Query 013753
Match_columns 437
No_of_seqs 133 out of 1361
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 8E-21 2.7E-25 188.7 21.3 357 22-396 5-380 (445)
2 3gia_A Uncharacterized protein 99.8 1.5E-17 5.3E-22 164.9 22.8 351 23-398 4-372 (444)
3 4djk_A Probable glutamate/gamm 99.7 2.9E-15 9.9E-20 151.2 25.0 353 21-393 7-394 (511)
4 2jln_A MHP1; hydantoin, transp 99.1 5.7E-08 1.9E-12 97.0 25.4 314 1-330 1-330 (501)
5 3dh4_A Sodium/glucose cotransp 98.2 0.00021 7.1E-09 71.8 23.4 156 23-191 18-175 (530)
6 2xq2_A Sodium/glucose cotransp 98.1 0.00055 1.9E-08 69.7 23.2 155 24-191 48-204 (593)
7 2a65_A Leutaa, Na(+):neurotran 96.9 0.39 1.3E-05 47.4 31.3 246 28-282 10-307 (519)
8 4ain_A Glycine betaine transpo 83.7 16 0.00054 36.0 13.1 155 22-181 94-271 (539)
9 2wsw_A BCCT family betaine/car 72.1 24 0.00083 34.4 10.5 94 93-188 181-276 (509)
10 4b4a_A TATC, SEC-independent p 18.2 4.7E+02 0.016 22.6 11.2 24 296-319 147-170 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.87 E-value=8e-21 Score=188.68 Aligned_cols=357 Identities=15% Similarity=0.098 Sum_probs=223.3
Q ss_pred ccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
+++|+.+.++..+..+++++|+|++.+|...++.|. .+++.+++.++........+.|...+.|+.+ +..++.++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 467889999999999999999999999998888886 4888888999999999999999998888866 8899999999
Q ss_pred CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhH-HHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI-LIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
||+.| ++..+..++........+....++++..+++... .+...+. .+...+..-....+..+...+++.+..
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-----SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-----ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 99877 5666666666666666666666665554433211 0001111 111222222223346777777777666
Q ss_pred HHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhH
Q 013753 181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL 260 (437)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~ 260 (437)
...+..++++++..+...++++....+. .....++.++..++...+|+|.|++......+| +|||+| +.+|++.
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e----~k~p~r-~ip~a~~ 229 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGG----BSSHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHH----hcCccc-cccHHHH
Confidence 6555544444443333222221111111 111224677889999999999999999999999 899987 7899999
Q ss_pred HHHHHHHHHHHhHHHHHhhhcCCCCc----hh---hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc
Q 013753 261 GAYFVNAICYFPVALIGYWAFGQDVD----DN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (437)
Q Consensus 261 ~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 333 (437)
.+...+.++|++..+......+.+.. ++ +..... .++...+..+...+..+.+.........+.+..+-+++
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998887777764321 11 111111 13444555666666666665555555555554443322
Q ss_pred C-------CCCCchhhHHHHHHHHHHHHHHHHhhcc----chhHHhhhhcccccchhHhhhhhhhhhhhcCCCC
Q 013753 334 M-------NFPPGAAVRVVARSAYVAFTLFVGVTFP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 396 (437)
Q Consensus 334 ~-------~~~~~~~~~~~~~~~~~~~~~~la~~~p----~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~ 396 (437)
. ..+++.+.+.+.....+...+.+....| .++.+.++.+ ....+.|.++++.+++.|++++
T Consensus 309 ~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 309 LFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp SSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred CCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 1 0123344444443333222222221222 3566666654 3456889999999999887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.78 E-value=1.5e-17 Score=164.92 Aligned_cols=351 Identities=11% Similarity=0.031 Sum_probs=219.7
Q ss_pred cccCCceeehhhhhhhhccccccchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~Gil~lP~a-~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
++|+.+.++..+..+++++|+|++..|.. ...+|. .+++.+++.+++.......+.|...+.|+.+ +..++.++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 57889999999999999999999988744 455665 6888888999999999999999998888865 7889999999
Q ss_pred CCCc-cCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhH-HHH--HHHHHHhhcCCCcchhhHHHH
Q 013753 102 GPKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI-LIF--GSLHFFLSQLPDINSVSSVSL 177 (437)
Q Consensus 102 G~~~-g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~--~~i~~pl~~~~~l~~l~~~s~ 177 (437)
||++ +.+ ..+..++........+....++++.+.++. .+...+. ++. ..+..-....+..+...+++.
T Consensus 81 G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (444)
T 3gia_A 81 GDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA-------PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEF 152 (444)
T ss_dssp CSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9862 222 234555555556666666666666654432 1112221 111 222222233346677777776
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhh
Q 013753 178 AAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWK 257 (437)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~ 257 (437)
+.....+..+++.++..+...++++.+ +...+.++.++..++...+|+|.|++.+....+| +|||+| +++|
T Consensus 153 ~~~~~~i~~~~~~ii~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e----~k~P~r-~ip~ 223 (444)
T 3gia_A 153 FIVLVKLLILGLFIFAGLITIHPSYVI----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEH----IENPKK-NVPR 223 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCGGGTS----CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG----BSSHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcC----CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH----ccCccc-chhH
Confidence 666655544444333333222222211 1223556778899999999999999999999998 899987 7899
Q ss_pred hhHHHHHHHHHHHHhHHHHHhhhcCCCCc----hhhhhc-cC--CChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHh
Q 013753 258 GALGAYFVNAICYFPVALIGYWAFGQDVD----DNVLMA-LK--RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMM 330 (437)
Q Consensus 258 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~-~~--~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~ 330 (437)
++..+...+.++|++..+......+.+.. ++.+.. .. .+++...+..+...+..+.+........-+.+..+-
T Consensus 224 ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a 303 (444)
T 3gia_A 224 AIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLA 303 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776665542211 111111 10 013344455555566666665555555555555444
Q ss_pred hhcC------CCCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhcCCCCCC
Q 013753 331 IKRM------NFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS 398 (437)
Q Consensus 331 ~~~~------~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~~~ 398 (437)
+++. +.+++.+.+.+.... +++.++... .+++.+.++.+. +..+.|.++.+.+++.||+++.+
T Consensus 304 ~dg~lP~~f~~~~~~~P~~a~~~~~--~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~ 372 (444)
T 3gia_A 304 KDGELPEFFERKVWFKSTEGLYITS--ALGVLFALL-FNMEGVASITSA--VFMVIYLFVILSHYILIDEVGGR 372 (444)
T ss_dssp HHSSCCSSCCTTSCCSCTHHHHHHH--HHHHHHHHH-SCHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHHCCC
T ss_pred HCCCCCHHHhCCCCCCCcHHHHHHH--HHHHHHHHH-cCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcCCCc
Confidence 4321 111122333222222 222222222 467777777544 45688899999999887665443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.70 E-value=2.9e-15 Score=151.25 Aligned_cols=353 Identities=10% Similarity=0.020 Sum_probs=189.3
Q ss_pred CccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHhhchh--ccCCcccCCHHHHH
Q 013753 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT-LNTMWQMINLHE--CVPGVRFDRYIDLG 97 (437)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~-~~s~~~l~~~~~--~~~~~~~~~y~~~~ 97 (437)
.+.+|+.+.++.++..++.++| +..+|. .+..|. ..++..++.+++. ......+.|... +.| .+ +...++
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~-~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~ 79 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGF-SLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWV 79 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTT-HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhH
Confidence 4577889999999999999986 677886 456664 2344444444433 337788899888 888 76 889999
Q ss_pred HHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccch-hhH-HHHHHHHHHhhcCCCcchhhHH
Q 013753 98 RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQT-FWI-LIFGSLHFFLSQLPDINSVSSV 175 (437)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~-~~~-~i~~~i~~pl~~~~~l~~l~~~ 175 (437)
++.+||++| ++..+..++........+....+..+..++. .+.. ..+.. .+. .+..++..-....+..+...++
T Consensus 80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~-~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~ 155 (511)
T 4djk_A 80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILK--WPAL-NEDPITKTIAALIILWALALTQFGGTKYTARI 155 (511)
T ss_dssp HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT--CGGG-TSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHH
T ss_pred HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccc-ccCcHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 999999877 5666666666665555555555555443320 0000 01111 111 1112222222333456666666
Q ss_pred HHHHHHHHHH-HHHHHHHhh---hccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCc
Q 013753 176 SLAAAVMSLS-YSTIAWAGS---LSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (437)
Q Consensus 176 s~~~~~~~~~-~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~ 251 (437)
+.+.....++ .+++.+... ...+.+.+.+.......+.....+...++...+|+|.|.+......+| +|||+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E----~k~P~ 231 (511)
T 4djk_A 156 AKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNE----MSNPG 231 (511)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS----SSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHh----ccCcc
Confidence 6665433111 111111111 111211111111111111111123345678889999999999999998 89998
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCch----------hhhhccC-CChHHHHHHHHHHHHHHHHhcccccc
Q 013753 252 KILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD----------NVLMALK-RPGWLIAAANLMVVVHVIGSYQVFAM 320 (437)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----------~il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~ 320 (437)
| +++|++..+..++.++|++..+......+++... ....+.. ..++...+..+...+..+.+......
T Consensus 232 k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
T 4djk_A 232 R-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIV 310 (511)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999999999999988877777643211 1112222 02455666666666666666544444
Q ss_pred cHHHHHHHHhhhcC-----C--CCCchhhHHHHHHHHHHHHHHHHhhccc--------hhHHhhhhcccccchhHhhhhh
Q 013753 321 PVFHLLEGMMIKRM-----N--FPPGAAVRVVARSAYVAFTLFVGVTFPF--------FGDLLGFFGGFGFTPTSYFLPS 385 (437)
Q Consensus 321 ~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~la~~~p~--------~~~~~~~~Ga~~~~~~~~i~P~ 385 (437)
..-+.+..+-+++. . .+++.+.+.+.....+ ..++.+..++ ++.+.++.+. ...+.|.+|.
T Consensus 311 ~~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~~~~--~~l~~~~~~~~~~~~~~~f~~l~~~~~~--~~~~~y~~~~ 386 (511)
T 4djk_A 311 GPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVI--TSIALIILTNTGGGNNMSFLIALALTVV--IYLCAYFMLF 386 (511)
T ss_dssp HHHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHHHHH--HHHHHHHHHSSSSHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 44444433332211 1 1233444544433211 1222223333 4555555443 3457788888
Q ss_pred hhhhhhcC
Q 013753 386 IMWLVIKK 393 (437)
Q Consensus 386 l~~l~~~~ 393 (437)
+.+++.|+
T Consensus 387 ~~~~~~r~ 394 (511)
T 4djk_A 387 IGYIVLVL 394 (511)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.05 E-value=5.7e-08 Score=97.03 Aligned_cols=314 Identities=10% Similarity=0.026 Sum_probs=165.5
Q ss_pred CCCCCCCcccccccccccccCccccCCceeehhhhhhhhccccccchHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHh
Q 013753 1 MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAY-LGWGPGTMVLVISWVTTLNTMWQMI 79 (437)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~-~G~~~g~~~l~~~~~~~~~s~~~l~ 79 (437)
|+++..+.+++.+++|-+.-.+++|+.++++.+..-++..++.+-+.+...+.. .++..+++..++..++......+..
T Consensus 1 m~~~~~~~~~~~e~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~ 80 (501)
T 2jln_A 1 MNSTPIEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQ 80 (501)
T ss_dssp -------CCCBCCCSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccccCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655544443333332223345667888888888888888777777665554 2334455555554444444444444
Q ss_pred hchhccCCcccCCHHHHHHHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCccc-chhhHHHHHH
Q 013753 80 NLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR-QTFWILIFGS 158 (437)
Q Consensus 80 ~~~~~~~~~~~~~y~~~~~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~ 158 (437)
....+. +. ++.++.|..||++ |..+..+...+...+.........++.+...+....+ .+ .....++..+
T Consensus 81 ~~G~~~-Gl---~~~v~~R~~FG~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~~v~~~i~~~ 151 (501)
T 2jln_A 81 SAAIRW-GI---NFTVAARMPFGIR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNLPLWIVIFGA 151 (501)
T ss_dssp HHHHHH-CC---CHHHHTTTTSCTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHhhc-CC---ChhhhhHhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHH
Confidence 444333 22 6899999999985 7778888888888888888888888888887765432 22 2344555666
Q ss_pred HHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHH-HHHhcCCcchH
Q 013753 159 LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQI-SFAFAGHAVAL 237 (437)
Q Consensus 159 i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~ 237 (437)
+.++.... ..+.+++++.+.....++..++..+..+.+.... .+.... ..+......+..++... .+.-....+.+
T Consensus 152 l~~~~~~~-G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~-~~~~~~-~~~~~~~~~f~~ai~~~~~~~~~~~~~~~ 228 (501)
T 2jln_A 152 IQVVTTFY-GITFIRWMNVFASPVLLAMGVYMVYLMLDGADVS-LGEVMS-MGGENPGMPFSTAIMIFVGGWIAVVVSIH 228 (501)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHTT-CCCSSCCSCHHHHHHHHHTTTHHHHTTTH
T ss_pred HHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhhhc-cCCccchHHHHHHHHHHHHHHHHHHhccC
Confidence 66666644 7888888888877755554444443333221110 000000 00011122333333332 12122336677
Q ss_pred hhhhhCCCCCCCCcc---------cc-hhhhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhc-cCCChHHHHHHH-H
Q 013753 238 EIQATIPSTPEKPSK---------IL-MWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMA-LKRPGWLIAAAN-L 305 (437)
Q Consensus 238 ~i~~~~~~~m~~p~~---------~~-~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~-~~~~~~~~~~~~-~ 305 (437)
.+.+. +|++++ ++ ..+...++..+...+..++|.......+......++.. ++.......+.- +
T Consensus 229 DysRy----~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~ 304 (501)
T 2jln_A 229 DIVKE----CKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQV 304 (501)
T ss_dssp HHHTT----BCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHH
T ss_pred ccccc----CCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHH
Confidence 88887 666654 11 12334455555555555666554333444344444444 333222133333 4
Q ss_pred HHHHHHHHhccc-ccccHHHHHHHHh
Q 013753 306 MVVVHVIGSYQV-FAMPVFHLLEGMM 330 (437)
Q Consensus 306 ~~~~~~~~s~pl-~~~~~~~~~~~~~ 330 (437)
.+.++.+.+--. ..++.-..+.+..
T Consensus 305 ~~~la~i~tn~~~n~ys~~~~l~~~~ 330 (501)
T 2jln_A 305 FVLLATWSTNPAANLLSPAYTLCSTF 330 (501)
T ss_dssp HHHHHHHTTHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 445555444432 5666666666654
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.24 E-value=0.00021 Score=71.76 Aligned_cols=156 Identities=12% Similarity=0.058 Sum_probs=84.1
Q ss_pred cccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (437)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~ 101 (437)
-.|+.+++...+.+..+.+++. +++.|-...+.|+......+. .++........+....++. +..|..|+-++-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~---~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT---TCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc---CCccHHHHHHHHc
Confidence 3688999999999999998887 688998877888653221111 1111111222222222222 2349999999999
Q ss_pred CCCccCcchhhHHHHHH-HHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753 102 GPKLGPWIVLPQQLIVQ-VGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (437)
Q Consensus 102 G~~~g~~~~~~~~~~~~-~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (437)
|++ .+.+..+...+.. +..+.+.....+. .+.... +.+....+++..++.......-.++...++..+..
T Consensus 94 g~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~----~~~~~~----Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~ 164 (530)
T 3dh4_A 94 NKK-LKTILAVFWISLYIFVNLTSVLYLGGL----ALETIL----GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 164 (530)
T ss_dssp CHH-HHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHT----TCCHHHHHHHHHHHHHHTTC------CCSHHHHHH
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh----CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 985 4444444332211 1112222222222 233333 34445555666666677777778999999998888
Q ss_pred HHHHHHHHHHH
Q 013753 181 VMSLSYSTIAW 191 (437)
Q Consensus 181 ~~~~~~~~i~~ 191 (437)
+++++..+++.
T Consensus 165 ~im~~g~~~v~ 175 (530)
T 3dh4_A 165 FFLVLGGFMTT 175 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 86665444333
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.10 E-value=0.00055 Score=69.68 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=81.6
Q ss_pred ccCCceeehhhhhhhhccccc-cchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 24 ~~~~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
.|+.+++...+.+..+.+++. .++.|....+.|+......+. ..+........+....++. +..|..|+-++=||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~---~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT---TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC---CCCCcHHHHHHHcc
Confidence 577899988898988888777 578997777788643222111 1111111122222222222 23499999999999
Q ss_pred CCccCcchhhHHHHH-HHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 013753 103 PKLGPWIVLPQQLIV-QVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~-~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (437)
++. +.+..+...+. .+..........+..++.++ +.+....+++..++.......-.++...++..+..+
T Consensus 124 ~~~-~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 124 KKL-KTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 753 34443332221 11112222222333333333 334455555666666777777788888888888887
Q ss_pred HHHHHHHHHH
Q 013753 182 MSLSYSTIAW 191 (437)
Q Consensus 182 ~~~~~~~i~~ 191 (437)
++++..+++.
T Consensus 195 iml~~~l~v~ 204 (593)
T 2xq2_A 195 FLVLGGFMTT 204 (593)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655444333
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.90 E-value=0.39 Score=47.43 Aligned_cols=246 Identities=12% Similarity=0.040 Sum_probs=124.4
Q ss_pred ceeehhhhhhhhccccc-cchHHHHHHhcCh----hHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhC
Q 013753 28 KWWYSTFHCVTAMIGAG-VLSLPYAMAYLGW----GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (437)
Q Consensus 28 ~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~----~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G 102 (437)
+..+-++..+++.+|-| +.-.||...+-|. ++-++++++.++-..+.=..+.|-..+..+. +-.+.-++...
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~---~~i~a~~~l~~ 86 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG---TTPAIFYLLWR 86 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCC---SHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCC---CHHHHHHHhcC
Confidence 44566888899999999 8889999877773 3333444444444444444444421111111 22222222221
Q ss_pred CCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCC---c--c-----------------cc----------h
Q 013753 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK---P--L-----------------RQ----------T 150 (437)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~---~--~-----------------~~----------~ 150 (437)
++..+ .+.....+..+..++-|.+..+-.+..+...+.+..+ . . +. +
T Consensus 87 ~~~~~-giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~ 165 (519)
T 2a65_A 87 NRFAK-ILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPS 165 (519)
T ss_dssp SHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCC
T ss_pred CcCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCcc
Confidence 10011 2223334444455556666666555555544432210 0 0 00 1
Q ss_pred hhHHH---HHHHHHHhhcCCCc-chhhHHHHHHHHHHHHHHHHHHHhhhcccc-----ccCcccccc-CCCchhhHhHHH
Q 013753 151 FWILI---FGSLHFFLSQLPDI-NSVSSVSLAAAVMSLSYSTIAWAGSLSHGR-----IENVSYAYK-HTSSADYMFRVF 220 (437)
Q Consensus 151 ~~~~i---~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~ 220 (437)
+..++ ...++.-++..|.+ +...+.+.+.+....+.+++..+.....+. .++.++-.. +.....+..-..
T Consensus 166 ~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~ 245 (519)
T 2a65_A 166 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWI 245 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHH
Confidence 11222 22334455667788 668888888877666666666666554433 122221111 111122345578
Q ss_pred HHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhHHHHHHHHHHHHh-----HHHHHhhhcC
Q 013753 221 NALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFP-----VALIGYWAFG 282 (437)
Q Consensus 221 ~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~-----~g~~gy~~fg 282 (437)
.+++.++|+++.-.-..-.++. .+|+|.++.|........-+..-++ ++..+|.++|
T Consensus 246 ~A~gQ~FFSLslG~G~~ity~S-----Y~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g 307 (519)
T 2a65_A 246 AAVGQIFFTLSLGFGAIITYAS-----YVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFG 307 (519)
T ss_dssp HHHHHHHHHHTTTSSHHHHHHT-----TSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHhHHhhhhc-----ccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999877666666665 3344445556555444433333332 3334555445
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=83.67 E-value=16 Score=35.96 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=71.6
Q ss_pred ccccCCceeehhhhhhhhccccccchHH----HH-HHh--cC-----hhHHHHHHHHHHHHHHHHHHHHhh---chhccC
Q 013753 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLP----YA-MAY--LG-----WGPGTMVLVISWVTTLNTMWQMIN---LHECVP 86 (437)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP----~a-~~~--~G-----~~~g~~~l~~~~~~~~~s~~~l~~---~~~~~~ 86 (437)
++.++.+| +.++..+-+|+|++.-. .. +.+ .| .-.+.....+=+-+.-++.+.+.- ..-.++
T Consensus 94 PefS~~sW---~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yr 170 (539)
T 4ain_A 94 PEFRTVSW---ISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFR 170 (539)
T ss_dssp CSSCHHHH---HHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCcchHH---HHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhc
Confidence 34444455 89999999999988532 21 111 01 112333333333333333333222 111111
Q ss_pred C---cccC--CHHHHHHH-HhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCC-CcccchhhHHHHHHH
Q 013753 87 G---VRFD--RYIDLGRH-AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC-KPLRQTFWILIFGSL 159 (437)
Q Consensus 87 ~---~~~~--~y~~~~~~-~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~i 159 (437)
+ .+.+ =|+=++++ ..|+ .|+ ++|++..+...+....-+-+...+++.-+....+.. .+......+++...+
T Consensus 171 k~~pl~iss~l~PllG~r~~~G~-~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~ 248 (539)
T 4ain_A 171 VGRKQLLSSAFVPLIGEKGAEGW-LGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTL 248 (539)
T ss_dssp TCCCSCTTGGGHHHHHHHHTTSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHH
T ss_pred CCCCCcHHHHhHhhcCCCccCCc-chh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 1 1111 24555666 5665 675 677776666555555545556666666666665432 122222223333334
Q ss_pred HHHhhcCCCc-chhhHHHHHHHH
Q 013753 160 HFFLSQLPDI-NSVSSVSLAAAV 181 (437)
Q Consensus 160 ~~pl~~~~~l-~~l~~~s~~~~~ 181 (437)
++-.+....+ |.+++.|.+.+.
T Consensus 249 i~~~Sa~sGl~kGIk~LS~~N~~ 271 (539)
T 4ain_A 249 AFIFSAISGVGKGIQYLSNANMV 271 (539)
T ss_dssp HHHHHHHC---CCHHHHGGGHCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444444 455555555544
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=72.07 E-value=24 Score=34.40 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=49.6
Q ss_pred HHHHH-HHHhCCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhHHHHHHHHHHhhcCCCc-c
Q 013753 93 YIDLG-RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI-N 170 (437)
Q Consensus 93 y~~~~-~~~~G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l-~ 170 (437)
|+-++ ++..|+ .|+ ++|+...+...+....-+-....+++.-++...+...+......+++...+++-.+....+ |
T Consensus 181 ~PllG~~r~~G~-~G~-~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~k 258 (509)
T 2wsw_A 181 VPLVGEKHVNGL-FGT-VVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQK 258 (509)
T ss_dssp HHHHHHHHHHSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhcCCcccCCc-hhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55667 677786 686 5666655555444443344455555555555543322111112222233344455555666 6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013753 171 SVSSVSLAAAVMSLSYST 188 (437)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~ 188 (437)
.+++.|.+.+.+.+..++
T Consensus 259 GIk~LS~~N~~la~~Ll~ 276 (509)
T 2wsw_A 259 GVKIASDVRTYLSFLMLG 276 (509)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777887777665444433
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=18.20 E-value=4.7e+02 Score=22.56 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHHHhccccc
Q 013753 296 PGWLIAAANLMVVVHVIGSYQVFA 319 (437)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~s~pl~~ 319 (437)
+++...+.++.....+..-.|+..
T Consensus 147 ~~Yl~fv~~l~l~fGl~FelPvi~ 170 (249)
T 4b4a_A 147 DMYISFVLKLVVAFGIAFEMPIVL 170 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666443
Done!