-CCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 351 CSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 351 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.+++++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 35679999999998 99999999999999999999995 88999999999999999999999999999999999987
Q ss_pred cccc
Q 013749 430 QSIR 433 (437)
Q Consensus 430 ~~~~ 433 (437)
+.-.
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6544
No 153
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=125.60 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCee-EEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcE----E
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV-NTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSI----I 422 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~----l 422 (437)
.++++|||+|||.++++++|+++|++||.|. .++++.++ .+|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99998764 2689999999999999999999999999999 9
Q ss_pred EEEeccCcc
Q 013749 423 RISFSQLQS 431 (437)
Q Consensus 423 ~v~~s~~~~ 431 (437)
+|+||++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 154
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.4e-17 Score=131.97 Aligned_cols=81 Identities=23% Similarity=0.297 Sum_probs=74.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++++|||+|||.++++++|+++|++||.|..++++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999998653 478999999999999999999999999999999999
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98753
No 155
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.2e-17 Score=126.70 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.++++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+.|+.|+|+|++++.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 456899999999999999999999999999999997 8999999999999999999999999999999999999875
Q ss_pred cc
Q 013749 432 IR 433 (437)
Q Consensus 432 ~~ 433 (437)
.+
T Consensus 105 ~r 106 (108)
T 2jvo_A 105 KR 106 (108)
T ss_dssp --
T ss_pred CC
Confidence 43
No 156
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=125.64 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
.++++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR--IVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEe
Confidence 57899999999999999999999999999999999965 699999999999999999999998 899999999999
Q ss_pred ccccc
Q 013749 79 SHQEL 83 (437)
Q Consensus 79 ~~~~~ 83 (437)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87643
No 157
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=2.1e-17 Score=128.84 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=74.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC-CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.++++|||+|||..+++++|+++|++||.|..+.++.+. .+|||||+|.+.++|.+|+..|||..+.|+.|+|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 457899999999999999999999999999999998653 3789999999999999999999999999999999999875
Q ss_pred c
Q 013749 431 S 431 (437)
Q Consensus 431 ~ 431 (437)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 158
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2.4e-17 Score=126.51 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=76.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCcc---CCcEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSL---GGSIIRI 424 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~---~g~~l~v 424 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.++ .+|||||+|.+.++|.+|++.|||..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456899999999999999999999999999999998753 378999999999999999999999998 8999999
Q ss_pred EeccCcccccc
Q 013749 425 SFSQLQSIREN 435 (437)
Q Consensus 425 ~~s~~~~~~~~ 435 (437)
.|++++..+..
T Consensus 91 ~~a~~~~~~~~ 101 (106)
T 2dgp_A 91 KPADSESRGGS 101 (106)
T ss_dssp EECCCCSCCCC
T ss_pred EECCcccccCC
Confidence 99998765543
No 159
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=125.91 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=72.3
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCC-----cEEEEEec
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG-----SIIRISFS 427 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g-----~~l~v~~s 427 (437)
+.++|||+|||+++++++|+++|++||.|..++++.+ +||||+|.+.++|++|++.|||..|.| +.|+|+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 3589999999999999999999999999999999864 999999999999999999999999999 99999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+++.-
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88654
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=126.37 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=72.4
Q ss_pred cCCCcceEEe--cCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCcc-----CCcEE
Q 013749 350 CCSPTKMIHL--STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL-----GGSII 422 (437)
Q Consensus 350 ~~~~~~~l~v--~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~-----~g~~l 422 (437)
...|+++||| +|||.++++++|+++|++||.|.++.+++ ++|||||+|.+.++|++|++.|||+.+ .|++|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3456789999 66999999999999999999999998874 689999999999999999999999988 68999
Q ss_pred EEEeccCccc
Q 013749 423 RISFSQLQSI 432 (437)
Q Consensus 423 ~v~~s~~~~~ 432 (437)
.|.|++.-..
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 9999875443
No 161
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=5.1e-17 Score=126.67 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|++|++.|++. .++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 89 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRT 89 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC--EETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEE
Confidence 357899999999999999999999999999999999987 489999999999999999999988 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987644
No 162
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=1.4e-17 Score=125.08 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
++.++|||+|||.++++++|+++|++||.|..+.++.++. +|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4468999999999999999999999999998887776532 789999999999999999999999999999999998
Q ss_pred cC
Q 013749 428 QL 429 (437)
Q Consensus 428 ~~ 429 (437)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=124.05 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=73.7
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEE-EEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+++|||+|||+++++++|+++|++||.|..++ ++.++..+.|||+|.+.++|.+|++.|||..+.|+.|+|++++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 358899999999999999999999999999994 7776666679999999999999999999999999999999999985
Q ss_pred c
Q 013749 432 I 432 (437)
Q Consensus 432 ~ 432 (437)
.
T Consensus 94 ~ 94 (96)
T 2e44_A 94 A 94 (96)
T ss_dssp S
T ss_pred c
Confidence 4
No 164
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=122.57 Aligned_cols=78 Identities=24% Similarity=0.343 Sum_probs=72.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhcc--CCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
..+.++|||+|||..+++++|+++|++| |.|..+++. ++||||+|.+.++|.+|+..|||..+.|+.|+|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 3457899999999999999999999999 999999885 7899999999999999999999999999999999999
Q ss_pred Cccc
Q 013749 429 LQSI 432 (437)
Q Consensus 429 ~~~~ 432 (437)
++.-
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 165
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=124.70 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccC-----eEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRG-----RNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g-----~~l~v~~ 77 (437)
.+.++|||+|||.++|+++|+++|++||.|.+|.|+++ |||||+|.+.++|++|++.|++. .+.| +.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE--EEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC--CccCCcCcceEEEEEe
Confidence 35689999999999999999999999999999999999 99999999999999999999998 8999 9999999
Q ss_pred cccccc
Q 013749 78 SSHQEL 83 (437)
Q Consensus 78 s~~~~~ 83 (437)
+.++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987543
No 166
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=125.33 Aligned_cols=81 Identities=28% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC-----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.+.++|||+|||.++++++|+++|++|| |..+.++.++. +|||||+|.+.++|++|+ .||+..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 99999986642 789999999999999999 9999999999999999
Q ss_pred ccCccccc
Q 013749 427 SQLQSIRE 434 (437)
Q Consensus 427 s~~~~~~~ 434 (437)
++++..+.
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887654
No 167
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=126.60 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=74.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-------CCeEEEEecChhHHHHHHHhh-ccCCCcccCeEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFY-TNVQPTIRGRNV 73 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-------~~~afV~F~~~~~A~~a~~~~-~~~~~~~~g~~l 73 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ++. .+.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST--HLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC--BSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC--eECCCEE
Confidence 357799999999999999999999999999999999987 699999999999999999999 888 8999999
Q ss_pred EEEecccccc
Q 013749 74 YVQFSSHQEL 83 (437)
Q Consensus 74 ~v~~s~~~~~ 83 (437)
.|.|+.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987643
No 168
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=126.75 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=74.5
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||+|||..+++++|+++|++||.|..+.++.++. +|||||+|.+.++|++|++.|||..+.|+.|+|+|+++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 48899999999999999999999999999999997642 78999999999999999999999999999999999998
Q ss_pred cccc
Q 013749 430 QSIR 433 (437)
Q Consensus 430 ~~~~ 433 (437)
+..+
T Consensus 88 ~~~~ 91 (104)
T 1p1t_A 88 EKNK 91 (104)
T ss_dssp TTHH
T ss_pred ccch
Confidence 7654
No 169
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=124.91 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=70.7
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
+.++|||+|||+++|+++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|+. +||..+.|+.|.|.+++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 35889999999999999999999999999999998754 38899999999999999998 999999999999999765
No 170
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=126.16 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=73.1
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcccc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 433 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~~ 433 (437)
++|||+|||.++|+++|+++|++||.|..+.++.+ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999875 6899999999999999999999999999999999999887643
No 171
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=126.53 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=73.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEE
Confidence 356799999999999999999999999999999999977 699999999999999999999998 89999999999
Q ss_pred cccc
Q 013749 78 SSHQ 81 (437)
Q Consensus 78 s~~~ 81 (437)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 172
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=3.7e-17 Score=125.27 Aligned_cols=78 Identities=27% Similarity=0.439 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccC---eEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRG---RNVY 74 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g---~~l~ 74 (437)
+++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.| ++|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS--QTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC--CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC--ccCCCCCccEE
Confidence 57899999999999999999999999999999999987 699999999999999999999998 7777 9999
Q ss_pred EEeccccc
Q 013749 75 VQFSSHQE 82 (437)
Q Consensus 75 v~~s~~~~ 82 (437)
|.|+..+.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99988764
No 173
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=7e-17 Score=130.49 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|+.||.|.+++++.++. +|||||+|.+.++|.+|++.|||..|.|+.|+|+|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999997753 789999999999999999999999999999999999
Q ss_pred cCccccc
Q 013749 428 QLQSIRE 434 (437)
Q Consensus 428 ~~~~~~~ 434 (437)
+++..+.
T Consensus 120 ~~~~~~~ 126 (139)
T 1u6f_A 120 ASGHQRP 126 (139)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 174
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2e-17 Score=129.64 Aligned_cols=78 Identities=18% Similarity=0.343 Sum_probs=71.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.++.++|||+|||.++++++|+++|++||.|..++++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3567999999999999999999999999999999998653 378999999999999999999999999999999999
Q ss_pred cc
Q 013749 427 SQ 428 (437)
Q Consensus 427 s~ 428 (437)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 175
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=124.45 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=72.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+..++|||+|||..+++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345889999999999999999999999999887776553 2789999999999999999999999999999999999
Q ss_pred cCcc
Q 013749 428 QLQS 431 (437)
Q Consensus 428 ~~~~ 431 (437)
+.+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 176
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=5.7e-17 Score=123.65 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|++|| |..+.++.++. +|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 99999997643 789999999999999999 99999999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887654
No 177
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.7e-17 Score=121.20 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=71.1
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||+|||.++++++|+++|++||.|..+.++.++ .+|+|||+|.+.++|++|+ .|||..+.|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4789999999999999999999999999999998763 3789999999999999999 9999999999999999987
Q ss_pred c
Q 013749 430 Q 430 (437)
Q Consensus 430 ~ 430 (437)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 178
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=124.08 Aligned_cols=78 Identities=13% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~-----~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.++++|||+|||.++|+++|+++|++||.|.+|.+++++ |||||+|.+.++|.+|++.|++. .++|++|.|.|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM--TIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 567999999999999999999999999999999999864 99999999999999999999988 89999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87753
No 179
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-17 Score=123.49 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++++++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF--GYDHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC--EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEE
Confidence 356899999999999999999999999999999999976 379999999999999999999998 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.|+.++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9988754
No 180
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=120.55 Aligned_cols=77 Identities=21% Similarity=0.397 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ ||||+|.+.++|.+|++.|++. .+.|+.|.|.|+.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNT--EFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTE--EETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEEccCC
Confidence 467899999999999999999999999999999999965 9999999999999999999988 899999999998775
Q ss_pred c
Q 013749 82 E 82 (437)
Q Consensus 82 ~ 82 (437)
.
T Consensus 83 ~ 83 (92)
T 2dgt_A 83 L 83 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 181
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=123.24 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=71.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.+++++|||+|||+++++++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|++|.|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI--RLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC--EECCCEEEEE
Confidence 357899999999999999999999999999999999987 589999999999999999999998 8999999999
Q ss_pred eccc
Q 013749 77 FSSH 80 (437)
Q Consensus 77 ~s~~ 80 (437)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9753
No 182
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=124.62 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~ 88 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA--ELDGRELRVQ 88 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC--CBTTBCCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEE
Confidence 56799999999999999999999999999999999875 489999999999999999999998 8999999999
Q ss_pred eccccc
Q 013749 77 FSSHQE 82 (437)
Q Consensus 77 ~s~~~~ 82 (437)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 988753
No 183
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=123.19 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCccCcHHHHH----HhccCCccceEEEEEcc---CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLL----QLFQPFGVITKLVMLRA---KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~----~~f~~~G~i~~v~i~~~---~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.+.++|||+|||.++++++|+ ++|++||+|.+|.++++ +|||||+|.+.++|.+|++.+|+. .++|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~--~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY--KIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE--EETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEE
Confidence 456899999999999999999 99999999999999977 799999999999999999999998 899999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.++.+.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998765
No 184
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=8.1e-17 Score=127.25 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.++++|||+|||..+++++|+++|++||.|..++++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|+||.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 456899999999999999999999999999999998754 47899999999999999999999999999999999999
Q ss_pred Ccccccc
Q 013749 429 LQSIREN 435 (437)
Q Consensus 429 ~~~~~~~ 435 (437)
+....+.
T Consensus 113 ~~~~~~~ 119 (124)
T 2kt5_A 113 SQIDLEH 119 (124)
T ss_dssp CTTCCCC
T ss_pred CCCCCCC
Confidence 8766543
No 185
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.6e-17 Score=125.37 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=74.7
Q ss_pred CCcceEEecCCCCCCCHHHHH----HhhhccCCeeEEEEEee-CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 352 SPTKMIHLSTLPQDVTEEEIV----SHLEEHGSIVNTKLFEM-NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~-~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
+++++|||+|||.++++++|+ ++|++||.|..+.+... +.+|||||+|.+.++|.+|++.|||..+.|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 567999999999999999999 99999999999998732 2378999999999999999999999999999999999
Q ss_pred ccCcccc
Q 013749 427 SQLQSIR 433 (437)
Q Consensus 427 s~~~~~~ 433 (437)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987644
No 186
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=127.14 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.++ .++||||+|.+.++|++|++.+|+ .|.|+.|+|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 456899999999999999999999999999999998753 378999999999999999999999 899999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+.+...
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 776543
No 187
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=5.2e-17 Score=122.08 Aligned_cols=76 Identities=18% Similarity=0.382 Sum_probs=71.2
Q ss_pred CCCceEEEEcCCCc-cCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
.+++++|||+|||. ++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.+++. .++|+.|.|.|+..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQE--MNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTS--EETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecCC
Confidence 57889999999998 99999999999999999999984 789999999999999999999998 89999999999876
Q ss_pred c
Q 013749 81 Q 81 (437)
Q Consensus 81 ~ 81 (437)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 188
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=123.41 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCcce--EEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceE-EEEEecCHHHHHHHHHHhCCCccCC--cEEEEEe
Q 013749 352 SPTKM--IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ-ALVLFETEEQATEALVCKHASSLGG--SIIRISF 426 (437)
Q Consensus 352 ~~~~~--l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~ 426 (437)
+|+++ |||+|||+.+|+++|+++|++||.|.+++++.. .|+ |||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 45555 569999999999999999999999999999763 485 9999999999999999999999987 6999999
Q ss_pred ccCccc
Q 013749 427 SQLQSI 432 (437)
Q Consensus 427 s~~~~~ 432 (437)
|+++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 998864
No 189
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=128.12 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=75.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCe----eEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSI----VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.++++|||+|||.++|+++|+++|++||.| ..+++...+.+|||||+|.+.++|.+|++.|||..+.|+.|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 467999999999999999999999999999 6677765566899999999999999999999999999999999999
Q ss_pred cCccccc
Q 013749 428 QLQSIRE 434 (437)
Q Consensus 428 ~~~~~~~ 434 (437)
+++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 9876554
No 190
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=125.58 Aligned_cols=81 Identities=15% Similarity=0.329 Sum_probs=74.8
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~-----~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
..++++|||+|||.++|+++|+++|++||.|.+|.+++++ |||||+|.+.++|.+|++.|++. .++|+.|.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK--SLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC--BCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEE
Confidence 3567999999999999999999999999999999999874 99999999999999999999998 8999999999
Q ss_pred eccccccc
Q 013749 77 FSSHQELT 84 (437)
Q Consensus 77 ~s~~~~~~ 84 (437)
|+.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 191
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=125.37 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.+++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|++|.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V 100 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF--ELAGRPMKV 100 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEE
Confidence 467899999999999999999999999999999999976 489999999999999999999998 899999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 192
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=125.59 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=75.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||..+++++|+++|++||.|..++++.++. +|||||+|.+.++|++|++. |+..|.|+.|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4568999999999999999999999999999999997632 68999999999999999999 999999999999999
Q ss_pred cCcccccc
Q 013749 428 QLQSIREN 435 (437)
Q Consensus 428 ~~~~~~~~ 435 (437)
+++.....
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98876543
No 193
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=4.4e-17 Score=127.01 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=73.5
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
+++++|||+|||.++++++|+++|++||.|.+|+|++++ |||||+|.+.++|.+|++.|++. .++|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 100 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF--QIGMKRLKVQ 100 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC--EECCEEEEEE
Confidence 567999999999999999999999999999999999874 89999999999999999999998 8999999999
Q ss_pred ecccccc
Q 013749 77 FSSHQEL 83 (437)
Q Consensus 77 ~s~~~~~ 83 (437)
|+.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9887643
No 194
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=5e-17 Score=123.91 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
.++++|||+|||+++|+++|+++|++||.|.+|.+++ +||||+|.+.++|.+|++.|++. .+.|+.|.|.|+.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--DYAFIHFDERDGAVKAMEEMNGK--DLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCC--ccCCCEEEEEEcCCCc
Confidence 5679999999999999999999999999999999984 59999999999999999999988 8999999999998765
Q ss_pred cc
Q 013749 83 LT 84 (437)
Q Consensus 83 ~~ 84 (437)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 195
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=134.12 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=73.5
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccC--CeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++|||+|||+++|+++|+++|++|| .|..++++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 358999999999999999999999999 99999998763 278999999999999999999999999999999999
Q ss_pred ccCcccc
Q 013749 427 SQLQSIR 433 (437)
Q Consensus 427 s~~~~~~ 433 (437)
++++..+
T Consensus 134 a~~~~~~ 140 (156)
T 3n9u_C 134 ATRQNLS 140 (156)
T ss_dssp CCHHHHH
T ss_pred cCCCcch
Confidence 9876543
No 196
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=122.15 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=71.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCC-eeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCC-CccCCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS-IVNTKLFEMNGKKQALVLFETEEQATEALVCKHA-SSLGGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~~s~~ 429 (437)
.+.++|||+|||.++|+++|+++|++||. |..+.+. .++||||+|.+.++|++|++.||| ..+.|+.|+|+|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 34688999999999999999999999999 6666663 488999999999999999999999 999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+..+.
T Consensus 83 ~~~~~ 87 (93)
T 2cqh_A 83 KKLRS 87 (93)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 76554
No 197
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=6e-17 Score=124.23 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=71.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
..++++|||+|||.++|+++|+++|++||.|.+|.++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.|+.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK--SFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEecCC
Confidence 3577999999999999999999999999999999999 899999999999999999999998 899999999998765
No 198
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-18 Score=123.17 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+++++|||+|||.++++++|+++|++||.|..+.++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4568999999999999999999999999999999987632 789999999999999999999999999999998876
Q ss_pred cC
Q 013749 428 QL 429 (437)
Q Consensus 428 ~~ 429 (437)
.+
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 199
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1.8e-16 Score=123.66 Aligned_cols=90 Identities=24% Similarity=0.433 Sum_probs=77.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCe-EEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEccCCC
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH-ALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSKHPN 321 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~-~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~ 321 (437)
..|||+||+. .+|+++|+++|++||.|.+|.+..+.+|+ |||+|.+.++|..|++.|||..+.| +.|+|+|++...
T Consensus 29 L~I~V~NL~~-~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFY-PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCS-CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCC-CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4788999998 69999999999999999999988766777 9999999999999999999999988 899999999876
Q ss_pred C---CCCCCccccccCC
Q 013749 322 I---TQGADTHEYMNSN 335 (437)
Q Consensus 322 ~---~~~~~~~~~~~~~ 335 (437)
. ..+..+.||+++.
T Consensus 108 l~v~~n~~~srDyt~~~ 124 (130)
T 3zzy_A 108 LNVKYNNDKSRDYTRPD 124 (130)
T ss_dssp CCCCCCSSSEEETTCTT
T ss_pred eeEEecCCCcccCCCCC
Confidence 5 2334555666543
No 200
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=125.95 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCee--------EEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--------NTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGG 419 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g 419 (437)
.+.++|||+|||.++++++|+++|++||.|. .++++.++ .+|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 68988763 27899999999999999999999999999
Q ss_pred cEEEEEeccCcccc
Q 013749 420 SIIRISFSQLQSIR 433 (437)
Q Consensus 420 ~~l~v~~s~~~~~~ 433 (437)
+.|+|++++++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999987654
No 201
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=119.73 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=73.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.++|||+|| ++|+++|+++|++||.|..+.+. +.++||||+|.+.++|.+|+..|||..+.|+.|+|+|++++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 45689999996 89999999999999999999995 578999999999999999999999999999999999999887
Q ss_pred ccccC
Q 013749 432 IRENS 436 (437)
Q Consensus 432 ~~~~~ 436 (437)
.....
T Consensus 89 ~~~~~ 93 (97)
T 1x5p_A 89 MLDSG 93 (97)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 65543
No 202
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=120.94 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=74.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||..+++++|+++|++||.|..+.++.++. +|||||+|.+.++|++|++ ++..+.|+.|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4568999999999999999999999999999999987642 7899999999999999998 577899999999999
Q ss_pred cCccccccC
Q 013749 428 QLQSIRENS 436 (437)
Q Consensus 428 ~~~~~~~~~ 436 (437)
+++.....+
T Consensus 91 ~~~~~~~~~ 99 (103)
T 2cqg_A 91 NSKQSQDSG 99 (103)
T ss_dssp CTTCCCCCS
T ss_pred CCCCcCCCC
Confidence 998766543
No 203
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=1.3e-16 Score=117.67 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=68.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.++. +|||||+|.+.++|.+|+ .+++..+.|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 4568999999999999999999999999999999987643 789999999999999999 45888999999999986
No 204
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=6.6e-17 Score=128.24 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=75.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.++++|||+|||..+|+++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++.|||..|.|+.|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 456899999999999999999999999999999998663 2789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 205
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=120.82 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
..++++|||+|||.++|+++|+++|++||.|.+|.++++ ||||+|.+.++|.+|++.|++. .++|+.|.|.|+.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGK--EVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEECCCC
Confidence 467899999999999999999999999999999999965 9999999999999999999998 899999999998875
Q ss_pred c
Q 013749 82 E 82 (437)
Q Consensus 82 ~ 82 (437)
.
T Consensus 82 ~ 82 (90)
T 2dnp_A 82 Q 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=4.7e-17 Score=122.72 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHH----HhccCCccceEEEEEc---cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLL----QLFQPFGVITKLVMLR---AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~----~~f~~~G~i~~v~i~~---~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
.+|+++|||+|||.++++++|+ ++|++||.|.+|.+.+ .+|||||+|.+.++|.+|++.+++. .++|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF--PFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC--EECCcEEE
Confidence 4688999999999999999999 9999999999999984 4799999999999999999999998 89999999
Q ss_pred EEeccccc
Q 013749 75 VQFSSHQE 82 (437)
Q Consensus 75 v~~s~~~~ 82 (437)
|.|+.++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99988753
No 207
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=125.37 Aligned_cols=78 Identities=29% Similarity=0.323 Sum_probs=70.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC-----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
.+.++|||+|||.++++++|+++|++|| |.+++++.++ .+|||||+|.+.++|.+|+ .|||..+.|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568999999999999999999999999 9999998764 2789999999999999999 9999999999999999
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98763
No 208
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=119.29 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEc-------cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR-------AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~-------~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..+++|||+|||.++|+++|+++|++||.|.+|.+++ .+|||||+|.+.++|.+|++.+++. .++|+.|.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v 79 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG--QIDGQEITA 79 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC--eECCeEEEE
Confidence 4678999999999999999999999999999999975 4689999999999999999999998 899999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.++.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998654
No 209
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=124.46 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC--EECCcEEEEE
Confidence 46789999999999999999999999999999999976 489999999999999999999998 8999999999
Q ss_pred ecccc
Q 013749 77 FSSHQ 81 (437)
Q Consensus 77 ~s~~~ 81 (437)
|+.++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98764
No 210
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-17 Score=125.14 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhc------cCCCccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYT------NVQPTIR 69 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~------~~~~~~~ 69 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.++ +. .++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~--~~~ 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL--KLD 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE--ESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc--EEc
Confidence 357899999999999999999999999999999999965 5899999999999999999998 66 899
Q ss_pred CeEEEEEeccccc
Q 013749 70 GRNVYVQFSSHQE 82 (437)
Q Consensus 70 g~~l~v~~s~~~~ 82 (437)
|+.|.|.|+.++.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999988764
No 211
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.1e-17 Score=121.67 Aligned_cols=77 Identities=19% Similarity=0.403 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCCc-cCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~-~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
.+|+++|||+|||. ++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.|++. .+.|++|.|.|+..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQE--MNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCS--SCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEEEcCc
Confidence 36889999999998 99999999999999999999996 789999999999999999999998 89999999999876
Q ss_pred cc
Q 013749 81 QE 82 (437)
Q Consensus 81 ~~ 82 (437)
..
T Consensus 83 ~~ 84 (96)
T 2kvi_A 83 NA 84 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 212
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=9e-17 Score=118.60 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=72.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
..++++|||+|||+++++++|+++|++| .|.++.+.+.+|||||+|.+.++|.+|++.+++. .++|++|+|.|+..+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY--SFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE--EETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEEEcCCC
Confidence 3578999999999999999999999999 9999999888999999999999999999999988 899999999998765
Q ss_pred c
Q 013749 82 E 82 (437)
Q Consensus 82 ~ 82 (437)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 4
No 213
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=121.95 Aligned_cols=76 Identities=21% Similarity=0.478 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceE--------EEEEcc------CCeEEEEecChhHHHHHHHhhccCCCc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITK--------LVMLRA------KNQALLQMQDVPSAINALQFYTNVQPT 67 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~--------v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~ 67 (437)
.++.++|||+|||.++++++|+++|++||.|.+ |+++++ +|||||+|.+.++|.+|++.|++. .
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~--~ 87 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK--E 87 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC--B
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC--E
Confidence 467899999999999999999999999999999 999876 489999999999999999999998 8
Q ss_pred ccCeEEEEEecc
Q 013749 68 IRGRNVYVQFSS 79 (437)
Q Consensus 68 ~~g~~l~v~~s~ 79 (437)
++|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999864
No 214
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=4.6e-17 Score=121.46 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM--KLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC--CBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEE
Confidence 467899999999999999999999999999999999974 599999999999999999999998 89999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87753
No 215
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=7e-17 Score=124.21 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|++||.|..++++.++ .+|||||+|.+.++|.+|++.+ +..++|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 346899999999999999999999999999999998764 2789999999999999999876 58999999999999
Q ss_pred cCccccc
Q 013749 428 QLQSIRE 434 (437)
Q Consensus 428 ~~~~~~~ 434 (437)
.++..++
T Consensus 102 ~~~~~~~ 108 (109)
T 2rs2_A 102 FPRRAQP 108 (109)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9887654
No 216
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=122.69 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhcc-CCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN-VQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~-~~~~~~g~~l~v~~s~~ 80 (437)
..++++|||+|||.++|+++|+++|++||.|+...++..+|||||+|.+.++|.+|++.|++ . .++|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKV--ELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTC--EETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCe--eECCEEEEEEEccC
Confidence 46789999999999999999999999999944444446789999999999999999999998 6 89999999999887
Q ss_pred cc
Q 013749 81 QE 82 (437)
Q Consensus 81 ~~ 82 (437)
+.
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 217
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-17 Score=121.11 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
++++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.|+.+++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~ 79 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS--GVQAQMAKQ 79 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH--TCCEESCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC--eEeeEEEee
Confidence 678999999999999999999999999999999999976 589999999999999999999998 889988887
Q ss_pred Eec
Q 013749 76 QFS 78 (437)
Q Consensus 76 ~~s 78 (437)
.++
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 218
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=121.55 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.++++|||+|||.++++++|+++|++|| |.+|.++++ +|||||+|.+.++|.+|+ .+++. .++|+.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE--SLGNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC--EETTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC--EeCCcEEEE
Confidence 5789999999999999999999999999 999999865 589999999999999999 89988 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.++.++..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99887643
No 219
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=123.87 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=71.2
Q ss_pred CcceEEecCCCCCC------CHHHHHHhhhccCCeeEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCc-EEE
Q 013749 353 PTKMIHLSTLPQDV------TEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS-IIR 423 (437)
Q Consensus 353 ~~~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~ 423 (437)
.+++|||+|||..+ |+++|+++|++||.|..+.+++..+ +|||||+|.+.++|.+|+..|||..+.|+ .|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 35899999999999 7899999999999999999985433 78999999999999999999999999998 999
Q ss_pred EEeccCc
Q 013749 424 ISFSQLQ 430 (437)
Q Consensus 424 v~~s~~~ 430 (437)
|+++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9999754
No 220
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=123.40 Aligned_cols=78 Identities=12% Similarity=0.269 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccce-EEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeE--
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVIT-KLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRN-- 72 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~-~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~-- 72 (437)
..++++|||+|||+++++++|+++|++||.|. +|++++++ |||||+|.+.++|++|++.|++. .+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK--PLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS--EESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC--ccCCCCcc
Confidence 46889999999999999999999999999999 99999874 89999999999999999999988 899999
Q ss_pred --EEEEecccc
Q 013749 73 --VYVQFSSHQ 81 (437)
Q Consensus 73 --l~v~~s~~~ 81 (437)
|+|.|+.+.
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998765
No 221
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=8.4e-17 Score=124.34 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|++. .++|+.|.|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 101 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA--EIMGQTIQVD 101 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEE
Confidence 56799999999999999999999999999999999876 499999999999999999999998 8999999999
Q ss_pred ecccc
Q 013749 77 FSSHQ 81 (437)
Q Consensus 77 ~s~~~ 81 (437)
|+.++
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 98765
No 222
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=124.83 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccC-CccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCc-ccCeEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQP-FGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPT-IRGRNVY 74 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~-~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~-~~g~~l~ 74 (437)
..++++|||+|||.++|+++|+++|++ ||.|.+|.++++ +|||||+|.+.++|.+|++.+++. . ++|++|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA--VGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC--CSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC--cccCCEeEE
Confidence 467899999999999999999999999 999999999986 699999999999999999999988 7 9999999
Q ss_pred EEecccccc
Q 013749 75 VQFSSHQEL 83 (437)
Q Consensus 75 v~~s~~~~~ 83 (437)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999877543
No 223
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.1e-16 Score=122.97 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=71.3
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
..++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.|+.|.|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV--PLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEE
Confidence 357899999999999999999999999999999999976 589999999999999999999998 8999999999
Q ss_pred ecc
Q 013749 77 FSS 79 (437)
Q Consensus 77 ~s~ 79 (437)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 224
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=116.87 Aligned_cols=77 Identities=23% Similarity=0.478 Sum_probs=70.7
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
.++.++|||+|||. .+++++|+++|++||.|..+.+..+. +|+|||+|.+.++|..|++.|||..+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPF-SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCT-TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34556999999998 69999999999999999999998753 6899999999999999999999999999999999
Q ss_pred Ecc
Q 013749 316 FSK 318 (437)
Q Consensus 316 ~~~ 318 (437)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 225
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=7.7e-17 Score=118.97 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=71.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
+++|||+|||.++++++|+++|++| .|..+++. +.+|||||+|.+.++|++|++.|||..+.|++|+|+|++.+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 5789999999999999999999999 99999885 5789999999999999999999999999999999999987653
No 226
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2e-16 Score=130.45 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=74.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++|+++|+++|++||.|..|.|+.++. ++||||+|.+.++|++|++.||+..|.|+.|+|+||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999987642 689999999999999999999999999999999999
Q ss_pred cCcc
Q 013749 428 QLQS 431 (437)
Q Consensus 428 ~~~~ 431 (437)
++..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 227
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.1e-17 Score=123.45 Aligned_cols=78 Identities=27% Similarity=0.313 Sum_probs=69.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee---CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+.++|||+|||.++++++|+++|++||.| +++.+ +.+|||||+|.+.++|++|++.|||..|.|+.|+|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999988 34433 347899999999999999999999999999999999998
Q ss_pred Cccc
Q 013749 429 LQSI 432 (437)
Q Consensus 429 ~~~~ 432 (437)
++.-
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 228
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=122.72 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.+++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ--LLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEE
Confidence 357899999999999999999999999999999999987 589999999999999999999998 8999999999
Q ss_pred ecccc
Q 013749 77 FSSHQ 81 (437)
Q Consensus 77 ~s~~~ 81 (437)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98754
No 229
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-16 Score=117.30 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=73.7
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~---~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
..+.++|||+|||. .+++++|+++|++||.|..|++..+. +|||||+|.+.++|..|+..|+|..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSR-DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCT-TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCc-cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 44567999999998 69999999999999999999998854 789999999999999999999999999999999999
Q ss_pred cCCC
Q 013749 318 KHPN 321 (437)
Q Consensus 318 ~~~~ 321 (437)
+...
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8764
No 230
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=117.34 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
..++|||+|||.++++++|+++|++| .|..+.++.+.. +|+|||+|.+.++|++|++ |||..|.|+.|.|.+|++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45899999999999999999999999 999999987632 7899999999999999999 999999999999999987
Q ss_pred cc
Q 013749 430 QS 431 (437)
Q Consensus 430 ~~ 431 (437)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 231
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=127.37 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=71.8
Q ss_pred CCCceEEEEcCCCccCcHHHHH----HhccCCccceEEEEEc---cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLL----QLFQPFGVITKLVMLR---AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~----~~f~~~G~i~~v~i~~---~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
.+|+++|||+|||+.+++++|+ ++|++||.|.+|.+.+ .+|||||+|.+.++|.+|++.|++. .+.|++|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~--~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY--PFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC--CCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC--EeCCCEEE
Confidence 3578999999999999999876 6999999999999875 3699999999999999999999998 89999999
Q ss_pred EEeccccc
Q 013749 75 VQFSSHQE 82 (437)
Q Consensus 75 v~~s~~~~ 82 (437)
|.|+..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99988754
No 232
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=119.37 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=65.0
Q ss_pred ceEEecCCCCCC------CHHHHHHhhhccCCeeEEEEEeeCC--ceEEEEEecCHHHHHHHHHHhCCCccCCc-EEEEE
Q 013749 355 KMIHLSTLPQDV------TEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS-IIRIS 425 (437)
Q Consensus 355 ~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~ 425 (437)
++|||+|||..+ ++++|+++|++||.|.++.+++..+ +|||||+|.+.++|.+|++.|||..+.|+ +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 689999999999 7899999999999999999885433 78999999999999999999999999999 88763
No 233
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=123.47 Aligned_cols=82 Identities=7% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCcc-ceEEEEE-------ccCCeEEEEecChhHHHHHHHhhccCCCcccCeEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGV-ITKLVML-------RAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~-i~~v~i~-------~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l 73 (437)
+.++++|||+|||.++|+++|+++|++||. |.+|.++ +.+|||||+|.+.++|.+|++.|+.....++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999999 9999998 44699999999999999999999622128999999
Q ss_pred EEEecccccc
Q 013749 74 YVQFSSHQEL 83 (437)
Q Consensus 74 ~v~~s~~~~~ 83 (437)
.|.|+.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987644
No 234
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=122.43 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=72.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCcc--------CCc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSL--------GGS 420 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~--------~g~ 420 (437)
.+.++|||+|||..+++++|+++|++||.|..++++.++. +|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4568999999999999999999999999999999987632 78999999999999999999999999 588
Q ss_pred EEEEEeccCc
Q 013749 421 IIRISFSQLQ 430 (437)
Q Consensus 421 ~l~v~~s~~~ 430 (437)
+|.|.|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 235
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=9.9e-17 Score=123.86 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCcceEEecCCCCC-CCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 352 SPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 352 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
+++++|||+|||.. +++++|+++|++||.|..+.+ .++||||+|.+.++|++|++.|||..+.|+.|+|+|++.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 44689999999999 999999999999999999999 4899999999999999999999999999999999999854
Q ss_pred c
Q 013749 431 S 431 (437)
Q Consensus 431 ~ 431 (437)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 236
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.4e-17 Score=122.57 Aligned_cols=76 Identities=11% Similarity=0.255 Sum_probs=70.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
..++++|||+|||+++|+++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|+. +++. .++|+.|.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~--~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQ--KYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCC--CCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCC--EECCEEEEEE
Confidence 456799999999999999999999999999999999975 5999999999999999999 7777 8999999999
Q ss_pred eccc
Q 013749 77 FSSH 80 (437)
Q Consensus 77 ~s~~ 80 (437)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8654
No 237
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=6.8e-17 Score=121.56 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=70.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.+.++|||+|||..+++++|+++|++||.|..+ ......+|||||+|.+.++|.+|++.|||..+.|+.|+|+|++++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 346899999999999999999999999999877 2222338899999999999999999999999999999999998765
Q ss_pred c
Q 013749 432 I 432 (437)
Q Consensus 432 ~ 432 (437)
-
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 238
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-17 Score=125.56 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR--EFSGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB--SCSSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEE
Confidence 45789999999999999999999999999999999976 599999999999999999999988 8999999999
Q ss_pred ecccccc
Q 013749 77 FSSHQEL 83 (437)
Q Consensus 77 ~s~~~~~ 83 (437)
|+.++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9887543
No 239
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.1e-16 Score=122.77 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcc---cCeE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTI---RGRN 72 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~---~g~~ 72 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+ .|++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~~g~~ 87 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ--KTLPGMNRP 87 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT--CCCTTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC--cccCCCCce
Confidence 467899999999999999999999999999999999985 489999999999999999999988 55 8999
Q ss_pred EEEEeccccc
Q 013749 73 VYVQFSSHQE 82 (437)
Q Consensus 73 l~v~~s~~~~ 82 (437)
|.|.|+..+.
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999988754
No 240
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=119.17 Aligned_cols=77 Identities=17% Similarity=0.329 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCC--ccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPF--GVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~--G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
.+++++|||+|||.++|+++|+++|++| |.|.+|.+. +|||||+|.+.++|.+|+..|++. .++|+.|.|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGK--VLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE--EETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECC
Confidence 3578999999999999999999999999 889888876 579999999999999999999998 8999999999988
Q ss_pred ccc
Q 013749 80 HQE 82 (437)
Q Consensus 80 ~~~ 82 (437)
++.
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 241
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.1e-17 Score=122.75 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=68.2
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.+ |.+|+..|||..+.|+.|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999998653 3789999999999 99999999999999999999999887
Q ss_pred cccc
Q 013749 431 SIRE 434 (437)
Q Consensus 431 ~~~~ 434 (437)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 242
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.7e-17 Score=126.13 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=72.6
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|+ .|||..|.|+.|+|+|+++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4899999999999999999999999999999998653 3789999999999999999 9999999999999999987
Q ss_pred cccc
Q 013749 430 QSIR 433 (437)
Q Consensus 430 ~~~~ 433 (437)
+...
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 6543
No 243
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=123.25 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccce--------EEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVIT--------KLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTI 68 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~--------~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~ 68 (437)
.++++|||+|||.++|+++|+++|++||.|. +|.++.+ +|||||+|.+.++|.+|++.|++. .+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK--DF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC--EE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC--cc
Confidence 4679999999999999999999999999998 6999876 489999999999999999999998 89
Q ss_pred cCeEEEEEecccccc
Q 013749 69 RGRNVYVQFSSHQEL 83 (437)
Q Consensus 69 ~g~~l~v~~s~~~~~ 83 (437)
+|+.|.|.++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999887643
No 244
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=7.8e-17 Score=123.28 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCc-cceEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G-~i~~v~i~~--~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
+++..+|||+|||++++++||+++|++|| .|..+.+.. .+|||||+|.+.++|.+|++.|++. .++|+.|.|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~--~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI--EFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE--EETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEC
Confidence 35568999999999999999999999999 899999963 4799999999999999999999998 999999999997
Q ss_pred cc
Q 013749 79 SH 80 (437)
Q Consensus 79 ~~ 80 (437)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=122.93 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCC-eeEEEEE-ee----CCceEEEEEecCHHHHHHHHHHhC--CCccCCcEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS-IVNTKLF-EM----NGKKQALVLFETEEQATEALVCKH--ASSLGGSIIR 423 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~-~~----~~~~~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 423 (437)
.+.++|||+|||.++++++|+++|++||. |..+.++ .+ ..+|||||+|.+.++|.+|++.|| +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999997 33 347899999999999999999996 5899999999
Q ss_pred EEeccCccc
Q 013749 424 ISFSQLQSI 432 (437)
Q Consensus 424 v~~s~~~~~ 432 (437)
|+|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998765
No 246
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=117.38 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=63.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCcc--CCcEEEEEeccC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL--GGSIIRISFSQL 429 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~~s~~ 429 (437)
++..+|||+|||+++|+++|+++|++||.|.+++++.+ .+|||||+|.+.++|.+ +++..+ .|+.|.|.+|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 45689999999999999999999999999999999864 79999999999999983 566655 499999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+..+.
T Consensus 84 k~~~~ 88 (89)
T 3d2w_A 84 KHNKL 88 (89)
T ss_dssp -----
T ss_pred CCcCC
Confidence 87654
No 247
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.2e-16 Score=119.43 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++++++|+++|++|| |.+|.++++ +|||||+|.+.++|.+|+ .|++. .+.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA--LLGDRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC--EETTEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC--eECCeEEEE
Confidence 46789999999999999999999999997 999999977 379999999999999999 79988 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.|+.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9988754
No 248
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6.1e-17 Score=115.72 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=66.1
Q ss_pred eEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 356 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+|||+|||.++++++|+++|++||.|..+.++.++ .+|+|||+|.+.++|++|++ |||..+.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999998664 27899999999999999997 9999999999999986
No 249
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=1.4e-16 Score=118.09 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=70.1
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+ .+++. .++|+.|.|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~--~~~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES--LFRGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC--EETTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC--EECCcEEEEEE
Confidence 5689999999999999999999999999999999976 589999999999999999 89988 89999999999
Q ss_pred cccc
Q 013749 78 SSHQ 81 (437)
Q Consensus 78 s~~~ 81 (437)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8653
No 250
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=7.4e-17 Score=127.85 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=72.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..|+++|||+|||+++++++|+++|++||+|.+|.++++ +|||||+|.+.++|++|++.|++. .++|++|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~--~i~g~~l~V 120 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM--ELDGRRIRV 120 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEE
Confidence 467899999999999999999999999999999999865 589999999999999999999998 899999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.|+.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 251
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=113.75 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCCceE-EEEcCCCccCcHHH----HHHhccCC-ccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKV-IHVRNVGHEISEND----LLQLFQPF-GVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~-l~V~~Lp~~~te~~----l~~~f~~~-G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.+|+.| |||+|||.++++++ |+++|++| |+|.+|. +|+|||.|.+.++|++|++.|++. .+.||+|+|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~--~l~gr~i~v 78 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENE--DVFGNRIIV 78 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCC--ccCCceEEE
Confidence 367777 99999999999988 55899999 5999883 499999999999999999999999 899999999
Q ss_pred Eeccccccc
Q 013749 76 QFSSHQELT 84 (437)
Q Consensus 76 ~~s~~~~~~ 84 (437)
+|++.....
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876543
No 252
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-16 Score=117.64 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
.++++|||+|| ++|+++|+++|++||.|.+|.+.+.+|||||+|.+.++|.+|++.|++. .+.|++|.|.|+.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE--EETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEECCCCC
Confidence 46789999996 8999999999999999999999999999999999999999999999988 8999999999988764
Q ss_pred c
Q 013749 83 L 83 (437)
Q Consensus 83 ~ 83 (437)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=5.4e-17 Score=122.81 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=71.7
Q ss_pred CceEEEEcCCCc------cCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccC-
Q 013749 4 PSKVIHVRNVGH------EISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRG- 70 (437)
Q Consensus 4 ~s~~l~V~~Lp~------~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g- 70 (437)
.+++|||+|||. ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++. .+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~--~~~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK--RLDLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--BSSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc--ccCCC
Confidence 578999999999 9999999999999999999999865 499999999999999999999998 8999
Q ss_pred eEEEEEeccccc
Q 013749 71 RNVYVQFSSHQE 82 (437)
Q Consensus 71 ~~l~v~~s~~~~ 82 (437)
+.|.|.++.+.+
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999987653
No 254
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=122.14 Aligned_cols=78 Identities=9% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..++ . .++|+.|.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~--~l~g~~l~V 98 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H--ELDSKTIDP 98 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-E--EETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-C--cCCCEEEEE
Confidence 457899999999999999999999999999999999876 4899999999999999999764 4 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987653
No 255
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=120.77 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.++.++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|++|++.+++. .++|+.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC--EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEE
Confidence 356799999999999999999999999999988777755 599999999999999999999998 899999999
Q ss_pred Eecccc
Q 013749 76 QFSSHQ 81 (437)
Q Consensus 76 ~~s~~~ 81 (437)
.++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 997653
No 256
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=1.5e-16 Score=126.14 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||+++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|++. .++|+.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC--BSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEE
Confidence 356789999999999999999999999999999999877 699999999999999999999998 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.|+..+.
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9987653
No 257
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.2e-16 Score=120.06 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=68.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
+++++|||+|||++++++||+++|++||.|.++.++++ +|||||+|.+.++|++|++.|++. .++|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEE
Confidence 46799999999999999999999999999988888764 489999999999999999999998 8999999999
Q ss_pred eccc
Q 013749 77 FSSH 80 (437)
Q Consensus 77 ~s~~ 80 (437)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8653
No 258
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=1.7e-16 Score=117.01 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=64.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
.++..+|||+|||+++||++|+++|++||.|.+|.++++ ||||||+|.+.++|.+ +++..+.++|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 467899999999999999999999999999999999986 8999999999999984 34454467899999999877
Q ss_pred cc
Q 013749 81 QE 82 (437)
Q Consensus 81 ~~ 82 (437)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 53
No 259
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=2.2e-16 Score=116.33 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++. ++. .++|+.|.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~--~~~g~~i~v 84 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEH--RLDGRVIDP 84 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCE--EETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCC--EECCEEEEE
Confidence 357899999999999999999999999999999999976 48999999999999999975 555 799999999
Q ss_pred Eec
Q 013749 76 QFS 78 (437)
Q Consensus 76 ~~s 78 (437)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 260
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.2e-16 Score=116.03 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=71.6
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
..+.++|||+|||. .+++++|+++|++||.|..+.+..+. +|+|||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSL-YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCS-SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567999999998 69999999999999999999998753 5799999999999999999999999999999999
Q ss_pred EccC
Q 013749 316 FSKH 319 (437)
Q Consensus 316 ~~~~ 319 (437)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 261
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=118.10 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=69.4
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCccc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 432 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~~ 432 (437)
..++|||+|||.++++++|+++|++||.|.++.+-...++ ||||+|.+.++|.+|++ |||..|.|+.|.|.++..+..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3578999999999999999999999999998822222234 99999999999999999 999999999999999987665
Q ss_pred cc
Q 013749 433 RE 434 (437)
Q Consensus 433 ~~ 434 (437)
+.
T Consensus 85 ~~ 86 (94)
T 2e5g_A 85 QS 86 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 262
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=122.54 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCccCcHHHHH---HhccCCccceEEEEEccC---------CeEEEEecChhHHHHHHHhhccCCCcccC
Q 013749 3 EPSKVIHVRNVGHEISENDLL---QLFQPFGVITKLVMLRAK---------NQALLQMQDVPSAINALQFYTNVQPTIRG 70 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~---~~f~~~G~i~~v~i~~~~---------~~afV~F~~~~~A~~a~~~~~~~~~~~~g 70 (437)
.++++|||+|||+++++++|+ ++|++||+|.+|.+++++ |||||+|.+.++|++|++.|++. .++|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~--~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV--VVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE--EETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC--EECC
Confidence 356899999999999999999 999999999999999764 69999999999999999999998 8999
Q ss_pred eEEEEEeccccc
Q 013749 71 RNVYVQFSSHQE 82 (437)
Q Consensus 71 ~~l~v~~s~~~~ 82 (437)
++|.|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 263
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-15 Score=117.11 Aligned_cols=80 Identities=33% Similarity=0.436 Sum_probs=73.1
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
..+.++|||+|||. .+++++|+++|++||.|..|.+..+. ++||||+|.+.++|..|++.|||..+.|+.|+|.|++
T Consensus 19 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34557999999998 69999999999999999999997754 7899999999999999999999999999999999998
Q ss_pred CCC
Q 013749 319 HPN 321 (437)
Q Consensus 319 ~~~ 321 (437)
...
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 664
No 264
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2.9e-16 Score=124.10 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=72.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||+|||.++|+++|+++|++||.|..+.++.++ .+|||||+|.+.++|.+|+ .|||..|.|+.|+|+|+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5899999999999999999999999999999998763 3789999999999999999 8999999999999999987
Q ss_pred ccc
Q 013749 430 QSI 432 (437)
Q Consensus 430 ~~~ 432 (437)
..-
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 265
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=120.09 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.+.++|||+|||+++|++||+++|++||.| .++|+.++. +|||||+|.+.++|++|+ .+|+..|.||.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 345899999999999999999999999954 898886643 789999999999999999 589999999999999988
Q ss_pred Ccc
Q 013749 429 LQS 431 (437)
Q Consensus 429 ~~~ 431 (437)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.7e-17 Score=115.59 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=67.2
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
++|||+|||.++++++|+++|++||.|..+.++.++. +|+|||+|.+.++|.+|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4699999999999999999999999999999987642 7899999999999999999999 9999999999987
No 267
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=5.6e-16 Score=121.30 Aligned_cols=77 Identities=23% Similarity=0.414 Sum_probs=70.8
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
..+.++|||+|||. .+++++|+++|++||.|.++++..++ +|||||+|.+.++|..|++.|||..+.|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQ-EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCT-TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45668999999998 69999999999999999999998753 7899999999999999999999999999999999
Q ss_pred Ecc
Q 013749 316 FSK 318 (437)
Q Consensus 316 ~~~ 318 (437)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 975
No 268
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=3.1e-16 Score=121.02 Aligned_cols=75 Identities=13% Similarity=0.253 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCcc-CcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecccc
Q 013749 3 EPSKVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~-~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~ 81 (437)
.++++|||+|||.+ +++++|+++|++||.|.+|.+ .+|||||+|.+.++|.+|++.|++. .++|+.|.|.|+...
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGR--VLAGQTLDINMAGEP 100 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTC--EETTEECCEEESCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECCCC
Confidence 34589999999999 999999999999999999999 6899999999999999999999998 899999999998754
No 269
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=1.6e-16 Score=124.09 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=71.6
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCC---eeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++|||+|||+++|+++|+++|++||. |..++++.++. +|||||+|.+.++|++|++ +|+..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4588999999999999999999999999 89999986533 7899999999999999998 999999999999999
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
|+.+.
T Consensus 95 a~~~~ 99 (118)
T 2db1_A 95 SHRTE 99 (118)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97665
No 270
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=119.70 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=72.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeE-EEEEee---CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~---~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||+++|+++|+++|++||.|.. +.++.+ +.+|||||+|.+.++|++|++. |+..+.||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34689999999999999999999999999987 777654 2378999999999999999987 999999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
..+...
T Consensus 92 ~~~~~~ 97 (104)
T 1wg5_A 92 SRAEVR 97 (104)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 877654
No 271
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=8.1e-17 Score=119.41 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=65.3
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCc--cceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G--~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+|||+|||.++|+++|+++|++|| .|.+|+++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~--~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS--CSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC--eeCCEEEEEEE
Confidence 4799999999999999999999999 9999999976 389999999999999999999998 89999999999
Q ss_pred cccc
Q 013749 78 SSHQ 81 (437)
Q Consensus 78 s~~~ 81 (437)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 8765
No 272
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=122.86 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=73.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
.++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++. |+..|.|+.|+|+++++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 5899999999999999999999999999999998763 378999999999999999988 99999999999999998
Q ss_pred ccccc
Q 013749 430 QSIRE 434 (437)
Q Consensus 430 ~~~~~ 434 (437)
+....
T Consensus 106 ~~~~~ 110 (116)
T 1x4b_A 106 REESG 110 (116)
T ss_dssp CCCCC
T ss_pred CccCC
Confidence 86544
No 273
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=5.6e-17 Score=155.21 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ .+|||||+|.+.++|.+||..|||..|.|+.|.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999998653 3789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+.+..+
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 976553
No 274
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=118.43 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=68.7
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
..++++|||+|||.++|+++|+++|++||.| +++++ +|||||+|.+.++|++|+..+++. .+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR--EIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE--EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCC--EeCCeEEEEE
Confidence 4678999999999999999999999999987 45543 699999999999999999999988 8999999999
Q ss_pred eccccc
Q 013749 77 FSSHQE 82 (437)
Q Consensus 77 ~s~~~~ 82 (437)
|+.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 988764
No 275
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=119.33 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceE-EEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITK-LVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~-v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.+.++|||+|||+++||+||+++|++||.|.+ |.|+.+ +|||||+|.+.++|.+|++. ++. .++|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~--~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKE--RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTC--CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccc--hhCCcEEEEE
Confidence 45789999999999999999999999999987 888754 59999999999999999997 776 8999999999
Q ss_pred ecccccccc
Q 013749 77 FSSHQELTT 85 (437)
Q Consensus 77 ~s~~~~~~~ 85 (437)
++..+++..
T Consensus 90 ~~~~~~~~~ 98 (104)
T 1wg5_A 90 KSSRAEVRT 98 (104)
T ss_dssp EECTTTSCC
T ss_pred ECCHHHHHH
Confidence 988766543
No 276
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.6e-16 Score=126.33 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=71.9
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCC---eeEEEEEeeCC---ceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~---~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++|||+|||+++|+++|+++|++||. |..++++.++. +|||||+|.+.++|++|++ +|+..|.||.|.|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 3588999999999999999999999999 88999986633 7899999999999999999 999999999999999
Q ss_pred ccCccc
Q 013749 427 SQLQSI 432 (437)
Q Consensus 427 s~~~~~ 432 (437)
|+.+..
T Consensus 122 a~~~e~ 127 (136)
T 2hgl_A 122 SHRTEM 127 (136)
T ss_dssp CCHHHH
T ss_pred CChHHH
Confidence 976653
No 277
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.6e-17 Score=124.64 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCe-eEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSI-VNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||+++|+++|+++|++||.| ..++|+.++ .+|||||+|.+.++|++|++. |+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 346899999999999999999999999999 889998654 378999999999999999977 999999999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
.++..
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87764
No 278
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=1.7e-16 Score=117.07 Aligned_cols=73 Identities=18% Similarity=0.383 Sum_probs=69.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCC----c-------cceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccC
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPF----G-------VITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRG 70 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g 70 (437)
+.++++|||+|||+++++++|+++|++| | .|.++.+.+++|||||+|.+.++|.+|+ .+++. .++|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~--~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI--IFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC--EETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC--EECC
Confidence 5688999999999999999999999999 8 9999999999999999999999999999 99988 8999
Q ss_pred eEEEEEe
Q 013749 71 RNVYVQF 77 (437)
Q Consensus 71 ~~l~v~~ 77 (437)
+.|+|..
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999873
No 279
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=121.64 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=72.5
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC------CeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~------~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..+.++|||+|||+++++++|+++|++||+|.+|.+++++ |||||+|.+.++|.+|+.. ++. .++|+.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~--~~~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH--TLDGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE--EETTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC--eECCEEEEE
Confidence 4678999999999999999999999999999999999873 8999999999999999998 776 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99887653
No 280
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=117.05 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
..+.++|||+|||. .+++++|+++|++||.|..|.+..+. +|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDE-KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567999999998 69999999999999999999998854 6899999999999999999999999999999999
Q ss_pred EccCCC
Q 013749 316 FSKHPN 321 (437)
Q Consensus 316 ~~~~~~ 321 (437)
|++...
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998664
No 281
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=126.41 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.+++|++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.|++. .++|+.|.|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~ 117 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF--NILNKRLKVA 117 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE--ECSSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEE
Confidence 45689999999999999999999999999999999976 589999999999999999999988 8999999999
Q ss_pred ecccccc
Q 013749 77 FSSHQEL 83 (437)
Q Consensus 77 ~s~~~~~ 83 (437)
|+..+..
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 282
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=126.74 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..+.++|||+|||..+++++|+++|++||.|..++++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999998652 378999999999999999999999999999999998
Q ss_pred c
Q 013749 427 S 427 (437)
Q Consensus 427 s 427 (437)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 283
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=1.8e-16 Score=126.81 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=71.5
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
+.++|||+|||. .+++++|+++|+.||.|..|.+..+. +|+|||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 46 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 46 GMTSLKVDNLTY-RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GCCCEEEECCCS-SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345899999998 69999999999999999999998753 789999999999999999999999999999999999
Q ss_pred cCCC
Q 013749 318 KHPN 321 (437)
Q Consensus 318 ~~~~ 321 (437)
+...
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 284
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=117.93 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc--CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~--~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
+.+++|||+|||+++++++|+++|++||.|. +.++.+ +|||||+|.+.++|.+|++.|++. .++|+.|.|.++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL--RLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC--CSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCC
Confidence 4579999999999999999999999999995 566644 799999999999999999999998 89999999999876
Q ss_pred c
Q 013749 81 Q 81 (437)
Q Consensus 81 ~ 81 (437)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 285
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=9e-17 Score=128.16 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeE--EEEEeeC----CceEEEEEecCHHHHHHHHHHhCCC----ccCCcE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--TKLFEMN----GKKQALVLFETEEQATEALVCKHAS----SLGGSI 421 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~----~~~g~~ 421 (437)
.++++|||+|||+++|+++|+++|++||.|.. |+|+.++ .+|||||+|.+. +|.+|++.|||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999977 9998765 378999999999 999999999999 999999
Q ss_pred EEEEeccCcc
Q 013749 422 IRISFSQLQS 431 (437)
Q Consensus 422 l~v~~s~~~~ 431 (437)
|+|+|++++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 286
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=121.19 Aligned_cols=76 Identities=17% Similarity=0.352 Sum_probs=67.7
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
..+.++|||+|||.++++++|+++|++|| |.+|.++++ +|||||+|.+.++|.+|+ .+++. .++|+.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~--~~~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE--SLGNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC--CBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC--EECCeEEE
Confidence 35679999999999999999999999999 999999875 489999999999999999 89988 89999999
Q ss_pred EEecccc
Q 013749 75 VQFSSHQ 81 (437)
Q Consensus 75 v~~s~~~ 81 (437)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998764
No 287
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=7.3e-16 Score=121.75 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|.|.|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEE
Confidence 56799999999999999999999999999999999975 599999999999999999999988 89999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87754
No 288
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=115.30 Aligned_cols=75 Identities=12% Similarity=0.279 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+.++|||+|||.+++++||+++|++| .|.+|.++++ +|||||+|.+.++|.+|++ +++. .++|+.|.|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~--~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNRE--YMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSE--EETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCc--eeCCcEEEEEE
Confidence 467899999999999999999999999 9999999986 5899999999999999999 9988 89999999999
Q ss_pred cccc
Q 013749 78 SSHQ 81 (437)
Q Consensus 78 s~~~ 81 (437)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8765
No 289
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=126.29 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHhhhccCCeeE--------EEEEe-eCCceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 351 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFE-MNGKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~-~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
..++++|||+|||+.+|+++|+++|++||.|.. +++.. .+.+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346789999999999999999999999999876 33332 245899999999999999999999999999999
Q ss_pred EEEEeccCccccc
Q 013749 422 IRISFSQLQSIRE 434 (437)
Q Consensus 422 l~v~~s~~~~~~~ 434 (437)
|+|+||++..-+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998765443
No 290
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=3.5e-16 Score=122.10 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCcc---ceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV---ITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~---i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
.+.++|||+|||+++||+||+++|++||. |.+|+++++ +|||||+|.+.++|.+|++ +++. .++|+.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~--~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRE--SMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTE--EETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC--eECCeEEE
Confidence 45689999999999999999999999999 899999976 4899999999999999999 8877 89999999
Q ss_pred EEecccccccc
Q 013749 75 VQFSSHQELTT 85 (437)
Q Consensus 75 v~~s~~~~~~~ 85 (437)
|.++..++...
T Consensus 92 V~~a~~~~~~~ 102 (118)
T 2db1_A 92 VFKSHRTEMDW 102 (118)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHH
Confidence 99998776544
No 291
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=113.62 Aligned_cols=70 Identities=10% Similarity=0.251 Sum_probs=65.6
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
++|||+|||+++++++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.++ . .++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~--~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H--ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C--CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C--ccCCEEEEEEec
Confidence 47999999999999999999999999999999876 4899999999999999999988 5 899999999985
No 292
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=121.42 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=69.9
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee----CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
+.++|||+|||.++|+++|+++|++||.|.. .++.+ ..+|||||+|.+.++|++|++ |||..+.|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999877 33322 458899999999999999998 99999999999999998
Q ss_pred Ccccc
Q 013749 429 LQSIR 433 (437)
Q Consensus 429 ~~~~~ 433 (437)
++...
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87543
No 293
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=114.29 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=68.7
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
..++++|||+|||.++||++|+++|++||+|.+|.++++ +|||||+|.+.++|++|. +..+.++|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~----~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC----GEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT----TCEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh----cCCceeCCEEEEEEecCC
Confidence 468899999999999999999999999999999999877 899999999999998653 344467999999999887
Q ss_pred ccc
Q 013749 81 QEL 83 (437)
Q Consensus 81 ~~~ 83 (437)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 294
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.2e-16 Score=117.66 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=69.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||.++++++|+++|+.|+ .+.++.++ .++||||+|.+.++|++|++.|||..|.|+.|+|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999885 45555432 2789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987654
No 295
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-16 Score=121.05 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccc-eEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVI-TKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i-~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++|+++|+++|++||.| .+|.|+++ +|||||+|.+.++|.+|++. ++. .++|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~--~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRK--KLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSE--EETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCC--ccCCeEEEE
Confidence 3567999999999999999999999999999 88999865 59999999999999999987 776 899999999
Q ss_pred Eeccccccc
Q 013749 76 QFSSHQELT 84 (437)
Q Consensus 76 ~~s~~~~~~ 84 (437)
.++.+++..
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2cpy_A 89 HVVTLEDMR 97 (114)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999876543
No 296
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=120.61 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=70.5
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
+.++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++. ++. .++|+.|.|.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~--~~~g~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH--SIDGRVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE--EETTEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc--EECCEEEEEEE
Confidence 4589999999999999999999999999999999986 48999999999999999997 766 89999999999
Q ss_pred cccccc
Q 013749 78 SSHQEL 83 (437)
Q Consensus 78 s~~~~~ 83 (437)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 887643
No 297
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-16 Score=125.65 Aligned_cols=80 Identities=14% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
.+.++|||+|||+++|+++|+++|++||.|..+.++.++ .+|||||+|.+.++|.+|++ |||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 346899999999999999999999999999875444332 27899999999999999999 9999999999999999
Q ss_pred cCccc
Q 013749 428 QLQSI 432 (437)
Q Consensus 428 ~~~~~ 432 (437)
+.+..
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87653
No 298
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=121.19 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=69.8
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
+++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+ .+++. .++|+.|.|.|+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ--RLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE--EETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC--EeCCeEEEEEec
Confidence 579999999999999999999999999999999865 489999999999999999 89988 899999999998
Q ss_pred cccc
Q 013749 79 SHQE 82 (437)
Q Consensus 79 ~~~~ 82 (437)
..+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 299
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=119.08 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=69.9
Q ss_pred CceEEEEcCCCccC------cHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCe-E
Q 013749 4 PSKVIHVRNVGHEI------SENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGR-N 72 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~------te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~-~ 72 (437)
.+++|||+|||..+ |+++|+++|++||.|.+|.+++. +|||||+|.+.++|.+|+..|++. .+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~--~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSE--ECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCc--ccCCCce
Confidence 46899999999999 88999999999999999999843 699999999999999999999998 89998 9
Q ss_pred EEEEecccc
Q 013749 73 VYVQFSSHQ 81 (437)
Q Consensus 73 l~v~~s~~~ 81 (437)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998654
No 300
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.6e-16 Score=119.45 Aligned_cols=77 Identities=16% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcc--------c
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTI--------R 69 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~--------~ 69 (437)
.++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK--FIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC--CCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC--EEcCCccccCC
Confidence 46789999999999999999999999999999999987 589999999999999999999998 56 5
Q ss_pred CeEEEEEecccc
Q 013749 70 GRNVYVQFSSHQ 81 (437)
Q Consensus 70 g~~l~v~~s~~~ 81 (437)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 301
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=118.56 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=69.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
..+|||+|||+++|++||+++|++| .|..+.|+.++ .+|||||+|.+.++|++|+ .+|+..|+||.|.|..++.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4789999999999999999999999 89999998653 3789999999999999999 79999999999999988754
Q ss_pred c
Q 013749 431 S 431 (437)
Q Consensus 431 ~ 431 (437)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 302
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.8e-16 Score=116.59 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=68.0
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+.++|||+|||+++||+||+++|++||. ++|+|+++ +|||||+|.+.++|++|++ +++. .++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~--~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKA--NMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSC--CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCC--eECCcEEEEEE
Confidence 56789999999999999999999999995 49999876 4899999999999999995 6776 89999999998
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+...+
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 77654
No 303
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=4e-16 Score=121.20 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=66.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcE-----EEEEecc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-----IRISFSQ 428 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~-----l~v~~s~ 428 (437)
.++|||+|||+++++++|+++|++||.|..+.++.+ +||||+|.+.++|++|++.|||..|.|+. |+|..++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 478999999999999999999999999999999753 99999999999999999999999999998 7777766
Q ss_pred Ccc
Q 013749 429 LQS 431 (437)
Q Consensus 429 ~~~ 431 (437)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 304
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=114.68 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=63.4
Q ss_pred ceEEEEcCCCccC------cHHHHHHhccCCccceEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCCcccCe-EE
Q 013749 5 SKVIHVRNVGHEI------SENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGR-NV 73 (437)
Q Consensus 5 s~~l~V~~Lp~~~------te~~l~~~f~~~G~i~~v~i~~~----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~-~l 73 (437)
+++|||+|||..+ ++++|+++|++||+|.+|.+.++ +|||||+|.+.++|.+|++.|++. .++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC--CCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc--ccCCceeE
Confidence 5799999999999 78999999999999999999843 699999999999999999999998 88998 77
Q ss_pred EE
Q 013749 74 YV 75 (437)
Q Consensus 74 ~v 75 (437)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 305
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=127.15 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=70.7
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCc--cceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G--~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++|||+|||+++||++|+++|++|| .|.+|+|++| +|||||+|.+.++|.+|+..|++. .++|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~--~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK--VLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC--EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCeEeEE
Confidence 457999999999999999999999999 9999999977 489999999999999999999998 999999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.++.++.
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9987653
No 306
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.4e-16 Score=120.07 Aligned_cols=80 Identities=24% Similarity=0.470 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccc----eEEEEEcc--CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVI----TKLVMLRA--KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i----~~v~i~~~--~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..|+++|||+|||.++|+++|+++|++||.| ..+.+... +|||||+|.+.++|.+|++.|++. .++|+.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY--KLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC--BCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEE
Confidence 3578999999999999999999999999999 56666644 599999999999999999999998 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987643
No 307
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=116.10 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=70.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++. +. .++|+.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~--~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH--MIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE--EETTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC--eeCCeEEEE
Confidence 357789999999999999999999999999999999987 37999999999999999994 33 799999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99887643
No 308
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=5.1e-16 Score=123.42 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCcc---ceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV---ITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~---i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
...++|||+|||+++||+||+++|++||. |.+|+|+++ +|||||+|.+.++|.+|++ +++. .++|+.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~--~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRE--SMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEE--ESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC--EECCEEEE
Confidence 45689999999999999999999999999 889999976 4899999999999999999 8887 89999999
Q ss_pred EEeccccccc
Q 013749 75 VQFSSHQELT 84 (437)
Q Consensus 75 v~~s~~~~~~ 84 (437)
|.++..++..
T Consensus 119 V~~a~~~e~~ 128 (136)
T 2hgl_A 119 VFKSHRTEMD 128 (136)
T ss_dssp EEECCHHHHH
T ss_pred EEECChHHHH
Confidence 9998776543
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=6.1e-16 Score=125.19 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=69.8
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.+++++|||+|||.++++++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++.+++. .++|+.|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE--EETTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC--EECCEEEEE
Confidence 357899999999999999999999999999999999876 599999999999999999999988 899999999
Q ss_pred Eec
Q 013749 76 QFS 78 (437)
Q Consensus 76 ~~s 78 (437)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 975
No 310
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.3e-15 Score=114.16 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=71.2
Q ss_pred CCcceEEecCCCC--CC---CHHHHHHhhhccCCeeEEEEEeeC-----CceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 352 SPTKMIHLSTLPQ--DV---TEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 352 ~~~~~l~v~nlp~--~~---t~~~l~~~f~~~G~v~~~~i~~~~-----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
.|+++|+|+|+.. ++ ++++|++.|++||.|.++.|+.++ .+|+|||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5689999999952 23 689999999999999999998752 3899999999999999999999999999999
Q ss_pred EEEEeccCcc
Q 013749 422 IRISFSQLQS 431 (437)
Q Consensus 422 l~v~~s~~~~ 431 (437)
|+|+|+....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999997644
No 311
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=3.3e-16 Score=111.84 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=64.2
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
+|||+|||+++++++|+++|++||+|.+|.++++ +|||||+|.+.++|++|++ +++. .++|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~--~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH--EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC--CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC--EECCEEEEEEeC
Confidence 4899999999999999999999999999999876 3899999999999999998 8877 899999999875
No 312
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=127.84 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=76.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
.++++|||+|||..+++++|+++|++||.|..|.+..+. .+|||||+|.+.++|.+|++.|||..|.|+.|+|+||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 456899999999999999999999999999999998653 37899999999999999999999999999999999998
Q ss_pred Cccccc
Q 013749 429 LQSIRE 434 (437)
Q Consensus 429 ~~~~~~ 434 (437)
......
T Consensus 166 ~~~~~~ 171 (177)
T 2f3j_A 166 SQIDLE 171 (177)
T ss_dssp SGGGGC
T ss_pred CCCCCC
Confidence 876543
No 313
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=1.3e-15 Score=125.57 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.++|+++|+++|++||+|.+|.|+++ +|||||+|.+.++|.+|++.|++. .+.|+.|.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT--RLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEE
Confidence 57899999999999999999999999999999999876 389999999999999999999988 8999999999
Q ss_pred eccccc
Q 013749 77 FSSHQE 82 (437)
Q Consensus 77 ~s~~~~ 82 (437)
|+.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997643
No 314
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.7e-16 Score=117.83 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=66.8
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
++|||+|||.++++++|+++|++||+|.+|.++++ +|||||+|.+.+ |.+|+..+++. .++|++|.|.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEEEEEEcC
Confidence 68999999999999999999999999999999876 589999999999 99999999998 8999999999987
Q ss_pred ccc
Q 013749 80 HQE 82 (437)
Q Consensus 80 ~~~ 82 (437)
+..
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 315
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=4.8e-16 Score=122.85 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=69.8
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+ .+++. .++|+.|.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET--VFRGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC--EETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC--eECCeEEEEEE
Confidence 3689999999999999999999999999999999976 589999999999999999 79988 89999999999
Q ss_pred cccc
Q 013749 78 SSHQ 81 (437)
Q Consensus 78 s~~~ 81 (437)
+...
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=114.38 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=68.1
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCC-eEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN-QALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~-~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~ 80 (437)
+..+++|||+|||.++|+++|+++|++||.|.+|.+.+..+ ||||+|.+.++|.+|+. +++. .++|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~--~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQH--SLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCC--EETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCe--EECCEEEEEEECCc
Confidence 45678999999999999999999999999999983333222 99999999999999999 9988 89999999998766
Q ss_pred cc
Q 013749 81 QE 82 (437)
Q Consensus 81 ~~ 82 (437)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 317
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=1.1e-15 Score=127.00 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||+++++++|+.+|++||.|..|.|+++ +|||||+|.+.++|.+|+..|++. .+.|++|.|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 147 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA--EIMGQTIQVD 147 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEE
Confidence 46688999999999999999999999999999999987 499999999999999999999998 8999999999
Q ss_pred eccccc
Q 013749 77 FSSHQE 82 (437)
Q Consensus 77 ~s~~~~ 82 (437)
|+.++.
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 987654
No 318
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-16 Score=121.64 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=71.5
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCC---eeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++|||+|||+++|+++|+++|++||. |..+.++.++ .+|+|||+|.+.++|.+|++ +|+..++|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 4588999999999999999999999998 8999998654 37899999999999999998 999999999999999
Q ss_pred ccCcc
Q 013749 427 SQLQS 431 (437)
Q Consensus 427 s~~~~ 431 (437)
++++.
T Consensus 89 a~~~~ 93 (107)
T 2lmi_A 89 INNED 93 (107)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98765
No 319
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=1.7e-15 Score=118.43 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCcc
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 431 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~~ 431 (437)
.++++|||+|+ ++++++|+++|++||.|.++.+. +.+|||||+|.+.++|.+|++.|||..+.|+.|+|+|++++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 45789999996 69999999999999999999996 578999999999999999999999999999999999999875
Q ss_pred cc
Q 013749 432 IR 433 (437)
Q Consensus 432 ~~ 433 (437)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 320
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=5.1e-16 Score=135.72 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=72.8
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccC--CeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEe
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 426 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 426 (437)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++ .+|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 357899999999999999999999999 99999999774 378999999999999999999999999999999999
Q ss_pred ccCccc
Q 013749 427 SQLQSI 432 (437)
Q Consensus 427 s~~~~~ 432 (437)
++++..
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 987643
No 321
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=1.6e-15 Score=118.56 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEeccccc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~~~~ 82 (437)
.++++|||+|| ++|+++|+++|++||.|.+|.+.+.+|||||+|.+.++|.+|++.|++. .+.|+.|.|.|+.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC--BCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEeCCCC
Confidence 57799999996 6999999999999999999999999999999999999999999999998 8999999999988764
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.6e-17 Score=127.02 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCeeE--------EEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCC
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGG 419 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g 419 (437)
++.++|||+|||..+++++|+++|++||.|.. +.++.++ .+|||||+|.+.++|++|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 8887653 37899999999999999999999999999
Q ss_pred cEEEEEeccCcccc
Q 013749 420 SIIRISFSQLQSIR 433 (437)
Q Consensus 420 ~~l~v~~s~~~~~~ 433 (437)
+.|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887643
No 323
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=2.9e-16 Score=112.19 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=65.3
Q ss_pred eEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC----CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 356 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~----~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|.+|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998653 37899999999999999997 4999999999999886
No 324
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=119.61 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCcc---ceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV---ITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~---i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~ 74 (437)
...++|||+|||+++|++||+++|++||. |.+|.++++ +|||||+|.+.++|.+|+. +++. .++|+.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~--~~~gr~i~ 85 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRM--YMGQRYVE 85 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTC--CSSSSCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcc--eeCCeEEE
Confidence 46789999999999999999999999998 899999876 4899999999999999999 8887 89999999
Q ss_pred EEecccccccc
Q 013749 75 VQFSSHQELTT 85 (437)
Q Consensus 75 v~~s~~~~~~~ 85 (437)
|.++.+++...
T Consensus 86 V~~a~~~~~~~ 96 (107)
T 2lmi_A 86 VYEINNEDVDA 96 (107)
T ss_dssp CEECCHHHHHH
T ss_pred EEECCHHHHHH
Confidence 99988766443
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.1e-16 Score=115.62 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEE-EEEccC--CeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAK--NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v-~i~~~~--~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
.++++|||+|||+++++++|+++|++||.|.+| .+++++ +.|||+|.+.++|.+|++.|++. .++|++|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF--QLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcC
Confidence 347899999999999999999999999999999 488775 55999999999999999999998 8999999999988
Q ss_pred ccc
Q 013749 80 HQE 82 (437)
Q Consensus 80 ~~~ 82 (437)
+++
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.5e-15 Score=111.95 Aligned_cols=71 Identities=17% Similarity=0.386 Sum_probs=66.4
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhcc----C-------CeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEH----G-------SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
+.++|||+|||.++++++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 35899999999999999999999999 8 899999874 5899999999999999999 99999999999
Q ss_pred EEEEe
Q 013749 422 IRISF 426 (437)
Q Consensus 422 l~v~~ 426 (437)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 327
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=116.87 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=68.7
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
+++|||+|||+++||+||+++|++| .|.+|.|+++ +|||||+|.+.++|.+|+ .+++. .++|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~--~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRM--LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTE--EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCC--eECCeEEEEEECC
Confidence 5799999999999999999999999 8999999865 599999999999999999 57877 8999999999887
Q ss_pred ccccc
Q 013749 80 HQELT 84 (437)
Q Consensus 80 ~~~~~ 84 (437)
.+++.
T Consensus 92 ~~~~~ 96 (109)
T 2dnn_A 92 ERQWV 96 (109)
T ss_dssp HHHHH
T ss_pred ccchh
Confidence 76543
No 328
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3.6e-16 Score=118.73 Aligned_cols=76 Identities=9% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEc------cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR------AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~------~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.++++|||+|||.++|+++|+++|++||.|.+ .++. .+|||||+|.+.++|.+|++ +++. .+.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL--KVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC--CBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc--EECCcEEEEE
Confidence 46889999999999999999999999998877 4443 36999999999999999999 9988 8999999999
Q ss_pred eccccc
Q 013749 77 FSSHQE 82 (437)
Q Consensus 77 ~s~~~~ 82 (437)
++.++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 987653
No 329
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.4e-15 Score=113.87 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=72.1
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
..+.++|||+|||. .+++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..+++ .+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPY-HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCS-SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 45567999999998 69999999999999999999998863 68999999999999999999998 8999999999
Q ss_pred EccCCC
Q 013749 316 FSKHPN 321 (437)
Q Consensus 316 ~~~~~~ 321 (437)
|+....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997654
No 330
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.3e-16 Score=120.57 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=70.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHhhhccCCe----eEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEE
Q 013749 352 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSI----VNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRI 424 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 424 (437)
.+..+|||+|||+++|+++|+++|++||.| ..|.|+.+. .+|||||+|.+.++|++|++. |+..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346899999999999999999999999976 688888653 278999999999999999986 999999999999
Q ss_pred EeccCccc
Q 013749 425 SFSQLQSI 432 (437)
Q Consensus 425 ~~s~~~~~ 432 (437)
..+..++.
T Consensus 100 ~~a~~~e~ 107 (123)
T 2dha_A 100 FRSTAAEV 107 (123)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99876554
No 331
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.3e-15 Score=118.33 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=66.9
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeE-----EEEEec
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRN-----VYVQFS 78 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~-----l~v~~s 78 (437)
...+|||+|||.++|++||+++|++||+|.+|.|+++ |||||+|.+.++|++|++.|++. .++|+. |.|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC--BCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC--EECCcEeeeEEEEeccC
Confidence 3578999999999999999999999999999999998 99999999999999999999998 899998 667665
Q ss_pred ccc
Q 013749 79 SHQ 81 (437)
Q Consensus 79 ~~~ 81 (437)
.+.
T Consensus 92 ~~~ 94 (115)
T 3beg_B 92 GPR 94 (115)
T ss_dssp C--
T ss_pred CCC
Confidence 553
No 332
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=1.2e-15 Score=116.01 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=70.7
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
++++|||+|||.++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|++|++ ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 35899999999999999999999999999999998764 37899999999999999998 99999999999999876
Q ss_pred ccc
Q 013749 430 QSI 432 (437)
Q Consensus 430 ~~~ 432 (437)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 333
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=2e-15 Score=130.86 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCccC---------cHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcc-----
Q 013749 3 EPSKVIHVRNVGHEI---------SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTI----- 68 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~---------te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~----- 68 (437)
.++++|||+|||..+ +|++|+++|++||+|.+|+|++++|||||+|.+.++|+.|++.|++. .+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~--~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ--TLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC--CCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC--EEecccc
Confidence 467999999999998 79999999999999999999999999999999999999999999998 55
Q ss_pred -------cCeEEEEEecccc
Q 013749 69 -------RGRNVYVQFSSHQ 81 (437)
Q Consensus 69 -------~g~~l~v~~s~~~ 81 (437)
.|+.|.|.|+...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 8999999998764
No 334
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.6e-16 Score=121.88 Aligned_cols=78 Identities=9% Similarity=0.230 Sum_probs=68.8
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.+.++|||+|||+++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+. +++. .++|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~--~~~gr~i~V~ 99 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ--YMGNRFIQVH 99 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB--CSTTSCBEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC--eECCcEEEEE
Confidence 34589999999999999999999999999988544432 5999999999999999999 8887 8999999999
Q ss_pred ecccccc
Q 013749 77 FSSHQEL 83 (437)
Q Consensus 77 ~s~~~~~ 83 (437)
++..+++
T Consensus 100 ~a~~~~~ 106 (124)
T 1wel_A 100 PITKKGM 106 (124)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9887653
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=112.90 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=68.8
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~--~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
.+++++|||+|||.++++++|+++|++||.|..+ ... .+|||||+|.+.++|.+|++.+++. .++|+.|.|.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEE--EETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEcC
Confidence 3568999999999999999999999999998777 222 2599999999999999999999988 8999999999987
Q ss_pred cc
Q 013749 80 HQ 81 (437)
Q Consensus 80 ~~ 81 (437)
++
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 336
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=3.3e-15 Score=113.28 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCceEEEEcCCCc-----cCcHHHHHHhccCCccceEEEEEcc-------CCeEEEEecChhHHHHHHHhhccCCCccc
Q 013749 2 TEPSKVIHVRNVGH-----EISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFYTNVQPTIR 69 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~-----~~te~~l~~~f~~~G~i~~v~i~~~-------~~~afV~F~~~~~A~~a~~~~~~~~~~~~ 69 (437)
..||++|+|+||.. +-+++||++.|++||.|.+|.|+++ +|+|||+|.+.++|.+|++.||+. .+.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~--~~~ 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR--YFG 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC--EET
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC--EEC
Confidence 57999999999962 2478999999999999999999864 599999999999999999999999 999
Q ss_pred CeEEEEEecccccc
Q 013749 70 GRNVYVQFSSHQEL 83 (437)
Q Consensus 70 g~~l~v~~s~~~~~ 83 (437)
|+.|.|.|+.....
T Consensus 83 Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 83 GRVVKACFYNLDKF 96 (105)
T ss_dssp TEECEEEECCHHHH
T ss_pred CcEEEEEEcCHHHh
Confidence 99999999876543
No 337
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.2e-16 Score=113.22 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=67.1
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCc--cCCcEEEEEeccCc
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS--LGGSIIRISFSQLQ 430 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~--~~g~~l~v~~s~~~ 430 (437)
++++|||+|||.++++++|+++|++||.|.+++++.+ .+|||||+|.+.++|++| ++.. +.|+.|.|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCC
Confidence 4689999999999999999999999999999999864 689999999999999754 4444 47999999999987
Q ss_pred cccc
Q 013749 431 SIRE 434 (437)
Q Consensus 431 ~~~~ 434 (437)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 338
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.1e-15 Score=119.31 Aligned_cols=79 Identities=30% Similarity=0.355 Sum_probs=69.4
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCee--EEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+.++|||+|||+++|+++|+++|++| .|. .|+|+.++ .+|||||+|.+.++|++|++ +++..|.||.|.|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 45889999999999999999999999 676 88888653 37899999999999999997 5789999999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
..++..
T Consensus 119 ~~~e~~ 124 (126)
T 2hgm_A 119 SQEEVR 124 (126)
T ss_dssp CHHHHC
T ss_pred CHHHhh
Confidence 776543
No 339
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-16 Score=124.98 Aligned_cols=81 Identities=20% Similarity=0.432 Sum_probs=74.0
Q ss_pred CCCCceEEEEcCCCccCcHHHHHHhccCCccceE--------EEEEcc------CCeEEEEecChhHHHHHHHhhccCCC
Q 013749 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITK--------LVMLRA------KNQALLQMQDVPSAINALQFYTNVQP 66 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~--------v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~ 66 (437)
+..++++|||+|||.++++++|+++|++||.|.+ |.++++ +|||||+|.+.++|.+|++.|++.
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-- 80 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-- 80 (116)
Confidence 3578899999999999999999999999999998 888876 489999999999999999999998
Q ss_pred cccCeEEEEEecccccc
Q 013749 67 TIRGRNVYVQFSSHQEL 83 (437)
Q Consensus 67 ~~~g~~l~v~~s~~~~~ 83 (437)
.+.|++|.|.++.++..
T Consensus 81 ~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRAD 97 (116)
Confidence 89999999999887643
No 340
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=114.44 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCCcceEEecCCCCCC-----------CHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCC
Q 013749 351 CSPTKMIHLSTLPQDV-----------TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 419 (437)
Q Consensus 351 ~~~~~~l~v~nlp~~~-----------t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g 419 (437)
..++++|+|+||.... ++++|+++|++||.|..+.|.....+|+|||+|.+.++|++|++.|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3567999999994322 25899999999999999977544458999999999999999999999999999
Q ss_pred cEEEEEeccCcc
Q 013749 420 SIIRISFSQLQS 431 (437)
Q Consensus 420 ~~l~v~~s~~~~ 431 (437)
+.|+|+|+.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998754
No 341
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=5e-16 Score=123.85 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=70.6
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
..++|||+|||+++|+++|+++|++|| |+.|.|+.++ .+|||||+|.+.++|++|+ .+|+..|.||.|.|..+..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 357899999999999999999999999 7799988653 3789999999999999999 8999999999999999887
Q ss_pred ccc
Q 013749 430 QSI 432 (437)
Q Consensus 430 ~~~ 432 (437)
+..
T Consensus 123 ~~~ 125 (139)
T 2hgn_A 123 TGA 125 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 342
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7.1e-16 Score=110.13 Aligned_cols=69 Identities=9% Similarity=0.204 Sum_probs=63.1
Q ss_pred EEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEec
Q 013749 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (437)
Q Consensus 7 ~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s 78 (437)
+|||+|||+++++++|+++|++||+|.+|.++++ +|||||+|.+.++|.+|++. ++. .++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~--~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH--NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC--CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC--eECCEEEEEEEC
Confidence 5899999999999999999999999999999865 58999999999999999995 555 799999999874
No 343
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=112.63 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=67.9
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++++|||+|||.++|+++|+++|+.|+ +|.++.+ +|||||+|.+.++|.+|++.|++. .+.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEE
Confidence 36789999999999999999999999884 5666655 389999999999999999999998 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.|+.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998754
No 344
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-16 Score=119.55 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccc----eEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVI----TKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i----~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l 73 (437)
.+.++|||+|||+++||+||+++|++||.| .+|.|+.+ +|||||+|.+.++|++|++. ++. .++|+.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~--~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKD--LLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTE--ESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCC--eeCCeEE
Confidence 456899999999999999999999999975 68999865 49999999999999999996 665 8999999
Q ss_pred EEEecccccccc
Q 013749 74 YVQFSSHQELTT 85 (437)
Q Consensus 74 ~v~~s~~~~~~~ 85 (437)
.|..+..+++..
T Consensus 98 ~V~~a~~~e~~~ 109 (123)
T 2dha_A 98 ELFRSTAAEVQQ 109 (123)
T ss_dssp CCEEECHHHHHH
T ss_pred EEEECCHHHHHH
Confidence 999987766544
No 345
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.6e-15 Score=114.14 Aligned_cols=76 Identities=8% Similarity=0.288 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+. ++. .++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~--~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQI--NFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCC--EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCC--eECCEEEEEEE
Confidence 35799999999999999999999999999999999985 4999999999999999998 665 89999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+.++.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87653
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=3e-15 Score=116.93 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=67.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccce--EEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVIT--KLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~--~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
.+.++|||+|||+++||+||+++|++| .|+ +|+|++| +|||||+|.+.++|.+|++. ++. .++|+.|.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~--~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKE--RIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTC--CBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCC--EECCEEEEE
Confidence 456899999999999999999999999 566 8999865 59999999999999999985 445 899999999
Q ss_pred Eecccccc
Q 013749 76 QFSSHQEL 83 (437)
Q Consensus 76 ~~s~~~~~ 83 (437)
.++..+++
T Consensus 116 ~~a~~~e~ 123 (126)
T 2hgm_A 116 FKSSQEEV 123 (126)
T ss_dssp EEECHHHH
T ss_pred EECCHHHh
Confidence 98876654
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=4.9e-15 Score=128.45 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=70.7
Q ss_pred CCcceEEecCCCCCC---------CHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCcc-----
Q 013749 352 SPTKMIHLSTLPQDV---------TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL----- 417 (437)
Q Consensus 352 ~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~----- 417 (437)
.+.++|||+|||..+ ++++|+++|++||.|.+|+++. ++|||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 346899999999998 7999999999999999999985 589999999999999999999999999
Q ss_pred -------CCcEEEEEeccCccc
Q 013749 418 -------GGSIIRISFSQLQSI 432 (437)
Q Consensus 418 -------~g~~l~v~~s~~~~~ 432 (437)
.|+.|.|.||+.+..
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=6.7e-15 Score=123.22 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.++++|||+|||+++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|++.+++. .++|+.|.|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~--~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC--BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 56789999999999999999999999999999999875 599999999999999999999998 89999999999
Q ss_pred ccccc
Q 013749 78 SSHQE 82 (437)
Q Consensus 78 s~~~~ 82 (437)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87653
No 349
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=8.2e-15 Score=111.18 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCcceEEecCC--CCCCC--------HHHHHHhhhccCCeeEEEEEeeC------CceEEEEEecCHHHHHHHHHHhCCC
Q 013749 352 SPTKMIHLSTL--PQDVT--------EEEIVSHLEEHGSIVNTKLFEMN------GKKQALVLFETEEQATEALVCKHAS 415 (437)
Q Consensus 352 ~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~i~~~~------~~~~afV~f~~~~~A~~A~~~l~~~ 415 (437)
.|+++|.|.|+ |.++. ++||++.|++||.|.+++|+.+. ++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999999 44443 37999999999999999998653 4789999999999999999999999
Q ss_pred ccCCcEEEEEeccCcc
Q 013749 416 SLGGSIIRISFSQLQS 431 (437)
Q Consensus 416 ~~~g~~l~v~~s~~~~ 431 (437)
.+.||.|+|+|+....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999987554
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=119.75 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=69.5
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceE--------EEEEc---cCCeEEEEecChhHHHHHHHhhccCCCcccC
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITK--------LVMLR---AKNQALLQMQDVPSAINALQFYTNVQPTIRG 70 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~--------v~i~~---~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g 70 (437)
..|+++|||+|||+++|+++|+++|++||.|.. +.+.. .+|||||+|.+.++|.+|+..||+. .+.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY--VLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB--EETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC--EeCC
Confidence 357899999999999999999999999999876 44443 3699999999999999999999998 8999
Q ss_pred eEEEEEecccc
Q 013749 71 RNVYVQFSSHQ 81 (437)
Q Consensus 71 ~~l~v~~s~~~ 81 (437)
+.|.|.|+...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 99999998764
No 351
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=117.66 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=71.6
Q ss_pred CCCccEEEEecCCCCCCCHHHHHHHHhccCCeEE--EEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCc----eeCC
Q 013749 241 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR--IKLLRNK-----PDHALVQMGDGFQAELAVHFLKGA----LLFG 309 (437)
Q Consensus 241 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--v~i~~~~-----~g~~fV~f~~~~~A~~A~~~l~g~----~~~g 309 (437)
..++++|||+|||+ .+++++|+++|++||.|.. |+++.++ +|||||+|.+. +|..|+..|||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~-~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNP-HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCT-TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 35567999999999 6999999999999999966 8888865 79999999999 999999999999 9999
Q ss_pred cEEEEEEccCCC
Q 013749 310 KRLEVNFSKHPN 321 (437)
Q Consensus 310 ~~l~v~~~~~~~ 321 (437)
+.|+|.|+++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998653
No 352
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=1.3e-14 Score=112.10 Aligned_cols=79 Identities=13% Similarity=0.269 Sum_probs=69.3
Q ss_pred CCcceEEecCC--CCCCC---HHHHHHhhhccCCeeEEEEEeeC--------CceEEEEEecCHHHHHHHHHHhCCCccC
Q 013749 352 SPTKMIHLSTL--PQDVT---EEEIVSHLEEHGSIVNTKLFEMN--------GKKQALVLFETEEQATEALVCKHASSLG 418 (437)
Q Consensus 352 ~~~~~l~v~nl--p~~~t---~~~l~~~f~~~G~v~~~~i~~~~--------~~~~afV~f~~~~~A~~A~~~l~~~~~~ 418 (437)
+|+++|+|+|+ |.++. ++||++.|++||.|.++.|+.+. ++|+|||+|.+.++|.+|++.|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 47899999999 33343 69999999999999999998653 2589999999999999999999999999
Q ss_pred CcEEEEEeccCc
Q 013749 419 GSIIRISFSQLQ 430 (437)
Q Consensus 419 g~~l~v~~s~~~ 430 (437)
||.|+|+|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998653
No 353
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.9e-15 Score=120.48 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=68.5
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.+.++|||+|||+++||+||+++|++|| |++|.|+++ +|||||+|.+.++|++|+ .+++. .++|+.|.|.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~--~l~gR~i~V~~ 119 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRA--NMQHRYIELFL 119 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSC--SSSSCCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCC--EECCEEEEEEE
Confidence 4568999999999999999999999999 679999876 589999999999999999 67777 89999999998
Q ss_pred cccccc
Q 013749 78 SSHQEL 83 (437)
Q Consensus 78 s~~~~~ 83 (437)
+...+.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 877543
No 354
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=7e-15 Score=128.52 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=70.4
Q ss_pred CceEEEEcCCCccCcHHHHHHhccCCc--cceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 4 PSKVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 4 ~s~~l~V~~Lp~~~te~~l~~~f~~~G--~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..++|||+|||.++||++|+++|++|| .|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|+.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~--~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS--CBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--eECCEEeEE
Confidence 356899999999999999999999999 9999999987 389999999999999999999988 899999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.++.+..
T Consensus 145 ~~a~~~~ 151 (229)
T 3q2s_C 145 TPVNKQF 151 (229)
T ss_dssp EECCHHH
T ss_pred EECCCCc
Confidence 9987653
No 355
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=1.9e-14 Score=110.37 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCcceEEecCC--CCCCC--------HHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 352 SPTKMIHLSTL--PQDVT--------EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 352 ~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
.|+++|.|+|+ |.+.. ++||++.|++||.|.++.+.++..+|+|||+|.+.++|.+|++.|||..+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 46789999999 33321 479999999999999999987667999999999999999999999999999999
Q ss_pred EEEEeccCcc
Q 013749 422 IRISFSQLQS 431 (437)
Q Consensus 422 l~v~~s~~~~ 431 (437)
|+|+|+....
T Consensus 85 i~v~~~~~~~ 94 (114)
T 3s6e_A 85 ITAAYVPLPT 94 (114)
T ss_dssp CEEEEECHHH
T ss_pred EEEEEEcHHH
Confidence 9999986543
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=4.8e-14 Score=119.83 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=68.7
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccCc
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 430 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~~ 430 (437)
.++|||+|||+++|+++|+++|++||.|.+++++.+. .+|+|||+|.+.++|.+|+..++ ..+.|+.|.|.+++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 4899999999999999999999999999999998653 37899999999999999997665 4899999999998764
Q ss_pred cc
Q 013749 431 SI 432 (437)
Q Consensus 431 ~~ 432 (437)
..
T Consensus 188 ~~ 189 (193)
T 2voo_A 188 FA 189 (193)
T ss_dssp --
T ss_pred HH
Confidence 43
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=112.46 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=61.6
Q ss_pred CcceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEee-------CCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 353 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 353 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
++++|||+|||+++++++|+++|++||.|. +.++.+ +.+|||||+|.+.++|++|++.|++ ++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 458899999999999999999999999999 777643 3378999999999999999999943 666666666
Q ss_pred ecc
Q 013749 426 FSQ 428 (437)
Q Consensus 426 ~s~ 428 (437)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=111.10 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc---------CCeEEEEecChhHHHHHHHhhccCCCcccCeE
Q 013749 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---------KNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~---------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~ 72 (437)
..++++|||+|||+++|+++|+++|++||+|. +.++.+ +|||||+|.+.++|++|++.++ .++|+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~----~~~G~~ 79 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL----EEDGKL 79 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE----EETTEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh----hcCCcE
Confidence 35689999999999999999999999999998 777643 6999999999999999999874 478888
Q ss_pred EEEEecc
Q 013749 73 VYVQFSS 79 (437)
Q Consensus 73 l~v~~s~ 79 (437)
+.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 7777543
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.7e-14 Score=107.42 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=68.5
Q ss_pred CCCceEEEEcCCCccC-----------cHHHHHHhccCCccceEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCCcc
Q 013749 2 TEPSKVIHVRNVGHEI-----------SENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTI 68 (437)
Q Consensus 2 ~~~s~~l~V~~Lp~~~-----------te~~l~~~f~~~G~i~~v~i~~--~~~~afV~F~~~~~A~~a~~~~~~~~~~~ 68 (437)
++|+++|+|+||.... ++++|+++|++||.|.+|.|.. .+|||||+|.+.++|.+|++.||+. .+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~--~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR--WF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC--EE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC--EE
Confidence 4689999999994332 2689999999999999997742 2699999999999999999999998 89
Q ss_pred cCeEEEEEeccccc
Q 013749 69 RGRNVYVQFSSHQE 82 (437)
Q Consensus 69 ~g~~l~v~~s~~~~ 82 (437)
.|++|.|.|+.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987753
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.8e-14 Score=108.71 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=66.0
Q ss_pred ceEEecCC----CCCCCHHHHHHhhhccCCeeEEEEEeeCC----ceEEEEEecC----HHH----HHHHHH--HhCCCc
Q 013749 355 KMIHLSTL----PQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFET----EEQ----ATEALV--CKHASS 416 (437)
Q Consensus 355 ~~l~v~nl----p~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~afV~f~~----~~~----A~~A~~--~l~~~~ 416 (437)
..|+|+|| |+.+++++|+.+|++||.|.+++++.|+. +|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99999999999999999999999998754 7899999996 444 899988 789999
Q ss_pred cCCcEEEEEeccC
Q 013749 417 LGGSIIRISFSQL 429 (437)
Q Consensus 417 ~~g~~l~v~~s~~ 429 (437)
|.|+.|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998543
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=5.5e-14 Score=106.60 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=70.2
Q ss_pred CCCceEEEEcCC--CccCc--------HHHHHHhccCCccceEEEEEcc--------CCeEEEEecChhHHHHHHHhhcc
Q 013749 2 TEPSKVIHVRNV--GHEIS--------ENDLLQLFQPFGVITKLVMLRA--------KNQALLQMQDVPSAINALQFYTN 63 (437)
Q Consensus 2 ~~~s~~l~V~~L--p~~~t--------e~~l~~~f~~~G~i~~v~i~~~--------~~~afV~F~~~~~A~~a~~~~~~ 63 (437)
.+||++|.|+|+ |.+.. ++||++.|++||+|.+|.|+++ +|+|||+|.+.++|.+|++.||+
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 479999999998 55554 4799999999999999999864 59999999999999999999999
Q ss_pred CCCcccCeEEEEEeccccc
Q 013749 64 VQPTIRGRNVYVQFSSHQE 82 (437)
Q Consensus 64 ~~~~~~g~~l~v~~s~~~~ 82 (437)
. .+.||.|.+.|+....
T Consensus 82 ~--~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 82 R--KFANRVVVTKYCDPDS 98 (105)
T ss_dssp C--EETTEECEEEEECHHH
T ss_pred C--EeCCCEEEEEEeCHHH
Confidence 9 9999999999976643
No 362
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=5.8e-14 Score=134.38 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEE
Q 013749 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~------~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~ 76 (437)
.|+++|||+|||..+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|.+||..||+. .|.|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~--~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK--KIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC--EECCEEEEEE
Confidence 46689999999999999999999999999999999876 599999999999999999999998 8999999999
Q ss_pred eccccc
Q 013749 77 FSSHQE 82 (437)
Q Consensus 77 ~s~~~~ 82 (437)
|+....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 987653
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.5e-13 Score=106.15 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCceEEEEcCC--CccC---cHHHHHHhccCCccceEEEEEccC----------CeEEEEecChhHHHHHHHhhccCCCc
Q 013749 3 EPSKVIHVRNV--GHEI---SENDLLQLFQPFGVITKLVMLRAK----------NQALLQMQDVPSAINALQFYTNVQPT 67 (437)
Q Consensus 3 ~~s~~l~V~~L--p~~~---te~~l~~~f~~~G~i~~v~i~~~~----------~~afV~F~~~~~A~~a~~~~~~~~~~ 67 (437)
+||++|+|+|+ |.++ -++||++.|++||+|.+|.|++++ |+|||+|.+.++|.+|++.||+. .
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr--~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR--W 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC--E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC--E
Confidence 58999999998 4333 368999999999999999998752 79999999999999999999999 9
Q ss_pred ccCeEEEEEeccccc
Q 013749 68 IRGRNVYVQFSSHQE 82 (437)
Q Consensus 68 ~~g~~l~v~~s~~~~ 82 (437)
+.||.|.+.|+....
T Consensus 96 f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 96 FAGRKVVAEVYDQER 110 (118)
T ss_dssp ETTEECEEEEECHHH
T ss_pred ECCcEEEEEEcChHh
Confidence 999999999976543
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=1.4e-13 Score=116.98 Aligned_cols=73 Identities=11% Similarity=0.254 Sum_probs=66.5
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
+++|||+|||.++|+++|+++|++||+|.+|++.++ +|||||+|.+.++|.+|+..++ . .++|+.|.|.+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~--~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-Q--KYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-C--EETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-C--eECCEEEEEEEhH
Confidence 589999999999999999999999999999999975 5999999999999999998664 3 7999999999865
Q ss_pred c
Q 013749 80 H 80 (437)
Q Consensus 80 ~ 80 (437)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=1.9e-13 Score=125.08 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=69.0
Q ss_pred cCCCcceEEecC--CCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccC---Cc--EE
Q 013749 350 CCSPTKMIHLST--LPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG---GS--II 422 (437)
Q Consensus 350 ~~~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~---g~--~l 422 (437)
...|+++|||+| |+.++|+++|+++|++||.|.++.+.+ +||||||+|.+.++|++|++.|||+.+- |+ .|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 346789999999 578999999999999999999988864 7999999999999999999999999883 55 68
Q ss_pred EEEeccC
Q 013749 423 RISFSQL 429 (437)
Q Consensus 423 ~v~~s~~ 429 (437)
+|.|++.
T Consensus 92 y~~~~~~ 98 (345)
T 3tht_A 92 YLNFVEK 98 (345)
T ss_dssp EEEECSS
T ss_pred EEEEeec
Confidence 9999853
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.8e-13 Score=99.07 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=64.0
Q ss_pred ceEEecCCC-------CCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEec
Q 013749 355 KMIHLSTLP-------QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 427 (437)
Q Consensus 355 ~~l~v~nlp-------~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s 427 (437)
+.|.|.-.+ ..+++++|+++|++||.|..+.++. +.+|||||+|.+.++|.+|++.+++ +.|++|+|+|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 455555443 4689999999999999999999984 5689999999999999999998666 67999999999
Q ss_pred cCcccc
Q 013749 428 QLQSIR 433 (437)
Q Consensus 428 ~~~~~~ 433 (437)
+.+..+
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 877543
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=5e-14 Score=106.69 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=59.4
Q ss_pred ecCCCCCCCHHHHHHhh------------hccCCeeEEEEEeeC---CceEEEEEecCHHHHHHHHHHhCCCccCCcEEE
Q 013749 359 LSTLPQDVTEEEIVSHL------------EEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIR 423 (437)
Q Consensus 359 v~nlp~~~t~~~l~~~f------------~~~G~v~~~~i~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 423 (437)
+.+||..+++++|++.| ++||.|.++.|+.+. .+|+|||+|.+.++|.+|++.|||..+.||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34566666776666555 999999999998754 389999999999999999999999999999999
Q ss_pred EEecc
Q 013749 424 ISFSQ 428 (437)
Q Consensus 424 v~~s~ 428 (437)
|+|+.
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99973
No 368
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.1e-13 Score=102.29 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=65.8
Q ss_pred cEEEEecC----CCCCCCHHHHHHHHhccCCeEEEEEecCC-----CCeEEEEeCC----HHH----HHHHHH--HhcCc
Q 013749 245 CTVLVSNL----NSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGD----GFQ----AELAVH--FLKGA 305 (437)
Q Consensus 245 ~~l~V~nl----~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~g~~fV~f~~----~~~----A~~A~~--~l~g~ 305 (437)
+.|+|+|| |+ .+++++|+++|+.||.|.+|.++.|+ +|||||+|.+ +++ |..|+. .++|.
T Consensus 3 ~kI~VgnL~~~~~~-~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTT-NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCC-CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 37999999 99 79999999999999999999999977 7899999996 444 788888 78999
Q ss_pred eeCCcEEEEEEccCC
Q 013749 306 LLFGKRLEVNFSKHP 320 (437)
Q Consensus 306 ~~~g~~l~v~~~~~~ 320 (437)
.+.|++|+|.+.+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=2.5e-13 Score=124.32 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=67.8
Q ss_pred CCCceEEEEcC--CCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCc-ccCe--EEEEE
Q 013749 2 TEPSKVIHVRN--VGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPT-IRGR--NVYVQ 76 (437)
Q Consensus 2 ~~~s~~l~V~~--Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~-~~g~--~l~v~ 76 (437)
..|+++|||+| |+..+||++|+++|++||.|.+|.+.++||||||+|.+.++|++|++.||+..+. ..|+ .+++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 57999999999 5789999999999999999999999999999999999999999999999998331 2344 57777
Q ss_pred ecc
Q 013749 77 FSS 79 (437)
Q Consensus 77 ~s~ 79 (437)
|..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 753
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=1.3e-12 Score=100.12 Aligned_cols=80 Identities=9% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCCceEEEEcCCC--cc--------CcHHHHHHhccCCccceEEEEEcc--CCeEEEEecChhHHHHHHHhhccCCCccc
Q 013749 2 TEPSKVIHVRNVG--HE--------ISENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVPSAINALQFYTNVQPTIR 69 (437)
Q Consensus 2 ~~~s~~l~V~~Lp--~~--------~te~~l~~~f~~~G~i~~v~i~~~--~~~afV~F~~~~~A~~a~~~~~~~~~~~~ 69 (437)
+.||++|.|+|+= .+ --++||++.|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.||+. .++
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~--~f~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR--WFA 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC--EET
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC--EEC
Confidence 4689999999983 22 123689999999999999999887 599999999999999999999999 999
Q ss_pred CeEEEEEecccccc
Q 013749 70 GRNVYVQFSSHQEL 83 (437)
Q Consensus 70 g~~l~v~~s~~~~~ 83 (437)
|+.|.|.|+.....
T Consensus 82 GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 82 GKMITAAYVPLPTY 95 (114)
T ss_dssp TEECEEEEECHHHH
T ss_pred CEEEEEEEEcHHHH
Confidence 99999999876544
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=92.17 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=67.2
Q ss_pred cCCCcceEEecCCCC----CCCH----HHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 350 CCSPTKMIHLSTLPQ----DVTE----EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~----~~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
..||..||.|...|. ++-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+.||.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 457888999988762 3333 7899999999999999998533 8999999999999998 9999999999
Q ss_pred EEEEeccCcccc
Q 013749 422 IRISFSQLQSIR 433 (437)
Q Consensus 422 l~v~~s~~~~~~ 433 (437)
|+|+++++.=.+
T Consensus 78 LkV~lkt~dW~~ 89 (91)
T 2dnr_A 78 ITIALKSPSGPS 89 (91)
T ss_dssp EEEEECCCSSCS
T ss_pred EEEEeCCCCccc
Confidence 999999876443
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-12 Score=94.48 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=63.3
Q ss_pred CceEEEEcCCC-------ccCcHHHHHHhccCCccceEEEEE-ccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEE
Q 013749 4 PSKVIHVRNVG-------HEISENDLLQLFQPFGVITKLVML-RAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (437)
Q Consensus 4 ~s~~l~V~~Lp-------~~~te~~l~~~f~~~G~i~~v~i~-~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v 75 (437)
..+.|.|.-.+ ..++|++|+++|++||.|.+|.|+ +.+|||||+|.+.++|.+|++.++ .+.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV----GLVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC----BCSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC----CCCCCeEEE
Confidence 34567777665 458999999999999999999998 457999999999999999999744 467999999
Q ss_pred Eeccccc
Q 013749 76 QFSSHQE 82 (437)
Q Consensus 76 ~~s~~~~ 82 (437)
.|+..+.
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9987653
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=4.3e-13 Score=101.54 Aligned_cols=66 Identities=11% Similarity=0.238 Sum_probs=56.9
Q ss_pred cCCCccCcHHHHHHhc------------cCCccceEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCCcccCeEE
Q 013749 11 RNVGHEISENDLLQLF------------QPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73 (437)
Q Consensus 11 ~~Lp~~~te~~l~~~f------------~~~G~i~~v~i~~~-----~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l 73 (437)
.|||..+++++|++.| ++||+|.+|.|+++ +|||||+|.+.++|.+|++.||+. .++|++|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~--~~~Gr~i 98 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR--WFNGQPI 98 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC--EETTEEC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC--EECCEEE
Confidence 3444556677666555 99999999999976 599999999999999999999999 9999999
Q ss_pred EEEec
Q 013749 74 YVQFS 78 (437)
Q Consensus 74 ~v~~s 78 (437)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=88.42 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCCCceEEEEcCCC----ccCcH----HHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeE
Q 013749 1 MTEPSKVIHVRNVG----HEISE----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp----~~~te----~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~ 72 (437)
|.||.-||+|.-.| .++-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |++. .+.||.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~--~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK--ELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC--EETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCe--EeCCeE
Confidence 67999999999987 34444 6788999999999999999998 8999999999999999 9999 999999
Q ss_pred EEEEecccccc
Q 013749 73 VYVQFSSHQEL 83 (437)
Q Consensus 73 l~v~~s~~~~~ 83 (437)
|+|+++.+...
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999877543
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-11 Score=92.46 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCcc-CcHHHHHHhccCCccceEEEEEccCCeEEEEecC-hhHHHHHHHhhccCCCcccCeEEEEEecc
Q 013749 3 EPSKVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD-VPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (437)
Q Consensus 3 ~~s~~l~V~~Lp~~-~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~-~~~A~~a~~~~~~~~~~~~g~~l~v~~s~ 79 (437)
++..+|+|+||+++ +++++|+++|++||+|..|.+.++...|||+|.+ .++|..|+..++...+.++|..+.+....
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 56789999999999 9999999999999999999999999999999999 89999999999877789999888887543
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.5e-11 Score=92.82 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=70.6
Q ss_pred cCCCcceEEecCCCCC-CCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecC-HHHHHHHHHHhC--CCccCCcEEEEE
Q 013749 350 CCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET-EEQATEALVCKH--ASSLGGSIIRIS 425 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~-~~~A~~A~~~l~--~~~~~g~~l~v~ 425 (437)
..++++.|+|+||+.. +++++|+++|++||.|.+|.+.. +...|||+|.+ .++|..|++.+| +..|.|..+.++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 3467899999999999 99999999999999999999975 55579999999 899999999995 678889999998
Q ss_pred eccCccc
Q 013749 426 FSQLQSI 432 (437)
Q Consensus 426 ~s~~~~~ 432 (437)
..+-.++
T Consensus 92 vL~GeeE 98 (121)
T 1owx_A 92 VLEGEVE 98 (121)
T ss_dssp ECCHHHH
T ss_pred ECCCHHH
Confidence 7665443
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3e-11 Score=86.47 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=63.7
Q ss_pred cCCCcceEEecCCCCC-----CCH----HHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 013749 350 CCSPTKMIHLSTLPQD-----VTE----EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 420 (437)
Q Consensus 350 ~~~~~~~l~v~nlp~~-----~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~ 420 (437)
..||..||.|..++.. +-+ .+|.+.|++||.|..+++..+ + +||+|.+.++|.+|++ |||..+.||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--~--~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--Q--MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--E--EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--c--EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 5688999999988642 322 679999999999999999853 3 9999999999999998 999999999
Q ss_pred EEEEEecc
Q 013749 421 IIRISFSQ 428 (437)
Q Consensus 421 ~l~v~~s~ 428 (437)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999854
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=6.4e-11 Score=84.75 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=64.8
Q ss_pred CCCCceEEEEcCCCcc-----CcH----HHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCe
Q 013749 1 MTEPSKVIHVRNVGHE-----ISE----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (437)
Q Consensus 1 ~~~~s~~l~V~~Lp~~-----~te----~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~ 71 (437)
|.||.-||+|.-++.+ +-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |++. .++||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~--~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM--KVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS--EETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe--eeCCe
Confidence 6799999999999743 333 5688899999999999999998 9999999999999999 9999 99999
Q ss_pred EEEEEe
Q 013749 72 NVYVQF 77 (437)
Q Consensus 72 ~l~v~~ 77 (437)
.|+|++
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999996
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=5.2e-09 Score=91.18 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=64.0
Q ss_pred ceEEecCCCC-----CCCHHHHHHhhhccCCeeEEEEEee--------CCceEEEEEecCHHHHHHHHHHhCCCccCCcE
Q 013749 355 KMIHLSTLPQ-----DVTEEEIVSHLEEHGSIVNTKLFEM--------NGKKQALVLFETEEQATEALVCKHASSLGGSI 421 (437)
Q Consensus 355 ~~l~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~i~~~--------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~ 421 (437)
..+.+.|+-. +-.+++|++.|++||.|.+++++.+ .++|++||+|.+.++|.+|++.|||+.+.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 4556666522 2246899999999999999999844 23789999999999999999999999999999
Q ss_pred EEEEeccCcc
Q 013749 422 IRISFSQLQS 431 (437)
Q Consensus 422 l~v~~s~~~~ 431 (437)
|.++|+....
T Consensus 205 i~~~~~~~~~ 214 (222)
T 3dxb_A 205 VVAEVYDQER 214 (222)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999986543
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.2e-07 Score=69.06 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=65.9
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhcc-----CCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSLY-----GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 315 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 315 (437)
..++|-+.|||. .+++..|+.+..++ |.+.++.+.++ -+-|+|+|.+...|.+|.-.|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipD-tvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSD-KVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCT-TCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCC-CCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 356899999995 89999999999999 99999988888 6779999999999999999999999999999986
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=7.2e-08 Score=70.21 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=65.3
Q ss_pred cceEEecCCCCCCCHHHHHHhhhcc-----CCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEE
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEH-----GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 425 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 425 (437)
.++|-+-|||+.+++..|+.+.+++ |.+..+.+.+ +.+=|+|+|.+...|-+|.-.|+|..|.||.|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5889999999999999999999999 9999988875 56679999999999999999999999999999985
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=7.4e-08 Score=83.80 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=63.8
Q ss_pred CceEEEEcCCC-----ccCcHHHHHHhccCCccceEEEEEc----------cCCeEEEEecChhHHHHHHHhhccCCCcc
Q 013749 4 PSKVIHVRNVG-----HEISENDLLQLFQPFGVITKLVMLR----------AKNQALLQMQDVPSAINALQFYTNVQPTI 68 (437)
Q Consensus 4 ~s~~l~V~~Lp-----~~~te~~l~~~f~~~G~i~~v~i~~----------~~~~afV~F~~~~~A~~a~~~~~~~~~~~ 68 (437)
+++.+.+.++- .+-.+++|++.|++||.|.++.|.+ .+|++||+|.+.++|.+|++.|++. .+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr--~~ 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR--WF 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC--BS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc--eE
Confidence 44556666552 2245688999999999999999983 3589999999999999999999999 99
Q ss_pred cCeEEEEEeccccc
Q 013749 69 RGRNVYVQFSSHQE 82 (437)
Q Consensus 69 ~g~~l~v~~s~~~~ 82 (437)
.||.|.+.|+....
T Consensus 201 ~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 201 AGRKVVAEVYDQER 214 (222)
T ss_dssp SSSBCEEEECCHHH
T ss_pred CCeEEEEEEcCHHH
Confidence 99999999976543
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1e-05 Score=58.63 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=59.0
Q ss_pred ceEEEEcCCCccCcHHHHHHhccC-----CccceEEEEEccCCeEEEEecChhHHHHHHHhhccCCCcccCeEEEEEe
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQP-----FGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~-----~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~~~~~~g~~l~v~~ 77 (437)
.++|.|.|||++++++.|.-+|+. -|+|.++.... +-|+|+|.+.+.|++.++ ...+.+.|.+|.|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~---k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLA---QADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHT---CSCCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhc---CCcceecCeEEEEEc
Confidence 478999999999999999999975 37899999887 779999999999999987 334589999998875
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=5.7e-06 Score=60.31 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=64.5
Q ss_pred ceEEecCCCCCC-C----HHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEeccC
Q 013749 355 KMIHLSTLPQDV-T----EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 429 (437)
Q Consensus 355 ~~l~v~nlp~~~-t----~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~~ 429 (437)
++|.|.||+.++ . .+.++.+|..|+.+.....++ +-.=..|.|.++++|.+|...||+..+.|+.|+|.|+++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 689999998865 2 268899999999998877773 434479999999999999999999999999999999986
Q ss_pred cc
Q 013749 430 QS 431 (437)
Q Consensus 430 ~~ 431 (437)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=9.9e-06 Score=59.04 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=64.2
Q ss_pred cEEEEecCCCCCCCH----HHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 013749 245 CTVLVSNLNSDRIDE----DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 320 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~----~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 320 (437)
++|+|.||+.+-... +.++++|..|+++.....++.- .-..|.|.++++|.+|-..|++..+.|+.+++.++.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 489999998742233 4668999999999999888863 46899999999999999999999999999999998844
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.00015 Score=52.60 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=57.7
Q ss_pred CccEEEEecCCCCCCCHHHHHHHHhc-----cCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 013749 243 DRCTVLVSNLNSDRIDEDKLFNLFSL-----YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 317 (437)
Q Consensus 243 ~~~~l~V~nl~~~~~t~~~l~~~F~~-----~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 317 (437)
-..+|.|.|||+ .++++.|.-+|+. -|.|.++.... +.|+|.|.+...|+..++ -....|.|..|.|...
T Consensus 7 ~~~~I~V~~lPp-~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 7 GGVAVEVRGLPP-AVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCEEEEESCCT-TSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred CccEEEEECCCC-CCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 345899999998 5999999999987 25688888876 689999999999999887 3367788888888653
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.89 E-value=3.2e-05 Score=55.26 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=47.5
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhc
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~ 62 (437)
+++++| +.|++|.-.||.++|++||.| .|+.+.|- .|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-eEEEEecCHHHHHHHHHhcc
Confidence 456777 999999999999999999965 67777764 69999999999999999653
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.86 E-value=2.8e-05 Score=55.75 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=47.1
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhc
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~ 62 (437)
+.+++| +.|++|.-.||.++|++||.| .|..+-|- .|||.|.+.+.|..|++.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-eEEEEecCHHHHHHHHHhcc
Confidence 456666 999999999999999999954 67777664 69999999999999999654
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.0002 Score=53.81 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=57.0
Q ss_pred ccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCc-EEEEEE
Q 013749 244 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK-RLEVNF 316 (437)
Q Consensus 244 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 316 (437)
.+.|.|.++|+ .....|...|++||.|.+... .....+..|.|.+..+|++|+. .||..+.|. -|-|.+
T Consensus 24 ~~wVtVFGFp~--~~~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQ--ASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCG--GGHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 45899999997 357899999999999998876 3337899999999999999999 799999764 344443
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.46 E-value=0.00084 Score=48.11 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=60.9
Q ss_pred eEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC------ceEEEEEecCHHHHHHHHHHhCCCccCC-----cEEEE
Q 013749 356 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG------KKQALVLFETEEQATEALVCKHASSLGG-----SIIRI 424 (437)
Q Consensus 356 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~~~g-----~~l~v 424 (437)
.|.|++||+.+||+++.+.++....+........+. -.-|+|.|.+.+++..-.+.++|+.+.+ .+-.|
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~V 82 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIV 82 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEE
Confidence 588999999999999999999998876665544321 2369999999999999999999998753 25568
Q ss_pred EeccCcc
Q 013749 425 SFSQLQS 431 (437)
Q Consensus 425 ~~s~~~~ 431 (437)
+||..+-
T Consensus 83 E~AP~qk 89 (91)
T 1uw4_A 83 EFAPFQK 89 (91)
T ss_dssp EECSSCC
T ss_pred EEcCCCc
Confidence 8887653
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.43 E-value=0.00025 Score=50.67 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=47.0
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~ 413 (437)
.++++| +.|.++...||.++|++||.| .|+++. -.-|||-|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 377888 999999999999999999954 566664 4579999999999999998763
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00069 Score=50.89 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=56.4
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCc-EEEEEe
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISF 426 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~ 426 (437)
.++|.|-+.|++. ...|.+.|++||.|.+.... .+.++-.|.|.++.+|++|| ..||..+.|. .|=|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 4789999998874 77888899999999888763 45779999999999999998 6699999864 344443
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.41 E-value=0.00046 Score=49.46 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=50.1
Q ss_pred eEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC--------CeEEEEecChhHHHHHHHhhccC
Q 013749 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK--------NQALLQMQDVPSAINALQFYTNV 64 (437)
Q Consensus 6 ~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~--------~~afV~F~~~~~A~~a~~~~~~~ 64 (437)
..|.||.||+..||+++.+.+.+...+.-...+.++ .-|||.|.+.+++....+.++++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 367899999999999999999998876655555543 55999999999999999988877
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.32 E-value=0.00026 Score=50.80 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=46.7
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhC
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 413 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~ 413 (437)
++++| +.|.++...||.++|++|| =..|+++. -.-|||-|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 67888 9999999999999999999 44577764 4579999999999999998774
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.94 E-value=0.00033 Score=66.36 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=44.0
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC-CeEEEEecChhHHHHHHHh
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-NQALLQMQDVPSAINALQF 60 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~-~~afV~F~~~~~A~~a~~~ 60 (437)
.|+|+|. .|...++++|.++|++||+|.++...+++ .||.|+|.+.++|..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4899998 69999999999999999999999999886 5899999999999988663
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.70 E-value=0.002 Score=49.05 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=56.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHhccCCeEE-EEEec------------------CCCCeEEEEeCCHHHHHHHHHHhcCc
Q 013749 245 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIR-IKLLR------------------NKPDHALVQMGDGFQAELAVHFLKGA 305 (437)
Q Consensus 245 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~-v~i~~------------------~~~g~~fV~f~~~~~A~~A~~~l~g~ 305 (437)
..|.|.++|+ .....+.+.|++||.|.. +...+ ...++.-|+|++..+|.+|++ .||.
T Consensus 8 ~~VtVFGFp~--~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPE--TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp CEEEEECCCG--GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred eEEEEEecCH--HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4799999996 467889999999999865 21110 125688999999999999999 8999
Q ss_pred eeCCcEEEEEEcc
Q 013749 306 LLFGKRLEVNFSK 318 (437)
Q Consensus 306 ~~~g~~l~v~~~~ 318 (437)
.+.|.-|-|.+-+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999866666543
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.59 E-value=0.0048 Score=44.42 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=56.6
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCC------ceEEEEEecCHHHHHHHHHHhCCCccCC-----cEE
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG------KKQALVLFETEEQATEALVCKHASSLGG-----SII 422 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~~~g-----~~l 422 (437)
+-.|-|+.||+.+||+++.+.+++.-.+........+. -.-|+|.|.+.++...-.+..+|..+-+ -+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 35689999999999999998888765543222211110 2359999999999999999999988753 266
Q ss_pred EEEeccCc
Q 013749 423 RISFSQLQ 430 (437)
Q Consensus 423 ~v~~s~~~ 430 (437)
.|+||..+
T Consensus 89 ~VE~APyq 96 (97)
T 2l08_A 89 VVEFAPFQ 96 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 78887643
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.57 E-value=0.0011 Score=62.78 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=41.8
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHH
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 410 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~ 410 (437)
.++|+|. .|.++++.+|.++|++||.|.++....++ ..||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999987532 3599999999999987753
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.44 E-value=0.0024 Score=45.94 Aligned_cols=60 Identities=10% Similarity=0.235 Sum_probs=44.7
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccC--------CeEEEEecChhHHHHHHHhhccC
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK--------NQALLQMQDVPSAINALQFYTNV 64 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~--------~~afV~F~~~~~A~~a~~~~~~~ 64 (437)
|-.|.||.||+.+||+++.+.+.+.=++.-...+.++ .-|||.|.+.++.....+..+++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 4568899999999999999888765333211112221 45999999999999999977776
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.11 E-value=0.0039 Score=47.47 Aligned_cols=74 Identities=14% Similarity=0.338 Sum_probs=55.4
Q ss_pred ceEEecCCCCCCCHHHHHHhhhccCCeeE-EEE----------------Eee-CCceEEEEEecCHHHHHHHHHHhCCCc
Q 013749 355 KMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKL----------------FEM-NGKKQALVLFETEEQATEALVCKHASS 416 (437)
Q Consensus 355 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i----------------~~~-~~~~~afV~f~~~~~A~~A~~~l~~~~ 416 (437)
..|.|-+.|.+. ...+.+.|++||.|.+ ... ++- .+.++.-|.|+++.+|++|+ .-||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 567788887765 5667778999999966 211 110 13568899999999999998 889999
Q ss_pred cCCcEEEEEeccCc
Q 013749 417 LGGSIIRISFSQLQ 430 (437)
Q Consensus 417 ~~g~~l~v~~s~~~ 430 (437)
+.|..|-|..-...
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99987777765443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.52 E-value=0.15 Score=49.33 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=47.5
Q ss_pred ceEEEEcCCCccCcHHHHHHhccCCccceEEEEEccCCeEEEEecChhHHHHHHHhhccC
Q 013749 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64 (437)
Q Consensus 5 s~~l~V~~Lp~~~te~~l~~~f~~~G~i~~v~i~~~~~~afV~F~~~~~A~~a~~~~~~~ 64 (437)
+.+++|+ .|+.|...||.++|+.||.| +|+.+.+ ..|||.|.+.++|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-CeEEEEECCHHHHHHHHHHHHhC
Confidence 4567776 99999999999999999965 6766655 46999999999999999987543
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.84 E-value=0.37 Score=46.59 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=47.2
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHhCC
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 414 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~ 414 (437)
..+++|+ +|..+...+|.++|+.||.| +|+++ +...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3678887 89999999999999999954 56665 466799999999999999998853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.21 E-value=9.4 Score=25.69 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=44.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHhccCC-----eEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 013749 246 TVLVSNLNSDRIDEDKLFNLFSLYGN-----IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 318 (437)
Q Consensus 246 ~l~V~nl~~~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 318 (437)
+++|..=-.+.+...+|...+..-+. |-.+.+..+ +.||+-.. ..|..+++.|++..+.|+.+.+..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~---~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN---ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS---CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC---cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 56664333346777888887776554 566777654 89999854 55778899999999999999887653
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.70 E-value=32 Score=23.74 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=45.9
Q ss_pred cceEEecCCCCCCCHHHHHHhhhccCCeeEEEEEeeCCceEEEEEecCHHHHHHHHHHh
Q 013749 354 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 412 (437)
Q Consensus 354 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l 412 (437)
.+-|.|-|+|..+-..++--.....|---.+..+ .|.|.|.|.+.++-..|++.|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi----dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI----DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC----SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee----cCeeEEEecCChHHHHHHHHH
Confidence 4788999999988887777666777777777775 577999999999999999876
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=56.65 E-value=26 Score=23.43 Aligned_cols=60 Identities=7% Similarity=0.193 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhhhccCCe-----eEEEEEeeCCceEEEEEecCHHHHHHHHHHhCCCccCCcEEEEEecc
Q 013749 364 QDVTEEEIVSHLEEHGSI-----VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 428 (437)
Q Consensus 364 ~~~t~~~l~~~f~~~G~v-----~~~~i~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~s~ 428 (437)
..+...+|...+..-+.+ -.+.+. ..+.||+-... .|..+++.|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 367778888888766554 445553 44788887765 6788999999999999999998765
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=55.30 E-value=23 Score=28.24 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=37.8
Q ss_pred ceEEecCCCC-C--------CCHHHHHHhh--hccCCeeEEEEEeeCC-ceEEEEEecCHHHH
Q 013749 355 KMIHLSTLPQ-D--------VTEEEIVSHL--EEHGSIVNTKLFEMNG-KKQALVLFETEEQA 405 (437)
Q Consensus 355 ~~l~v~nlp~-~--------~t~~~l~~~f--~~~G~v~~~~i~~~~~-~~~afV~f~~~~~A 405 (437)
.++.|.|+|. . .+.++|++.| +.|..+...-+....+ .|+|.|+|.+--..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHH
Confidence 4677888886 2 4468999977 9999987666654444 78999999986544
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.25 E-value=96 Score=21.34 Aligned_cols=69 Identities=12% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCccEEEEecCCCCCCCHHHHHHHHhccCCeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 013749 242 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 316 (437)
Q Consensus 242 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 316 (437)
..+|-+.|-|+|. .+-..++.-.....|---.|... .|.|.+.|.+.++-..|++.|-+.. +.+|.+..
T Consensus 10 kqnclikiinipq-gtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhn--nnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQ-GTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHN--NNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCT-TCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETT--TTEEEEEE
T ss_pred hhCcEEEEEecCC-CceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcC--CCEEEEEE
Confidence 3457889999998 57777777666777765566554 4689999999999999998875432 33454443
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.70 E-value=63 Score=25.73 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.2
Q ss_pred EEEEcCCCcc---------CcHHHHHHhc--cCCccceEEEEEcc----CCeEEEEecCh-hHHHHHHH
Q 013749 7 VIHVRNVGHE---------ISENDLLQLF--QPFGVITKLVMLRA----KNQALLQMQDV-PSAINALQ 59 (437)
Q Consensus 7 ~l~V~~Lp~~---------~te~~l~~~f--~~~G~i~~v~i~~~----~~~afV~F~~~-~~A~~a~~ 59 (437)
.+.|-|+|.. .+..+|++.| +.|.++. |+.+-+ .|+|.|.|.+. ..=..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 5678898872 4457899977 9999874 444432 37899999885 33334433
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.90 E-value=15 Score=28.71 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=17.1
Q ss_pred HHHHHhhhccCCeeEEEEEeeCCceEEEEEec
Q 013749 369 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFE 400 (437)
Q Consensus 369 ~~l~~~f~~~G~v~~~~i~~~~~~~~afV~f~ 400 (437)
+|+.++|...|.|.... ..||||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 45667777777764433 36899999876
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.34 E-value=2.1e+02 Score=19.83 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=25.7
Q ss_pred eEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC
Q 013749 272 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304 (437)
Q Consensus 272 v~~v~i~~~~~g~~fV~f~~~~~A~~A~~~l~g 304 (437)
|.++.+...-+||.||++...++...+++...|
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 666655544599999999999988888876665
Done!