Query 013752
Match_columns 437
No_of_seqs 205 out of 1206
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.3 1.9E-12 4.2E-17 98.3 5.6 52 232-283 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.3 3.9E-12 8.4E-17 96.9 5.8 56 231-286 3-59 (60)
3 smart00353 HLH helix loop heli 99.2 1.7E-11 3.7E-16 91.8 5.9 51 237-287 1-52 (53)
4 KOG1318 Helix loop helix trans 98.7 3.4E-08 7.4E-13 102.7 9.1 64 226-289 227-292 (411)
5 cd04897 ACT_ACR_3 ACT domain-c 98.4 4.6E-06 9.9E-11 68.4 10.2 69 365-433 3-74 (75)
6 KOG1319 bHLHZip transcription 98.4 5.5E-07 1.2E-11 85.0 5.5 68 229-296 59-131 (229)
7 KOG3960 Myogenic helix-loop-he 98.1 1E-05 2.2E-10 79.5 8.4 65 231-296 117-182 (284)
8 cd04895 ACT_ACR_1 ACT domain-c 98.1 3.1E-05 6.6E-10 63.0 9.6 54 364-417 2-55 (72)
9 cd04927 ACT_ACR-like_2 Second 98.0 3.2E-05 6.9E-10 62.7 8.8 68 364-432 1-72 (76)
10 cd04896 ACT_ACR-like_3 ACT dom 98.0 6.3E-05 1.4E-09 61.7 9.8 67 365-432 2-73 (75)
11 cd04900 ACT_UUR-like_1 ACT dom 97.9 0.00017 3.6E-09 57.5 10.7 52 365-416 3-55 (73)
12 KOG4304 Transcriptional repres 97.9 1E-05 2.2E-10 79.9 4.0 60 229-288 29-94 (250)
13 KOG2483 Upstream transcription 97.9 3.9E-05 8.5E-10 75.1 8.0 63 231-293 58-121 (232)
14 cd04925 ACT_ACR_2 ACT domain-c 97.8 0.00026 5.5E-09 56.9 10.7 67 365-431 2-72 (74)
15 KOG3561 Aryl-hydrocarbon recep 97.8 1.9E-05 4.2E-10 88.3 5.0 52 233-285 21-75 (803)
16 cd04928 ACT_TyrKc Uncharacteri 97.7 0.00036 7.9E-09 56.3 9.0 64 365-431 3-67 (68)
17 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.0011 2.5E-08 51.1 9.8 52 365-416 2-53 (70)
18 KOG4029 Transcription factor H 97.5 9.9E-05 2.1E-09 71.4 4.4 63 231-293 108-172 (228)
19 KOG2588 Predicted DNA-binding 97.5 6.3E-05 1.4E-09 84.8 3.4 64 230-294 274-337 (953)
20 cd04926 ACT_ACR_4 C-terminal 97.4 0.0023 4.9E-08 51.0 9.9 66 365-432 3-68 (72)
21 KOG0561 bHLH transcription fac 97.3 0.00018 3.8E-09 72.6 3.6 58 232-289 60-117 (373)
22 PF13740 ACT_6: ACT domain; PD 97.2 0.0033 7.2E-08 50.6 9.3 68 363-434 2-69 (76)
23 PF01842 ACT: ACT domain; Int 97.2 0.0023 4.9E-08 48.4 7.7 65 364-431 1-65 (66)
24 cd04873 ACT_UUR-ACR-like ACT d 96.9 0.014 3E-07 44.6 9.9 51 365-415 2-52 (70)
25 cd04893 ACT_GcvR_1 ACT domains 96.8 0.013 2.9E-07 47.3 9.9 66 364-433 2-67 (77)
26 KOG4447 Transcription factor T 96.8 0.0013 2.7E-08 60.9 4.2 61 226-286 72-132 (173)
27 PRK00275 glnD PII uridylyl-tra 96.8 0.01 2.2E-07 68.1 12.3 81 353-433 802-887 (895)
28 cd04875 ACT_F4HF-DF N-terminal 96.7 0.018 4E-07 45.6 9.6 71 365-435 1-71 (74)
29 PLN03217 transcription factor 96.7 0.0033 7.2E-08 53.0 5.4 54 244-297 19-76 (93)
30 PF13291 ACT_4: ACT domain; PD 96.7 0.0085 1.8E-07 48.0 7.4 52 363-414 6-59 (80)
31 PRK05007 PII uridylyl-transfer 96.6 0.0098 2.1E-07 68.2 10.4 73 361-433 806-880 (884)
32 PRK05092 PII uridylyl-transfer 96.6 0.015 3.3E-07 67.0 12.0 81 353-433 831-916 (931)
33 cd04869 ACT_GcvR_2 ACT domains 96.6 0.028 6.2E-07 44.7 10.0 66 366-434 2-73 (81)
34 PRK04374 PII uridylyl-transfer 96.5 0.022 4.7E-07 65.4 11.8 80 353-432 784-867 (869)
35 PRK01759 glnD PII uridylyl-tra 96.5 0.013 2.8E-07 67.0 9.9 70 362-431 782-853 (854)
36 PRK00194 hypothetical protein; 96.4 0.024 5.1E-07 46.6 8.8 70 363-434 3-72 (90)
37 cd04872 ACT_1ZPV ACT domain pr 96.4 0.02 4.3E-07 47.1 8.3 69 364-434 2-70 (88)
38 cd04870 ACT_PSP_1 CT domains f 96.3 0.038 8.2E-07 44.1 9.1 67 366-435 2-68 (75)
39 PRK03059 PII uridylyl-transfer 96.2 0.024 5.1E-07 64.9 10.2 70 362-431 785-854 (856)
40 TIGR01693 UTase_glnD [Protein- 96.1 0.034 7.3E-07 63.4 11.0 73 361-433 666-742 (850)
41 cd04887 ACT_MalLac-Enz ACT_Mal 96.1 0.041 8.8E-07 43.0 8.0 61 366-429 2-63 (74)
42 PRK03381 PII uridylyl-transfer 96.0 0.038 8.2E-07 62.7 10.6 71 361-432 597-667 (774)
43 TIGR01693 UTase_glnD [Protein- 96.0 0.035 7.6E-07 63.3 10.4 70 362-431 778-849 (850)
44 PRK03381 PII uridylyl-transfer 95.9 0.036 7.8E-07 62.8 10.0 66 362-430 706-771 (774)
45 cd04886 ACT_ThrD-II-like C-ter 95.8 0.065 1.4E-06 40.5 7.8 61 366-429 1-66 (73)
46 PRK01759 glnD PII uridylyl-tra 95.6 0.083 1.8E-06 60.6 11.1 80 352-432 664-749 (854)
47 PRK00275 glnD PII uridylyl-tra 95.5 0.072 1.6E-06 61.4 10.6 71 362-432 703-778 (895)
48 PRK05007 PII uridylyl-transfer 95.5 0.088 1.9E-06 60.6 11.2 80 352-432 688-773 (884)
49 cd04888 ACT_PheB-BS C-terminal 95.3 0.078 1.7E-06 41.4 7.1 64 365-430 2-66 (76)
50 PRK04374 PII uridylyl-transfer 95.2 0.085 1.8E-06 60.7 9.7 72 361-432 688-760 (869)
51 PRK03059 PII uridylyl-transfer 95.2 0.11 2.3E-06 59.7 10.4 72 361-432 676-750 (856)
52 KOG3910 Helix loop helix trans 95.2 0.065 1.4E-06 57.7 7.9 57 231-289 525-585 (632)
53 PRK05092 PII uridylyl-transfer 95.1 0.14 3E-06 59.3 11.1 79 353-431 720-804 (931)
54 COG2844 GlnD UTP:GlnB (protein 95.0 0.088 1.9E-06 59.7 8.7 75 353-429 779-855 (867)
55 cd02116 ACT ACT domains are co 94.5 0.22 4.7E-06 34.0 6.9 35 366-400 1-35 (60)
56 PRK04435 hypothetical protein; 94.4 0.2 4.3E-06 45.8 8.2 69 359-429 65-134 (147)
57 cd04876 ACT_RelA-SpoT ACT dom 94.4 0.2 4.4E-06 36.1 6.8 48 366-413 1-49 (71)
58 cd04881 ACT_HSDH-Hom ACT_HSDH_ 93.7 0.25 5.5E-06 37.8 6.4 48 364-411 1-50 (79)
59 cd04877 ACT_TyrR N-terminal AC 93.5 0.26 5.6E-06 39.1 6.2 46 365-413 2-47 (74)
60 cd04878 ACT_AHAS N-terminal AC 93.5 0.48 1E-05 35.5 7.5 62 365-430 2-65 (72)
61 PRK13011 formyltetrahydrofolat 93.4 0.64 1.4E-05 47.0 10.4 71 363-434 7-77 (286)
62 PRK06027 purU formyltetrahydro 93.2 0.7 1.5E-05 46.6 10.4 70 362-434 5-77 (286)
63 KOG3898 Transcription factor N 93.2 0.079 1.7E-06 52.7 3.4 58 229-286 69-127 (254)
64 cd04880 ACT_AAAH-PDT-like ACT 93.1 0.65 1.4E-05 36.7 8.1 64 367-430 3-67 (75)
65 cd04874 ACT_Af1403 N-terminal 92.8 0.79 1.7E-05 34.5 7.8 60 365-429 2-62 (72)
66 PRK08577 hypothetical protein; 92.6 1 2.3E-05 40.1 9.6 67 362-430 55-123 (136)
67 TIGR00655 PurU formyltetrahydr 92.3 0.97 2.1E-05 45.6 9.9 69 365-433 2-71 (280)
68 cd04884 ACT_CBS C-terminal ACT 92.1 0.97 2.1E-05 35.4 7.8 62 366-430 2-66 (72)
69 cd04882 ACT_Bt0572_2 C-termina 91.9 0.95 2.1E-05 33.9 7.2 56 366-429 2-59 (65)
70 cd04903 ACT_LSD C-terminal ACT 91.8 1.1 2.4E-05 33.5 7.5 58 366-429 2-61 (71)
71 cd04894 ACT_ACR-like_1 ACT dom 91.7 1 2.2E-05 36.4 7.3 65 365-429 2-66 (69)
72 cd04879 ACT_3PGDH-like ACT_3PG 91.6 1.1 2.4E-05 33.3 7.4 59 366-430 2-62 (71)
73 KOG3560 Aryl-hydrocarbon recep 91.6 0.1 2.2E-06 56.8 2.2 41 240-280 33-75 (712)
74 cd04905 ACT_CM-PDT C-terminal 91.6 2 4.3E-05 34.5 9.2 62 365-429 3-65 (80)
75 PRK07334 threonine dehydratase 91.3 0.96 2.1E-05 47.3 8.9 64 363-429 326-394 (403)
76 PRK13010 purU formyltetrahydro 91.2 1.3 2.7E-05 45.0 9.4 70 363-435 9-82 (289)
77 cd04931 ACT_PAH ACT domain of 90.3 1.9 4.2E-05 36.4 8.2 67 364-434 15-82 (90)
78 cd04908 ACT_Bt0572_1 N-termina 90.3 2.6 5.5E-05 32.6 8.4 45 365-411 3-47 (66)
79 cd04909 ACT_PDH-BS C-terminal 90.0 2.3 5E-05 32.7 7.9 36 364-399 2-37 (69)
80 cd04883 ACT_AcuB C-terminal AC 90.0 3.4 7.5E-05 31.7 8.9 60 365-430 3-64 (72)
81 cd04904 ACT_AAAH ACT domain of 89.0 2.7 5.8E-05 33.7 7.8 60 366-430 3-63 (74)
82 cd04889 ACT_PDH-BS-like C-term 88.6 2.1 4.4E-05 31.8 6.5 44 366-409 1-45 (56)
83 COG2844 GlnD UTP:GlnB (protein 88.2 2.7 5.7E-05 48.3 9.7 61 356-416 677-738 (867)
84 CHL00100 ilvH acetohydroxyacid 88.0 2.3 5E-05 40.3 7.9 69 364-434 3-71 (174)
85 cd04885 ACT_ThrD-I Tandem C-te 87.6 3.2 7E-05 32.4 7.3 59 367-429 2-61 (68)
86 PF13710 ACT_5: ACT domain; PD 87.0 1.5 3.3E-05 34.4 5.1 59 372-432 1-59 (63)
87 PRK11895 ilvH acetolactate syn 86.9 2.6 5.6E-05 39.4 7.4 64 365-432 4-69 (161)
88 TIGR00119 acolac_sm acetolacta 86.8 2.5 5.3E-05 39.4 7.2 64 365-432 3-68 (157)
89 PRK06737 acetolactate synthase 86.5 2.4 5.2E-05 35.1 6.2 67 364-432 3-69 (76)
90 PRK11152 ilvM acetolactate syn 86.1 3.8 8.1E-05 33.8 7.2 67 364-433 4-70 (76)
91 PRK13562 acetolactate synthase 84.9 2.8 6E-05 35.5 5.9 67 365-432 4-70 (84)
92 PRK10872 relA (p)ppGpp synthet 84.7 4.7 0.0001 46.1 9.5 75 353-430 651-732 (743)
93 KOG3558 Hypoxia-inducible fact 84.3 1.1 2.3E-05 50.4 4.1 43 238-280 52-96 (768)
94 cd04929 ACT_TPH ACT domain of 83.9 9.1 0.0002 31.1 8.4 58 368-430 5-63 (74)
95 cd04901 ACT_3PGDH C-terminal A 83.9 1 2.2E-05 34.3 2.8 59 366-430 2-60 (69)
96 COG0788 PurU Formyltetrahydrof 83.2 6.4 0.00014 40.0 8.7 71 362-432 6-76 (287)
97 PRK11589 gcvR glycine cleavage 83.2 8.3 0.00018 36.9 9.1 69 364-435 96-170 (190)
98 PRK11589 gcvR glycine cleavage 83.0 3.7 8.1E-05 39.2 6.8 66 362-431 7-72 (190)
99 PRK11092 bifunctional (p)ppGpp 82.4 6.3 0.00014 44.8 9.3 74 353-429 611-690 (702)
100 cd04902 ACT_3PGDH-xct C-termin 82.1 4.9 0.00011 30.7 6.0 59 366-430 2-62 (73)
101 TIGR00691 spoT_relA (p)ppGpp s 81.1 7.8 0.00017 43.8 9.4 62 353-414 595-662 (683)
102 KOG4395 Transcription factor A 80.6 2.7 5.9E-05 42.2 5.0 55 232-286 174-229 (285)
103 cd04930 ACT_TH ACT domain of t 80.1 11 0.00023 33.3 8.1 62 364-430 42-104 (115)
104 COG4492 PheB ACT domain-contai 79.9 8.5 0.00018 35.5 7.5 67 362-430 71-138 (150)
105 PF05088 Bac_GDH: Bacterial NA 79.3 11 0.00023 46.5 10.3 72 362-434 488-564 (1528)
106 cd04906 ACT_ThrD-I_1 First of 77.6 18 0.00039 29.6 8.3 62 364-429 2-64 (85)
107 PRK08178 acetolactate synthase 77.4 11 0.00023 32.8 7.0 68 362-432 7-74 (96)
108 cd04922 ACT_AKi-HSDH-ThrA_2 AC 77.4 16 0.00035 27.3 7.4 58 366-431 4-64 (66)
109 KOG3559 Transcriptional regula 76.6 2.2 4.8E-05 45.5 3.2 43 239-281 8-52 (598)
110 PRK08198 threonine dehydratase 75.9 15 0.00032 38.4 9.0 66 361-429 325-395 (404)
111 cd04937 ACT_AKi-DapG-BS_2 ACT 75.5 19 0.0004 27.6 7.4 51 372-432 13-63 (64)
112 cd04919 ACT_AK-Hom3_2 ACT doma 72.1 27 0.00059 26.2 7.5 52 372-431 13-64 (66)
113 TIGR01127 ilvA_1Cterm threonin 71.3 23 0.0005 36.6 9.1 67 361-430 303-374 (380)
114 PRK00227 glnD PII uridylyl-tra 70.5 20 0.00044 40.8 9.1 69 361-431 544-613 (693)
115 PRK06382 threonine dehydratase 69.0 23 0.00051 37.2 8.7 64 363-429 330-398 (406)
116 cd04918 ACT_AK1-AT_2 ACT domai 68.8 17 0.00037 28.0 5.9 52 372-431 12-63 (65)
117 cd04916 ACT_AKiii-YclM-BS_2 AC 65.2 46 0.00099 24.8 7.5 53 372-432 13-65 (66)
118 cd04915 ACT_AK-Ectoine_2 ACT d 65.1 22 0.00048 27.8 5.8 51 373-431 14-64 (66)
119 cd04920 ACT_AKiii-DAPDC_2 ACT 63.7 30 0.00064 26.7 6.3 50 372-431 12-61 (63)
120 cd04892 ACT_AK-like_2 ACT doma 62.9 45 0.00096 24.0 6.9 59 365-431 2-63 (65)
121 PRK08526 threonine dehydratase 61.8 42 0.00092 35.5 8.9 66 361-429 324-394 (403)
122 KOG4447 Transcription factor T 61.7 10 0.00022 35.7 3.8 44 239-282 29-72 (173)
123 PRK11899 prephenate dehydratas 61.2 53 0.0012 33.3 9.2 64 364-430 195-259 (279)
124 COG3830 ACT domain-containing 60.9 21 0.00045 30.7 5.2 67 363-431 3-69 (90)
125 cd04924 ACT_AK-Arch_2 ACT doma 59.4 62 0.0014 23.9 7.3 53 372-432 13-65 (66)
126 PF02120 Flg_hook: Flagellar h 57.0 32 0.00069 27.6 5.6 47 353-399 27-79 (85)
127 PF13840 ACT_7: ACT domain ; P 55.8 40 0.00087 26.3 5.8 56 362-428 5-64 (65)
128 PF12292 DUF3624: Protein of u 54.0 11 0.00023 31.6 2.4 37 10-46 16-52 (77)
129 KOG3582 Mlx interactors and re 53.8 3.5 7.5E-05 46.6 -0.7 66 231-296 650-718 (856)
130 cd04912 ACT_AKiii-LysC-EC-like 51.3 65 0.0014 25.5 6.5 25 371-395 12-36 (75)
131 cd04890 ACT_AK-like_1 ACT doma 49.9 48 0.001 24.8 5.3 24 372-395 12-35 (62)
132 cd04936 ACT_AKii-LysC-BS-like_ 48.9 96 0.0021 22.5 6.7 51 372-432 12-62 (63)
133 cd04868 ACT_AK-like ACT domain 48.6 69 0.0015 22.4 5.7 26 373-398 13-38 (60)
134 cd04932 ACT_AKiii-LysC-EC_1 AC 47.4 1.5E+02 0.0032 23.9 8.6 37 371-411 12-48 (75)
135 cd04923 ACT_AK-LysC-DapG-like_ 45.2 1.2E+02 0.0025 22.0 6.9 50 372-431 12-61 (63)
136 cd04934 ACT_AK-Hom3_1 CT domai 44.4 1.3E+02 0.0029 24.1 7.3 53 372-429 13-65 (73)
137 COG0317 SpoT Guanosine polypho 44.1 67 0.0015 36.8 7.3 62 352-413 611-678 (701)
138 cd04935 ACT_AKiii-DAPDC_1 ACT 43.9 1E+02 0.0022 24.8 6.6 55 371-429 12-67 (75)
139 cd04933 ACT_AK1-AT_1 ACT domai 43.9 1.6E+02 0.0035 24.2 7.8 25 371-395 12-36 (78)
140 PRK10622 pheA bifunctional cho 43.8 1.3E+02 0.0027 32.0 9.0 63 365-430 299-362 (386)
141 PRK11898 prephenate dehydratas 43.7 95 0.0021 31.3 7.8 64 364-430 197-262 (283)
142 cd04917 ACT_AKiii-LysC-EC_2 AC 43.7 1.4E+02 0.003 22.5 7.1 50 372-431 13-62 (64)
143 PRK06291 aspartate kinase; Pro 42.5 1.1E+02 0.0024 32.8 8.5 68 356-431 391-461 (465)
144 cd04913 ACT_AKii-LysC-BS-like_ 42.4 1.3E+02 0.0028 22.4 6.7 56 370-431 9-65 (75)
145 PRK08639 threonine dehydratase 41.5 1.2E+02 0.0026 32.1 8.4 66 361-429 334-401 (420)
146 PLN02551 aspartokinase 41.4 1.3E+02 0.0028 33.3 8.8 67 357-431 439-507 (521)
147 COG2061 ACT-domain-containing 40.9 1.3E+02 0.0029 28.5 7.6 50 363-412 5-57 (170)
148 TIGR02079 THD1 threonine dehyd 39.9 1.4E+02 0.0029 31.7 8.5 66 361-429 323-390 (409)
149 COG3978 Acetolactate synthase 39.1 1.9E+02 0.004 24.7 7.4 66 364-432 4-69 (86)
150 PRK00227 glnD PII uridylyl-tra 39.0 46 0.001 38.0 5.1 59 364-431 632-690 (693)
151 cd04921 ACT_AKi-HSDH-ThrA-like 38.4 1.7E+02 0.0038 22.7 7.1 52 372-431 13-64 (80)
152 PRK09034 aspartate kinase; Rev 38.1 1.4E+02 0.003 32.1 8.3 68 356-431 378-448 (454)
153 TIGR00656 asp_kin_monofn aspar 37.7 1.7E+02 0.0037 30.4 8.8 67 357-431 254-323 (401)
154 PRK15385 magnesium transport p 37.3 2.1E+02 0.0045 28.5 8.8 66 362-428 141-210 (225)
155 TIGR01268 Phe4hydrox_tetr phen 35.6 1.4E+02 0.0031 32.4 7.8 51 364-414 17-68 (436)
156 COG0016 PheS Phenylalanyl-tRNA 34.9 16 0.00034 38.2 0.6 13 90-102 254-266 (335)
157 PRK07431 aspartate kinase; Pro 34.3 1.7E+02 0.0036 32.3 8.5 67 355-431 340-409 (587)
158 PRK08210 aspartate kinase I; R 33.6 1.8E+02 0.0039 30.4 8.2 66 356-431 332-400 (403)
159 PRK09436 thrA bifunctional asp 32.6 2.1E+02 0.0045 33.3 9.2 67 357-431 390-459 (819)
160 COG0077 PheA Prephenate dehydr 31.9 2.6E+02 0.0057 28.6 8.7 65 363-430 194-259 (279)
161 PRK06291 aspartate kinase; Pro 31.6 2.3E+02 0.0049 30.5 8.7 43 358-400 316-361 (465)
162 TIGR00656 asp_kin_monofn aspar 31.1 2.4E+02 0.0053 29.3 8.7 65 357-431 331-398 (401)
163 PF02344 Myc-LZ: Myc leucine z 30.1 53 0.0011 23.2 2.4 19 238-256 11-29 (32)
164 COG2716 GcvR Glycine cleavage 29.7 1.9E+02 0.0042 27.8 6.9 73 363-435 92-167 (176)
165 TIGR01270 Trp_5_monoox tryptop 29.6 2.1E+02 0.0045 31.4 8.0 51 364-414 32-84 (464)
166 cd04898 ACT_ACR-like_4 ACT dom 29.2 1.2E+02 0.0027 25.4 4.8 47 369-415 6-54 (77)
167 PF15013 CCSMST1: CCSMST1 fami 28.6 51 0.0011 27.6 2.5 34 13-50 31-66 (77)
168 PRK00488 pheS phenylalanyl-tRN 28.3 21 0.00047 37.3 0.3 12 90-101 247-258 (339)
169 TIGR01124 ilvA_2Cterm threonin 28.1 2.7E+02 0.0059 30.4 8.7 64 361-429 323-387 (499)
170 PRK06635 aspartate kinase; Rev 26.2 2.7E+02 0.0058 29.0 8.0 65 357-431 334-401 (404)
171 cd04907 ACT_ThrD-I_2 Second of 26.1 3.7E+02 0.008 22.0 7.5 59 364-429 2-63 (81)
172 COG0440 IlvH Acetolactate synt 25.3 2.1E+02 0.0045 27.2 6.2 68 365-434 6-73 (163)
173 PRK12483 threonine dehydratase 24.9 3.9E+02 0.0084 29.6 9.2 64 362-429 344-408 (521)
174 PF09383 NIL: NIL domain; Int 24.7 3.5E+02 0.0075 21.3 9.6 50 374-429 16-65 (76)
175 PRK07431 aspartate kinase; Pro 24.7 3.3E+02 0.0072 30.1 8.7 67 356-432 512-581 (587)
176 PRK08818 prephenate dehydrogen 24.5 3.2E+02 0.0069 28.9 8.1 49 365-414 297-346 (370)
177 PRK09224 threonine dehydratase 23.6 4E+02 0.0088 29.1 9.0 64 362-429 327-391 (504)
178 COG0527 LysC Aspartokinases [A 23.4 4.4E+02 0.0096 28.6 9.1 67 356-432 376-445 (447)
179 PLN02317 arogenate dehydratase 22.0 4.3E+02 0.0093 28.3 8.5 51 364-414 284-349 (382)
180 TIGR00719 sda_beta L-serine de 21.2 5.8E+02 0.013 24.5 8.6 53 355-407 140-194 (208)
181 PF14992 TMCO5: TMCO5 family 21.0 1.2E+02 0.0026 31.1 4.0 27 270-296 144-170 (280)
182 PRK00907 hypothetical protein; 20.4 3.2E+02 0.0069 23.4 5.9 64 363-428 17-83 (92)
183 PLN02551 aspartokinase 20.2 3.9E+02 0.0084 29.6 8.0 36 360-395 363-401 (521)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.33 E-value=1.9e-12 Score=98.26 Aligned_cols=52 Identities=38% Similarity=0.653 Sum_probs=48.5
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCC---cCCCCCcchhHHHHHHHHHHHH
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 283 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~---~~~K~dKaSIL~~AI~YIk~Lq 283 (437)
+|..|+.+||+||.+||+.|..|+.+||.. ...|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999995 4578999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.30 E-value=3.9e-12 Score=96.92 Aligned_cols=56 Identities=39% Similarity=0.641 Sum_probs=51.4
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCcchhHHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLL 286 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~-~~K~dKaSIL~~AI~YIk~Lq~~v 286 (437)
..+..|+.+||+||++||..|..|+++||... ..++||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999942 378999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.23 E-value=1.7e-11 Score=91.78 Aligned_cols=51 Identities=39% Similarity=0.594 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCcchhHHHHHHHHHHHHHHHH
Q 013752 237 IAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLLQ 287 (437)
Q Consensus 237 ~~~ER~RR~kmNe~f~~LRsLvP~~~-~~K~dKaSIL~~AI~YIk~Lq~~v~ 287 (437)
+..||+||++||+.|..|+++||... ..+.||++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999743 5789999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.73 E-value=3.4e-08 Score=102.75 Aligned_cols=64 Identities=31% Similarity=0.543 Sum_probs=53.9
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcC--CCCCcchhHHHHHHHHHHHHHHHHHH
Q 013752 226 KEEVESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYV--QRGDQASIIGGAIDFVKELEQLLQSL 289 (437)
Q Consensus 226 ~~e~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~--~K~dKaSIL~~AI~YIk~Lq~~v~~L 289 (437)
.++...+|.+|+.+||+||++||+++..|..|||.+.. .|..|..||..+.+||++||+..++.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 33445689999999999999999999999999999421 24569999999999999999887733
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.35 E-value=4.6e-06 Score=68.38 Aligned_cols=69 Identities=14% Similarity=0.399 Sum_probs=61.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCH---HHHHHHHHHHHHh
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSA---EEIAAAVHQIFSY 433 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~Sa---EEI~~AL~qil~~ 433 (437)
+|.|.|+.|||+|.+|..+|-.+|++|.+|.|+|.++++.-+|.++-.+|.++.+. +.|.++|..++.|
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999988788776443 5677888887765
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.35 E-value=5.5e-07 Score=85.00 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=57.5
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCc-----CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013752 229 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-----VQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 229 ~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~-----~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l 296 (437)
++.+|.+|.-+||+||+.||..+..|..|||.+. ..|..||-||..+|+||..|.+++..-+.+...+
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999832 1267799999999999999999887766665544
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.10 E-value=1e-05 Score=79.49 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=56.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHH-HccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTL-RSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~L-RsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l 296 (437)
++|.+..+.||+|=+|+|+.|.+| |.-.+++ .++.-|+.||..||+||..||.-++++.+....+
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 467788899999999999999999 6667775 5899999999999999999999999887765544
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.09 E-value=3.1e-05 Score=63.05 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCC
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKL 417 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l 417 (437)
..|+|.+++|||+|.+|.++|..+||+|..|.|+|.++++..+|.+.-.+|.++
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 368999999999999999999999999999999999999999999986666665
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=3.2e-05 Score=62.67 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEEcCCCCCC---CHHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKIEEDCKLG---SAEEIAAAVHQIFS 432 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt-~~~~Vl~tf~vKVee~~~l~---SaEEI~~AL~qil~ 432 (437)
+.++|.|+.|||+|.++..+|..+||+|+.|.|.+ .++.++.+|.+.-.++ ... ..++|.++|.+++.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~-~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARE-LLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCC-CCCCHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999985 8999999999963332 221 23446666665553
No 10
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=6.3e-05 Score=61.70 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=55.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEEcCCCCCCC---HHHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT--SSETTVHYSFNLKIEEDCKLGS---AEEIAAAVHQIFS 432 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS--t~~~~Vl~tf~vKVee~~~l~S---aEEI~~AL~qil~ 432 (437)
.|.|.|++|||+|.+|.++|..+||+|..|.|+ |.++++.-+|.+ -.++.++.. .+.|.++|.+++.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999 999999999999 344444322 4567777777654
No 11
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.91 E-value=0.00017 Score=57.46 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=45.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEEcCCCC
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKIEEDCK 416 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~~~Vl~tf~vKVee~~~ 416 (437)
.|.|.|+.|+|+|.++..+|..+||+|+.|.|.+. ++.++-+|.+.-.++..
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~ 55 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEP 55 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCC
Confidence 57899999999999999999999999999999766 78999999997544443
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.88 E-value=1e-05 Score=79.93 Aligned_cols=60 Identities=22% Similarity=0.434 Sum_probs=51.2
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCc------CCCCCcchhHHHHHHHHHHHHHHHHH
Q 013752 229 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY------VQRGDQASIIGGAIDFVKELEQLLQS 288 (437)
Q Consensus 229 ~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~------~~K~dKaSIL~~AI~YIk~Lq~~v~~ 288 (437)
.+.++..|-..||+||.+||+-|..|+.|||... ..|++||.||.-|++|++.|+.....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3457788889999999999999999999999822 25788999999999999999876543
No 13
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.88 E-value=3.9e-05 Score=75.08 Aligned_cols=63 Identities=24% Similarity=0.387 Sum_probs=51.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGD-QASIIGGAIDFVKELEQLLQSLEAQK 293 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~d-KaSIL~~AI~YIk~Lq~~v~~Le~~k 293 (437)
+.|..|+.-||+||..|++.|..|+.+||.....+.. .++||..|..||+.|+.+....+..+
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~ 121 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDI 121 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 3678999999999999999999999999994323333 58899999999999998776655443
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=0.00026 Score=56.89 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=53.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcC-CCCCCC---HHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEE-DCKLGS---AEEIAAAVHQIF 431 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee-~~~l~S---aEEI~~AL~qil 431 (437)
.|+|.++.|||+|.+|..+|..+|++|+.|.+.+.++.++.+|.+.-.+ +..... .+.|.++|.+++
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999886443 332222 345666665554
No 15
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.80 E-value=1.9e-05 Score=88.33 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=48.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHccCCCCcC---CCCCcchhHHHHHHHHHHHHHH
Q 013752 233 RMTHIAVERNRRRQMNDHLNTLRSLMPPAYV---QRGDQASIIGGAIDFVKELEQL 285 (437)
Q Consensus 233 r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~---~K~dKaSIL~~AI~YIk~Lq~~ 285 (437)
|.+|+.+||+||+|||..+.+|.+|||.+ . -|+||..||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~-~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTN-ASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcc-hhcccCchHHHHHHHHHHHHHHHhhh
Confidence 57888999999999999999999999994 4 6999999999999999999885
No 16
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00036 Score=56.26 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=53.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS-t~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.|-|.|+.+||++.+|..+|..+||+|+.|.|. +.++.++-+|.+.-.++. ..+++.++|++.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 577899999999999999999999999999994 678999999999755442 3667888887765
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.0011 Score=51.14 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCC
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCK 416 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~ 416 (437)
.|.|.++.++|+|.+|+.+|.+++++|.++++.+.++.++.+|.+...++..
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~ 53 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP 53 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc
Confidence 5789999999999999999999999999999988888888999998766544
No 18
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.50 E-value=9.9e-05 Score=71.42 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=54.4
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELEQLLQSLEAQK 293 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~--~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~k 293 (437)
.++..++..||+|=+.+|..|..||.++|... .+|..|..+|..||.||+.|++-++.-+...
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 36677888899999999999999999999954 4688999999999999999999886655443
No 19
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.50 E-value=6.3e-05 Score=84.84 Aligned_cols=64 Identities=23% Similarity=0.475 Sum_probs=57.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013752 230 ESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKR 294 (437)
Q Consensus 230 e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke 294 (437)
+.+|.+||..||+-|-.||+++..|+.+||.. ..|..|..+|..||+||++|+...+.++.+..
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-HhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 34789999999999999999999999999985 46889999999999999999998887765543
No 20
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0023 Score=51.05 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=51.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|.|.++.++|+|.+|..+|.++|++|+++.+.+.++.++.+|.+.-.++... .. +..+.|.+.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CH-HHHHHHHHHhc
Confidence 57788999999999999999999999999999888888888888864444433 33 34445555544
No 21
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.30 E-value=0.00018 Score=72.57 Aligned_cols=58 Identities=26% Similarity=0.403 Sum_probs=49.9
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSL 289 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~L 289 (437)
+|...|..||+|-.-||.-|..||+|+|.--.-|..||.||..+.+||.+|+.+.-+|
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 4555677899999999999999999999955568899999999999999998766544
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.19 E-value=0.0033 Score=50.60 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
++.|.+.+++|||++..+..+|-++|.+|+.++.++.++.+...+.+.+.+. +.++|.++|.++....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999887788877732 4788888888876654
No 23
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.17 E-value=0.0023 Score=48.37 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
..|.|.|+.|||+|.++.+.|-++|++|.++.+.+..+...+.+.+...+. ...+.+.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---EDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---HGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---CCHHHHHHHHHccc
Confidence 368899999999999999999999999999999877662222223322222 14677888887764
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.90 E-value=0.014 Score=44.56 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=43.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCC
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDC 415 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~ 415 (437)
.|.|.|+.++|+|.+|+.+|.++++.|.++.+.+.++.....|.+.-.++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~ 52 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR 52 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCC
Confidence 578899999999999999999999999999998876676677777665543
No 25
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.85 E-value=0.013 Score=47.27 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSY 433 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~ 433 (437)
+.|.+.|+.+||+..+|-+.|-++|..|+.++....++.++..+.+.++. .+.+++.+++..+...
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998888887767766552 2678888888886655
No 26
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.84 E-value=0.0013 Score=60.88 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=52.7
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHH
Q 013752 226 KEEVESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLL 286 (437)
Q Consensus 226 ~~e~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v 286 (437)
-+|-.++|..|+..||+|-..+|+.|.+||.++|...+.|..|.--|.-|..||..|=+-+
T Consensus 72 ~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 72 LDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 4456689999999999999999999999999999855567778888999999999886543
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.81 E-value=0.01 Score=68.12 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=64.9
Q ss_pred CcEEEEEE--cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCC---HHHHHHHH
Q 013752 353 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGS---AEEIAAAV 427 (437)
Q Consensus 353 peVEVsvi--g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~S---aEEI~~AL 427 (437)
+.|.+.-. ++...|.|.++.|||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.++..+.. .++|.++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 34444433 34678999999999999999999999999999999999999999999998666654433 35678888
Q ss_pred HHHHHh
Q 013752 428 HQIFSY 433 (437)
Q Consensus 428 ~qil~~ 433 (437)
.+++..
T Consensus 882 ~~~L~~ 887 (895)
T PRK00275 882 CEQLDA 887 (895)
T ss_pred HHHHhc
Confidence 887754
No 28
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.71 E-value=0.018 Score=45.58 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYIN 435 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i~ 435 (437)
.|.|.|+.|+|++.+|.+.|-++|+.|++.+..+..+...+.+.+++.-.....+.+++.++|..+....+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 71 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFD 71 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 37899999999999999999999999999998763322233444444432211368899999988766543
No 29
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.70 E-value=0.0033 Score=52.96 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHccCCCCcC-CCCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013752 244 RRQMNDHLNTLRSLMPPAYV-QRGDQ---ASIIGGAIDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 244 R~kmNe~f~~LRsLvP~~~~-~K~dK---aSIL~~AI~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
-++||+....|+.|+|.... ...+| +-+|.++.+||+.|+.+|..|.+....+.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999998432 22344 44899999999999999999999887654
No 30
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.66 E-value=0.0085 Score=48.04 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=43.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCC
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEED 414 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~ 414 (437)
.+.|+|.+..|+|+|.+|..++-+.++.|.++++... ++.....|.+.+.+-
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~ 59 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL 59 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH
Confidence 4789999999999999999999999999999999874 677778888888753
No 31
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.63 E-value=0.0098 Score=68.21 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=60.3
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCC--CHHHHHHHHHHHHHh
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLG--SAEEIAAAVHQIFSY 433 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~--SaEEI~~AL~qil~~ 433 (437)
+....|+|.+.+|||+|.+|.++|.++||+|..|.|+|.++++.-+|.|.-.+|.++. ..++|+++|..++..
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999999999999999999999766555442 134566676666643
No 32
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.63 E-value=0.015 Score=66.97 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=65.0
Q ss_pred CcEEEEEE--cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCC---HHHHHHHH
Q 013752 353 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGS---AEEIAAAV 427 (437)
Q Consensus 353 peVEVsvi--g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~S---aEEI~~AL 427 (437)
+.|.+.-. ++...|.|.++.+||+|.+|..+|.++|++|..|.|.|.++++.-+|.+.-.++.+... .++|.++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 34444432 34688999999999999999999999999999999999999999999998666654433 36688888
Q ss_pred HHHHHh
Q 013752 428 HQIFSY 433 (437)
Q Consensus 428 ~qil~~ 433 (437)
.+++..
T Consensus 911 ~~~L~~ 916 (931)
T PRK05092 911 LAALAE 916 (931)
T ss_pred HHHhcC
Confidence 887743
No 33
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.59 E-value=0.028 Score=44.72 Aligned_cols=66 Identities=9% Similarity=0.178 Sum_probs=52.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE------TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~------~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
|.|.|+.++|++.+|-+.|.++|++|.+++..+.+ +.+...+.+.+.++ .+.+++.++|..+-...
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~---~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG---TDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC---CCHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999998776 44444455555532 36888999888876554
No 34
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.46 E-value=0.022 Score=65.36 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=62.5
Q ss_pred CcEEEEEE--cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCC--HHHHHHHHH
Q 013752 353 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGS--AEEIAAAVH 428 (437)
Q Consensus 353 peVEVsvi--g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~S--aEEI~~AL~ 428 (437)
+.|.+.-. ++...|.|.+..+||+|.+|..+|..+||+|..|.|+|.+++++-+|.|.-.++..... .++|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 34444432 34688999999999999999999999999999999999999999999997555543311 256667776
Q ss_pred HHHH
Q 013752 429 QIFS 432 (437)
Q Consensus 429 qil~ 432 (437)
.++.
T Consensus 864 ~~l~ 867 (869)
T PRK04374 864 ACLD 867 (869)
T ss_pred HHhc
Confidence 6654
No 35
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.45 E-value=0.013 Score=66.99 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=58.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCC--HHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGS--AEEIAAAVHQIF 431 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~S--aEEI~~AL~qil 431 (437)
....|.|.+.+|||+|.+|.++|.++|++|..|.|+|.++++.-+|-+.-.+|.++.. .++|+++|..++
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999997666655422 245666666554
No 36
>PRK00194 hypothetical protein; Validated
Probab=96.43 E-value=0.024 Score=46.55 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
.+.|.|.|+++||++.+|.+.|-++|++|++.+..+.++.....+.+.+.. .. ...+++.+.|.++-..+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SK-KDFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CC-CCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999877666555555555543 11 25788888888766554
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.42 E-value=0.02 Score=47.06 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=55.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
+.|.+.|+++||++.+|.+.|-++|++|++++..+.++.+...+.+.+.. .. .+.+++.++|..+....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~-~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SN-LDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CC-CCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999877777665556666553 11 35788988888876554
No 38
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.038 Score=44.13 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=55.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYIN 435 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i~ 435 (437)
|.|..+.|||++.++.++|-++|++|.+++.++.++.+...+.+.+..+ .+.+++.++|..+....+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~---~~~~~l~~~l~~l~~~l~ 68 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS---ADSEALLKDLLFKAHELG 68 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC---CCHHHHHHHHHHHHHHcC
Confidence 6888999999999999999999999999998888877666666666554 257889999988876543
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.19 E-value=0.024 Score=64.94 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
+...|.|.++.|||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.......-.+.|+++|.+++
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999993211111112456667776655
No 40
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.13 E-value=0.034 Score=63.43 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=60.2
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEEcCCCCCCC---HHHHHHHHHHHHHh
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKIEEDCKLGS---AEEIAAAVHQIFSY 433 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS-t~~~~Vl~tf~vKVee~~~l~S---aEEI~~AL~qil~~ 433 (437)
++...|.|.++.++|+|.+|..+|..+||+|+.|.|. +.++.++-+|.|+-.++..... .+.|.++|.+++..
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999999999997 7799999999998776654323 34577777777743
No 41
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.041 Score=42.97 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=46.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|+|.+..++|+|.+|+.+|.+.|..|.+.++... ++.....|.+++.+... .+.|.++|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~---l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEH---AETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHH---HHHHHHHHhc
Confidence 7889999999999999999999999999998765 45665667777766432 3445555544
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.02 E-value=0.038 Score=62.65 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=60.3
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.+.+.|.|.|+.|||++.+|..+|..+|++|+.|+|.+.++.++.+|.|.-.++... ..++|.++|.+++.
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-DAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-hHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999999888999999999975444322 35778888888765
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.01 E-value=0.035 Score=63.29 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=58.0
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCC--HHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGS--AEEIAAAVHQIF 431 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~S--aEEI~~AL~qil 431 (437)
+...|.|.|..|||+|.+|.++|..+|++|.++.|+|.++++..+|.+....+.++.+ .+.|+++|...+
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999998776655422 344555555543
No 44
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.93 E-value=0.036 Score=62.79 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+...|.|.++.+||+|.+|..+|..+|++|.+|.|+|.++.++-+|.|.-.++..+ + ++ .+.|++.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~-~-~~-~~~l~~~ 771 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL-A-DA-RAAVEQA 771 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcC-c-hH-HHHHHHH
Confidence 45899999999999999999999999999999999999999999999986666654 2 33 4555544
No 45
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.77 E-value=0.065 Score=40.46 Aligned_cols=61 Identities=25% Similarity=0.419 Sum_probs=43.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-----~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
+.|.++.+||.|.+|+++|.+.|++|...+.... .+.....|++.+.+. ...+++.++|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGA---EHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 4678899999999999999999999998887643 344555566666431 124566666654
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.56 E-value=0.083 Score=60.58 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCcEEEEEE--cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEEcCCCCCCCH---HHHHH
Q 013752 352 GAEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKIEEDCKLGSA---EEIAA 425 (437)
Q Consensus 352 ~peVEVsvi--g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt-~~~~Vl~tf~vKVee~~~l~Sa---EEI~~ 425 (437)
.+.|.+.-. .+...|.|.++.++|+|.+|..+|..+||+|+.|.|.+ .++.++-+|.|.-.++... +. +.|.+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-~~~~~~~l~~ 742 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-EFDRRRQLEQ 742 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-CHHHHHHHHH
Confidence 344554432 45679999999999999999999999999999999965 8999999999976555543 33 34667
Q ss_pred HHHHHHH
Q 013752 426 AVHQIFS 432 (437)
Q Consensus 426 AL~qil~ 432 (437)
+|.+++.
T Consensus 743 ~L~~aL~ 749 (854)
T PRK01759 743 ALTKALN 749 (854)
T ss_pred HHHHHHc
Confidence 7776664
No 47
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.54 E-value=0.072 Score=61.35 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=57.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEEcCCCCCC----CHHHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLKIEEDCKLG----SAEEIAAAVHQIFS 432 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnV-St~~~~Vl~tf~vKVee~~~l~----SaEEI~~AL~qil~ 432 (437)
+...|.|.|+.+||++.+|+.+|..+||+|+.|.| |+.++.++-+|.|.-.++.... -.++|.++|.+++.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999998 6778899999999765554321 13457777777663
No 48
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.53 E-value=0.088 Score=60.58 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=61.7
Q ss_pred CCcEEEEE--EcCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEEcCCCCCCCH---HHHHH
Q 013752 352 GAEIEVIV--IHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKIEEDCKLGSA---EEIAA 425 (437)
Q Consensus 352 ~peVEVsv--ig~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt-~~~~Vl~tf~vKVee~~~l~Sa---EEI~~ 425 (437)
.+-|.+.- .++...|.|.|+.++|+|.+|..+|..+||+|+.|.|.| .++.++-+|.|.-.++... +. ++|.+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-~~~~~~~I~~ 766 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQDRHQVIRK 766 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-CHHHHHHHHH
Confidence 34455443 245789999999999999999999999999999999865 4669999999976665543 33 34777
Q ss_pred HHHHHHH
Q 013752 426 AVHQIFS 432 (437)
Q Consensus 426 AL~qil~ 432 (437)
+|.+++.
T Consensus 767 ~L~~aL~ 773 (884)
T PRK05007 767 ALEQALT 773 (884)
T ss_pred HHHHHHc
Confidence 7777764
No 49
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.078 Score=41.37 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=47.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
.+.|.+..++|+|.+|++.|.+.+++|...+.+.. ++.....|++.+.+.. ...++|.++|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~--~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN--GDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH--HHHHHHHHHHhcC
Confidence 57889999999999999999999999999987543 3555566777665432 1245666666553
No 50
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.22 E-value=0.085 Score=60.67 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=57.5
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS-t~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.+...|.|.|+.++|++.+|..+|..+||+|+.|.|. +.+|.++-+|.|.-.++......+.|.++|.+++.
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLA 760 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHc
Confidence 3568899999999999999999999999999999995 57899999999965444211234557777777664
No 51
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.19 E-value=0.11 Score=59.70 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=57.3
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEEcCCCCC--CCHHHHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLKIEEDCKL--GSAEEIAAAVHQIFS 432 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnV-St~~~~Vl~tf~vKVee~~~l--~SaEEI~~AL~qil~ 432 (437)
.+...|.|.|+.+||++.+|..+|..+||+|+.|.| |+.+|.++-+|.|.-.++.-. .-.++|.++|.+++.
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLA 750 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHc
Confidence 356889999999999999999999999999999999 678999999999975443311 124557777777663
No 52
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.15 E-value=0.065 Score=57.66 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=47.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCC----CcchhHHHHHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRG----DQASIIGGAIDFVKELEQLLQSL 289 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~----dKaSIL~~AI~YIk~Lq~~v~~L 289 (437)
.+|+..++.||.|-+.||+.|.+|-.+.-- --|. .|.-||..|+.-|-.|++||.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCql--HlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQL--HLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHH--hhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 479999999999999999999999665443 1223 47789999999999999999764
No 53
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.14 E-value=0.14 Score=59.27 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=61.2
Q ss_pred CcEEEEEE--cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEEcCCCCCC---CHHHHHHH
Q 013752 353 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKIEEDCKLG---SAEEIAAA 426 (437)
Q Consensus 353 peVEVsvi--g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt-~~~~Vl~tf~vKVee~~~l~---SaEEI~~A 426 (437)
+.|.+... ++...|.|.|+.++|+|.+|..+|..+|++|+.|.|.+ .++.++.+|.|.-.++.... ..+.|.++
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 44545443 35789999999999999999999999999999999865 68888888988765543221 25567777
Q ss_pred HHHHH
Q 013752 427 VHQIF 431 (437)
Q Consensus 427 L~qil 431 (437)
|.+++
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 77776
No 54
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.088 Score=59.75 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=60.9
Q ss_pred CcEEEEEE--cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 353 AEIEVIVI--HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 353 peVEVsvi--g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|.|.+.-. .+..+|+|.+..|||+|..|-.+|..++|+|..|+|+|+|.++.-+|.+....+-++ ..++.+++.+
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l--~~~~~q~l~~ 855 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL--NAELRQSLLQ 855 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC--CHHHHHHHHH
Confidence 55555443 345789999999999999999999999999999999999999999999988777654 3455555444
No 55
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.54 E-value=0.22 Score=33.97 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=31.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE 400 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~ 400 (437)
|.|.|+.++|.+.+++..|...++.|...+....+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46888999999999999999999999999986654
No 56
>PRK04435 hypothetical protein; Provisional
Probab=94.44 E-value=0.2 Score=45.76 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=52.6
Q ss_pred EEcCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 359 VIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 359 vig~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt-~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
..|..+.|.+.+..++|+|.+|++.|.+.|++|++.+.+. .++....+|++.+.+.. ...++|.++|.+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~--~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME--GDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH--HHHHHHHHHHHc
Confidence 3467899999999999999999999999999999998754 35666667777775431 135566666554
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.40 E-value=0.2 Score=36.10 Aligned_cols=48 Identities=15% Similarity=0.413 Sum_probs=38.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcC
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEE 413 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee 413 (437)
|+|.+..++|.+.++++.|.++++++.+..+...+ +.....|++++.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 46788999999999999999999999999886654 4444556666544
No 58
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.73 E-value=0.25 Score=37.77 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-C-CeEEEEEEEEE
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-E-TTVHYSFNLKI 411 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~-~~Vl~tf~vKV 411 (437)
++|+|.+..++|+|.+++..|.+.++.+...+.... + +.....+.+.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 478999999999999999999999999999887554 2 44444444443
No 59
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.47 E-value=0.26 Score=39.14 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=37.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcC
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEE 413 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee 413 (437)
.|+|.|..|+|+|.+|+.++.+.+..+...++.+. +. ..|.+.+.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecC
Confidence 47899999999999999999999999999998765 44 235555553
No 60
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=93.46 E-value=0.48 Score=35.53 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=45.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
.|.|.+..++|+|.+|+..|.+.++.+...+.... ++.....|.+.+.. . ..+++.+.|+++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~l~~~ 65 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-D---VIEQIVKQLNKL 65 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-H---HHHHHHHHHhCC
Confidence 46788899999999999999999999999987654 45555666666432 1 345555555543
No 61
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.40 E-value=0.64 Score=46.98 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
.+.|.|.|++|||+..+|-+.|-++|++|.+++..+....-++.+.+.+.-... .+.+++.++|..+-..+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-LDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-CCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999875433334455666643222 36889999988876654
No 62
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.23 E-value=0.7 Score=46.60 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEEcC-CCCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLKIEE-DCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt--~~~~Vl~tf~vKVee-~~~l~SaEEI~~AL~qil~~i 434 (437)
..+.|.|.|++|||+...|.+.|-++|++|++++.++ .++. +.+.+.+.- ... .+.+++.++|..+-..+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~--F~m~i~v~~~~~~-~~~~~L~~~L~~l~~~l 77 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR--FFMRVEFEGDGLI-FNLETLRADFAALAEEF 77 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe--EEEEEEEEeCCCC-CCHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999999999999988 6663 344444443 222 35888999888876554
No 63
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.16 E-value=0.079 Score=52.72 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=50.3
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHccCCC-CcCCCCCcchhHHHHHHHHHHHHHHH
Q 013752 229 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPP-AYVQRGDQASIIGGAIDFVKELEQLL 286 (437)
Q Consensus 229 ~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~-~~~~K~dKaSIL~~AI~YIk~Lq~~v 286 (437)
...+|..-|..||+|--.+|+.|..||.++|. ....|+.|+..|.-|-+||..|++-.
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 34578889999999999999999999999994 33568889999999999999988654
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.14 E-value=0.65 Score=36.69 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=45.1
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 367 KIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 367 kI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
-+..+++||.|.++++.+.++|+.+++.......+ .--|.|.+.++..-.....+++...|.+.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 34557899999999999999999999997655543 45577888877531122455555666554
No 65
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.79 E-value=0.79 Score=34.52 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=42.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.|.|.++.++|.|.+++..|.+.++.|...+....+ +... +.+.+++. ...+++.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~--~~i~~~~~---~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKAR--IYMELEGV---GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEE--EEEEEecc---ccHHHHHHHHhC
Confidence 478899999999999999999999999988876543 3322 33555442 135556655554
No 66
>PRK08577 hypothetical protein; Provisional
Probab=92.63 E-value=1 Score=40.11 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=49.6
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+.+.|.|.+.+++|+|.+|++.|.++++++.+.+..+.. +.....+.+.+.+.. ...+++.+.|.++
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~--~~l~~l~~~L~~l 123 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD--IDLEELEEELKKL 123 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch--hhHHHHHHHHHcC
Confidence 368899999999999999999999999999999876653 333345666666531 1356666666543
No 67
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.28 E-value=0.97 Score=45.58 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=50.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH-HHHh
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ-IFSY 433 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q-il~~ 433 (437)
.|.|.|++++|+..+|-..|-++|++|++++-+..+..-.+.+.+.++-.....+.+++.+++.. +-..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~ 71 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEK 71 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998875422233344444432212368899998888 5443
No 68
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.10 E-value=0.97 Score=35.39 Aligned_cols=62 Identities=8% Similarity=0.165 Sum_probs=43.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS---ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~---~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+.|.-+.+||.|.++++.|.++|..|++...... .+.....+++.++... ..++|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~---~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS---KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch---HHHHHHHHHhCc
Confidence 4567789999999999999999999998876543 2233334455443221 367787777655
No 69
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.85 E-value=0.95 Score=33.92 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=39.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|.|.-+.+||.|.++++.|.+.|+.|.+....... +.... .+.++. .+++.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v--~~~ve~------~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALL--IFRTED------IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEE--EEEeCC------HHHHHHHHHH
Confidence 56777899999999999999999999877654433 33333 444443 5556666554
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.76 E-value=1.1 Score=33.49 Aligned_cols=58 Identities=14% Similarity=0.336 Sum_probs=41.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|.+.+..++|.|.++...|.++++.|...+.... ++..... +.+++. ..+++.++|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHHc
Confidence 6788999999999999999999999998887652 2333323 444443 24456666554
No 71
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.67 E-value=1 Score=36.42 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=49.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.|.|.||.+.|+-.+|.+.+-+.||.|...++++.+.=-+..|-+......-...=+-+++.|.+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 58899999999999999999999999999999998876665666654433222334556666654
No 72
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.65 E-value=1.1 Score=33.27 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=43.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+.|....++|+|.+|+..|.+.++.|.+..+.... +.....|.+ ++. ..+++.+.|+.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~~----~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DSP----VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CCC----CCHHHHHHHHcC
Confidence 56788999999999999999999999999986643 455455554 332 245666666554
No 73
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.62 E-value=0.1 Score=56.77 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHccCCC--CcCCCCCcchhHHHHHHHHH
Q 013752 240 ERNRRRQMNDHLNTLRSLMPP--AYVQRGDQASIIGGAIDFVK 280 (437)
Q Consensus 240 ER~RR~kmNe~f~~LRsLvP~--~~~~K~dKaSIL~~AI~YIk 280 (437)
-++-|+++|..+..|.+|+|. +.++|.||.|||.-++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456689999999999999998 34679999999999999985
No 74
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=91.60 E-value=2 Score=34.45 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=44.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.+.+..+.++|.|.++++.+.++|+.+++...... ++...|.|.+.++.. ...+++.++|..
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~ 65 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEE 65 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHH
Confidence 45566678999999999999999999999976554 345558888887753 123444444443
No 75
>PRK07334 threonine dehydratase; Provisional
Probab=91.27 E-value=0.96 Score=47.34 Aligned_cols=64 Identities=13% Similarity=0.280 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-----~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.+.|+|.+..|+|+|.+|+..|.+.+++|.+.++.+. ++.....|++++.+-.. .+.|.+.|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~---L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAH---LQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHH---HHHHHHHHHH
Confidence 4899999999999999999999999999999998754 45665667777765322 3445555554
No 76
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.20 E-value=1.3 Score=45.01 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=51.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEEcC--CCCCCCHHHHHHHHHHHHHhhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT--SSETTVHYSFNLKIEE--DCKLGSAEEIAAAVHQIFSYIN 435 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS--t~~~~Vl~tf~vKVee--~~~l~SaEEI~~AL~qil~~i~ 435 (437)
.+.|.|.|++|+|+..+|-+.|-++|++|++++-. +..+..+ +.+.+.. ... .+.+++.+++..+-...+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff--m~i~~~~~~~~~-~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF--MRVSFHAQSAEA-ASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE--EEEEEEcCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999975 3333333 3333332 222 368899999888766543
No 77
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.32 E-value=1.9 Score=36.44 Aligned_cols=67 Identities=16% Similarity=0.333 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
..|-+..++++|.|.+++..+...|+.+.+...-... ..--|.|-+.++.. . .+.+.++|..+-..|
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~---~~~~~~~l~~L~~~~ 82 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S---APALDPIIKSLRNDI 82 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C---CHHHHHHHHHHHHHh
Confidence 5566666889999999999999999999999876543 33448888888753 2 245556655554443
No 78
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.30 E-value=2.6 Score=32.56 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=36.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEE
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKI 411 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKV 411 (437)
.|.|..+++||.|.+|++.|.+.|+.|...-+...++. ..+.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 46678899999999999999999999998887655553 4556655
No 79
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.01 E-value=2.3 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 399 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~ 399 (437)
+.+.|.++.+||.|.+++..|.++|++|........
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 357888999999999999999999999998876543
No 80
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.01 E-value=3.4 Score=31.73 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=42.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
.|.+..+.+||.|.++++.|.+.|+.|.+...... ++.....|.+... ..+++.++|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~------~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM------NPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC------CHHHHHHHHHHC
Confidence 57788899999999999999999999987765332 3444445555431 245677776653
No 81
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.99 E-value=2.7 Score=33.65 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=43.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
|-+..+++||.|.++++.+...|+.+.+...-...+ .--|.|-+.++.. .+++.++|.++
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-----~~~~~~~l~~L 63 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-----RGDLDQLISSL 63 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-----hHHHHHHHHHH
Confidence 334457799999999999999999999998765443 3448888888752 23455555544
No 82
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=88.59 E-value=2.1 Score=31.79 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=35.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEE
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNL 409 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~v 409 (437)
|.|..+.+||.|.++...|-+.|+.|....+...+ +..+..|.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 35678999999999999999999999888876544 555555554
No 83
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=2.7 Score=48.32 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=51.8
Q ss_pred EEEEEcCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEEcCCCC
Q 013752 356 EVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI-TSSETTVHYSFNLKIEEDCK 416 (437)
Q Consensus 356 EVsvig~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnV-St~~~~Vl~tf~vKVee~~~ 416 (437)
.++...+...|.|.|+.+|+++..++.++...|++|+.|.| ++.+|.++-+|-|.-.+|..
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~ 738 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFP 738 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCc
Confidence 34444577899999999999999999999999999999998 67889999999887555543
No 84
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=88.01 E-value=2.3 Score=40.29 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
..|.|...++||+|.+|...|-..|++|.+.++......-...+++-+..++. ..+.|.+.|++++.-+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~--~ieqL~kQL~KLidVl 71 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDR--TIEQLTKQLYKLVNIL 71 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHH--HHHHHHHHHHHHhHhh
Confidence 35788899999999999999999999999999966433333345555555443 2788999999887654
No 85
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.58 E-value=3.2 Score=32.38 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=41.4
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 367 KIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 367 kI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.|.-+.+||.|.++++.|-+ |.+|+..+....+ +.....+.+++.+.+ ..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE---DLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 56778999999999999999 9999988876432 222233455555432 36777777765
No 86
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=87.00 E-value=1.5 Score=34.43 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
++||.|.+|+..+..-|..|-+.++...++--++-+++.+.+... ..+.|.+.|.+++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~--~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDR--EIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CC--HHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCch--hHHHHHHHHhccCC
Confidence 479999999999999999999999987444333445555554322 47778877776654
No 87
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=86.88 E-value=2.6 Score=39.43 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=47.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|.|.-+++||.|.+|...|...|+.|.+..+...+ +....+|++. ... ...+.|...|++++.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~~~--~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--GDE--QVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--CCH--HHHHHHHHHHhcccc
Confidence 577888999999999999999999999999987554 3344455543 321 146777777777654
No 88
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=86.83 E-value=2.5 Score=39.40 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=48.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|.|.-+++||.|.+|...|...|+.|.+..+...+ +....+|++.. .. ...+.|.+.|++++.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~--~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DD--KVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CH--HHHHHHHHHHhcCcc
Confidence 577888999999999999999999999999987654 34444555543 21 247777777777654
No 89
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=86.50 E-value=2.4 Score=35.06 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..|.+...++||+|.++...+...|..|-+.++...++.-++-+++.+.+... ..+.|.+.|++++.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~--~i~qi~kQL~KLid 69 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTEN--EATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHH--HHHHHHHHHhCCcC
Confidence 35788889999999999999999999999999875544333334444332211 45666666666543
No 90
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=86.15 E-value=3.8 Score=33.84 Aligned_cols=67 Identities=12% Similarity=0.269 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSY 433 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~ 433 (437)
..|.|...++||.|.+++..+..-|..|-+.++...++.-+..+++-+.++ ...+.|.+.|++++.-
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~---~~i~ql~kQL~KL~dV 70 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASE---RPIDLLSSQLNKLVDV 70 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCC---chHHHHHHHHhcCcCe
Confidence 357888899999999999999999999999998764333333444444432 2578888888876643
No 91
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=84.94 E-value=2.8 Score=35.48 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=48.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|.+...++||+|.+|...+-..|..|-+.++...++--+.-+++-+..+.. ...+.|.+.|++.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~-~~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD-TSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH-HHHHHHHHHHhCCcc
Confidence 5788889999999999999999999999999876554444444444432211 246777777777654
No 92
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=84.69 E-value=4.7 Score=46.08 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=56.0
Q ss_pred CcEEEEEEcC-----eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHH
Q 013752 353 AEIEVIVIHN-----HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAA 425 (437)
Q Consensus 353 peVEVsvig~-----~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~ 425 (437)
.-|+|+..+. .+.|.|.+..|+|+|.+|..+|-+.++.|.++++.+. ++.....|+++|.+-.. .+.|.+
T Consensus 651 R~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~---L~~l~~ 727 (743)
T PRK10872 651 RIVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQV---LGRVLG 727 (743)
T ss_pred eEEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHH---HHHHHH
Confidence 3577777532 3689999999999999999999999999999998765 45555678888876432 344555
Q ss_pred HHHHH
Q 013752 426 AVHQI 430 (437)
Q Consensus 426 AL~qi 430 (437)
+|+++
T Consensus 728 ~L~~i 732 (743)
T PRK10872 728 KLNQV 732 (743)
T ss_pred HHhcC
Confidence 55543
No 93
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=84.31 E-value=1.1 Score=50.44 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHccCCC--CcCCCCCcchhHHHHHHHHH
Q 013752 238 AVERNRRRQMNDHLNTLRSLMPP--AYVQRGDQASIIGGAIDFVK 280 (437)
Q Consensus 238 ~~ER~RR~kmNe~f~~LRsLvP~--~~~~K~dKaSIL~~AI~YIk 280 (437)
-+-|-||.|=|+-|+.|..+||- +.....|||||+.-||.|++
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 57899999999999999999985 22457899999999999985
No 94
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.92 E-value=9.1 Score=31.09 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=42.2
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 368 IHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 368 I~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+..+.++|.|.+++..++..|+.+.+...-.. +..--|.|-+.++.. .+.+.++|.++
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~~l 63 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQLL 63 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHHHH
Confidence 34477899999999999999999999987554 333458888888743 23555555443
No 95
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=83.91 E-value=1 Score=34.31 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
|-+.+..++|+|.+++..|.+.++.+...+....++.....|.+.+. ..+++.+.|+++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~~ 60 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRAI 60 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHcC
Confidence 34578899999999999999999999777665444555444444333 244555555543
No 96
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=83.20 E-value=6.4 Score=40.03 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=53.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..+.+.|.|+.++|+...|-.-|-+.|..|++++-.+...+-.+-+.+....+....+.+.+.+++..+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999997644323333345555544333477888888877554
No 97
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=83.15 E-value=8.3 Score=36.92 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CeEEEE--EEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE----TTVHYS--FNLKIEEDCKLGSAEEIAAAVHQIFSYIN 435 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~----~~Vl~t--f~vKVee~~~l~SaEEI~~AL~qil~~i~ 435 (437)
+.|.|.-..|||++.++-+.|-++|++|.+++..+.+ +.-+|. +.+.+..++ ..+++.++|..+...++
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~---~~~~L~~~l~~l~~eL~ 170 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ---DAANIEQAFKALCTELN 170 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC---CHHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999999999876543 333444 444445554 37888888888766543
No 98
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=83.02 E-value=3.7 Score=39.25 Aligned_cols=66 Identities=8% Similarity=0.018 Sum_probs=51.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.++.|.+..+.|||+...|-++|-++|..++.++.+..++.+-..+.+ .... ...+++..+|..+-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv--s~~~--~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL--SGSW--NAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE--eCCh--hHHHHHHHHHHhhh
Confidence 478899999999999999999999999999999999988855433444 3221 25677777776654
No 99
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=82.44 E-value=6.3 Score=44.75 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=54.6
Q ss_pred CcEEEEEEcC-----eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHH
Q 013752 353 AEIEVIVIHN-----HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAA 426 (437)
Q Consensus 353 peVEVsvig~-----~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~A 426 (437)
.-|+|...+. .+.|+|.+.+++|+|.+|+.+|-+.++.|.++++.+.+ +.+...|.+.|.+-.. .+.|.+.
T Consensus 611 r~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~---L~~i~~~ 687 (702)
T PRK11092 611 KFMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDRVH---LANIMRK 687 (702)
T ss_pred eeEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCHHH---HHHHHHH
Confidence 3477777532 46899999999999999999999999999999987665 4545567888776422 3444454
Q ss_pred HHH
Q 013752 427 VHQ 429 (437)
Q Consensus 427 L~q 429 (437)
|++
T Consensus 688 Lr~ 690 (702)
T PRK11092 688 IRV 690 (702)
T ss_pred HhC
Confidence 443
No 100
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=82.12 E-value=4.9 Score=30.71 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=41.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS--SETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt--~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+-|..+.++|.+.++.+.|.++|+.|.+..+.. .++.....|.+ +.. ..+++.+.|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v--~~~----~~~~~~~~l~~~ 62 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV--DEP----VPDEVLEELRAL 62 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe--CCC----CCHHHHHHHHcC
Confidence 346788999999999999999999998887644 34555444444 332 244666666543
No 101
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=81.14 E-value=7.8 Score=43.83 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=49.9
Q ss_pred CcEEEEEEcC-----eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCC
Q 013752 353 AEIEVIVIHN-----HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEED 414 (437)
Q Consensus 353 peVEVsvig~-----~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~ 414 (437)
.-|+|....+ .+.|+|.+.+++|+|.+|+.+|-+.+..|.+.++...+ +.....|++.|.+-
T Consensus 595 r~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 662 (683)
T TIGR00691 595 KIIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY 662 (683)
T ss_pred cEEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH
Confidence 4577777432 46899999999999999999999999999999997763 55556677877764
No 102
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=80.61 E-value=2.7 Score=42.20 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=45.3
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCcchhHHHHHHHHHHHHHHH
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLL 286 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~-~~K~dKaSIL~~AI~YIk~Lq~~v 286 (437)
+|...+..||+|-..+|..|..||..||... .+|..|-..|.-|-.||--|-..+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 4566677899999999999999999999821 246667788999999998887665
No 103
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.09 E-value=11 Score=33.34 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=44.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
+.|-+..++++|.|.+++..+...|+.+.+...-.... .--|.|-+.++.. .+++.++|..+
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L 104 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSL 104 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHH
Confidence 44555558899999999999999999999998755433 3348888888643 23466666554
No 104
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=79.94 E-value=8.5 Score=35.51 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=53.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT-SSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS-t~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
..+.+.+.-..|-|.|.++++++-..++.|++.+=+ ..+++.--++++....- ...+++|..+|.++
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm--~~~V~~ii~kl~k~ 138 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM--EKDVDKIIEKLRKV 138 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh--hhhHHHHHHHHhcc
Confidence 357788888999999999999999999999999875 67888777777766532 23688888887654
No 105
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=79.34 E-value=11 Score=46.47 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=57.0
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE---EeeCC--eEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNI---TSSET--TVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnV---St~~~--~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
+.+.++|....++..|++++-.|+++||.|+.-.- ...++ ..+|.|.+....+.. ...+++.+.+.++|..|
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~-~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDA-LDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCcc-ccHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999998874 33222 345889998877654 36778888888877755
No 106
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.60 E-value=18 Score=29.60 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=40.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.++.|.-+.+||.|.++++.|- +.+|......... +.....+.++++++. ...+++.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~--~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGA--EELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcH--HHHHHHHHHHHH
Confidence 4688899999999999999998 5666655554322 333344556665521 135666666654
No 107
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=77.43 E-value=11 Score=32.79 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
+...|.|...++||+|.+|...+-.-|..|-..++...+..-+.-+++-+.++ ...+.|.+.|++++.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~---~~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDD---QRLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCc---hHHHHHHHHHhCCcC
Confidence 34678899999999999999999999999999888755544443344444432 257777777776554
No 108
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=77.41 E-value=16 Score=27.28 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=37.9
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 366 LKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 366 IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
|.|.+. ..+|.+.+++++|.+.|+.|.-.+.+..+ .++++-+.+. ..++..++||+.|
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~----~~~~~~~~lh~~~ 64 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED----DATKALRAVHERF 64 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH----HHHHHHHHHHHHH
Confidence 444443 46899999999999999999776554423 2333333332 3566677777765
No 109
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=76.60 E-value=2.2 Score=45.51 Aligned_cols=43 Identities=33% Similarity=0.413 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHccCCCC--cCCCCCcchhHHHHHHHHHH
Q 013752 239 VERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKE 281 (437)
Q Consensus 239 ~ER~RR~kmNe~f~~LRsLvP~~--~~~K~dKaSIL~~AI~YIk~ 281 (437)
+-|.||++-|-.|..|..++|-. ..+..||++|+.-|..|||.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 47999999999999999999972 13468999999999999974
No 110
>PRK08198 threonine dehydratase; Provisional
Probab=75.85 E-value=15 Score=38.39 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=47.8
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-----~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
+..+.+.|.-+.+||.|.++++.|-+.|.+|+..+..-. .+.+...+.+++.+. ...++|.++|.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~---~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP---EHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 456789999999999999999999999999988887532 244445555555322 135667777655
No 111
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.48 E-value=19 Score=27.64 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..+|.+.+++++|.+.++.|+ .+++.+ .++.+-++++ ..+++.++||+.|.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~--~~~~Se----~~is~~v~~~----~~~~av~~Lh~~f~ 63 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL--QTADSH----TTISCLVSED----DVKEAVNALHEAFE 63 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE--EEEcCc----cEEEEEEcHH----HHHHHHHHHHHHhc
Confidence 579999999999999999996 333322 2334434432 35667788887663
No 112
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.07 E-value=27 Score=26.24 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.++|.+.+++++|.+.|++|.-.+.+..+ .++.+-+.+. ..+++.++||+.|
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~----~~~~a~~~lh~~~ 64 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK----DAVKALNIIHTNL 64 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH----HHHHHHHHHHHHH
Confidence 46899999999999999999766554433 2333334432 2455667777654
No 113
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=71.31 E-value=23 Score=36.56 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=47.8
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-----ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-----~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
|..+.+.|.-+.+||.|.++++.+-+.+.+|++...... .+.+...+.+++.+. ...++|.++|.+.
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~---~~~~~i~~~L~~~ 374 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK---EHLDEILKILRDM 374 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH---HHHHHHHHHHHHc
Confidence 456789999999999999999999999999998876521 234444555555431 1356677777653
No 114
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=70.48 E-value=20 Score=40.77 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=53.9
Q ss_pred cCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 361 HNHVNLKIHC-PRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 361 g~~a~IkI~C-~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
+.+..+.|.. +.++|.|.++...|--+|+.|..|++.+ ++.....|.|...-+.. ..+..+.+++...+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~ 613 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQD-FDPQEFLQAYKSGV 613 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCC-CChHHHHHHHHHhh
Confidence 3334556655 9999999999999999999999999988 77777889988765543 35677777766554
No 115
>PRK06382 threonine dehydratase; Provisional
Probab=68.97 E-value=23 Score=37.17 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=45.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE----ee-CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNIT----SS-ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVS----t~-~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.+.+.|.-+.+||.|.+|++.|.+++++|++..+. .. .+.....|+++..+.. ..++|.+.|.+
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~---~~~~v~~~L~~ 398 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQD---HLDRILNALRE 398 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 46788899999999999999999999999887763 12 3344455666554211 24466666654
No 116
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.85 E-value=17 Score=28.05 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=36.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
+.+|++.+++++|.+.|+.|.-.+..+.+- ++++-+++. ..+...++||+.|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~~----~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVNDS----EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeHH----HHHHHHHHHHHHH
Confidence 457899999999999999997777665553 333434432 3566777888765
No 117
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.18 E-value=46 Score=24.76 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.++|.+.+++++|.+.|+.|.-.+.+..+ .-.+|.+ ... ..++..++||+.|.
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v--~~~----d~~~~~~~lh~~~~ 65 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGV--HNE----DADKAVKAIYEEFF 65 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEE--eHH----HHHHHHHHHHHHHh
Confidence 57899999999999999999766654322 2233444 332 24566777887663
No 118
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=65.05 E-value=22 Score=27.76 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 373 RPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 373 RpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
++|++.+++++|.+.|++|.-.+.+..+ ..+++-++++ ..++..++||+.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~----~~is~~V~~~----~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDRD----DYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe----eEEEEEEEHH----HHHHHHHHHHHHH
Confidence 6789999999999999999777765543 2334444443 3667788888765
No 119
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.68 E-value=30 Score=26.71 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
..+|++.+++++|.+.++.++....+ + ..+++-+++. ..++..++||+.|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s--~----~~is~vv~~~----d~~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN--D----LNLTFVVDED----QADGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC--C----CeEEEEEeHH----HHHHHHHHHHHHH
Confidence 57999999999999987777443332 2 1223333332 3567788888765
No 120
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=62.88 E-value=45 Score=23.97 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=36.5
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 365 NLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 365 ~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.|.|.+. .++|.+.+++++|.+.++.|...+.+. .+ .-.+|.+ ... ..+.+.+.||+.+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~-~~i~~~v--~~~----~~~~~~~~l~~~~ 63 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE-VNISFVV--DED----DADKAVKALHEEF 63 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc-eeEEEEE--eHH----HHHHHHHHHHHHH
Confidence 3555443 568899999999999999997776544 22 2233444 221 2344555666544
No 121
>PRK08526 threonine dehydratase; Provisional
Probab=61.76 E-value=42 Score=35.48 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=47.4
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-----eEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-----TVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-----~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|..+.+.|.-+.+||.|.++++.+-+.+.+|++.+...... .+...+.+++.+.. -.++|.++|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE---HQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 34688999999999999999999999999999998854322 24344555554321 35666666654
No 122
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=61.70 E-value=10 Score=35.70 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHH
Q 013752 239 VERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKEL 282 (437)
Q Consensus 239 ~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~L 282 (437)
-||.|.+.+|+.+.-|+.|+|.+...++.+.--|.-+-+||..|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 49999999999999999999996555444433344444555444
No 123
>PRK11899 prephenate dehydratase; Provisional
Probab=61.17 E-value=53 Score=33.27 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
..|-+..+++||.|.+++..+-..|+.......-...+ .--|.|-+.++... .-+.+.+||.++
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~---~d~~v~~aL~~l 259 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP---EDRNVALALEEL 259 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC---CCHHHHHHHHHH
Confidence 44555557899999999999999999998888765543 34589999888742 234466666654
No 124
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=60.94 E-value=21 Score=30.75 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.+.|.|.-..|+|+...+..+|-++|++|++.+=+..++.+--.+.+.+... ......+.+.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~--~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE--VVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH--hccHHHHHHHHHHHH
Confidence 4678888899999999999999999999998887777776543444433321 224444554444443
No 125
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.43 E-value=62 Score=23.93 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..+|.+.+++++|.+.++.|.-.+.+..+ .-.+|.+. .. ..+++.+.||+.|.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~--~~----~~~~~~~~Lh~~~~ 65 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA--ED----DGWAAVKAVHDEFG 65 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe--HH----HHHHHHHHHHHHhc
Confidence 46899999999999999999766654433 22334443 21 25666777777663
No 126
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=57.00 E-value=32 Score=27.57 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=35.4
Q ss_pred CcEEEEEEcCeEEEEEEcCCCC------ChHHHHHHHHHhCCCeEEEEEEEee
Q 013752 353 AEIEVIVIHNHVNLKIHCPRRP------GQLLKAIVALEDLRLTFLHLNITSS 399 (437)
Q Consensus 353 peVEVsvig~~a~IkI~C~rRp------GlLlkIl~ALEsLgLeVlhAnVSt~ 399 (437)
-.|.+++.++.+.|.|.+.+.. ..+..+-++|...|+.+.+.+|+..
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4666777789999999998753 3478899999999999999888653
No 127
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=55.85 E-value=40 Score=26.30 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=37.1
Q ss_pred CeEEEEEEcC----CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHH
Q 013752 362 NHVNLKIHCP----RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVH 428 (437)
Q Consensus 362 ~~a~IkI~C~----rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~ 428 (437)
+-..|.|..+ ..+|++.++.++|-+.|+.|...+ |. +++++-|+++ ..++..++||
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-S~------~~~~ilV~~~----~~~~A~~~L~ 64 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-SE------ISISILVKEE----DLEKAVEALH 64 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-ES------SEEEEEEEGG----GHHHHHHHHH
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-Ee------eeEEEEEeHH----HHHHHHHHhc
Confidence 3456777766 478999999999999999998877 32 2344445443 2455555555
No 128
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=54.01 E-value=11 Score=31.57 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=31.4
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHhcCCCCCchhhhh
Q 013752 10 GRCVKPIVLAVSLFICRWVFVFLQFLGDHLSVECFEQ 46 (437)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (437)
|||-+=+--...|-+.-|...+++|.+++-.||++-=
T Consensus 16 GRC~rCM~QLtvLs~~~w~iWw~~f~d~P~sieSIAL 52 (77)
T PF12292_consen 16 GRCQRCMWQLTVLSVLSWPIWWFFFRDTPTSIESIAL 52 (77)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 8888877766677777899999999999999999863
No 129
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=53.80 E-value=3.5 Score=46.55 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=54.4
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCCc---CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY---VQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~---~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l 296 (437)
++++.|+.+|.+||.++.-.|..|.+++-++. ..|+.++.-+...+.||..+++....+.++-..+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 67899999999999999999999999988732 2366677779999999999998887777665443
No 130
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=51.34 E-value=65 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEE
Q 013752 371 PRRPGQLLKAIVALEDLRLTFLHLN 395 (437)
Q Consensus 371 ~rRpGlLlkIl~ALEsLgLeVlhAn 395 (437)
...+|.+.+++++|.+.|+.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 3568999999999999999997775
No 131
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=49.89 E-value=48 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEE
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLN 395 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAn 395 (437)
.++|...+|+++|++.|+.|....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999998884
No 132
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=48.92 E-value=96 Score=22.53 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..+|.+.+++++|.+.++.|.-.+.+ + .-.+|.+ .+. ..+++.+.||+.|.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v--~~~----d~~~~~~~l~~~~~ 62 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLI--DED----DAEKAVRALHEAFE 62 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEE--eHH----HHHHHHHHHHHHhc
Confidence 46899999999999999999777632 2 1123443 331 34566777777653
No 133
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=48.60 E-value=69 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEe
Q 013752 373 RPGQLLKAIVALEDLRLTFLHLNITS 398 (437)
Q Consensus 373 RpGlLlkIl~ALEsLgLeVlhAnVSt 398 (437)
.+|.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 68999999999999999997665543
No 134
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.44 E-value=1.5e+02 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEE
Q 013752 371 PRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKI 411 (437)
Q Consensus 371 ~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKV 411 (437)
+..+|.+.+|+++|.+.|+.|-.... .. .-.+|++.-
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~--~~iSftv~~ 48 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SE--ISVALTLDN 48 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cC--CEEEEEEec
Confidence 56799999999999999999988753 22 224555543
No 135
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.22 E-value=1.2e+02 Score=22.05 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
..+|.+.+++++|.+.++.|.-.+.+ +.. .+|.+ ... ..+++.++||+.|
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~--is~~v--~~~----~~~~~~~~l~~~l 61 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMISTS--EIK--ISCLV--DED----DAEKAVRALHEAF 61 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEcc--CCe--EEEEE--eHH----HHHHHHHHHHHHh
Confidence 46899999999999999999777632 211 23333 321 3556677777765
No 136
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=44.43 E-value=1.3e+02 Score=24.08 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
..+|.+.+|+++|.+.|+.|-+... .+ .-.+|.+.-.+-.. ...++|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~--s~--~~isftv~~~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST--SE--VHVSMALHMENAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe--CC--CEEEEEEehhhcCh-HHHHHHHHHHHH
Confidence 3689999999999999999988853 22 22345554321101 034566666666
No 137
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=44.08 E-value=67 Score=36.83 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=47.8
Q ss_pred CCcEEEEEEcC-----eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEE-EEEEEEEcC
Q 013752 352 GAEIEVIVIHN-----HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVH-YSFNLKIEE 413 (437)
Q Consensus 352 ~peVEVsvig~-----~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl-~tf~vKVee 413 (437)
..-|+|....+ .+.|.|...+|+|+|.+|+++|-+.+..|++.+..+.++.+. ..|.+.|.+
T Consensus 611 er~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 611 ERVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred ceEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 34677776532 478899999999999999999999999999999977644433 456666655
No 138
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.92 E-value=1e+02 Score=24.78 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCC-CHHHHHHHHHH
Q 013752 371 PRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLG-SAEEIAAAVHQ 429 (437)
Q Consensus 371 ~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~-SaEEI~~AL~q 429 (437)
+..+|.+.+|+++|.+.++.|-+... .. .-.+|.+.-.+.+-.. ..++|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~--~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SE--TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CC--CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 45689999999999999999988853 22 2235555433311111 34566666665
No 139
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.90 E-value=1.6e+02 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEE
Q 013752 371 PRRPGQLLKAIVALEDLRLTFLHLN 395 (437)
Q Consensus 371 ~rRpGlLlkIl~ALEsLgLeVlhAn 395 (437)
+..+|.+.+|+++|.+.|+.|-...
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 3568999999999999999998885
No 140
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=43.81 E-value=1.3e+02 Score=31.96 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=45.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT-VHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~-Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
.+-+.-+++||.|.+++..|-..|++......-...+. --|.|-+.++... ....+.++|.++
T Consensus 299 sl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~---~d~~~~~aL~~l 362 (386)
T PRK10622 299 TLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL---RSAEMQKALKEL 362 (386)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC---CCHHHHHHHHHH
Confidence 33344478999999999999999999988887655444 4599999988642 223466666655
No 141
>PRK11898 prephenate dehydratase; Provisional
Probab=43.73 E-value=95 Score=31.35 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=44.6
Q ss_pred EEEEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 364 VNLKIHCPR-RPGQLLKAIVALEDLRLTFLHLNITSSETT-VHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 364 a~IkI~C~r-RpGlLlkIl~ALEsLgLeVlhAnVSt~~~~-Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
..|-+..++ ++|.|.+++..+...|+.+.+...-...+. --|.|-+.++... .-+.+.++|..+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~---~~~~~~~al~~L 262 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI---DDVLVAEALKEL 262 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC---CCHHHHHHHHHH
Confidence 445555555 599999999999999999999987655433 3488888887542 223455555444
No 142
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.68 E-value=1.4e+02 Score=22.54 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.++|++.+++++|.+.++.++ +.++.+ .++++-+.+. ..+.+.++||+.|
T Consensus 13 ~~~~v~~~i~~~L~~i~i~~i--~~~~s~----~~is~~V~~~----~~~~a~~~Lh~~f 62 (64)
T cd04917 13 ETAGVEKRIFDALEDINVRMI--CYGASN----HNLCFLVKEE----DKDEVVQRLHSRL 62 (64)
T ss_pred CCcCHHHHHHHHHHhCCeEEE--EEecCc----cEEEEEEeHH----HHHHHHHHHHHHH
Confidence 478999999999976444332 222222 2333334432 3566777787765
No 143
>PRK06291 aspartate kinase; Provisional
Probab=42.51 E-value=1.1e+02 Score=32.84 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=49.3
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.|++..+-+.|.|... .++|++.+++.+|.+.++.|+-.+.++.+. .|++-+.+. ..+...++||+.|
T Consensus 391 ~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~----~Is~vV~~~----d~~~av~~Lh~~f 461 (465)
T PRK06291 391 DVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEV----NISFVVDEE----DGERAVKVLHDEF 461 (465)
T ss_pred ceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccC----eEEEEEeHH----HHHHHHHHHHHHh
Confidence 4566667778888765 478999999999999999998777655553 334434432 2567788888876
No 144
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=42.35 E-value=1.3e+02 Score=22.38 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=34.2
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 370 CPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 370 C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.+..+|.+.+++++|.+.|+.|.-...+...+ ....+|.+. ++ ..+.+.+.|++..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~--~~----d~~~~~~~l~~~~ 65 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP--KS----DLKKALAVLEKLK 65 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec--HH----HHHHHHHHHHHHH
Confidence 36789999999999999999996554332222 222334443 21 2445556666644
No 145
>PRK08639 threonine dehydratase; Validated
Probab=41.47 E-value=1.2e+02 Score=32.12 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=42.5
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe--EEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT--VHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~--Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|..+.+++.-+.|||.|.++++.+-..+-+|+..+.....+. ....+.+++.+.. -.++|.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAE---DYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 446889999999999999999955555558887766432222 1122344444321 35677777765
No 146
>PLN02551 aspartokinase
Probab=41.38 E-value=1.3e+02 Score=33.25 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=47.6
Q ss_pred EEEEcCeEEEEEEcC--CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 357 VIVIHNHVNLKIHCP--RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 357 Vsvig~~a~IkI~C~--rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
|.+..+-+.|.|... +.+|++.+++++|.+.|+.|.-.+..+.+ ..|++-|++. ..++..++||+.|
T Consensus 439 V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSe----inIS~vV~~~----d~~~Av~aLH~~F 507 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASK----VNISLIVNDD----EAEQCVRALHSAF 507 (521)
T ss_pred EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCC----cEEEEEEeHH----HHHHHHHHHHHHH
Confidence 555566677777754 46899999999999999999777655543 2334444443 3677888888876
No 147
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=40.89 E-value=1.3e+02 Score=28.52 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=38.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEEc
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS---ETTVHYSFNLKIE 412 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~---~~~Vl~tf~vKVe 412 (437)
.+.+-|.-+.+||+|+++++-|-+.|.+|++.-.+.. ++++---+.++++
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 3566777889999999999999999999988877655 5665544555554
No 148
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=39.89 E-value=1.4e+02 Score=31.67 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=45.0
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS-SE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt-~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
|..+.+++.-+.|||.|.++++.+-+.+-+|++.+.-. .+ +.....+.+++.+.. -.++|.++|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKE---DFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 45688999999999999999997777777998887753 22 223333555555421 25667776665
No 149
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=39.06 E-value=1.9e+02 Score=24.74 Aligned_cols=66 Identities=12% Similarity=0.270 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..+.|....+|+.|.+++...+--|.-|...|.|+.-+.-...+.+.|... . +++-+...|.++.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~--R-~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD--R-SVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC--C-ChHHHHHHHHHHcc
Confidence 456777888999999999999999999999999876222222333333332 2 57777777777654
No 150
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=38.98 E-value=46 Score=37.99 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
..++|....|+|+|..|+.+|. +|.-+.|+|.+.+++-.|.++ ++. .-..|.++|..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~~---~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PGF---DRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Ccc---cHHHHHHHHHHHH
Confidence 6899999999999999999999 889999999999998888776 221 2455666666654
No 151
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=38.38 E-value=1.7e+02 Score=22.69 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
..+|.+.+++++|.+.++.|...+.+..+ .-++|.+. .. ..+++.+.|++.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~--~~----d~~~~~~~l~~~~ 64 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSE--HSISFVVD--ES----DADKALEALEEEF 64 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEe--HH----HHHHHHHHHHHHH
Confidence 56899999999999999999777655333 22334443 21 1344455566554
No 152
>PRK09034 aspartate kinase; Reviewed
Probab=38.07 E-value=1.4e+02 Score=32.12 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=47.4
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.|....+-+.|.|... ..+|++.+++++|.+.++.|.-.+.++.+ ..+++-+.+. ..++..++||+.|
T Consensus 378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se----~~Is~vV~~~----d~~~av~~LH~~f 448 (454)
T PRK09034 378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNE----DAEKAVKAIYNAF 448 (454)
T ss_pred eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc----ceEEEEEcHH----HHHHHHHHHHHHH
Confidence 4566677788888543 57899999999999999999877654433 3344444432 2456677788766
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=37.66 E-value=1.7e+02 Score=30.42 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=44.5
Q ss_pred EEEEcCeEEEEEE---cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 357 VIVIHNHVNLKIH---CPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 357 Vsvig~~a~IkI~---C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
|....+-+.|.|. ...++|.+.+++.+|.+.++.|...+.+..+.. .+|.+ ... ..+.+.+.|++.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V--~~~----d~~~a~~~L~~~~ 323 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTV--DET----DADEAVRALKDQS 323 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEE--eHH----HHHHHHHHHHHHH
Confidence 4455677888888 456899999999999999999987655332222 23333 321 2455666777755
No 154
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=37.29 E-value=2.1e+02 Score=28.47 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=42.8
Q ss_pred CeEEEEEEcCCCCC--hHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPG--QLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVH 428 (437)
Q Consensus 362 ~~a~IkI~C~rRpG--lLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~ 428 (437)
..+.++|.|.+.++ +...+++.|++.++.+.+.++... ++.+.-+..+....... ...|.|...|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~-~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYR-KTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCch-hhHHHHHHHHh
Confidence 36788999988765 588899999999999999998654 34443333333332211 24555655553
No 155
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=35.59 E-value=1.4e+02 Score=32.43 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=39.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCC
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEED 414 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~ 414 (437)
..|-+..++++|.|.++++.+...|+.+.|...-... ..--|.|-+.++..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~ 68 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA 68 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC
Confidence 4455555788999999999999999999999875433 33347888888743
No 156
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=34.93 E-value=16 Score=38.23 Aligned_cols=13 Identities=54% Similarity=1.073 Sum_probs=11.6
Q ss_pred CCCcCCCCccHHH
Q 013752 90 PSVFPFKEPNFQT 102 (437)
Q Consensus 90 ~~~~~~~~~~~~~ 102 (437)
|.||||+||++.-
T Consensus 254 psyFPFTEPS~Ev 266 (335)
T COG0016 254 PSYFPFTEPSAEV 266 (335)
T ss_pred cCCCCCCCCeEEE
Confidence 9999999999763
No 157
>PRK07431 aspartate kinase; Provisional
Probab=34.32 E-value=1.7e+02 Score=32.35 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=49.0
Q ss_pred EEEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 355 IEVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 355 VEVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
-++++..+-+.|.|... ..+|++.+++.+|.+.++.|+..+ +.+ +.+++-+.+. .++++.++||+.|
T Consensus 340 ~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe----~~Is~vv~~~----d~~~av~~Lh~~f 409 (587)
T PRK07431 340 AEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSE----VKVSCVIDAE----DGDKALRAVCEAF 409 (587)
T ss_pred CcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCC----CEEEEEEcHH----HHHHHHHHHHHHh
Confidence 45666677788888876 579999999999999999997766 222 3344444442 3677888888877
No 158
>PRK08210 aspartate kinase I; Reviewed
Probab=33.65 E-value=1.8e+02 Score=30.43 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=44.8
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.+.+..+-+.|.|... .++|.+.+++++|.+.++.|+. +++.+. .+++-+... ..++..++||+.|
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~----~is~vv~~~----~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHT----TIWVLVKEE----DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCC----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 4555666777777654 5799999999999999999975 333222 233333332 2566778888876
No 159
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=32.61 E-value=2.1e+02 Score=33.31 Aligned_cols=67 Identities=27% Similarity=0.315 Sum_probs=48.9
Q ss_pred EEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 357 VIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 357 Vsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
|++.++-+.|.|... ..+|++.+++.+|.+.++.|+-.+.++.+- +|++-+.+. ..+...++||+.|
T Consensus 390 i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~----~Is~vV~~~----d~~~al~~LH~~f 459 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSER----SISVVIDND----DATKALRACHQSF 459 (819)
T ss_pred EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccc----eEEEEEcHH----HHHHHHHHHHHHH
Confidence 566677788888876 478999999999999999998777655543 334444432 2566777788776
No 160
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=31.94 E-value=2.6e+02 Score=28.65 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=47.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
...|-+.-+++||.|.++|..|-..|++.-....-... ..--|.|-+.++..... ..|++||.++
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~---~~v~~AL~el 259 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD---PLVKEALEEL 259 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc---HhHHHHHHHH
Confidence 44555566699999999999999999998777765443 33448899999876542 4456665554
No 161
>PRK06291 aspartate kinase; Provisional
Probab=31.56 E-value=2.3e+02 Score=30.54 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=33.1
Q ss_pred EEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 013752 358 IVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSE 400 (437)
Q Consensus 358 svig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~ 400 (437)
....+-+.|.|... ..+|.+.+++++|.+.|+.|...+.++.+
T Consensus 316 t~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 316 TLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred EeeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 33456678888765 46899999999999999999877654433
No 162
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=31.14 E-value=2.4e+02 Score=29.27 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=42.3
Q ss_pred EEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 357 VIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 357 Vsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
+....+-+.|.|... .++|.+.+++++|.+.|+.|+. +++.+.. +++-+... ..+...++||+.|
T Consensus 331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~--i~~s~~~----is~vv~~~----d~~~av~~Lh~~f 398 (401)
T TIGR00656 331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM--IGSSETN----ISFLVDEK----DAEKAVRKLHEVF 398 (401)
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE--EEcCCCE----EEEEEeHH----HHHHHHHHHHHHH
Confidence 334445566666654 5899999999999999999974 3333322 23323322 3566778888776
No 163
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.08 E-value=53 Score=23.19 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 013752 238 AVERNRRRQMNDHLNTLRS 256 (437)
Q Consensus 238 ~~ER~RR~kmNe~f~~LRs 256 (437)
..=|+||++++.++..||+
T Consensus 11 eqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3458999999999999986
No 164
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=29.70 E-value=1.9e+02 Score=27.78 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCC-CCCCHHHHHHHHHHHHHhhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDC-KLGSAEEIAAAVHQIFSYIN 435 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~-~l~SaEEI~~AL~qil~~i~ 435 (437)
.+.|+|...+|||++-++.+-|..+|+.+.+....+. .+.----|++.+.-.- ...+.+.|.+++..+..-++
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~ 167 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELN 167 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhc
Confidence 4678889999999999999999999999887776432 2221123444443221 11357788888777665443
No 165
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=29.59 E-value=2.1e+02 Score=31.43 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEE-EEEEEEEcCC
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVH-YSFNLKIEED 414 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl-~tf~vKVee~ 414 (437)
..|-+..++++|-|.++++.++..|+.+.|...-... ..-- |.|-+.++..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC
Confidence 4455555778999999999999999999999875443 3333 7788888743
No 166
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.18 E-value=1.2e+02 Score=25.38 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=35.5
Q ss_pred EcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEEcCCC
Q 013752 369 HCPRRPGQLLKAIVALEDLRLTFLHLNIT--SSETTVHYSFNLKIEEDC 415 (437)
Q Consensus 369 ~C~rRpGlLlkIl~ALEsLgLeVlhAnVS--t~~~~Vl~tf~vKVee~~ 415 (437)
+-.-||.++.++--||..|++-|-.|.|. ..+++--........+++
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~ 54 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHD 54 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCC
Confidence 33458999999999999999999999995 456665545555555554
No 167
>PF15013 CCSMST1: CCSMST1 family
Probab=28.61 E-value=51 Score=27.60 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=23.1
Q ss_pred cchhhhhhHHHHHHHHHHHH-HhcCCCCCc-hhhhhhhhh
Q 013752 13 VKPIVLAVSLFICRWVFVFL-QFLGDHLSV-ECFEQEFIN 50 (437)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 50 (437)
.||+++.+||. ||+.| |||-+.=|+ +.|++.+.+
T Consensus 31 yq~~~is~sl~----~fliyFC~lReEnDiD~~L~~~L~e 66 (77)
T PF15013_consen 31 YQVYPISLSLA----AFLIYFCFLREENDIDRWLDKNLYE 66 (77)
T ss_pred eeeehhHHHHH----HHHHHHhhccccccHHHHHHhhHHh
Confidence 45666666654 57777 888888887 666665544
No 168
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=28.31 E-value=21 Score=37.26 Aligned_cols=12 Identities=58% Similarity=1.162 Sum_probs=10.8
Q ss_pred CCCcCCCCccHH
Q 013752 90 PSVFPFKEPNFQ 101 (437)
Q Consensus 90 ~~~~~~~~~~~~ 101 (437)
|.||||+||.+.
T Consensus 247 psyFPFTePS~E 258 (339)
T PRK00488 247 PSYFPFTEPSAE 258 (339)
T ss_pred CCCCCCCCCceE
Confidence 899999999974
No 169
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=28.08 E-value=2.7e+02 Score=30.44 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=41.3
Q ss_pred cCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 361 HNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 361 g~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
+..+.+.|.-|.|||.|.++++.|-. -+|...+....+ +.....+.+++.+.. ..++|.++|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~---~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQ---ERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 45799999999999999999999997 366666654322 222223444554321 25566666654
No 170
>PRK06635 aspartate kinase; Reviewed
Probab=26.23 E-value=2.7e+02 Score=28.99 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=43.3
Q ss_pred EEEEcCeEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 357 VIVIHNHVNLKIHC---PRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 357 Vsvig~~a~IkI~C---~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
|....+-+.|.|.. ...+|.+.+++++|.+.++.|.... +.+.. .+|.+ ... ..+...++||+.|
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~--ss~~~--is~vv--~~~----d~~~a~~~Lh~~f 401 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS--TSEIK--ISVLI--DEK----YLELAVRALHEAF 401 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE--ecCCe--EEEEE--cHH----HHHHHHHHHHHHH
Confidence 45556677788865 4678999999999999999997754 22211 23333 321 2455677777766
No 171
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.12 E-value=3.7e+02 Score=22.04 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=39.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC---CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE---TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~---~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
+++.|.-|.|||-|.+.++.|-. +.+|..-+....+ +.++..|.+ .+. ..+++.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~--~~~----~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQV--PDA----DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEe--ChH----HHHHHHHHHHH
Confidence 56788899999999999999943 6788887776443 334443443 321 35566666654
No 172
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=25.30 E-value=2.1e+02 Score=27.23 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
.+.+.-.+.||.|.++...+-..|..+-...+...+.--+.-++.-+..+. ...|.|...|++++..+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~--~~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDE--QVLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCc--chHHHHHHHHHhhccce
Confidence 456667889999999999999999999888886544333433444343321 25788888888887654
No 173
>PRK12483 threonine dehydratase; Reviewed
Probab=24.86 E-value=3.9e+02 Score=29.60 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=41.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
..+.+.|.-+.+||.|.++++.|-.. +|++.+....+ ......+.+++.+... ..++|.++|.+
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~--~~~~i~~~l~~ 408 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHD--PRAQLLASLRA 408 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhh--hHHHHHHHHHH
Confidence 35789999999999999999999988 77776665432 2232334444443221 12566666654
No 174
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.73 E-value=3.5e+02 Score=21.29 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 374 PGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 374 pGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
..++.++.+.+ ...++|++++|...++..+..|.+.+..+ .+++.+++..
T Consensus 16 ~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g~-----~~~~~~a~~~ 65 (76)
T PF09383_consen 16 EPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPGD-----DEEIEKAIAY 65 (76)
T ss_dssp SCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES------HHHHHHHHHH
T ss_pred chHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEECC-----HHHHHHHHHH
Confidence 44566665554 35688999999999999999999998643 4445555443
No 175
>PRK07431 aspartate kinase; Provisional
Probab=24.68 E-value=3.3e+02 Score=30.07 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=46.1
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.+.+..+-+.|.|.-. .++|++.+++++|.+.|+.|+... +.+ ..+++-+++. ..++..++||+.|.
T Consensus 512 ~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~S~----~~Is~vV~~~----~~~~av~~Lh~~f~ 581 (587)
T PRK07431 512 EVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSE----IRTSCVVAED----DGVKALQAVHQAFG 581 (587)
T ss_pred eEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--ccc----eEEEEEEeHH----HHHHHHHHHHHHhc
Confidence 3445556667777654 689999999999999999996655 211 2333434432 36778889998873
No 176
>PRK08818 prephenate dehydrogenase; Provisional
Probab=24.50 E-value=3.2e+02 Score=28.90 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=35.4
Q ss_pred EEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCC
Q 013752 365 NLKIHCP-RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEED 414 (437)
Q Consensus 365 ~IkI~C~-rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~ 414 (437)
.|.+.-+ ++||.|.+|+..|-..|+++.+..+..... --|.|.+.+...
T Consensus 297 ~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~-~~y~f~i~~~~~ 346 (370)
T PRK08818 297 TLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPA-GELHFRIGFEPG 346 (370)
T ss_pred EEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccC-ceEEEEEEEecc
Confidence 3444445 899999999999999999999888833322 224477777653
No 177
>PRK09224 threonine dehydratase; Reviewed
Probab=23.57 E-value=4e+02 Score=29.09 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=41.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
..+.+.|.-|.|||.|.++++.|- +-+|...+....+ +.....+.+++.+... ..++|.++|.+
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~--~~~~i~~~L~~ 391 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQE--ERAEIIAQLRA 391 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhh--HHHHHHHHHHH
Confidence 478999999999999999999998 5666666654322 2222234455543211 25667777654
No 178
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=23.43 E-value=4.4e+02 Score=28.59 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=48.4
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
+|.+..+-+.|.|.-. ..+|...+++++|.+.++.|+-.+ +.+ .++.+-|++. ..+...++||+.|.
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--sSe----~~Is~vV~~~----~~~~av~~LH~~~~ 445 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--SSE----ISISFVVDEK----DAEKAVRALHEAFF 445 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--cCC----ceEEEEEccH----HHHHHHHHHHHHHh
Confidence 5666667777777644 468999999999999999998777 222 2344445543 47788899998763
No 179
>PLN02317 arogenate dehydratase
Probab=21.99 E-value=4.3e+02 Score=28.29 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe---------------EEEEEEEEEcCC
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT---------------VHYSFNLKIEED 414 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~---------------Vl~tf~vKVee~ 414 (437)
..|-+.-+.++|.|.+++.++...++.+.+...-..... .-|.|-+.++..
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 334444467999999999999999999999887544332 238888888753
No 180
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=21.22 E-value=5.8e+02 Score=24.46 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=39.5
Q ss_pred EEEEEEcCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEE
Q 013752 355 IEVIVIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSF 407 (437)
Q Consensus 355 VEVsvig~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf 407 (437)
..|.+.+....+-+...++||.+-+|-..|-+.++.|-+.++... ++..+-.+
T Consensus 140 ~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl 194 (208)
T TIGR00719 140 FAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTI 194 (208)
T ss_pred EEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEE
Confidence 344444444566667789999999999999999999999999864 45554333
No 181
>PF14992 TMCO5: TMCO5 family
Probab=21.03 E-value=1.2e+02 Score=31.12 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013752 270 SIIGGAIDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 270 SIL~~AI~YIk~Lq~~v~~Le~~ke~l 296 (437)
.+..|+++||++||+.++.++.+++.+
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999988753
No 182
>PRK00907 hypothetical protein; Provisional
Probab=20.43 E-value=3.2e+02 Score=23.43 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=37.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeE--EEEEEE-eeCCeEEEEEEEEEcCCCCCCCHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTF--LHLNIT-SSETTVHYSFNLKIEEDCKLGSAEEIAAAVH 428 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeV--lhAnVS-t~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~ 428 (437)
++-|||.-..++++...|++.++.+.=++ -+..+- +.+|+ ++++++.+....+. -.+.|.++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~Gk-Y~Svtv~i~ats~e-Qld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGK-YVSVRIGFRAESRE-QYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCE-EEEEEEEEEECCHH-HHHHHHHHHh
Confidence 57888888999999999999999885433 333332 22333 34555554432211 2455555544
No 183
>PLN02551 aspartokinase
Probab=20.16 E-value=3.9e+02 Score=29.56 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=30.5
Q ss_pred EcCeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEE
Q 013752 360 IHNHVNLKIHCPR---RPGQLLKAIVALEDLRLTFLHLN 395 (437)
Q Consensus 360 ig~~a~IkI~C~r---RpGlLlkIl~ALEsLgLeVlhAn 395 (437)
..+-+.|.|.+.. .+|.+.+|+..|.++|+.|....
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is 401 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 401 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe
Confidence 3556889998774 68999999999999999998874
Done!