Query 013752
Match_columns 437
No_of_seqs 205 out of 1206
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.3E-15 7.8E-20 123.1 7.6 67 230-297 4-70 (82)
2 1nkp_B MAX protein, MYC proto- 99.5 1.6E-14 5.6E-19 117.8 7.3 66 232-297 2-67 (83)
3 1hlo_A Protein (transcription 99.5 1.4E-14 4.9E-19 117.6 7.0 69 229-297 9-77 (80)
4 1nkp_A C-MYC, MYC proto-oncoge 99.5 8.1E-14 2.8E-18 115.5 7.9 69 228-296 2-71 (88)
5 4h10_B Circadian locomoter out 99.5 4.8E-14 1.6E-18 112.9 5.9 60 230-290 6-65 (71)
6 1an4_A Protein (upstream stimu 99.4 3.8E-14 1.3E-18 110.6 2.5 56 231-286 4-63 (65)
7 4ati_A MITF, microphthalmia-as 99.4 5.8E-13 2E-17 115.9 7.3 63 232-294 27-91 (118)
8 1nlw_A MAD protein, MAX dimeri 99.4 1.1E-12 3.8E-17 107.0 8.5 65 233-297 2-67 (80)
9 1a0a_A BHLH, protein (phosphat 99.4 1E-13 3.5E-18 108.4 1.7 55 232-286 2-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.3 3.6E-13 1.2E-17 108.3 3.2 56 229-284 6-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 7.6E-13 2.6E-17 107.1 2.8 60 231-290 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 1.1E-11 3.7E-16 98.4 5.6 59 229-287 9-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 9.8E-11 3.3E-15 90.7 5.7 56 232-287 2-58 (60)
14 4f3l_A Mclock, circadian locom 98.8 4.4E-09 1.5E-13 104.8 5.4 55 230-285 10-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 2.5E-08 8.5E-13 100.6 5.3 55 231-285 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 5.2E-08 1.8E-12 77.2 1.6 46 239-284 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.0 9.3E-06 3.2E-10 66.7 6.4 51 244-294 4-56 (83)
18 4aya_A DNA-binding protein inh 97.9 1.2E-05 4.3E-10 67.7 6.0 48 240-287 33-81 (97)
19 1zpv_A ACT domain protein; str 97.2 0.0047 1.6E-07 48.9 11.9 68 363-433 5-72 (91)
20 1u8s_A Glycine cleavage system 96.2 0.022 7.5E-07 51.5 9.8 67 363-433 6-72 (192)
21 2ko1_A CTR148A, GTP pyrophosph 96.0 0.019 6.6E-07 44.6 7.1 51 363-413 5-55 (88)
22 2nyi_A Unknown protein; protei 95.6 0.04 1.4E-06 50.4 8.7 50 363-412 5-54 (195)
23 2nyi_A Unknown protein; protei 95.5 0.05 1.7E-06 49.7 8.8 71 362-434 92-166 (195)
24 1u8s_A Glycine cleavage system 95.4 0.12 4E-06 46.7 10.9 71 363-434 93-169 (192)
25 3obi_A Formyltetrahydrofolate 93.1 0.45 1.5E-05 46.6 10.1 71 362-434 5-77 (288)
26 3n0v_A Formyltetrahydrofolate 93.1 0.5 1.7E-05 46.3 10.5 71 362-435 7-79 (286)
27 3o1l_A Formyltetrahydrofolate 93.0 0.5 1.7E-05 46.7 10.3 70 363-434 22-93 (302)
28 3p96_A Phosphoserine phosphata 92.4 0.38 1.3E-05 48.0 8.8 71 362-434 11-81 (415)
29 3lou_A Formyltetrahydrofolate 91.8 0.68 2.3E-05 45.5 9.6 71 362-434 9-83 (292)
30 3nrb_A Formyltetrahydrofolate 90.1 1.2 3.9E-05 43.7 9.4 69 362-434 6-76 (287)
31 2f1f_A Acetolactate synthase i 89.4 0.55 1.9E-05 42.5 6.0 65 364-432 4-70 (164)
32 2jhe_A Transcription regulator 88.4 0.94 3.2E-05 38.8 6.6 35 365-399 2-36 (190)
33 2pc6_A Probable acetolactate s 87.2 0.58 2E-05 42.5 4.6 65 364-432 5-71 (165)
34 2fgc_A Acetolactate synthase, 85.7 1.3 4.6E-05 41.2 6.4 66 363-432 29-96 (193)
35 1y7p_A Hypothetical protein AF 82.1 2.9 9.9E-05 39.9 7.1 61 363-429 4-69 (223)
36 2f06_A Conserved hypothetical 73.2 18 0.00063 30.5 9.0 57 366-430 75-131 (144)
37 2re1_A Aspartokinase, alpha an 71.5 19 0.00066 31.5 9.0 66 356-431 96-164 (167)
38 2dtj_A Aspartokinase; protein- 57.9 31 0.0011 30.6 7.7 67 356-432 88-157 (178)
39 2dt9_A Aspartokinase; protein- 54.2 38 0.0013 29.5 7.6 67 356-432 88-157 (167)
40 3s1t_A Aspartokinase; ACT doma 53.4 32 0.0011 30.9 7.0 67 356-432 89-158 (181)
41 2dt9_A Aspartokinase; protein- 52.1 47 0.0016 28.9 7.9 39 358-396 11-50 (167)
42 3s8f_C Cytochrome C oxidase po 51.4 7.5 0.00026 26.8 1.9 21 17-37 12-33 (34)
43 2qmx_A Prephenate dehydratase; 51.0 37 0.0013 33.0 7.5 65 363-430 200-265 (283)
44 2dtj_A Aspartokinase; protein- 51.0 45 0.0015 29.5 7.6 53 358-410 10-66 (178)
45 2re1_A Aspartokinase, alpha an 50.4 35 0.0012 29.8 6.7 41 357-397 19-60 (167)
46 3luy_A Probable chorismate mut 49.0 1.2E+02 0.004 30.1 11.0 57 372-431 217-274 (329)
47 3mwb_A Prephenate dehydratase; 44.9 62 0.0021 31.9 8.2 65 363-430 201-267 (313)
48 2qmw_A PDT, prephenate dehydra 44.1 51 0.0018 31.8 7.3 66 362-431 185-254 (267)
49 2f06_A Conserved hypothetical 38.8 97 0.0033 25.9 7.5 34 365-398 8-41 (144)
50 3dhx_A Methionine import ATP-b 36.9 1.5E+02 0.0051 24.1 8.1 49 374-428 35-83 (106)
51 3ab4_A Aspartokinase; aspartat 35.7 1E+02 0.0035 31.0 8.3 67 356-432 337-406 (421)
52 3ab4_A Aspartokinase; aspartat 34.8 1.8E+02 0.0063 29.1 10.0 40 357-396 258-298 (421)
53 1ygy_A PGDH, D-3-phosphoglycer 34.7 1.6E+02 0.0056 30.5 9.8 66 359-430 450-517 (529)
54 3he4_B Synzip5; heterodimeric 33.7 52 0.0018 23.3 4.0 26 272-297 5-30 (46)
55 3tvi_A Aspartokinase; structur 32.2 1.2E+02 0.0043 31.0 8.4 69 356-432 367-438 (446)
56 2l5g_A GPS2 protein, G protein 31.5 62 0.0021 22.7 4.0 31 265-295 3-33 (38)
57 3mah_A Aspartokinase; aspartat 30.7 62 0.0021 27.8 5.0 68 355-432 80-150 (157)
58 2wt7_A Proto-oncogene protein 27.9 1.4E+02 0.0047 22.4 5.9 42 240-296 1-42 (63)
59 2er8_A Regulatory protein Leu3 27.1 40 0.0014 25.1 2.8 21 276-296 48-68 (72)
60 4go7_X Aspartokinase; transfer 26.9 1.9E+02 0.0064 26.5 7.8 54 358-411 30-87 (200)
61 1rwu_A Hypothetical UPF0250 pr 26.2 1.3E+02 0.0043 25.3 5.9 48 363-411 36-86 (109)
62 3byp_A CZRB protein; membrane 25.8 2.3E+02 0.0077 21.8 7.6 56 376-431 11-70 (94)
63 3c1m_A Probable aspartokinase; 25.4 1.3E+02 0.0043 30.9 7.0 69 356-432 397-468 (473)
64 4go7_X Aspartokinase; transfer 25.2 1.7E+02 0.0059 26.8 7.2 67 356-432 108-177 (200)
65 2rrl_A FLIK, flagellar HOOK-le 24.7 1.3E+02 0.0043 27.4 6.0 48 352-399 100-153 (169)
66 1zme_C Proline utilization tra 24.7 58 0.002 24.0 3.3 22 276-297 43-64 (70)
67 1phz_A Protein (phenylalanine 23.5 71 0.0024 33.1 4.6 66 363-432 34-100 (429)
68 3s1t_A Aspartokinase; ACT doma 23.1 1.9E+02 0.0066 25.6 7.0 51 360-410 13-67 (181)
69 2zbc_A 83AA long hypothetical 22.5 2.4E+02 0.0081 20.8 6.5 61 363-434 3-63 (83)
70 3l76_A Aspartokinase; alloster 22.4 2.2E+02 0.0075 30.2 8.3 68 355-432 347-417 (600)
71 3ced_A Methionine import ATP-b 21.1 3.2E+02 0.011 21.8 8.9 37 376-413 36-72 (98)
72 1pd7_B MAD1; PAH2, SIN3, eukar 21.1 1E+02 0.0036 19.9 3.3 19 266-284 2-20 (26)
73 1p3q_Q VPS9P, vacuolar protein 20.4 77 0.0026 23.7 3.1 23 238-260 3-25 (54)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=2.3e-15 Score=123.13 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=61.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013752 230 ESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 230 e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
..+|.+|+.+||+||.+||+.|..|++|||+. ..|+||++||.+||+||++||.+++.|+.+.+.+.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999984 48999999999999999999999999999887654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.52 E-value=1.6e-14 Score=117.80 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=60.4
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||+.|+++++.|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999984457999999999999999999999999998877654
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.4e-14 Score=117.56 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=63.0
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013752 229 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 229 ~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
...+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||+.|+++++.|+.+++.+.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999985446899999999999999999999999999987654
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=8.1e-14 Score=115.50 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=60.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013752 228 EVESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-VQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 228 e~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~-~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l 296 (437)
|+..+|.+|+..||+||.+||+.|..|+++||... ..|.+|++||.+||+||++|+.+.+.|..+++.+
T Consensus 2 ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999831 3699999999999999999999999888766543
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=4.8e-14 Score=112.86 Aligned_cols=60 Identities=25% Similarity=0.501 Sum_probs=55.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 013752 230 ESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLE 290 (437)
Q Consensus 230 e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le 290 (437)
..+|.+|+.+||+||++||+.|..|++|||.+ ..|+||++||..||+||+.||.++.-|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46789999999999999999999999999973 4699999999999999999999987765
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=3.8e-14 Score=110.64 Aligned_cols=56 Identities=29% Similarity=0.503 Sum_probs=50.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCCcC----CCCCcchhHHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYV----QRGDQASIIGGAIDFVKELEQLL 286 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~----~K~dKaSIL~~AI~YIk~Lq~~v 286 (437)
.+|.+|+.+||+||.+||+.|..|++|||.... .|++|++||.+||+||+.||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999998532 27899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.38 E-value=5.8e-13 Score=115.87 Aligned_cols=63 Identities=24% Similarity=0.476 Sum_probs=52.9
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELEQLLQSLEAQKR 294 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~--~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke 294 (437)
+|.+|+.+||+||.+||++|..|++|||.+. ..|++|++||.+||+||++||++++.|+....
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999842 24788999999999999999999999987543
No 8
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=1.1e-12 Score=106.96 Aligned_cols=65 Identities=28% Similarity=0.294 Sum_probs=58.4
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHccCCCC-cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013752 233 RMTHIAVERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 233 r~~H~~~ER~RR~kmNe~f~~LRsLvP~~-~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
|.+|+..||+||..||+.|..|+++||.. ...|.+|++||..|++||+.|+++.+.|+.+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999972 246888999999999999999999999998887653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.36 E-value=1e-13 Score=108.38 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=49.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCCc-----CCCCCcchhHHHHHHHHHHHHHHH
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAY-----VQRGDQASIIGGAIDFVKELEQLL 286 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~-----~~K~dKaSIL~~AI~YIk~Lq~~v 286 (437)
+|.+|+.+||+||.+||..|..|++|||+.. .++.+||+||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999731 256779999999999999999875
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=3.6e-13 Score=108.25 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=50.2
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCcchhHHHHHHHHHHHHH
Q 013752 229 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAY--VQRGDQASIIGGAIDFVKELEQ 284 (437)
Q Consensus 229 ~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~--~~K~dKaSIL~~AI~YIk~Lq~ 284 (437)
..++|.+|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999731 3799999999999999999874
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.29 E-value=7.6e-13 Score=107.09 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=48.0
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCC-CcCCCC-CcchhHHHHHHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPP-AYVQRG-DQASIIGGAIDFVKELEQLLQSLE 290 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~-~~~~K~-dKaSIL~~AI~YIk~Lq~~v~~Le 290 (437)
.+|.+|+..||+||..||+.|..||.+||. ....|. .|++||..||+||+.||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999995 212344 578899999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.21 E-value=1.1e-11 Score=98.36 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=53.0
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHH
Q 013752 229 VESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQ 287 (437)
Q Consensus 229 ~e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~ 287 (437)
...+|..|+..||+|+..||+.|..||.+||.....|.+|+.||..||+||..|++.++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34578999999999999999999999999998545789999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.09 E-value=9.8e-11 Score=90.71 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=50.6
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHccCCCC-cCCCCCcchhHHHHHHHHHHHHHHHH
Q 013752 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQ 287 (437)
Q Consensus 232 ~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~-~~~K~dKaSIL~~AI~YIk~Lq~~v~ 287 (437)
+|..|+..||+|+..||+.|..||.+||.. ...|.+|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999973 24688999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=4.4e-09 Score=104.77 Aligned_cols=55 Identities=24% Similarity=0.504 Sum_probs=42.9
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHH
Q 013752 230 ESQRMTHIAVERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQL 285 (437)
Q Consensus 230 e~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~ 285 (437)
..+|.+|+.+||+||++||..|..|++|||.. ..|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 34678899999999999999999999999943 68999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.60 E-value=2.5e-08 Score=100.64 Aligned_cols=55 Identities=27% Similarity=0.491 Sum_probs=48.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHccCCCC--cCCCCCcchhHHHHHHHHHHHHHH
Q 013752 231 SQRMTHIAVERNRRRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKELEQL 285 (437)
Q Consensus 231 ~~r~~H~~~ER~RR~kmNe~f~~LRsLvP~~--~~~K~dKaSIL~~AI~YIk~Lq~~ 285 (437)
+.|.+|+.+||+||++||+.|..|++|||.+ ...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3578999999999999999999999999941 157999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.42 E-value=5.2e-08 Score=77.24 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHccCCCC-cCCCCCcchhHHHHHHHHHHHHH
Q 013752 239 VERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQ 284 (437)
Q Consensus 239 ~ER~RR~kmNe~f~~LRsLvP~~-~~~K~dKaSIL~~AI~YIk~Lq~ 284 (437)
.||+|+..||+.|..||.+||.. ..+|.+|..||.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999972 23688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.00 E-value=9.3e-06 Score=66.65 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHccCCCC--cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013752 244 RRQMNDHLNTLRSLMPPA--YVQRGDQASIIGGAIDFVKELEQLLQSLEAQKR 294 (437)
Q Consensus 244 R~kmNe~f~~LRsLvP~~--~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke 294 (437)
|..||+++..|..|||.+ ...|..|.+||..|++||++||+.++.+.++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999973 234778999999999999999998888876544
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=67.69 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHccCCCC-cCCCCCcchhHHHHHHHHHHHHHHHH
Q 013752 240 ERNRRRQMNDHLNTLRSLMPPA-YVQRGDQASIIGGAIDFVKELEQLLQ 287 (437)
Q Consensus 240 ER~RR~kmNe~f~~LRsLvP~~-~~~K~dKaSIL~~AI~YIk~Lq~~v~ 287 (437)
||.|-..||+.|..||.+||.. ..+|..|..+|.-||+||..|++.++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999972 24688999999999999999998874
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.24 E-value=0.0047 Score=48.93 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=56.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSY 433 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~ 433 (437)
.+.|.|.|+.+||+|.+|...|-+.|+.|++.+....++.....+.+.+.+. ...++|.++|.++...
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK---QDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC---CCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC---CCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999887776666666666552 2588999999887654
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.23 E-value=0.022 Score=51.54 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSY 433 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~ 433 (437)
.+.|.|.|+.|||++.+|...|-++|++|+.+++.+..+.....+.+.... ...++|.++|.++...
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999988777766566665432 1467788888876643
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.98 E-value=0.019 Score=44.64 Aligned_cols=51 Identities=4% Similarity=0.113 Sum_probs=41.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcC
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEE 413 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee 413 (437)
.+.|+|.+.++||+|.+|.++|.+.|+.|.+.++...++.....|.+.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 467899999999999999999999999999999987666443455555543
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.61 E-value=0.04 Score=50.40 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEc
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIE 412 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVe 412 (437)
.+.|.|.|+.|||++.+|...|.++|+.|+.+++.+..+.+.-.+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 57899999999999999999999999999999998877765545555443
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.46 E-value=0.05 Score=49.73 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE----TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~----~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
..+.|.|.|+.|||++..|-..|-++|+.|+.++..+.+ ..-++.+.+.+.-... .. ++|.++|..+...+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~-~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFP-LY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGG-GH-HHHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCC-cc-HHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999998765 2222233333321112 24 78888888776654
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.38 E-value=0.12 Score=46.71 Aligned_cols=71 Identities=7% Similarity=0.106 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE------TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~------~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
.+.|.|.|+.++|++.+|.+.|-++|++|..+...+.+ +.-.+.+.+.+.... ....+++.++|..+....
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999987764 122223333332211 236889999998877654
No 25
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.10 E-value=0.45 Score=46.64 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
..+.|.|.|+.|+|+..+|-..|-++|+.|+.++-.+. ++.++-.+.+.+.+. ..+.+++.+++..+-..+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK--VIPLASLRTGFGVIAAKF 77 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC--CCCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC--CCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999997533 344433334444332 136889999988776554
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=93.09 E-value=0.5 Score=46.25 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=53.6
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYIN 435 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i~ 435 (437)
..+.|.|.|++|+|+..+|-..|-++|+.|+.++-++. ++.++ +.+.+.-... .+.+++.+++..+-..++
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~-~~~~~L~~~f~~la~~l~ 79 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFF--IRVEFRQPDD-FDEAGFRAGLAERSEAFG 79 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCSS-CCHHHHHHHHHHHHGGGT
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeE--EEEEEecCCC-CCHHHHHHHHHHHHHHcC
Confidence 35889999999999999999999999999999998743 34433 3444432222 468999999987766543
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=92.98 E-value=0.5 Score=46.71 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=53.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
.+.|.|.|+.|+|+...|-..|-++|+.|+.++-+.. ++.++ +.+.+.-.....+.+++.+++..+-..+
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff--Mr~~~~~~~~~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFF--MRHEIRADTLPFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEE--EEEEEEGGGSSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE--EEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999998765 34433 3444432211236889999988766544
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=92.38 E-value=0.38 Score=47.98 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=55.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
..+.|.|.|+.|||+...|...|-++|..|+.++-+..++.++-.+.+.+.+.. .+.++|.+++..+...+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 81 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV--ADGPALRHDVEAAIRKV 81 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH--HTSHHHHHHHHHHHHHT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc--CCHHHHHHHHHHHHHHc
Confidence 368899999999999999999999999999999998888876555555544321 13578888887765443
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=91.82 E-value=0.68 Score=45.46 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCC--CCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEED--CKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~--~~l~SaEEI~~AL~qil~~i 434 (437)
..+.|.|.|+.|+|+..+|-..|-++|+.|++++-++. ++.++ +.+.+... ....+.+++.+++..+-..+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~~~~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF--VRCVFHATDDADALRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE--EEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE--EEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999998753 34443 34443322 10136889999988766544
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=90.14 E-value=1.2 Score=43.69 Aligned_cols=69 Identities=12% Similarity=0.200 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 362 NHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 362 ~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
..+.|.|.|+.|+|+...|-..|-++|+.|+.++-.+. ++.+ .+.+.+.... ...+++.+++..+-..+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~F--fmr~~~~~~~--~~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKF--FMRVSVEIPV--AGVNDFNSAFGKVVEKY 76 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEE--EEEEEEECCC-----CHHHHHHHHHHGGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeE--EEEEEEEcCC--CCHHHHHHHHHHHHHHc
Confidence 36889999999999999999999999999999998643 3333 3344444321 13457888887665544
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=89.39 E-value=0.55 Score=42.52 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..|.|...++||+|.+|...|...|.+|.++++.... +....+|.+. .+ . ...+.|.+.|+++..
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d-~-~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD-E-KVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC-H-HHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc-H-HHHHHHHHHHcCCCC
Confidence 4688899999999999999999999999999996544 4444455554 22 1 246777777776543
No 32
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.43 E-value=0.94 Score=38.78 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS 399 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~ 399 (437)
.|+|.|.+|+|+|.+|+++|-+.++++..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47899999999999999999999999999999665
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=87.15 E-value=0.58 Score=42.51 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 364 VNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE--TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 364 a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~--~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
..|.|...++||+|.+|...|...|.+|.++++.... +....+|.+. ... ...+.|.+.|+++..
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~d~--~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--GPD--EIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--ECH--HHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--ccH--HHHHHHHHHhcCCCC
Confidence 4688889999999999999999999999999996543 4454555654 221 246777777777654
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=85.75 E-value=1.3 Score=41.24 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-C-CeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS-E-TTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~-~-~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
...|.|..+++||.|.+|...|...|+.|.+.++... + +....+|.+.-.+ ...+.|.+.|.+++.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e----~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD----KTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT----THHHHHHHHHTTSTT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH----HHHHHHHHHhcCcCc
Confidence 3568888899999999999999999999999998643 3 4444556664221 247888888877543
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=82.14 E-value=2.9 Score=39.86 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=43.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSE-----TTVHYSFNLKIEEDCKLGSAEEIAAAVHQ 429 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~-----~~Vl~tf~vKVee~~~l~SaEEI~~AL~q 429 (437)
.+.|.|.+.+|+|+|.+|+..|-+.+..|.+.|..... +... +++++.+. ..++|.+.|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~--I~IEV~d~----~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKAL--IYFEIEGG----DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEE--EEEEECSS----CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEE--EEEEECCC----CHHHHHHHHhC
Confidence 47889999999999999999999999999999997753 3332 33666654 36777776654
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=73.21 E-value=18 Score=30.47 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=39.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 366 LKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 366 IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
|-+.-+.+||.+.+++++|.+.|+.|...-.+..+.+....| ..+ ..+...++||+.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~~------d~~~A~~~L~~~ 131 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RPS------NMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EES------CHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--EeC------CHHHHHHHHHHc
Confidence 555667999999999999999999996655442344443333 332 467777777764
No 37
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=71.46 E-value=19 Score=31.50 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=45.8
Q ss_pred EEEEEcCeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCPR---RPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 356 EVsvig~~a~IkI~C~r---RpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.|....+-+.|.|.... ++|.+.+++++|.+.|+.|...+ +.+..+. +.+ +.. ..++..++||+.|
T Consensus 96 ~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is--~vv--~~~----d~~~av~~Lh~~f 164 (167)
T 2re1_A 96 SIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVS--VLI--DEK----YMELATRVLHKAF 164 (167)
T ss_dssp EEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEE--EEE--EGG----GHHHHHHHHHHHT
T ss_pred eEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEE--EEE--eHH----HHHHHHHHHHHHh
Confidence 34556677888888765 89999999999999999998854 4443332 222 321 3566777777765
No 38
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=57.90 E-value=31 Score=30.56 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=47.2
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|...++-+.|.|... ..+|.+.+++++|.+.|+.|.-.+ +.+-.+ .+-|++. ..++..++||+.|.
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I----s~vV~~~----d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI----SVLIRED----DLDAAARALHEQFQ 157 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE----EEEEEGG----GHHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE----EEEEeHH----HHHHHHHHHHHHHc
Confidence 4566677788888765 578999999999999999997744 444332 2223322 36778888888764
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=54.19 E-value=38 Score=29.47 Aligned_cols=67 Identities=24% Similarity=0.241 Sum_probs=46.8
Q ss_pred EEEEEcCeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCPR---RPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~r---RpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|.+.++-+.|.|.... +||.+.+++++|.+.|+.|.-.+ +.+-+ +.+-+++. ..++..++||+.+.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~----is~vv~~~----d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVR----ISVIIPAE----YAEAALRAVHQAFE 157 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSE----EEEEEEGG----GHHHHHHHHHHHTC
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCE----EEEEEeHH----HHHHHHHHHHHHHc
Confidence 56666777888888764 89999999999999999995543 33332 23333332 36777888887653
No 40
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=53.35 E-value=32 Score=30.86 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=47.5
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
+|.+..+-+.|.|.-. ..||++.+++++|.+.++.|...+ +.+-. +.+-+++. ..++..++||+.|.
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~----Is~vV~~~----d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIR----ISVLCRDT----ELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTE----EEEEEEGG----GHHHHHHHHHHHHT
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCE----EEEEEeHH----HHHHHHHHHHHHHc
Confidence 4555677777877654 689999999999999999988777 33332 33334432 36778888888773
No 41
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=52.11 E-value=47 Score=28.87 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.2
Q ss_pred EEEcCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEE
Q 013752 358 IVIHNHVNLKIHC-PRRPGQLLKAIVALEDLRLTFLHLNI 396 (437)
Q Consensus 358 svig~~a~IkI~C-~rRpGlLlkIl~ALEsLgLeVlhAnV 396 (437)
....+.+.|.|.. +.++|.+.+|+.+|.+.|+.|.....
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEB
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 3445667777764 67899999999999999988876554
No 42
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=51.42 E-value=7.5 Score=26.76 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=14.9
Q ss_pred hhhhHHHH-HHHHHHHHHhcCC
Q 013752 17 VLAVSLFI-CRWVFVFLQFLGD 37 (437)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~ 37 (437)
|+.|.+|| .-|++||+.|+.+
T Consensus 12 V~ilg~~I~i~W~~vf~lFl~R 33 (34)
T 3s8f_C 12 ILVLTLTILVFWLGVYAVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHeeeecC
Confidence 45555555 4699999998864
No 43
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=51.03 E-value=37 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.284 Sum_probs=47.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETT-VHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~-Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
...|-+..+++||.|.+++..+...|++......-...+. --|.|-+.++.... -+.+.++|.++
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~---d~~v~~aL~~L 265 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHRE---DQNVHNALENL 265 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTT---SHHHHHHHHHH
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCC---cHHHHHHHHHH
Confidence 3444444468999999999999999999998887655443 44889998876422 24566666655
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=50.97 E-value=45 Score=29.49 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=35.2
Q ss_pred EEEcCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 013752 358 IVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLNITSS---ETTVHYSFNLK 410 (437)
Q Consensus 358 svig~~a~IkI~-C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~---~~~Vl~tf~vK 410 (437)
....+.+.|.|. -+.++|.+.+|++.|.+.|+.|.....++. ++..-.+|++.
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 344566777774 578999999999999999966655543322 22333445554
No 45
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=50.36 E-value=35 Score=29.75 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=32.5
Q ss_pred EEEEcCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEE
Q 013752 357 VIVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLNIT 397 (437)
Q Consensus 357 Vsvig~~a~IkI~-C~rRpGlLlkIl~ALEsLgLeVlhAnVS 397 (437)
|....+.+.|.|. -+.++|.+.+|++.|.+.|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 3444566778887 4789999999999999999998776543
No 46
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=49.01 E-value=1.2e+02 Score=30.15 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 372 RRPGQLLKAIVALEDLRLTFLHLNITSSETTV-HYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 372 rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~V-l~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
++||.|.++|..|-..|++......-...+.. -|.|-+.++... .-+.+++||.++-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~---~d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAP---WEERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCT---TSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCc---CCHHHHHHHHHHH
Confidence 58999999999999999999988887665554 489999887642 2355777777653
No 47
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=44.95 E-value=62 Score=31.94 Aligned_cols=65 Identities=14% Similarity=0.343 Sum_probs=46.6
Q ss_pred eEEEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 363 HVNLKIHCP-RRPGQLLKAIVALEDLRLTFLHLNITSSETT-VHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 363 ~a~IkI~C~-rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~-Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
...|-+.-+ ++||.|.++|..|...|++......-...+. --|.|-+.++... .-+.+.++|.++
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~---~d~~v~~aL~~L 267 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHA---TDSRVADALAGL 267 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCT---TSHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCC---CcHHHHHHHHHH
Confidence 355556665 7999999999999999999988887554433 2388888887542 234466666654
No 48
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=44.11 E-value=51 Score=31.77 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=47.8
Q ss_pred CeEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 362 NHVNLKIHC---PRRPGQLLKAIVALEDLRLTFLHLNITSSETT-VHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 362 ~~a~IkI~C---~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~-Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
+...|-+.. +++||.|.+++..+...|++......-...+. --|.|-+.++ .- .-+.+.++|.++-
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~---~d~~v~~aL~~L~ 254 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA---ITTDIKKVIAILE 254 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC---SCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC---CcHHHHHHHHHHH
Confidence 344555555 78999999999999999999988887655433 3488888888 42 2355777776653
No 49
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=38.85 E-value=97 Score=25.85 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 013752 365 NLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITS 398 (437)
Q Consensus 365 ~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt 398 (437)
.|.|.-+++||.|.+|...|.+.|+.|....+..
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 4666778999999999999999999998776643
No 50
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=36.89 E-value=1.5e+02 Score=24.07 Aligned_cols=49 Identities=6% Similarity=0.054 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHH
Q 013752 374 PGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVH 428 (437)
Q Consensus 374 pGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~ 428 (437)
.-++.++.+.+ ...+.|++++|..+++..+..+.+.+.++ .+++.+++.
T Consensus 35 ~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~-----~~~~~~ai~ 83 (106)
T 3dhx_A 35 APLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGT-----QQDTQAAIA 83 (106)
T ss_dssp CCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESC-----HHHHHHHHH
T ss_pred hhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCC-----HHHHHHHHH
Confidence 34566665555 25577999999999999999999998753 344554443
No 51
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=35.68 E-value=1e+02 Score=30.99 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=47.2
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
.|.+..+-+.|.|... ..+|.+.+++++|.+.|+.|.-.+ +.+.. +.+-+++. ..++..++||+.|.
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~----is~vV~~~----d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIR----ISVLIRED----DLDAAARALHEQFQ 406 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTE----EEEEEEGG----GHHHHHHHHHHHTT
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCe----EEEEEeHH----HHHHHHHHHHHHHh
Confidence 4555677788888765 579999999999999999997443 33433 33334432 36778888988763
No 52
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=34.77 E-value=1.8e+02 Score=29.10 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=33.3
Q ss_pred EEEEcCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEE
Q 013752 357 VIVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLNI 396 (437)
Q Consensus 357 Vsvig~~a~IkI~-C~rRpGlLlkIl~ALEsLgLeVlhAnV 396 (437)
|....+.+.|.|. .+.++|.+.+|++.|.+.++.|.....
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q 298 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 298 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc
Confidence 4555677888887 578899999999999999999887754
No 53
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=34.66 E-value=1.6e+02 Score=30.50 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=47.1
Q ss_pred EEcCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 013752 359 VIHNHVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSS--ETTVHYSFNLKIEEDCKLGSAEEIAAAVHQI 430 (437)
Q Consensus 359 vig~~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~--~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qi 430 (437)
..+....|-+.-+.+||.+.+|...|-+.++.|-+.++... ++..+. .+.+++. ..+++.+.|.++
T Consensus 450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~--~i~vd~~----~~~~~l~~l~~~ 517 (529)
T 1ygy_A 450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATI--LLRLDQD----VPDDVRTAIAAA 517 (529)
T ss_dssp EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEE--EEEESSC----CCHHHHHHHHHH
T ss_pred ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEE--EEEECCC----CCHHHHHHHhcC
Confidence 33445667778889999999999999999999999999764 344443 4445543 245666666653
No 54
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.67 E-value=52 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013752 272 IGGAIDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 272 L~~AI~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
+.+--+||++|+++-.+|+.-++.+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 55677999999999999998777554
No 55
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=32.19 E-value=1.2e+02 Score=31.03 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=49.4
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
+|.+..+-+.|.|.-. ..+|+..+++++|.+.++.|.-.+-.+.+-. +.+-|++. ..++..++||+.|-
T Consensus 367 ~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~----Is~vV~~~----d~~~Av~aLH~~ff 438 (446)
T 3tvi_A 367 SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEIN----VIVGVETV----DFEKAVKSIYNAFN 438 (446)
T ss_dssp EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTE----EEEEEEGG----GHHHHHHHHHHHHC
T ss_pred cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCce----EEEEEcHH----HHHHHHHHHHHHHh
Confidence 4555567778888754 4899999999999999999977765455533 33434443 36778888988764
No 56
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.54 E-value=62 Score=22.66 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013752 265 RGDQASIIGGAIDFVKELEQLLQSLEAQKRM 295 (437)
Q Consensus 265 K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~ 295 (437)
.+..+..|+++-+-|..|+.+++.|+.+|..
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999998864
No 57
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=30.67 E-value=62 Score=27.85 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=43.8
Q ss_pred EEEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 355 IEVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 355 VEVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
-.|++..+-+.|.|... ..+|++.+++++|. ++.|.-.+-.+.+-. +.+-+++. ..++..++||+.|
T Consensus 80 ~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~----is~vv~~~----d~~~a~~~Lh~~f 149 (157)
T 3mah_A 80 GDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYN----VSVLVKAE----DKKKALIALSNKL 149 (157)
T ss_dssp EEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSC----EEEEEEGG----GHHHHHHHHHHHH
T ss_pred CeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCE----EEEEEcHH----HHHHHHHHHHHHH
Confidence 34555667788888765 47999999999999 777666553333322 33334433 3677888898876
Q ss_pred H
Q 013752 432 S 432 (437)
Q Consensus 432 ~ 432 (437)
.
T Consensus 150 ~ 150 (157)
T 3mah_A 150 F 150 (157)
T ss_dssp H
T ss_pred h
Confidence 4
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.91 E-value=1.4e+02 Score=22.39 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHccCCCCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013752 240 ERNRRRQMNDHLNTLRSLMPPAYVQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 240 ER~RR~kmNe~f~~LRsLvP~~~~~K~dKaSIL~~AI~YIk~Lq~~v~~Le~~ke~l 296 (437)
||++|.....+..+-++ + ..-..|+..|+.+++.|+.+...+
T Consensus 1 Ekr~rrrerNR~AA~rc--------R-------~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC--------R-------NRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHH--------H-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH--------H-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777665 1 112466777777777776655443
No 59
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=27.13 E-value=40 Score=25.12 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013752 276 IDFVKELEQLLQSLEAQKRMR 296 (437)
Q Consensus 276 I~YIk~Lq~~v~~Le~~ke~l 296 (437)
-.||..|+++|+.|+..+..+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999988754
No 60
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=26.86 E-value=1.9e+02 Score=26.51 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=37.9
Q ss_pred EEEcCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEE--EEe-eCCeEEEEEEEEE
Q 013752 358 IVIHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLN--ITS-SETTVHYSFNLKI 411 (437)
Q Consensus 358 svig~~a~IkI~-C~rRpGlLlkIl~ALEsLgLeVlhAn--VSt-~~~~Vl~tf~vKV 411 (437)
....+.+.|.|. .+.+||.+.+|+.+|.+.++.|-... ++. .++....+|++.-
T Consensus 30 a~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 30 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred EccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 334567777775 57899999999999999998876553 332 2345556777753
No 61
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=26.18 E-value=1.3e+02 Score=25.35 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=34.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhC---CCeEEEEEEEeeCCeEEEEEEEEE
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDL---RLTFLHLNITSSETTVHYSFNLKI 411 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsL---gLeVlhAnVSt~~~~Vl~tf~vKV 411 (437)
++.+||.-...+++...|+++++.+ +.++ ..+-|..+..+-.++++.+
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v 86 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINA 86 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECC
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEE
Confidence 6888999899999999999999997 6666 4455555544434444433
No 62
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=25.79 E-value=2.3e+02 Score=21.77 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhC----CCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 376 QLLKAIVALEDL----RLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 376 lLlkIl~ALEsL----gLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
.+.+|.+.|.+. -.+|-++.+-..+...+-++++.+.++.....+++|...|.+.+
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l 70 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERAL 70 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHH
Confidence 355666666654 46788888877787777788888876532222455666665544
No 63
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=25.37 E-value=1.3e+02 Score=30.91 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=46.7
Q ss_pred EEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
+|.+..+-+.|.|... .+||.+.+++++|.+.|+.|.-.+..+.+-.+ .+-|++. ..++..++||+.|.
T Consensus 397 ~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~I----s~vV~~~----d~~~Av~aLh~~f~ 468 (473)
T 3c1m_A 397 DVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNI----SFVIDEK----DLLNCVRKLHEKFI 468 (473)
T ss_dssp EEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEE----EEEEEGG----GHHHHHHHHHHHHT
T ss_pred eEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceE----EEEEcHH----HHHHHHHHHHHHHh
Confidence 4555566677888765 47899999999999999999554433434332 3333332 36778888988764
No 64
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=25.22 E-value=1.7e+02 Score=26.75 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=45.9
Q ss_pred EEEEEcCeEEEEEE---cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 356 EVIVIHNHVNLKIH---CPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 356 EVsvig~~a~IkI~---C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
+|....+-+.|.|. -...||+..+++++|-+.|+.|.-.+ +.+- .+++-|++. ..++-.++||+.|.
T Consensus 108 ~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tSEi----~IS~vV~~~----d~~~Av~aLH~~F~ 177 (200)
T 4go7_X 108 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEI----RISVLCRDT----ELDKAVVALHEAFG 177 (200)
T ss_dssp EEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--ECSS----EEEEEEEGG----GHHHHHHHHHHHHT
T ss_pred eEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--ccCC----EEEEEEeHH----HHHHHHHHHHHHhC
Confidence 44555555666655 34679999999999999999887765 3332 334445443 36778899998874
No 65
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=24.74 E-value=1.3e+02 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCcEEEEEEcCeEEEEEEcCCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 013752 352 GAEIEVIVIHNHVNLKIHCPRR------PGQLLKAIVALEDLRLTFLHLNITSS 399 (437)
Q Consensus 352 ~peVEVsvig~~a~IkI~C~rR------pGlLlkIl~ALEsLgLeVlhAnVSt~ 399 (437)
.-+|.|++.++.+.|.+.+... ...+-++-+.|.+-||.+-.++|+..
T Consensus 100 ~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 100 QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 3477778889999999999875 34588999999999999999999754
No 66
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.72 E-value=58 Score=23.95 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 013752 276 IDFVKELEQLLQSLEAQKRMRM 297 (437)
Q Consensus 276 I~YIk~Lq~~v~~Le~~ke~l~ 297 (437)
-.||..|+++++.|+..+..+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999988877654
No 67
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=23.50 E-value=71 Score=33.08 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=46.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSET-TVHYSFNLKIEEDCKLGSAEEIAAAVHQIFS 432 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~-~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~ 432 (437)
...|-+..++++|.|.+++..+...|+++.+...-...+ .--|.|-+.++ .. .-+.+.++|..+-.
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h~---~d~~v~~AL~eL~~ 100 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-KR---TKPVLGSIIKSLRN 100 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-GG---GHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-eC---CCHHHHHHHHHHHh
Confidence 344455557889999999999999999998888755433 34488888887 31 23446666666543
No 68
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.09 E-value=1.9e+02 Score=25.60 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=33.9
Q ss_pred EcCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 013752 360 IHNHVNLKIH-CPRRPGQLLKAIVALEDLRLTFLHLNITSS---ETTVHYSFNLK 410 (437)
Q Consensus 360 ig~~a~IkI~-C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~---~~~Vl~tf~vK 410 (437)
..+.+.|.|. -+.++|.+.+|+..|.+.++.|....-+.. ++..-.+|++.
T Consensus 13 ~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 13 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 4455666664 457899999999999999998866543222 33333455553
No 69
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=22.45 E-value=2.4e+02 Score=20.81 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=38.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 013752 363 HVNLKIHCPRRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIFSYI 434 (437)
Q Consensus 363 ~a~IkI~C~rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil~~i 434 (437)
.++|.|.|.. +....+.++|.++. +|..+...+-+. .+.+++.- .+.+++.+.+.+.+..+
T Consensus 3 ~a~v~v~~~~--~~~~~~~~~l~~~p-eV~~~~~vtG~~----d~l~~v~~----~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 3 SAIVLINTDA--GGEDEVFERLKSMS-EVTEVHVVYGVY----DIVVKVEA----DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp EEEEEEEEST--TCHHHHHHHHTTCT-TEEEEEECSSSC----SEEEEEEC----SSHHHHHHHHHHTGGGS
T ss_pred EEEEEEEEcC--CCHHHHHHHHhCCC-CeEEEEEEeccC----CEEEEEEE----CCHHHHHHHHHHHhcCC
Confidence 4677888864 44678888888876 688887665442 23344432 25677777776555544
No 70
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=22.44 E-value=2.2e+02 Score=30.24 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=50.6
Q ss_pred EEEEEEcCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 013752 355 IEVIVIHNHVNLKIHCP---RRPGQLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEEDCKLGSAEEIAAAVHQIF 431 (437)
Q Consensus 355 VEVsvig~~a~IkI~C~---rRpGlLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee~~~l~SaEEI~~AL~qil 431 (437)
-+|.+..+-+.|.|... .++|++.+++++|.+.++.|...+ +.+- .+.+-+.+. ..++..++||+.|
T Consensus 347 ~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~----~Is~vI~~~----d~~~Av~aLh~~f 416 (600)
T 3l76_A 347 AEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV----KVSCVIDQR----DADRAIAALSNAF 416 (600)
T ss_dssp SEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS----EEEEEEEGG----GHHHHHHHHHHHT
T ss_pred ceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC----EEEEEEcHH----HHHHHHHHHHHhh
Confidence 46667788889999866 589999999999999999997776 2232 334444443 3677888898877
Q ss_pred H
Q 013752 432 S 432 (437)
Q Consensus 432 ~ 432 (437)
.
T Consensus 417 ~ 417 (600)
T 3l76_A 417 G 417 (600)
T ss_dssp T
T ss_pred c
Confidence 4
No 71
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.07 E-value=3.2e+02 Score=21.80 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEEcC
Q 013752 376 QLLKAIVALEDLRLTFLHLNITSSETTVHYSFNLKIEE 413 (437)
Q Consensus 376 lLlkIl~ALEsLgLeVlhAnVSt~~~~Vl~tf~vKVee 413 (437)
++..+.+.+ ...+.|++++|..+++..+..+.+.+..
T Consensus 36 vIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G 72 (98)
T 3ced_A 36 IVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHIPY 72 (98)
T ss_dssp HHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEESC
T ss_pred HHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEEeC
Confidence 455655555 4778999999999999999999999864
No 72
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=21.06 E-value=1e+02 Score=19.90 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=15.2
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 013752 266 GDQASIIGGAIDFVKELEQ 284 (437)
Q Consensus 266 ~dKaSIL~~AI~YIk~Lq~ 284 (437)
+....+|-+|.+|+...+.
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567789999999987665
No 73
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.37 E-value=77 Score=23.73 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHccCCC
Q 013752 238 AVERNRRRQMNDHLNTLRSLMPP 260 (437)
Q Consensus 238 ~~ER~RR~kmNe~f~~LRsLvP~ 260 (437)
.++|-+|...++-+..|+++.|+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 47888999999999999999999
Done!