Query 013753
Match_columns 437
No_of_seqs 133 out of 1361
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.2E-54 2.5E-59 431.5 28.0 392 27-427 60-465 (467)
2 KOG1303 Amino acid transporter 100.0 1.7E-52 3.7E-57 403.9 33.2 406 14-429 25-437 (437)
3 KOG1304 Amino acid transporter 100.0 6.5E-53 1.4E-57 399.4 28.5 389 24-426 44-449 (449)
4 PF01490 Aa_trans: Transmembra 100.0 5E-53 1.1E-57 418.1 -3.5 393 25-423 1-408 (409)
5 PLN03074 auxin influx permease 100.0 1.2E-46 2.5E-51 372.2 27.6 391 25-437 44-462 (473)
6 KOG1305 Amino acid transporter 100.0 6.6E-44 1.4E-48 342.8 25.8 394 23-430 2-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.4E-44 5.2E-49 321.1 3.6 397 22-435 112-523 (524)
8 COG0814 SdaC Amino acid permea 100.0 1E-32 2.2E-37 269.2 32.2 391 22-423 4-412 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 1.1E-26 2.3E-31 225.4 30.2 373 25-416 1-392 (394)
10 PRK09664 tryptophan permease T 100.0 6.9E-26 1.5E-30 217.3 28.5 375 28-419 10-404 (415)
11 TIGR00837 araaP aromatic amino 100.0 3.8E-26 8.2E-31 223.5 25.5 345 32-395 2-360 (381)
12 PRK10483 tryptophan permease; 99.9 1.3E-25 2.8E-30 215.6 28.4 376 23-417 7-401 (414)
13 PRK15132 tyrosine transporter 99.9 3.7E-25 8E-30 213.6 28.5 370 28-419 4-392 (403)
14 PRK13629 threonine/serine tran 99.9 5.1E-23 1.1E-27 197.5 28.2 383 33-420 25-440 (443)
15 TIGR00814 stp serine transport 99.9 1.6E-22 3.4E-27 196.0 21.8 352 33-391 9-376 (397)
16 PRK10655 potE putrescine trans 99.8 1.6E-18 3.4E-23 172.9 30.2 353 23-395 4-377 (438)
17 KOG1287 Amino acid transporter 99.8 5.1E-19 1.1E-23 170.1 22.2 364 21-401 8-393 (479)
18 PRK10435 cadB lysine/cadaverin 99.8 3.5E-18 7.5E-23 170.0 27.0 353 22-395 2-380 (435)
19 PRK10249 phenylalanine transpo 99.8 9.2E-18 2E-22 167.9 26.8 352 21-393 17-394 (458)
20 PRK10644 arginine:agmatin anti 99.8 3E-17 6.6E-22 163.9 29.4 355 22-395 5-379 (445)
21 TIGR00905 2A0302 transporter, 99.8 2.8E-17 6.1E-22 165.2 28.5 356 23-395 5-385 (473)
22 TIGR00906 2A0303 cationic amin 99.8 3.4E-17 7.3E-22 166.7 28.8 360 20-394 23-411 (557)
23 TIGR00909 2A0306 amino acid tr 99.8 1.4E-17 3E-22 165.8 24.8 351 24-394 2-376 (429)
24 PRK11387 S-methylmethionine tr 99.8 3.3E-17 7.2E-22 164.6 27.4 353 22-394 11-392 (471)
25 PRK15049 L-asparagine permease 99.8 2.1E-16 4.6E-21 159.3 30.2 355 22-394 25-406 (499)
26 PRK11021 putative transporter; 99.8 4.9E-16 1.1E-20 153.6 31.3 345 27-395 1-363 (410)
27 TIGR03810 arg_ornith_anti argi 99.8 1.8E-16 3.9E-21 159.1 27.9 354 25-395 1-381 (468)
28 TIGR01773 GABAperm gamma-amino 99.8 1.1E-16 2.5E-21 160.1 25.3 352 21-394 8-388 (452)
29 PRK11357 frlA putative fructos 99.8 1.5E-16 3.3E-21 158.9 26.0 241 21-278 4-251 (445)
30 PRK11049 D-alanine/D-serine/gl 99.8 3.8E-16 8.3E-21 156.8 28.3 358 19-394 14-399 (469)
31 PRK10238 aromatic amino acid t 99.8 3.4E-16 7.3E-21 156.5 27.6 354 20-394 7-386 (456)
32 PRK10836 lysine transporter; P 99.8 4.3E-16 9.3E-21 157.3 27.9 353 21-393 11-398 (489)
33 PRK10746 putative transport pr 99.8 6.6E-16 1.4E-20 154.4 28.9 356 22-395 7-389 (461)
34 COG1113 AnsP Gamma-aminobutyra 99.8 1.1E-16 2.3E-21 151.8 21.3 354 21-394 9-389 (462)
35 TIGR00911 2A0308 L-type amino 99.7 8.3E-16 1.8E-20 155.8 28.0 250 21-282 38-295 (501)
36 TIGR00908 2A0305 ethanolamine 99.7 6.9E-16 1.5E-20 154.1 26.8 353 21-395 3-374 (442)
37 PRK10580 proY putative proline 99.7 1.7E-15 3.7E-20 151.7 28.4 353 21-394 5-385 (457)
38 TIGR00913 2A0310 amino acid pe 99.7 6.5E-15 1.4E-19 148.6 28.9 350 24-393 1-391 (478)
39 TIGR00930 2a30 K-Cl cotranspor 99.7 2E-14 4.3E-19 153.2 33.4 247 22-278 73-336 (953)
40 PRK10197 gamma-aminobutyrate t 99.7 1.5E-14 3.2E-19 144.3 26.4 338 35-393 2-367 (446)
41 PF13520 AA_permease_2: Amino 99.7 7.6E-15 1.6E-19 146.1 23.3 351 27-398 1-379 (426)
42 TIGR00912 2A0309 spore germina 99.7 5.9E-15 1.3E-19 143.4 20.0 286 25-333 1-299 (359)
43 COG0833 LysP Amino acid transp 99.6 1.2E-13 2.5E-18 134.0 25.0 356 22-393 41-427 (541)
44 COG0531 PotE Amino acid transp 99.6 1.9E-13 4.1E-18 137.7 27.3 362 20-394 7-389 (466)
45 TIGR03428 ureacarb_perm permea 99.6 4.9E-12 1.1E-16 127.4 32.5 252 21-282 9-273 (475)
46 KOG1286 Amino acid transporter 99.6 1.2E-13 2.5E-18 138.4 18.6 361 21-393 26-422 (554)
47 TIGR00907 2A0304 amino acid pe 99.6 3.6E-12 7.9E-17 128.7 29.3 364 21-394 8-409 (482)
48 TIGR00910 2A0307_GadC glutamat 99.5 3.7E-12 8.1E-17 128.8 25.0 237 23-276 2-248 (507)
49 PRK15238 inner membrane transp 99.5 2.5E-11 5.3E-16 123.0 29.6 241 23-279 5-268 (496)
50 TIGR03813 put_Glu_GABA_T putat 99.5 1.6E-11 3.5E-16 123.7 25.5 354 25-394 1-385 (474)
51 PF03845 Spore_permease: Spore 99.4 1.4E-11 3E-16 117.7 20.6 284 26-333 1-295 (320)
52 PF00324 AA_permease: Amino ac 99.4 2.8E-12 6E-17 129.5 10.5 344 34-394 4-392 (478)
53 KOG1289 Amino acid transporter 98.9 2.8E-07 6.1E-12 90.0 21.4 256 23-286 46-316 (550)
54 TIGR00800 ncs1 NCS1 nucleoside 98.9 2.1E-06 4.6E-11 85.7 27.3 299 23-332 10-329 (442)
55 KOG3832 Predicted amino acid t 98.9 1.3E-08 2.8E-13 86.1 9.5 208 29-242 14-298 (319)
56 COG3949 Uncharacterized membra 98.8 5.1E-07 1.1E-11 82.7 19.6 226 33-282 9-238 (349)
57 PRK11375 allantoin permease; P 98.7 2.3E-05 4.9E-10 78.8 29.8 342 22-383 22-392 (484)
58 TIGR02119 panF sodium/pantothe 98.7 4.4E-05 9.5E-10 77.0 29.4 157 23-192 38-200 (471)
59 PRK09442 panF sodium/panthothe 98.6 0.00019 4.2E-09 72.5 31.1 159 23-192 39-201 (483)
60 TIGR00813 sss transporter, SSS 98.6 3.6E-05 7.8E-10 76.1 25.3 154 24-189 2-156 (407)
61 PRK12488 acetate permease; Pro 98.5 0.00024 5.2E-09 72.9 30.3 154 23-189 65-220 (549)
62 TIGR02358 thia_cytX probable h 98.4 0.00034 7.3E-09 68.5 27.0 251 55-331 26-277 (386)
63 TIGR02711 symport_actP cation/ 98.4 0.00071 1.5E-08 69.4 29.9 154 23-189 65-220 (549)
64 PRK09395 actP acetate permease 98.4 0.00078 1.7E-08 69.2 30.0 155 23-189 67-222 (551)
65 COG1457 CodB Purine-cytosine p 98.4 0.00035 7.6E-09 68.2 24.9 255 94-376 84-344 (442)
66 TIGR00796 livcs branched-chain 98.3 0.0004 8.6E-09 67.2 25.0 316 34-390 2-346 (378)
67 COG0591 PutP Na+/proline sympo 98.3 0.0013 2.8E-08 66.6 27.7 154 22-186 35-192 (493)
68 TIGR02121 Na_Pro_sym sodium/pr 98.3 0.0012 2.7E-08 66.8 27.8 156 23-188 34-195 (487)
69 TIGR03648 Na_symport_lg probab 98.2 0.002 4.2E-08 66.4 28.4 152 23-186 30-182 (552)
70 PRK10484 putative transporter; 98.2 0.0017 3.8E-08 66.3 26.7 157 23-186 36-198 (523)
71 PRK11017 codB cytosine permeas 98.2 0.0025 5.3E-08 62.9 26.7 173 92-284 72-245 (404)
72 PRK15419 proline:sodium sympor 98.1 0.0031 6.8E-08 64.1 27.8 156 23-188 38-199 (502)
73 PF00474 SSF: Sodium:solute sy 98.1 0.00016 3.4E-09 71.6 16.3 156 24-191 5-162 (406)
74 COG0733 Na+-dependent transpor 97.9 0.0047 1E-07 59.9 23.1 238 28-276 10-268 (439)
75 COG1953 FUI1 Cytosine/uracil/t 97.8 0.03 6.4E-07 55.2 26.9 235 92-333 104-358 (497)
76 COG1914 MntH Mn2+ and Fe2+ tra 97.8 0.025 5.5E-07 55.3 26.3 369 24-420 14-409 (416)
77 PF02133 Transp_cyt_pur: Perme 97.8 0.00047 1E-08 69.0 13.7 242 23-279 5-258 (440)
78 COG4147 DhlC Predicted symport 97.7 0.047 1E-06 53.2 24.6 291 87-390 100-438 (529)
79 PRK00701 manganese transport p 97.4 0.16 3.5E-06 50.6 27.6 35 92-127 95-129 (439)
80 PF01566 Nramp: Natural resist 97.3 0.09 1.9E-06 51.0 22.5 81 92-181 43-125 (358)
81 KOG1288 Amino acid transporter 97.1 0.014 3.1E-07 58.9 14.4 55 219-278 296-350 (945)
82 PF02554 CstA: Carbon starvati 97.0 0.015 3.3E-07 55.1 12.5 105 26-134 51-156 (376)
83 PF05525 Branch_AA_trans: Bran 96.8 0.47 1E-05 46.7 22.1 328 28-391 4-353 (427)
84 PF01235 Na_Ala_symp: Sodium:a 96.8 0.38 8.2E-06 47.1 21.0 84 21-106 13-103 (416)
85 TIGR00835 agcS amino acid carr 96.7 0.017 3.6E-07 56.7 10.9 149 24-185 44-201 (425)
86 KOG2082 K+/Cl- cotransporter K 96.6 0.35 7.6E-06 49.8 19.9 153 29-185 117-285 (1075)
87 KOG2083 Na+/K+ symporter [Inor 96.6 0.0079 1.7E-07 59.8 8.2 236 24-274 27-275 (643)
88 PRK15015 carbon starvation pro 95.7 0.13 2.8E-06 52.4 11.4 103 27-133 83-186 (701)
89 KOG2349 Na+:iodide/myo-inosito 95.5 1.3 2.8E-05 45.2 17.9 240 23-282 43-302 (585)
90 COG4145 PanF Na+/panthothenate 95.5 2.4 5.2E-05 40.4 24.8 244 23-285 37-300 (473)
91 COG1115 AlsT Na+/alanine sympo 95.4 2.9 6.3E-05 41.0 19.1 149 22-184 58-217 (452)
92 PRK15433 branched-chain amino 95.3 3 6.6E-05 41.2 19.4 327 28-391 9-356 (439)
93 PF00209 SNF: Sodium:neurotran 95.2 4.5 9.7E-05 41.5 27.4 108 162-274 192-301 (523)
94 TIGR00796 livcs branched-chain 94.0 0.51 1.1E-05 45.9 10.5 78 92-178 256-333 (378)
95 PF05525 Branch_AA_trans: Bran 93.8 0.6 1.3E-05 46.0 10.6 78 92-178 262-339 (427)
96 TIGR01197 nramp NRAMP (natural 92.1 13 0.00028 36.5 26.0 26 92-118 65-90 (390)
97 COG1114 BrnQ Branched-chain am 91.2 5.7 0.00012 38.6 13.1 79 92-179 264-342 (431)
98 PHA02764 hypothetical protein; 90.2 16 0.00035 34.3 14.6 91 22-117 9-102 (399)
99 COG1966 CstA Carbon starvation 90.2 23 0.00049 35.9 26.1 103 27-133 52-155 (575)
100 PF02028 BCCT: BCCT family tra 87.4 35 0.00076 34.5 24.0 97 93-191 164-261 (485)
101 KOG2466 Uridine permease/thiam 84.9 45 0.00096 33.4 17.2 253 22-293 51-331 (572)
102 PRK15433 branched-chain amino 84.1 6.6 0.00014 38.9 9.0 77 92-178 266-342 (439)
103 PRK09950 putative transporter; 79.6 76 0.0016 32.3 21.5 94 92-186 168-266 (506)
104 COG1292 BetT Choline-glycine b 73.2 1.1E+02 0.0024 31.1 20.7 117 21-142 85-224 (537)
105 COG0814 SdaC Amino acid permea 72.7 1E+02 0.0023 30.5 17.4 149 247-395 215-377 (415)
106 KOG3660 Sodium-neurotransmitte 70.7 1.4E+02 0.0031 31.3 21.5 103 28-140 39-146 (629)
107 PRK09928 choline transport pro 67.6 1.7E+02 0.0037 31.0 18.8 161 22-186 91-273 (679)
108 PF05805 L6_membrane: L6 membr 62.7 52 0.0011 28.6 7.9 65 364-428 43-117 (195)
109 KOG3761 Choline transporter [L 57.6 10 0.00022 35.4 3.1 152 23-186 48-201 (591)
110 KOG1291 Mn2+ and Fe2+ transpor 52.6 2.6E+02 0.0055 28.1 16.7 54 338-391 354-409 (503)
111 COG1114 BrnQ Branched-chain am 51.7 2.5E+02 0.0054 27.7 22.3 120 257-390 228-354 (431)
112 COG3817 Predicted membrane pro 48.7 94 0.002 28.2 7.4 34 399-432 166-199 (313)
113 COG3125 CyoD Heme/copper-type 47.8 1.3E+02 0.0029 23.5 7.2 84 337-421 13-99 (111)
114 PF12794 MscS_TM: Mechanosensi 42.8 1.8E+02 0.004 27.9 9.3 40 254-293 45-84 (340)
115 KOG2466 Uridine permease/thiam 38.2 45 0.00097 33.3 4.2 168 102-274 339-513 (572)
116 KOG1289 Amino acid transporter 37.7 4.7E+02 0.01 26.9 11.9 46 92-138 326-371 (550)
117 KOG1305 Amino acid transporter 36.7 2.7E+02 0.0059 27.6 9.5 197 217-420 198-406 (411)
118 PF04835 Pox_A9: A9 protein co 35.5 69 0.0015 21.2 3.4 30 257-286 23-52 (54)
119 TIGR00842 bcct choline/carniti 35.4 4.8E+02 0.01 26.3 21.7 162 21-186 34-219 (453)
120 KOG4812 Golgi-associated prote 33.8 1E+02 0.0022 27.6 5.3 31 400-430 222-254 (262)
121 PF05767 Pox_A14: Poxvirus vir 33.6 75 0.0016 23.7 3.7 56 222-284 16-71 (92)
122 PRK10263 DNA translocase FtsK; 30.4 9.1E+02 0.02 28.0 13.7 23 259-281 25-47 (1355)
123 PRK11281 hypothetical protein; 28.6 5.5E+02 0.012 29.3 11.0 37 247-283 534-570 (1113)
124 PRK13183 psbN photosystem II r 28.3 60 0.0013 20.8 2.2 28 257-284 6-33 (46)
125 PRK03356 L-carnitine/gamma-but 28.0 6.7E+02 0.014 25.7 22.5 159 27-186 86-269 (504)
126 KOG3659 Sodium-neurotransmitte 27.7 7.2E+02 0.016 25.9 23.8 88 27-119 82-174 (629)
127 PF07695 7TMR-DISM_7TM: 7TM di 26.1 3.4E+02 0.0073 23.1 7.6 11 340-350 95-105 (205)
128 CHL00020 psbN photosystem II p 26.0 54 0.0012 20.7 1.7 28 257-284 3-30 (43)
129 PF02028 BCCT: BCCT family tra 24.8 2.8E+02 0.0062 28.1 7.5 66 121-186 401-470 (485)
130 PF02468 PsbN: Photosystem II 24.5 80 0.0017 20.0 2.2 27 258-284 4-30 (43)
131 TIGR02901 QoxD cytochrome aa3 23.2 3.4E+02 0.0073 20.6 7.6 19 340-358 5-23 (94)
132 PF08019 DUF1705: Domain of un 23.1 3.4E+02 0.0073 22.6 6.6 18 378-395 73-90 (156)
133 PRK10929 putative mechanosensi 23.0 9.3E+02 0.02 27.5 11.5 32 251-282 516-547 (1109)
134 PF01235 Na_Ala_symp: Sodium:a 22.5 4.1E+02 0.009 26.3 7.9 83 100-190 302-384 (416)
135 PRK14856 nhaA pH-dependent sod 22.3 6.4E+02 0.014 25.2 9.1 52 219-274 72-125 (438)
136 PRK10582 cytochrome o ubiquino 21.7 4E+02 0.0086 20.8 8.4 83 338-421 12-97 (109)
137 PHA02680 ORF090 IMV phosphoryl 21.2 2.2E+02 0.0049 21.1 4.3 54 223-282 17-70 (91)
138 PF07086 DUF1352: Protein of u 21.1 3.1E+02 0.0068 23.7 6.0 27 405-431 105-131 (186)
139 PRK11383 hypothetical protein; 20.4 4.9E+02 0.011 21.4 7.1 58 366-423 36-98 (145)
140 TIGR02230 ATPase_gene1 F0F1-AT 20.2 2E+02 0.0042 22.1 4.1 22 402-423 75-96 (100)
141 PHA02898 virion envelope prote 20.0 1.9E+02 0.004 21.5 3.7 58 222-286 16-73 (92)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.2e-54 Score=431.46 Aligned_cols=392 Identities=18% Similarity=0.212 Sum_probs=323.0
Q ss_pred CceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCcc
Q 013753 27 AKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLG 106 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g 106 (437)
.|..++++|++|+++|+|+|++|++|+++||++|++++++++.++.|+.+++.+++++. +. ++|+|++++++|| +|
T Consensus 60 gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-~~--~sY~~la~~~~G~-~g 135 (467)
T PTZ00206 60 GGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-NI--RTYEGVARVLLGP-WG 135 (467)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC--CCHHHHHHHHhCH-HH
Confidence 56688999999999999999999999999999999999999999999999999987753 23 3999999999997 68
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCC---C-cccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 013753 107 PWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC---K-PLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 182 (437)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~---~-~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (437)
++++++.+.+.++|.|++|.++.+|.++.+++...... . ..++..+.++..++++|+++.|++++++++|.+++.+
T Consensus 136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence 89999999999999999999999999998886422110 0 1123344456677899999999999999999999986
Q ss_pred HHHHHHHHHHhhhccccccCcc---cccc---CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchh
Q 013753 183 SLSYSTIAWAGSLSHGRIENVS---YAYK---HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (437)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (437)
++...+.+++....++.+++.+ .... +....+...+.+.++++++|||.||.+++++++| ||||+.+++.
T Consensus 216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~----M~~~t~~~~~ 291 (467)
T PTZ00206 216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMD----MTNRSVGKFV 291 (467)
T ss_pred HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHh----hcccchhHHH
Confidence 6655555555555444333211 1110 0011122346889999999999999999999999 8998888888
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccC-CChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhcCC
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALK-RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~ 335 (437)
++...++.+++++|.++|++||+.||++++++++.|++ .++....++++++.+.++.+||++.+|+|+.+++.+..+.+
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~ 371 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR 371 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999994 56778888899999999999999999999999998754432
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhc---CCCCCCHHHHHHHHHHHHHH
Q 013753 336 FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIK---KPKRFSPKWIINWASIFIGV 412 (437)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~---~~~~~~~~~~~~~~~~~~g~ 412 (437)
+.+++++...+..+.+.++++|+.+|+++.+++++||++++.++|++|+++|++.. +++...++++.++.++++|+
T Consensus 372 -~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv 450 (467)
T PTZ00206 372 -KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGV 450 (467)
T ss_pred -cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHh
Confidence 33456666667677778899999999999999999999999999999999999842 22323345577999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013753 413 FIMLASTIGGFRNIV 427 (437)
Q Consensus 413 ~~~v~gt~~~i~~~~ 427 (437)
+..+.|||+++++.+
T Consensus 451 ~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 451 IAIVFGTGATIWGVT 465 (467)
T ss_pred heEEecchhHhhHHh
Confidence 999999999999876
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-52 Score=403.93 Aligned_cols=406 Identities=42% Similarity=0.772 Sum_probs=355.9
Q ss_pred cccccccCccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhcc---CCccc
Q 013753 14 SNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECV---PGVRF 90 (437)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~---~~~~~ 90 (437)
++|++++..++|+.||+++.++.++.++|.|+|++|+|+++.||..|++++++.++++.||..+|.+|.+.+ +++|+
T Consensus 25 ~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~ 104 (437)
T KOG1303|consen 25 DVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRR 104 (437)
T ss_pred ccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccC
Confidence 344455666788899999999999999999999999999999999999999999999999999998876543 45566
Q ss_pred CCHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcc
Q 013753 91 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 170 (437)
Q Consensus 91 ~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 170 (437)
+.|.|+++++||++ +++++.+++.+.+++.|+.|.+..+|++..+.+....++...+.+.|+++++++.+|++++||++
T Consensus 105 ~~Y~dl~~~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH 183 (437)
T ss_pred CChHHHHHHHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc
Confidence 78999999999986 59999999999999999999999999999999987644323446899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccccC-ccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCC
Q 013753 171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN-VSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEK 249 (437)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~ 249 (437)
.+++.|..+.+..+.+..+.+..+..++.... .+...... +.....+++++++.|+|.||..+|+++++ ||+
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~---~~~~~~f~a~g~iaFaf~gH~v~peIq~t----Mk~ 256 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL---GTIPTVFTALGIIAFAYGGHAVLPEIQHT----MKS 256 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC---CCCcchhhhhhheeeeecCCeeeeehHhh----cCC
Confidence 99999999999888888887877776664432 11221111 11111189999999999999999999999 899
Q ss_pred CcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 013753 250 PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (437)
Q Consensus 250 p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 329 (437)
|.+ ++|++..+..+++.+|...++.||++|||+++++++.|+.++.|....+++++.++++.++.....|..+.+|+.
T Consensus 257 p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~ 334 (437)
T KOG1303|consen 257 PPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKL 334 (437)
T ss_pred chh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence 998 559999999999999999999999999999999999999766899999999999999999999999999999999
Q ss_pred hhhcCCC--CCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHHHHHHHH
Q 013753 330 MIKRMNF--PPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWAS 407 (437)
Q Consensus 330 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~ 407 (437)
...+.+. ++....|.+.|...++.++++|+.+|+|+++.+++|+.....+.+++|+++|++.+|.++...+++.+|..
T Consensus 335 ~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~ 414 (437)
T KOG1303|consen 335 IGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVI 414 (437)
T ss_pred hccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 8866441 23456899999999999999999999999999999999999999999999999999888888888888888
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHh
Q 013753 408 -IFIGVFIMLASTIGGFRNIVAD 429 (437)
Q Consensus 408 -~~~g~~~~v~gt~~~i~~~~~~ 429 (437)
.++++++++....+++++++.+
T Consensus 415 ~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 415 ILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhC
Confidence 7999999999999999988754
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-53 Score=399.36 Aligned_cols=389 Identities=21% Similarity=0.255 Sum_probs=340.8
Q ss_pred ccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhcc---CCcccCCHHHHHH--
Q 013753 24 TRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGR-- 98 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~---~~~~~~~y~~~~~-- 98 (437)
++..|..++..|+.+.++|+|+|++|+||+++|++.|.+...+++.++.|+++.+++|.... .+...-+|.+.++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999975421 1111236666655
Q ss_pred --------HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcc
Q 013753 99 --------HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 170 (437)
Q Consensus 99 --------~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 170 (437)
+.+|| ++|.+++..+.+.++|.|+.|.+++++++.++.+... ....+.+.++.+.....+++++.||++
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 44565 6788999999999999999999999999999998422 236788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
.++.+|.++.++.++.+.++.++.+.... +. ++.+...++.++...+|+.+|||+|+..+.|+.++ ||+|
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~----~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~----Mk~P 270 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLP--PT----SDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS----MKKP 270 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccC--Cc----cccccccchhhhHHHHHHHHHHhccceEEEehhhc----ccCh
Confidence 99999999999888887777776654432 11 11233456899999999999999999999999999 9999
Q ss_pred cccchh-hhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 013753 251 SKILMW-KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (437)
Q Consensus 251 ~~~~~~-~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 329 (437)
+++.-+ +++..++.+++++|..+|++||+.|||++++.++.|+|+ +++...+++++++.++.+||++++|..+.+++.
T Consensus 271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG 349 (449)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence 975422 888999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred hhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCC---CCCHHHHHHHH
Q 013753 330 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK---RFSPKWIINWA 406 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~---~~~~~~~~~~~ 406 (437)
++++.+.+++++..+..|..+++++..+|..+|+++.+++++|+++++.+++++|++++++.+.++ +.+|+++.+..
T Consensus 350 i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~ 429 (449)
T KOG1304|consen 350 IRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV 429 (449)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence 887776666788899999999999999999999999999999999999999999999999987654 34688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013753 407 SIFIGVFIMLASTIGGFRNI 426 (437)
Q Consensus 407 ~~~~g~~~~v~gt~~~i~~~ 426 (437)
++++|++.++.|||+++.++
T Consensus 430 l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 430 LIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999864
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5e-53 Score=418.05 Aligned_cols=393 Identities=30% Similarity=0.491 Sum_probs=337.0
Q ss_pred cCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccC-CcccCCHHHHHHHHhCC
Q 013753 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVP-GVRFDRYIDLGRHAFGP 103 (437)
Q Consensus 25 ~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~-~~~~~~y~~~~~~~~G~ 103 (437)
+|.|+++++++++|+++|+|+|++|+++++.|+++|++++++++.++.++.+++.++++..+ +++.++|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 33456999999999998
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHH
Q 013753 104 KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMS 183 (437)
Q Consensus 104 ~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 183 (437)
+ ++++++++..+.+++.+++|.+..+|.+.++++...+. ...++..+.++..++++|+++.|+++++++.+.++.++.
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc-ccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 5 78999999999999999999999999999998875432 245677888888999999999999999999999999966
Q ss_pred HHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcc-cchhhhhHHH
Q 013753 184 LSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK-ILMWKGALGA 262 (437)
Q Consensus 184 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~-~~~~~~~~~~ 262 (437)
+..+.+.+.........++.+..........++.+++.+++++.|+|.||+++|++.+| ||+|+| +++.++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----m~~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSE----MKDPSKFKKMKKVLSIS 234 (409)
T ss_pred ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeee----ccCCccccccceeeeeh
Confidence 55322222222222211111211111123467789999999999999999999999999 899998 6678999999
Q ss_pred HHHHHHHHHhHHHHHhhhcCCCCchhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc--------C
Q 013753 263 YFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------M 334 (437)
Q Consensus 263 ~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~--------~ 334 (437)
..+++++|..+|+.||++||+++++|++.|++++++...++++++.++++.+||++.+|.++.+++...++ .
T Consensus 235 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~ 314 (409)
T PF01490_consen 235 MIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK 314 (409)
T ss_pred hhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc
Confidence 99999999999999999999999999999999988899999999999999999999999999999998753 2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHH-----HHHHHHHH
Q 013753 335 NFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIF 409 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~-----~~~~~~~~ 409 (437)
+.+.++++|...|+.+++.+.++|+.+||++++++++|++++..++|++|+++|+|.+++++.+.++ ...+..+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (409)
T PF01490_consen 315 NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIV 394 (409)
T ss_pred cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEE
Confidence 3345568899999999999999999999999999999999999999999999999998876543322 44688899
Q ss_pred HHHHHHHHHHHHHH
Q 013753 410 IGVFIMLASTIGGF 423 (437)
Q Consensus 410 ~g~~~~v~gt~~~i 423 (437)
+|++.++.|+|+++
T Consensus 395 ~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 395 FGVVLMVFGTYQSI 408 (409)
T ss_pred EeeehhHHhHHHHc
Confidence 99999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.2e-46 Score=372.21 Aligned_cols=391 Identities=20% Similarity=0.305 Sum_probs=316.7
Q ss_pred cCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchh----ccCCccc------CCHH
Q 013753 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHE----CVPGVRF------DRYI 94 (437)
Q Consensus 25 ~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~----~~~~~~~------~~y~ 94 (437)
++.+..++.+++++..+|.|+|+||++|++.||++|++.+++.++++.||.+++.++.. |.+.++. .+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 34566777788999999999999999999999999999999999999999999987532 2222110 2678
Q ss_pred HHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhH
Q 013753 95 DLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSS 174 (437)
Q Consensus 95 ~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 174 (437)
|+++..+||+ ++.+..+...+.+++.|+.|.+..++.+.++- ...+.+.|++++.++.+|++++|+++++++
T Consensus 124 e~~~~~~G~~-~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~ 195 (473)
T PLN03074 124 EVLDGLLGPY-WKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACCATTVFIPSFHNYRI 195 (473)
T ss_pred HHHHHhcChh-HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHHHHHHHccCHHHHHH
Confidence 8999999985 55678888889999999999997776555431 246778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc
Q 013753 175 VSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (437)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (437)
+|.++..+++...+.+.+....+++.++.+.. .+.++..++.++++++|+|+||..+|++++| ||||+|++
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~----M~~P~~F~ 266 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-----GPTKLVLYFTGATNILYTFGGHAVTVEIMHA----MWKPQKFK 266 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CchhHHHHHHHHHHHHHHhcccccHHHHHHh----ccChhccc
Confidence 99999886554433333334434433322211 2345777888888999999999999999999 99999876
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCc--hhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhh
Q 013753 255 MWKGALGAYFVNAICYFPVALIGYWAFGQDVD--DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK 332 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~ 332 (437)
+....+...++.+|+.+++.||+.|||++. ++.+.|+|++.+ ..+++++++++.+.+||+++.|..+.+|+....
T Consensus 267 --~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~ 343 (473)
T PLN03074 267 --YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGV 343 (473)
T ss_pred --chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 888899999999999999999999999865 467878886554 578899999999999999999999999887654
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCC-------------CCCH
Q 013753 333 RMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK-------------RFSP 399 (437)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~-------------~~~~ 399 (437)
. .++....|...|+.+++++.++|..+|+|+.+++++||++++.+++++|+++|++.++++ ..+|
T Consensus 344 ~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 421 (473)
T PLN03074 344 H--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSW 421 (473)
T ss_pred c--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCcc
Confidence 3 234467889999999999999999999999999999999999999999999999865432 1122
Q ss_pred --HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCCC
Q 013753 400 --KWIINWASIFI-GVFIMLASTIGGFRNIVADASTYSFYT 437 (437)
Q Consensus 400 --~~~~~~~~~~~-g~~~~v~gt~~~i~~~~~~~~~~~~~~ 437 (437)
..+.++.++++ +++..+.|+|.++++++++.++++.|.
T Consensus 422 ~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 422 TGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred ceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 23778888875 555578999999999999999988763
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-44 Score=342.84 Aligned_cols=394 Identities=20% Similarity=0.302 Sum_probs=332.2
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
.+++.+...+++|+.|+++|+|++++|++|++.|.++|++++.+++.++.++.+++.+++++.++ + +|++++++.+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R--TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C--CHHHHHHHHcC
Confidence 35667899999999999999999999999999999999999999999999999999999886544 3 99999999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCC----cccchh-hHHHHHHHHHHhhcCCCcchhhHHHH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK----PLRQTF-WILIFGSLHFFLSQLPDINSVSSVSL 177 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~----~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~ 177 (437)
+ .|+....+.......+ |++|.+.++|.+..+......+++ ..+++. +.+....++.|+++.|+++++++.|.
T Consensus 79 ~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 K-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred C-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7 6766666665555555 699999999999977766543222 123333 46778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-ccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchh
Q 013753 178 AAAVMSLSYSTIAWAGSLSHGR-IENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (437)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (437)
++...++....++++..+..+. .....+. .+....+++.+.++++++|+|.||+|..++++| ||||+++++.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E----l~~~s~~~i~ 229 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE----LKDRSVKKIQ 229 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeee----eeCchHHHHH
Confidence 9999877776666666554332 1111111 111223378999999999999999999999999 8999999999
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccCCChHH------HHHHHHHHHHHHHHhcccccccHHHHHHHHh
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL------IAAANLMVVVHVIGSYQVFAMPVFHLLEGMM 330 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~ 330 (437)
++...+...+..+|...|..||+.|||.+.+|++.+++..+.. ...++..+.++++.++|+..+|+|..+++..
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~ 309 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELL 309 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 9999999999999999999999999999999999999865333 4789999999999999999999999998887
Q ss_pred hhcCC--CCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHHHHHHHHH
Q 013753 331 IKRMN--FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASI 408 (437)
Q Consensus 331 ~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~~ 408 (437)
.+.+. ++.++.++.+++..++..+.+.|+..|+++.+++++||++++.++|++|+++|++.+|+ +.+++...+...
T Consensus 310 ~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~ 387 (411)
T KOG1305|consen 310 FPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFL 387 (411)
T ss_pred cccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHH
Confidence 76543 24567888889999999999999999999999999999999999999999999999887 445567789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 013753 409 FIGVFIMLASTIGGFRNIVADA 430 (437)
Q Consensus 409 ~~g~~~~v~gt~~~i~~~~~~~ 430 (437)
.+++...+.|+...+.++..+.
T Consensus 388 ~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 388 ILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998887653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-44 Score=321.11 Aligned_cols=397 Identities=19% Similarity=0.237 Sum_probs=343.8
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCc-----ccCCHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGV-----RFDRYIDL 96 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~-----~~~~y~~~ 96 (437)
+.+.+++.+|+..|..|++-|.=+++||+|..+.|++ ++..++.++.++.||..++.+|.-....+ .+++|.++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 3457789999999999999999999999999999985 99999999999999999999986422211 13699999
Q ss_pred HHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHH
Q 013753 97 GRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 97 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (437)
+..+++|+.|-..+.+.+++..+.+|+.|.++.+|.+..-++.. +.+.+.|+++..+.++|.+++|+++..+.+|
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lS 265 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRLS 265 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHHH
Confidence 99999999997789999999999999999999999998777653 5678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchh
Q 013753 177 LAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (437)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (437)
.++++.-++.-++++.|+...- .|+.+.......+..+++.++++++|+|..|.-+|.+..+ |+||++++
T Consensus 266 f~ct~sH~viN~i~v~YCLs~~----~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN----M~~ps~Fn-- 335 (524)
T KOG4303|consen 266 FFCTISHLVINLIMVLYCLSFV----SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN----MKNPSQFN-- 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc----cCChhHhe--
Confidence 9999987777777777776442 2344433333457788889999999999999999999998 99999988
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhcC-C
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~-~ 335 (437)
..+-++-+...++-..+|+.||++|+++++..|.+|+|+. -...++++++++..+.|||+-++...+.+|+.+.... +
T Consensus 336 ~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~ 414 (524)
T KOG4303|consen 336 VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQ 414 (524)
T ss_pred eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCC
Confidence 7788999999999999999999999999999999999874 4667899999999999999999999999998765442 2
Q ss_pred CCC-------c--hhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHHHHHHH
Q 013753 336 FPP-------G--AAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWA 406 (437)
Q Consensus 336 ~~~-------~--~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~ 406 (437)
.+. . +-+....|.++++.++++|+.+|.+..+.+++|+++++.++|+.|+++|++++.+.....++..+..
T Consensus 415 t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~ 494 (524)
T KOG4303|consen 415 TPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQG 494 (524)
T ss_pred CCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhhee
Confidence 211 1 2233447899999999999999999999999999999999999999999999888777777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 013753 407 SIFIGVFIMLASTIGGFRNIVADASTYSF 435 (437)
Q Consensus 407 ~~~~g~~~~v~gt~~~i~~~~~~~~~~~~ 435 (437)
++.+|..+.+.|.|.+..+++++.++...
T Consensus 495 Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 495 IIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred EEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 99999999999999999999999987653
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-32 Score=269.22 Aligned_cols=391 Identities=19% Similarity=0.236 Sum_probs=303.1
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
..+++.+..+.++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.|+.+ .++.+++++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHh
Confidence 35566788899999999999999999999999999999999999999999999999999998776642 48999999999
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
||+ ++++.++.+.+.+++.+.+|.+..++.+++.+++...... .++....+++..++.+++..++...++..+.+...
T Consensus 83 G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~-~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 83 GKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP-LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC-cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 985 6799999999999999999999999999999997553321 56778888888888999999999999999998888
Q ss_pred HHHHHHHHHHHhhhccccccCccccccCCCc-hhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhH
Q 013753 182 MSLSYSTIAWAGSLSHGRIENVSYAYKHTSS-ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL 260 (437)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~ 260 (437)
.+... ++...+..-+.+..... .. +.. +..+..+..++|+++|||+||+++|++.+| ||++++++.+|+..
T Consensus 161 ~v~~~-~~l~~~~~~~~~~~~l~-~~--~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~----~~~~~~~~~~k~~~ 232 (415)
T COG0814 161 KVIYL-VLLVVYLIPHWNPANLF-AL--PSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNY----MRKNSKKAVRKAIL 232 (415)
T ss_pred HHHHH-HHHHHHHhcccCHHHHh-cc--cccchhhHHHHHHHhhHHHhhhhCCccchHHHHH----hccchhHHHHHHHH
Confidence 54444 33333332222111111 10 111 467888999999999999999999999999 78888755889999
Q ss_pred HHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccCCCh-------------HHHHHHHHHHHHHHHHhcccccccHHHHHH
Q 013753 261 GAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPG-------------WLIAAANLMVVVHVIGSYQVFAMPVFHLLE 327 (437)
Q Consensus 261 ~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~-------------~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~ 327 (437)
++.....++|..+++.+|..+|+.+.++++.+.++++ ......+++..+++..|+--+....+|..+
T Consensus 233 ~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~ 312 (415)
T COG0814 233 IGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLA 312 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhh
Confidence 9999999999999999999999999999999986542 234455556667777777777777778888
Q ss_pred HHhhhcCCCC--Cch--hhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHHHH
Q 013753 328 GMMIKRMNFP--PGA--AVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWII 403 (437)
Q Consensus 328 ~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~ 403 (437)
+.++++++++ +.. .............+...+...+..+.+.+.+|+.....+.++.|...+.|....+..+.++..
T Consensus 313 ~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~ 392 (415)
T COG0814 313 DLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLL 392 (415)
T ss_pred HHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchh
Confidence 8777522211 111 122223344456666777777888888888888888888888888887776544433322246
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013753 404 NWASIFIGVFIMLASTIGGF 423 (437)
Q Consensus 404 ~~~~~~~g~~~~v~gt~~~i 423 (437)
.++++.+|+..+....+...
T Consensus 393 ~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 393 LLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78888889888887776543
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=1.1e-26 Score=225.44 Aligned_cols=373 Identities=17% Similarity=0.224 Sum_probs=276.0
Q ss_pred cCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCC
Q 013753 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (437)
Q Consensus 25 ~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~ 104 (437)
|+.+.+++++.+.++.+|+|+|+||.+.+..|..++.+.+++.+..++++.+++.|...+.++.. ++.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~--~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGS--SLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhChH
Confidence 34577889999999999999999999999999999999999999999999999999877665543 9999999999985
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 013753 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL 184 (437)
Q Consensus 105 ~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (437)
|+++..+.+.+..++.+++|..-.++.+++.++...+. +.+++....++.++...+... +-+...+.+..-+..++
T Consensus 79 -g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 -GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999876531 233344334443333333333 34456666666655444
Q ss_pred HHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHH
Q 013753 185 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYF 264 (437)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~ 264 (437)
........+.+.+-+.+.... ......++.....++|+.++||..|+.+|++.+. +++.+| +.+|++..+..
T Consensus 155 ~~~~~l~~~~~p~~~~~~L~~---~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~----~~~d~~-k~~~ai~~Gs~ 226 (394)
T PF03222_consen 155 ISFIILVVYLIPHWNPSNLLD---APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKY----LGGDPK-KIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHhhhcCHHHhhc---cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHH----hCccHH-HHHHHHHHHHH
Confidence 444444444332222221111 1223567888999999999999999999999998 443333 56799999999
Q ss_pred HHHHHHHhHHHHHhhhc-----------CCCCc--hhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 013753 265 VNAICYFPVALIGYWAF-----------GQDVD--DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (437)
Q Consensus 265 ~~~~~Y~~~g~~gy~~f-----------g~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~ 331 (437)
+..++|++.-......- +++.. ...+.+...+++...+..++-.+++.+||--.....+|.+.+.++
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k 306 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFK 306 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999997654443311 11111 133444455577788889999999999999999999999999987
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHhhccc-hhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCH-----HHHHHH
Q 013753 332 KRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP-----KWIINW 405 (437)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~-~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~-----~~~~~~ 405 (437)
.+++ ...|.....+...+++++|...|+ |...+++.| ...+++..++|+++.+|.|++++.+. .+....
T Consensus 307 ~~~~----~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~ 381 (394)
T PF03222_consen 307 LKNN----SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLL 381 (394)
T ss_pred CCcc----ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHH
Confidence 6322 234455566778889999999996 889999999 88899999999999999987665432 234455
Q ss_pred HHHHHHHHHHH
Q 013753 406 ASIFIGVFIML 416 (437)
Q Consensus 406 ~~~~~g~~~~v 416 (437)
.++.+|++..+
T Consensus 382 ~~~~~~i~iii 392 (394)
T PF03222_consen 382 LVIIFGILIII 392 (394)
T ss_pred HHHHHHHHHHH
Confidence 55566655543
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=6.9e-26 Score=217.26 Aligned_cols=375 Identities=14% Similarity=0.132 Sum_probs=269.4
Q ss_pred ceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccC
Q 013753 28 KWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGP 107 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~ 107 (437)
+.+.+++.+.++++|+|+|++|.+.++.|+.++.++++++|..+.+|..++.|...+.++. .++..++|+.+|| .|+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g--~~l~tma~~~LG~-~g~ 86 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVG--SSFNTITKDLIGN-TWN 86 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcCh-HHH
Confidence 7778999999999999999999999999999999999999999999999999998776544 3899999999998 589
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHH
Q 013753 108 WIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYS 187 (437)
Q Consensus 108 ~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 187 (437)
++.+++..+..++.+++|+.-.++.+++.++...+. +.+++...+++.++.-.+... ..+...+.+.+-...+++..
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~--~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ii~f 163 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNLGY--HANPRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKIISF 163 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753221 233343344444444454444 34666666666655444433
Q ss_pred HHHHHhhhccccccCccccccCCC-chhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHH
Q 013753 188 TIAWAGSLSHGRIENVSYAYKHTS-SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVN 266 (437)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~ 266 (437)
+..+.....+-+.+...... ... ....+..+..++|++++||..|+++|++.+. +++..| +.+|++..+..+.
T Consensus 164 ~~~~~~l~~~i~~~~L~~~~-~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y----~~~d~~-~~~kaIl~Gs~Ip 237 (415)
T PRK09664 164 VIVFGSFFFQVDYSILRDAT-STTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC----YGKRKD-KLIKSVVFGSLLA 237 (415)
T ss_pred HHHHHHHhhcccHHHHhcCc-cccccchHHHHHHHHHHHHHHhhhCCCcchHHHHH----hCccHH-HHHHHHHHHHHHH
Confidence 33233222121111111000 000 0112456888999999999999999999998 443322 4569999999999
Q ss_pred HHHHHhHHHH--H---------hhhcCCCCch--hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc
Q 013753 267 AICYFPVALI--G---------YWAFGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (437)
Q Consensus 267 ~~~Y~~~g~~--g---------y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 333 (437)
.++|++.-.+ | ....|++.+. ..+.+-.++.+...+..++..+++.+||--+.....|.+.+.++.+
T Consensus 238 LviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~ 317 (415)
T PRK09664 238 LVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID 317 (415)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999754332 2 1223333333 1111123446777788889999999999999999999999998766
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhhccc-hhHHhhhhcccccchhHhhhhhhhhhhhcCC-CCCC----HHHHHHHHH
Q 013753 334 MNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFS----PKWIINWAS 407 (437)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~la~~~p~-~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~-~~~~----~~~~~~~~~ 407 (437)
++. ..|.....+.++++++++...|+ |-..+++.|.. .+++.-++|+++.+|.||+ +... ..+..-+..
T Consensus 318 ~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~ 392 (415)
T PRK09664 318 NSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIV 392 (415)
T ss_pred Ccc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHH
Confidence 432 23555566788999999999997 99999999986 6799999999999999976 2211 224555666
Q ss_pred HHHHHHHHHHHH
Q 013753 408 IFIGVFIMLAST 419 (437)
Q Consensus 408 ~~~g~~~~v~gt 419 (437)
+.+|++..+.-.
T Consensus 393 ~~~g~~ii~~~~ 404 (415)
T PRK09664 393 ILFGITVILCWF 404 (415)
T ss_pred HHHHHHHHHHHH
Confidence 666766665433
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=3.8e-26 Score=223.54 Aligned_cols=345 Identities=16% Similarity=0.145 Sum_probs=260.8
Q ss_pred hhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcchh
Q 013753 32 STFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVL 111 (437)
Q Consensus 32 ~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~ 111 (437)
+++.++++++|+|++.+|..+++.|..++++.+++.+.++.++...+.|...+.|+.+ ++.+++++++||+ +.++..
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~--~~~~~~~~~~G~~-~g~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGA--SFNTIAKDLLGKT-GNIIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCHH-HHHHHH
Confidence 4567889999999999999999999999999999999999999999999988887654 9999999999985 557889
Q ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 013753 112 PQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAW 191 (437)
Q Consensus 112 ~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 191 (437)
+..++.++..+.+|....++++..+++...+. ..++....++..+++.+ ...++.+...+++.+.+...+...++.+
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764322 12333333333333333 3444778888888888876666544444
Q ss_pred HhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHH
Q 013753 192 AGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYF 271 (437)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~ 271 (437)
+....+.+.++..+. ..++.++.++..+++..+++|.+|.+++++.+| ++|++ ++++|++..+..+++++|+
T Consensus 156 i~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~----~~~~~-k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDLLLDV---ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKY----YDGNV-KKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHHHhcC---ccccccHHHHHHHHHHHHHHHHcccccHHHHHH----hccCH-HHHHHHHHHHHHHHHHHHH
Confidence 443333222211110 011235678889999999999999899999998 67664 4889999999999999999
Q ss_pred hHHHHHhhhcCCCCchh-------------hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhcCCCCC
Q 013753 272 PVALIGYWAFGQDVDDN-------------VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPP 338 (437)
Q Consensus 272 ~~g~~gy~~fg~~~~~~-------------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 338 (437)
++........+.+.-.+ ...+.-++.+...++.++..+++.+|+.....+.+|.+.+.+++++++
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-- 305 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-- 305 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--
Confidence 98877776665332211 112212234566778888889999999999999999988888775332
Q ss_pred chhhHHHHHHHHHHHHHHHHhhccchh-HHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 339 GAAVRVVARSAYVAFTLFVGVTFPFFG-DLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~la~~~p~~~-~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
.+|.....+..+++.++|.+.|+.. ..++++| +....+.+++|++++++.||++
T Consensus 306 --~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 306 --KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred --CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 1244566777789999999999754 9999999 7788999999999999988753
No 12
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=1.3e-25 Score=215.63 Aligned_cols=376 Identities=15% Similarity=0.066 Sum_probs=273.9
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
++++.+.+.+++.+.++++|+|+|++|.+.++.|+.++.++++++|..+.+|..++.|...+.++. .++..++|+.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g--~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG--SSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcC
Confidence 456688999999999999999999999999999999999999999999999999999987766543 399999999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 182 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (437)
| .|+.+.+++..+..++.+++|+.-.++.+++.++. .+. +.+++.-.+++.++.-.+... ..+...+++.+-...
T Consensus 85 ~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~--~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~ 159 (414)
T PRK10483 85 K-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSL--NVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGA 159 (414)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCC--CCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 8 58899999999999999999999999999999876 221 234444444555444444444 456666676666654
Q ss_pred HHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHH
Q 013753 183 SLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGA 262 (437)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~ 262 (437)
+++..+..+.....+-+.+..... .......+.....++|++++||..|+++|++.+. +++..| +.+|++..+
T Consensus 160 ~i~~f~~~~~~l~~~i~~~~L~~~--~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y----~~~d~~-kir~~I~iG 232 (414)
T PRK10483 160 KVITFFLTFGSLLGHVQPATLFNV--AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKY----YGKDPK-TIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHhhcCHHHHhcc--ccccchhHHHHHHHHHHHHhhccCCCcchHHHHH----hCcCHH-HHHHHHHHH
Confidence 444433333332222221111100 0111233567889999999999999999999998 454433 667999999
Q ss_pred HHHHHHHHHhHHHHHhhhcC-----------CCCch--hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 013753 263 YFVNAICYFPVALIGYWAFG-----------QDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (437)
Q Consensus 263 ~~~~~~~Y~~~g~~gy~~fg-----------~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 329 (437)
..+..++|++.-..+...-+ ++.+. +.+.+..++.+...+..++-.+++.+||--+.....|.+.+.
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986655554433 21111 112222244566677888899999999999999999999999
Q ss_pred hhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccc-hhHHhhhhcccccchhHhhhhhhhhhhhcCC-CCCCH----HHHH
Q 013753 330 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSP----KWII 403 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~-~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~-~~~~~----~~~~ 403 (437)
++.+++. ..|.....+.++++++++...|+ |-..+++.|.. ..++.-++|+++.++.||+ +...+ .+..
T Consensus 313 ~k~~~~~----~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~ 387 (414)
T PRK10483 313 FGFDDSA----MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPM 387 (414)
T ss_pred hCCCCcc----ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHH
Confidence 9876432 23444556788999999999997 89999999976 7788899999999999976 22111 1233
Q ss_pred HHHHHHHHHHHHHH
Q 013753 404 NWASIFIGVFIMLA 417 (437)
Q Consensus 404 ~~~~~~~g~~~~v~ 417 (437)
...++.+|+...+.
T Consensus 388 l~~~~~~g~~~i~~ 401 (414)
T PRK10483 388 IVLILLFGVGNALV 401 (414)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555444
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=3.7e-25 Score=213.61 Aligned_cols=370 Identities=16% Similarity=0.151 Sum_probs=270.1
Q ss_pred ceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccC
Q 013753 28 KWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGP 107 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~ 107 (437)
+...+++.+.++.+|+|+|+||.+.+..|.+++++++++++...+++.+.+.|...+.++. .++.+++|+.+||+ |+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~--~~~~~~a~~~LG~~-g~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPAD--TGLGTLAKRYLGRY-GQ 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHhChH-HH
Confidence 6678899999999999999999999999999999999999999999999999976554432 48999999999985 67
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHH
Q 013753 108 WIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYS 187 (437)
Q Consensus 108 ~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 187 (437)
++.++.+.+..+..+.+|..-.++.+.+.++.+.+. +.+.....+.+.++.... ...+.+...+++.+-+..+++..
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--~i~~~~~~l~F~~~~~~i-v~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--SMSPTAGVLLFTLVAGGV-VCVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--CCChHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998888764422 122233333333333333 22244556666666555444433
Q ss_pred HHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHH
Q 013753 188 TIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNA 267 (437)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~ 267 (437)
+....+...+-+.++.... +.+...+..++|++++||+.|+++|++.+. +++.+| +.+|++..+..+..
T Consensus 158 ~~~~~~l~p~~~~~~L~~~------~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y----~~~~~~-~~~k~i~~Gs~i~l 226 (403)
T PRK15132 158 VVMLALMMPHIHKVNLLTL------PLQQGLALSAIPVIFTSFGFHGSVPSIVSY----MGGNIR-KLRWVFIIGSAIPL 226 (403)
T ss_pred HHHHHHHHHhcCHHHHhcC------CccccHHHHHHHHHHHHhhCCcccHHHHHH----hCcCHH-HHHHHHHHHHHHHH
Confidence 3333333222221111100 111124889999999999999999999998 454433 66799999999999
Q ss_pred HHHHhHHHHHhhhcCCCC----------chhhhhcc---CCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhcC
Q 013753 268 ICYFPVALIGYWAFGQDV----------DDNVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM 334 (437)
Q Consensus 268 ~~Y~~~g~~gy~~fg~~~----------~~~il~~~---~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 334 (437)
++|++.-..+...-+.+. .++.+..+ .+.++...+..++-.+++.+||--+.....|.+.+.+++++
T Consensus 227 i~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~ 306 (403)
T PRK15132 227 VAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN 306 (403)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999987777766554321 11233322 34567778888999999999999999999999999987653
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhccc-hhHHhhhhcccccchhHhhhhhhhhhhhcCCC---CCC--HHHHHHHHHH
Q 013753 335 NFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK---RFS--PKWIINWASI 408 (437)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~la~~~p~-~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~---~~~--~~~~~~~~~~ 408 (437)
+. ..|.....+.+++++++|...|+ |....++.|.. .+.+.+++|+++.+|.|+++ +.+ .++...+.++
T Consensus 307 ~~----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~ 381 (403)
T PRK15132 307 TV----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVF 381 (403)
T ss_pred cc----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHH
Confidence 32 23566677888999999999996 88899999975 78999999999999998754 222 1345567777
Q ss_pred HHHHHHHHHHH
Q 013753 409 FIGVFIMLAST 419 (437)
Q Consensus 409 ~~g~~~~v~gt 419 (437)
.+|++..+.-.
T Consensus 382 ~~G~~~i~~~~ 392 (403)
T PRK15132 382 LCGIAVIGIQF 392 (403)
T ss_pred HHHHHHHHHHH
Confidence 77777665433
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.92 E-value=5.1e-23 Score=197.49 Aligned_cols=383 Identities=15% Similarity=0.105 Sum_probs=270.0
Q ss_pred hhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcchhh
Q 013753 33 TFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLP 112 (437)
Q Consensus 33 ~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~ 112 (437)
+..+.++.+|+|+|+||-.....|.+++++++++.+.+++++.+.+.|...+.++ +..++.+++|+.+|++ |..+..+
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~-g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKT-GGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChh-HHHHHHH
Confidence 5899999999999999999999999999999999999999999999997654422 2239999999999986 5579999
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 013753 113 QQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWA 192 (437)
Q Consensus 113 ~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 192 (437)
++++..+..+.+|...+.+.+++++.+..+. .+.++....+++.+++...... .-+...+++.+-+...+...+....
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~~-~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLGF-APLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-CCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877665422 1223344334444443333333 4466666666555544444444444
Q ss_pred hhhccccccCccc-cc---cCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCC---CCc--ccchhhhhHHHH
Q 013753 193 GSLSHGRIENVSY-AY---KHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE---KPS--KILMWKGALGAY 263 (437)
Q Consensus 193 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~---~p~--~~~~~~~~~~~~ 263 (437)
+.+-+-+.++... +. +.............++|++++||..|+++|++....|.+.+ +++ +++.+|+...+.
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 4432222222111 00 00000112245788999999999999999999887443332 223 457779999999
Q ss_pred HHHHHHHHhHHHHHhhhcCCCCc-------hhhhhc----cCC---C-----hHHHHHHHHHHHHHHHHhcccccccHHH
Q 013753 264 FVNAICYFPVALIGYWAFGQDVD-------DNVLMA----LKR---P-----GWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (437)
Q Consensus 264 ~~~~~~Y~~~g~~gy~~fg~~~~-------~~il~~----~~~---~-----~~~~~~~~~~~~~~~~~s~pl~~~~~~~ 324 (437)
.+..++|++.-+.+...-+++.- .+++.. +++ . .+...+..++-.+++.+||--+....+|
T Consensus 261 ~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E 340 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLE 340 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777763321 121222 222 1 4566777778888999999999999999
Q ss_pred HHHHHhhh----c-CCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCH
Q 013753 325 LLEGMMIK----R-MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP 399 (437)
Q Consensus 325 ~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~ 399 (437)
.++.++.+ . .++.+++..+......+++.+...+...|+.-.+++-.|+-..+.+.|++|...-.|.-.-++.|.
T Consensus 341 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~ 420 (443)
T PRK13629 341 GLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG 420 (443)
T ss_pred HHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC
Confidence 99998842 1 112234555666777888899999999999999999888888899999999998877533222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013753 400 KWIINWASIFIGVFIMLASTI 420 (437)
Q Consensus 400 ~~~~~~~~~~~g~~~~v~gt~ 420 (437)
+..++.++..|++......|
T Consensus 421 -~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 421 -RLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred -CchhHHHHHHHHHHHHHHHH
Confidence 23478888888877665554
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.90 E-value=1.6e-22 Score=195.95 Aligned_cols=352 Identities=11% Similarity=0.057 Sum_probs=256.7
Q ss_pred hhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcchhh
Q 013753 33 TFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLP 112 (437)
Q Consensus 33 ~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~ 112 (437)
.+.+.++++|+|+|++|...++.||++.++..++.+.+++++.+.+.|.....+. +..++.|++++.+||+.| .+..+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~ii~~ 86 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-ILITL 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HHHHH
Confidence 7889999999999999999999999988888888888889999988886433322 123999999999999766 68999
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 013753 113 QQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWA 192 (437)
Q Consensus 113 ~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 192 (437)
.+++..+..+.+|....++.+++++....... .+.+....+...+..........+.+.+++.+.....+..+.....
T Consensus 87 lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~ 164 (397)
T TIGR00814 87 LYFFAIYPILLIYSVAITNDSASFLVNQLGTA--PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL 164 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887754221 1122222223333333344447888888888877655555455455
Q ss_pred hhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCc--ccchhhhhHHHHHHHHHHH
Q 013753 193 GSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS--KILMWKGALGAYFVNAICY 270 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~--~~~~~~~~~~~~~~~~~~Y 270 (437)
+...+.+.++... .+...+.+.++..+++..++||.+|+++++...+.+.+.+||+ +++.+|+...+..+..++|
T Consensus 165 ~lip~~~~~~L~~---~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y 241 (397)
T TIGR00814 165 YLIPHWNGANLTT---FPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATV 241 (397)
T ss_pred HHHHHcCHHHHhc---CCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4443322222111 1111235688999999999999999999999843222245343 4567799999999999999
Q ss_pred HhHHHHHhhhcCCCCch-------hhhh---ccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc----CCC
Q 013753 271 FPVALIGYWAFGQDVDD-------NVLM---ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR----MNF 336 (437)
Q Consensus 271 ~~~g~~gy~~fg~~~~~-------~il~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~----~~~ 336 (437)
+..-+.+....+++... +.+. |-.+.++...+..++..+++.+|+--+....+|.+.+.+.+. .++
T Consensus 242 ~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~ 321 (397)
T TIGR00814 242 MFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKK 321 (397)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Confidence 99998888887643221 1122 112335666777788889999999999999999999988321 122
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhh
Q 013753 337 PPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 391 (437)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~ 391 (437)
.+++..+......+++.+...+...|+.-.+++-.|+-..+.+.|++|...-.|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 322 INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 3344555566677788999999999999999998888888899999999987775
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.85 E-value=1.6e-18 Score=172.88 Aligned_cols=353 Identities=11% Similarity=0.057 Sum_probs=209.0
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
++|++|.++.+...+++++|+|++.+|..+++.|. .+++.+++.+++.......+.|...+.|..+ ...+++++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 56789999999999999999999999988888876 5788888888888989999999887788776 77888999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHH--hhcCCCcchhhHHHHHHH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFF--LSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~p--l~~~~~l~~l~~~s~~~~ 180 (437)
|+.| ++..+..++.......++.....+++..+++. ..+.....++...+++. ....+..+...+++.+..
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGA------TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9877 55666555555544455444445555544431 11111112222222222 222335555666655555
Q ss_pred HHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhH
Q 013753 181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL 260 (437)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~ 260 (437)
...++.++++.+......++++.+..+. +.....+.++..++....|+|.|.+.+..+.+| .|||+| ++||++.
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~iPrAi~ 227 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDA----VENPER-NVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHH----hhCccc-cccHHHH
Confidence 4333332222222221111121111111 111223467788899999999999999999998 899998 8999999
Q ss_pred HHHHHHHHHHHhHHHHHhhhcCCC-C---chh---hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc
Q 013753 261 GAYFVNAICYFPVALIGYWAFGQD-V---DDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (437)
Q Consensus 261 ~~~~~~~~~Y~~~g~~gy~~fg~~-~---~~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 333 (437)
.+..++.++|++.........+++ . +++ ...+.-. ++...+......++.+.+.........|.....-+++
T Consensus 228 ~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g-~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg 306 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFN-PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEG 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998776554333321 1 111 1111111 2333344444445555544433333333333332211
Q ss_pred --------CCCCCchhhHHHHHHHHHHHHHHHHhhcc----chhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 334 --------MNFPPGAAVRVVARSAYVAFTLFVGVTFP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 334 --------~~~~~~~~~~~~~~~~~~~~~~~la~~~p----~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
.| +++.+.+.+.....+...+.+....| +++.+.++.+. ...+.|.++.+.++++|+++
T Consensus 307 ~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~--~~~i~y~~~~~~~~~lr~~~ 377 (438)
T PRK10655 307 YFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVV--TNIIPYILSMAALVIIQKVA 377 (438)
T ss_pred chhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhC
Confidence 12 23455555544333332222222223 35566665443 34588999999988877654
No 17
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.83 E-value=5.1e-19 Score=170.11 Aligned_cols=364 Identities=15% Similarity=0.146 Sum_probs=244.2
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHHHH-hcC-hhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMA-YLG-WGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~-~~G-~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
...+||.|.+.++..+++.++|+|++..|.... ++| ...+++.+++.++++...+...+|.....|+.+ ....+..
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG--gd~ayi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG--GDYAYIS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--cchhhHH
Confidence 356889999999999999999999999998866 443 445677778899999999999999888777665 5566678
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhccc-HHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCC--CcchhhHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC-LKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLP--DINSVSSV 175 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~ 175 (437)
++||+.+|....++...+..-..+..+.+..++| +.+.++ .| +.++.....+..+++..+.+.. +.+--+++
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp----~c-~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP----LC-DVPRVASKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC----CC-CCchHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 8999988865566665555556667778888877 455544 12 2333444444444555544442 44444555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc---ccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcc
Q 013753 176 SLAAAVMSLSYSTIAWAGSLSH---GRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (437)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~ 252 (437)
+.+..++.++.+.++++..++. +..++.+... -.....+..++..++-...|+|.|+..+-.+.+| +|||+|
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteE----iknP~k 235 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEE----IKNPRR 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHh----hcCccc
Confidence 5555555666555555544432 2222222211 1223456777889999999999999999999998 899998
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHHHhhhcC--CCCchhhhh-ccC---CChHHHHHHHHHHHHHHHHhcccccccHHHHH
Q 013753 253 ILMWKGALGAYFVNAICYFPVALIGYWAFG--QDVDDNVLM-ALK---RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLL 326 (437)
Q Consensus 253 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg--~~~~~~il~-~~~---~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~ 326 (437)
++||+..+++.+++++|+++.+..+.+-. |...++... .+. -+.+. -...+++.++.+.+.-..++..-+.+
T Consensus 236 -tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 236 -TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred -cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 89999999999999999999988775553 212221111 111 12333 45566777777777776677666666
Q ss_pred HHHhhhcC--------CCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCC
Q 013753 327 EGMMIKRM--------NFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS 398 (437)
Q Consensus 327 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~ 398 (437)
....++.. |.++.++.-.+ .......++....+|+..++++.+-.-.......+=+++++|.+++...|
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~~al---lf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPRPAL---LFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCChHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 65555442 11221222222 22233334444556899999999888787788888899999988877655
Q ss_pred HHH
Q 013753 399 PKW 401 (437)
Q Consensus 399 ~~~ 401 (437)
+-|
T Consensus 391 PiK 393 (479)
T KOG1287|consen 391 PIK 393 (479)
T ss_pred CEe
Confidence 433
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.83 E-value=3.5e-18 Score=169.98 Aligned_cols=353 Identities=13% Similarity=0.092 Sum_probs=208.1
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
.++|+++.++.+...+++++|+|++.+|...++.|.. .+..+++.++........+.|...+.|+.+ +..+++++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 3678899999999999999999999999999888753 677777888888888899999988899876 77788888 8
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHH--HhhcCCCcchhhHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHF--FLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~--pl~~~~~l~~l~~~s~~~ 179 (437)
||++| +...+..+........++.....+++..+++... +.....+....+++ -+...+..+..+.++.+.
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~------~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~ 150 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN------DPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIG 150 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC------ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99887 4566665654444455555555566665544211 00111111112222 222233555555555555
Q ss_pred HHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhh
Q 013753 180 AVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGA 259 (437)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~ 259 (437)
.++.++.++........+.++++....+. ...++++.++..++...+|+|.|.+.+....+| +|||+| +++|++
T Consensus 151 ~~~~li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E----~knP~r-~iPrAi 224 (435)
T PRK10435 151 LVLVLIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGM----VKNPKR-TVPLAT 224 (435)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhCccc-cccHHH
Confidence 54333322222222211111111111111 112345778999999999999999999999998 899988 899999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcCCC----Cchh---hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhh
Q 013753 260 LGAYFVNAICYFPVALIGYWAFGQD----VDDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK 332 (437)
Q Consensus 260 ~~~~~~~~~~Y~~~g~~gy~~fg~~----~~~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~ 332 (437)
..+..++.++|++..+......+.+ .+++ ...+.. .++...+..++..+..+.+.-.......+...+.-++
T Consensus 225 ~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ard 303 (435)
T PRK10435 225 MLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTIL-GNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAAND 303 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998887765444321 1111 111111 2344455555455555544422222222222222211
Q ss_pred --------cCCCCCchhhHHHHHHHHHHH--HHHHHh-hc------cchhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 333 --------RMNFPPGAAVRVVARSAYVAF--TLFVGV-TF------PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 333 --------~~~~~~~~~~~~~~~~~~~~~--~~~la~-~~------p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
+.+ |++.+.+.+.....+.. ..++.. .. ..++.+.++.+. ...+.|++.++.++|.++++
T Consensus 304 G~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~l~~y~~~~~~~ir~~~~~ 380 (435)
T PRK10435 304 GNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVL--LTMLPYFYSCVDLIRFEGVN 380 (435)
T ss_pred CCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCc
Confidence 112 34455555443322221 111111 11 135566666443 35678899999999876544
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=99.81 E-value=9.2e-18 Score=167.86 Aligned_cols=352 Identities=13% Similarity=0.129 Sum_probs=210.3
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 99 (437)
++.+|+.+.++..+..++.++|+|++..|.. .+++|. ..++.+++.+++.......+.|...+.|..+ +..+++++
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~ 93 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYK 93 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHH
Confidence 4678899999999999999999999998855 556675 4778888899999999999999999899877 88999999
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (437)
.+||.+| ++..+..++.......+.....+.+++.+.+ +.+...+..+.. +.+-.....+.+..++++...
T Consensus 94 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~-~l~~~lN~~gv~~~~~i~~~~ 164 (458)
T PRK10249 94 YWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-------DVPTWIWAAAFF-IIINAVNLVNVRLYGETEFWF 164 (458)
T ss_pred HhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------cCcHHHHHHHHH-HHHHHHHHhcchhhhhHHHHH
Confidence 9999887 5666666666554455555444444443322 111122222222 222222233555555555444
Q ss_pred HHHHHHHHHHHH---Hhhhccccc---cCcccccc-CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcc
Q 013753 180 AVMSLSYSTIAW---AGSLSHGRI---ENVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (437)
Q Consensus 180 ~~~~~~~~~i~~---~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~ 252 (437)
....+..+++.+ ......+.. .+.+..++ ....++++.++..++....|+|.|.+.+....+| +|||+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~~~P~k 240 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE----ARDPEK 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcCHhh
Confidence 333222111111 111111111 11111111 1112356788899999999999999999999998 899998
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCC----chhhh---hccCCChHHHHHHHHHHHHHHHHhcccccccHHHH
Q 013753 253 ILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----DDNVL---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (437)
Q Consensus 253 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~~il---~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~ 325 (437)
++||++..+.....++|.+.........+++. .++.. .+.. .++...+..++..+..+.+..-......|.
T Consensus 241 -~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~ 318 (458)
T PRK10249 241 -SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRM 318 (458)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999876555444433221 11111 1121 234444455555555555554444444444
Q ss_pred HHHHhhhc--------CCCCCchhhHHHHHHHHHH-HHHHHHhhcc--chhHHhhhhcccccchhHhhhhhhhhhhhcC
Q 013753 326 LEGMMIKR--------MNFPPGAAVRVVARSAYVA-FTLFVGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 393 (437)
Q Consensus 326 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~la~~~p--~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~ 393 (437)
+...-+++ .+ +++.+.+.+.....+. +..++....| .++.+.+..+. ...+.|++|++.+++.||
T Consensus 319 l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 319 LFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA--TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44333221 12 2344555544333332 2222322333 25555565443 356999999999999874
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.81 E-value=3e-17 Score=163.87 Aligned_cols=355 Identities=15% Similarity=0.117 Sum_probs=204.2
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
+++|+.|.++.+...+++++|+|++.+|...++.|. ..+..+++.++........+.|...+.|..+ ...+++++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 467889999999999999999999999988887764 3556667777777778888899888888776 7788899999
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHh--hcCCCcchhhHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFL--SQLPDINSVSSVSLAA 179 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~~~s~~~ 179 (437)
||+.| ++..+..++.......+......++...+.+... +.....++...+.+.+ ......+...+++.+.
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99877 4555555555444444444444445544433210 1122222222222222 2233566777776666
Q ss_pred HHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhh
Q 013753 180 AVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGA 259 (437)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~ 259 (437)
....++.+++.....+...+.++....++ ....+++.++..++...+|+|.|.+......+| +|||+| +++|++
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~iPrai 228 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHH----hhCccc-chhHHH
Confidence 65444433333222221111111111111 111234567778888999999999999999998 899998 899999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcCCCC----chhhhhccC--CChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc
Q 013753 260 LGAYFVNAICYFPVALIGYWAFGQDV----DDNVLMALK--RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (437)
Q Consensus 260 ~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~~il~~~~--~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 333 (437)
..+..++.++|++..+......+++. +++...-.. .+++...+..+...+....+.-.......+.....-+++
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg 308 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988877544443211 111111110 112222233333333333222222222333333322211
Q ss_pred --------CCCCCchhhHHHHHHHHHHHHHHHHhhccc----hhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 334 --------MNFPPGAAVRVVARSAYVAFTLFVGVTFPF----FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 334 --------~~~~~~~~~~~~~~~~~~~~~~~la~~~p~----~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
.| +++.+.+.+.....+.....+....|+ ++.+.++.+ ....+.|++|.+..+++++++
T Consensus 309 ~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~ 379 (445)
T PRK10644 309 LFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_pred CccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 12 234555555444433333222222343 444444422 235688999999988886654
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.80 E-value=2.8e-17 Score=165.22 Aligned_cols=356 Identities=16% Similarity=0.141 Sum_probs=214.8
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHhhchhccCC-cccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWG-PGTMVLVISWVTTLNTMWQMINLHECVPG-VRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~-~g~~~l~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~~~~~~ 100 (437)
++|+.|.++.++..+++++|+|++.+|....+.|.. ..++.+++.++........+.|...+.|+ .+ ...++.++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 477899999999999999999999999887755532 34566788888888888999999888888 65 778889999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHH--HHHHHhhcCCCcchhhHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFG--SLHFFLSQLPDINSVSSVSLA 178 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s~~ 178 (437)
+||+.| ++..+..+........++.....+++..+++.... .+.....+... .+..-....++.+..++++.+
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 83 FGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS----GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999877 45666666555555566666666666666653211 11111122222 222233344577777777777
Q ss_pred HHHHHHHHHHHHHHhhhccccccCccccc-cC--CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccch
Q 013753 179 AAVMSLSYSTIAWAGSLSHGRIENVSYAY-KH--TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM 255 (437)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~ 255 (437)
.....+..++++++......+.++..... +. +...+.+.++..++...+|+|.|.+......+| .|| +| ++
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~-~r-~i 231 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGR----AKN-KS-DV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHH----Hhc-cc-cc
Confidence 76654443333232221111111111010 00 111234667888899999999999999999998 898 55 89
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHhhhcCCCC----chh----hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHH
Q 013753 256 WKGALGAYFVNAICYFPVALIGYWAFGQDV----DDN----VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLE 327 (437)
Q Consensus 256 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~~----il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~ 327 (437)
+|++..+..++.++|++.........+.+. +++ +.... ..++...+..+...++.+.+.-.......+...
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~-~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMI-VGKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776554433211 111 11111 112333444455555555554444444444444
Q ss_pred HHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhc--cchhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 328 GMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 328 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~--p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
.+-+++ .| +++.+.+.+.....+.....+.... .+++.+.++.+. ...+.|.++.+..+++|+++
T Consensus 311 amardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 311 SAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVV--MILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHhCCChhHHHHhhC-ccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC
Confidence 333221 12 2345555554443333322222222 346666666443 34588888988888877654
No 22
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.80 E-value=3.4e-17 Score=166.72 Aligned_cols=360 Identities=12% Similarity=0.056 Sum_probs=227.6
Q ss_pred cCccccCCceeehhhhhhhhccccccchHHHHH--HhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHH
Q 013753 20 DGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAM--AYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLG 97 (437)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~--~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~ 97 (437)
+++.+|+.+.++.++..++.++|+|++.+|... ..+|.. .++.+++.++.+......+.|...+.|..+ +...+.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~ 99 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYS 99 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeH
Confidence 345789999999999999999999999999653 346743 566778888888899999999998898876 677778
Q ss_pred HHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCC---------Ccccc-hhhHHHHHHHHHHhhcCC
Q 013753 98 RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC---------KPLRQ-TFWILIFGSLHFFLSQLP 167 (437)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~---------~~~~~-~~~~~i~~~i~~pl~~~~ 167 (437)
++.+|+..| ++..+..++.......+.....+.+++.++....+.. +.... .....+..++++-....+
T Consensus 100 ~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 899999777 5666666666666666666666777776665311100 00001 111222222222334455
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhccccccCccccc---cCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCC
Q 013753 168 DINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAY---KHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 244 (437)
Q Consensus 168 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~ 244 (437)
+.+..++++.+.....+..++++++......+.++..... .+...+.++.+++.++...+|+|.|.+.+....+|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE-- 256 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEE-- 256 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHh--
Confidence 7888888888877766655444444443333222211000 00112345678999999999999999999888888
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCC---Cchh---hhhccCCChHHHHHHHHHHHHHHHHhcccc
Q 013753 245 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD---VDDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVF 318 (437)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~---~~~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~ 318 (437)
.|||+| ++||++..++.+++++|.++.+.-....+.+ .+++ ..... ..++...+..+...+....+....
T Consensus 257 --~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g~~~~~~ii~~~~~~~~~~sl~~~ 332 (557)
T TIGR00906 257 --VKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-GWGPAKYIVAVGALCGMSTSLLGG 332 (557)
T ss_pred --ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 899998 8999999999999999998876644333311 1111 22222 224555555555666666655555
Q ss_pred cccHHHHHHHHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhh
Q 013753 319 AMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLV 390 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~ 390 (437)
+...-+.+..+-+++ .|.+++.+.+.......+ +.+++.. .+++.+.++... +..+.|.++++..++
T Consensus 333 ~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv--~~il~~~-~~~~~l~~l~si--g~ll~y~lv~~~~l~ 407 (557)
T TIGR00906 333 MFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAI--AALMAFL-FDLKALVDLLSI--GTLLAYSLVAACVLI 407 (557)
T ss_pred HHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHH--HHHHHHH-cCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 555555555554322 132334455544433322 2333333 356666666433 356889999888877
Q ss_pred hcCC
Q 013753 391 IKKP 394 (437)
Q Consensus 391 ~~~~ 394 (437)
+|++
T Consensus 408 lR~~ 411 (557)
T TIGR00906 408 LRYQ 411 (557)
T ss_pred hhcc
Confidence 7743
No 23
>TIGR00909 2A0306 amino acid transporter.
Probab=99.80 E-value=1.4e-17 Score=165.84 Aligned_cols=351 Identities=15% Similarity=0.040 Sum_probs=223.0
Q ss_pred ccCCceeehhhhhhhhccccccchHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 24 TRRAKWWYSTFHCVTAMIGAGVLSLPYAMA-YLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~-~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
+|+.|.++.++..+++++|+|++.+|.... ..|. ..++.+++.++........+.|..++.|+.+ +..++.++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhC
Confidence 688999999999999999999999996654 4443 4666777788888888899999988888765 77788999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCc-c-----cchh--hHHHHHHHHHHhhcCCCcchhhH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKP-L-----RQTF--WILIFGSLHFFLSQLPDINSVSS 174 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~-~-----~~~~--~~~i~~~i~~pl~~~~~l~~l~~ 174 (437)
|+.| ++..+..++.....+..+....++++..+++....+.+. . +... ...+...+..-....+..+...+
T Consensus 79 ~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9877 456666677767777777777888887777632100000 0 0011 11122333333334457788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc
Q 013753 175 VSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (437)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (437)
++.+...+.+..+++.++....+.+.++.+. ..+.++.++..++...+|+|.|.+......+| .|||+| +
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E----~~~p~r-~ 227 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYTP-----FMPMGFGGVGAATALVFFAFIGFEAISTAAEE----VKNPER-D 227 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC-----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHh----ccCccc-c
Confidence 8888777655544433333332222222111 11345667889999999999999999999999 899987 7
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhhcCCC-C-c--h---hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHH
Q 013753 255 MWKGALGAYFVNAICYFPVALIGYWAFGQD-V-D--D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLE 327 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~-~--~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~ 327 (437)
++|++..+..++.++|++.........+.+ . + + .+..+. ..++...+..+...++.+.+.........+.+.
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998876655433211 0 0 1 122222 224555566667777777777666666555555
Q ss_pred HHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCC
Q 013753 328 GMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 394 (437)
Q Consensus 328 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~ 394 (437)
..-+++ .|.+++.+.+.+.....+.. ++. ...+++.+.++.+. ...+.|++.++.++++|++
T Consensus 307 ~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~--~~~-~~~~~~~l~~~~~~--~~~~~y~~~~~a~~~lr~~ 376 (429)
T TIGR00909 307 AMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAA--LLA-SLVPLEGLAELTSI--GTLIAFAAVNVAVIILRRR 376 (429)
T ss_pred HHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHH--HHH-HHcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 544322 12233445554333222222 122 23456777766543 3457777777777776553
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.80 E-value=3.3e-17 Score=164.61 Aligned_cols=353 Identities=10% Similarity=0.072 Sum_probs=201.3
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
+.+|+++.++..+..++.++|+|++..|.. .+.+|-...++.+++.+++.......+.|...+.|..+ ++.++++++
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHh
Confidence 578899999999999999999999988865 56777544567778888889999999999998898876 888999999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
+||+.| ++..+..++.....+.......+.+++.+.+ ..+...+.++..+ .+-....+..+....++....
T Consensus 89 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~-~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 89 LGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------QVPVWPWCLLFCA-LIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------cCcHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 999877 4566665555444443333333333222211 1111222222222 222222334555554444433
Q ss_pred HHHHHHHHHHHHhh---h---cc-cccc---CccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 181 VMSLSYSTIAWAGS---L---SH-GRIE---NVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 181 ~~~~~~~~i~~~~~---~---~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
...++.++..++.. . .. .+.+ ..+....+...+++..++..++...+|+|.|.+.+....+| +|||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP 235 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE----TENP 235 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcCh
Confidence 32222221111111 1 00 0000 00000000011233456788888999999999999999999 8999
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhhhcCC-CC---ch---hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHH
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQ-DV---DD---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVF 323 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~-~~---~~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~ 323 (437)
+| +++|++..+...+.++|+...+......+. +. ++ ....+.. .++...+..++.+++.+.+.--.+...-
T Consensus 236 ~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~s 313 (471)
T PRK11387 236 AK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG-IPYAADIFNFVILTAILSAANSGLYASG 313 (471)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98 899999999999999999887665444442 21 11 1122222 2344455555656666555544444444
Q ss_pred HHHHHHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhcc-c--hhHHhhhhcccccchhHhhhhhhhhhhhc
Q 013753 324 HLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFP-F--FGDLLGFFGGFGFTPTSYFLPSIMWLVIK 392 (437)
Q Consensus 324 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~p-~--~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~ 392 (437)
+.+..+-+++ .+ +++.+.+.+..........++....+ + +..+.++.+ ....+.|+++++.++++|
T Consensus 314 R~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~--~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 314 RMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISG--FAVVAVWLSICASHFMFR 390 (471)
T ss_pred HHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4444443322 12 23445554443322222222222222 1 223333332 234577888988888876
Q ss_pred CC
Q 013753 393 KP 394 (437)
Q Consensus 393 ~~ 394 (437)
++
T Consensus 391 ~~ 392 (471)
T PRK11387 391 RR 392 (471)
T ss_pred HH
Confidence 54
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=99.78 E-value=2.1e-16 Score=159.32 Aligned_cols=355 Identities=11% Similarity=0.074 Sum_probs=209.4
Q ss_pred ccccCCceeehhhhhhhhccccccchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~-a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
+.+|+++.++..+..++.++|+|++..|. +.+.+|- .+++.+++.+++.......+.|+..+.|..+ +..+++++.
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~ 101 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREF 101 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 36788999999999999999999999886 5667775 5677888889999999999999998899877 889999999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
+||+.| +++.+..++.............+.+...+ +.+ .+.+...+..+...+ .-.......+....++....
T Consensus 102 ~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~----~~~~~~~~~~~~~~l-~~~iN~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 102 LGEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF----GGVPQWVFALAALTI-VGTMNMIGVKWFAEMEFWFA 174 (499)
T ss_pred hCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----CCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999877 45666555544333333232233222211 100 112222222222222 22222234555555555544
Q ss_pred HHHHHHHHHHHHh---hhccccccCc-cccc----c-CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCc
Q 013753 181 VMSLSYSTIAWAG---SLSHGRIENV-SYAY----K-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (437)
Q Consensus 181 ~~~~~~~~i~~~~---~~~~~~~~~~-~~~~----~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~ 251 (437)
.+.++.++..++. ....+...+. .... + ....++++.++..++...+|+|.|.+.+....+| .|||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE----~knP~ 250 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGE----CKDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHH----hcChh
Confidence 3333222222111 1111111110 0000 0 1112345566677778899999999999999998 89999
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCC-C---chhhhhcc--CCChHHHHHHHHHHHHHHHHhcccccccHHHH
Q 013753 252 KILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DDNVLMAL--KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (437)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~---~~~il~~~--~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~ 325 (437)
| ++||++..++..+.++|+..........+.+ . .++...-+ ...++...+..+..++..+.+..-......+.
T Consensus 251 r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~ 329 (499)
T PRK15049 251 T-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRI 329 (499)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999999999998766554444321 1 12222111 12234445566666666666665555555555
Q ss_pred HHHHhhhcC--------CCCCchhhHHHHHHHHH-HHHHHHHhhcc--chhHHhhhhcccccchhHhhhhhhhhhhhcCC
Q 013753 326 LEGMMIKRM--------NFPPGAAVRVVARSAYV-AFTLFVGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 394 (437)
Q Consensus 326 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~la~~~p--~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~ 394 (437)
+..+-+++. + +++.+.+.+.....+ .+..++....| .++.++++.+. ...+.|++|++.+++.||+
T Consensus 330 l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~--~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 330 LRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASL--GIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 554443221 2 334555555433332 22222332333 25666676543 4568999999999988753
No 26
>PRK11021 putative transporter; Provisional
Probab=99.78 E-value=4.9e-16 Score=153.59 Aligned_cols=345 Identities=13% Similarity=0.160 Sum_probs=198.7
Q ss_pred CceeehhhhhhhhccccccchHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCc
Q 013753 27 AKWWYSTFHCVTAMIGAGVLSLPYAM-AYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL 105 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 105 (437)
.|+++++...+++++|+|++.+|... +.+|- ..+..+++.++........+.|...+.|+.+ +...++++.+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchh
Confidence 36788999999999999999999664 45564 5788888899999999999999999899877 88899999999988
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 013753 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLS 185 (437)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 185 (437)
|. ...+..+........+.......++...++ .. ++. .....+...+.+-+...+..+..++++.+..+..+.
T Consensus 78 gf-~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~ 150 (410)
T PRK11021 78 GR-VTGWLFLSVIPVGLPAALQIAAGFGQALFG----WS-SWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVA 150 (410)
T ss_pred HH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----CC-Cch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 74 444444443222222222223333333222 11 111 111111222222233344566666666554432222
Q ss_pred HHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHH
Q 013753 186 YSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFV 265 (437)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~ 265 (437)
.... .. . .++.+..+..+. ...+.++.++..++...+|+|.|.+.+....+| +|||+| ++||++..+..+
T Consensus 151 i~~~--~~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~k-~iPrAi~~~~~~ 220 (410)
T PRK11021 151 LVVA--IW-W-AGDIKPADIPFP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASE----FKNPER-DFPRALMIGLLL 220 (410)
T ss_pred HHHH--HH-H-HcCCchhcCCCC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHh----ccCccc-cccHHHHHHHHH
Confidence 1111 11 1 111111111111 112346788899999999999999999999999 899998 899999999999
Q ss_pred HHHHHHhHHHHHh--hhcCCCCc--h---hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc-----
Q 013753 266 NAICYFPVALIGY--WAFGQDVD--D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR----- 333 (437)
Q Consensus 266 ~~~~Y~~~g~~gy--~~fg~~~~--~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~----- 333 (437)
+.++|++....-. ..++|... + .+....-. ++...+..+...+..+.+.........|.+..+-+++
T Consensus 221 ~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~ 299 (410)
T PRK11021 221 AGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSY 299 (410)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHH
Confidence 9999998776532 22233211 1 11111111 1222333444445555454433333344443333221
Q ss_pred ---CCCCCchhhHHHHHHHHH-HHHHHHHh-hccchhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 334 ---MNFPPGAAVRVVARSAYV-AFTLFVGV-TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 334 ---~~~~~~~~~~~~~~~~~~-~~~~~la~-~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
.| +++.+.+.+.....+ ....++.. ...+++.+.+.... ...+.|.++.+..+|+++++
T Consensus 300 ~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 300 LARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANG--IFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 12 234455544333222 22222222 23578888777553 35688999888888887654
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.78 E-value=1.8e-16 Score=159.15 Aligned_cols=354 Identities=16% Similarity=0.146 Sum_probs=213.6
Q ss_pred cCCceeehhhhhhhhccccccchHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCc-ccCCHHHHHHHHhC
Q 013753 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMA-YLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGV-RFDRYIDLGRHAFG 102 (437)
Q Consensus 25 ~~~~~~~~~~~l~~~~iG~Gil~lP~a~~-~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~-~~~~y~~~~~~~~G 102 (437)
|+.|.++.+...+++++|+|++.+|.... .+|....++.+++.++........+.|...+.|+. + ...+++++.+|
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG--G~y~y~~~~fG 78 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG--GVYSYAKAGFG 78 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHcC
Confidence 57899999999999999999999997755 55543345667888888888899999998888864 2 56777999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHH--HHHhhcCCCcchhhHHHHHHH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s~~~~ 180 (437)
|..| ++..+..++.......++......+++.+++... ..++.........+ .+-....+..+..++++.+..
T Consensus 79 ~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~ 153 (468)
T TIGR03810 79 PFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG----GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITT 153 (468)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9877 5666666666555555666655555555544321 11111111212111 222223456777777777766
Q ss_pred HHHHHHHHHHHHhhh--ccccccCcc-cccc--CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccch
Q 013753 181 VMSLSYSTIAWAGSL--SHGRIENVS-YAYK--HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM 255 (437)
Q Consensus 181 ~~~~~~~~i~~~~~~--~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~ 255 (437)
+..++.+++.++... ..++....+ +... .....+.+.++..++....|+|.|.+......+| .|| |+++
T Consensus 154 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e----~k~--~k~i 227 (468)
T TIGR03810 154 IAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSAR----AEK--RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhh----ccC--cccc
Confidence 655443333222111 111111101 0000 0111233556778899999999999998888887 676 3478
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHhhhcCCCC----ch----hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHH
Q 013753 256 WKGALGAYFVNAICYFPVALIGYWAFGQDV----DD----NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLE 327 (437)
Q Consensus 256 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~----~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~ 327 (437)
+|++..+...+.++|.+..+..+...+++. ++ ....+.. .++...+..+...++.+.+....+...-|...
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~ 306 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPL 306 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998877665444211 11 1222222 24555566667777777776665555555554
Q ss_pred HHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhc--cchhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 328 GMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 328 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~--p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
.+-+++ .| +++.+.+.+.....+.....+.... +.++.+.++.+. ...+.|+++++.++|+++++
T Consensus 307 a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 307 LMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 443322 12 3345555554433332222222122 346666666443 35689999999999886543
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.77 E-value=1.1e-16 Score=160.11 Aligned_cols=352 Identities=15% Similarity=0.129 Sum_probs=210.5
Q ss_pred CccccCCceeehhhhhhhhccccccchHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLP-YAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP-~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 99 (437)
.+.+|+++.++..+..+++++|+|++.+| .+.+++|. .+++.+++.+++.......+.|...+.|..+ +..+++++
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~ 84 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADD 84 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHH
Confidence 34788899999999999999999999999 55777775 5788888899999999999999988888876 88999999
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHH-HHHHHHhhcCCCcchhhHHHHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIF-GSLHFFLSQLPDINSVSSVSLA 178 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~~i~~pl~~~~~l~~l~~~s~~ 178 (437)
.+||+.| ++..+..+......+.+.....+.++..+.+. . ..+.... ..+..-.......+...+++..
T Consensus 85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFW 154 (452)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999877 56666666666666666666666555544321 1 1222211 1112222223355556656555
Q ss_pred HHHHHHHHHHHHHHh---hhcccccc-C---cccccc-CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 179 AAVMSLSYSTIAWAG---SLSHGRIE-N---VSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 179 ~~~~~~~~~~i~~~~---~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
..+..++.++..++. ......+. + .+...+ ....++++.++..++....|+|.|.+.+....+| +|||
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E----~k~P 230 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAE----SSNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHh----hcCh
Confidence 444333322221111 11111110 1 111011 1111345677999999999999999999999998 8999
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCC-c--h-----hhhhccCCChHHHHHHHHHHHHHHHHhcccccccH
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-D--D-----NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-~--~-----~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~ 322 (437)
+| ++||++..+.....++|++.........+.+. . + ...+... .++...+...+..+..+.+........
T Consensus 231 ~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 231 IK-SITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLG-IPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 89999998888889999986555444333111 1 1 1122221 233444445555555555554444444
Q ss_pred HHHHHHHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhc-cc--hhHHhhhhcccccchhHhhhhhhhhhhh
Q 013753 323 FHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTF-PF--FGDLLGFFGGFGFTPTSYFLPSIMWLVI 391 (437)
Q Consensus 323 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~-p~--~~~~~~~~Ga~~~~~~~~i~P~l~~l~~ 391 (437)
.|.+...-+++ .| +++.+.+.+.....+.....+-... ++ +..+++..+.. ..+.|++.++.+++.
T Consensus 309 sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~--~~~~y~~~~~~~i~~ 385 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAI--ALLVYLVIAVSQLRM 385 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45554443322 12 3345555554333332222221111 21 34445544433 358888888888887
Q ss_pred cCC
Q 013753 392 KKP 394 (437)
Q Consensus 392 ~~~ 394 (437)
|++
T Consensus 386 r~~ 388 (452)
T TIGR01773 386 RKK 388 (452)
T ss_pred HHH
Confidence 653
No 29
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.77 E-value=1.5e-16 Score=158.85 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=154.8
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHHH-HhcChh-HHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAM-AYLGWG-PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~-~~~G~~-~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
++.+|+.|.++.....++.++|+|++..|... ...|.. ..+..+++.+++.......+.|...+.|+.+ +...+.+
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~ 81 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLK 81 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHH
Confidence 35788999999999999999999999999764 455632 3566677888888889999999988888766 6667788
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHH--HHHHHHhhcCCCcchhhHHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIF--GSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~--~~i~~pl~~~~~l~~l~~~s 176 (437)
+.+||..|....+...+.........+....++++....+ ++......+. .++.+-....+..+...+++
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~ 153 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQ 153 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999987743333233333333444555555555543221 1111111111 11222222344566666776
Q ss_pred HHHHHHHHHHHHHHHHhhh--ccccccCccccccCC-CchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCccc
Q 013753 177 LAAAVMSLSYSTIAWAGSL--SHGRIENVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKI 253 (437)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~ 253 (437)
.+.....++.++++++... ..+. +.+...+.. ....++.++..++...+|+|.|.+......+| +|||+|
T Consensus 154 ~~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r- 226 (445)
T PRK11357 154 TLITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE----IKNPGK- 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH----hcCccc-
Confidence 6666554443332222211 1211 111110000 11123567888899999999999999999998 899998
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHh
Q 013753 254 LMWKGALGAYFVNAICYFPVALIGY 278 (437)
Q Consensus 254 ~~~~~~~~~~~~~~~~Y~~~g~~gy 278 (437)
+++|++..+..++.++|++......
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998776544
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.77 E-value=3.8e-16 Score=156.78 Aligned_cols=358 Identities=12% Similarity=0.035 Sum_probs=205.3
Q ss_pred ccCccccCCceeehhhhhhhhccccccchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHH
Q 013753 19 SDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLG 97 (437)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~-a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~ 97 (437)
.+.+.+|+.+.++.....+++++|+|++..|. +.+++|. ..+..+++.+++.......+.|.....+..+ ++.+++
T Consensus 14 ~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~--~~~~ya 90 (469)
T PRK11049 14 AEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYK--SFSDFA 90 (469)
T ss_pred cchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHHHHH
Confidence 34468899999999999999999999999874 6777776 4566777888888888888888876444433 778899
Q ss_pred HHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHH
Q 013753 98 RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 177 (437)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 177 (437)
++.+||..| ++..+..+........+.....+.++..+.+ +.+...+..+... .+-.......+...+++.
T Consensus 91 ~~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p-------~~~~~~~~~~~~~-~~~~iN~~g~~~~~~i~~ 161 (469)
T PRK11049 91 SDLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFP-------DLSDWVASLAVVL-LLLSLNLATVKMFGEMEF 161 (469)
T ss_pred HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 999999777 5666666655544444445555555544332 1222222222112 222222335666666665
Q ss_pred HHHHHHHHHHHHHHHhhhc--cc---cccC----ccccccC-CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCC
Q 013753 178 AAAVMSLSYSTIAWAGSLS--HG---RIEN----VSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTP 247 (437)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~--~~---~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m 247 (437)
+.....+..++++++.... .+ .+.+ .+..++. ...++++.++..++...+|+|.|.+.+....+| +
T Consensus 162 ~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~ 237 (469)
T PRK11049 162 WFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE----T 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH----h
Confidence 5554433332222222111 00 0111 1111111 111345677899999999999999999999999 8
Q ss_pred CCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcC-CCCc---hhhhhcc--CCChHHHHHHHHHHHHHHHHhccccccc
Q 013753 248 EKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG-QDVD---DNVLMAL--KRPGWLIAAANLMVVVHVIGSYQVFAMP 321 (437)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg-~~~~---~~il~~~--~~~~~~~~~~~~~~~~~~~~s~pl~~~~ 321 (437)
|||+| +++|++..+.....++|.+........-+ ++.. ++....+ ...++...+..++.+++.+.+.-.....
T Consensus 238 knP~r-~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 238 KDPEK-SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred cCHhh-HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 89999988888888888876665543322 1111 1111111 1123344455555555555544444444
Q ss_pred HHHHHHHHhhhcC--------CCCCchhhHHHHHHHHHH-HHHHHHhhccchhHHhhhhcc--cccchhHhhhhhhhhhh
Q 013753 322 VFHLLEGMMIKRM--------NFPPGAAVRVVARSAYVA-FTLFVGVTFPFFGDLLGFFGG--FGFTPTSYFLPSIMWLV 390 (437)
Q Consensus 322 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~la~~~p~~~~~~~~~Ga--~~~~~~~~i~P~l~~l~ 390 (437)
..+.+...-+++. + +++.+.+.+.....+. +...+....|+....++..-. .....+.|+++.+.+++
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333211 2 2344555544433322 223333445554334433222 22345788888888888
Q ss_pred hcCC
Q 013753 391 IKKP 394 (437)
Q Consensus 391 ~~~~ 394 (437)
+|++
T Consensus 396 lr~~ 399 (469)
T PRK11049 396 YRKQ 399 (469)
T ss_pred HHHh
Confidence 7654
No 31
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.76 E-value=3.4e-16 Score=156.53 Aligned_cols=354 Identities=14% Similarity=0.118 Sum_probs=213.0
Q ss_pred cCccccCCceeehhhhhhhhccccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 20 DGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
+++.+|+.+.++..+..+++++|+|++..|.. .+++|- ..++.+++.++........+.|...+.|..+ ++.++++
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~ 83 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAY 83 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHH
Confidence 34688999999999999999999999999965 556664 5667778888888888999999988889877 8899999
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLA 178 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (437)
+.+||..| ++..+..++.....+.+.....+++++.+.+ +.+...+..+...+... ......+....++.+
T Consensus 84 ~~~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~i~~~~~~~-lN~~gv~~~~~~~~~ 154 (456)
T PRK10238 84 KYWGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYP-------EIPTWVSAAVFFVVINA-INLTNVKVFGEMEFW 154 (456)
T ss_pred HHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cCcHHHHHHHHHHHHHH-HHHHhHHHHHHHHHH
Confidence 99999766 6777777777766667766666666654432 12222222222222111 222245555556655
Q ss_pred HHHHHHHHHHHHHH---hhhcccc-cc--CccccccCC-CchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCc
Q 013753 179 AAVMSLSYSTIAWA---GSLSHGR-IE--NVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (437)
Q Consensus 179 ~~~~~~~~~~i~~~---~~~~~~~-~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~ 251 (437)
...+.+..++++++ .....+. .+ ..+..+++. ..++++.++..++....|+|.|.+.+....+| +|||+
T Consensus 155 ~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE----~knP~ 230 (456)
T PRK10238 155 FAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAE----ADNPE 230 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHh----hcChh
Confidence 54443332222111 1111111 11 111111111 11345667888888999999999999999998 89998
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHh--hhcCCC--Cchh---hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHH
Q 013753 252 KILMWKGALGAYFVNAICYFPVALIGY--WAFGQD--VDDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (437)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy--~~fg~~--~~~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~ 324 (437)
| ++||++..+.....++|+..-.... .-..+. ..++ ++.+... .+...+......+..+.+..-......|
T Consensus 231 r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR 308 (456)
T PRK10238 231 Q-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSR 308 (456)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999999888888888875433322 111111 1111 1222222 3444455555566655555545555555
Q ss_pred HHHHHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHH-hhcc--chhHHhhhhcccccchhHhhhhhhhhhhhcC
Q 013753 325 LLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVG-VTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 393 (437)
Q Consensus 325 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la-~~~p--~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~ 393 (437)
.+...-+++ .+ +++.+.+.+.....+.....+. ...| .++.++++.+ .+..+.|.+|.+.+++.||
T Consensus 309 ~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 385 (456)
T PRK10238 309 MLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRR 385 (456)
T ss_pred HHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 554443322 12 2345555554444333222222 1223 3666666644 3456999999999999876
Q ss_pred C
Q 013753 394 P 394 (437)
Q Consensus 394 ~ 394 (437)
+
T Consensus 386 ~ 386 (456)
T PRK10238 386 A 386 (456)
T ss_pred H
Confidence 4
No 32
>PRK10836 lysine transporter; Provisional
Probab=99.76 E-value=4.3e-16 Score=157.25 Aligned_cols=353 Identities=12% Similarity=0.076 Sum_probs=198.7
Q ss_pred CccccCCceeehhhhhhhhccccccchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~-a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 99 (437)
++.+|+.+.++..+..+++++|+|++.+|. +.+++|....+..+++.+++....+..+.|...+.|..+ +...++++
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~ 88 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQN 88 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHH
Confidence 457889999999999999999999999995 566777544688888999999999999999999999877 88899999
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (437)
.+|+..| ++..+..+...... .+.....+.. .+..+.. +.+...+..+...+.. .....+.+..+.++.+.
T Consensus 89 ~~g~~~g-f~~Gw~~~~~~~~~-~a~~~~a~~~---~~~~~~~---~~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 89 YVEEGFG-FALGWNYWYNWAVT-IAVDLVAAQL---VMSWWFP---DTPGWIWSALFLGVIF-LLNYISVRGFGEAEYWF 159 (489)
T ss_pred HcChHHH-HHHHHHHHHHHHHH-HHHHHHHHHH---HhhhcCC---CCchHHHHHHHHHHHH-HHHHHcchhhhhhHHHH
Confidence 9999877 45555545432222 2211111111 1111111 1111222222222222 22222444444443333
Q ss_pred HHHHHHHHHH------HHHhhhccccc-cCcc-ccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCc
Q 013753 180 AVMSLSYSTI------AWAGSLSHGRI-ENVS-YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (437)
Q Consensus 180 ~~~~~~~~~i------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~ 251 (437)
....+..++. ........+.. .+.+ ......+.++++.++..+.....|+|.|.+.+....+| .|||+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP~ 235 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE----SEDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH----hcCHH
Confidence 3222211111 11111111111 0111 10001111234566666777778999999999999998 89998
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCch---------------hhhhccCCChHHHHHHHHHHHHHHHHhcc
Q 013753 252 KILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD---------------NVLMALKRPGWLIAAANLMVVVHVIGSYQ 316 (437)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~---------------~il~~~~~~~~~~~~~~~~~~~~~~~s~p 316 (437)
| ++||++..++..+.++|++.........+.+..+ ....+.. ..+...+...+.+++.+.+..
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g-~~~~~~ii~~~il~a~~~~~n 313 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAG-LLSAAAVMNAVILTAVLSAGN 313 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999999999998876654444321111 0111111 122334445555556665555
Q ss_pred cccccHHHHHHHHhhhcC--------CCCCchhhHHHHHHHHHHHHHHHHhhccc---hhHHhhhhcccccchhHhhhhh
Q 013753 317 VFAMPVFHLLEGMMIKRM--------NFPPGAAVRVVARSAYVAFTLFVGVTFPF---FGDLLGFFGGFGFTPTSYFLPS 385 (437)
Q Consensus 317 l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~~p~---~~~~~~~~Ga~~~~~~~~i~P~ 385 (437)
......-|.+..+-+++. | +++.+.+.+.....+.....+....++ +..+.++.+. ...+.|++.+
T Consensus 314 ~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~--~~~~~y~~~~ 390 (489)
T PRK10836 314 SGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGM--TGFIAWLGIA 390 (489)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 455555555544433221 2 234455554443333322222222222 3344555443 4568888888
Q ss_pred hhhhhhcC
Q 013753 386 IMWLVIKK 393 (437)
Q Consensus 386 l~~l~~~~ 393 (437)
+.+++.||
T Consensus 391 ~a~l~~R~ 398 (489)
T PRK10836 391 ISHYRFRR 398 (489)
T ss_pred HHHHHHHH
Confidence 88888876
No 33
>PRK10746 putative transport protein YifK; Provisional
Probab=99.76 E-value=6.6e-16 Score=154.45 Aligned_cols=356 Identities=12% Similarity=0.076 Sum_probs=212.4
Q ss_pred ccccCCceeehhhhhhhhccccccchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~-a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
+.+|+.+.++..+..++++||+|++..|. +.+.+|. ..++..++.+++.......+.|...+.|..+ ++.++++++
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~ 83 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRY 83 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 46788999999999999999999999884 4667775 4667778888888999999999988888876 899999999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
+||++| +.+.+..++.......+.....+.+++.+.+. .+...+..+...+... ......+..+.++....
T Consensus 84 ~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------~~~~~~~~~~~~~~~~-lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 84 MSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------MAQWIPALIAVALVAL-ANLAAVRLYGEIEFWFA 154 (461)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CchHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 999888 56777777666655566666556555544321 2222222222222222 22224444444443333
Q ss_pred HHHHHHHHHHHH-----hhhccccc---cCccccccC-CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCc
Q 013753 181 VMSLSYSTIAWA-----GSLSHGRI---ENVSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (437)
Q Consensus 181 ~~~~~~~~i~~~-----~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~ 251 (437)
...+..+++.++ .....+.. .+.++..++ ...++++.++..++...+|+|.|.+.+....+| .|||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E----~knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE----AKNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH----hcChh
Confidence 322221111111 11111111 111111111 112346788999999999999999999999998 89999
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCC-Cc---hhhh---hccCCChHHHHHHHHHHHHHHHHhcccccccHHH
Q 013753 252 KILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD---DNVL---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (437)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~~---~~il---~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~ 324 (437)
| ++||++..+...+.++|+..........+.+ .. ++.. .+.. .+....+.+.+..++.+.+....++...+
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR 308 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGR 308 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999999999997655544444322 11 1211 2221 12333455556666666665555555555
Q ss_pred HHHHHhhhcC-------CCCCchhhHHHHHHHH-HHHHHHHHhhccchhHHhhhhcc--cccchhHhhhhhhhhhhhcCC
Q 013753 325 LLEGMMIKRM-------NFPPGAAVRVVARSAY-VAFTLFVGVTFPFFGDLLGFFGG--FGFTPTSYFLPSIMWLVIKKP 394 (437)
Q Consensus 325 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~la~~~p~~~~~~~~~Ga--~~~~~~~~i~P~l~~l~~~~~ 394 (437)
.+..+-+++. ..+++.+.+.+..... ..+...+....|+-+.+++...+ .....+.|+++++.++|.||+
T Consensus 309 ~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 309 MLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555543321 0133445554433222 22223333344544444333322 223568899999999998765
Q ss_pred C
Q 013753 395 K 395 (437)
Q Consensus 395 ~ 395 (437)
+
T Consensus 389 ~ 389 (461)
T PRK10746 389 H 389 (461)
T ss_pred c
Confidence 3
No 34
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.76 E-value=1.1e-16 Score=151.81 Aligned_cols=354 Identities=15% Similarity=0.130 Sum_probs=243.7
Q ss_pred CccccCCceeehhhhhhhhcccccc-chHHHHHHhcChhHHHH-HHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGV-LSLPYAMAYLGWGPGTM-VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gi-l~lP~a~~~~G~~~g~~-~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
.+.+|..+.++.-+.-++..||+|. +.-..+.+.+| |+++ ..++.+++.++-++.+.|+...+|+.+ ++.++++
T Consensus 9 ~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~ 84 (462)
T COG1113 9 QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYAR 84 (462)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHH
Confidence 4578889999999999999999995 67888899999 4544 457888999999999999988888876 9999999
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHh--hcCCCcchhhHHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFL--SQLPDINSVSSVS 176 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~~~s 176 (437)
+++||+.| ++..+.++......+++-...++.+++.+++. .+++.+.+....+...+ ...|...++.+.-
T Consensus 85 ~~lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWf 156 (462)
T COG1113 85 KYLGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------VPQWVFALAAVVLLLAVNLISVKVFGELEFWF 156 (462)
T ss_pred HHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877 68999999999999999999999999998874 23344444443333333 3355566665443
Q ss_pred HHHHHHHHHHHHHHHHhhh---cccc--ccCccccccC-CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 177 LAAAVMSLSYSTIAWAGSL---SHGR--IENVSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~---~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
.+..+..++..+++-.+.+ ...+ ..+.+.-+++ ...++++.++..++...+|||.|.+.+---.+| .|||
T Consensus 157 AlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E----t~dP 232 (462)
T COG1113 157 ALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE----AKDP 232 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh----hcCh
Confidence 3333322222222222221 1111 1122222222 235788999999999999999998877777777 8999
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHH-----HHhhhcCCCCchhhhhccC--CChHHHHHHHHHHHHHHHHhcccccccHH
Q 013753 251 SKILMWKGALGAYFVNAICYFPVAL-----IGYWAFGQDVDDNVLMALK--RPGWLIAAANLMVVVHVIGSYQVFAMPVF 323 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~-----~gy~~fg~~~~~~il~~~~--~~~~~~~~~~~~~~~~~~~s~pl~~~~~~ 323 (437)
+| .++|++.....-..++|+.-=. .-+-.+++ ..++...-+. .-++...+.+..+..+.++++---.+..-
T Consensus 233 ~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~-~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglysts 310 (462)
T COG1113 233 EK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGE-DGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTS 310 (462)
T ss_pred hh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCC-CCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccc
Confidence 98 7899999888888888884333 33333333 3334444332 22455566777788888888888888888
Q ss_pred HHHHHHhhhcCC-------CCCchhh-HHHHHHHHHHHHHHHHhhccc--hhHHhhhhcccccchhHhhhhhhhhhhhcC
Q 013753 324 HLLEGMMIKRMN-------FPPGAAV-RVVARSAYVAFTLFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 393 (437)
Q Consensus 324 ~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~la~~~p~--~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~ 393 (437)
+++..+-.++.- .++.-+. -.+...+...+..++....|+ |..+.+..+.. ....+.+=.+.|+|.||
T Consensus 311 RmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 311 RMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRK 388 (462)
T ss_pred hHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 888877543321 1222233 334566667788888888884 55666654443 45667777888999988
Q ss_pred C
Q 013753 394 P 394 (437)
Q Consensus 394 ~ 394 (437)
.
T Consensus 389 ~ 389 (462)
T COG1113 389 A 389 (462)
T ss_pred c
Confidence 3
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.75 E-value=8.3e-16 Score=155.80 Aligned_cols=250 Identities=11% Similarity=0.080 Sum_probs=156.4
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHH-HHhcChh-HHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWG-PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~-~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
.+.+|+.+.++.....+++++|+|++..|.. .+++|-. ..++.+++.++........+.|...+.|+.+ ....+.+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 3578889999999999999999999999866 4556632 2235566777888888899999988888776 7888899
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHH-HHHHhccCCCcccchhhHHHHH--HHHHHhhcCCCcchhhHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK-FVEMACSHCKPLRQTFWILIFG--SLHFFLSQLPDINSVSSV 175 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~ 175 (437)
+.+||+.|....+........+.+..+....++++.+ +.+. . ..+.....++.. ++..-.......+...++
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----~-~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----C-EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C-CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999987754333222222223344444444444322 1111 0 111111122222 222222223466777777
Q ss_pred HHHHHHHHHHHHHHHHHhhh---ccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcc
Q 013753 176 SLAAAVMSLSYSTIAWAGSL---SHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (437)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~ 252 (437)
+.+.....+..+++.++..+ ..+..++.+....-....++..++..++...+|+|.|.+.+....+| +|||+|
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E----~knP~r 266 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEE----VKNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHH----hcCchh
Confidence 77666655543333322221 12211111110000011134667888999999999999999999998 899988
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHHHhhhcC
Q 013753 253 ILMWKGALGAYFVNAICYFPVALIGYWAFG 282 (437)
Q Consensus 253 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 282 (437)
+++|++..+..++.++|++..+......+
T Consensus 267 -~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 267 -TLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999998766544443
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.75 E-value=6.9e-16 Score=154.10 Aligned_cols=353 Identities=14% Similarity=0.131 Sum_probs=206.0
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
.+.+|+.|.++.....++.++|......+.+.+..|+..-....++.++........+.|...+.|+.+ +...++++.
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~ 80 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRA 80 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 457888999999999999999854566678888888864455666677777777888999988898876 888899999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
+||+.| ++..+..++.......++....++++..+++.. +.....++.. +.+-....+..+..++++.+..
T Consensus 81 ~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~~~~-~~~~~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 81 FGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAALVFY-IVFIGINILGVGEAAKLEFVVT 151 (442)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Confidence 999777 566667777766677777777777776665421 1122222111 1122222335566666655554
Q ss_pred HHHHHHHHHHHHhhhccccccCc-ccccc--CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhh
Q 013753 181 VMSLSYSTIAWAGSLSHGRIENV-SYAYK--HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWK 257 (437)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~ 257 (437)
+..++.+.+.......+.+..+. ..... +...+..+.++..++...+|+|.|++.+....+| +|||+| +++|
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~ipr 226 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE----TKNPKR-DIPR 226 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCccc-ccCH
Confidence 43333322222211111111110 00000 0111234567888899999999999999999998 899998 8999
Q ss_pred hhHHHHHHHHHHHHhHHHHHhhhcCC-C---Cchhh---hhcc-CCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 013753 258 GALGAYFVNAICYFPVALIGYWAFGQ-D---VDDNV---LMAL-KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (437)
Q Consensus 258 ~~~~~~~~~~~~Y~~~g~~gy~~fg~-~---~~~~i---l~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 329 (437)
++..+..++.++|+.........-+. + .+++. .... .+..+...+..+...+..+.+.........+.+...
T Consensus 227 ai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ 306 (442)
T TIGR00908 227 GLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFAL 306 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764433211110 0 11111 1111 222233334444444444444433333344444443
Q ss_pred hhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCC
Q 013753 330 MIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 330 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~ 395 (437)
-+++ .| +++.+.+.......+.... . ...+...+.++.+ ....+.|+++.+.++++|+++
T Consensus 307 ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~--~-l~~~~~~l~~~~~--~~~~~~y~~~~~a~i~lr~~~ 374 (442)
T TIGR00908 307 SRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGL--S-LTGQTALIILVSV--FGAIISYVLSMAAHFTLRIRR 374 (442)
T ss_pred HhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHH--H-HhccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 3221 13 3445555554433332222 1 2234445554433 345688888988888877543
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.74 E-value=1.7e-15 Score=151.71 Aligned_cols=353 Identities=12% Similarity=0.142 Sum_probs=203.7
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 99 (437)
.+.+|+.+.++..+..+++++|+|++.+|.. .+.+|. ..++.+++.+++.......+.|...+.|..+ +..+++++
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~ 81 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQE 81 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 3577889999999999999999999999866 556665 4688888889999999999999998888776 88889999
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (437)
.+||..| ++..+..++.....+.......+.+++.+.+ +.+...+.+... +..-....+..+....++...
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~l~~~ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP-------TVPHWIWVLSVV-LIICAVNLMSVKVFGELEFWF 152 (457)
T ss_pred HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCChHHHHHHHH-HHHHHHHHccchhHHHHHHHH
Confidence 9999877 4566665655544444444444444433322 122222222222 222223334556666666554
Q ss_pred HHHHHHHHHHHHHh-------hhccc-cccCccccccC-CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 180 AVMSLSYSTIAWAG-------SLSHG-RIENVSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 180 ~~~~~~~~~i~~~~-------~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
....+..+++.++. ..... .+.+.+..+++ ...++++.++..++....|+|.|.+......+| .|||
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E----~knP 228 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE----AKDP 228 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH----hcCh
Confidence 44333322221111 11111 11111111111 112345667888999999999999999999998 8999
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhhhcC-CCCc---hhh---hhccCCChHHHHHHHHHHHHHHHHhcccccccHH
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFG-QDVD---DNV---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVF 323 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg-~~~~---~~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~ 323 (437)
+| +++|++..+...+.++|+..........+ ++.. ++. .+... ..+...+..+...+..+.+.........
T Consensus 229 ~k-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (457)
T PRK10580 229 EK-SIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMG-ITFAASILNFVVLTASLSAINSDVFGVG 306 (457)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 89999998888888888877555432222 1111 111 12222 1233344444444455544433333434
Q ss_pred HHHHHHhhhc--------CCCCCchhhHHHHHHHHH-HHHHHHHhhccc--hhHHhhhhcccccchhHhhhhhhhhhhhc
Q 013753 324 HLLEGMMIKR--------MNFPPGAAVRVVARSAYV-AFTLFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIK 392 (437)
Q Consensus 324 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~la~~~p~--~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~ 392 (437)
+.+..+-+++ .| +++.+.+.+...... .+...+....|+ +..+.++.+. ...+.|+++++.++++|
T Consensus 307 R~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 307 RMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATF--ATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4443333221 12 234455544333222 122222223332 3344444332 34588999999999887
Q ss_pred CC
Q 013753 393 KP 394 (437)
Q Consensus 393 ~~ 394 (437)
|+
T Consensus 384 ~~ 385 (457)
T PRK10580 384 RR 385 (457)
T ss_pred HH
Confidence 54
No 38
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.72 E-value=6.5e-15 Score=148.60 Aligned_cols=350 Identities=13% Similarity=0.101 Sum_probs=204.7
Q ss_pred ccCCceeehhhhhhhhccccccchHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCC-cccCCHHHHHHHHh
Q 013753 24 TRRAKWWYSTFHCVTAMIGAGVLSLP-YAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPG-VRFDRYIDLGRHAF 101 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~Gil~lP-~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~~~~~~~ 101 (437)
+|+++.++..+..++.++|+|++..| .+.+++|....+..+++.+++.......+.|...+.|+ .+ .|.+++++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 47789999999999999999998877 55667774334667788888888999999999888884 33 6888999999
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
||+.| ++..+..++.....+.+.....+.++..+.+ +.+...+..+.. +..-+...+..+..++++.....
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------KVNPAVWIAIFY-VFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence 99888 5666666666666666666655555543221 122223332222 22222334456666666655543
Q ss_pred HHHHHHHHHH---HhhhccccccCc--c--c-ccc-CCCch---hhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCC
Q 013753 182 MSLSYSTIAW---AGSLSHGRIENV--S--Y-AYK-HTSSA---DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEK 249 (437)
Q Consensus 182 ~~~~~~~i~~---~~~~~~~~~~~~--~--~-~~~-~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~ 249 (437)
..+..++..+ +.....+..++. . . ..+ ...+. +.+.++..++...+|+|.|.+......+| .||
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~kn 225 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE----AAN 225 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh----hcC
Confidence 3322211111 111111111100 0 0 000 01111 13677888999999999999999999998 899
Q ss_pred CcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCc-------------hhh---hhccCCChHHHHHHHHHHHHHHHH
Q 013753 250 PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD-------------DNV---LMALKRPGWLIAAANLMVVVHVIG 313 (437)
Q Consensus 250 p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~-------------~~i---l~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
|+| +++|++..+...+.++|.+..+......+.+.. ++. ..+.. .++...+..++.+++.+.
T Consensus 226 P~r-~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~~ 303 (478)
T TIGR00913 226 PRK-SIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHG-IKVLPHIFNAVILISVLS 303 (478)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcC-CchHhHHHHHHHHHHHHH
Confidence 998 899999999999999999876543333331110 111 11121 123444455555555555
Q ss_pred hcccccccHHHHHHHHhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhhc---cchhHHhhhhcccccchhHhh
Q 013753 314 SYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTF---PFFGDLLGFFGGFGFTPTSYF 382 (437)
Q Consensus 314 s~pl~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~~---p~~~~~~~~~Ga~~~~~~~~i 382 (437)
+.--......+.+...-+++ .+ +++.+.+.+.....+....++.... ..++.+.++.+. ...+.|+
T Consensus 304 ~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~--~~~i~y~ 380 (478)
T TIGR00913 304 AANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGL--SGFFTWM 380 (478)
T ss_pred HHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH--HHHHHHH
Confidence 55444444444444433321 12 3344555554433332221121111 124555555433 4568899
Q ss_pred hhhhhhhhhcC
Q 013753 383 LPSIMWLVIKK 393 (437)
Q Consensus 383 ~P~l~~l~~~~ 393 (437)
++++.+++.||
T Consensus 381 ~~~~~~i~~r~ 391 (478)
T TIGR00913 381 CICLSHIRFRK 391 (478)
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 39
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.71 E-value=2e-14 Score=153.22 Aligned_cols=247 Identities=13% Similarity=0.126 Sum_probs=164.0
Q ss_pred ccccCCceeehhhhh-hhhccccccch-HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhc-cCCcccCCHHHHHH
Q 013753 22 EPTRRAKWWYSTFHC-VTAMIGAGVLS-LPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC-VPGVRFDRYIDLGR 98 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l-~~~~iG~Gil~-lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~-~~~~~~~~y~~~~~ 98 (437)
.+.++.|++++++.- +.+++|+|++. +++...++|...+++.+++.++++..+...+.+.... .+..+ .-..+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHH
Confidence 356789999999999 99999999866 5577779998778899999999999999999998775 55544 5567788
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCC--Ccc-cchhhHHHHHHHHHHhhcCCCcchhhHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC--KPL-RQTFWILIFGSLHFFLSQLPDINSVSSV 175 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 175 (437)
+++||.+| ..+.++.++.....+..|.+..++++..+++...... ... +.+.+..+..+++.. ......+..+++
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~-In~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLG-ISFAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHH-HHHhhHHHHHHH
Confidence 99999887 4666677777777888888888888888775421100 001 112211212222222 223355555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCcccc--------cc-C-CCc-hhhHhHHHHHHHHHHHHhcCCcchHhhhhhCC
Q 013753 176 SLAAAVMSLSYSTIAWAGSLSHGRIENVSYA--------YK-H-TSS-ADYMFRVFNALGQISFAFAGHAVALEIQATIP 244 (437)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~-~-~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~ 244 (437)
+.+.+++.++.++.+++..+.... +..... .. . .+. +....++...++++++||.|......+.+|
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~-~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE-- 305 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAF-DKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD-- 305 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCC-CCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 555555433333333332221110 000000 00 0 011 112234778889999999999999888888
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHh
Q 013753 245 STPEKPSKILMWKGALGAYFVNAICYFPVALIGY 278 (437)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 278 (437)
+|||+| ++||++..++.+++++|+++.+...
T Consensus 306 --lKnP~r-~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 306 --LKDPQK-AIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred --ccChhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998 8999999999999999999876433
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.69 E-value=1.5e-14 Score=144.33 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=204.4
Q ss_pred hhhhhccccccchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcchhhH
Q 013753 35 HCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQ 113 (437)
Q Consensus 35 ~l~~~~iG~Gil~lP~-a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~~ 113 (437)
..+++++|+|++..|. +.+++|. ..++.+++.+++.......+.|...+.|..+ +..+++++.+||+.| ++..+.
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~ 77 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWL 77 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHH
Confidence 3578999999999886 6778886 4888888999999999999999998888876 889999999999877 566666
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 013753 114 QLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAG 193 (437)
Q Consensus 114 ~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 193 (437)
.++.....+.......+..+..+.+ +.+...+.. ..++.+-+....+.+..+.++.+.....++.++..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWVP-------GIPIWLFSL-VITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-------cCcHHHHHH-HHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6665554444444333333322211 111111111 12222222223355666666666555444333332222
Q ss_pred hh--cccccc-----Ccccccc-CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHH
Q 013753 194 SL--SHGRIE-----NVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFV 265 (437)
Q Consensus 194 ~~--~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~ 265 (437)
.+ ..+..+ +.+..++ ....++++.++..++...+|+|.|.+.+....+| +|||+| +++|++..+...
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~ 224 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAE----SDTPEK-HIVRATNSVIWR 224 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChhh-hHHHHHHHHHHH
Confidence 11 111111 1000011 1112346778999999999999999999999998 899998 899999999999
Q ss_pred HHHHHHhHHHHHhhhcCCCC-c----h---hhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhcC---
Q 013753 266 NAICYFPVALIGYWAFGQDV-D----D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM--- 334 (437)
Q Consensus 266 ~~~~Y~~~g~~gy~~fg~~~-~----~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~--- 334 (437)
+.++|++..+......+.+. + + ....... .++...+.....+++.+.+..-......|.+..+-+++.
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 99999987666433332111 1 1 1222332 234555566666666666666666666565555443221
Q ss_pred -----CCCCchhhHHHHHHHHHHHH-HHHHhhcc--chhHHhhhhcccccchhHhhhhhhhhhhhcC
Q 013753 335 -----NFPPGAAVRVVARSAYVAFT-LFVGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 393 (437)
Q Consensus 335 -----~~~~~~~~~~~~~~~~~~~~-~~la~~~p--~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~ 393 (437)
+ +++.+.+.+.....+... .+.....| .++.++++.+... .+.|.++++.++++||
T Consensus 304 ~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 304 VMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2 334555555443333222 22222222 4677777766554 4889999999888876
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.68 E-value=7.6e-15 Score=146.09 Aligned_cols=351 Identities=17% Similarity=0.148 Sum_probs=217.1
Q ss_pred CceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHhhchhccCCcccCCHHHHHHHHhCCCc
Q 013753 27 AKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT-LNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL 105 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 105 (437)
+|+++.+...++.++|+|++..| ...+.|.. .++..++.+.+. ......+.|..++.|+.+ +..++.++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 46788999999999999999999 66666653 666666666666 677888888877788776 88999999999988
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHH--HHHHHHhhcCCCcchhhHHHHHHHHHH
Q 013753 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIF--GSLHFFLSQLPDINSVSSVSLAAAVMS 183 (437)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~--~~i~~pl~~~~~l~~l~~~s~~~~~~~ 183 (437)
| ++..+..++.......++.....+++...++... ..++.....+. .++..-....+..+..++++.....+.
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDL----NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG----TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhcccccc----ccccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 7 5666666777666666666666666654443200 01111222222 222233333446777777777777765
Q ss_pred H-HHHHHHHHhhhccccccCcc---ccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhh
Q 013753 184 L-SYSTIAWAGSLSHGRIENVS---YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGA 259 (437)
Q Consensus 184 ~-~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~ 259 (437)
+ ..+++.++..+...+.+... ... +...++.+.++..++...+|+|.|.+....+.+| +|| | +++|++
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k~--k-~ip~ai 223 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSL-STFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEE----NKN--K-TIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SH-SCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGG----SSS--H-HHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccc-cccCCccccchhhHHHHHHhhccccccccccccc----ccc--h-hheeec
Confidence 5 33333333333222111111 011 1112334455789999999999999999999998 676 3 788999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcCCCCch---h-------hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 013753 260 LGAYFVNAICYFPVALIGYWAFGQDVDD---N-------VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (437)
Q Consensus 260 ~~~~~~~~~~Y~~~g~~gy~~fg~~~~~---~-------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 329 (437)
..+..++.++|.+.........+++..+ + ..+... .++...+..+...+..+.+....+....+.+..+
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhccccc
Confidence 9999999999999988877776543211 1 111111 2356666667777777777777777777777766
Q ss_pred hhhcC--------CCCCchhhHHHHHHHHHHHHHHHHh-hcc--chhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCC
Q 013753 330 MIKRM--------NFPPGAAVRVVARSAYVAFTLFVGV-TFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS 398 (437)
Q Consensus 330 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~-~~p--~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~ 398 (437)
-+++. | +++.+.+.......+.....+.. ..| ++..+.+.... ...+.++++.+.+++.|++++..
T Consensus 303 a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 303 ARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSV--GYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp HHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHH--HTHHHHHHHHHHHHHTHHHSCSS
T ss_pred ccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcCCc
Confidence 65432 2 34445554443333332222222 223 45666665433 34577788887777776655443
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.66 E-value=5.9e-15 Score=143.36 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=186.4
Q ss_pred cCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCC
Q 013753 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (437)
Q Consensus 25 ~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~ 104 (437)
+|+|.+|..+.++++++|+|++.+|....+.+.-.+++..++.++........+.+..++.|++ +..++.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3678899999999999999999999988776666899999999999999999999999888875 8999999999998
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHH-HHHHHHHHhhcCCCcchhhHHHHHHHHHH
Q 013753 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWIL-IFGSLHFFLSQLPDINSVSSVSLAAAVMS 183 (437)
Q Consensus 105 ~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 183 (437)
.|+. ..+....+............++.+.... .. +.+.+.. +..++..-....++++..++++.+.....
T Consensus 78 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~ 148 (359)
T TIGR00912 78 LGRL-LSILFILYFFLIAAYLIRIFADFIKTYL----LP----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIF 148 (359)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 7754 4445555544444333333333332221 11 1123322 22333333344568888888888877655
Q ss_pred HHH-HHHHHHhhhccccccCccccccCCCchhhHhHHHHHHH-HHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHH
Q 013753 184 LSY-STIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG-QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALG 261 (437)
Q Consensus 184 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~ 261 (437)
+.. ..++........+.++.. +..++++.++..+.. ...++|.+.+......++ +|||+| .+|+...
T Consensus 149 i~~~~~il~~~~~~~~~~~~l~-----P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~----~~~~~~--~~k~~~~ 217 (359)
T TIGR00912 149 LILFILVLILLAPKLGNIKNLL-----PVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPL----LSKKKK--IKKSIIK 217 (359)
T ss_pred HHHHHHHHHHHhcccccHHHcc-----CccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHH----hCChhh--hHHHHHH
Confidence 444 122222222221111111 122345666665554 888999998888878877 787765 5699999
Q ss_pred HHHHHHHHHHhHHHHHhhhcCCCCch----hhh---hccCCChH---HHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 013753 262 AYFVNAICYFPVALIGYWAFGQDVDD----NVL---MALKRPGW---LIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (437)
Q Consensus 262 ~~~~~~~~Y~~~g~~gy~~fg~~~~~----~il---~~~~~~~~---~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~ 331 (437)
+..++.++|..........+|.+..+ +.. ....-++. .-.+.-.......+.+..+..+...+.+.+.++
T Consensus 218 ~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 218 AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988888854322 111 11111111 112233345566666666777777888888776
Q ss_pred hc
Q 013753 332 KR 333 (437)
Q Consensus 332 ~~ 333 (437)
.+
T Consensus 298 ~~ 299 (359)
T TIGR00912 298 KR 299 (359)
T ss_pred CC
Confidence 54
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.64 E-value=1.2e-13 Score=134.05 Aligned_cols=356 Identities=13% Similarity=0.101 Sum_probs=248.0
Q ss_pred ccccCCceeehhhhhhhhcccccc-chHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGV-LSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gi-l~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
+.+|++...+..+.-++..||+|. ++.-.+..++|-.-.++..++.+.+.+..+..+.|++...|..+ +|..++.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 467889999999999999999995 67889999999888888889999999999999999998888655 799999999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhc--CCCcchhhHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDINSVSSVSLA 178 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~~ 178 (437)
.+|-+| +...+.+++.....+....+..+..++.+.+. ..+...|..++.++++.+-+ .|......+.-..
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 999888 68888888888888888888888777777643 23557787777666665554 5556655444333
Q ss_pred HHHHHHHHHHHHH---Hhhhccccc-cCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc
Q 013753 179 AAVMSLSYSTIAW---AGSLSHGRI-ENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (437)
Q Consensus 179 ~~~~~~~~~~i~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (437)
.-++.++..+++. ......++. -+..+-.++....+++.++...+-+..|+|.|.+.+---..| -+||+| .
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE----s~nP~K-~ 266 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE----SENPRK-S 266 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc----cCCchh-h
Confidence 3332222212211 111111111 111221222234567999999999999999998877666666 899998 8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHH-HhhhcCCC-----------CchhhhhccCC--ChHHHHHHHHHHHHHHHHhcccccc
Q 013753 255 MWKGALGAYFVNAICYFPVALI-GYWAFGQD-----------VDDNVLMALKR--PGWLIAAANLMVVVHVIGSYQVFAM 320 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~Y~~~g~~-gy~~fg~~-----------~~~~il~~~~~--~~~~~~~~~~~~~~~~~~s~pl~~~ 320 (437)
+||++--.+.-..++|++.-++ |...-.+| ..++....+.+ -..+..+.+.+++++++++---.++
T Consensus 267 iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lY 346 (541)
T COG0833 267 IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLY 346 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccch
Confidence 9999999999999999854433 33222222 12233333321 2456677888888888888888888
Q ss_pred cHHHHHHHHhhhcCC-------CCCchhhHHHHHHHHHHHHHHHHhhcc---chhHHhhhhcccccchhHhhhhhhhhhh
Q 013753 321 PVFHLLEGMMIKRMN-------FPPGAAVRVVARSAYVAFTLFVGVTFP---FFGDLLGFFGGFGFTPTSYFLPSIMWLV 390 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~la~~~p---~~~~~~~~~Ga~~~~~~~~i~P~l~~l~ 390 (437)
..-+.+..+-+++.- .++..+...+..+.++....+++...+ -+..++++.|.. .+++++.=++.|+|
T Consensus 347 asSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shir 424 (541)
T COG0833 347 ASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIR 424 (541)
T ss_pred HHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 888888888765531 234555555555444444444444333 267778887755 45888888899999
Q ss_pred hcC
Q 013753 391 IKK 393 (437)
Q Consensus 391 ~~~ 393 (437)
.||
T Consensus 425 FR~ 427 (541)
T COG0833 425 FRR 427 (541)
T ss_pred HHH
Confidence 876
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.63 E-value=1.9e-13 Score=137.73 Aligned_cols=362 Identities=16% Similarity=0.190 Sum_probs=221.8
Q ss_pred cCccccCCceee-hhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 20 DGEPTRRAKWWY-STFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 20 ~~~~~~~~~~~~-~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
+++.+|+.+.++ ......+.++|.|++.+|......+ ......+++.+.+.......+.|...+.|+.+ .+.++.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~ 83 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAK 83 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehh
Confidence 345677788888 8888899999999999998887665 22333356666666677788888877788776 8889999
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHH--HHHhhcCCCcchhhHHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVS 176 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s 176 (437)
+.+||+.| +...+..++.......+.....+..+..+.+..... ......+..+..++ ..-+...+..+..++++
T Consensus 84 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~ 160 (466)
T COG0531 84 RALGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL--SIGPLLIILIALALIALLTLLNLRGIKASAKIN 160 (466)
T ss_pred hhcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh--cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99998777 677777777777777777777776666555531000 00102222222222 22333344677777777
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchh
Q 013753 177 LAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (437)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (437)
.+..+..++..++..+..........................+..++...+++|.|.+......+| +|||+| +++
T Consensus 161 ~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E----~knp~r-~ip 235 (466)
T COG0531 161 SIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEE----VKNPKR-TIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHH----hcCccc-ccc
Confidence 777776665555544443333222211110000002234457889999999999999999999998 899988 689
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCC-Cc-----hhhhhcc--CCChHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQD-VD-----DNVLMAL--KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG 328 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~~-----~~il~~~--~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~ 328 (437)
|++..+...+.++|.+.........+++ .. .+..... ..+.+...+..+...+....+.........|....
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~ 315 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYA 315 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877776642 11 1111111 11134555555566666666654444444444433
Q ss_pred Hhhhc--------CCCCCchhhHHHHHHHHHHHHHHHHhh--ccchhHHhhhhcccccchhHhhhhhhhhhhhcCC
Q 013753 329 MMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVT--FPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 394 (437)
Q Consensus 329 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~la~~--~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~ 394 (437)
+-+++ .|++.+.+.+.......+...+.+... ...+..+.++.. ....+.|.++.+..++.+++
T Consensus 316 ~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 316 MARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLAS--VAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 33322 133333455555443333331111111 123555555543 34568899999998888765
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.59 E-value=4.9e-12 Score=127.41 Aligned_cols=252 Identities=13% Similarity=0.040 Sum_probs=152.1
Q ss_pred CccccCCceeehhhhhhhhc-cccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAM-IGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~-iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
++.+|+.+.++.+..-++.+ +|+|++.++.. ..++|- ..+..+++.++........+.|...+.|..+ ...+.++
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~ 85 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSR 85 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHH
Confidence 45788999999999999875 89999887755 556665 4566677788888888999999998899876 8888999
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhc--cCCCccc---c-hhhHHHHHHH--HHHhhcCCCcc
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC--SHCKPLR---Q-TFWILIFGSL--HFFLSQLPDIN 170 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~--~~~~~~~---~-~~~~~i~~~i--~~pl~~~~~l~ 170 (437)
+.+||+.| ++..+..++.......+........+..+.+... +..+++. . ....++..++ ..-+...+..+
T Consensus 86 ~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999877 4555555554443333333333333333221111 1001111 1 1111222122 22222233566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccccCccccccC---CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCC
Q 013753 171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKH---TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTP 247 (437)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m 247 (437)
...+++.+.....+..++++++......+.++ ...+.. ...+.....+..+.....|+|.|.+.+....+| +
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE----~ 239 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGP-GVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEE----T 239 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHH----h
Confidence 66777666655444333332322222211111 111100 011122344556777788999999999999998 8
Q ss_pred CCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcC
Q 013753 248 EKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 282 (437)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 282 (437)
|||+| ++||++..+..+..++|.+.-+......+
T Consensus 240 knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 240 KNPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred cCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99998 89999999999888777665555444444
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.57 E-value=1.2e-13 Score=138.43 Aligned_cols=361 Identities=12% Similarity=0.069 Sum_probs=235.5
Q ss_pred CccccCCceeehhhhhhhhccccccc-hHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCc-ccCCHHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVL-SLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGV-RFDRYIDLGR 98 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil-~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~-~~~~y~~~~~ 98 (437)
.+.+|+++.++..+.-+++++|+|++ ....+.++.|...-++..++.+.....+...+.|...+.|.. + ++..+++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeee
Confidence 46789999999999999999999975 466778888877677777888899999999999999999974 5 7888899
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHH-HhccCC-CcccchhhHH--HHHHHHHHhhcCCC---cch
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE-MACSHC-KPLRQTFWIL--IFGSLHFFLSQLPD---INS 171 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~-~~~~~~-~~~~~~~~~~--i~~~i~~pl~~~~~---l~~ 171 (437)
+..|+-+| +++.+-+++.....+.+.....+.+++.+.. ...... ++.+...|.. ...++++.+...+- .+.
T Consensus 104 ~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 104 RFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 99999888 6888888999999999999999999998861 000000 1222233332 23333334444443 344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccc---Ccccccc-CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCC
Q 013753 172 VSSVSLAAAVMSLSYSTIAWAGSLSHGRIE---NVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTP 247 (437)
Q Consensus 172 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m 247 (437)
...++.+-+.+.++.+.+++.......+.. +.++..+ ....+..++++..++.+..|+|.|.+.+-...+| .
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E----~ 258 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE----A 258 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh----c
Confidence 434433333333333333333333232211 1111111 1123445899999999999999998888777777 8
Q ss_pred CCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcC-CC--Cchhh--------hhccCCChHHHHHHHHHHHHHHHHhcc
Q 013753 248 EKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG-QD--VDDNV--------LMALKRPGWLIAAANLMVVVHVIGSYQ 316 (437)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg-~~--~~~~i--------l~~~~~~~~~~~~~~~~~~~~~~~s~p 316 (437)
|||+| ++|+++..++..+.++|.+..+.--+.-. ++ ..++. -.+.........+++.+.++.+.++.-
T Consensus 259 kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 259 KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 99998 89999999999999999987765332221 22 22111 112222233345788888888888888
Q ss_pred cccccHHHHHHHHhhhcCC-------CCCchhhHHHHHHHHHHHHHHHHhhcc-----chhHHhhhhcccccchhHhhhh
Q 013753 317 VFAMPVFHLLEGMMIKRMN-------FPPGAAVRVVARSAYVAFTLFVGVTFP-----FFGDLLGFFGGFGFTPTSYFLP 384 (437)
Q Consensus 317 l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~la~~~p-----~~~~~~~~~Ga~~~~~~~~i~P 384 (437)
..+++.-+.+..+.+.+.- .+++++..... +..+...++++... .++.++++.|.- +.+++.+=
T Consensus 338 ~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~--v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~i 413 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVL--VSGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTLV 413 (554)
T ss_pred HHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHH--HHHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHHH
Confidence 8889998888887554321 01122333222 22233333333322 258888887654 56777777
Q ss_pred hhhhhhhcC
Q 013753 385 SIMWLVIKK 393 (437)
Q Consensus 385 ~l~~l~~~~ 393 (437)
++.|++.|+
T Consensus 414 ~~~~i~~R~ 422 (554)
T KOG1286|consen 414 ALSHLRFRY 422 (554)
T ss_pred HHHHeeeee
Confidence 888888765
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.57 E-value=3.6e-12 Score=128.74 Aligned_cols=364 Identities=11% Similarity=0.044 Sum_probs=190.3
Q ss_pred CccccCCceeehhhhhhhhccc--cccch-HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIG--AGVLS-LPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLG 97 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG--~Gil~-lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~ 97 (437)
++.+|+.+.++.+...++. +| +|+.. .+.+..+.|-...+..+++.+++.......+.|...+.|+.+ +..+.+
T Consensus 8 ~~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~ 84 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWS 84 (482)
T ss_pred ceeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHH
Confidence 3577889999988888884 44 56644 445666777654567788888899999999999998899876 889999
Q ss_pred HHHhCCCccCcchhhHHHHHH---HHHHHHHHHhhcccHHHHHHHhccCC-CcccchhhHHHHHHHHH--HhhcCCCcch
Q 013753 98 RHAFGPKLGPWIVLPQQLIVQ---VGCDIVYMVTGGKCLKKFVEMACSHC-KPLRQTFWILIFGSLHF--FLSQLPDINS 171 (437)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~---~~~~~~y~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~i~~--pl~~~~~l~~ 171 (437)
++++|++.|+....+.-+... ...+.+.....++++........+.. ...+......+...+.+ -.......+.
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 999998777665554444443 33333333444444444332211110 00111222222222222 2222234455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc--cccCccccccC---CC--chhhHhHHHHHHHHHHHHhcCCcchHhhhhhCC
Q 013753 172 VSSVSLAAAVMSLSYSTIAWAGSLSHG--RIENVSYAYKH---TS--SADYMFRVFNALGQISFAFAGHAVALEIQATIP 244 (437)
Q Consensus 172 l~~~s~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~ 244 (437)
...++.+..+..++..+++.+...... ..++.+....+ .. ...+...+..++....|+|.|.+......+|
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E-- 242 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE-- 242 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh--
Confidence 555555544433332222222111111 11111111100 00 0111124556667788999999999999998
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCC------Cc-hhh---hhccCCChHHHHHHHHHHHHHHHHh
Q 013753 245 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD------VD-DNV---LMALKRPGWLIAAANLMVVVHVIGS 314 (437)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~------~~-~~i---l~~~~~~~~~~~~~~~~~~~~~~~s 314 (437)
+|||+| +++|++..+..+..++|.+..+......+|. .. ++. ..+.-..++...+......+..+.+
T Consensus 243 --~knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (482)
T TIGR00907 243 --IENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFC 319 (482)
T ss_pred --cCChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 899988 8999999998877665554443333333321 00 111 1111011123333333344444443
Q ss_pred cccccccHHHHHHHHhhhc----------CCCCCchhhHHHHHHHHHHHHHHHHhhc--cchhHHhhhhcccccchhHhh
Q 013753 315 YQVFAMPVFHLLEGMMIKR----------MNFPPGAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFTPTSYF 382 (437)
Q Consensus 315 ~pl~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~la~~~--p~~~~~~~~~Ga~~~~~~~~i 382 (437)
..-.....-|.+..+-+++ .|++++.+.+.+.....+.....+.... +.++.++++.+.. ..+.|.
T Consensus 320 ~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~--~~i~y~ 397 (482)
T TIGR00907 320 AITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVA--LDVSYV 397 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHH
Confidence 3333444334443332221 1222245555554433333222221111 2466777764443 568899
Q ss_pred hhhhhhhhhcCC
Q 013753 383 LPSIMWLVIKKP 394 (437)
Q Consensus 383 ~P~l~~l~~~~~ 394 (437)
+|...+++.+|+
T Consensus 398 ~~~~~~l~~~~~ 409 (482)
T TIGR00907 398 IPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHhcCC
Confidence 999999887664
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.52 E-value=3.7e-12 Score=128.79 Aligned_cols=237 Identities=8% Similarity=-0.046 Sum_probs=129.7
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHH--HHHHHHHhhchhccC-CcccCCHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT--LNTMWQMINLHECVP-GVRFDRYIDLGRH 99 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~--~~s~~~l~~~~~~~~-~~~~~~y~~~~~~ 99 (437)
.+||+|.++.++..+.++.+ +..+| .+++.| ++.+...+.+.+. ........|.....| +++ .....+++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~ 74 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSN 74 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhh
Confidence 45668998888888888764 67888 467788 4555555555554 446788889877665 444 77888999
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHH-HHHH--HHhhcCCCcchhhHHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIF-GSLH--FFLSQLPDINSVSSVS 176 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~~i~--~pl~~~~~l~~l~~~s 176 (437)
++|+++|. +..+..++................+...... ... ..+ .+...+. .++. .-+...+..+...+++
T Consensus 75 a~G~~~Gf-~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--~~~-~~~-~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~ 149 (507)
T TIGR00910 75 TLGERFGF-AAIFFGWFQIAIGFIPMIYFILGALSYILKF--PAL-NED-PIIKFIAALIIFWALAFSQFGGTKRTAKIA 149 (507)
T ss_pred ccCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chh-ccC-cHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999884 5555555544322222211111112222210 000 011 2222222 2222 2222344555555555
Q ss_pred HHHHHHHHHH-HH--HH-HHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcc
Q 013753 177 LAAAVMSLSY-ST--IA-WAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (437)
Q Consensus 177 ~~~~~~~~~~-~~--i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~ 252 (437)
.++.+..... .+ +. .......+.+...+.......+..+..+....+...+|+|.|.+......+| +|||+|
T Consensus 150 ~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E----~knP~r 225 (507)
T TIGR00910 150 KAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINE----LENPGR 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHH----ccCCcc
Confidence 5443311111 11 11 1111122222111111101111111122344555679999999999999998 899988
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHH
Q 013753 253 ILMWKGALGAYFVNAICYFPVALI 276 (437)
Q Consensus 253 ~~~~~~~~~~~~~~~~~Y~~~g~~ 276 (437)
+++|++..+..++.++|.+..+.
T Consensus 226 -~~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 226 -DYPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999875543
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.51 E-value=2.5e-11 Score=122.95 Aligned_cols=241 Identities=13% Similarity=0.070 Sum_probs=137.6
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHhhchhccCC-cccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT-LNTMWQMINLHECVPG-VRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~-~~s~~~l~~~~~~~~~-~~~~~y~~~~~~~ 100 (437)
.+||+|+++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ......+.|...+.|+ .+ .-....+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 4678999999999999999976 568888888853 555555555453 4466788998888886 45 788899999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHH---------hhcccHHHHHHHhccCCCcccch-hhHHHHHHH--HHHhhcCCC
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMV---------TGGKCLKKFVEMACSHCKPLRQT-FWILIFGSL--HFFLSQLPD 168 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~---------~~~~~l~~~~~~~~~~~~~~~~~-~~~~i~~~i--~~pl~~~~~ 168 (437)
+||++|.. ..+..+............ ..+.+..+..+.. +.+.. ...++..+. .+-....+.
T Consensus 80 ~G~~~gf~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~t~vn~~g 153 (496)
T PRK15238 80 VGPKFAFI-GTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL-----GLNSTQVVGILAVIWMILVTFVASKG 153 (496)
T ss_pred cCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh-----cccchHHHHHHHHHHHHHHHHHHccc
Confidence 99998853 322222222211111000 0111111100000 01111 111222222 223333556
Q ss_pred cchhhHHHHHHHHHHHHH----HHHHHHhhhccccc-cC-ccc-cccC--CCchhhHhHHHHHHHHHHHHhcCCcchHhh
Q 013753 169 INSVSSVSLAAAVMSLSY----STIAWAGSLSHGRI-EN-VSY-AYKH--TSSADYMFRVFNALGQISFAFAGHAVALEI 239 (437)
Q Consensus 169 l~~l~~~s~~~~~~~~~~----~~i~~~~~~~~~~~-~~-~~~-~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 239 (437)
.+..++++.++....+.. +++........+.. .+ ... ...+ .+...+..++..++....|+|.|.+.+...
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 233 (496)
T PRK15238 154 INKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGL 233 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 777777776554432221 11111111111111 11 000 0000 011111245777888899999999999999
Q ss_pred hhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhh
Q 013753 240 QATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW 279 (437)
Q Consensus 240 ~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 279 (437)
.+| +|||+| +++|++..+...+.++|.+..+....
T Consensus 234 a~E----~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~~~ 268 (496)
T PRK15238 234 VDK----TENPEK-NFPKGIIIAAIVISIGYSLAIFLWGV 268 (496)
T ss_pred HHh----ccCCCc-cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 899988 89999999999999999986554433
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.48 E-value=1.6e-11 Score=123.67 Aligned_cols=354 Identities=11% Similarity=0.091 Sum_probs=173.5
Q ss_pred cCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHhhchhccCCcccCCHHHHHHHHhCC
Q 013753 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT-LNTMWQMINLHECVPGVRFDRYIDLGRHAFGP 103 (437)
Q Consensus 25 ~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~ 103 (437)
||++.+..++..+.++++ +-.+|.+ ++.|. ..++.+++.+++. .-......|.....|+++ +..+++++++|+
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~ 74 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGA 74 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcCh
Confidence 346666666666666655 5556765 56774 2444455555444 347778889888888766 788899999999
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcc-cchhhH-HHHHHHH--HHhhcCCCcchhhHHHHHH
Q 013753 104 KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPL-RQTFWI-LIFGSLH--FFLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 104 ~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~i~~~i~--~pl~~~~~l~~l~~~s~~~ 179 (437)
++| ++..+..++........-....+..+..+.+.. ...+.. +..+.. .+..++. .-....++.+..+.++.+.
T Consensus 75 ~~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~ 152 (474)
T TIGR03813 75 RWG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA-TVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWG 152 (474)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 888 455555555443222111111111111111100 000011 112222 1222222 2223344566666665543
Q ss_pred HHH-HHHHHHHHHH---hhhccccccCccccccCC-CchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc
Q 013753 180 AVM-SLSYSTIAWA---GSLSHGRIENVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (437)
Q Consensus 180 ~~~-~~~~~~i~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (437)
... .++.+++.++ .....+.....+..+.+. ++..++.....+. .++|+|.|.+.+....+| +|||+| +
T Consensus 153 ~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E----~knP~r-~ 226 (474)
T TIGR03813 153 GIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKD----VDNPDK-N 226 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHh----ccCccc-c
Confidence 221 1111111111 111111111111111111 1112333343333 467899999999999988 899998 8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHhhhcCCCC-c--hh-------hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHH
Q 013753 255 MWKGALGAYFVNAICYFPVALIGYWAFGQDV-D--DN-------VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-~--~~-------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~ 324 (437)
++|++..+..++.++|++..+......+++. . ++ ..... ..++...+..+...+..+.+.........+
T Consensus 227 iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR 305 (474)
T TIGR03813 227 YPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWA-GLSWLGPILAFALAIGVLAGVVTWVAGPSS 305 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987766554444321 1 11 11111 123444444444445555444333333233
Q ss_pred HHHHHhhh--------cCCCCCchhhHHHHHHHHH-HHHHHHHhhccchhHHhhhhccc--ccchhHhhhhhhhhhhhcC
Q 013753 325 LLEGMMIK--------RMNFPPGAAVRVVARSAYV-AFTLFVGVTFPFFGDLLGFFGGF--GFTPTSYFLPSIMWLVIKK 393 (437)
Q Consensus 325 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~la~~~p~~~~~~~~~Ga~--~~~~~~~i~P~l~~l~~~~ 393 (437)
.+...-++ +.| +++.+.+.+.....+ ....++....|+....++...+. ....+.|+++.+.++++|+
T Consensus 306 ~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~ 384 (474)
T TIGR03813 306 GMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRY 384 (474)
T ss_pred HHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322221 112 344566554433332 22222333456654444433322 2334678888888777764
Q ss_pred C
Q 013753 394 P 394 (437)
Q Consensus 394 ~ 394 (437)
+
T Consensus 385 ~ 385 (474)
T TIGR03813 385 S 385 (474)
T ss_pred c
Confidence 3
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.44 E-value=1.4e-11 Score=117.65 Aligned_cols=284 Identities=15% Similarity=0.179 Sum_probs=192.2
Q ss_pred CCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCc
Q 013753 26 RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL 105 (437)
Q Consensus 26 ~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~ 105 (437)
|+|..|....+..+++|+|++.+|....+.+- .|++..++.+........++.+..+++|++ +..|+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 57888999999999999999999999776653 788888888888888888888888888886 99999999999988
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHH-HHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 013753 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWIL-IFGSLHFFLSQLPDINSVSSVSLAAAVMSL 184 (437)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (437)
|+ +..+......+.......-..++.+....- .+.+.+.+ ....+.......++++.+++.+.+.....+
T Consensus 77 g~-ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~ 147 (320)
T PF03845_consen 77 GK-IINLLYILYFLLISALVLREFSEFIKTYLL--------PETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFL 147 (320)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 86 455454555444444444433333333221 11233333 333344444556689999987777766555
Q ss_pred HHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHH
Q 013753 185 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYF 264 (437)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~ 264 (437)
+....+......+.+.++. .+....++.++..+.....+.|.+.....-+.+. .|||+|.+ |....+..
T Consensus 148 i~~~~i~~~~~~~~~~~~l-----~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~----~~~~~~~~--k~~~~~~~ 216 (320)
T PF03845_consen 148 ILLLLILLLSIPNIDWDNL-----LPVLESGIKPILKGSLVISFPFGGIEILLFLFPF----VKDKKKLK--KSLLIAIL 216 (320)
T ss_pred HHHHHHHHHhcccCCHHHe-----eCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCchHHH--HHHHHHHH
Confidence 5544444444332222221 2233567888999988999999998888888887 78877654 99999999
Q ss_pred HHHHHHHhHHHHHhhhcCCCCch----hhhh---ccCCC---hHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc
Q 013753 265 VNAICYFPVALIGYWAFGQDVDD----NVLM---ALKRP---GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (437)
Q Consensus 265 ~~~~~Y~~~g~~gy~~fg~~~~~----~il~---~~~~~---~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 333 (437)
...++|...-+.....||.+..+ +... ..+-+ +..-.+.-.........+..+..+...+.+.+.++.+
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999854322 2211 11111 1122233334556666667777788888888888654
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.36 E-value=2.8e-12 Score=129.47 Aligned_cols=344 Identities=17% Similarity=0.188 Sum_probs=196.4
Q ss_pred hhhhhhccccccc-hHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcchhh
Q 013753 34 FHCVTAMIGAGVL-SLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLP 112 (437)
Q Consensus 34 ~~l~~~~iG~Gil-~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~ 112 (437)
+..++.++|+|++ ..+.+..+.|....++..++.+++.......+.|+.++.|..+ ++.+++++.+||+.|. ...+
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~Gf-~~gw 80 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALGF-AAGW 80 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCCc-eeeH
Confidence 4457888999964 4677888999876788889999999999999999998888766 8899999999999884 5666
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHH--HHHhccCCCcccchhh----HHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHH
Q 013753 113 QQLIVQVGCDIVYMVTGGKCLKKF--VEMACSHCKPLRQTFW----ILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSY 186 (437)
Q Consensus 113 ~~~~~~~~~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~----~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 186 (437)
..++.............+..++.+ .+... ....+ ..+..+++..+.+. ..+....++.......++.
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLP------STWVWGILIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccccccc------ccccccchhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhH
Confidence 666666666666666555544443 22111 01222 22232232222222 4444444443433333333
Q ss_pred HHHHHHhh-h---ccccccCc-----ccc----ccC---CCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 187 STIAWAGS-L---SHGRIENV-----SYA----YKH---TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 187 ~~i~~~~~-~---~~~~~~~~-----~~~----~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
++..++.. + ..+.+.+. +.. .++ .+...++.++..++...+++|.|.+......+| .|||
T Consensus 154 li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E----~k~P 229 (478)
T PF00324_consen 154 LIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEE----AKNP 229 (478)
T ss_pred hhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccccc----CCCc
Confidence 22222222 1 11111111 000 000 011234888999999999999999988888888 8999
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCchh---------hhhcc--CCChHHHHHHHHHHHHHHHHhccccc
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDN---------VLMAL--KRPGWLIAAANLMVVVHVIGSYQVFA 319 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~---------il~~~--~~~~~~~~~~~~~~~~~~~~s~pl~~ 319 (437)
+| ++||++..+.....++|++.....-...+.+..+. ..... ...++...+.++....+.+.+..-..
T Consensus 230 ~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 230 RK-TIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred hh-hhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 98 89999999999999999988877666665433211 11111 12234444555555555555554444
Q ss_pred ccHHHHHHHHhhhc--------CCCCCchhhHHHHHHHHHHHH-HHHHhhccc--hhHHhhhhcccccchhHhhhhhhhh
Q 013753 320 MPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFT-LFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMW 388 (437)
Q Consensus 320 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~la~~~p~--~~~~~~~~Ga~~~~~~~~i~P~l~~ 388 (437)
+...|.+..+-+++ .+.+++.+.+.+.....+... .++....+. +..+.+. . .......++.-++-+
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~s~ 386 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNI-S-TISNLIVYILINISY 386 (478)
T ss_pred cccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhh-h-hhhhhhHHHhhhhhh
Confidence 44433333322211 122334454444332222222 222222222 1122222 2 234566777777777
Q ss_pred hhhcCC
Q 013753 389 LVIKKP 394 (437)
Q Consensus 389 l~~~~~ 394 (437)
++.||+
T Consensus 387 ~~~r~~ 392 (478)
T PF00324_consen 387 IRFRKK 392 (478)
T ss_pred hhhhhh
Confidence 776654
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.91 E-value=2.8e-07 Score=90.05 Aligned_cols=256 Identities=11% Similarity=0.083 Sum_probs=149.7
Q ss_pred cccCCceeehhhhhh---hhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCV---TAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~---~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 99 (437)
.+|+.++++.+..-. +..-|. .-++++....+|...-.=.+++.+.....+..-++|.+...|..+ +..-.+..
T Consensus 46 f~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa~ 122 (550)
T KOG1289|consen 46 LKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAAV 122 (550)
T ss_pred hhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHHH
Confidence 456666555443322 222110 122444444445332222356667777788888999888888655 55666666
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhc--cCCCcccchhhHHHHHHHHHHhhcCC--CcchhhHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC--SHCKPLRQTFWILIFGSLHFFLSQLP--DINSVSSV 175 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~ 175 (437)
.-+||++++..+++-+...++............-+.++.... +.....++.....+..++.+..+++. .-+.++++
T Consensus 123 lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I 202 (550)
T KOG1289|consen 123 LAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARI 202 (550)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHH
Confidence 778889988888887777776666555544433333333322 22222344444445544444444433 35677777
Q ss_pred HHHHHHHHHHHHHHHHHhhh-ccccc---cCccccccCC----CchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCC
Q 013753 176 SLAAAVMSLSYSTIAWAGSL-SHGRI---ENVSYAYKHT----SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTP 247 (437)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~-~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m 247 (437)
+.+++...++..++.++... ..++. ++.+..+... .+.++...+..++-.-.+.+.|......+.+| -
T Consensus 203 ~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE----~ 278 (550)
T KOG1289|consen 203 NSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEE----T 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHH----h
Confidence 77777755544443333222 11211 1111111111 11223445666677888999999999999999 7
Q ss_pred CCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCc
Q 013753 248 EKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD 286 (437)
Q Consensus 248 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 286 (437)
||++| +.||++..+..+..++=..+-+.-...-+++.+
T Consensus 279 ~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 279 KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 99988 789999999988888877777776677775433
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.88 E-value=2.1e-06 Score=85.66 Aligned_cols=299 Identities=12% Similarity=0.062 Sum_probs=157.5
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHh--cChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAY--LGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~--~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
++|+.++++....-.+..+...-+........ .++.-+++..++..++...-.........|. +. ++..+.|..
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~-Gl---~~~v~sR~~ 85 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY-GL---PFPVLSRAS 85 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh-CC---Ccchhhhhh
Confidence 34444666655555555555444444433332 2333444444444433333333333333322 22 678889999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCccc------chhhHHHHHHHHHHhhcCCCcchhhH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR------QTFWILIFGSLHFFLSQLPDINSVSS 174 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~i~~~i~~pl~~~~~l~~l~~ 174 (437)
||.+ |..+..++..+...+.........++.+...++...+...+.+ .....++...+..++......+..+.
T Consensus 86 FG~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~ 164 (442)
T TIGR00800 86 FGIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHL 164 (442)
T ss_pred hhhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9985 7788999999999999999999999999888887653211111 12223344555556555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCC-cchHhhhhhCCCCCCCCccc
Q 013753 175 VSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKPSKI 253 (437)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~~~~~m~~p~~~ 253 (437)
....+....+......+......+...+................+..++...+-.+..+ .+.+.+.+. +|++++.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy----~~~~~~~ 240 (442)
T TIGR00800 165 FEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF----GKSKKTA 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh----cCCccch
Confidence 66666553333322222222221111111101110112334555666666654444444 678888888 6776664
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHhhh----cCCCCch--hhhhccCCChHHHH-----HHHHHHHHHHH-Hhccccccc
Q 013753 254 LMWKGALGAYFVNAICYFPVALIGYWA----FGQDVDD--NVLMALKRPGWLIA-----AANLMVVVHVI-GSYQVFAMP 321 (437)
Q Consensus 254 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~~-----~~~~~~~~~~~-~s~pl~~~~ 321 (437)
. +....+..........+|..+... +|+...+ +....+........ ...++..+..+ ...-...++
T Consensus 241 ~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys 318 (442)
T TIGR00800 241 I--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYS 318 (442)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4 667777777777777787777665 7754332 34444432111110 11122222222 344456666
Q ss_pred HHHHHHHHhhh
Q 013753 322 VFHLLEGMMIK 332 (437)
Q Consensus 322 ~~~~~~~~~~~ 332 (437)
.-..+.+.+.+
T Consensus 319 ~~l~l~~l~~~ 329 (442)
T TIGR00800 319 AGLDIAALLPK 329 (442)
T ss_pred hHHHHHHhCcC
Confidence 66666666643
No 55
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=86.07 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=136.0
Q ss_pred eeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchh---------c---cCCcc----c--
Q 013753 29 WWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHE---------C---VPGVR----F-- 90 (437)
Q Consensus 29 ~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~---------~---~~~~~----~-- 90 (437)
-..+...+.|-++|+|-|++|.+|+.+||++++.++.+.+.+++.+.....|... | .++++ .
T Consensus 14 q~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~sta 93 (319)
T KOG3832|consen 14 QTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTA 93 (319)
T ss_pred hhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccccc
Confidence 3445678899999999999999999999999999999999999988877766311 0 00000 0
Q ss_pred ------------------------------------CCHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHH
Q 013753 91 ------------------------------------DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 134 (437)
Q Consensus 91 ------------------------------------~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~ 134 (437)
.+.++++...|.+ .|-.+..++++++.+|....|...+-...-
T Consensus 94 sd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 94 SDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred CCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 1367888888885 788899999999999999999998887776
Q ss_pred HHHHHhcc---------CCC-ccc------------chhhHHHH-HHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 013753 135 KFVEMACS---------HCK-PLR------------QTFWILIF-GSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAW 191 (437)
Q Consensus 135 ~~~~~~~~---------~~~-~~~------------~~~~~~i~-~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 191 (437)
++.....+ .|. +.+ .+.+.+++ .++.+|+.+. ++++.++++.+....-....+..+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchh
Confidence 66654331 111 111 12222333 2333455554 788888888777664443322222
Q ss_pred HhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhh
Q 013753 192 AGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQAT 242 (437)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 242 (437)
...-.+.. .+.... .++...+-++-+-++...|+|.+|...|.....
T Consensus 252 ~l~tmqae-edaa~a---~p~arc~cgfgkl~~~aly~~~a~cmapda~ga 298 (319)
T KOG3832|consen 252 SLATMQAE-EDAAAA---HPPARCFCGFGKLFGCALYAFMAHCMAPDAIGA 298 (319)
T ss_pred hhhhhhhc-cccccc---CCccccccccccccchhhHHHHhhccCCCCCCC
Confidence 21111211 111111 122334555666688999999999999998886
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.85 E-value=5.1e-07 Score=82.73 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=131.0
Q ss_pred hhhhhhhccccccch---HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcc
Q 013753 33 TFHCVTAMIGAGVLS---LPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWI 109 (437)
Q Consensus 33 ~~~l~~~~iG~Gil~---lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~ 109 (437)
.+..+++++|+|.-+ +=.-|..-|+. |....++++.+-..+...+.+...+.+.. +|.|..++.+||+++| +
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~---~y~~~~~~v~~~~~~k-i 83 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNAT---SYREILKYVSGPKFAK-I 83 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHhhHHHHH-H
Confidence 455677999999876 44556677764 77778888888888888887776655433 9999999999999886 7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 013753 110 VLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTI 189 (437)
Q Consensus 110 ~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i 189 (437)
.|+...+..++.++.-..-.+..+.+.++- +.+.-.++....+..+.+.++.+.+-.++.+-+.+..+....
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~l--------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~ 155 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVL 155 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhCc--------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHH
Confidence 899989998888887655555455554432 222222444555555556666888777776666644333222
Q ss_pred HHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcC-CcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHH
Q 013753 190 AWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAG-HAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAI 268 (437)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~ 268 (437)
+..........+..+... ....+|.... .+...+...+ ...+.++-++ |++++... ++...+-.+.++
T Consensus 156 v~~~~~f~~~~~~a~~~~---~~~~~W~~~~--~~Y~alNi~~~~avLv~lg~~----~~~~~~~~--~g~l~gglIlgv 224 (349)
T COG3949 156 VTLSFQFTNLGNAAQIVL---TKQGNWKASA--VGYGALNILVAVAVLVPLGGR----MESRKVSG--IGGLIGGLILGV 224 (349)
T ss_pred HHHHHHHhhccchhhhcC---CcCCChHHHH--HhhhhHHHHhHhHhhhhhccc----ccccchhh--hhhhhhhHHHHH
Confidence 221111111111111111 1122232221 2222222222 2334445455 78777654 666666666666
Q ss_pred HHHhHHHHHhhhcC
Q 013753 269 CYFPVALIGYWAFG 282 (437)
Q Consensus 269 ~Y~~~g~~gy~~fg 282 (437)
+..+....-...++
T Consensus 225 l~~l~nlsLi~~~~ 238 (349)
T COG3949 225 LLFLINLSLIALYD 238 (349)
T ss_pred HHHHHHHHHHhhcc
Confidence 65555555444444
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.75 E-value=2.3e-05 Score=78.85 Aligned_cols=342 Identities=11% Similarity=0.001 Sum_probs=168.6
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHH--HhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAM--AYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~--~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~ 99 (437)
+++|+-++++-+..-.+..+..+.+.+-.+. ...++..++...++..++...-..+......+. +. ++.-+.|.
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl---~~~v~sR~ 97 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GV---PFAMILRA 97 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CC---ChhHhHHH
Confidence 4455566666555555444443332222111 123334444444444444433344444433322 22 78999999
Q ss_pred HhCCCccCcchhhHHH-HHHHHHHHHHHHhhcccHHHHHHHhccCCC---------cccchhh--HHHHHHHHHHhhcCC
Q 013753 100 AFGPKLGPWIVLPQQL-IVQVGCDIVYMVTGGKCLKKFVEMACSHCK---------PLRQTFW--ILIFGSLHFFLSQLP 167 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~-~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~---------~~~~~~~--~~i~~~i~~pl~~~~ 167 (437)
.||.+ |..+..+... +...+.........++.+..++....+... +.+...+ .+++.++..++.. .
T Consensus 98 sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~ 175 (484)
T PRK11375 98 SYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-G 175 (484)
T ss_pred HHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-c
Confidence 99985 7667776664 456666666677777777777665431100 1111122 2244455555554 3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhccccccCc-ccccc-CCCchhhHhHHHHHHHHHHHHhc-CCcchHhhhhhCC
Q 013753 168 DINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENV-SYAYK-HTSSADYMFRVFNALGQISFAFA-GHAVALEIQATIP 244 (437)
Q Consensus 168 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~~~ 244 (437)
..+.++++..++..+..+......+..+.+....+. +.... ..........+..++...+-++. ...+.+.+.+.
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy-- 253 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN-- 253 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc--
Confidence 677777777777665544333333333322211111 11000 00011123444444544444444 34577888887
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHhHHHHH----hhhcCCCC--chhhhhccCCChHHHHHHHHHHHHHHHHhc-cc
Q 013753 245 STPEKPSKILMWKGALGAYFVNAICYFPVALIG----YWAFGQDV--DDNVLMALKRPGWLIAAANLMVVVHVIGSY-QV 317 (437)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g----y~~fg~~~--~~~il~~~~~~~~~~~~~~~~~~~~~~~s~-pl 317 (437)
.|++++.. +...+++.+...+...+|+.. ...+|+.. ..+++..++. ......+.+.+.++.+.+- ..
T Consensus 254 --~k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 254 --AHSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred --cCChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHh
Confidence 67766543 555566666666555455443 44565433 2344454432 2333334444555555553 35
Q ss_pred ccccHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHhh--ccc---hhHHhhhhcccccchhHhhh
Q 013753 318 FAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT--FPF---FGDLLGFFGGFGFTPTSYFL 383 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~p~---~~~~~~~~Ga~~~~~~~~i~ 383 (437)
...+.-..+.+.+.++.+ .+|...... ++..+++.. ..+ +.+.+++.|++.+.....++
T Consensus 329 N~ys~~~~l~~l~pk~i~-----~~~~~~i~~--iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 329 NIIPAGYQIAALAPTKLT-----YKNGVLIAS--IISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred hcccHHHHHHHhCcCccc-----hhhHHHHHH--HHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777764422 122222111 112222211 123 67777777777665554444
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.67 E-value=4.4e-05 Score=77.04 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=99.1
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHH-HHHHHHH----HHHhhchhccCCcccCCHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISW-VTTLNTM----WQMINLHECVPGVRFDRYIDL 96 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~-~~~~~s~----~~l~~~~~~~~~~~~~~y~~~ 96 (437)
-.|+.+++...+.+..+.+|++ .++.|....+.|+. +....... ....... ..+.+..++. +..|..|+
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~T~~e~ 112 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG--WVLLAMIQVPTGYFVLGVLGKKFAIISRKY---NAITINDV 112 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHH
Confidence 4678999999999999999988 57788777777753 21111111 1111111 1222222322 23499999
Q ss_pred HHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHH
Q 013753 97 GRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 97 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (437)
-++-||++..+.+..+...+..++...+.....+..++.++ +.+....+++..+++......-.++...++.
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GG~~av~~td 184 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------GLSYLTALFIFSSSVLIYTTFGGFRAVALTD 184 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999976555666666666666665555555555555444 3344555666666677777788899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013753 177 LAAAVMSLSYSTIAWA 192 (437)
Q Consensus 177 ~~~~~~~~~~~~i~~~ 192 (437)
.+..+.+++..+++..
T Consensus 185 ~iQ~~v~~~~~~~~~~ 200 (471)
T TIGR02119 185 AIQGIVMFTGTTILLI 200 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998766554444333
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.58 E-value=0.00019 Score=72.55 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=94.3
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHH--HHHH-HHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLV--ISWV-TTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~--~~~~-~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
-.|+.+++...+.+..+.+|++ .+..|....+.|+...+.... .... ...+-...+.+..++. +..|..|+.+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~l~ 115 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY---NAVTLNDMLR 115 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHH
Confidence 4677889989999988888876 677886666667532111110 1111 1111222232323333 2349999999
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHH
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLA 178 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (437)
+-||++..+.+..+...+..+..........+..++.++ +.+....+++..+++......-.++...++..+
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------GISYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999976444445544444444444444555555555443 234455556666677777888899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013753 179 AAVMSLSYSTIAWA 192 (437)
Q Consensus 179 ~~~~~~~~~~i~~~ 192 (437)
..+++++..+++..
T Consensus 188 Q~~i~~~~~~vi~~ 201 (483)
T PRK09442 188 QGIVMLVGTVILLI 201 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 88865555444433
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.58 E-value=3.6e-05 Score=76.14 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=99.8
Q ss_pred ccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
.|+.+++...+.+..+.+|++ .++.|....+.|+. ++...+..........+.+.+..++.+ ..|..|+-++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhC
Confidence 467888888999988888887 57788777777753 222222222223333444444443322 3499999999999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 182 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (437)
++..+.+..+...+.......+.....+..++.+++ .+.....++...++......-.++...++..+..++
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 865666666666666666667766666666665542 333455555566666677777899999999888876
Q ss_pred HHHHHHH
Q 013753 183 SLSYSTI 189 (437)
Q Consensus 183 ~~~~~~i 189 (437)
++...++
T Consensus 150 ~~~~~i~ 156 (407)
T TIGR00813 150 MILGTFI 156 (407)
T ss_pred HHHHHHH
Confidence 5554333
No 61
>PRK12488 acetate permease; Provisional
Probab=98.53 E-value=0.00024 Score=72.85 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=96.5
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHH-HHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLN-TMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~-s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
-.|+.+++...+.+..+.++++ .++.|......|+- ++... +...+... ....+.+-.++. +..|..|.-++=
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~~lr~~---g~~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAERLRNL---GKYTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHHHHHHC---CCcchHHHHHHH
Confidence 3578899999999999988888 57899877778863 22111 11111111 123333332322 234899998888
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
||.+..+.+..+...+.............+..++.++ +.+....+++..+++......-.++...++..+..
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 8855566666666555555555555555555544443 33445555666677777777778999999999988
Q ss_pred HHHHHHHHH
Q 013753 181 VMSLSYSTI 189 (437)
Q Consensus 181 ~~~~~~~~i 189 (437)
+.++...++
T Consensus 212 ~im~~~~i~ 220 (549)
T PRK12488 212 VLLLSGTSF 220 (549)
T ss_pred HHHHHHHHH
Confidence 766554433
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.42 E-value=0.00034 Score=68.50 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=138.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHH
Q 013753 55 LGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 134 (437)
Q Consensus 55 ~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~ 134 (437)
.++..++...++..++...-..+......+. +. ++.-+.|..||++ |..+..+...+...+.........++.++
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl---~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~ 100 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GL---SAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAAS 100 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-Cc---CHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333333333322 22 7889999999985 77888888888888888888888899998
Q ss_pred HHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchh
Q 013753 135 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSAD 214 (437)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
.+++...+.. +...+..+..++..+.+.. ..+.++++..+...+..+..+...+....+.+..+ .... . .
T Consensus 101 ~~~~~~~~~~---~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~--~---~ 170 (386)
T TIGR02358 101 LLGGRLFGEE---SPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE-LWNR--A---G 170 (386)
T ss_pred HHHHHhcCCC---chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-hcCC--C---C
Confidence 8887643321 1233444444445555544 67778888888877555544443333333322111 1111 1 1
Q ss_pred hHhHHHHHHHHHHHHhc-CCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhcc
Q 013753 215 YMFRVFNALGQISFAFA-GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL 293 (437)
Q Consensus 215 ~~~~~~~~~~~~~faf~-~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~ 293 (437)
+ ..+..++....-.+. .....+.+.+. .|+|+|. -+....+..+...+-.++|.......++....+.+...
T Consensus 171 ~-~s~~~~~~~~~~~~~swa~~~~DysRy----~k~~~~~--~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~ 243 (386)
T TIGR02358 171 D-MSFAVAVELVIAMPLSWLPLIADYTRF----ARNPRHV--FLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA 243 (386)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHccchhhh----cCCCcce--ehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence 1 222223322221111 12336777786 5665543 36777888888888888888877777664333333322
Q ss_pred CCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 013753 294 KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (437)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~ 331 (437)
+.. ...-+...++..++......+.-..+.+.++
T Consensus 244 ---g~~-~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 244 ---GLG-IPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred ---cHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222334444445555556666566666653
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.40 E-value=0.00071 Score=69.41 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=91.4
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHH-HHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTL-NTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
-.|+.+++...+.+..+.+++. .+..|-...+.|+- ++...+ ...+.. .....+.+-.++. +..|..|+.++=
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr~---g~~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRNL---GRYTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHHc---CCccHHHHHHHH
Confidence 3577788888888888877765 78899777777853 322221 111111 2223344433332 234899998888
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
||.|.-+.+..+...+.............+..++.++ +.+....+++..+++......-.++...++..+..
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------GLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8765455555555444444444444444444444433 23345555666667777777778999999999988
Q ss_pred HHHHHHHHH
Q 013753 181 VMSLSYSTI 189 (437)
Q Consensus 181 ~~~~~~~~i 189 (437)
+.++...++
T Consensus 212 ~im~~g~i~ 220 (549)
T TIGR02711 212 VLLLFGATF 220 (549)
T ss_pred HHHHHHHHH
Confidence 765554333
No 64
>PRK09395 actP acetate permease; Provisional
Probab=98.39 E-value=0.00078 Score=69.24 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=92.4
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
-.|+.+++...+.+..+.+|++ .++.|-...+.|+. +....+-..+........+.+-.++ .+..|+.|+.++=|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r~---~g~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAERLRN---LGKYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHc
Confidence 4577888888888888888877 68899777778863 2221111111111222333332222 23359999999888
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
|+|.-+.+..+...+.............+..++.++ +.+....+++..+++......-.++...++..+..+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 865445555554444444444444444444444333 344455566666777777777789999999998877
Q ss_pred HHHHHHHH
Q 013753 182 MSLSYSTI 189 (437)
Q Consensus 182 ~~~~~~~i 189 (437)
.++...++
T Consensus 215 im~~g~ii 222 (551)
T PRK09395 215 LLLSGATF 222 (551)
T ss_pred HHHHHHHH
Confidence 55554333
No 65
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.35 E-value=0.00035 Score=68.15 Aligned_cols=255 Identities=16% Similarity=0.128 Sum_probs=143.6
Q ss_pred HHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhh
Q 013753 94 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVS 173 (437)
Q Consensus 94 ~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 173 (437)
-.++|..||. +|.++..+...+.+.|......+..++...+. ++.+...++++..+++...+.. ..+.+.
T Consensus 84 mi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--------~~~~~~~~ili~g~l~~l~~if-G~r~l~ 153 (442)
T COG1457 84 MILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGSG--------TGLPVWAGILIIGVLMTLVTIF-GYRALH 153 (442)
T ss_pred heeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccccC--------CCCcHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 4568889998 57789999999999999888888777662111 1334466666667676666665 566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCC-cchHhhhhhCCCCCCCCcc
Q 013753 174 SVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKPSK 252 (437)
Q Consensus 174 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~~~~~m~~p~~ 252 (437)
..+..+...................... +... ...+.++.++..+++..+-.+..+ +-...+.+. +|+|+-
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~~~~--~~~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy----~~~~t~ 225 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSKGGL--DALW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRY----APSPTP 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc--ceee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhh----cCCCch
Confidence 6666665544433333233222211111 1111 122556667777777666666666 444556666 565552
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCC-chhhhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 013753 253 ILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-DDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (437)
Q Consensus 253 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~ 331 (437)
++.-.....+......+-.+.|.....+-|+.. ..+....+.. ....+.+...+....+--...++.--.+.+...
T Consensus 226 ~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~ 302 (442)
T COG1457 226 SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIP 302 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh
Confidence 233355556777777777788888888888766 4444444432 233334445555555555555555555555444
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHhh----ccchhHHhhhhccccc
Q 013753 332 KRMNFPPGAAVRVVARSAYVAFTLFVGVT----FPFFGDLLGFFGGFGF 376 (437)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~p~~~~~~~~~Ga~~~ 376 (437)
+ .++..+.+...+. ..+++|+. ..+++..+.++|....
T Consensus 303 ~-----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~ 344 (442)
T COG1457 303 K-----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIP 344 (442)
T ss_pred h-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 1223333332221 33344443 4467777777666543
No 66
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.34 E-value=0.0004 Score=67.18 Aligned_cols=316 Identities=12% Similarity=0.086 Sum_probs=146.1
Q ss_pred hhhhhhccccccchHHHH-HHhcC--hhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCccCcch
Q 013753 34 FHCVTAMIGAGVLSLPYA-MAYLG--WGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIV 110 (437)
Q Consensus 34 ~~l~~~~iG~Gil~lP~a-~~~~G--~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~ 110 (437)
+.+..-.+|+|.|-.|-. -+++| |..+.+.+++.++..-..... +-...+ + +|.++.++. ||+.|..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g-G--~~~~l~~~~-g~~f~~lf~ 73 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG-G--GYDSLSARI-GKVFGILFT 73 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC-C--CHHHHHHHh-ChHHHHHHH
Confidence 356777899999988854 33555 556666666666655444333 221222 2 788877754 777775443
Q ss_pred hhHHHHHHHHH------HHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHh---hcCCCcchhhHHHHHHHH
Q 013753 111 LPQQLIVQVGC------DIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFL---SQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 111 ~~~~~~~~~~~------~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl---~~~~~l~~l~~~s~~~~~ 181 (437)
+.......-+. .++|-.. +..+++ .. +......+..++.+.+ ...|.-|-..+++.+-+.
T Consensus 74 ~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~----~~---~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 74 VILYLTIGPLFAIPRTATVSFEMG----IAPLLH----SP---TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHH----HHhccC----cc---cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 33332222221 1222221 222221 10 0112223333333333 223345555666666666
Q ss_pred HHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhc-------CCcchHhhhhhCCCCCCCCcccc
Q 013753 182 MSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFA-------GHAVALEIQATIPSTPEKPSKIL 254 (437)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-------~~~~~~~i~~~~~~~m~~p~~~~ 254 (437)
..++.+.++++..+.++..+ ..... ..... -..+.+++-.-.+.+. |+..+-.+.+. |+|||+| .
T Consensus 143 ~lLi~l~~lii~g~~~p~g~-~~~~~-~~~~~--~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~---g~~~~~~-~ 214 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGP-ILAAS-GAYAS--QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSR---GVTKPKK-I 214 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCC-cCCcc-ccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHH-H
Confidence 66665555555555442211 11000 00000 0223333333333443 55555555551 3788877 4
Q ss_pred hhhhhHHHH---HHHHHHHHhHHHHHhhhcC---CC-CchhhhhccCC---ChHHHHHHHHHHHHHHHHhcccccccHHH
Q 013753 255 MWKGALGAY---FVNAICYFPVALIGYWAFG---QD-VDDNVLMALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (437)
Q Consensus 255 ~~~~~~~~~---~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~~~~~ 324 (437)
.++....+. .....+|.-.+..|...-+ +. ..+.++.+..+ .+....+..+.+.++.+++---....+-+
T Consensus 215 ~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~ 294 (378)
T TIGR00796 215 TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444 4555556655566554422 11 23344444321 24445555556666666655544444444
Q ss_pred HHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhh
Q 013753 325 LLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLV 390 (437)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~ 390 (437)
.+.+... | .+.+. ......+.+.+++. -.++.++++. ...+.++.|...-+.
T Consensus 295 ~f~~~~~-----k--~~y~~-~v~~~~l~s~~ia~--~Gl~~Ii~~~----~PvL~~~YP~~i~li 346 (378)
T TIGR00796 295 YFHKLVP-----K--LSYKT-WVIVFTLFSFIVAN--LGLTQIISIS----IPVLMIIYPLAIVLI 346 (378)
T ss_pred HHHHhcC-----C--CCHHH-HHHHHHHHHHHHHH--hCHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4444432 1 11111 11222233333332 2667777653 345666666655433
No 67
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.26 E-value=0.0013 Score=66.56 Aligned_cols=154 Identities=14% Similarity=0.060 Sum_probs=101.1
Q ss_pred ccccCCceeehhhhhhhhccc-cccchHHHHHHhcChhHHHHHHHH---HHHHHHHHHHHHhhchhccCCcccCCHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIG-AGVLSLPYAMAYLGWGPGTMVLVI---SWVTTLNTMWQMINLHECVPGVRFDRYIDLG 97 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG-~Gil~lP~a~~~~G~~~g~~~l~~---~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~ 97 (437)
-..|+.+.+-..+....+.++ .-++++|......|+...++.... ....-.+-...+.+..+ .+ +..|..|+-
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~-~~--~~~T~~d~l 111 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK-AR--GATTIPDFL 111 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc--CCccHHHHH
Confidence 356777777777777777777 668999998888887655544442 22233333444444442 22 234999999
Q ss_pred HHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHH
Q 013753 98 RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 177 (437)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 177 (437)
++-||++..+.+..+...+.....+.......++.++..++ .+...-..+...++......-.++...++..
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 99999556788888888888888888888877777654443 1223333444555666666667778877777
Q ss_pred HHHHHHHHH
Q 013753 178 AAAVMSLSY 186 (437)
Q Consensus 178 ~~~~~~~~~ 186 (437)
+....+.+.
T Consensus 184 iqg~im~i~ 192 (493)
T COG0591 184 IQGLIMLIA 192 (493)
T ss_pred HHHHHHHHH
Confidence 776654443
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.26 E-value=0.0012 Score=66.76 Aligned_cols=156 Identities=12% Similarity=0.006 Sum_probs=85.9
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccC--CcccCCHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVP--GVRFDRYIDLGRH 99 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~--~~~~~~y~~~~~~ 99 (437)
-.|+.+++...+.+..+.+++. +++.|....+.|+...+. .+...+........+.+..++.. +.+..|..|+-++
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 4677888888888888877766 567887666778643222 11111222222333433222121 1233488999999
Q ss_pred HhCCCccCcch---hhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHH
Q 013753 100 AFGPKLGPWIV---LPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 100 ~~G~~~g~~~~---~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (437)
=||++ .+.+. .+...+.............+..++.++ +.+....+++..++.......-.++...++.
T Consensus 113 Ryg~~-~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 113 RFNDK-SRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------GLDYKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred HhCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99964 23322 222222222222333333333333332 2333555566666777777777899999999
Q ss_pred HHHHHHHHHHHH
Q 013753 177 LAAAVMSLSYST 188 (437)
Q Consensus 177 ~~~~~~~~~~~~ 188 (437)
.+..++++...+
T Consensus 184 ~iQ~~i~~~~~~ 195 (487)
T TIGR02121 184 FVQGLLMFFALV 195 (487)
T ss_pred HHHHHHHHHHHH
Confidence 888876554433
No 69
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.21 E-value=0.002 Score=66.38 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=93.6
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
-.|+.+++...+.+..+.++++ .++.|....+.|+. +....+............+.+..++.. ..|..|+-++=|
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~~---~~T~~e~l~~Rf 105 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKFG---KYTVPDFIGDRY 105 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHCC---CccHHHHHHHHh
Confidence 4688999999999999988776 67888776677753 221111111111223344444444332 348888888888
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
|+|.-+.+..+...+.............+..++.++ +.+....+++..+++......-.++...+...+..+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------EVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 865555665555555555545555554454444443 234455556666667777777789999999998877
Q ss_pred HHHHH
Q 013753 182 MSLSY 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
.+++.
T Consensus 178 im~ig 182 (552)
T TIGR03648 178 VLIVA 182 (552)
T ss_pred HHHHH
Confidence 55543
No 70
>PRK10484 putative transporter; Provisional
Probab=98.17 E-value=0.0017 Score=66.30 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=80.7
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
-.|+.+++-..+.+..+.++++ .++.|-...+.|+.... ......+........+....+| .+..|..|+-|+-|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~Ry 111 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK---SGITTIPDFLEERY 111 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHhc
Confidence 4688999999999999988887 57788776677754211 1111111111222333332222 23348999999999
Q ss_pred CCCccCcchhhHHHHHHHHHHH-HHHHhhcccHHHHHHHhccCCCcccchhhHHH----HHHHHHHhhcCCCcchhhHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDI-VYMVTGGKCLKKFVEMACSHCKPLRQTFWILI----FGSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~-~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i----~~~i~~pl~~~~~l~~l~~~s 176 (437)
|++. +........+....... ......+..++.++... ...+.+......+ ..++.......-.++...++.
T Consensus 112 g~~~-~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD 188 (523)
T PRK10484 112 DKTT-RRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--ELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSD 188 (523)
T ss_pred Cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 9863 33333333322222211 11122222233322110 0002222222221 233445556666899999999
Q ss_pred HHHHHHHHHH
Q 013753 177 LAAAVMSLSY 186 (437)
Q Consensus 177 ~~~~~~~~~~ 186 (437)
.+..+++++.
T Consensus 189 ~iQ~vim~i~ 198 (523)
T PRK10484 189 TINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHH
Confidence 9987765554
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=98.16 E-value=0.0025 Score=62.91 Aligned_cols=173 Identities=17% Similarity=0.098 Sum_probs=92.4
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcch
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 171 (437)
++..+.|..||.+ |..+..+...+...+.........++.+.+.. + .+.....++..++..+.... ..+.
T Consensus 72 ~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~----~----~~~~~~~~i~~~l~~~~~~~-G~~~ 141 (404)
T PRK11017 72 STHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT----G----LDINLLIVLSGLLMTVTAYF-GISA 141 (404)
T ss_pred CHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----C----CCHHHHHHHHHHHHHHHHHH-HHHH
Confidence 7899999999985 77777777777766666655555544443332 1 22233455555665555554 3566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcC-CcchHhhhhhCCCCCCCC
Q 013753 172 VSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAG-HAVALEIQATIPSTPEKP 250 (437)
Q Consensus 172 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~~~~~m~~p 250 (437)
+++++.++.....+..+...+....+....+..... . +.+...+..++...+-.+.. -.+.+.+.+. .|++
T Consensus 142 i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy----~k~~ 213 (404)
T PRK11017 142 LTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAI--V--PAEPLDFSAALTLVVGSFISGGTLTADFVRF----GRSA 213 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcC--C--CCCcccHHHHHHHHHHHHHHhHhcCCChHhh----ccCc
Confidence 666666665544433333222222221101100000 0 11123444555544444444 3677888887 5655
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCC
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 284 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 284 (437)
++.- .....+..+...+-..+|.......|+.
T Consensus 214 ~~~~--~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 214 KIAV--LATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred ccee--ehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4422 5555666666666667776666666653
No 72
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.14 E-value=0.0031 Score=64.10 Aligned_cols=156 Identities=10% Similarity=-0.037 Sum_probs=86.3
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhh-chh-ccCCcccCCHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMIN-LHE-CVPGVRFDRYIDLGRH 99 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~-~~~-~~~~~~~~~y~~~~~~ 99 (437)
-.|+.+++...+.+..+.+++. .++.|....+.|+..-+..+ ...+........+.. ... .....+..|..|+-++
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI-GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 4688999999999998988888 57789877788864212111 111111111122221 110 0111123488999998
Q ss_pred HhCCCccCcc---hhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHH
Q 013753 100 AFGPKLGPWI---VLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 100 ~~G~~~g~~~---~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (437)
=||++ .+.+ ..+...+.....+.......+..++.++ +.+....+++...++......-.++...++.
T Consensus 117 Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 117 RFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred HhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88863 3332 2222222222222333333333333332 3344555666677777778888899999999
Q ss_pred HHHHHHHHHHHH
Q 013753 177 LAAAVMSLSYST 188 (437)
Q Consensus 177 ~~~~~~~~~~~~ 188 (437)
.+..+++++..+
T Consensus 188 ~iQ~~imi~g~i 199 (502)
T PRK15419 188 TVQASLMIFALI 199 (502)
T ss_pred HHHHHHHHHHHH
Confidence 999876555433
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.06 E-value=0.00016 Score=71.62 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=84.0
Q ss_pred ccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
.|+.+++...+.+..+.+|++ +++.|....+.|+...+ ..+............+.+..++. +..|..|+-|+-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLW-YAIGYAIGFLLFALFFAPRLRRS---GAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGH-HHHHHHHHHHHHHHHTHHHHHHT---T--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceee-eccccchhHHHHHHHHHHhhccc---chhhhhhhhhhhcC
Confidence 467888999999999999887 67889888888865322 22222333333334444433322 23499999999999
Q ss_pred CCc-cCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 103 PKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 103 ~~~-g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
++. .+.+..+...+.............+..++..+ +.+.....++..++.......-.++...+...+..+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhcc--------chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 864 24444444444444445555555444444433 234455556666666667777788888888888877
Q ss_pred HHHHHHHHHH
Q 013753 182 MSLSYSTIAW 191 (437)
Q Consensus 182 ~~~~~~~i~~ 191 (437)
++++..+++.
T Consensus 153 i~~~~~~~~~ 162 (406)
T PF00474_consen 153 IMIIGAIVVL 162 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 5554433333
No 74
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.94 E-value=0.0047 Score=59.87 Aligned_cols=238 Identities=14% Similarity=0.101 Sum_probs=128.1
Q ss_pred ceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhch--hccCCcccCCHHHHHHHHhCCC
Q 013753 28 KWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLH--ECVPGVRFDRYIDLGRHAFGPK 104 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~--~~~~~~~~~~y~~~~~~~~G~~ 104 (437)
|...-+...+++.+|-| +.-.||...+.|...-++..++ ..+..=--.++.|.. ++.+++..++|.++.. +|+
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~~~ 85 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---KKK 85 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---Ccc
Confidence 44445888899999999 7889999887775432222222 222222223334422 1122222236666665 332
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCC-----------c-ccchhhHHH---HHHHHHHhhcCCCc
Q 013753 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK-----------P-LRQTFWILI---FGSLHFFLSQLPDI 169 (437)
Q Consensus 105 ~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~-----------~-~~~~~~~~i---~~~i~~pl~~~~~l 169 (437)
.++ .........+..+.-|.++.+-.+.+......+... . .++...... ...++......|.+
T Consensus 86 -~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV 163 (439)
T COG0733 86 -WEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGV 163 (439)
T ss_pred -chh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhH
Confidence 333 333345566677777888888887777766553211 0 111111111 12222233344555
Q ss_pred ch-hhHHHHHHHHHHHHHHHHHHHhhhccc-cccCccccccCC-CchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCC
Q 013753 170 NS-VSSVSLAAAVMSLSYSTIAWAGSLSHG-RIENVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPST 246 (437)
Q Consensus 170 ~~-l~~~s~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~ 246 (437)
++ +.+.+.+-+...++..++.+++....+ ..++.+.-..+. ....+++.+..+++..+|+..--.-+.-.++..
T Consensus 164 ~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSY--- 240 (439)
T COG0733 164 KKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSY--- 240 (439)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 44 788888888877777677667665443 223333222111 112346778889999999987665555556653
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHHhHHHH
Q 013753 247 PEKPSKILMWKGALGAYFVNAICYFPVALI 276 (437)
Q Consensus 247 m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 276 (437)
++|++ ++.+........-+.+=++.|+.
T Consensus 241 L~k~~--~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 241 LSKKS--DLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred cCccc--chhhhHHHHHHHHHHHHHHHHHH
Confidence 44443 45555554444444444444433
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.85 E-value=0.03 Score=55.21 Aligned_cols=235 Identities=14% Similarity=0.043 Sum_probs=115.5
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCC-------cccchhhHHHHHHHHH---
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK-------PLRQTFWILIFGSLHF--- 161 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~i~~~i~~--- 161 (437)
+|..+.|..||- .|...-.+.-.+....-.-...-..+..++-++....+... .......-.+...+..
T Consensus 104 pFpv~~RaSFGi-~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 104 PFPVLSRASFGI-YGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred CchHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHH
Confidence 899999999996 45433332222222222223334455566666665543210 0111111222222222
Q ss_pred HhhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccC-ccccccCCC-chhhHhHHHHHHHHHHHHhc-CCcchHh
Q 013753 162 FLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN-VSYAYKHTS-SADYMFRVFNALGQISFAFA-GHAVALE 238 (437)
Q Consensus 162 pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~faf~-~~~~~~~ 238 (437)
.+.+.+..++++++...+..++.+.....+++...+....+ ....+.... ....++.+...+...+-.|. ..-|.|.
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~D 262 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPD 262 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCch
Confidence 33445578888888777777665555554554443322211 111111111 12223333333332222222 2367788
Q ss_pred hhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHH----HHhhhcCCC--CchhhhhccCCChHHHHHHHHHHHHHHH
Q 013753 239 IQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL----IGYWAFGQD--VDDNVLMALKRPGWLIAAANLMVVVHVI 312 (437)
Q Consensus 239 i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~----~gy~~fg~~--~~~~il~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
..+. -|+|+... +.-.+++.+.+.+..++|+ .++..||+. ...+++.++++.....-++.+.++++.+
T Consensus 263 FsRf----a~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati 336 (497)
T COG1953 263 FTRF----AKSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATI 336 (497)
T ss_pred hhcc----cCChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8887 66666544 3345666666666666664 468889987 4458888887643332133333333332
Q ss_pred -HhcccccccHHHHHHHHhhhc
Q 013753 313 -GSYQVFAMPVFHLLEGMMIKR 333 (437)
Q Consensus 313 -~s~pl~~~~~~~~~~~~~~~~ 333 (437)
+...-...+...-+.+.+.+.
T Consensus 337 ~~Ni~aN~vsp~~D~s~l~Pk~ 358 (497)
T COG1953 337 STNIAANIVSPGYDLSALFPKY 358 (497)
T ss_pred hhhHHhccCChHHHHHHhcccc
Confidence 233334444444455555443
No 76
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.83 E-value=0.025 Score=55.26 Aligned_cols=369 Identities=12% Similarity=0.069 Sum_probs=165.3
Q ss_pred ccCCceeehhhhhhhhccccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 24 TRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
+++.....-.+....+-+|.|-++--.. =++.|+-. +..++...+..+-.+.+.--.-...++ +..|..++-++
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~l--l~vills~l~~~~~Q~~~arLgivTG~---~laq~ir~~y~ 88 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSL--LWVILLSNLMAYILQELSARLGIVTGK---GLAEAIRERYL 88 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHcc
Confidence 3445666668888888888886654433 33555432 222333333333333332222224454 77888898999
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 182 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (437)
|+++ +..++...+....++++...-.+-.++-++ ..+..+-.++.++..+.+...++.+.+..+...-..
T Consensus 89 ~~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~--------~ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~- 158 (416)
T COG1914 89 PGLG-ILLWILAEIAGIATDIAEVAGIAIALNLLF--------GIPLIIGAVITAVDVLIILLLKGYRLLERVVLILGL- 158 (416)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-
Confidence 8776 567777667777777766665554443332 122233344444444444444444444444333332
Q ss_pred HHHHHHHHHHhhh-ccccccCccccccCCCchhhHhHHHHHHHH-------HHHHhcCCcchHhhhhhCCCCCCCCccc-
Q 013753 183 SLSYSTIAWAGSL-SHGRIENVSYAYKHTSSADYMFRVFNALGQ-------ISFAFAGHAVALEIQATIPSTPEKPSKI- 253 (437)
Q Consensus 183 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~faf~~~~~~~~i~~~~~~~m~~p~~~- 253 (437)
...+...+..+ ...+..+.-.... .+...+.......+++ -..-...|... + +. .++++++
T Consensus 159 --~~~i~~~~~~~~~~p~~~~~~~~~f-~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~-~--~~----~~~~~~~~ 228 (416)
T COG1914 159 --VLVILFVYVAFVAPPPWGEVAKGDF-LPSSPWTEALLLIIAILGATVMPHILYLHSSLVQ-D--AG----IKGEENLR 228 (416)
T ss_pred --HHHHHHHHHHhhcCCCHHHHhccCC-CCCCcchhHHHHHHHHhccchhHHHHHhhcceec-c--cc----ccchhHHH
Confidence 22222222111 1111111001100 0111111112211111 11111111111 1 11 0112111
Q ss_pred chhhh---hHHHHHHHHHHHHhHHHHHhhhcC-CCC-c--hhhhhcc--CC---ChHHHHHHHHHHHHHHHHhccccccc
Q 013753 254 LMWKG---ALGAYFVNAICYFPVALIGYWAFG-QDV-D--DNVLMAL--KR---PGWLIAAANLMVVVHVIGSYQVFAMP 321 (437)
Q Consensus 254 ~~~~~---~~~~~~~~~~~Y~~~g~~gy~~fg-~~~-~--~~il~~~--~~---~~~~~~~~~~~~~~~~~~s~pl~~~~ 321 (437)
.+++. ..++.....++...+-......|. ++. + ++....+ -+ .+....+..+..+.+-..+.......
T Consensus 229 ~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a 308 (416)
T COG1914 229 ALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYA 308 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 11122 224444444555544444444443 221 1 1111111 11 12222222333333333333333333
Q ss_pred HHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCC---CC--
Q 013753 322 VFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP---KR-- 396 (437)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~---~~-- 396 (437)
....++...+.+ .+.+.+|...|....+++.++.+...+...++.+.+...+-.+.+..+.++++..+|+ +.
T Consensus 309 ~~~~~~g~~~~~---~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~ 385 (416)
T COG1914 309 GQIVMEGFLNWR---IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKN 385 (416)
T ss_pred hHHHHHhhhccc---CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccc
Confidence 333333333221 1345667777766666666666665699999999998888888888888888877765 22
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 013753 397 FSPKWIINWASIFIGVFIMLASTI 420 (437)
Q Consensus 397 ~~~~~~~~~~~~~~g~~~~v~gt~ 420 (437)
.+|-++..|.+..+=..+.+.-.+
T Consensus 386 ~~~~~~~~~~v~~~i~~L~i~li~ 409 (416)
T COG1914 386 PRWLTVLGWIVVILIVALNIILLV 409 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334455544444444443333
No 77
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.76 E-value=0.00047 Score=69.00 Aligned_cols=242 Identities=14% Similarity=0.108 Sum_probs=115.0
Q ss_pred cccCCceeehhhhhhhhccccccchHHHHHHhc--ChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYL--GWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~--G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
++|+.++++....-.+..+....+.+-...... ++.-+++..++..++...-.........|. +. +...+.|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl---~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GL---PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CC---Cchhcchhc
Confidence 344445555555555555554444444333223 344455555554444444444444544433 33 678899999
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCC-------cccchhhH--HHHHHHHHHhhcCCCcch
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK-------PLRQTFWI--LIFGSLHFFLSQLPDINS 171 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~--~i~~~i~~pl~~~~~l~~ 171 (437)
||. .|..+..+...+...+.........++.+...++...+... ......++ ++..++..+.. ....+.
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~ 158 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKA 158 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHH
Confidence 997 58888888888888888888888889999888876432000 00111111 12222222222 335666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCC-cchHhhhhhCCCCCCCC
Q 013753 172 VSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKP 250 (437)
Q Consensus 172 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~~~~~m~~p 250 (437)
++.+..+.........+........+.+. +..... ...+.....+..++....-.+... .+.+.+.+. +|++
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy----~~~~ 231 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLSA--PASPSPSGSFLAAIALVIGSWISWAPNASDYSRY----AKSD 231 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCCS----S----S-HHHHHHHHHCCCHHHHCCCHHHHTT----C--H
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-chhhhC--cccchhHHHHHHHHHHHHhhhhhhhhccccHHhh----CCCC
Confidence 66666666553333322222222222111 101110 001111112333333333222222 445678887 6766
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhh
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYW 279 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 279 (437)
++.. +....+..........++..+..
T Consensus 232 ~~~~--~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 232 TSAW--WGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcE--EEEeehhhhHHHHHHHHHHHHHH
Confidence 6544 66777777777777766666543
No 78
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.66 E-value=0.047 Score=53.17 Aligned_cols=291 Identities=14% Similarity=0.071 Sum_probs=147.6
Q ss_pred CcccCCHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcC
Q 013753 87 GVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 166 (437)
Q Consensus 87 ~~~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 166 (437)
+-+.+++.|....=++.+.-|.+..+...+..+...++.+.-.+..+..++ +.+...-+++..+++......
T Consensus 100 k~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~--------gv~~~vgv~ig~ilm~~Yvv~ 171 (529)
T COG4147 100 KLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLL--------GVPYHVGVVIGGILMMVYVVL 171 (529)
T ss_pred hcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--------CCCceeehhhHhHHHHHHHHh
Confidence 344458999888777776777766666666666666666555554444443 233355566667777777788
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHH-HhhhccccccC--------ccc---cccCCCchhhHhHHHHHHHHHHHHhcCCc
Q 013753 167 PDINSVSSVSLAAAVMSLSYSTIAW-AGSLSHGRIEN--------VSY---AYKHTSSADYMFRVFNALGQISFAFAGHA 234 (437)
Q Consensus 167 ~~l~~l~~~s~~~~~~~~~~~~i~~-~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 234 (437)
-.++...|.+.+.-++.....++.. ......+..+. .+. +.+...+....++-.+.++..+---.|..
T Consensus 172 GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTA 251 (529)
T COG4147 172 GGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTA 251 (529)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccC
Confidence 8999999999988775444322222 22221111110 000 00001111112333333444433334444
Q ss_pred chHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhh---cC-----------------CCCchhhhh---
Q 013753 235 VALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA---FG-----------------QDVDDNVLM--- 291 (437)
Q Consensus 235 ~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~---fg-----------------~~~~~~il~--- 291 (437)
.+|.+.-.. ..-|+-+.-+|.+.++.....++|+..-..|+.+ -+ |...+-+..
T Consensus 252 gLPHil~RF---fTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n 328 (529)
T COG4147 252 GLPHILMRF---FTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTN 328 (529)
T ss_pred CCCeEEEEE---EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccc
Confidence 455543221 3344444445889999999999999766665533 22 211111111
Q ss_pred --------ccCCChHHHHHHH---HHHHHHHHHhccccccc--HHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHH
Q 013753 292 --------ALKRPGWLIAAAN---LMVVVHVIGSYQVFAMP--VFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVG 358 (437)
Q Consensus 292 --------~~~~~~~~~~~~~---~~~~~~~~~s~pl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 358 (437)
.+.++++...++. +.-.++......+.... .+|.-.+.++++.+++++-...-+...+..++..+++
T Consensus 329 ~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~~lg 408 (529)
T COG4147 329 MAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLG 408 (529)
T ss_pred hHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHHHhe
Confidence 1111233222222 12222222222222222 2344445555443333222222233445556777777
Q ss_pred hhccchhHHhhhhcccccchhHhhhhhhhhhh
Q 013753 359 VTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLV 390 (437)
Q Consensus 359 ~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~ 390 (437)
+..|+ .+..++|--++...+..+|.+.+=.
T Consensus 409 i~~~g--nVaflVa~AF~lAaSa~fPvivlgl 438 (529)
T COG4147 409 ILPPG--NVAFLVALAFALAASANFPVIVLGL 438 (529)
T ss_pred ecCCc--cHHHHHHHHHHHHHHcccchhhHHH
Confidence 77776 5555666566666677788877433
No 79
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.42 E-value=0.16 Score=50.56 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=21.9
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHH
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMV 127 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~ 127 (437)
+..|..|+-+|+++. +..++...+...+.......
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~ 129 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVI 129 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 789999999997544 44444444444444444444
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.31 E-value=0.09 Score=51.04 Aligned_cols=81 Identities=10% Similarity=0.198 Sum_probs=45.2
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhc--CCCc
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDI 169 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l 169 (437)
+..|..++-+||+++ +...+...+.......+...-.+..++.++ +.+...+..+..+..+.+.. .++.
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVIAILLLWLSSGGY 113 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 778888888888665 445555555555555554444433333222 23446666665555555444 5566
Q ss_pred chhhHHHHHHHH
Q 013753 170 NSVSSVSLAAAV 181 (437)
Q Consensus 170 ~~l~~~s~~~~~ 181 (437)
+.+..+...-..
T Consensus 114 ~~~E~~~~~lv~ 125 (358)
T PF01566_consen 114 RRLERILKVLVA 125 (358)
T ss_pred hHHHHHHHHHHH
Confidence 666666554444
No 81
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.11 E-value=0.014 Score=58.88 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHh
Q 013753 219 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 278 (437)
Q Consensus 219 ~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 278 (437)
+-..|++++-+-.|..+ -++|.+|+|+|+| .+||....+....+++|+++.++--
T Consensus 296 F~~~FgV~F~g~tGimA----GAnMSgELk~PSk-SIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 296 FASTFGVFFPGTTGIMA----GANMSGELKAPSK-SIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred hhhhheeeeccchhhhc----CCCcCccccCccc-cCCccchHHHHHHHHHHHHHHHHhc
Confidence 44445555544444322 2345566999999 7999999999999999998776543
No 82
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.96 E-value=0.015 Score=55.07 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhh-chhccCCcccCCHHHHHHHHhCCC
Q 013753 26 RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMIN-LHECVPGVRFDRYIDLGRHAFGPK 104 (437)
Q Consensus 26 ~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~-~~~~~~~~~~~~y~~~~~~~~G~~ 104 (437)
..+.+...-+=..++-|+|.+.=|..-.+.||+++.+-.++-+++.--..-...- ...|++++ |..|++++..||+
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~---Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK---SIGEIAGKYLGKR 127 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc---cHHHHHHHHHHHH
Confidence 3466677888899999999999898779999998887776544433322222222 12245554 9999999999985
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhhcccHH
Q 013753 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 134 (437)
Q Consensus 105 ~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~ 134 (437)
++.+..+..++........+....++.+.
T Consensus 128 -~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 128 -AKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777777777665555543
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.82 E-value=0.47 Score=46.68 Aligned_cols=328 Identities=15% Similarity=0.160 Sum_probs=158.5
Q ss_pred ceeehhhhhhhhccccccchHHHHHH-hcC--hhHHHHHHHHHHHHHHH-HHHHHhhchhccCCcccCCHHHHHHHHhCC
Q 013753 28 KWWYSTFHCVTAMIGAGVLSLPYAMA-YLG--WGPGTMVLVISWVTTLN-TMWQMINLHECVPGVRFDRYIDLGRHAFGP 103 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~Gil~lP~a~~-~~G--~~~g~~~l~~~~~~~~~-s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~ 103 (437)
......+.+.....|+|=|-.|-... ++| |+++.+-+++.++.--. +.....+ . +. ++++++++. ||
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~----~-~~---~~~~l~~~v-~~ 74 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK----S-GG---GIEDLASRV-GP 74 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----c-CC---CHHHHhccc-Cc
Confidence 34556778899999999888884433 344 77777777776654322 2222222 1 21 677777765 55
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHH----HhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 013753 104 KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE----MACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 104 ~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (437)
+.|..+..+. ..+.|- ...+-+...--.+ .+.+.....+...+.+++..+.+.+++-| -+-+.++..+-
T Consensus 75 ~f~~if~~~i--~l~IGP----~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p-~kivd~iGk~L 147 (427)
T PF05525_consen 75 KFALIFTILI--YLSIGP----LFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNP-SKIVDRIGKFL 147 (427)
T ss_pred HHHHHHHHHH--HHHHHh----cccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhch-hhHHHHHHHHH
Confidence 5553322111 111111 1222222221111 11111112334444555555666665554 33344455455
Q ss_pred HHHHHHHHHHHHHhhhcccc--ccCccccccCCCchh---hHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc
Q 013753 180 AVMSLSYSTIAWAGSLSHGR--IENVSYAYKHTSSAD---YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (437)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (437)
+...++.+.++++..+.... ..+.+....+.+... +-.+...++..+.|+-.- ..-.++. ..+++++.+
T Consensus 148 TP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iI----i~~i~~~--g~~~~k~~~ 221 (427)
T PF05525_consen 148 TPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIII----INAIRQK--GYKDKKEIK 221 (427)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHh--CCCCHHHHH
Confidence 55455554555555444322 111111111111111 223344566666666544 3333331 123333221
Q ss_pred --hhhhhHHHHHHHHHHHHhHHHHHhhhcC---CC-CchhhhhccCC---ChHHHHHHHHHHHHHHHHhcccccccHHHH
Q 013753 255 --MWKGALGAYFVNAICYFPVALIGYWAFG---QD-VDDNVLMALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (437)
Q Consensus 255 --~~~~~~~~~~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~ 325 (437)
..++-.++.....++|...+..|...-+ ++ ..++++.+..+ ++.+..+..+.+.++.+++---....+-+.
T Consensus 222 ~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~y 301 (427)
T PF05525_consen 222 KYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEY 301 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234446777777888888888776554 22 33355554422 234555556666666666666666666676
Q ss_pred HHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhh
Q 013753 326 LEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 391 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~ 391 (437)
+++..+ + . ..+++. .+..+.+.++|. -.++.++++. ...+.++.|...-+.+
T Consensus 302 f~~~~~-k----i-sY~~~v--~i~~i~S~~ian--~Gl~~Ii~~s----~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 302 FSELFP-K----I-SYKVWV--IIFTIFSFIIAN--LGLDQIIKIS----VPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHhc-c----c-ChHHHH--HHHHHHHHHHHH--hCHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 666654 1 1 111111 122233333332 2456666663 3567778887775554
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.79 E-value=0.38 Score=47.14 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred CccccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHH-HHHHH---HHHHHHHHhhchhccCCcc--cCCH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLV-ISWVT---TLNTMWQMINLHECVPGVR--FDRY 93 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~-~~~~~---~~~s~~~l~~~~~~~~~~~--~~~y 93 (437)
++++++.|.+|+.+.-+.+.+|+| +-....|..-.| ||.+.+. +.+++ +-|+=..|....++..+++ ...-
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG--PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG--PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 455668999999999999999999 677999998776 5555543 33333 3333344444333222221 1245
Q ss_pred HHHHHHHhCCCcc
Q 013753 94 IDLGRHAFGPKLG 106 (437)
Q Consensus 94 ~~~~~~~~G~~~g 106 (437)
..+.++.+|.|+.
T Consensus 91 ~yyi~~gl~~k~l 103 (416)
T PF01235_consen 91 MYYIEKGLGSKWL 103 (416)
T ss_pred HHHHHHHhccchH
Confidence 6678888887654
No 85
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.67 E-value=0.017 Score=56.66 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=75.5
Q ss_pred ccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHH---HHHHHHHHhhchhccCCcccCCH-----H
Q 013753 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVT---TLNTMWQMINLHECVPGVRFDRY-----I 94 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~---~~~s~~~l~~~~~~~~~~~~~~y-----~ 94 (437)
+++.|.+|+.+..+.+.+|+| ++.+|.+.+..| -.+++-+.+.+++ +.+.-..+....++.++++ +| .
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g--~~~GGP~y 120 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADG--VFRGGPMY 120 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCC--CEecChHH
Confidence 356899999999999999998 999999977666 3342323333333 2233233333222222221 35 7
Q ss_pred HHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhH
Q 013753 95 DLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSS 174 (437)
Q Consensus 95 ~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 174 (437)
++-+...||+.| .+..++ .+..++.. ...-.+.+.+.+.... +.+ .+...+...++.-......++.+..
T Consensus 121 yi~~gl~~k~lg-~lfa~~-~i~~f~~~---~~~Q~nsi~~~~~~~~----~~~-~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 121 YIKKGLGMRWLA-VLFAVF-LIASFGIG---NMVQANAIASALSNAF----NVP-KLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHHHHhCccHHH-HHHHHH-HHHHHhhh---HHHHHHHHHHHHHHHc----CCc-HHHHHHHHHHHHHHHHhcCchHHHH
Confidence 776666666444 222222 22221211 1111222333333211 122 2222233333334444557888888
Q ss_pred HHHHHHHHHHH
Q 013753 175 VSLAAAVMSLS 185 (437)
Q Consensus 175 ~s~~~~~~~~~ 185 (437)
++...+..+..
T Consensus 191 v~~~lvP~m~~ 201 (425)
T TIGR00835 191 ISSVVVPFMAL 201 (425)
T ss_pred HHHHHHHHHHH
Confidence 77777775444
No 86
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.35 Score=49.79 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=81.5
Q ss_pred eeehhhhhhhhcccccc-chHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchh--ccCCcccCCHHHHHHHHhCCCc
Q 013753 29 WWYSTFHCVTAMIGAGV-LSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHE--CVPGVRFDRYIDLGRHAFGPKL 105 (437)
Q Consensus 29 ~~~~~~~l~~~~iG~Gi-l~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~--~~~~~~~~~y~~~~~~~~G~~~ 105 (437)
...-..=.+..+.|.=. +=|-+....+|..-+..+.+++++.+..|..-+...+. -.|.-+ +|.-+.| .+||-+
T Consensus 117 ~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISR-sLGPEF 193 (1075)
T KOG2082|consen 117 LMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISR-SLGPEF 193 (1075)
T ss_pred eeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEec-ccCccc
Confidence 33334445677777543 33667778888888888888888888877766665443 133333 6665544 567767
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhhcccH-HHHHHHhc--cCCC--------cccchhhHHHHHHHHHHh--hcCCCcchh
Q 013753 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCL-KKFVEMAC--SHCK--------PLRQTFWILIFGSLHFFL--SQLPDINSV 172 (437)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~y~~~~~~~l-~~~~~~~~--~~~~--------~~~~~~~~~i~~~i~~pl--~~~~~l~~l 172 (437)
|- .+.+|...-.......|++-.-+.+ .++++... +... ..+-+.+-.++.++.... .-.|-.+.+
T Consensus 194 Gg-AVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~ 272 (1075)
T KOG2082|consen 194 GG-AVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKF 272 (1075)
T ss_pred cc-eeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 73 4555544444444445544332222 22333221 1000 123345544444443333 334556666
Q ss_pred hHHHHHHHHHHHH
Q 013753 173 SSVSLAAAVMSLS 185 (437)
Q Consensus 173 ~~~s~~~~~~~~~ 185 (437)
+.++..++++.++
T Consensus 273 A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 273 APVFLACVILSIL 285 (1075)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666654433
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0079 Score=59.84 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=131.4
Q ss_pred ccCCceeehhhhhh-hhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 24 TRRAKWWYSTFHCV-TAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 24 ~~~~~~~~~~~~l~-~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
+-+-||+++++.-. -.+.|.= .|=+++...|+|...+++++.+...++..|..--....++..-+.-..|. +..+.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yf-lis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYF-LISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEE-EEEecc
Confidence 34468888776532 2333432 24488999999999999888877777666654333322221111101333 344556
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
|+..| -.+.+.+.+.+...+..|.+-.++.+.+++...... -.+. ...+...+... -+.....|...+.++
T Consensus 106 g~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~--~i~g--i~~vt~~ill~----i~~ag~~w~~k~q~~ 176 (643)
T KOG2083|consen 106 GPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE--MIDG--IGSVTVLILLA----INVAGVEWEAKLQIV 176 (643)
T ss_pred ccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH--Hhcc--hhHHHHHHHHH----hhhccchhHHHHHHH
Confidence 77666 456777777788888889999999988888764311 0111 00111111111 144555666666555
Q ss_pred HHHHHHHHHHHh---hhcccc-cc-C-----ccccccCC-CchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCC
Q 013753 182 MSLSYSTIAWAG---SLSHGR-IE-N-----VSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (437)
Q Consensus 182 ~~~~~~~i~~~~---~~~~~~-~~-~-----~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p 250 (437)
+.++.++.+.-+ .+.... .. + .+.-..+. +....-..++..|++++=+..|.-.=..+.++ +|+|
T Consensus 177 ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGd----L~~P 252 (643)
T KOG2083|consen 177 LLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGD----LKDP 252 (643)
T ss_pred HHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCC----CCCc
Confidence 333332222211 111111 00 0 00000001 11111235667778887777665555566666 8999
Q ss_pred cccchhhhhHHHHHHHHHHHHhHH
Q 013753 251 SKILMWKGALGAYFVNAICYFPVA 274 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g 274 (437)
++ .+++....+......+|+.+-
T Consensus 253 q~-~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 253 QK-AIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred hh-hcccchhhhhhhhhhhhhhhh
Confidence 98 789999999999999997544
No 88
>PRK15015 carbon starvation protein A; Provisional
Probab=95.68 E-value=0.13 Score=52.43 Aligned_cols=103 Identities=23% Similarity=0.174 Sum_probs=69.0
Q ss_pred CceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhh-chhccCCcccCCHHHHHHHHhCCCc
Q 013753 27 AKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMIN-LHECVPGVRFDRYIDLGRHAFGPKL 105 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~-~~~~~~~~~~~~y~~~~~~~~G~~~ 105 (437)
.+.+-..-+=+.++-|+|.+-=|..-.+.||.|+.+-.++-.++.---.-...- ...|++++ |..|++++..|++
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~Gr---Sig~ia~~~iG~~- 158 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGR---SLGELVKEEMGPT- 158 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCc---cHHHHHHHHhhHH-
Confidence 455566778899999999999998888999999988776644432222222211 22244454 9999999999986
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhhcccH
Q 013753 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCL 133 (437)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~y~~~~~~~l 133 (437)
++.+..+..++........+...+.+.+
T Consensus 159 ~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 159 AGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555555555554443
No 89
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=95.53 E-value=1.3 Score=45.18 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=119.8
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhch-hccCCcccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLH-ECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~~~~~~ 100 (437)
..|+..++...+.++.+.+|++ ++++|.-..+.|.-.....+ ........+.... ...-+.+..+-.|+.++-
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~-----~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEW-----NALLSVLLLGWIFIPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHH-----HHHHHHHhhheEEEEEEEecCeeehhHHHHHH
Confidence 3577899999999999999988 78999877777643222221 1122222222211 111123344777888888
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
||++ .+.+..+...+..+.-...+...-+-.+++.+ +.+......+..++.......-.++..-|+-.+..
T Consensus 118 f~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvt--------g~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 118 FGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVT--------GINLYLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred hccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHh--------ccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 8875 55444444433333222222111111122222 22223333334444555555557888888888888
Q ss_pred HHHHHHHHHHHHhhhcc-ccc--------cC-----c-cccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCC
Q 013753 181 VMSLSYSTIAWAGSLSH-GRI--------EN-----V-SYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS 245 (437)
Q Consensus 181 ~~~~~~~~i~~~~~~~~-~~~--------~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~ 245 (437)
..++.....+++.+..+ +.. ++ . +...++.....-|.-++.....-...|..+++...=+-.
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~ls--- 265 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLS--- 265 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhc---
Confidence 87776656555554322 111 00 0 111111111223443444455555566666665443333
Q ss_pred CCCCCcccchhhhhHHHHHHHHHH---HHhHHHHHhhhcC
Q 013753 246 TPEKPSKILMWKGALGAYFVNAIC---YFPVALIGYWAFG 282 (437)
Q Consensus 246 ~m~~p~~~~~~~~~~~~~~~~~~~---Y~~~g~~gy~~fg 282 (437)
+|+-++. ++..........+. +...|+..|..|.
T Consensus 266 -l~slk~a--k~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 266 -LPSLKHA--KPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred -cccHHHh--hhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 4444433 36665444444444 4455666665553
No 90
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.50 E-value=2.4 Score=40.40 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=124.9
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHH-HHHHHHHHhhc----hhccCCcccCCHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVT-TLNTMWQMINL----HECVPGVRFDRYIDL 96 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~-~~~s~~~l~~~----~~~~~~~~~~~y~~~ 96 (437)
.+|+.+-+...+....+-+++. .++=|-+-.+.| +||+++..+-+. ...+.-.+.+- +++++.. +..|+
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~G--lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~ 111 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYG--LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNAL---TINDL 111 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhc--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHH
Confidence 4677888888888888888876 456777777777 456555544443 33344444442 2223222 67777
Q ss_pred HHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHH
Q 013753 97 GRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (437)
Q Consensus 97 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (437)
-++=+-.+.-.++..+.+.+...+..++..+-.++.++... +.+...-.++++..+..-...-..+.....-
T Consensus 112 l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------gidY~tgL~ifa~~V~iYt~fGGFRAvvltD 183 (473)
T COG4145 112 LFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------GIDYTTGLLIFAVSVAIYTAFGGFRAVVLTD 183 (473)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------CCCchhhHHHHHHHHHHHHhhcceeeeehHH
Confidence 76655333333444445555555555555554444444333 3344555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc--------ccCccccccCCCchhh--HhHHHHHHHH-HHHHhcCCcchHhhhhhCCC
Q 013753 177 LAAAVMSLSYSTIAWAGSLSHGR--------IENVSYAYKHTSSADY--MFRVFNALGQ-ISFAFAGHAVALEIQATIPS 245 (437)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~faf~~~~~~~~i~~~~~~ 245 (437)
.+.-..+++..++.....++.+. .++.|+....+.+.++ ..++..++-+ +.++-.|.+... .+.+.
T Consensus 184 ~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~--vr~ia- 260 (473)
T COG4145 184 TIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTA--VRCIA- 260 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHH--HHHHh-
Confidence 66555454443333333332211 1222322211221222 2334444333 233444443221 22210
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHHH---hHHHHHhhhcCCCC
Q 013753 246 TPEKPSKILMWKGALGAYFVNAICYF---PVALIGYWAFGQDV 285 (437)
Q Consensus 246 ~m~~p~~~~~~~~~~~~~~~~~~~Y~---~~g~~gy~~fg~~~ 285 (437)
.||.+ .+.+...++..+..++-+ +.|..|....+|-+
T Consensus 261 -~kDsk--aih~gmiigt~vi~il~~gmhl~G~~graViPdlt 300 (473)
T COG4145 261 -FKDSK--AIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT 300 (473)
T ss_pred -ccchh--HHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC
Confidence 34333 344666666665555444 67788888888743
No 91
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.40 E-value=2.9 Score=41.02 Aligned_cols=149 Identities=12% Similarity=0.050 Sum_probs=78.1
Q ss_pred ccccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHH-HHHHH---HHHHHHHHHhhchhccCCcc--cCCHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVL-VISWV---TTLNTMWQMINLHECVPGVR--FDRYI 94 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l-~~~~~---~~~~s~~~l~~~~~~~~~~~--~~~y~ 94 (437)
++++..|.+|+.+.-+.+.+|+| +-..+.|.+-.| ||-+.+ .+.++ .+-|.=..|....++..+++ +..-.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG--PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG--PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC--CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 56677899999999999999999 667999988777 444433 33333 34444444444443222122 12334
Q ss_pred HHHHHHhCCCccCcchhhHHHHHHHHHHHHHHH----hhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcc
Q 013753 95 DLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMV----TGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 170 (437)
Q Consensus 95 ~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 170 (437)
.+-++-+|.|+--.+.. ++..++|.. .-++.+.+.+...+ +.+ .+..-+...++..+.....++
T Consensus 136 yYi~kGl~~r~l~v~FA-------~~li~afg~i~n~vQ~NsIa~a~~~af----~~~-~~~~gi~la~l~~~VI~GGi~ 203 (452)
T COG1115 136 YYIEKGLGMRWLAVLFA-------FALIAAFGFIGNGVQSNSIASALANAF----GIP-PLVTGIVLALLVALVIFGGIK 203 (452)
T ss_pred HHHHhhcCCcHHHHHHH-------HHHHHHHHhhcchhhHHHHHHHHHHhc----CCc-HHHHHHHHHHHHHHHHHcchH
Confidence 55666676543212222 222222221 11122222333221 222 222233344444555566788
Q ss_pred hhhHHHHHHHHHHH
Q 013753 171 SVSSVSLAAAVMSL 184 (437)
Q Consensus 171 ~l~~~s~~~~~~~~ 184 (437)
.++.++...+.++.
T Consensus 204 rIa~v~~~vVPfMA 217 (452)
T COG1115 204 RIAKVSSKVVPFMA 217 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776444
No 92
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=95.33 E-value=3 Score=41.19 Aligned_cols=327 Identities=13% Similarity=0.101 Sum_probs=152.8
Q ss_pred ceeehhhhhhhhccccccchHHHHHH-hcC--hhHHHHHHHHHHHHH-HHHHHHHhhchhccCCcccCCHHHHHHHHhCC
Q 013753 28 KWWYSTFHCVTAMIGAGVLSLPYAMA-YLG--WGPGTMVLVISWVTT-LNTMWQMINLHECVPGVRFDRYIDLGRHAFGP 103 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~Gil~lP~a~~-~~G--~~~g~~~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~ 103 (437)
.....-+.+..-..|+|=|-.|-... ++| |+++.+-+++.+..- ..+...+.+ . + + ++++++++. ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~----~-~-g--~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK----V-G-G--GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----c-C-C--CHHHHhhhc-ch
Confidence 45566888999999999888884433 444 666666666655432 222222222 1 2 2 678888776 55
Q ss_pred CccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHH-hccCCCc--ccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 104 KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM-ACSHCKP--LRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 104 ~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~-~~~~~~~--~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
+.+..+.. ....+.|- ...+-+...--.+. ..+..++ .+...+.+++..+.+.+++-| -+-+.++..+-+
T Consensus 80 ~f~~~f~~--~i~l~IGP----~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p-~klvd~iGK~LT 152 (439)
T PRK15433 80 VAGVLLAT--VCYLAVGP----LFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYP-GKLLDTVGNFLA 152 (439)
T ss_pred HHHHHHHH--HHHHHHhh----ccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcCh-hhHHHHhHHHHH
Confidence 55532211 11222221 11111111111110 0000001 111223344455555555543 233344444444
Q ss_pred HHHHHHHHHHHHhhhcccccc--CccccccCCC---chhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc-
Q 013753 181 VMSLSYSTIAWAGSLSHGRIE--NVSYAYKHTS---SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL- 254 (437)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~- 254 (437)
...++.+.++++..+.+...+ +++..+...+ ...+-.+...+++...|+-.-...+ ++- ..+++++..
T Consensus 153 P~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i----~~~--G~~~~~~~~k 226 (439)
T PRK15433 153 PLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA----RSR--GVTEARLLTR 226 (439)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHc--CCCCHHHHHH
Confidence 444444444444444332111 1101110111 1112234557777777775543322 321 134443322
Q ss_pred -hhhhhHHHHHHHHHHHHhHHHHHhhhc---CCC-CchhhhhccC---CChHHHHHHHHHHHHHHHHhcccccccHHHHH
Q 013753 255 -MWKGALGAYFVNAICYFPVALIGYWAF---GQD-VDDNVLMALK---RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLL 326 (437)
Q Consensus 255 -~~~~~~~~~~~~~~~Y~~~g~~gy~~f---g~~-~~~~il~~~~---~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~ 326 (437)
..++-.++.....++|...+..|...- ++. ..++++.... -+++...+..+.+.++.+++---....+.+.+
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f 306 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFF 306 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224445777777888988888887553 322 2334444432 13455555666666777766666666666665
Q ss_pred HHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhh
Q 013753 327 EGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 391 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~ 391 (437)
++.+. . +.+ ....+..+.++.++. -.++.++++. ...+.++.|...-+.+
T Consensus 307 ~~~~~----i---sY~--~~v~i~~l~S~~lSn--~G~~~II~~s----~PiL~~iYP~~IvLil 356 (439)
T PRK15433 307 AQYVP----L---SYR--TLVFILGGFSMVVSN--LGLSQLIQIS----VPVLTAIYPPCIALVV 356 (439)
T ss_pred HhhcC----C---cHH--HHHHHHHHHHHHHHH--hHHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 55442 1 111 112222233333332 2355555553 3567777777665543
No 93
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.16 E-value=4.5 Score=41.51 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=50.8
Q ss_pred HhhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhhcc-ccccCcccccc-CCCchhhHhHHHHHHHHHHHHhcCCcchHhh
Q 013753 162 FLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSH-GRIENVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEI 239 (437)
Q Consensus 162 pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 239 (437)
-+...|.+++...+.......-.+.+++..+..... +..++.++-.. +.....+.+-...+++..+|+.+--.-....
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 344456677666665554432233333334444322 22222222111 1111223344578899999999865555555
Q ss_pred hhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHH
Q 013753 240 QATIPSTPEKPSKILMWKGALGAYFVNAICYFPVA 274 (437)
Q Consensus 240 ~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g 274 (437)
++. .+|++.+..|........-...-++.|
T Consensus 272 ~~S-----y~~~~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 272 YGS-----YNKFKNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HHT-----TS-TTS-SHHHHHHHHHHHHHHHHTTG
T ss_pred EcC-----cCCCCccccccceEEEcCchhhhHhHH
Confidence 555 233444566665544444444444333
No 94
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.02 E-value=0.51 Score=45.87 Aligned_cols=78 Identities=18% Similarity=0.398 Sum_probs=57.8
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcch
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 171 (437)
-..+++++.+|+ .|..+..+...+.|+.++++.....+|+.++..+ ..+.+.|.++..++.+.++.. ++++
T Consensus 256 ~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s~~ia~~-Gl~~ 326 (378)
T TIGR00796 256 ILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFSFIVANL-GLTQ 326 (378)
T ss_pred HHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHh-CHHH
Confidence 578899999998 6889999999999999999999998887776643 245566666666666655554 5555
Q ss_pred hhHHHHH
Q 013753 172 VSSVSLA 178 (437)
Q Consensus 172 l~~~s~~ 178 (437)
+-.++.-
T Consensus 327 Ii~~~~P 333 (378)
T TIGR00796 327 IISISIP 333 (378)
T ss_pred HHHHHHH
Confidence 5444333
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.82 E-value=0.6 Score=45.97 Aligned_cols=78 Identities=14% Similarity=0.371 Sum_probs=62.2
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcch
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 171 (437)
-..+++++.+|+ .|..+..+...+.|+-++++-....+|+.++..+. .+++.|..+..++.+.++.. .+++
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------isY~~~v~i~~i~S~~ian~-Gl~~ 332 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------ISYKVWVIIFTIFSFIIANL-GLDQ 332 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHHHHHHHHHHHHHh-CHHH
Confidence 578889999997 79999999999999999999999999998887762 45677877777777777766 5555
Q ss_pred hhHHHHH
Q 013753 172 VSSVSLA 178 (437)
Q Consensus 172 l~~~s~~ 178 (437)
+-.++.-
T Consensus 333 Ii~~s~P 339 (427)
T PF05525_consen 333 IIKISVP 339 (427)
T ss_pred HHHHHHH
Confidence 5444433
No 96
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=92.13 E-value=13 Score=36.52 Aligned_cols=26 Identities=4% Similarity=0.008 Sum_probs=17.4
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHH
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQ 118 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~ 118 (437)
+..|.+|+-++| +.++..++...+..
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l~i 90 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAELAI 90 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 789999999987 45555544433333
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.23 E-value=5.7 Score=38.62 Aligned_cols=79 Identities=18% Similarity=0.391 Sum_probs=63.1
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcch
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 171 (437)
=..+..++.||+ .|..+...+..+.|+-++++-....+|+.++.++. .++..|..++.++.+.++.. ++++
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------~SY~~~v~if~i~sflvan~-GL~~ 334 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------LSYKTWVIIFTLISFLVANL-GLEQ 334 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHh-hHHH
Confidence 578889999997 79999999999999999999999999998888763 45677888888777777666 5555
Q ss_pred hhHHHHHH
Q 013753 172 VSSVSLAA 179 (437)
Q Consensus 172 l~~~s~~~ 179 (437)
+-..|.--
T Consensus 335 Ii~isvPv 342 (431)
T COG1114 335 IIKISVPV 342 (431)
T ss_pred HHHHHHHH
Confidence 55554433
No 98
>PHA02764 hypothetical protein; Provisional
Probab=90.23 E-value=16 Score=34.26 Aligned_cols=91 Identities=15% Similarity=0.023 Sum_probs=60.5
Q ss_pred ccccCCceeehhh-hhhhhccccccchHHHHHHhc--ChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHH
Q 013753 22 EPTRRAKWWYSTF-HCVTAMIGAGVLSLPYAMAYL--GWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (437)
Q Consensus 22 ~~~~~~~~~~~~~-~l~~~~iG~Gil~lP~a~~~~--G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~ 98 (437)
+.-|+.+.+++++ |+.....|.++ +.|+-+... |. ..+..+++.++++........+...+.|..+ .-..+.+
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~-nlLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYIS 84 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNV-NLLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIR 84 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhH
Confidence 4567778888887 55555555544 556543333 43 2566777788888888888888888888766 5566789
Q ss_pred HHhCCCccCcchhhHHHHH
Q 013753 99 HAFGPKLGPWIVLPQQLIV 117 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~ 117 (437)
+++||+.| .+..+..+..
T Consensus 85 RAFGP~~G-FLvG~a~WLt 102 (399)
T PHA02764 85 TAFSSKFY-TIFGISLWLT 102 (399)
T ss_pred HhhCccHH-HHHHHHHHHH
Confidence 99999766 3444444433
No 99
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=90.17 E-value=23 Score=35.88 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=70.1
Q ss_pred CceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhh-chhccCCcccCCHHHHHHHHhCCCc
Q 013753 27 AKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMIN-LHECVPGVRFDRYIDLGRHAFGPKL 105 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~-~~~~~~~~~~~~y~~~~~~~~G~~~ 105 (437)
.+.+...-+=+.++-|+|.+-=|..-++.||.++.+-+++-+++.---.-.+.- ...|++++ |..|++++..|++.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~---Si~~ia~~~lG~~a 128 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGK---SIGEIAGKYLGRTA 128 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCc---cHHHHHHHHhhhhH
Confidence 466777888899999999999999999999998887776655443332222222 22345554 99999999999965
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhhcccH
Q 013753 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCL 133 (437)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~y~~~~~~~l 133 (437)
| .+..+..++........+.....+.+
T Consensus 129 ~-~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 129 K-VFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 56666555555555555554444443
No 100
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=87.39 E-value=35 Score=34.52 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCc-ch
Q 013753 93 YIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI-NS 171 (437)
Q Consensus 93 y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l-~~ 171 (437)
++-++++.-|+ .|+ ++|+...+...+....-+-.....++.-++...+...+......+++...+++-.+....+ |.
T Consensus 164 ~pl~g~~~~g~-~g~-~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kG 241 (485)
T PF02028_consen 164 YPLLGDRINGP-LGK-IIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIFTISAVSGLDKG 241 (485)
T ss_dssp HHHHHHHHHSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred hhhcCCcccCc-chh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455555554 564 6777777766666666566666667777776664322111122223334444455555566 44
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 013753 172 VSSVSLAAAVMSLSYSTIAW 191 (437)
Q Consensus 172 l~~~s~~~~~~~~~~~~i~~ 191 (437)
+++.|.+.+.+.+..++.+.
T Consensus 242 Ik~LS~~n~~l~~~ll~~vl 261 (485)
T PF02028_consen 242 IKRLSNINVYLAFALLLFVL 261 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888777775554444333
No 101
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=84.91 E-value=45 Score=33.36 Aligned_cols=253 Identities=15% Similarity=0.110 Sum_probs=124.6
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHHHhcCh--hHHHHHHHHHHHHHHHHHHHHhhchhccCCcc-cCCHHHHHH
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGW--GPGTMVLVISWVTTLNTMWQMINLHECVPGVR-FDRYIDLGR 98 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~--~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~-~~~y~~~~~ 98 (437)
+.+|+=|+++-...=....++.+-.-+...-.+.|+ .-+++..++. ..++...+.. +..||.. +-++.-..|
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG---~~~~~~f~~l--ns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVG---YLFTAIFLVL--NSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHH---HHHHHHHHHH--ccCCCcccccceeeeee
Confidence 345667888888888888888887777766667773 3344433322 2222222222 2234432 126677777
Q ss_pred HHhCCCccCcchhhHHHHHHHHHHHHHH---HhhcccHHHHHHHhccCCC---------cccchhh--HHHHHHHHHHhh
Q 013753 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYM---VTGGKCLKKFVEMACSHCK---------PLRQTFW--ILIFGSLHFFLS 164 (437)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~~~~~~y~---~~~~~~l~~~~~~~~~~~~---------~~~~~~~--~~i~~~i~~pl~ 164 (437)
..||- .| ..+.++......|+-|. -..++.++-+++...+... ......+ .+++=++.+|..
T Consensus 126 ~sFGi-yg---S~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 126 SSFGI-YG---SLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eehhh-hH---hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 77774 34 33344445555555443 4567777777776553211 1122222 234445556666
Q ss_pred cCC--CcchhhHHHHHHHHHHHHHHHHHHHhhhc--cccccCccccccCCCchhhHhHHHHHHHHHHHHhc-CCcchHhh
Q 013753 165 QLP--DINSVSSVSLAAAVMSLSYSTIAWAGSLS--HGRIENVSYAYKHTSSADYMFRVFNALGQISFAFA-GHAVALEI 239 (437)
Q Consensus 165 ~~~--~l~~l~~~s~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i 239 (437)
+.| +++.+-..+.+.+...... .+++... ++.-+-.+. ..........+.+..++...+=.|. ..-|.|..
T Consensus 202 ~~~p~~ir~lf~~ka~~t~fA~~g---~LIw~l~kAhG~G~l~~~-~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDF 277 (572)
T KOG2466|consen 202 WFPPYKIRHLFTWKAVLTPFAAFG---FLIWLLKKAHGLGHLFDS-KSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDF 277 (572)
T ss_pred eccHHHhhhHHHHHHhhhHHHHHH---HHHHHHHhcCCccccccC-CCcccccchhHHHHHHHHHHHhccchhhccCchh
Confidence 665 4555544444444432222 2222222 221111111 1111111222333334433333332 33677788
Q ss_pred hhhCCCCCCCCcccchhhhhHHHHHHHHHHHH----hHHHHHhhhcCCCCch--hhhhcc
Q 013753 240 QATIPSTPEKPSKILMWKGALGAYFVNAICYF----PVALIGYWAFGQDVDD--NVLMAL 293 (437)
Q Consensus 240 ~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~----~~g~~gy~~fg~~~~~--~il~~~ 293 (437)
.+. -|+|.+.. ..-.+++.+.+.+-. +.+..++..||...-+ ++++++
T Consensus 278 sRF----~ksp~a~~--~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 278 SRF----AKSPNAIW--WGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred Hhh----cCCCCccc--hhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 887 68886644 333344444444444 4445678899976333 666665
No 102
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=84.07 E-value=6.6 Score=38.88 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=59.2
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcch
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 171 (437)
=.....++.+|+ +|+.+..+..+..|+-++++-....+++.++..+ .+++.+..+..++.++++.. .+++
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------isY~~~v~i~~l~S~~lSn~-G~~~ 335 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------LSYRTLVFILGGFSMVVSNL-GLSQ 335 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHHHHHHh-HHHH
Confidence 456678899998 7999999999999999999999988888776642 45577778888888887776 4555
Q ss_pred hhHHHHH
Q 013753 172 VSSVSLA 178 (437)
Q Consensus 172 l~~~s~~ 178 (437)
+-..+.-
T Consensus 336 II~~s~P 342 (439)
T PRK15433 336 LIQISVP 342 (439)
T ss_pred HHHHHHH
Confidence 5444433
No 103
>PRK09950 putative transporter; Provisional
Probab=79.57 E-value=76 Score=32.32 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=51.6
Q ss_pred CHHHHHHHHhCCC----ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCC
Q 013753 92 RYIDLGRHAFGPK----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLP 167 (437)
Q Consensus 92 ~y~~~~~~~~G~~----~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 167 (437)
+.++..+-.+|+| .|+ ++|+...+...+....-+-....+++.-+....+...+......++....+++-++...
T Consensus 168 ~iss~~~pllG~~~~g~~G~-~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S~~~ 246 (506)
T PRK09950 168 SLSGIIAAITGVKPQGPWGR-LVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLSSYI 246 (506)
T ss_pred chHHhhHhhcCCCCCCcchH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777753 343 56666666655555555555566666666666543222212222233333444555555
Q ss_pred Cc-chhhHHHHHHHHHHHHH
Q 013753 168 DI-NSVSSVSLAAAVMSLSY 186 (437)
Q Consensus 168 ~l-~~l~~~s~~~~~~~~~~ 186 (437)
.+ |.+++.|.+.+.+.+..
T Consensus 247 Gl~kGIk~LS~~N~~la~~l 266 (506)
T PRK09950 247 GIDNGLQRLSKMVGWGAFLF 266 (506)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 55 66677777776644443
No 104
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=73.19 E-value=1.1e+02 Score=31.07 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=61.6
Q ss_pred CccccCCceeehhhhhhhhccccccchHHH----H-HHhc--Chh--------HHHHHHHHHHHHHHHHHHHHhhchh--
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPY----A-MAYL--GWG--------PGTMVLVISWVTTLNTMWQMINLHE-- 83 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~----a-~~~~--G~~--------~g~~~l~~~~~~~~~s~~~l~~~~~-- 83 (437)
+++.+..+| .++++.+-+|.|++..+. . +.+- |.. .+.....+-+-+.-++.+.+.-.+-
T Consensus 85 ~PEfs~~SW---~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaY 161 (537)
T COG1292 85 KPEFSTLSW---LAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAY 161 (537)
T ss_pred CCCcchhHH---HHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhe
Confidence 455566666 899999999999876431 1 1111 111 2233333333333333333322111
Q ss_pred ---c--cCCc-ccCCHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhcc
Q 013753 84 ---C--VPGV-RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 142 (437)
Q Consensus 84 ---~--~~~~-~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~ 142 (437)
| .|.. +..=|+-++++.-|+ +|+ .+|++.++...+....-.-+...+++.-+....+
T Consensus 162 f~~rk~~pl~lss~l~Pllg~~~~G~-~G~-~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~g 224 (537)
T COG1292 162 FHYRKGLPLLLSSALYPLLGERIKGP-IGH-AVDILAIIATLFGIATSLGLGALQLTAGLSYLFG 224 (537)
T ss_pred eeEecCCCchhhhhhhhhhcccccCc-cch-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 1 1111 001245555565565 675 6888877777666666566666677776666653
No 105
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=72.74 E-value=1e+02 Score=30.50 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=93.9
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHH-hHHHHHhhhcCCCCchhhhhccCCChHHHHHHHHHHH--HHHHHhcccccccHH
Q 013753 247 PEKPSKILMWKGALGAYFVNAICYF-PVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVV--VHVIGSYQVFAMPVF 323 (437)
Q Consensus 247 m~~p~~~~~~~~~~~~~~~~~~~Y~-~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~--~~~~~s~pl~~~~~~ 323 (437)
+.+--|++-+++...+..+.....+ +....++..|+.-.+...-+-....+-...+...... .+...+++...++..
T Consensus 215 i~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~ 294 (415)
T COG0814 215 LVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALF 294 (415)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4444444545545555554444444 6667778777664444444444454445555554433 333378888888888
Q ss_pred HHHHHHhhhc----------CCCCCchhhHHHHHHHHHHHHHHHHhhcc-chhHHhhhhcccccchhHhhhhhhhhhhhc
Q 013753 324 HLLEGMMIKR----------MNFPPGAAVRVVARSAYVAFTLFVGVTFP-FFGDLLGFFGGFGFTPTSYFLPSIMWLVIK 392 (437)
Q Consensus 324 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~la~~~p-~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~ 392 (437)
......+... .++.+.+..|..........+.+.++..| -+....+.+|.+..++.+-++|.+++++-+
T Consensus 295 Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~ 374 (415)
T COG0814 295 AIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPR 374 (415)
T ss_pred HHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655432211 11123445466677777788888888877 488888999989999999999999999986
Q ss_pred CCC
Q 013753 393 KPK 395 (437)
Q Consensus 393 ~~~ 395 (437)
+..
T Consensus 375 ~~~ 377 (415)
T COG0814 375 KLI 377 (415)
T ss_pred Hhc
Confidence 543
No 106
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=70.72 E-value=1.4e+02 Score=31.28 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=54.2
Q ss_pred ceeehhhhhhhhccccc-cchHHHHHHhcCh----hHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 28 KWWYSTFHCVTAMIGAG-VLSLPYAMAYLGW----GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~----~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
+..+-.+..++-.+|-| +.=.|+...+-|. ++-.+.+++.|+-..+--..+++-..+-|-. .+.+++-..=|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~---~wrri~Pif~G 115 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVS---VWRRICPIFKG 115 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHH---HHHHhChHhcC
Confidence 66778889999999999 5669988665554 3344444445544444444444433321111 22223322223
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHh
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 140 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~ 140 (437)
.|.. ..+......+-|.+.++-.+-.++..+
T Consensus 116 --vG~a-----~v~~~~~~~~Yy~viiaw~l~Yl~~sf 146 (629)
T KOG3660|consen 116 --VGWA-----SVVISALLAIYYIVILAWALYYLFSSF 146 (629)
T ss_pred --ccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3422 222223335556666666666655544
No 107
>PRK09928 choline transport protein BetT; Provisional
Probab=67.62 E-value=1.7e+02 Score=30.95 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=72.8
Q ss_pred ccccCCceeehhhhhhhhccccccchHH----HH-HHh--cCh-------hHHHHHHHHHHHHHHHHHHHHhh---chhc
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLP----YA-MAY--LGW-------GPGTMVLVISWVTTLNTMWQMIN---LHEC 84 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP----~a-~~~--~G~-------~~g~~~l~~~~~~~~~s~~~l~~---~~~~ 84 (437)
++..+.+| ..+++.+-+|+|++.-- .. +.+ .|- -.+.....+=+-+..++.+.+.- +.-.
T Consensus 91 PefS~~sW---~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~ 167 (679)
T PRK09928 91 PEFSLLSW---AAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFS 167 (679)
T ss_pred CCCCcchH---HHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44444555 89999999999987633 11 211 121 01222223333333333333322 1111
Q ss_pred cCCcccCCHHHHHHHHhCCC----ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHH
Q 013753 85 VPGVRFDRYIDLGRHAFGPK----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLH 160 (437)
Q Consensus 85 ~~~~~~~~y~~~~~~~~G~~----~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~ 160 (437)
++.+..-+.++..+-.+|+| .|+ ++|+...+...+....-+-+...+++.-+...++...+......+++...++
T Consensus 168 yr~~~pl~issal~pllG~ri~G~~G~-~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~~i 246 (679)
T PRK09928 168 YRYNLPLTIRSALYPIFGKRINGPIGH-SVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSVII 246 (679)
T ss_pred hcCCCCCchhHhhhhhcCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 11111124555555555532 564 5666555555444444444455555666655554322111122222223333
Q ss_pred HHhhcCCCc-chhhHHHHHHHHHHHHH
Q 013753 161 FFLSQLPDI-NSVSSVSLAAAVMSLSY 186 (437)
Q Consensus 161 ~pl~~~~~l-~~l~~~s~~~~~~~~~~ 186 (437)
+-++....+ |.+++.|.+.+.+.+..
T Consensus 247 ~~~S~~sGl~KGIk~LS~lN~~La~~L 273 (679)
T PRK09928 247 ATISVTSGVNKGIRVLSELNVLLALGL 273 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 55566666666544333
No 108
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=62.66 E-value=52 Score=28.64 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=47.3
Q ss_pred hhHHhhhhcccccchhHhhhhhhhhhhhcCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013753 364 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK----------RFSPKWIINWASIFIGVFIMLASTIGGFRNIVA 428 (437)
Q Consensus 364 ~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~gt~~~i~~~~~ 428 (437)
++.-+-+.|++.+.-+..++|+...+..+++. .+|.+.....+...+|++..+.+..-+..++.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445567788888899999999999998762 223344667777778888887777777777665
No 109
>KOG3761 consensus Choline transporter [Lipid transport and metabolism]
Probab=57.56 E-value=10 Score=35.45 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=81.7
Q ss_pred cccCCceeehhhhhhhhcccccc-chHHHHHHhcChhHHHHHH-HHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHH
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGV-LSLPYAMAYLGWGPGTMVL-VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gi-l~lP~a~~~~G~~~g~~~l-~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~ 100 (437)
..|+++.....+.+..+-+|.|- -.-.-+..+.|+.+...-- +.-++--.....+..+- .++++.-+.-|=-++.
T Consensus 48 ~grdig~lvg~ftmtatwvgg~yingtaealy~~gygl~~~qapigyaislilggl~fak~---mr~egyitmldpfq~~ 124 (591)
T KOG3761|consen 48 AGRDIGLLVGGFTMTATWVGGAYINGTAEALYNGGYGLAGAQAPIGYAISLILGGLFFAKK---MREEGYITMLDPFQHI 124 (591)
T ss_pred ccccceeeeeeEEEEEEEecceeeccchhhhccCCcccccccCcchhhHHHHhhhhhhcch---hhhcCcEEeechHHHH
Confidence 45789999999999999999884 4456666666543322111 11111111223333332 2233322455556778
Q ss_pred hCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
+|+|.|-.+.--.+.-. .....+.....+..++.++ +.+-..-+++.+++.....+...+-..++.-.+..
T Consensus 125 ygkriggll~ipallge-~fwaaai~salgatisvii--------~idm~~sv~isa~ia~~yt~~gg~yavaytdvvql 195 (591)
T KOG3761|consen 125 YGKRIGGLLFIPALLGE-MFWAAAIFSALGATISVII--------DIDMHASVIISACIATFYTFTGGLYAVAYTDVVQL 195 (591)
T ss_pred hhhhccceEeeHHHHhH-HHHHHHHHHHhcCeEEEEE--------eccccHhHHHHHHHHHHHhhccceEEEeehhHHHH
Confidence 88887754332222222 2223333333343333322 22334445555666666666778888888888888
Q ss_pred HHHHHH
Q 013753 181 VMSLSY 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
+|+++-
T Consensus 196 fcifvg 201 (591)
T KOG3761|consen 196 FCIFVG 201 (591)
T ss_pred HHHHhh
Confidence 876654
No 110
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=52.63 E-value=2.6e+02 Score=28.09 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=36.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhcc--chhHHhhhhcccccchhHhhhhhhhhhhh
Q 013753 338 PGAAVRVVARSAYVAFTLFVGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVI 391 (437)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~ 391 (437)
++|.+|.+.|.+.++++++++.... +++.+.++.-.+-+..+-|..-+++++..
T Consensus 354 ~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS 409 (503)
T KOG1291|consen 354 PPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTS 409 (503)
T ss_pred hHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhc
Confidence 3567777889999999999998764 56666666655554445554444444443
No 111
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=51.72 E-value=2.5e+02 Score=27.72 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhc---CCC-CchhhhhccCC---ChHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAF---GQD-VDDNVLMALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~f---g~~-~~~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 329 (437)
++-.++......+|...+..|...- ++. ....++..... ++....+..+.+.++-+++---....+.|.+.+.
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~ 307 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKL 307 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555677777788988888884333 222 22345544422 2333444445555555555555555555666555
Q ss_pred hhhcCCCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhh
Q 013753 330 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLV 390 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~ 390 (437)
+.+ -+... ..++....++++|. -.++.++.+ ....+..+.|....+.
T Consensus 308 ~p~-----~SY~~---~v~if~i~sflvan--~GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 308 VPK-----LSYKT---WVIIFTLISFLVAN--LGLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred ccc-----ccHHH---HHHHHHHHHHHHHH--hhHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 541 11111 22223333344432 234444443 3355677777766544
No 112
>COG3817 Predicted membrane protein [Function unknown]
Probab=48.72 E-value=94 Score=28.17 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013753 399 PKWIINWASIFIGVFIMLASTIGGFRNIVADAST 432 (437)
Q Consensus 399 ~~~~~~~~~~~~g~~~~v~gt~~~i~~~~~~~~~ 432 (437)
|.-++.-.+..+|.++...|.-.+|.++.+.+-.
T Consensus 166 wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i~ 199 (313)
T COG3817 166 WAAILPQMLAALGAVFASAGVGDVIAHLISEIIP 199 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4446677788899999999999999998877543
No 113
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=47.79 E-value=1.3e+02 Score=23.46 Aligned_cols=84 Identities=6% Similarity=0.016 Sum_probs=44.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhc---cchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHH
Q 013753 337 PPGAAVRVVARSAYVAFTLFVGVTF---PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVF 413 (437)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~la~~~---p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~g~~ 413 (437)
++.+.+++.+.+++.++-++++... ..+..=..++.-...+.+..++=-++.+-+.+++..+|- ........+-.+
T Consensus 13 ~H~s~k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~-~~~~iFt~~i~v 91 (111)
T COG3125 13 SHGSLKSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGRWN-MGALIFTIFIIV 91 (111)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhcccCCccccee-hHHHHHHHHHHH
Confidence 3455888888777776666666543 234444444444445556666555555555555444433 223333344444
Q ss_pred HHHHHHHH
Q 013753 414 IMLASTIG 421 (437)
Q Consensus 414 ~~v~gt~~ 421 (437)
+.+.|++.
T Consensus 92 ivvvGS~W 99 (111)
T COG3125 92 IVVVGSIW 99 (111)
T ss_pred HHHHHHHH
Confidence 44555543
No 114
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=42.76 E-value=1.8e+02 Score=27.86 Aligned_cols=40 Identities=15% Similarity=0.007 Sum_probs=29.6
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhcc
Q 013753 254 LMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL 293 (437)
Q Consensus 254 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~ 293 (437)
.-++++..+...+...-+.+...|+.......++++..++
T Consensus 45 ~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 45 HTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 3458888888888888888999999888665555554444
No 115
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=38.23 E-value=45 Score=33.34 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=85.3
Q ss_pred CCCccCcchhhHHHHHHHHHHHH-HHHhhcccHHHHHHHhccCCCcccchhh-HHHHHHHHHHhhcCCC-cchhhHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIV-YMVTGGKCLKKFVEMACSHCKPLRQTFW-ILIFGSLHFFLSQLPD-INSVSSVSLA 178 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~-y~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~i~~~i~~pl~~~~~-l~~l~~~s~~ 178 (437)
|.|.|.+++.++..+.+++..++ ..+..+.-+..++|.+. +.+|-.. ..+.+.++.|=-++++ -+.+...+..
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi----nIrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lssy 414 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI----NIRRGALICAIIAWAICPWNLLSSSSKFLTALSSY 414 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE----EecccHHHHHHHHHHhCchHHhccccHHHHHHHHH
Confidence 44678788888888888887764 34445555566666544 2333332 3344666677766664 3444555555
Q ss_pred HHHHHHHHHHHHHHhhhc-cccccCccccccCCCchh-hHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccc--
Q 013753 179 AAVMSLSYSTIAWAGSLS-HGRIENVSYAYKHTSSAD-YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL-- 254 (437)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~-- 254 (437)
++++.-+.-++++=+... ++.. +.+......+... -.+.=..-=..+.|-.++.+++|.+..|+.++-|.|+-..
T Consensus 415 svfLspiagViiaDyF~iRk~~~-~i~~~y~~~~g~yY~~~~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~ 493 (572)
T KOG2466|consen 415 SVFLSPIAGVIIADYFLIRKGYY-KITHLYSLSKGSYYYFKKGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKL 493 (572)
T ss_pred HHHHhhccceEeehhheeeccee-eeeeeeecCCCceeeeecCccHHHHHHHHhccccCCcchhhhcCcccccccceEEE
Confidence 555333332222222222 2221 1111111100000 0001111223456667788999999999665455554321
Q ss_pred hhhhhHHHHHHHHHHHHhHH
Q 013753 255 MWKGALGAYFVNAICYFPVA 274 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~Y~~~g 274 (437)
.......++.+.+..|..+.
T Consensus 494 yy~~yf~sf~isf~vYwiLc 513 (572)
T KOG2466|consen 494 YYLDYFFSFLISFLVYWILC 513 (572)
T ss_pred EechHHHHHHHHHHHHHHHH
Confidence 11234567777777777554
No 116
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=37.72 E-value=4.7e+02 Score=26.87 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.2
Q ss_pred CHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHH
Q 013753 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE 138 (437)
Q Consensus 92 ~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~ 138 (437)
...++-..+.|+| |...+.....+..+..+++-.+..++..-++-.
T Consensus 326 p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 6788888899987 557888888888888888877777766655544
No 117
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=36.68 E-value=2.7e+02 Score=27.59 Aligned_cols=197 Identities=9% Similarity=-0.071 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHH-----HHHhHHHHHh---hhcCCCCchh
Q 013753 217 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAI-----CYFPVALIGY---WAFGQDVDDN 288 (437)
Q Consensus 217 ~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~-----~Y~~~g~~gy---~~fg~~~~~~ 288 (437)
..+....-.+..-...++..-|..+. ..++-.+..+........+.. -|+.+|-.-- +.--|...++
T Consensus 198 ~~~pi~~faf~Ch~n~~~i~~El~~~-----s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~ 272 (411)
T KOG1305|consen 198 YALPIFVFAFTCHSNVFPIYNELKDR-----SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNN 272 (411)
T ss_pred hhhhhhheeeeccccceeeeeeeeCc-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccch
Confidence 33444445555566677777777665 222222333433333333333 4444442111 1111445556
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh-hcCC-CCCchhhHHHHHHHHHHHHHHHHhhccchhH
Q 013753 289 VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI-KRMN-FPPGAAVRVVARSAYVAFTLFVGVTFPFFGD 366 (437)
Q Consensus 289 il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~ 366 (437)
.+.+++........+...+....+..+|+..+ +++.+.+... .... .++....-..+-......... -..+.++-.
T Consensus 273 ~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~-l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~-~p~i~~i~~ 350 (411)
T KOG1305|consen 273 LLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN-LDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIF-VPSIGTIFG 350 (411)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHH-hccHHHHHH
Confidence 67778877777777778888888999999999 5555544443 2222 222333333322222222222 222233334
Q ss_pred HhhhhcccccchhHhhhhhhhhh--hhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013753 367 LLGFFGGFGFTPTSYFLPSIMWL--VIKKPKRFSPKWIINWASIFIGVFIMLASTI 420 (437)
Q Consensus 367 ~~~~~Ga~~~~~~~~i~P~l~~l--~~~~~~~~~~~~~~~~~~~~~g~~~~v~gt~ 420 (437)
+++-+++.+..++.--.=-+.-. +.++++.....++.+..+..+|+..++....
T Consensus 351 ~vGAT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 406 (411)
T KOG1305|consen 351 FVGATSSTSISFILPALYYLKASKKKSREPLGALIFLILGVLLSIIGVAVMIYDLL 406 (411)
T ss_pred HhhhhhhhhhHHHHHHHhhheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333222222322 2333333333456667777777777665543
No 118
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=35.46 E-value=69 Score=21.21 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCCCc
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQDVD 286 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 286 (437)
+-+.+-.++.+++|++.|+.-+..+.++..
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 666777888899999999998877766543
No 119
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=35.37 E-value=4.8e+02 Score=26.26 Aligned_cols=162 Identities=10% Similarity=0.062 Sum_probs=72.2
Q ss_pred CccccCCceeehhhhhhhhccccccchHH----HH-HHh--cChh---------HHHHHHHHHHHHHHHHHHHHhh---c
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLP----YA-MAY--LGWG---------PGTMVLVISWVTTLNTMWQMIN---L 81 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP----~a-~~~--~G~~---------~g~~~l~~~~~~~~~s~~~l~~---~ 81 (437)
+++.++.+| ..+++.+-+|+|++.-. .. +++ .|.- .+.....+=+-+..++.+.+.- .
T Consensus 34 kPefS~~sW---~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~a 110 (453)
T TIGR00842 34 KPEFSTLSW---LAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALA 110 (453)
T ss_pred CCCCcchHH---HHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 344455555 88999999999987643 22 211 1111 1122222222222233222222 1
Q ss_pred hhccCCcccCCHHHHHHHHhCCC----ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHH
Q 013753 82 HECVPGVRFDRYIDLGRHAFGPK----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFG 157 (437)
Q Consensus 82 ~~~~~~~~~~~y~~~~~~~~G~~----~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 157 (437)
.-.+++++..+.++..+-.+|+| .|+ ++|+...+...+....-+-....+++.-+....+...+......++...
T Consensus 111 Y~~~rk~~~~~iss~~~pllG~~~~g~~g~-~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~~~~ii~~i 189 (453)
T TIGR00842 111 YFHVRKGLPLRLSSALVPLLGERVNGPIGK-AIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWLQALIILCV 189 (453)
T ss_pred HhheecCCCCchhhhhhcccCCcccCccHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 11122222236777777777753 343 4555555554444444444455555555555554322111111112222
Q ss_pred HHHHHhhcCCCc-chhhHHHHHHHHHHHHH
Q 013753 158 SLHFFLSQLPDI-NSVSSVSLAAAVMSLSY 186 (437)
Q Consensus 158 ~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~ 186 (437)
.+++-.+....+ |.+++.|.+.+.+.+..
T Consensus 190 ~~~f~~S~~~Gl~kGIk~LS~~n~~l~~~l 219 (453)
T TIGR00842 190 TALACISVASGVGKGIKILSNINMALAFLL 219 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333 45566666665544333
No 120
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=33.80 E-value=1e+02 Score=27.64 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Q 013753 400 KWIINWASIFIGVFIMLASTIGG--FRNIVADA 430 (437)
Q Consensus 400 ~~~~~~~~~~~g~~~~v~gt~~~--i~~~~~~~ 430 (437)
.+|+.|+++++|+++.+-++++= |+.+-+.+
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIKVRRMEEKY 254 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHH
Confidence 36888999999999999888754 34444433
No 121
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=33.61 E-value=75 Score=23.68 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCC
Q 013753 222 ALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 284 (437)
Q Consensus 222 ~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 284 (437)
..|++.-+..|..+..+..+. ++|.+..+ |+ .....++..+-++.|++-|..||..
T Consensus 16 i~GiiLL~~aCIfAfidfsK~-----~~~~~~~w-Ra-lSii~FI~giil~lG~~i~s~ygr~ 71 (92)
T PF05767_consen 16 IGGIILLIAACIFAFIDFSKN-----TKPTDYTW-RA-LSIICFILGIILTLGIVIFSMYGRY 71 (92)
T ss_pred HHHHHHHHHHHHHHhhhhccC-----CCCchhHH-HH-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777888885 77877553 33 3333444555677888888888754
No 122
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.36 E-value=9.1e+02 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHhHHHHHhhhc
Q 013753 259 ALGAYFVNAICYFPVALIGYWAF 281 (437)
Q Consensus 259 ~~~~~~~~~~~Y~~~g~~gy~~f 281 (437)
+...+.+++.+|++++++.|..-
T Consensus 25 ~~gIlLlllAlfL~lALiSYsPs 47 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNPS 47 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 44555667788888888888653
No 123
>PRK11281 hypothetical protein; Provisional
Probab=28.62 E-value=5.5e+02 Score=29.25 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=25.4
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCC
Q 013753 247 PEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 283 (437)
Q Consensus 247 m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 283 (437)
.++.+...-++++.+++..+....+.+..+||+.+..
T Consensus 534 ~~~D~~~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 534 LKRDSQLHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445778888888777788888888877753
No 124
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=28.29 E-value=60 Score=20.81 Aligned_cols=28 Identities=25% Similarity=0.062 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCC
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQD 284 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 284 (437)
.+...++.+..++..+.|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4566677777777777888888888854
No 125
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=27.98 E-value=6.7e+02 Score=25.66 Aligned_cols=159 Identities=13% Similarity=-0.021 Sum_probs=73.0
Q ss_pred CceeehhhhhhhhccccccchH----HHHHH-h--cCh--------hHHHHHHHHHHHHHHHHHHHHhh---chhccCCc
Q 013753 27 AKWWYSTFHCVTAMIGAGVLSL----PYAMA-Y--LGW--------GPGTMVLVISWVTTLNTMWQMIN---LHECVPGV 88 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~Gil~l----P~a~~-~--~G~--------~~g~~~l~~~~~~~~~s~~~l~~---~~~~~~~~ 88 (437)
-+.++=..+++.+-+|+|++.- |.... + .|. -.+.....+=+-+..++.+.+.- ....++.+
T Consensus 86 fs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~~ 165 (504)
T PRK03356 86 FSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVRK 165 (504)
T ss_pred ccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444448899999999998764 22211 1 121 01222222222233333322222 21112222
Q ss_pred cc-CCHHHHHHHHhCCC-----ccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHH
Q 013753 89 RF-DRYIDLGRHAFGPK-----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFF 162 (437)
Q Consensus 89 ~~-~~y~~~~~~~~G~~-----~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 162 (437)
+. ...++..+-.+|+| .|+ ++|+...+...+....-+-....+++.-+....+...+......+++...+++-
T Consensus 166 ~p~l~iss~~~pllG~~~~~g~~G~-~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~i~~if~ 244 (504)
T PRK03356 166 MDVIRPSSTLVPLVGEKHAKGLFGT-IVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNA 244 (504)
T ss_pred CCcccHHHHHHHHcCCCcccCchHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 21 15677777777742 343 466555555554444445555556666666655432222222222222333444
Q ss_pred hhcCCCc-chhhHHHHHHHHHHHHH
Q 013753 163 LSQLPDI-NSVSSVSLAAAVMSLSY 186 (437)
Q Consensus 163 l~~~~~l-~~l~~~s~~~~~~~~~~ 186 (437)
.+....+ |.+++.|.+.+.+.+..
T Consensus 245 ~S~~~Gl~kGIk~LS~~N~~la~~l 269 (504)
T PRK03356 245 ICVACGLQKGVRIASDVRSYLSFLM 269 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 45566666665544433
No 126
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=27.72 E-value=7.2e+02 Score=25.94 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=53.7
Q ss_pred Cceeehhhhhhhhccccc-cchHHHH-HHhcCh---hHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 27 AKWWYSTFHCVTAMIGAG-VLSLPYA-MAYLGW---GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 27 ~~~~~~~~~l~~~~iG~G-il~lP~a-~~~~G~---~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
.+..+-..-.++..++-| +--.||- +++.|+ ++-.+++++.|+-..|-=..+++-++ .+..+ -...++-..-
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~g--vw~ri~P~l~ 158 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCIG--VWRRIAPALK 158 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccchh--HHHHhCHHhc
Confidence 345666777888888888 6778987 455554 45566666777666665566666443 22221 4556666555
Q ss_pred CCCccCcchhhHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQV 119 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~ 119 (437)
| .|+-++.++.....+
T Consensus 159 G--igy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 159 G--IGYAICLIAFFVGLY 174 (629)
T ss_pred C--CchhhhHHHHHHHHH
Confidence 5 576666666555443
No 127
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=26.07 E-value=3.4e+02 Score=23.08 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=4.9
Q ss_pred hhhHHHHHHHH
Q 013753 340 AAVRVVARSAY 350 (437)
Q Consensus 340 ~~~~~~~~~~~ 350 (437)
+..|.......
T Consensus 95 ~~~~~~~~~~~ 105 (205)
T PF07695_consen 95 RLRRLLLILLI 105 (205)
T ss_pred hHHHHHHHHHH
Confidence 45554444333
No 128
>CHL00020 psbN photosystem II protein N
Probab=26.04 E-value=54 Score=20.70 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhhcCCC
Q 013753 257 KGALGAYFVNAICYFPVALIGYWAFGQD 284 (437)
Q Consensus 257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 284 (437)
.+...++.+..++..+.|..-|.+||..
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 3455666667777777777788888854
No 129
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=24.78 E-value=2.8e+02 Score=28.12 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHHHHHhhcccHHHHHHHhccC----CCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHH
Q 013753 121 CDIVYMVTGGKCLKKFVEMACSH----CKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSY 186 (437)
Q Consensus 121 ~~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 186 (437)
.+..+.+...|.....+...... .+...+..|.++..++...+....+++.++..+.++..-....
T Consensus 401 l~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v 470 (485)
T PF02028_consen 401 LIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFV 470 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44455666667766666655422 1234555666666666555555567888877777776643333
No 130
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=24.55 E-value=80 Score=19.99 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHhhhcCCC
Q 013753 258 GALGAYFVNAICYFPVALIGYWAFGQD 284 (437)
Q Consensus 258 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 284 (437)
+...++.+..++-.+.|...|.+||..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 345566666677777888888888853
No 131
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=23.19 E-value=3.4e+02 Score=20.58 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 013753 340 AAVRVVARSAYVAFTLFVG 358 (437)
Q Consensus 340 ~~~~~~~~~~~~~~~~~la 358 (437)
.+++.++..++.++-++++
T Consensus 5 ~~~~yviGFiLSiiLT~i~ 23 (94)
T TIGR02901 5 FPWKHVNGFILSLLLTFLA 23 (94)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3555555555444433333
No 132
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=23.11 E-value=3.4e+02 Score=22.57 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=10.8
Q ss_pred hhHhhhhhhhhhhhcCCC
Q 013753 378 PTSYFLPSIMWLVIKKPK 395 (437)
Q Consensus 378 ~~~~i~P~l~~l~~~~~~ 395 (437)
.+.-++|+++.++.+-++
T Consensus 73 l~~~vlP~~~l~~~~i~~ 90 (156)
T PF08019_consen 73 LLLGVLPALLLWRVRIKK 90 (156)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344457888877665433
No 133
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.96 E-value=9.3e+02 Score=27.47 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=20.6
Q ss_pred cccchhhhhHHHHHHHHHHHHhHHHHHhhhcC
Q 013753 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFG 282 (437)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 282 (437)
+...-++++.+++..+.-.=+++...||..+.
T Consensus 516 ~~~~T~~al~~t~l~alP~pl~~~~~g~~l~~ 547 (1109)
T PRK10929 516 HFSLTLRTVFWSILVASPLPVLWAALGYGLQN 547 (1109)
T ss_pred cccccHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 33333567777777766666677778886554
No 134
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=22.53 E-value=4.1e+02 Score=26.35 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 013753 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (437)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (437)
.+|+ +|.+++.++..+..+.+.+++..+..+++..+++. ......+-++. ++..++....+++.+..++-+.
T Consensus 302 ~~g~-~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~------~~~~~~~ri~~-i~~~~~G~~~~~~~vW~~~Di~ 373 (416)
T PF01235_consen 302 VLGS-WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG------KKAIWIYRILF-IAMVFIGAVIDLDLVWDLADIA 373 (416)
T ss_pred hhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------ceEEEeeeehh-hhhhhhhhcccchhHHHHHHHH
Confidence 3464 67888999999999999999988888777777621 11111222222 2233333344677777777777
Q ss_pred HHHHHHHHHHH
Q 013753 180 AVMSLSYSTIA 190 (437)
Q Consensus 180 ~~~~~~~~~i~ 190 (437)
..++.+.-++.
T Consensus 374 ~~lmai~Nlia 384 (416)
T PF01235_consen 374 NGLMAIPNLIA 384 (416)
T ss_pred HHHHHHHHHHH
Confidence 77665544433
No 135
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=22.29 E-value=6.4e+02 Score=25.18 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCcchHhhhhhCC-CCCCCCcccchhhh-hHHHHHHHHHHHHhHH
Q 013753 219 VFNALGQISFAFAGHAVALEIQATIP-STPEKPSKILMWKG-ALGAYFVNAICYFPVA 274 (437)
Q Consensus 219 ~~~~~~~~~faf~~~~~~~~i~~~~~-~~m~~p~~~~~~~~-~~~~~~~~~~~Y~~~g 274 (437)
+...+..++|-..| .|+-+|+- ||+++|+|..+|-. ..-++++..++|+.+.
T Consensus 72 INDgLMaiFFf~VG----LEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n 125 (438)
T PRK14856 72 IDDVLMALFFLMIG----LEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLN 125 (438)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhhee
Confidence 34668888999999 77777754 68898888766633 3366777778887765
No 136
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=21.68 E-value=4e+02 Score=20.84 Aligned_cols=83 Identities=5% Similarity=-0.014 Sum_probs=36.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhc---cchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 013753 338 PGAAVRVVARSAYVAFTLFVGVTF---PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFI 414 (437)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~la~~~---p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 414 (437)
+...+.+++.+++.++-++++... ..+..-..+.--..++.+..++=..+.+-+..+++.+|. ..+.....+-+++
T Consensus 12 hgs~k~yviGFiLSliLT~i~F~lv~~~~~~~~~~~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn-~~al~Ft~~i~~i 90 (109)
T PRK10582 12 HGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFLHMNTKSDEGWN-MTAFVFTVLIIAI 90 (109)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHHhcccCCcccchH-HHHHHHHHHHHHH
Confidence 446667776666555444444432 223322222211223345555444445555444444433 3333333333444
Q ss_pred HHHHHHH
Q 013753 415 MLASTIG 421 (437)
Q Consensus 415 ~v~gt~~ 421 (437)
.+.|+..
T Consensus 91 iv~GSlW 97 (109)
T PRK10582 91 LVVGSIW 97 (109)
T ss_pred HHHHHHH
Confidence 4555543
No 137
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.21 E-value=2.2e+02 Score=21.06 Aligned_cols=54 Identities=6% Similarity=0.044 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcC
Q 013753 223 LGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 282 (437)
Q Consensus 223 ~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 282 (437)
.|++.-+-.|..+..+..++ -.+|.+..+ |++ ....++..+-+++|++.|..||
T Consensus 17 ~GIiLL~~ACIFAfidFSK~----~s~~~~~~w-Ral-Sii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKN----TSNVTDYVW-RAL-SVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHhhhhhhcc----CCCCcchhH-HHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555565555677775 236667553 333 3333344555677888888888
No 138
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=21.12 E-value=3.1e+02 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013753 405 WASIFIGVFIMLASTIGGFRNIVADAS 431 (437)
Q Consensus 405 ~~~~~~g~~~~v~gt~~~i~~~~~~~~ 431 (437)
+...++|+.-.+.|......+..+..+
T Consensus 105 ~~~~~~gl~pl~~g~~~~~~~~~~y~~ 131 (186)
T PF07086_consen 105 IGSSLFGLLPLIYGAMYYFPEVQQYYR 131 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444443333
No 139
>PRK11383 hypothetical protein; Provisional
Probab=20.38 E-value=4.9e+02 Score=21.39 Aligned_cols=58 Identities=9% Similarity=-0.018 Sum_probs=39.7
Q ss_pred HHhhhhcccccchhHhhhhhhhhhhhcCCCCC--C---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013753 366 DLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRF--S---PKWIINWASIFIGVFIMLASTIGGF 423 (437)
Q Consensus 366 ~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~--~---~~~~~~~~~~~~g~~~~v~gt~~~i 423 (437)
..++==|-.+...+.-.|+++-+-|.-|++.. . .....+|...+.++.+..+|.+.+=
T Consensus 36 ~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~l~~i~LL~iGLwNA~ 98 (145)
T PRK11383 36 MQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNAT 98 (145)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444455556667777899999887665521 1 2345689999999999888887653
No 140
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.20 E-value=2e+02 Score=22.15 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013753 402 IINWASIFIGVFIMLASTIGGF 423 (437)
Q Consensus 402 ~~~~~~~~~g~~~~v~gt~~~i 423 (437)
......+++|++.++...|..+
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888877776554
No 141
>PHA02898 virion envelope protein; Provisional
Probab=20.05 E-value=1.9e+02 Score=21.51 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCc
Q 013753 222 ALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD 286 (437)
Q Consensus 222 ~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 286 (437)
..|++.-+-.|..+..+..++ ++|++..+ |++ ..+.++..+-+++|++-|..||..-.
T Consensus 16 i~GIiLL~~ACIfAfidfSK~-----~~~~~~~w-Ral-Sii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 16 AFGIILLIVACICAYIELSKS-----EKPADSAL-RSI-SIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHheehhhcC-----CCcchhHH-HHH-HHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 345555566666666778886 77766443 333 33334445566788888888874433
Done!