Query 013755
Match_columns 437
No_of_seqs 543 out of 3682
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 4.4E-59 9.6E-64 436.3 34.3 323 54-437 1-327 (397)
2 KOG0545 Aryl-hydrocarbon recep 100.0 8.8E-28 1.9E-32 209.8 15.2 247 162-434 9-297 (329)
3 KOG0544 FKBP-type peptidyl-pro 100.0 5.8E-28 1.3E-32 177.6 11.7 105 47-153 2-107 (108)
4 KOG0549 FKBP-type peptidyl-pro 100.0 2.2E-27 4.8E-32 198.5 16.4 176 94-305 1-180 (188)
5 COG0545 FkpA FKBP-type peptidy 100.0 5.5E-28 1.2E-32 207.0 12.5 112 37-153 92-204 (205)
6 PRK11570 peptidyl-prolyl cis-t 99.9 1.5E-23 3.3E-28 186.6 13.7 111 38-153 94-205 (206)
7 KOG0544 FKBP-type peptidyl-pro 99.9 1.6E-23 3.4E-28 154.3 11.3 107 164-301 2-108 (108)
8 KOG0552 FKBP-type peptidyl-pro 99.9 7.6E-23 1.6E-27 180.1 12.9 108 42-153 116-225 (226)
9 KOG0549 FKBP-type peptidyl-pro 99.9 1.3E-22 2.9E-27 169.9 13.3 110 44-155 66-177 (188)
10 KOG0543 FKBP-type peptidyl-pro 99.9 4.1E-22 9E-27 187.7 16.3 271 43-432 81-357 (397)
11 TIGR03516 ppisom_GldI peptidyl 99.9 2.6E-22 5.6E-27 174.4 13.7 111 40-154 63-176 (177)
12 PRK10902 FKBP-type peptidyl-pr 99.9 2E-21 4.4E-26 179.2 14.2 112 39-155 139-250 (269)
13 COG0545 FkpA FKBP-type peptidy 99.8 7E-21 1.5E-25 163.4 12.0 106 161-300 99-204 (205)
14 PF00254 FKBP_C: FKBP-type pep 99.8 5.1E-19 1.1E-23 139.2 10.0 92 58-151 1-94 (94)
15 KOG0553 TPR repeat-containing 99.8 5.5E-19 1.2E-23 160.4 11.3 108 313-435 76-183 (304)
16 PRK15095 FKBP-type peptidyl-pr 99.8 4.3E-19 9.3E-24 151.3 8.3 131 61-201 4-137 (156)
17 COG1047 SlpA FKBP-type peptidy 99.8 7.7E-19 1.7E-23 148.4 8.7 131 61-201 2-134 (174)
18 KOG4234 TPR repeat-containing 99.8 9.5E-18 2.1E-22 143.1 11.7 114 313-436 90-203 (271)
19 PRK10737 FKBP-type peptidyl-pr 99.7 4.6E-18 1E-22 148.6 7.8 130 61-201 2-133 (196)
20 PRK11570 peptidyl-prolyl cis-t 99.7 1.6E-16 3.4E-21 141.6 13.3 106 161-300 100-205 (206)
21 TIGR03516 ppisom_GldI peptidyl 99.7 1.1E-15 2.3E-20 133.0 13.2 109 161-301 67-176 (177)
22 KOG0552 FKBP-type peptidyl-pro 99.6 2E-15 4.4E-20 133.3 11.8 105 162-300 119-225 (226)
23 PF00254 FKBP_C: FKBP-type pep 99.6 4.6E-15 1E-19 116.6 12.1 93 176-298 2-94 (94)
24 PRK10902 FKBP-type peptidyl-pr 99.6 1.3E-14 2.8E-19 134.2 13.7 108 161-303 144-251 (269)
25 KOG0548 Molecular co-chaperone 99.6 3.5E-15 7.6E-20 144.7 10.3 106 316-436 356-461 (539)
26 KOG0547 Translocase of outer m 99.6 7.6E-15 1.6E-19 140.6 10.7 102 309-425 106-207 (606)
27 KOG4648 Uncharacterized conser 99.6 5.2E-15 1.1E-19 136.0 8.6 111 311-436 90-200 (536)
28 PRK15359 type III secretion sy 99.5 1E-13 2.3E-18 117.8 12.4 102 320-436 26-127 (144)
29 PLN03088 SGT1, suppressor of 99.5 1.2E-13 2.5E-18 135.2 12.1 103 319-436 3-105 (356)
30 TIGR00990 3a0801s09 mitochondr 99.5 2.2E-13 4.8E-18 143.6 15.1 133 285-434 95-227 (615)
31 PRK15363 pathogenicity island 99.5 1.1E-12 2.5E-17 110.0 12.7 105 315-434 32-136 (157)
32 KOG0550 Molecular chaperone (D 99.4 2.7E-13 5.7E-18 127.8 9.2 110 313-433 244-353 (486)
33 KOG0551 Hsp90 co-chaperone CNS 99.4 7.3E-13 1.6E-17 121.7 10.4 108 315-433 78-185 (390)
34 KOG0548 Molecular co-chaperone 99.4 4.9E-13 1.1E-17 130.0 9.8 103 318-435 2-104 (539)
35 TIGR02552 LcrH_SycD type III s 99.4 6E-12 1.3E-16 105.7 12.8 105 317-436 16-120 (135)
36 PRK11189 lipoprotein NlpI; Pro 99.3 1E-11 2.2E-16 118.7 13.4 105 316-435 62-166 (296)
37 PF13414 TPR_11: TPR repeat; P 99.3 4.6E-12 9.9E-17 93.3 7.9 66 367-432 3-69 (69)
38 KOG4642 Chaperone-dependent E3 99.3 1.2E-11 2.5E-16 109.0 8.2 101 316-431 8-108 (284)
39 PRK10370 formate-dependent nit 99.3 7.1E-11 1.5E-15 105.8 13.2 106 316-436 71-179 (198)
40 PRK15095 FKBP-type peptidyl-pr 99.3 2.6E-11 5.6E-16 103.6 9.0 63 214-277 13-75 (156)
41 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.6E-10 3.6E-15 94.2 13.3 107 318-436 2-111 (119)
42 KOG4626 O-linked N-acetylgluco 99.2 1.2E-11 2.6E-16 121.8 6.8 104 317-435 251-354 (966)
43 PRK02603 photosystem I assembl 99.2 2.3E-10 5E-15 100.4 13.3 110 313-434 30-153 (172)
44 KOG4626 O-linked N-acetylgluco 99.2 4.8E-11 1E-15 117.6 8.6 101 318-433 354-454 (966)
45 PF13432 TPR_16: Tetratricopep 99.2 9E-11 2E-15 85.2 6.8 65 371-435 1-65 (65)
46 KOG0376 Serine-threonine phosp 99.2 2.9E-11 6.2E-16 116.9 5.0 105 317-436 3-107 (476)
47 PF12895 Apc3: Anaphase-promot 99.1 1.3E-10 2.9E-15 89.0 7.6 83 331-427 2-84 (84)
48 CHL00033 ycf3 photosystem I as 99.1 9.3E-10 2E-14 96.2 13.8 110 313-434 30-153 (168)
49 cd00189 TPR Tetratricopeptide 99.1 5.1E-10 1.1E-14 86.0 10.8 99 320-433 2-100 (100)
50 TIGR00990 3a0801s09 mitochondr 99.1 7E-10 1.5E-14 117.1 13.5 119 317-435 330-467 (615)
51 KOG1125 TPR repeat-containing 99.1 1.9E-10 4.1E-15 113.1 7.7 102 319-435 431-532 (579)
52 KOG0624 dsRNA-activated protei 99.1 4.7E-10 1E-14 103.8 8.8 105 316-435 36-140 (504)
53 PF13414 TPR_11: TPR repeat; P 99.1 4.7E-10 1E-14 82.4 6.9 67 317-398 2-69 (69)
54 PRK09782 bacteriophage N4 rece 99.0 1.9E-09 4.1E-14 117.4 13.3 104 318-436 609-712 (987)
55 TIGR03302 OM_YfiO outer membra 99.0 2.6E-09 5.5E-14 98.7 11.7 108 316-435 31-149 (235)
56 KOG1173 Anaphase-promoting com 99.0 1.5E-09 3.2E-14 106.6 10.1 108 320-435 416-523 (611)
57 PRK15331 chaperone protein Sic 99.0 3.4E-09 7.4E-14 89.5 10.8 99 316-429 35-133 (165)
58 KOG0547 Translocase of outer m 99.0 1.7E-09 3.7E-14 104.3 9.9 106 315-435 323-428 (606)
59 PRK12370 invasion protein regu 99.0 3.7E-09 8E-14 109.9 12.5 92 330-436 316-407 (553)
60 COG3063 PilF Tfp pilus assembl 99.0 5.7E-09 1.2E-13 92.0 11.6 108 313-435 30-173 (250)
61 PRK15359 type III secretion sy 99.0 2.3E-09 4.9E-14 91.1 8.9 81 338-436 13-93 (144)
62 KOG4555 TPR repeat-containing 99.0 1.6E-08 3.5E-13 81.1 12.5 106 312-432 37-146 (175)
63 COG1047 SlpA FKBP-type peptidy 99.0 5.5E-09 1.2E-13 88.8 10.4 63 214-277 11-73 (174)
64 PRK10803 tol-pal system protei 98.9 1.2E-08 2.5E-13 95.2 12.8 105 319-435 143-251 (263)
65 PF13512 TPR_18: Tetratricopep 98.9 2.7E-08 5.8E-13 82.4 13.2 106 318-435 10-133 (142)
66 KOG0624 dsRNA-activated protei 98.9 3E-09 6.5E-14 98.5 8.3 115 311-436 262-376 (504)
67 KOG1126 DNA-binding cell divis 98.9 1.4E-09 3.1E-14 108.6 6.6 120 316-435 419-557 (638)
68 KOG1126 DNA-binding cell divis 98.9 1E-09 2.3E-14 109.6 5.6 68 368-435 422-523 (638)
69 PRK10737 FKBP-type peptidyl-pr 98.9 5.8E-09 1.3E-13 91.6 9.5 62 214-277 11-72 (196)
70 PRK15179 Vi polysaccharide bio 98.9 6.9E-09 1.5E-13 109.0 11.5 107 315-436 83-189 (694)
71 TIGR02521 type_IV_pilW type IV 98.9 2.8E-08 6E-13 90.3 13.4 117 318-434 31-168 (234)
72 COG3063 PilF Tfp pilus assembl 98.9 1.7E-08 3.7E-13 89.1 11.2 100 320-432 105-204 (250)
73 TIGR02521 type_IV_pilW type IV 98.9 2.4E-08 5.3E-13 90.6 12.8 103 320-435 101-203 (234)
74 PRK10370 formate-dependent nit 98.9 1.3E-08 2.8E-13 91.3 10.5 92 330-436 51-145 (198)
75 KOG0545 Aryl-hydrocarbon recep 98.9 2.1E-09 4.6E-14 95.2 5.0 253 44-411 8-308 (329)
76 PF13371 TPR_9: Tetratricopept 98.9 5.7E-09 1.2E-13 77.5 6.5 64 373-436 1-64 (73)
77 PRK12370 invasion protein regu 98.9 2E-08 4.3E-13 104.5 12.8 103 318-435 338-441 (553)
78 PRK09782 bacteriophage N4 rece 98.8 2.3E-08 5.1E-13 109.0 12.3 91 330-436 588-678 (987)
79 COG0544 Tig FKBP-type peptidyl 98.8 9.8E-09 2.1E-13 101.9 8.4 90 62-160 158-247 (441)
80 PF13432 TPR_16: Tetratricopep 98.8 1E-08 2.3E-13 74.2 6.2 64 323-401 2-65 (65)
81 KOG1155 Anaphase-promoting com 98.8 2E-08 4.4E-13 96.5 9.3 97 324-435 336-432 (559)
82 PRK11189 lipoprotein NlpI; Pro 98.8 2.9E-08 6.2E-13 95.0 10.5 93 332-435 40-132 (296)
83 COG5010 TadD Flp pilus assembl 98.8 7.2E-08 1.6E-12 86.8 11.9 102 318-434 100-201 (257)
84 PRK15174 Vi polysaccharide exp 98.8 5.7E-08 1.2E-12 102.9 12.9 98 322-434 250-351 (656)
85 KOG1308 Hsp70-interacting prot 98.8 4E-09 8.7E-14 97.9 3.6 109 310-433 106-214 (377)
86 KOG1155 Anaphase-promoting com 98.8 4.3E-08 9.3E-13 94.3 10.6 99 318-431 364-462 (559)
87 PRK15174 Vi polysaccharide exp 98.8 6.1E-08 1.3E-12 102.7 13.1 103 318-435 284-386 (656)
88 TIGR03302 OM_YfiO outer membra 98.8 1.5E-07 3.3E-12 86.8 13.5 105 319-435 71-200 (235)
89 PRK11447 cellulose synthase su 98.8 8.9E-08 1.9E-12 108.1 14.2 117 318-436 303-420 (1157)
90 PF13424 TPR_12: Tetratricopep 98.7 2.6E-08 5.7E-13 75.0 6.5 67 365-431 3-76 (78)
91 PLN02789 farnesyltranstransfer 98.7 1.2E-07 2.5E-12 91.2 12.5 105 317-436 70-177 (320)
92 COG1729 Uncharacterized protei 98.7 1.4E-07 3.1E-12 86.0 12.1 105 319-435 142-249 (262)
93 PRK15179 Vi polysaccharide bio 98.7 9.7E-08 2.1E-12 100.5 12.4 103 315-432 117-219 (694)
94 TIGR02552 LcrH_SycD type III s 98.7 4.9E-08 1.1E-12 81.7 8.4 83 339-436 4-86 (135)
95 PRK01490 tig trigger factor; P 98.7 5.8E-08 1.3E-12 98.0 9.5 91 60-159 156-246 (435)
96 TIGR00115 tig trigger factor. 98.7 5.7E-08 1.2E-12 97.2 9.3 100 60-168 145-244 (408)
97 PF13429 TPR_15: Tetratricopep 98.7 5.7E-08 1.2E-12 92.2 8.7 114 317-430 145-277 (280)
98 PF13525 YfiO: Outer membrane 98.7 3.4E-07 7.4E-12 82.5 13.2 107 317-435 4-124 (203)
99 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.2E-08 1.3E-12 94.5 8.8 64 367-430 75-141 (453)
100 KOG0546 HSP90 co-chaperone CPR 98.7 1E-08 2.2E-13 95.7 3.1 126 311-436 215-344 (372)
101 PRK10049 pgaA outer membrane p 98.7 1.3E-07 2.9E-12 102.1 12.1 103 318-436 49-151 (765)
102 KOG4162 Predicted calmodulin-b 98.7 1.7E-07 3.7E-12 95.3 11.8 103 318-435 684-788 (799)
103 PRK11447 cellulose synthase su 98.7 2.3E-07 5E-12 104.8 14.1 119 318-436 385-530 (1157)
104 KOG2076 RNA polymerase III tra 98.7 2.8E-07 6E-12 95.3 13.3 104 316-434 137-240 (895)
105 PRK10049 pgaA outer membrane p 98.7 2.4E-07 5.3E-12 100.1 13.6 104 318-436 359-462 (765)
106 PF12688 TPR_5: Tetratrico pep 98.7 5.7E-07 1.2E-11 73.2 12.3 99 319-429 2-103 (120)
107 PF14559 TPR_19: Tetratricopep 98.6 3.5E-08 7.5E-13 72.1 4.7 59 377-435 1-59 (68)
108 PF09976 TPR_21: Tetratricopep 98.6 3.1E-07 6.8E-12 78.1 11.2 98 318-428 48-145 (145)
109 PF14559 TPR_19: Tetratricopep 98.6 6.9E-08 1.5E-12 70.5 6.1 68 328-410 1-68 (68)
110 COG4785 NlpI Lipoprotein NlpI, 98.6 7.5E-08 1.6E-12 84.1 7.2 132 286-435 36-167 (297)
111 PRK10866 outer membrane biogen 98.6 5.9E-07 1.3E-11 83.1 13.6 106 318-435 32-158 (243)
112 PRK11788 tetratricopeptide rep 98.6 3.9E-07 8.5E-12 90.5 13.4 104 321-434 144-247 (389)
113 TIGR02917 PEP_TPR_lipo putativ 98.6 4.5E-07 9.7E-12 99.2 13.5 104 316-434 123-226 (899)
114 PF13371 TPR_9: Tetratricopept 98.6 3E-07 6.5E-12 68.1 8.3 70 325-409 2-71 (73)
115 PRK11788 tetratricopeptide rep 98.6 6.6E-07 1.4E-11 88.9 13.3 113 321-434 183-315 (389)
116 KOG0550 Molecular chaperone (D 98.6 1.2E-07 2.6E-12 90.2 7.3 115 316-433 201-319 (486)
117 KOG2003 TPR repeat-containing 98.6 9.8E-08 2.1E-12 91.5 6.5 103 319-436 491-593 (840)
118 PRK15363 pathogenicity island 98.5 4.4E-07 9.4E-12 76.5 8.9 70 367-436 35-104 (157)
119 TIGR02917 PEP_TPR_lipo putativ 98.5 5.7E-07 1.2E-11 98.4 12.6 100 320-435 772-871 (899)
120 KOG2076 RNA polymerase III tra 98.5 4.4E-07 9.6E-12 93.8 10.4 104 315-432 411-514 (895)
121 KOG0553 TPR repeat-containing 98.5 2.5E-07 5.4E-12 85.0 7.7 65 370-434 84-148 (304)
122 COG4235 Cytochrome c biogenesi 98.5 1.2E-06 2.7E-11 80.9 12.0 106 316-436 154-262 (287)
123 PF13424 TPR_12: Tetratricopep 98.5 6.3E-07 1.4E-11 67.3 8.6 74 316-397 3-76 (78)
124 PLN02789 farnesyltranstransfer 98.5 7.1E-07 1.5E-11 85.7 10.4 93 328-435 47-142 (320)
125 CHL00033 ycf3 photosystem I as 98.5 4.7E-07 1E-11 79.0 7.6 99 324-435 5-106 (168)
126 PRK10153 DNA-binding transcrip 98.4 5.2E-06 1.1E-10 84.9 15.5 117 318-435 339-487 (517)
127 PLN03088 SGT1, suppressor of 98.4 1.4E-06 2.9E-11 85.5 10.7 84 318-416 36-119 (356)
128 cd00189 TPR Tetratricopeptide 98.4 1.1E-06 2.4E-11 67.0 8.0 67 369-435 2-68 (100)
129 PF06552 TOM20_plant: Plant sp 98.4 1.7E-06 3.6E-11 74.1 9.4 87 334-435 7-114 (186)
130 COG5010 TadD Flp pilus assembl 98.4 1.8E-06 3.8E-11 78.0 9.5 100 322-436 70-169 (257)
131 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.1E-06 4.5E-11 69.7 9.3 68 368-435 3-73 (119)
132 PRK14574 hmsH outer membrane p 98.4 2.1E-06 4.6E-11 92.1 11.8 119 317-435 33-170 (822)
133 KOG2002 TPR-containing nuclear 98.4 1.3E-06 2.8E-11 91.1 9.5 107 318-436 270-377 (1018)
134 KOG1310 WD40 repeat protein [G 98.4 8.5E-07 1.8E-11 86.7 7.6 109 312-435 368-479 (758)
135 cd05804 StaR_like StaR_like; a 98.4 5.7E-06 1.2E-10 81.1 13.7 118 318-435 43-182 (355)
136 KOG1840 Kinesin light chain [C 98.4 4.4E-06 9.6E-11 84.3 12.8 110 315-431 280-397 (508)
137 KOG1129 TPR repeat-containing 98.3 4.9E-06 1.1E-10 77.2 11.0 100 322-437 227-326 (478)
138 cd05804 StaR_like StaR_like; a 98.3 6.1E-06 1.3E-10 80.9 12.4 100 318-432 114-217 (355)
139 COG4783 Putative Zn-dependent 98.3 7.1E-06 1.5E-10 80.1 11.9 104 317-435 305-408 (484)
140 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.9E-06 1.1E-10 81.4 10.3 73 313-397 70-142 (453)
141 PF03704 BTAD: Bacterial trans 98.3 4.5E-05 9.9E-10 64.7 15.2 113 317-429 5-124 (146)
142 KOG1840 Kinesin light chain [C 98.3 6.5E-06 1.4E-10 83.1 11.5 109 316-431 197-313 (508)
143 PF00515 TPR_1: Tetratricopept 98.3 1.5E-06 3.2E-11 53.9 4.4 33 402-434 2-34 (34)
144 KOG1128 Uncharacterized conser 98.3 3.7E-06 8E-11 85.4 9.5 100 320-434 487-586 (777)
145 PRK02603 photosystem I assembl 98.3 4.8E-06 1E-10 72.9 9.0 70 366-435 34-106 (172)
146 KOG1129 TPR repeat-containing 98.2 5.2E-06 1.1E-10 77.0 8.2 106 317-434 357-462 (478)
147 KOG1173 Anaphase-promoting com 98.2 5.2E-06 1.1E-10 82.1 8.7 98 324-436 386-490 (611)
148 PF13429 TPR_15: Tetratricopep 98.2 5.7E-06 1.2E-10 78.5 8.9 102 322-435 144-248 (280)
149 PF13431 TPR_17: Tetratricopep 98.2 1.5E-06 3.2E-11 53.8 3.1 34 389-422 1-34 (34)
150 COG2956 Predicted N-acetylgluc 98.2 1.3E-05 2.8E-10 74.4 10.4 116 318-433 107-246 (389)
151 COG4783 Putative Zn-dependent 98.2 1.6E-05 3.4E-10 77.7 11.4 96 321-431 343-438 (484)
152 KOG2002 TPR-containing nuclear 98.2 1.2E-05 2.7E-10 84.0 11.0 109 314-436 303-415 (1018)
153 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.3E-05 2.9E-10 78.7 10.8 95 321-430 203-297 (395)
154 PF07719 TPR_2: Tetratricopept 98.2 5E-06 1.1E-10 51.4 5.1 34 401-434 1-34 (34)
155 PRK14574 hmsH outer membrane p 98.1 1.8E-05 3.9E-10 85.1 11.6 102 319-436 103-204 (822)
156 PF15015 NYD-SP12_N: Spermatog 98.1 4E-05 8.6E-10 73.4 12.3 115 314-428 172-289 (569)
157 PF14938 SNAP: Soluble NSF att 98.1 2.6E-05 5.6E-10 74.1 11.3 111 315-434 111-229 (282)
158 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.3E-09 62.4 13.8 102 313-426 6-110 (145)
159 PF00515 TPR_1: Tetratricopept 98.1 4.5E-06 9.9E-11 51.7 3.9 33 368-400 2-34 (34)
160 KOG1125 TPR repeat-containing 98.1 2.7E-05 5.8E-10 77.4 10.3 97 322-433 289-385 (579)
161 COG2956 Predicted N-acetylgluc 98.0 5.9E-05 1.3E-09 70.1 11.8 106 314-434 176-282 (389)
162 PF14938 SNAP: Soluble NSF att 98.0 3.9E-05 8.6E-10 72.8 11.2 107 316-432 73-186 (282)
163 KOG1130 Predicted G-alpha GTPa 98.0 9.4E-06 2E-10 77.4 6.3 110 313-431 190-305 (639)
164 KOG3060 Uncharacterized conser 98.0 6.2E-05 1.3E-09 67.7 11.1 116 319-434 87-224 (289)
165 PRK14720 transcript cleavage f 98.0 2.7E-05 5.8E-10 83.3 10.3 112 318-431 31-179 (906)
166 PRK11906 transcriptional regul 98.0 4.7E-05 1E-09 74.8 11.0 88 333-435 273-372 (458)
167 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 52.8 5.1 43 368-410 2-44 (44)
168 KOG3060 Uncharacterized conser 98.0 7.2E-05 1.6E-09 67.3 10.9 56 380-435 133-188 (289)
169 TIGR00540 hemY_coli hemY prote 98.0 4.8E-05 1E-09 76.3 11.1 115 315-430 260-399 (409)
170 PRK11906 transcriptional regul 98.0 3.8E-05 8.2E-10 75.4 9.9 88 332-434 318-405 (458)
171 PRK14720 transcript cleavage f 98.0 4.1E-05 8.9E-10 81.9 10.9 57 364-435 147-203 (906)
172 TIGR00540 hemY_coli hemY prote 97.9 0.00021 4.6E-09 71.7 13.8 120 313-432 79-218 (409)
173 PF07719 TPR_2: Tetratricopept 97.9 2.8E-05 6E-10 47.9 4.5 33 368-400 2-34 (34)
174 PF12968 DUF3856: Domain of Un 97.9 0.00084 1.8E-08 53.3 13.6 108 320-430 11-129 (144)
175 PRK10747 putative protoheme IX 97.9 0.00013 2.9E-09 72.8 11.8 60 373-432 159-218 (398)
176 KOG4555 TPR repeat-containing 97.9 5.1E-05 1.1E-09 61.3 6.9 61 372-432 48-108 (175)
177 PF12688 TPR_5: Tetratrico pep 97.9 9.5E-05 2.1E-09 60.2 8.8 67 368-434 2-71 (120)
178 COG4105 ComL DNA uptake lipopr 97.9 0.00035 7.6E-09 63.5 13.2 107 317-435 33-150 (254)
179 PRK10803 tol-pal system protei 97.9 8E-05 1.7E-09 69.5 9.4 69 368-436 143-215 (263)
180 PRK10747 putative protoheme IX 97.8 0.00013 2.8E-09 72.9 11.0 114 316-431 261-391 (398)
181 KOG4648 Uncharacterized conser 97.8 2.2E-05 4.8E-10 73.3 4.6 62 371-432 101-162 (536)
182 KOG1128 Uncharacterized conser 97.8 0.0001 2.2E-09 75.3 9.2 122 315-437 421-555 (777)
183 PRK10866 outer membrane biogen 97.8 0.00014 3.1E-09 67.2 9.5 70 367-436 32-104 (243)
184 PF13181 TPR_8: Tetratricopept 97.8 4.8E-05 1E-09 46.9 4.3 33 402-434 2-34 (34)
185 KOG1174 Anaphase-promoting com 97.7 0.0002 4.3E-09 68.7 10.0 117 318-434 232-367 (564)
186 PF13525 YfiO: Outer membrane 97.7 0.00038 8.2E-09 62.7 11.5 106 318-435 42-175 (203)
187 PF13512 TPR_18: Tetratricopep 97.7 0.0003 6.5E-09 58.5 9.7 70 368-437 11-83 (142)
188 PF12895 Apc3: Anaphase-promot 97.7 8.2E-05 1.8E-09 56.6 5.8 61 317-393 24-84 (84)
189 KOG1130 Predicted G-alpha GTPa 97.7 0.00024 5.2E-09 68.1 9.9 110 313-431 230-345 (639)
190 COG4235 Cytochrome c biogenesi 97.7 0.0003 6.6E-09 65.3 10.5 89 333-436 137-228 (287)
191 PRK15331 chaperone protein Sic 97.7 0.00027 5.8E-09 60.1 8.9 70 367-436 37-106 (165)
192 COG4700 Uncharacterized protei 97.7 0.00055 1.2E-08 58.9 10.8 101 319-433 90-192 (251)
193 PF12569 NARP1: NMDA receptor- 97.7 0.00029 6.3E-09 71.9 10.7 70 366-435 193-262 (517)
194 TIGR00115 tig trigger factor. 97.7 0.00072 1.6E-08 67.8 13.4 72 222-304 162-233 (408)
195 KOG1156 N-terminal acetyltrans 97.7 0.0002 4.4E-09 72.2 9.1 101 319-434 8-108 (700)
196 KOG4162 Predicted calmodulin-b 97.6 0.00025 5.3E-09 72.9 9.5 103 320-437 652-756 (799)
197 PF13428 TPR_14: Tetratricopep 97.6 6.7E-05 1.5E-09 49.4 3.4 36 401-436 1-36 (44)
198 KOG4234 TPR repeat-containing 97.6 0.00036 7.7E-09 60.7 8.6 74 316-404 132-205 (271)
199 PF04733 Coatomer_E: Coatomer 97.6 0.00016 3.5E-09 68.6 7.1 68 368-435 202-270 (290)
200 KOG2003 TPR repeat-containing 97.6 0.00053 1.1E-08 66.4 9.9 120 316-435 556-694 (840)
201 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00022 4.7E-09 62.8 6.6 72 364-435 62-133 (297)
202 KOG4151 Myosin assembly protei 97.5 0.00019 4E-09 74.2 7.2 116 310-436 45-162 (748)
203 PRK10941 hypothetical protein; 97.5 0.00044 9.6E-09 64.5 9.0 74 364-437 178-251 (269)
204 KOG4642 Chaperone-dependent E3 97.5 8.3E-05 1.8E-09 66.3 3.8 63 372-434 15-77 (284)
205 PF04733 Coatomer_E: Coatomer 97.5 0.00031 6.7E-09 66.7 8.0 96 324-436 137-236 (290)
206 KOG2796 Uncharacterized conser 97.5 0.00072 1.6E-08 61.3 9.2 115 320-434 179-319 (366)
207 PF13181 TPR_8: Tetratricopept 97.5 0.00017 3.8E-09 44.3 3.8 33 368-400 2-34 (34)
208 KOG4340 Uncharacterized conser 97.5 0.00037 8.1E-09 64.2 7.1 93 317-424 143-264 (459)
209 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00073 1.6E-08 46.2 6.5 43 368-410 2-44 (53)
210 KOG1941 Acetylcholine receptor 97.4 0.0012 2.5E-08 62.6 9.8 120 317-436 5-157 (518)
211 COG1729 Uncharacterized protei 97.4 0.00076 1.6E-08 61.9 8.5 67 370-436 144-213 (262)
212 KOG4814 Uncharacterized conser 97.4 0.0018 3.9E-08 65.4 11.6 103 319-430 355-457 (872)
213 PRK01490 tig trigger factor; P 97.4 0.0014 3.1E-08 66.2 11.3 72 222-304 173-244 (435)
214 KOG1156 N-terminal acetyltrans 97.4 0.00073 1.6E-08 68.3 8.7 93 322-429 79-171 (700)
215 KOG0495 HAT repeat protein [RN 97.4 0.0013 2.8E-08 66.7 10.3 115 321-435 587-719 (913)
216 KOG4507 Uncharacterized conser 97.3 0.00033 7.1E-09 69.9 5.8 95 328-436 617-711 (886)
217 KOG1127 TPR repeat-containing 97.3 0.00065 1.4E-08 71.7 7.8 95 321-430 565-659 (1238)
218 KOG0495 HAT repeat protein [RN 97.3 0.0016 3.4E-08 66.0 9.9 98 324-436 657-754 (913)
219 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0026 5.6E-08 62.7 11.3 87 331-435 182-268 (395)
220 PF13174 TPR_6: Tetratricopept 97.3 0.00067 1.4E-08 41.2 4.6 32 403-434 2-33 (33)
221 KOG1127 TPR repeat-containing 97.2 0.0023 5E-08 67.7 10.9 100 320-434 4-107 (1238)
222 KOG3785 Uncharacterized conser 97.2 0.00096 2.1E-08 62.9 7.2 88 326-427 30-117 (557)
223 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.00036 7.8E-09 47.7 3.2 35 402-436 2-36 (53)
224 COG4105 ComL DNA uptake lipopr 97.2 0.0023 5E-08 58.3 9.2 71 367-437 34-107 (254)
225 COG2976 Uncharacterized protei 97.2 0.0045 9.7E-08 53.9 10.4 103 319-434 90-192 (207)
226 KOG1174 Anaphase-promoting com 97.2 0.0026 5.5E-08 61.3 9.6 101 319-434 335-437 (564)
227 KOG1941 Acetylcholine receptor 97.1 0.0019 4.1E-08 61.2 8.1 102 321-431 125-236 (518)
228 PF13431 TPR_17: Tetratricopep 97.1 0.00033 7.1E-09 43.3 2.1 34 340-388 1-34 (34)
229 PF13176 TPR_7: Tetratricopept 97.1 0.00034 7.3E-09 43.8 2.2 25 370-394 2-26 (36)
230 KOG0551 Hsp90 co-chaperone CNS 97.1 0.002 4.3E-08 60.4 8.0 69 367-435 81-153 (390)
231 KOG1586 Protein required for f 97.1 0.0081 1.8E-07 53.7 11.0 102 324-434 79-187 (288)
232 KOG3785 Uncharacterized conser 97.1 0.0038 8.3E-08 59.0 9.4 63 372-434 156-218 (557)
233 KOG1586 Protein required for f 97.0 0.0098 2.1E-07 53.2 11.3 105 322-435 117-229 (288)
234 smart00028 TPR Tetratricopepti 97.0 0.0012 2.5E-08 39.1 4.0 32 402-433 2-33 (34)
235 PF13176 TPR_7: Tetratricopept 97.0 0.001 2.3E-08 41.6 3.7 30 403-432 1-30 (36)
236 KOG2376 Signal recognition par 97.0 0.0081 1.8E-07 60.4 11.2 113 319-434 13-143 (652)
237 KOG3824 Huntingtin interacting 96.9 0.0019 4.1E-08 59.9 6.3 68 370-437 119-186 (472)
238 PF13174 TPR_6: Tetratricopept 96.9 0.0014 3.1E-08 39.7 3.7 32 369-400 2-33 (33)
239 COG0544 Tig FKBP-type peptidyl 96.9 0.0059 1.3E-07 61.1 9.7 62 233-304 181-244 (441)
240 KOG3824 Huntingtin interacting 96.8 0.0032 7E-08 58.4 6.9 84 313-411 111-194 (472)
241 PRK10153 DNA-binding transcrip 96.8 0.0048 1E-07 63.4 9.0 68 320-403 422-489 (517)
242 PF10300 DUF3808: Protein of u 96.8 0.0076 1.7E-07 61.4 10.0 101 319-431 268-377 (468)
243 COG0457 NrfG FOG: TPR repeat [ 96.8 0.024 5.3E-07 49.8 12.4 94 327-432 139-233 (291)
244 KOG2376 Signal recognition par 96.8 0.012 2.6E-07 59.2 10.8 116 320-435 112-258 (652)
245 COG3118 Thioredoxin domain-con 96.7 0.037 8E-07 51.5 12.8 100 319-433 135-268 (304)
246 KOG3081 Vesicle coat complex C 96.7 0.014 3.1E-07 53.2 9.8 56 381-436 187-242 (299)
247 smart00028 TPR Tetratricopepti 96.7 0.0027 5.9E-08 37.4 3.6 33 368-400 2-34 (34)
248 PF12569 NARP1: NMDA receptor- 96.6 0.016 3.4E-07 59.4 11.0 98 318-430 194-291 (517)
249 PF06552 TOM20_plant: Plant sp 96.6 0.0034 7.3E-08 54.1 5.1 54 382-435 6-69 (186)
250 KOG0376 Serine-threonine phosp 96.6 0.0016 3.5E-08 64.0 3.5 66 370-435 7-72 (476)
251 COG0457 NrfG FOG: TPR repeat [ 96.6 0.026 5.6E-07 49.7 11.1 103 316-433 93-199 (291)
252 KOG3364 Membrane protein invol 96.6 0.0076 1.7E-07 49.2 6.5 70 367-436 32-106 (149)
253 PF09986 DUF2225: Uncharacteri 96.5 0.037 8.1E-07 50.0 11.6 98 326-431 85-195 (214)
254 COG3071 HemY Uncharacterized e 96.5 0.042 9.1E-07 52.9 12.0 114 316-430 261-390 (400)
255 PF04781 DUF627: Protein of un 96.5 0.035 7.6E-07 43.9 9.5 103 324-431 2-108 (111)
256 PRK04841 transcriptional regul 96.5 0.033 7.2E-07 61.8 13.2 64 368-431 532-603 (903)
257 COG4976 Predicted methyltransf 96.5 0.0043 9.4E-08 55.2 4.8 61 375-435 3-63 (287)
258 PRK04841 transcriptional regul 96.2 0.053 1.1E-06 60.2 13.2 100 321-430 455-560 (903)
259 KOG4340 Uncharacterized conser 96.1 0.023 5E-07 52.7 7.9 86 328-428 20-105 (459)
260 KOG1308 Hsp70-interacting prot 96.1 0.0018 3.9E-08 61.0 0.6 59 377-435 124-182 (377)
261 PF10602 RPN7: 26S proteasome 96.1 0.091 2E-06 46.0 11.3 102 315-428 33-140 (177)
262 COG3071 HemY Uncharacterized e 96.1 0.092 2E-06 50.7 11.8 117 311-427 77-213 (400)
263 PF10952 DUF2753: Protein of u 96.1 0.052 1.1E-06 43.5 8.5 81 320-400 3-87 (140)
264 PLN03081 pentatricopeptide (PP 95.9 0.038 8.3E-07 59.5 9.8 110 321-430 429-557 (697)
265 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.076 1.6E-06 39.2 8.2 69 316-396 4-72 (80)
266 KOG3081 Vesicle coat complex C 95.9 0.12 2.7E-06 47.3 11.1 88 332-434 187-275 (299)
267 KOG1585 Protein required for f 95.9 0.21 4.6E-06 45.3 12.4 105 318-431 31-140 (308)
268 PF08631 SPO22: Meiosis protei 95.8 0.19 4.2E-06 47.5 12.9 121 308-430 25-150 (278)
269 PF14561 TPR_20: Tetratricopep 95.8 0.038 8.2E-07 42.5 6.6 50 386-435 7-56 (90)
270 COG2912 Uncharacterized conser 95.8 0.031 6.8E-07 51.5 7.0 72 365-436 179-250 (269)
271 COG3629 DnrI DNA-binding trans 95.7 0.18 3.9E-06 47.2 11.8 72 359-430 145-216 (280)
272 PF13374 TPR_10: Tetratricopep 95.6 0.022 4.8E-07 36.3 4.0 29 368-396 3-31 (42)
273 COG4700 Uncharacterized protei 95.5 0.3 6.5E-06 42.5 11.5 95 319-427 125-219 (251)
274 KOG2471 TPR repeat-containing 95.5 0.019 4.2E-07 56.5 4.9 98 317-414 282-382 (696)
275 KOG2053 Mitochondrial inherita 95.5 0.071 1.5E-06 56.3 9.2 92 327-433 18-109 (932)
276 PRK10941 hypothetical protein; 95.5 0.17 3.7E-06 47.3 10.9 79 318-411 181-259 (269)
277 PF02259 FAT: FAT domain; Int 95.5 0.24 5.1E-06 48.2 12.6 116 318-433 184-341 (352)
278 PF04184 ST7: ST7 protein; In 95.4 0.15 3.2E-06 50.9 10.8 119 310-428 183-322 (539)
279 KOG2471 TPR repeat-containing 95.4 0.041 9E-07 54.3 6.8 111 319-435 241-369 (696)
280 PF05843 Suf: Suppressor of fo 95.4 0.099 2.2E-06 49.5 9.4 95 324-433 7-102 (280)
281 PF03704 BTAD: Bacterial trans 95.2 0.12 2.6E-06 43.5 8.6 65 316-395 60-124 (146)
282 PLN03218 maturation of RBCL 1; 95.1 0.31 6.8E-06 54.6 13.3 61 369-429 581-642 (1060)
283 KOG2396 HAT (Half-A-TPR) repea 95.1 0.17 3.8E-06 50.3 9.9 87 335-436 88-175 (568)
284 KOG3364 Membrane protein invol 95.0 0.11 2.5E-06 42.5 7.2 80 321-413 35-117 (149)
285 PF06957 COPI_C: Coatomer (COP 95.0 0.12 2.6E-06 51.2 8.7 121 314-434 200-333 (422)
286 PLN03077 Protein ECB2; Provisi 94.9 0.22 4.7E-06 55.1 11.8 62 368-429 658-719 (857)
287 COG3947 Response regulator con 94.9 0.11 2.5E-06 48.1 7.8 73 356-428 268-340 (361)
288 PF04184 ST7: ST7 protein; In 94.9 0.32 7E-06 48.6 11.4 103 320-435 261-380 (539)
289 PF13374 TPR_10: Tetratricopep 94.8 0.068 1.5E-06 34.0 4.5 30 401-430 2-31 (42)
290 PF12862 Apc5: Anaphase-promot 94.8 0.18 4E-06 39.0 7.7 65 327-397 7-71 (94)
291 PF10516 SHNi-TPR: SHNi-TPR; 94.7 0.057 1.2E-06 34.0 3.8 30 402-431 2-31 (38)
292 KOG2610 Uncharacterized conser 94.7 0.22 4.7E-06 47.2 9.2 108 319-426 104-234 (491)
293 PLN03218 maturation of RBCL 1; 94.7 0.48 1E-05 53.1 13.6 110 319-429 615-747 (1060)
294 PLN03081 pentatricopeptide (PP 94.7 0.35 7.5E-06 52.2 12.1 116 318-435 391-528 (697)
295 PF12862 Apc5: Anaphase-promot 94.3 0.16 3.5E-06 39.3 6.4 59 377-435 8-75 (94)
296 PRK13184 pknD serine/threonine 94.2 0.26 5.7E-06 53.9 9.9 101 323-436 480-587 (932)
297 KOG1585 Protein required for f 94.2 0.41 9E-06 43.4 9.4 99 324-431 116-220 (308)
298 PF07079 DUF1347: Protein of u 94.2 0.78 1.7E-05 45.3 12.0 113 313-426 374-520 (549)
299 COG4976 Predicted methyltransf 94.2 0.072 1.6E-06 47.7 4.5 61 326-401 3-63 (287)
300 KOG1915 Cell cycle control pro 93.9 0.62 1.4E-05 46.2 10.7 99 321-434 76-174 (677)
301 KOG1915 Cell cycle control pro 93.9 0.46 9.9E-06 47.1 9.8 54 377-430 447-500 (677)
302 KOG2053 Mitochondrial inherita 93.8 0.48 1E-05 50.3 10.5 99 321-435 46-144 (932)
303 KOG2796 Uncharacterized conser 93.8 0.6 1.3E-05 42.9 9.7 73 364-436 209-287 (366)
304 PF10300 DUF3808: Protein of u 93.8 0.26 5.6E-06 50.3 8.4 86 331-431 246-335 (468)
305 KOG4814 Uncharacterized conser 93.7 0.28 6.2E-06 50.1 8.2 69 367-435 354-428 (872)
306 PLN03077 Protein ECB2; Provisi 93.3 0.85 1.8E-05 50.5 12.2 115 319-435 555-691 (857)
307 PF05843 Suf: Suppressor of fo 93.3 1.2 2.7E-05 42.1 11.7 99 321-434 38-140 (280)
308 KOG2300 Uncharacterized conser 93.1 1.5 3.2E-05 43.8 11.8 105 312-424 41-150 (629)
309 KOG2610 Uncharacterized conser 93.1 0.23 5E-06 47.0 6.1 86 328-428 185-274 (491)
310 PF07720 TPR_3: Tetratricopept 92.9 0.38 8.2E-06 29.9 5.0 33 402-434 2-36 (36)
311 PF09613 HrpB1_HrpK: Bacterial 92.8 2.1 4.5E-05 36.5 10.9 86 317-417 9-94 (160)
312 KOG1070 rRNA processing protei 92.7 0.85 1.8E-05 50.9 10.5 99 319-432 1531-1631(1710)
313 KOG1070 rRNA processing protei 92.7 1.2 2.7E-05 49.8 11.7 66 368-433 1531-1596(1710)
314 COG2976 Uncharacterized protei 92.7 1.8 3.9E-05 38.1 10.6 96 332-427 48-152 (207)
315 KOG0686 COP9 signalosome, subu 92.6 0.64 1.4E-05 45.2 8.5 98 318-427 150-255 (466)
316 KOG2300 Uncharacterized conser 92.5 2.5 5.5E-05 42.2 12.5 100 316-431 365-475 (629)
317 PF10516 SHNi-TPR: SHNi-TPR; 92.5 0.21 4.5E-06 31.5 3.4 30 368-397 2-31 (38)
318 PF04910 Tcf25: Transcriptiona 92.3 1.7 3.8E-05 42.6 11.5 101 332-435 8-138 (360)
319 PF14561 TPR_20: Tetratricopep 92.2 1.2 2.5E-05 34.2 8.1 76 337-427 7-84 (90)
320 KOG4507 Uncharacterized conser 91.9 0.27 5.9E-06 49.8 5.2 101 321-434 215-316 (886)
321 PF12968 DUF3856: Domain of Un 91.7 1.9 4.1E-05 34.7 8.7 75 318-396 55-129 (144)
322 KOG1550 Extracellular protein 91.2 1.8 3.9E-05 45.2 10.8 92 321-431 291-394 (552)
323 PF08631 SPO22: Meiosis protei 91.2 2.9 6.3E-05 39.5 11.4 85 328-420 3-103 (278)
324 PF02259 FAT: FAT domain; Int 91.0 3.1 6.7E-05 40.3 11.9 108 316-434 144-291 (352)
325 PF11817 Foie-gras_1: Foie gra 91.0 1.4 3E-05 40.9 8.8 64 322-394 182-245 (247)
326 PF10579 Rapsyn_N: Rapsyn N-te 90.9 2.5 5.5E-05 31.3 8.2 61 370-430 9-72 (80)
327 PF09670 Cas_Cas02710: CRISPR- 90.8 2.9 6.4E-05 41.4 11.3 101 317-430 130-270 (379)
328 PF07721 TPR_4: Tetratricopept 90.1 0.41 8.9E-06 27.2 2.9 23 403-425 3-25 (26)
329 COG2912 Uncharacterized conser 90.0 2 4.4E-05 39.8 8.7 75 322-411 185-259 (269)
330 KOG0292 Vesicle coat complex C 89.4 3.1 6.7E-05 44.5 10.4 121 315-435 988-1118(1202)
331 COG5191 Uncharacterized conser 89.0 0.51 1.1E-05 44.3 4.0 69 368-436 108-177 (435)
332 PF10602 RPN7: 26S proteasome 89.0 2.8 6E-05 36.7 8.6 66 366-431 35-103 (177)
333 COG0790 FOG: TPR repeat, SEL1 88.6 6.8 0.00015 37.0 11.8 98 319-432 110-222 (292)
334 COG3898 Uncharacterized membra 88.5 5.7 0.00012 38.8 10.7 98 328-433 198-295 (531)
335 PF11817 Foie-gras_1: Foie gra 88.3 5 0.00011 37.1 10.3 85 335-428 155-245 (247)
336 PF09986 DUF2225: Uncharacteri 87.8 4.2 9.1E-05 36.8 9.2 84 317-409 117-208 (214)
337 PF10345 Cohesin_load: Cohesin 87.8 6.5 0.00014 41.7 12.1 110 318-427 301-430 (608)
338 cd02681 MIT_calpain7_1 MIT: do 87.8 4.6 9.9E-05 29.9 7.7 34 316-349 4-37 (76)
339 PF07720 TPR_3: Tetratricopept 87.5 1.6 3.5E-05 27.1 4.4 32 369-400 3-36 (36)
340 COG3898 Uncharacterized membra 87.5 11 0.00023 36.9 11.9 95 320-429 122-216 (531)
341 TIGR02561 HrpB1_HrpK type III 87.4 11 0.00024 31.8 10.5 84 319-417 11-94 (153)
342 PF13281 DUF4071: Domain of un 87.2 7.3 0.00016 38.2 11.0 66 368-433 180-258 (374)
343 KOG3617 WD40 and TPR repeat-co 87.1 4 8.8E-05 43.5 9.4 103 326-429 808-940 (1416)
344 cd02679 MIT_spastin MIT: domai 86.8 7.5 0.00016 29.0 8.4 67 314-380 4-76 (79)
345 PF10255 Paf67: RNA polymerase 86.8 1.3 2.8E-05 43.9 5.6 59 370-429 125-192 (404)
346 COG3914 Spy Predicted O-linked 86.8 6.4 0.00014 40.4 10.5 98 324-436 73-177 (620)
347 PF07721 TPR_4: Tetratricopept 86.7 0.8 1.7E-05 26.0 2.5 24 368-391 2-25 (26)
348 PF04212 MIT: MIT (microtubule 86.6 3.7 8.1E-05 29.5 6.7 35 315-349 2-36 (69)
349 PF13281 DUF4071: Domain of un 86.5 12 0.00025 36.8 11.9 101 319-433 180-337 (374)
350 KOG1550 Extracellular protein 86.3 7.8 0.00017 40.5 11.5 100 318-429 244-356 (552)
351 PF10373 EST1_DNA_bind: Est1 D 86.0 3.1 6.8E-05 38.9 7.8 62 337-413 1-62 (278)
352 PF10345 Cohesin_load: Cohesin 85.9 14 0.0003 39.2 13.3 106 316-431 57-169 (608)
353 cd02682 MIT_AAA_Arch MIT: doma 85.8 6.8 0.00015 28.8 7.6 36 315-350 3-38 (75)
354 PF14863 Alkyl_sulf_dimr: Alky 85.6 2.7 5.9E-05 35.2 6.2 52 368-419 71-122 (141)
355 KOG3617 WD40 and TPR repeat-co 85.6 3.4 7.4E-05 44.0 8.0 63 368-430 913-996 (1416)
356 cd02684 MIT_2 MIT: domain cont 85.4 4.2 9.1E-05 30.0 6.5 35 315-349 3-37 (75)
357 cd02683 MIT_1 MIT: domain cont 85.3 6 0.00013 29.3 7.3 34 316-349 4-37 (77)
358 PF04910 Tcf25: Transcriptiona 84.9 12 0.00025 36.9 11.3 107 312-432 97-224 (360)
359 KOG2422 Uncharacterized conser 84.9 18 0.0004 37.1 12.5 85 313-401 286-377 (665)
360 TIGR03504 FimV_Cterm FimV C-te 84.8 1.7 3.7E-05 28.3 3.6 25 405-429 3-27 (44)
361 KOG0530 Protein farnesyltransf 84.6 8.1 0.00018 35.7 9.1 25 328-352 53-77 (318)
362 COG3118 Thioredoxin domain-con 84.5 2.8 6.1E-05 39.3 6.3 55 372-426 139-193 (304)
363 PF09613 HrpB1_HrpK: Bacterial 83.6 8.9 0.00019 32.7 8.5 69 367-435 10-78 (160)
364 cd02678 MIT_VPS4 MIT: domain c 83.5 7.1 0.00015 28.7 7.1 35 315-349 3-37 (75)
365 COG2909 MalT ATP-dependent tra 83.2 23 0.0005 38.3 13.0 110 315-430 412-526 (894)
366 KOG1839 Uncharacterized protei 82.4 5.7 0.00012 44.5 8.6 109 316-431 971-1087(1236)
367 TIGR02710 CRISPR-associated pr 82.1 18 0.00039 35.6 11.1 63 319-391 131-195 (380)
368 PF04781 DUF627: Protein of un 81.8 6.4 0.00014 31.3 6.5 62 373-434 2-77 (111)
369 cd02677 MIT_SNX15 MIT: domain 81.8 12 0.00026 27.6 7.6 36 315-350 3-38 (75)
370 PF08424 NRDE-2: NRDE-2, neces 81.6 15 0.00033 35.4 10.6 53 383-435 47-99 (321)
371 PF11207 DUF2989: Protein of u 81.5 10 0.00022 33.8 8.3 53 368-421 142-198 (203)
372 cd02680 MIT_calpain7_2 MIT: do 80.9 3.5 7.5E-05 30.4 4.4 35 316-350 4-38 (75)
373 cd02682 MIT_AAA_Arch MIT: doma 80.8 9.5 0.00021 28.1 6.6 43 370-412 9-58 (75)
374 COG0790 FOG: TPR repeat, SEL1 80.7 12 0.00025 35.4 9.4 86 326-430 49-142 (292)
375 cd02656 MIT MIT: domain contai 79.7 17 0.00038 26.5 8.0 35 315-349 3-37 (75)
376 smart00745 MIT Microtubule Int 79.0 19 0.00042 26.3 8.2 35 315-349 5-39 (77)
377 COG5159 RPN6 26S proteasome re 79.0 27 0.00058 32.9 10.4 71 360-430 118-194 (421)
378 PRK15180 Vi polysaccharide bio 78.2 17 0.00038 36.5 9.5 116 318-433 289-423 (831)
379 TIGR03504 FimV_Cterm FimV C-te 78.0 3.7 8.1E-05 26.8 3.4 26 370-395 2-27 (44)
380 COG2909 MalT ATP-dependent tra 77.9 28 0.0006 37.7 11.5 88 319-416 459-552 (894)
381 KOG0529 Protein geranylgeranyl 77.5 43 0.00092 33.1 11.8 57 378-434 86-144 (421)
382 COG3629 DnrI DNA-binding trans 77.3 12 0.00026 35.1 8.0 66 316-396 151-216 (280)
383 COG4455 ImpE Protein of avirul 76.6 8 0.00017 34.8 6.1 60 376-435 10-69 (273)
384 KOG1463 26S proteasome regulat 76.4 14 0.0003 35.5 8.0 104 322-432 213-318 (411)
385 KOG2581 26S proteasome regulat 76.4 27 0.00059 34.4 10.1 69 367-435 209-281 (493)
386 PF11207 DUF2989: Protein of u 75.6 12 0.00025 33.3 6.9 59 317-387 140-198 (203)
387 KOG1464 COP9 signalosome, subu 75.5 9.1 0.0002 35.5 6.4 51 379-429 39-93 (440)
388 KOG1839 Uncharacterized protei 74.8 5.1 0.00011 44.8 5.4 107 316-430 930-1044(1236)
389 PF11846 DUF3366: Domain of un 74.7 12 0.00025 33.1 7.0 52 382-434 126-177 (193)
390 PF09205 DUF1955: Domain of un 74.7 25 0.00053 29.2 7.9 60 370-429 88-148 (161)
391 PF07163 Pex26: Pex26 protein; 74.2 47 0.001 31.2 10.6 116 319-436 36-152 (309)
392 KOG2047 mRNA splicing factor [ 73.5 34 0.00074 35.8 10.4 32 316-347 423-454 (835)
393 PHA02537 M terminase endonucle 73.4 29 0.00062 31.7 9.1 104 328-434 93-211 (230)
394 KOG2041 WD40 repeat protein [G 72.9 14 0.00031 38.7 7.7 86 328-426 770-877 (1189)
395 PF08424 NRDE-2: NRDE-2, neces 72.4 39 0.00085 32.6 10.5 82 334-430 47-131 (321)
396 KOG0739 AAA+-type ATPase [Post 71.9 20 0.00043 34.0 7.7 35 314-348 6-40 (439)
397 KOG2047 mRNA splicing factor [ 71.6 49 0.0011 34.7 11.0 99 321-431 390-507 (835)
398 COG3914 Spy Predicted O-linked 71.4 14 0.00031 38.0 7.2 95 329-436 41-137 (620)
399 KOG0529 Protein geranylgeranyl 68.6 27 0.00058 34.5 8.1 92 328-434 85-182 (421)
400 PF07079 DUF1347: Protein of u 67.9 95 0.0021 31.3 11.7 99 319-427 7-105 (549)
401 PF12739 TRAPPC-Trs85: ER-Golg 67.6 57 0.0012 32.7 10.8 102 320-430 210-329 (414)
402 smart00386 HAT HAT (Half-A-TPR 67.4 14 0.00031 21.1 4.2 29 381-409 1-29 (33)
403 PF01239 PPTA: Protein prenylt 67.0 22 0.00047 20.8 4.8 29 386-414 2-30 (31)
404 COG4649 Uncharacterized protei 66.1 91 0.002 27.3 9.9 98 320-429 96-195 (221)
405 KOG3783 Uncharacterized conser 65.9 29 0.00063 35.4 8.1 64 370-433 452-523 (546)
406 KOG0546 HSP90 co-chaperone CPR 65.5 4.9 0.00011 38.6 2.5 80 324-418 281-360 (372)
407 PF15015 NYD-SP12_N: Spermatog 65.2 19 0.00041 35.7 6.4 61 374-434 183-261 (569)
408 KOG2422 Uncharacterized conser 65.2 37 0.00081 35.0 8.6 111 322-435 239-377 (665)
409 PRK15180 Vi polysaccharide bio 64.9 18 0.0004 36.3 6.3 45 377-421 401-448 (831)
410 KOG3540 Beta amyloid precursor 64.6 27 0.00058 35.0 7.3 89 338-434 291-381 (615)
411 COG4455 ImpE Protein of avirul 64.0 1E+02 0.0022 28.0 10.2 63 324-401 7-69 (273)
412 TIGR02561 HrpB1_HrpK type III 64.0 40 0.00087 28.5 7.3 66 368-433 11-76 (153)
413 PF04053 Coatomer_WDAD: Coatom 63.9 37 0.0008 34.4 8.6 24 369-392 349-372 (443)
414 COG4941 Predicted RNA polymera 62.2 29 0.00063 33.3 6.9 67 369-435 331-399 (415)
415 COG1747 Uncharacterized N-term 62.1 1.2E+02 0.0027 31.0 11.5 118 316-434 130-292 (711)
416 PRK13184 pknD serine/threonine 62.1 54 0.0012 36.5 10.0 64 370-435 555-625 (932)
417 PF04190 DUF410: Protein of un 61.8 97 0.0021 28.9 10.5 100 316-425 8-114 (260)
418 cd02683 MIT_1 MIT: domain cont 61.7 59 0.0013 24.0 7.3 20 383-402 29-48 (77)
419 KOG0985 Vesicle coat protein c 61.5 26 0.00057 38.6 7.2 83 321-431 1197-1309(1666)
420 KOG2561 Adaptor protein NUB1, 61.4 94 0.002 31.1 10.3 112 314-429 159-295 (568)
421 KOG1310 WD40 repeat protein [G 60.9 13 0.00028 37.9 4.5 66 320-400 410-478 (758)
422 PF07219 HemY_N: HemY protein 60.8 50 0.0011 26.1 7.3 54 363-416 55-108 (108)
423 KOG3807 Predicted membrane pro 60.2 62 0.0013 31.1 8.6 53 368-420 276-330 (556)
424 COG3947 Response regulator con 60.1 45 0.00099 31.5 7.6 75 303-392 262-338 (361)
425 PF08238 Sel1: Sel1 repeat; I 59.9 26 0.00056 21.3 4.5 29 402-430 2-37 (39)
426 PF10255 Paf67: RNA polymerase 59.0 18 0.0004 35.9 5.3 68 322-396 126-193 (404)
427 PF10952 DUF2753: Protein of u 57.6 52 0.0011 26.8 6.6 66 370-435 4-88 (140)
428 PF14863 Alkyl_sulf_dimr: Alky 56.8 38 0.00081 28.4 6.1 49 318-374 70-118 (141)
429 PF09797 NatB_MDM20: N-acetylt 56.6 54 0.0012 32.2 8.3 47 380-426 196-242 (365)
430 KOG1463 26S proteasome regulat 56.6 2E+02 0.0043 28.0 12.8 69 361-429 122-196 (411)
431 KOG0985 Vesicle coat protein c 56.4 88 0.0019 34.8 9.9 58 367-429 1104-1161(1666)
432 PF12854 PPR_1: PPR repeat 56.0 31 0.00067 20.7 4.1 27 400-426 6-32 (34)
433 PF15469 Sec5: Exocyst complex 55.4 98 0.0021 26.9 9.0 25 327-351 95-119 (182)
434 smart00671 SEL1 Sel1-like repe 55.0 26 0.00057 20.7 3.8 28 402-429 2-33 (36)
435 PF04212 MIT: MIT (microtubule 53.7 27 0.00059 24.9 4.3 24 372-395 10-33 (69)
436 PF01535 PPR: PPR repeat; Int 53.2 21 0.00045 20.2 3.0 26 370-395 3-28 (31)
437 PF00244 14-3-3: 14-3-3 protei 53.1 50 0.0011 30.3 6.9 55 334-396 142-198 (236)
438 KOG2114 Vacuolar assembly/sort 52.4 71 0.0015 34.6 8.5 33 317-349 367-399 (933)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 52.3 1.3E+02 0.0028 24.5 11.4 99 318-428 25-126 (126)
440 cd02677 MIT_SNX15 MIT: domain 50.2 26 0.00055 25.8 3.6 29 368-396 7-35 (75)
441 KOG0530 Protein farnesyltransf 50.2 1.3E+02 0.0028 28.2 8.7 66 369-434 114-180 (318)
442 cd02681 MIT_calpain7_1 MIT: do 49.4 39 0.00084 24.9 4.5 30 367-396 6-35 (76)
443 PF10938 YfdX: YfdX protein; 49.3 1E+02 0.0022 26.2 7.7 72 316-395 73-145 (155)
444 PF08969 USP8_dimer: USP8 dime 49.1 66 0.0014 25.7 6.3 43 306-348 26-68 (115)
445 PF07219 HemY_N: HemY protein 49.1 69 0.0015 25.3 6.3 38 311-348 52-89 (108)
446 PF02064 MAS20: MAS20 protein 48.3 54 0.0012 26.6 5.5 40 311-350 56-95 (121)
447 KOG4563 Cell cycle-regulated h 48.2 33 0.00072 33.3 4.9 53 370-422 44-104 (400)
448 cd02679 MIT_spastin MIT: domai 46.3 33 0.00073 25.5 3.7 26 371-396 12-37 (79)
449 KOG4014 Uncharacterized conser 46.3 1.6E+02 0.0034 26.0 8.2 56 374-431 175-234 (248)
450 KOG1497 COP9 signalosome, subu 46.2 2.7E+02 0.0058 26.9 10.3 109 310-428 97-211 (399)
451 KOG3783 Uncharacterized conser 44.6 2E+02 0.0043 29.7 9.9 76 322-411 271-348 (546)
452 PHA02122 hypothetical protein 43.8 39 0.00084 23.0 3.3 20 63-83 39-58 (65)
453 PF04053 Coatomer_WDAD: Coatom 43.8 91 0.002 31.6 7.6 32 357-388 348-381 (443)
454 COG5091 SGT1 Suppressor of G2 43.7 59 0.0013 30.3 5.6 100 327-431 4-109 (368)
455 cd02678 MIT_VPS4 MIT: domain c 43.6 1.2E+02 0.0027 22.0 6.5 17 383-399 29-45 (75)
456 PF13812 PPR_3: Pentatricopept 43.5 53 0.0012 18.9 3.8 27 369-395 3-29 (34)
457 TIGR00756 PPR pentatricopeptid 43.4 47 0.001 19.0 3.6 26 370-395 3-28 (35)
458 PF00244 14-3-3: 14-3-3 protei 43.2 2.2E+02 0.0048 26.0 9.5 68 362-429 118-197 (236)
459 COG5159 RPN6 26S proteasome re 43.2 1.1E+02 0.0023 29.0 7.2 104 322-432 210-316 (421)
460 KOG4563 Cell cycle-regulated h 42.7 1.3E+02 0.0028 29.4 7.9 70 313-389 36-105 (400)
461 COG4649 Uncharacterized protei 42.6 69 0.0015 28.0 5.5 50 364-414 164-213 (221)
462 PF12753 Nro1: Nuclear pore co 41.8 48 0.001 32.7 5.0 45 383-429 334-390 (404)
463 KOG0890 Protein kinase of the 41.6 2.2E+02 0.0048 34.8 10.9 66 364-431 1667-1732(2382)
464 KOG2581 26S proteasome regulat 41.5 2.3E+02 0.0049 28.3 9.4 103 316-430 245-349 (493)
465 COG3014 Uncharacterized protei 41.0 1.7E+02 0.0037 28.4 8.3 116 315-433 122-245 (449)
466 PF05688 DUF824: Salmonella re 40.7 52 0.0011 21.8 3.5 35 60-99 7-41 (47)
467 KOG1497 COP9 signalosome, subu 40.7 1.1E+02 0.0023 29.5 6.8 66 362-428 98-171 (399)
468 COG5191 Uncharacterized conser 39.9 76 0.0017 30.3 5.8 73 324-411 113-189 (435)
469 KOG0890 Protein kinase of the 39.7 3.7E+02 0.0081 33.1 12.3 102 316-434 1668-1788(2382)
470 KOG1464 COP9 signalosome, subu 38.7 86 0.0019 29.4 5.9 55 330-395 39-93 (440)
471 KOG2758 Translation initiation 38.5 1.4E+02 0.0029 28.8 7.2 65 366-430 128-196 (432)
472 KOG2396 HAT (Half-A-TPR) repea 38.4 3E+02 0.0065 28.3 9.9 58 332-404 119-177 (568)
473 KOG0739 AAA+-type ATPase [Post 38.2 2.1E+02 0.0046 27.4 8.4 70 334-426 7-77 (439)
474 KOG2041 WD40 repeat protein [G 37.6 71 0.0015 33.9 5.7 53 376-428 769-823 (1189)
475 KOG0276 Vesicle coat complex C 37.5 75 0.0016 33.2 5.8 50 376-430 646-695 (794)
476 PF13041 PPR_2: PPR repeat fam 37.5 1.1E+02 0.0025 19.7 5.8 29 368-396 4-32 (50)
477 PF12309 KBP_C: KIF-1 binding 37.4 94 0.002 30.7 6.5 68 335-402 266-344 (371)
478 cd09243 BRO1_Brox_like Protein 37.0 4.1E+02 0.009 26.0 13.1 146 285-430 75-277 (353)
479 KOG1258 mRNA processing protei 36.9 4.3E+02 0.0093 27.6 11.1 47 376-422 375-421 (577)
480 PF03745 DUF309: Domain of unk 36.6 1.5E+02 0.0032 20.8 6.5 59 322-389 3-61 (62)
481 PF02184 HAT: HAT (Half-A-TPR) 36.4 78 0.0017 19.1 3.5 27 382-409 2-28 (32)
482 KOG3807 Predicted membrane pro 36.3 3.6E+02 0.0077 26.2 9.6 34 399-432 271-306 (556)
483 KOG1914 mRNA cleavage and poly 36.2 1.7E+02 0.0036 30.4 7.8 62 367-429 20-81 (656)
484 cd02680 MIT_calpain7_2 MIT: do 36.1 71 0.0015 23.5 4.1 26 370-395 9-34 (75)
485 KOG4014 Uncharacterized conser 36.1 1.8E+02 0.0038 25.7 7.0 64 332-414 87-157 (248)
486 KOG3616 Selective LIM binding 36.0 1.6E+02 0.0034 31.7 7.8 108 321-428 768-909 (1636)
487 KOG3677 RNA polymerase I-assoc 35.6 49 0.0011 32.8 4.0 51 375-429 243-300 (525)
488 PF09122 DUF1930: Domain of un 35.5 55 0.0012 23.0 3.1 23 248-270 35-57 (68)
489 smart00101 14_3_3 14-3-3 homol 35.4 1.2E+02 0.0026 28.0 6.4 54 334-395 144-199 (244)
490 KOG4322 Anaphase-promoting com 35.3 4.7E+02 0.01 26.3 10.5 107 315-430 270-382 (482)
491 KOG0276 Vesicle coat complex C 34.8 2.3E+02 0.005 29.8 8.7 75 318-392 666-746 (794)
492 TIGR00985 3a0801s04tom mitocho 34.3 1.2E+02 0.0025 25.7 5.6 40 311-350 83-123 (148)
493 cd00280 TRFH Telomeric Repeat 34.0 1.9E+02 0.004 25.5 6.8 44 372-416 116-159 (200)
494 PF10938 YfdX: YfdX protein; 33.8 3E+02 0.0064 23.4 8.7 110 319-429 3-145 (155)
495 cd02656 MIT MIT: domain contai 33.2 96 0.0021 22.4 4.5 26 370-395 9-34 (75)
496 PRK11619 lytic murein transgly 32.4 3.2E+02 0.0069 29.3 9.9 53 377-429 322-374 (644)
497 cd08977 SusD starch binding ou 31.5 4.9E+02 0.011 25.2 10.8 48 383-430 141-210 (359)
498 KOG3616 Selective LIM binding 30.8 3.8E+02 0.0083 29.0 9.6 36 399-434 993-1028(1636)
499 PHA02537 M terminase endonucle 30.1 2.2E+02 0.0047 26.0 7.1 37 364-400 166-211 (230)
500 PRK15490 Vi polysaccharide bio 30.0 1.7E+02 0.0037 30.6 7.1 53 371-425 46-98 (578)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-59 Score=436.32 Aligned_cols=323 Identities=47% Similarity=0.761 Sum_probs=297.4
Q ss_pred EccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCC
Q 013755 54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE 133 (437)
Q Consensus 54 ~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~ 133 (437)
++|+|+++|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.|.+|.||+.++..|+.|+ .
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~----------------~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGE----------------A 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccccc----------------c
Confidence 4799999999999999999999999999999999 7999999999999999999999999844 3
Q ss_pred CCC-CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEecccc-CCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEE
Q 013755 134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL 211 (437)
Q Consensus 134 ~~~-~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g-~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~ 211 (437)
+.+ .||++.++.|+|+|. ||+++|+|+++|.| ..+|..+..|.++|.+.+.++
T Consensus 64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~--------------- 118 (397)
T KOG0543|consen 64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG--------------- 118 (397)
T ss_pred CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc---------------
Confidence 444 799999999999987 89999999999999 889999888888776666554
Q ss_pred EEEEEEEEecCccEEeecCCCCCCCeEEEcCC-CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCce
Q 013755 212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK 290 (437)
Q Consensus 212 ~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~-~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~ 290 (437)
+|+++ ...+.|.+|+ ..||.||+.||++|++||++.|+|+|+|+||..+... +.|||+++
T Consensus 119 -------------~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~--p~IPPnA~ 179 (397)
T KOG0543|consen 119 -------------VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEP--PLIPPNAT 179 (397)
T ss_pred -------------ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCC--CCCCCCce
Confidence 34433 3458888888 5899999999999999999999999999999544432 48999999
Q ss_pred EEEEEEEeeee-cccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHH
Q 013755 291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369 (437)
Q Consensus 291 l~~~vel~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~ 369 (437)
+.|+|+|++|. +....|.+..++++..+...++.||.+|+.|+|..|+..|++|+..+.+...+++++......++..+
T Consensus 180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~ 259 (397)
T KOG0543|consen 180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC 259 (397)
T ss_pred EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
++|+|.||+++++|.+|+..|+++|+++|+|+|||||+|+||+.+++|+.|+.+|++|++++|+|+++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999753
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.8e-28 Score=209.85 Aligned_cols=247 Identities=25% Similarity=0.373 Sum_probs=202.0
Q ss_pred CccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755 162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (437)
Q Consensus 162 dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~ 240 (437)
..++.|+|+..|.|. ..-.+|..|++||.....+. .+++.|+| ...+.|++++
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmeii 62 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEII 62 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEEe
Confidence 356789999999983 23446777777776554332 23455555 5678999999
Q ss_pred cCCCCcchHHHHHhcccccCcEEEEEEcCC----CCCCcc-------cccc--------c----c-----------ccCC
Q 013755 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHE----YGFGNV-------EAKR--------D----L-----------ATIP 286 (437)
Q Consensus 241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~----~~yg~~-------~~~~--------~----~-----------~~ip 286 (437)
+|..--.+-|+.+|.+|+++|.+.|+|+-. |.|-+. |..+ . + ....
T Consensus 63 iGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~k 142 (329)
T KOG0545|consen 63 IGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQK 142 (329)
T ss_pred eccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhh
Confidence 999999999999999999999999999732 222111 0000 0 0 0011
Q ss_pred CCceEEEEEEEeeeecc----cCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccC---CCCChHHH
Q 013755 287 SCAKLYYEVEMMDFIKE----KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED---GSFVDDEQ 359 (437)
Q Consensus 287 ~~~~l~~~vel~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~---~~~~~~~~ 359 (437)
..++|+|.|+|+.++.. .++|+|+.+++++....+.++||.+|+.|+|.+|...|+.|+.++.+. ....+.+|
T Consensus 143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW 222 (329)
T KOG0545|consen 143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW 222 (329)
T ss_pred CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH
Confidence 23589999999999754 578999999999999999999999999999999999999999887553 23446899
Q ss_pred HHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 360 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.++......+++|.++|++..++|-+++++|..+|..+|.|.+|||++|+++...-+.++|.++|.++|+++|.-
T Consensus 223 ~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 223 LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.8e-28 Score=177.58 Aligned_cols=105 Identities=41% Similarity=0.768 Sum_probs=102.1
Q ss_pred CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCC
Q 013755 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126 (437)
Q Consensus 47 g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~ 126 (437)
|+.++++..|+|...|+.||+|++||++.+.||+.|+||.+++.||.|.+|.|++|.||++++..|.+|+++++ +|.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence 78999999999988899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755 127 ELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (437)
Q Consensus 127 ~~ayg~~~~~-~i~~~~~~~f~v~l~~~ 153 (437)
++|||..+.+ .||||++|+|+|||+++
T Consensus 80 d~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 9999999988 99999999999999875
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-27 Score=198.49 Aligned_cols=176 Identities=28% Similarity=0.408 Sum_probs=133.9
Q ss_pred EEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEeceeeeecc---CCCccceEEEE
Q 013755 94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDL---SKDGGIVKKIL 170 (437)
Q Consensus 94 ~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~~~~~d~---~~dg~v~k~i~ 170 (437)
|.+|.+.+|++++.++.+|..|+++++ .+||+++||..+.. ....+++.+.+.......-. ..+..+.-.++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~ 75 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL 75 (188)
T ss_pred CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence 357888999999999999999999999 99999999955432 22235666665554432211 12222222222
Q ss_pred eccc-cCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchH
Q 013755 171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249 (437)
Q Consensus 171 ~~G~-g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~g 249 (437)
..-. .......+|.+. +||++.+.||+.|||| |+++.|++|+||.++||+|
T Consensus 76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG 127 (188)
T KOG0549|consen 76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG 127 (188)
T ss_pred ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence 2211 112222233322 4888888999999999 9999999999999999999
Q ss_pred HHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccC
Q 013755 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305 (437)
Q Consensus 250 l~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~ 305 (437)
||++|.+|++||+..++|||+++||+.|.+. .||+++.|+|+|+|+.+.....
T Consensus 128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 128 WDQGLLGMCVGEKRKLIIPPHLGYGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred HhHHhhhhCcccceEEecCccccCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 9999999999999999999999999999886 5999999999999999987643
No 5
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-28 Score=207.01 Aligned_cols=112 Identities=44% Similarity=0.671 Sum_probs=106.2
Q ss_pred CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCc
Q 013755 37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE 116 (437)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~ 116 (437)
....+.++++|++|++++.|+| +.|..||.|+|||++++.||++||||+++|.|+.|.+| ++|+||.++|.+|++|+
T Consensus 92 k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~ 168 (205)
T COG0545 92 KEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGG 168 (205)
T ss_pred ccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCc
Confidence 3445678999999999999999 99999999999999999999999999999999999999 99999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755 117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (437)
Q Consensus 117 ~~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~ 153 (437)
++++ +|||++|||..+.+ .||||++|+|+|+|+++
T Consensus 169 k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 169 KRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999 99999999999966 69999999999999876
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90 E-value=1.5e-23 Score=186.57 Aligned_cols=111 Identities=35% Similarity=0.555 Sum_probs=105.1
Q ss_pred CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755 38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC 117 (437)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~ 117 (437)
...+.++++|++|+++++|+| ..|..||.|.|||++++.||++|+||+.++.|+.|.+| ++++||+++|.+|++|++
T Consensus 94 ~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k 170 (206)
T PRK11570 94 KEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSK 170 (206)
T ss_pred cCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCE
Confidence 445678999999999999999 89999999999999999999999999998899999997 799999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755 118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (437)
Q Consensus 118 ~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~ 153 (437)
++| +|||++|||..+.+ .|||+++++|+|+|+++
T Consensus 171 ~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 171 WEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred EEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 999 99999999999887 89999999999999876
No 7
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-23 Score=154.26 Aligned_cols=107 Identities=30% Similarity=0.506 Sum_probs=97.3
Q ss_pred cceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC
Q 013755 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243 (437)
Q Consensus 164 ~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~ 243 (437)
++-+.++..|+|...|..++.|++ ||++.|.||+.|||+ .+++.|+.|.+|.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk 53 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK 53 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence 367889999999999999998887 556667788889988 8999999999999
Q ss_pred CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (437)
Q Consensus 244 ~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~ 301 (437)
+.||.|||+++..|.+||++.+.|+|+|+||..|.+. .||||++|.|+|||++++
T Consensus 54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~---~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPG---GIPPNATLVFDVELLKVN 108 (108)
T ss_pred cceeechhhcchhccccccceeeeccccccCCCCCCC---ccCCCcEEEEEEEEEecC
Confidence 9999999999999999999999999999999999776 799999999999999863
No 8
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.6e-23 Score=180.15 Aligned_cols=108 Identities=34% Similarity=0.608 Sum_probs=104.3
Q ss_pred eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeE-EEeCCccccccHHHHhccccCCceEE
Q 013755 42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV 119 (437)
Q Consensus 42 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~-~~~g~~~~~~g~~~~l~~m~~G~~~~ 119 (437)
.++++||+|+.++.|.| +.+..|+.|.|||++++. +|++|+++... .|+. |.+|.+.+|+||+.+|.||++|++++
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 47899999999999999 999999999999999998 99999999886 8999 99999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcEEEEEEEece
Q 013755 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153 (437)
Q Consensus 120 ~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~ 153 (437)
| +|||++|||..+.+.||+|++|+|+|+|+.+
T Consensus 194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence 9 9999999999999999999999999999875
No 9
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=169.87 Aligned_cols=110 Identities=36% Similarity=0.608 Sum_probs=98.4
Q ss_pred cCCCeEEEEEEccC-CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEE
Q 013755 44 GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF 122 (437)
Q Consensus 44 ~~~g~~~~~~~~G~-g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~ 122 (437)
+.++++..++..-+ =..+.+.||.|.+||++.+.||++|+||+.+++|+.|.+|.+++|+||+.+|.+|.+||++++
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl-- 143 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL-- 143 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--
Confidence 34556666665422 137789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceee
Q 013755 123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT 155 (437)
Q Consensus 123 ~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~ 155 (437)
.|||+++||+++.+ .||+++.|+|+|+|.++..
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence 99999999999977 7999999999999999864
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.1e-22 Score=187.74 Aligned_cols=271 Identities=22% Similarity=0.248 Sum_probs=191.1
Q ss_pred ecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCC-ccccccHHHHhccccCCceEEE
Q 013755 43 LGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVF 120 (437)
Q Consensus 43 ~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~-~~~~~g~~~~l~~m~~G~~~~~ 120 (437)
+.+++|.++|+++|.| ...|.+|.+|.|||.+++.++ +|+++. -.|.|.+|. ..+|.||+.+|..|++|+.+.|
T Consensus 81 l~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 81 LLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred ccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 3499999999999999 788999999999999999777 777653 337888887 5799999999999999999999
Q ss_pred EEecCCCCCCCCCC-CC-CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCee
Q 013755 121 TFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTM 198 (437)
Q Consensus 121 ~~~ip~~~ayg~~~-~~-~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~ 198 (437)
+|+|.|+||+.+ ++ .|||++++.|+|+|+++....+.+..-... .++... +.
T Consensus 157 --~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~-e~l~~A-----------------------~~ 210 (397)
T KOG0543|consen 157 --TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE-ERLEAA-----------------------DR 210 (397)
T ss_pred --EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH-HHHHHH-----------------------HH
Confidence 999999999444 44 999999999999999985222211100000 000000 00
Q ss_pred eeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCC-CcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755 199 VAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (437)
Q Consensus 199 v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~-~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~ 277 (437)
+. ..|+. -|.-|.- ....-.+.|+.-| ..+..
T Consensus 211 ~k--------------------e~Gn~------------~fK~gk~~~A~~~Yerav~~l----------~~~~~----- 243 (397)
T KOG0543|consen 211 KK--------------------ERGNV------------LFKEGKFKLAKKRYERAVSFL----------EYRRS----- 243 (397)
T ss_pred HH--------------------HhhhH------------HHhhchHHHHHHHHHHHHHHh----------hcccc-----
Confidence 00 01111 0111110 1122223333222 11110
Q ss_pred cccccccCCCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChH
Q 013755 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD 357 (437)
Q Consensus 278 ~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~ 357 (437)
.++ +-.....--....+.+.+..+.+.++|..|+..+.++|.+.|.+.
T Consensus 244 -------~~~--------------------ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----- 291 (397)
T KOG0543|consen 244 -------FDE--------------------EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV----- 291 (397)
T ss_pred -------CCH--------------------HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch-----
Confidence 000 000011123345677899999999999999999999999988764
Q ss_pred HHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhCC
Q 013755 358 EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILA-ELDIKKAIEADP 432 (437)
Q Consensus 358 ~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l~P 432 (437)
.+++.+|.+++.+++|+.|+.+|++|++++|.|-.+...+..|..+..++.+. .+.|.+.+..-+
T Consensus 292 ----------KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 ----------KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred ----------hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77999999999999999999999999999999988888888888888777665 678888876544
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.88 E-value=2.6e-22 Score=174.38 Aligned_cols=111 Identities=31% Similarity=0.447 Sum_probs=102.9
Q ss_pred ceeecCCCeEEEEEEc--cCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755 40 ERGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC 117 (437)
Q Consensus 40 ~~~~~~~g~~~~~~~~--G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~ 117 (437)
....+++|++|++++. |+| .+|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+
T Consensus 63 ~~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 63 KYETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 3467999999999976 666 78999999999999999999999999875 6999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755 118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI 154 (437)
Q Consensus 118 ~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~ 154 (437)
++| +|||++|||.++.+ .||+|++++|+|+|+++.
T Consensus 141 ~~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 141 ATF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 999 99999999999876 899999999999999874
No 12
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.87 E-value=2e-21 Score=179.22 Aligned_cols=112 Identities=33% Similarity=0.598 Sum_probs=105.3
Q ss_pred CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755 39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118 (437)
Q Consensus 39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~ 118 (437)
..+.++++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ +++|||+++|.+|++|+++
T Consensus 139 ~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~ 215 (269)
T PRK10902 139 KGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKI 215 (269)
T ss_pred CCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEE
Confidence 34567999999999999999 89999999999999999999999999998899999986 7999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEeceee
Q 013755 119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT 155 (437)
Q Consensus 119 ~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~~~ 155 (437)
+| +||++++||..+.+.||++++++|+|+|.++..
T Consensus 216 ~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 216 KL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred EE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence 99 999999999998889999999999999998853
No 13
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7e-21 Score=163.42 Aligned_cols=106 Identities=36% Similarity=0.528 Sum_probs=94.9
Q ss_pred CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (437)
Q Consensus 161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~ 240 (437)
-.+++..++++.|.|. .|..++.|++ ||+|+|.||++||+| ++++.|+.|.
T Consensus 99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~ 149 (205)
T COG0545 99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP 149 (205)
T ss_pred CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence 4577889999999884 5666666665 778888999999999 9999999999
Q ss_pred cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (437)
Q Consensus 241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~ 300 (437)
|| .+|+||+++|..|++|++..++|||+++||..+.+. .||||++|+|+|+|+++
T Consensus 150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g---~Ippns~LvFeVeLl~v 204 (205)
T COG0545 150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPG---VIPPNSTLVFEVELLDV 204 (205)
T ss_pred cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCCCC---CCCCCCeEEEEEEEEec
Confidence 97 999999999999999999999999999999999775 59999999999999986
No 14
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=5.1e-19 Score=139.18 Aligned_cols=92 Identities=47% Similarity=0.805 Sum_probs=86.5
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCC-
Q 013755 58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD- 136 (437)
Q Consensus 58 g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~- 136 (437)
|.++|+.||.|+|||++++.+|++|++++..+.|+.|.+|.+++++||+++|.+|++|++++| .||++++||..+..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence 446799999999999999999999999988879999999999999999999999999999999 99999999999874
Q ss_pred -CCCCCCcEEEEEEEe
Q 013755 137 -SLPPNSVVQFEVELV 151 (437)
Q Consensus 137 -~i~~~~~~~f~v~l~ 151 (437)
.||++++++|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 699999999999985
No 15
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.5e-19 Score=160.39 Aligned_cols=108 Identities=34% Similarity=0.431 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
+....++.++.+||.+++.++|++|+..|.+||.+.|.+. ..|+|+|.+|.++|+|+.|+++|+.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA---------------VyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA---------------VYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc---------------hHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6788999999999999999999999999999999999876 5699999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
||.+||.+.++|.|+|.+|..+|+|++|++.|++||+++|+|+
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999999999999999999999999986
No 16
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.78 E-value=4.3e-19 Score=151.34 Aligned_cols=131 Identities=25% Similarity=0.337 Sum_probs=96.0
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (437)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~ 140 (437)
.++.||.|+|||++++.||++|+||+..+.|+.|.+|.+++++||+++|.+|++|++++| .|||++|||.++...+..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~~v~~ 81 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPDLIQY 81 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence 678999999999999999999999998779999999999999999999999999999999 999999999987652111
Q ss_pred CCcEEEEE-EEeceeeeecc-CCCccc-eEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755 141 NSVVQFEV-ELVSWITVVDL-SKDGGI-VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (437)
Q Consensus 141 ~~~~~f~v-~l~~~~~~~d~-~~dg~v-~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~ 201 (437)
.+.-.|.- ....+.....+ ..+|.. .-+|+.- +++.|++|+||+++|.++.|+
T Consensus 82 vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i--------~~~~v~vD~NHPLAGk~L~f~ 137 (156)
T PRK15095 82 FSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREI--------NGDSITVDFNHPLAGQTVHFD 137 (156)
T ss_pred ecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence 11111100 00111111111 123433 2234333 457999999999999998774
No 17
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.7e-19 Score=148.39 Aligned_cols=131 Identities=28% Similarity=0.375 Sum_probs=97.5
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (437)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~ 140 (437)
.+++||.|+++|++++.||++|++|...+.|+.|.+|.+++++||+++|.+|.+|++.++ .|||+.|||++++..|..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~ 79 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR 79 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence 578999999999999999999999988668999999999999999999999999999999 999999999998763222
Q ss_pred CCcEEEEEE-Eeceeeeecc-CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755 141 NSVVQFEVE-LVSWITVVDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (437)
Q Consensus 141 ~~~~~f~v~-l~~~~~~~d~-~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~ 201 (437)
-+.-.|.-. -..+.+.... .+++.+.-+|+.- .++.|++||||++++.++.|+
T Consensus 80 vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V--------~~~~V~VDfNHpLAGktL~fe 134 (174)
T COG1047 80 VPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEV--------SGDRVTVDFNHPLAGKTLHFE 134 (174)
T ss_pred ecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEE--------cCCEEEEeCCCcCCCCeEEEE
Confidence 111112110 0111111111 1232233333322 357999999999999998885
No 18
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=9.5e-18 Score=143.09 Aligned_cols=114 Identities=40% Similarity=0.550 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
..+..+..++..||.+|+.|+|.+|...|..||.+.|..+ .+++..+|.|+|.|+++++.|+.|+..|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 3478899999999999999999999999999999998765 366788999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
||+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+.+
T Consensus 160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999999999999999999999999998753
No 19
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.73 E-value=4.6e-18 Score=148.56 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=95.8
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (437)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~ 140 (437)
+++++++|+|+|++++.+|++|++|+.. .|+.|.+|.++++|+|+++|.+|++|++++| .|||+.|||+++...+..
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~-~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~lV~~ 78 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDENLVQR 78 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCCC-CCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence 4789999999999999999999999864 8999999999999999999999999999999 999999999998762211
Q ss_pred CCcEEEE-EEEeceeeeecc-CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755 141 NSVVQFE-VELVSWITVVDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (437)
Q Consensus 141 ~~~~~f~-v~l~~~~~~~d~-~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~ 201 (437)
.+.-.|. ++-+.+.+.... ..++.+..+|+.- +.+.|+||+||+|++.++.|+
T Consensus 79 vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~ 133 (196)
T PRK10737 79 VPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFN 133 (196)
T ss_pred ecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence 1111120 000111111111 2334333334333 457999999999999998875
No 20
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=1.6e-16 Score=141.64 Aligned_cols=106 Identities=32% Similarity=0.522 Sum_probs=92.7
Q ss_pred CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (437)
Q Consensus 161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~ 240 (437)
.+.++..+|+++|.|. .|..++.|.++ |++++.||++||++ |.++.|+.|.
T Consensus 100 t~sGl~y~vi~~G~G~-~p~~~d~V~v~---------------------------Y~g~l~dG~vfdss-~~~g~P~~f~ 150 (206)
T PRK11570 100 TESGLQFRVLTQGEGA-IPARTDRVRVH---------------------------YTGKLIDGTVFDSS-VARGEPAEFP 150 (206)
T ss_pred CCCCcEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-cCCCCCeEEE
Confidence 4567899999999995 67888888775 55556678888888 8889999999
Q ss_pred cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (437)
Q Consensus 241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~ 300 (437)
+| .+++||+++|.+|++|+++.|+||++++||+.+... .|||+++|+|+|+|+++
T Consensus 151 l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~---~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 151 VN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAGA---SIPPFSTLVFEVELLEI 205 (206)
T ss_pred ee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC---CcCCCCeEEEEEEEEEE
Confidence 95 689999999999999999999999999999998764 69999999999999987
No 21
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.66 E-value=1.1e-15 Score=132.99 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=87.0
Q ss_pred CCccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEE
Q 013755 161 KDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239 (437)
Q Consensus 161 ~dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f 239 (437)
...++...++..+.|. ..|..++.|.++|.. ++.||++|+++ +. ..|..|
T Consensus 67 t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~---------------------------~~~dG~v~~ss-~~-~~P~~f 117 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDI---------------------------RALDGDVIYSE-EE-LGPQTY 117 (177)
T ss_pred CCCccEEEEEEecCCCCCcCCCCCEEEEEEEE---------------------------EeCCCCEEEeC-CC-CCCEEE
Confidence 3445566666553332 467788887775544 45566666666 44 459999
Q ss_pred EcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755 240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (437)
Q Consensus 240 ~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~ 301 (437)
.+|.+.+++||+++|.+|++||++.|.+|+++|||..+... .|||+++|+|+|+|+++.
T Consensus 118 ~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~---~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 118 KVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQN---KIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC---CcCcCCcEEEEEEEEEec
Confidence 99999999999999999999999999999999999988764 699999999999999985
No 22
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-15 Score=133.31 Aligned_cols=105 Identities=30% Similarity=0.478 Sum_probs=86.6
Q ss_pred CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEec-CccEEeecCCCCCCCeE-E
Q 013755 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLE-F 239 (437)
Q Consensus 162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~-~g~~fd~~~~~~~~p~~-f 239 (437)
.+++...=++.|.| ..|..++.|.+ +|.|++. +|.+||++ ..+.|+. |
T Consensus 119 ~~Gl~y~D~~vG~G-~~a~~G~rV~v---------------------------~Y~Gkl~~~GkvFd~~--~~~kp~~~f 168 (226)
T KOG0552|consen 119 PGGLRYEDLRVGSG-PSAKKGKRVSV---------------------------RYIGKLKGNGKVFDSN--FGGKPFKLF 168 (226)
T ss_pred CCCcEEEEEEecCC-CCCCCCCEEEE---------------------------EEEEEecCCCeEeecc--cCCCCcccc
Confidence 34555555666766 35555666665 5566665 78889987 5677888 9
Q ss_pred EcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755 240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (437)
Q Consensus 240 ~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~ 300 (437)
.+|.+.||+||+.++.+|++|.+.+|+|||.++||..+.. .||||++|+|+|+|+.+
T Consensus 169 ~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~~----~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 169 RLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGVP----EIPPNSTLVFDVELLSV 225 (226)
T ss_pred ccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCcC----cCCCCCcEEEEEEEEec
Confidence 9999999999999999999999999999999999998887 59999999999999876
No 23
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.63 E-value=4.6e-15 Score=116.58 Aligned_cols=93 Identities=31% Similarity=0.526 Sum_probs=78.3
Q ss_pred CCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhc
Q 013755 176 DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAA 255 (437)
Q Consensus 176 ~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~ 255 (437)
...|+.+|.|.++|..++ .+|++|+++ +..+.|++|.+|.+.+++||+.+|.
T Consensus 2 ~~~~~~gd~V~i~y~~~~---------------------------~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~ 53 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRL---------------------------EDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALI 53 (94)
T ss_dssp SSSBSTTSEEEEEEEEEE---------------------------TTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHT
T ss_pred CccCCCCCEEEEEEEEEE---------------------------CCCcEEEEe-eecCcceeeeeccCccccchhhhcc
Confidence 345777788877665544 455666666 6788999999999999999999999
Q ss_pred ccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEe
Q 013755 256 TMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMM 298 (437)
Q Consensus 256 ~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~ 298 (437)
+|+.||++.|.+|++++||+.+... ..||++++|+|+|+|+
T Consensus 54 ~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 54 GMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEEEEEEE
T ss_pred cccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEEEEEEC
Confidence 9999999999999999999988743 2599999999999985
No 24
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.60 E-value=1.3e-14 Score=134.19 Aligned_cols=108 Identities=30% Similarity=0.516 Sum_probs=93.3
Q ss_pred CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (437)
Q Consensus 161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~ 240 (437)
.+.++.++|+++|.|. .|..+|.|.++| .+++.||++|+++ +.++.|+.|.
T Consensus 144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~Y---------------------------~g~l~dG~vfdss-~~~g~p~~f~ 194 (269)
T PRK10902 144 TSTGLLYKVEKEGTGE-APKDSDTVVVNY---------------------------KGTLIDGKEFDNS-YTRGEPLSFR 194 (269)
T ss_pred CCCccEEEEEeCCCCC-CCCCCCEEEEEE---------------------------EEEeCCCCEeecc-ccCCCceEEe
Confidence 4567899999999995 688888888755 5555677888887 7888999999
Q ss_pred cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecc
Q 013755 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE 303 (437)
Q Consensus 241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~ 303 (437)
++ .+++||+.+|.+|++|+++.|+||++++||..+.. .||++++|+|+|+|+++...
T Consensus 195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~----gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP----GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence 95 69999999999999999999999999999998764 49999999999999999753
No 25
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.5e-15 Score=144.73 Aligned_cols=106 Identities=34% Similarity=0.481 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+.+...+..|+.+|+.|+|..|+.+|.+|+...|++. .+|.|+|.||.+++++..|+.+|+++++
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------------~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------------RLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3467778899999999999999999999999998875 7799999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++|++.++|+|.|.|+..+.+|++|++.|.+++++||++.+
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999865
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=7.6e-15 Score=140.57 Aligned_cols=102 Identities=34% Similarity=0.516 Sum_probs=96.8
Q ss_pred CChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH
Q 013755 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE 388 (437)
Q Consensus 309 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~ 388 (437)
+..+++.+.+..++.+||.+|+.|+|++||.+|.+||.+.|+.+-+ |.|+|.||..+|+|++.++
T Consensus 106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vie 170 (606)
T KOG0547|consen 106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVIE 170 (606)
T ss_pred cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHHH
Confidence 5678889999999999999999999999999999999999987644 9999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 013755 389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425 (437)
Q Consensus 389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 425 (437)
+|.+||+++|++++||+||+.++..+|++++|+.+..
T Consensus 171 d~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 171 DCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 9999999999999999999999999999999998875
No 27
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.57 E-value=5.2e-15 Score=135.97 Aligned_cols=111 Identities=32% Similarity=0.390 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~ 390 (437)
.++.+.....++++||.||++|+|++||.+|.+++...|.++ ..+.|+|.+|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---------------V~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---------------VYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc---------------cchhhHHHHHHHHHHHHHHHHhH
Confidence 456678888899999999999999999999999999999876 45899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+.|+.+|..+.+||.||+.+...+|+..+|.++++.+|+|+|++.+
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 9999999999999999999999999999999999999999998753
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.53 E-value=1e-13 Score=117.76 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=96.3
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...|..++..|+|++|+..|++++...|.+. .+++++|.++.++|++++|+..|+++++++|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---------------RAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 356789999999999999999999999988754 77999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++.+++++|.++..+|++++|+..|+++++++|++++
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999999999999999864
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.50 E-value=1.2e-13 Score=135.19 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=97.4
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..++.+|+.+|..++|++|+.+|.+||.+.|.+. .+|+++|.||+++|++++|+.++++++.++|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4578899999999999999999999999988753 6799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+++.+|+++|.+|+.+|+|++|+..|+++++++|+++.
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999864
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=2.2e-13 Score=143.56 Aligned_cols=133 Identities=28% Similarity=0.358 Sum_probs=115.3
Q ss_pred CCCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHh
Q 013755 285 IPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKS 364 (437)
Q Consensus 285 ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~ 364 (437)
+|+...+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|++|+..|++++.+.|+ +
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------ 160 (615)
T TIGR00990 95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------ 160 (615)
T ss_pred CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence 45555555555554433 355799999999999999999999999999999999999999999874 2
Q ss_pred hhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
..|+|+|.||+++|+|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+
T Consensus 161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4589999999999999999999999999999999999999999999999999999998887776543
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=1.1e-12 Score=110.03 Aligned_cols=105 Identities=12% Similarity=0.174 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.+..+.++..|..++..|++++|...|+-...++|.+. ..|+|||.|+..+|+|.+|+..|.+|+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---------------~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---------------DYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35577889999999999999999999999999988764 669999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.++|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999887433
No 32
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.7e-13 Score=127.77 Aligned_cols=110 Identities=28% Similarity=0.346 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
-..+.....++.||.+|+.|+|..|.++|..||.++|.+... .+.+|.|+|.++.++|+..+|+..|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 456788899999999999999999999999999999986533 578999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
|+.+||...++|.++|.||+.+++|++|+++|++|++++.+
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999998765
No 33
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.3e-13 Score=121.65 Aligned_cols=108 Identities=29% Similarity=0.370 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
-+.+..+++.||.||+.++|..|+..|.++|+..-.++. +.+.+|.|+|.|++.+|+|..|+.+|.+|+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999998766653 468999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
.++|.+.++++|-|.|++.|.++.+|..+++..++++-.
T Consensus 147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999999999988877644
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.9e-13 Score=129.99 Aligned_cols=103 Identities=25% Similarity=0.329 Sum_probs=98.3
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..++..||.+|..|+|+.|+.+|..|+.+.|.+. .+|.|++.||.++++|++|+++..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh---------------vlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH---------------VLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc---------------chhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999998854 569999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|+++++|+|+|.+++.+|+|++|+..|.+.|+.+|+|+
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~ 104 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK 104 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH
Confidence 99999999999999999999999999999999999986
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=6e-12 Score=105.67 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=98.1
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
....+...|..++..|++++|+..|++++...|.+. .++.++|.++.+++++++|+..+++++..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356688999999999999999999999999887653 67899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+|.++..++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999864
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=1e-11 Score=118.69 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..+..+|..+...|++++|+..|++++++.|+.. .+|+++|.++..+|++++|+..|+++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467799999999999999999999999999988753 7799999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++|++..+++++|.++...|++++|+++|+++++++|+++
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999875
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=4.6e-12 Score=93.26 Aligned_cols=66 Identities=33% Similarity=0.527 Sum_probs=63.9
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA-DLILAELDIKKAIEADP 432 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P 432 (437)
+.+|.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++|++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4678999999999999999999999999999999999999999999999 79999999999999998
No 38
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-11 Score=108.96 Aligned_cols=101 Identities=30% Similarity=0.308 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+.++++.||.+|...+|..|+.+|.+||.+.|... ..|.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~---------------~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA---------------SYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc---------------hhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 4578899999999999999999999999999998764 5589999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
++|+.++++|.+|.+++....|++|+..+.+|+.+-
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997664
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=7.1e-11 Score=105.82 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHH-HhccC--HHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC-LKLKD--YQGAIELCSK 392 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~~~~--~~~Ai~~~~~ 392 (437)
..+..+...|..+...|++++|+..|++|+++.|++. .+++++|.++ ...|+ +.+|+..+++
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---------------ELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3456788899999999999999999999999998764 6789999985 67787 5999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+++++|+++.+++.+|.+++.+|+|++|+..++++++++|.+.+
T Consensus 136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999999997653
No 40
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.25 E-value=2.6e-11 Score=103.59 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=56.7
Q ss_pred EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (437)
Q Consensus 214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~ 277 (437)
+||++++.||++||++ +..+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.+||...
T Consensus 13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 4677777788889888 77789999999999999999999999999999999999999999754
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.25 E-value=1.6e-10 Score=94.24 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=96.0
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
++.++..|..+++.|+|++|+..|.+++...|.... ...+++++|.++++.+++++|+..|++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 356789999999999999999999999998775432 23568899999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 398 CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 398 p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|++ +.+++.+|.++..++++++|+..|+++++..|++..
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 886 678999999999999999999999999999998863
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-11 Score=121.83 Aligned_cols=104 Identities=17% Similarity=0.077 Sum_probs=59.8
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
-+.++.+.||.|-..+.|++|+.+|.+|+.+.|+.. .++.|+|.+|+.+|..+-||.+|+++|++
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---------------~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---------------VAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch---------------hhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 356778888888888888888888888888777643 33444444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+|+.+.||.++|.++..+|+..+|.++|++||.+.|+++
T Consensus 316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 444444444444444444444444444444444444443
No 43
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=2.3e-10 Score=100.40 Aligned_cols=110 Identities=21% Similarity=0.178 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
.....+..+...|..++..|+|++|+.+|++++...+.... ...++.++|.++.++|++++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567788999999999999999999999999998664321 246789999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEIAD--------------LILAELDIKKAIEADPQN 434 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~lg~--------------~~~A~~~~~~al~l~P~n 434 (437)
++..+|++..+++.+|.+|..+++ +++|++.+++++.++|+|
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999888 688999999999999986
No 44
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-11 Score=117.63 Aligned_cols=101 Identities=25% Similarity=0.252 Sum_probs=55.4
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
++.+.+.||.+...|+++.|.++|.+|++..|.. +.+++|||.+|.++|++++|+.+|+.||.++
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 3445555555666666666666666666555442 2445555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
|..+++|.++|..|..+|+.+.|+.+|.+|+.++|.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 555555555555555555555555555555555543
No 45
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=9e-11 Score=85.20 Aligned_cols=65 Identities=25% Similarity=0.234 Sum_probs=60.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999985
No 46
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.15 E-value=2.9e-11 Score=116.92 Aligned_cols=105 Identities=27% Similarity=0.357 Sum_probs=99.3
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
.+..++.+|+.+|+.+.|+.|+..|.+|+++.|++. ..+.|+|.++++.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca---------------~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA---------------IYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce---------------eeechhhhhheeechhhhHHHHHHhhhhc
Confidence 467789999999999999999999999999999875 44889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+|...++|+|+|.+++.++++.+|+.+|++...+.|++++
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 9999999999999999999999999999999999999875
No 47
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=1.3e-10 Score=89.03 Aligned_cols=83 Identities=29% Similarity=0.358 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (437)
Q Consensus 331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~ 410 (437)
.++|+.|+..|++++...|.+. ....++++|.||+++|+|++|+..+++ +..+|.+...++.+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999988531 135688899999999999999999999 99999999999999999
Q ss_pred HHHhccHHHHHHHHHHH
Q 013755 411 YMEIADLILAELDIKKA 427 (437)
Q Consensus 411 ~~~lg~~~~A~~~~~~a 427 (437)
+..+|+|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999886
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.14 E-value=9.3e-10 Score=96.16 Aligned_cols=110 Identities=21% Similarity=0.092 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
.....+..+...|..++..|+|++|+..|++|+.+.+.... ...+++|+|.+|..+|++++|+.+|++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567888999999999999999999999999998654221 235799999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHH-------HhccHH-------HHHHHHHHHHHhCCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYM-------EIADLI-------LAELDIKKAIEADPQN 434 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~-------~lg~~~-------~A~~~~~~al~l~P~n 434 (437)
++.++|.+..+++++|.++. .+|+++ +|+..|++++.++|.+
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998 777766 6666667788888865
No 49
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=5.1e-10 Score=85.96 Aligned_cols=99 Identities=33% Similarity=0.445 Sum_probs=91.3
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...|..++..|++++|+..++++++..|... .+++++|.++...+++++|+.++++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 467889999999999999999999999876542 56889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
+..+++.+|.++..++++++|...+.+++++.|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999998874
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.11 E-value=7e-10 Score=117.08 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=69.9
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHHH-------HHHHhhhHHHhhhHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDEQ-------KLVKSLRVSCWLNSAACC 377 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~~-------~~~~~~~~~~~~nla~~~ 377 (437)
.+..+...|..++..|++++|+..|++++.+.|..... +.++. .........+++++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44567778888888999999999999999887754310 00000 001111234555555555
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.+|++++|+.+|+++++++|++..+++++|.++..+|++++|+..|++++++.|+++
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 5555555555555555555555555555555555555555555555555555555543
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.9e-10 Score=113.07 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=94.6
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
+....+|..|+-.++|++|+.+|+.||...|++. .+|+.||..+..-.+..+||..|++||++.|
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~---------------~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY---------------LLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH---------------HHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3444578889999999999999999999999875 6799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
..+++.|++|.+++.+|.|.+|+.+|-.||.+.+.+.
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999988743
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=4.7e-10 Score=103.79 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..++...+.|+.++.+|+|..|+.+|..|++.+|++. .+++.+|.+|+.+|+-..|+.+++++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y---------------~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY---------------QAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---------------HHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 5578889999999999999999999999999988753 6789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.|+..-|...+|.+++++|++++|.++|+++|+.+|++.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999764
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=4.7e-10 Score=82.42 Aligned_cols=67 Identities=30% Similarity=0.412 Sum_probs=62.4
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLD 395 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~ 395 (437)
.+..+...|..++..++|++|+..|+++++++|.+ ..+++++|.||.+++ ++.+|+.+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 36788999999999999999999999999998875 478999999999999 79999999999999
Q ss_pred hCC
Q 013755 396 CDC 398 (437)
Q Consensus 396 ~~p 398 (437)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.03 E-value=1.9e-09 Score=117.40 Aligned_cols=104 Identities=8% Similarity=-0.020 Sum_probs=92.0
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+...|..+.+.|++++|+..|++++.+.|++. .+++|+|.++..+|++++|+..|+++++++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34566778888888888888888888888877653 678999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|+++.+++++|.++..+|++++|+..|+++++++|++..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999999999999999999998753
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=2.6e-09 Score=98.66 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..++..|..++..|+|++|+..|++++...|.++. ...+++++|.+|++++++++|+..++++++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999886542 235689999999999999999999999999
Q ss_pred hCCCCHH---HHHHHHHHHHHh--------ccHHHHHHHHHHHHHhCCCCC
Q 013755 396 CDCHNVK---ALYRRAQAYMEI--------ADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 396 ~~p~~~~---a~~~~g~~~~~l--------g~~~~A~~~~~~al~l~P~n~ 435 (437)
.+|+++. +++.+|.++..+ +++++|+..|++++..+|++.
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 9998876 799999999987 899999999999999999875
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.5e-09 Score=106.56 Aligned_cols=108 Identities=20% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+++.|..+|..+.|.+|...|+.++...+....-. ..-...++|||.+|.++++|.+||.+++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 345566666667777777777777764433221100 012356899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++.++-..|.+|..+|+++.|++.|.+||.++|+|.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 999999999999999999999999999999999983
No 57
>PRK15331 chaperone protein SicA; Provisional
Probab=99.01 E-value=3.4e-09 Score=89.54 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+..+..+..|..+|..|+|++|...|+-...+++.++ ..++.||.|+..+++|++|+..|..|..
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~---------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP---------------DYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999888877664 5589999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
++++++...|+.|+||+.+|+.+.|+..|..++.
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.7e-09 Score=104.33 Aligned_cols=106 Identities=23% Similarity=0.196 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
...+..+...|..+|-.|++-.|...+.+++.+.|... .+|..+|.+|...++-.+-.++|++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 45578888999999999999999999999999988765 458999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+||.|+..||.||+.++-+++|++|+++|++|+.|+|+|.
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 99999999999999999999999999999999999999874
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=3.7e-09 Score=109.94 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=84.9
Q ss_pred hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (437)
Q Consensus 330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 409 (437)
..+++++|+..+++|+++.|++. .++..+|.++..+|++++|+..|++|++++|+++.+++.+|.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNP---------------QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34568999999999999998764 668899999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 410 AYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 410 ~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++..+|++++|+..|+++++++|.++.
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 999999999999999999999998753
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=5.7e-09 Score=92.02 Aligned_cols=108 Identities=25% Similarity=0.180 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
..-..+.....+|..|+..|++..|...+++||+.+|+.. .+|.-+|..|.++|+.+.|-+.|++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---------------~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---------------LAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHcCChhhHHHHHHH
Confidence 4456678888999999999999999999999999988754 3344455555555555555555555
Q ss_pred HHHhCCCC------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 393 VLDCDCHN------------------------------------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 393 al~~~p~~------------------------------------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|+.++|++ ...+-|+|.|.++.|+++.|..+|+++|+++|+++
T Consensus 95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 55555544 45566777777777777777777777777777765
No 61
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=2.3e-09 Score=91.10 Aligned_cols=81 Identities=15% Similarity=0.042 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 013755 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL 417 (437)
Q Consensus 338 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~ 417 (437)
..+|++++++.|.. +.++|.++.++|++++|+.+|++++.++|.+..+++.+|.++..+|++
T Consensus 13 ~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 45688888887642 567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 013755 418 ILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 418 ~~A~~~~~~al~l~P~n~~ 436 (437)
++|+..|+++++++|++++
T Consensus 75 ~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 75 TTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHHHHHHHHHHhcCCCCcH
Confidence 9999999999999999875
No 62
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.96 E-value=1.6e-08 Score=81.06 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHH
Q 013755 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (437)
Q Consensus 312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~ 391 (437)
...++....+-.+|..+...|+.+.|++.|.++|.+.|.. .++|+|+|.++..+|+.++|+++.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 3567888888899999999999999999999999999875 4789999999999999999999999
Q ss_pred HHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 392 KVLDCDCHNV----KALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 392 ~al~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
+|+++.-... .++..+|..|..+|+-+.|..+|+.|-++-.
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9999975443 6799999999999999999999999988754
No 63
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.5e-09 Score=88.82 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=54.1
Q ss_pred EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (437)
Q Consensus 214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~ 277 (437)
++|+.++.||++||++ .....|+.|.+|.+++++||+.||.+|.+|++..|.|||+-|||...
T Consensus 11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 4566666667777776 33478999999999999999999999999999999999999999764
No 64
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=1.2e-08 Score=95.16 Aligned_cols=105 Identities=9% Similarity=0.020 Sum_probs=92.9
Q ss_pred HHHHHHhhHH-HhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 319 GRKKEEGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 319 ~~~~~~g~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+..|..+ ++.|+|++|+..|++.+...|+... ...+++.+|.+|+..|+|++|+..|.+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4456666665 6789999999999999999987642 24678999999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 398 CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 398 p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|++ +.+++++|.++..+|++++|+..|+++++..|++.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 875 78899999999999999999999999999999875
No 65
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.93 E-value=2.7e-08 Score=82.36 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=96.0
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...++..|...++.|+|.+|+..|+......|...- ...+.+.|+.+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999998887543 24678899999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHhcc---------------HHHHHHHHHHHHHhCCCCC
Q 013755 398 CHNV---KALYRRAQAYMEIAD---------------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 398 p~~~---~a~~~~g~~~~~lg~---------------~~~A~~~~~~al~l~P~n~ 435 (437)
|+++ -|+|.+|.+++.+.. ..+|..+|++.+..-|+++
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9885 679999999999987 8999999999999999875
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=3e-09 Score=98.53 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~ 390 (437)
.-.+++.+......+......++|.+++..+++.++..|..... +...+--++.|+..-+++.+||+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHH
Confidence 34567777888888999999999999999999999998875432 3445667889999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
.++|.++|+++.+|..+|.+|+.-..|+.|+.+|++|++++++|..
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 9999999999999999999999999999999999999999999864
No 67
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.4e-09 Score=108.63 Aligned_cols=120 Identities=18% Similarity=0.106 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---------CChHHHHH-HH---------hhhHHHhhhHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FVDDEQKL-VK---------SLRVSCWLNSAAC 376 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---------~~~~~~~~-~~---------~~~~~~~~nla~~ 376 (437)
...+.+...||.|--+++++.|+.+|++|+.++|...- ...++.+. .. .-.-.+|+-+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 44679999999999999999999999999999885321 01122211 11 1113578999999
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|+++++++.|.-+|++|++++|.|.-.+...|.++.++|+.++|+..|++|+.+||.|+
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999886
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1e-09 Score=109.56 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=51.6
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH----------------------------------NVKALYRRAQAYME 413 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~----------------------------------~~~a~~~~g~~~~~ 413 (437)
..|+.+|.||..+++++.||++|++|+++||+ +-.|||-+|.+|++
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 44666666666666666666666666666664 44778999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCCC
Q 013755 414 IADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 414 lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+++++.|.-+|++|++++|.|.
T Consensus 502 qek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred cchhhHHHHHHHhhhcCCccch
Confidence 9999999999999999999874
No 69
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.92 E-value=5.8e-09 Score=91.59 Aligned_cols=62 Identities=19% Similarity=0.423 Sum_probs=52.4
Q ss_pred EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (437)
Q Consensus 214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~ 277 (437)
++|+.++.+|++||++ ....|+.|.+|.++++|+|+.+|.+|.+|++..|.|+|+.|||...
T Consensus 11 l~Y~l~~~dG~v~dst--~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 11 LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred EEEEEEeCCCCEEEec--CCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 3555555566667766 3478999999999999999999999999999999999999999754
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=6.9e-09 Score=108.99 Aligned_cols=107 Identities=7% Similarity=0.020 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
+..+..++..|....+.|.+++|...+..++.+.|+.. .++.+++.++.+++++++|+..++++|
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------------~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------------EAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 34477788889999999999999999999999988753 678888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
..+|+++.+++.+|.++.++|+|++|++.|++++..+|++++
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 888888888888888888888888888888888887776553
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.89 E-value=2.8e-08 Score=90.29 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHH-H------HHHHhhhHHHhhhHHHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDE-Q------KLVKSLRVSCWLNSAACCL 378 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-~------~~~~~~~~~~~~nla~~~~ 378 (437)
+..+...|..++..|+|++|+..|++++...|..... +.++ . .........++.++|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 4555566666666666666666666666655432100 0000 0 0000001134455555555
Q ss_pred hccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 379 KLKDYQGAIELCSKVLDCD--CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 379 ~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+|++++|+..+.+++... +.....++.+|.++..+|++++|...|++++..+|++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555432 3334455555555555566666666666666555554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=1.7e-08 Score=89.06 Aligned_cols=100 Identities=21% Similarity=0.221 Sum_probs=75.6
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+.+-|..+..+|+|++|...|.+|+.. |.-. .....+-|+|.|.+++|+++.|..+++++|+++|+
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALAD-PAYG------------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCC------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 3444444455555555555555555442 2111 12456889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
++.++..++..+++.|+|-.|...+++...--+
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 999999999999999999999999998765433
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.88 E-value=2.4e-08 Score=90.64 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=82.1
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...|..++..|++++|+..|++++...+.. .....+.++|.++..+|++++|+..+.+++..+|+
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34455566666666666666666666532111 12356888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+..+++.+|.++..+|++++|+..+++++.+.|.++
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999977654
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=1.3e-08 Score=91.25 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=83.4
Q ss_pred hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (437)
Q Consensus 330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 409 (437)
..++.++++..++++++..|.+. ..|.++|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~---------------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 36777889999999999988764 679999999999999999999999999999999999999999
Q ss_pred HH-HHhcc--HHHHHHHHHHHHHhCCCCCC
Q 013755 410 AY-MEIAD--LILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 410 ~~-~~lg~--~~~A~~~~~~al~l~P~n~~ 436 (437)
++ ...|+ +++|++.++++++++|+|.+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 85 67787 59999999999999999865
No 75
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.1e-09 Score=95.16 Aligned_cols=253 Identities=17% Similarity=0.179 Sum_probs=158.7
Q ss_pred cCCCeEEEEEEccCCCCCC--CCCCEEEEEEEEEEc--CCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEE
Q 013755 44 GNSGIKKKLLKNGVDWDTP--EFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119 (437)
Q Consensus 44 ~~~g~~~~~~~~G~g~~~~--~~gd~V~v~y~~~~~--~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~ 119 (437)
.-.||+++++..|.| +-| ..|..|++||..... .++++|+|+.-|.|..+++|...-.+-|+..|..|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 456999999999999 554 689999999987775 467999999999999999999999999999999999999999
Q ss_pred EEEecCCC----CCC----------CCCC-----------------------CC-CCCCCCcEEEEEEEeceeeeeccCC
Q 013755 120 FTFTLPSE----LRF----------GVEG-----------------------RD-SLPPNSVVQFEVELVSWITVVDLSK 161 (437)
Q Consensus 120 ~~~~ip~~----~ay----------g~~~-----------------------~~-~i~~~~~~~f~v~l~~~~~~~d~~~ 161 (437)
| +|.-- |.| |... -. ....-++++|.++|..+..+.+...
T Consensus 87 F--~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~ 164 (329)
T KOG0545|consen 87 F--WCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR 164 (329)
T ss_pred h--hhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence 8 54321 111 1110 00 0111367888888888754433221
Q ss_pred CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEe-cCccEEeecCCCCCCCeEEE
Q 013755 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL-EDGTVFEKKGYDGEQPLEFI 240 (437)
Q Consensus 162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~-~~g~~fd~~~~~~~~p~~f~ 240 (437)
+ .|....+ .. ....+ .+ ..|.. -|.
T Consensus 165 e------------~Wqlsdd-eK--------------mkav~---------------~l~q~GN~------------lfk 190 (329)
T KOG0545|consen 165 E------------TWQLSDD-EK--------------MKAVP---------------VLHQEGNR------------LFK 190 (329)
T ss_pred c------------cccCCch-Hh--------------hhhhH---------------HHHHhhhh------------hhh
Confidence 1 0100000 00 00000 00 00000 011
Q ss_pred cCCC-CcchHHHHH---hcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCCCCCCh-HHHH
Q 013755 241 TDEE-QVIAGLDRV---AATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN-QGKI 315 (437)
Q Consensus 241 lg~~-~~~~gl~~~---l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~-~~~~ 315 (437)
.|.. ........| |..+...| .+|+-.. +-..
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkE-------------------------------------------kP~e~eW~eLdk 227 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKE-------------------------------------------KPGEPEWLELDK 227 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhcc-------------------------------------------CCCChHHHHHHH
Confidence 1110 111111111 11111100 1111100 1111
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
.....+.+....++..++|-+++++....|...|.+ ..+|+.+|.++...=+.++|..++.++|+
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---------------VKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 233456678888999999999999999999988765 47899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH
Q 013755 396 CDCHNVKALYRRAQAY 411 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~ 411 (437)
++|.-..+-.+--.++
T Consensus 293 ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 293 LDPSLASVVSRELRLL 308 (329)
T ss_pred cChhhHHHHHHHHHHH
Confidence 9998877665544443
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=5.7e-09 Score=77.49 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=60.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|...|++.++|++|+.++++++.++|+++.+++.+|.++..+|+|.+|+.+|++++++.|++++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3568899999999999999999999999999999999999999999999999999999998764
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=2e-08 Score=104.52 Aligned_cols=103 Identities=9% Similarity=-0.109 Sum_probs=90.6
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..+...|..+...|++++|+..|++|+++.|++. .+++++|.++..+|++++|+..++++++++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34456678889999999999999999999998764 668999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD-PQNR 435 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~ 435 (437)
|.++.+++.++.+++.+|++++|+..+++++... |+++
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~ 441 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP 441 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH
Confidence 9998888888888888999999999999999875 5554
No 78
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.83 E-value=2.3e-08 Score=109.03 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=78.5
Q ss_pred hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (437)
Q Consensus 330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 409 (437)
..|++++|+..|++++...|+ ..+++++|.++.++|++++|+..++++++++|+++.+++++|.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 335666666666666655542 3678999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 410 AYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 410 ~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++..+|++++|+..|+++++++|++++
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999864
No 79
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9.8e-09 Score=101.92 Aligned_cols=90 Identities=23% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCCC
Q 013755 62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN 141 (437)
Q Consensus 62 ~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~~ 141 (437)
++.||.|+|+|+++. ||..|.+... ..+.|.||+|++||||+.+|.||+.|++..|++++|.+|.-+.. ++
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AG 228 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CC
Confidence 999999999999965 9999888655 45999999999999999999999999999998899998776665 67
Q ss_pred CcEEEEEEEeceeeeeccC
Q 013755 142 SVVQFEVELVSWITVVDLS 160 (437)
Q Consensus 142 ~~~~f~v~l~~~~~~~d~~ 160 (437)
.+..|.|+|..+....-+.
T Consensus 229 K~a~F~V~vkeVk~~elpE 247 (441)
T COG0544 229 KEATFKVKVKEVKKRELPE 247 (441)
T ss_pred CceEEEEEEEEEeecCCCC
Confidence 8899999999987655444
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.81 E-value=1e-08 Score=74.21 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=57.9
Q ss_pred HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
..|..+++.|+|++|+..|+++++..|.+ ..+++.+|.|+.++|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999998764 47899999999999999999999999999999985
No 81
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2e-08 Score=96.53 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=71.9
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a 403 (437)
.||-|--+++.++|+..|++||+++|... .+|.-+|.-|..+++-..|+..|++|++++|.+-+|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~---------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYL---------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchh---------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 46777778888899999999998887643 556677777777777777777777777777777777
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 404 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
||.+|++|.-|+.+.=|+-+|++|+++.|+|+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCch
Confidence 77777777777777777777777777777664
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=2.9e-08 Score=94.98 Aligned_cols=93 Identities=13% Similarity=-0.045 Sum_probs=82.2
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY 411 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~ 411 (437)
++.+.++..+.++|...+.++ ......|+++|.+|..+|++.+|+..|+++++++|+++.+|+.+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 466778888999887554332 123577999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCC
Q 013755 412 MEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 412 ~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
..+|++++|+..|+++++++|++.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999875
No 83
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=7.2e-08 Score=86.84 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=94.1
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+..+|...+..|+|..|+..++++....|.+. .+|+-+|.+|.+.|+++.|...|.+++++.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~---------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW---------------EAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh---------------hhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 34555699999999999999999999999999876 569999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
|+++.++.|+|..|+-.|+++.|...+..+...-+.|
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999998776654
No 84
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.78 E-value=5.7e-08 Score=102.93 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=49.8
Q ss_pred HHHhhHHHhCCcHHH----HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 322 KEEGNLLFKNGKYER----AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...|..++..|++++ |+..|++++...|.+. .++.++|.++.++|++++|+..++++++++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344555555555553 4555555555544321 334455555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
|+++.+++.+|.+|..+|++++|+..|++++..+|++
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5555555555555555555555555555555554443
No 85
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.78 E-value=4e-09 Score=97.90 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (437)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~ 389 (437)
..++.++++...+-.+..++..|.++.|+.+|..|+.+.|... .+|.+++.++++++++..|+.+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a---------------~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA---------------ILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh---------------hhcccccceeeeccCCchhhhh
Confidence 3567889999999999999999999999999999999988753 5689999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 390 CSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 390 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
|..|++++|+..+.|-.++.++..+|+|++|..+|..|++++-+
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999998743
No 86
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.3e-08 Score=94.30 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+...|..|...++-..|+..|++|++++|.+. .+|+-||++|.-++.+.-|+-+|++|+++.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy---------------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY---------------RAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH---------------HHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 34555678889999999999999999999998765 446666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
|++...|.-+|.||.++++.++|+.+|++|+...
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 6666666666666666666666666666665543
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=6.1e-08 Score=102.72 Aligned_cols=103 Identities=14% Similarity=0.014 Sum_probs=95.0
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..+...|..++..|++++|+..|++++...|.+. .++.++|.+|.++|++++|+..|+++++.+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------------YVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45677889999999999999999999999988753 568899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99998888899999999999999999999999999864
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=1.5e-07 Score=86.78 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc--------cCHHHHHHHH
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--------KDYQGAIELC 390 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------~~~~~Ai~~~ 390 (437)
..+...|..+++.+++++|+..|+++++..|++... ..+++++|.+++++ +++++|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 456888999999999999999999999999876532 24678899999876 8999999999
Q ss_pred HHHHHhCCCCHHHH-----------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 391 SKVLDCDCHNVKAL-----------------YRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 391 ~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++++..+|++..++ +.+|..|+.+|++.+|+..|+++++..|+++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 99999999986442 4678899999999999999999999988765
No 89
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.75 E-value=8.9e-08 Score=108.06 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=96.6
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHH-HHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK-LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
...+...|..+++.|++++|+..|+++++..|..... ..+. .+......++.++|.++.+.|++++|+..|++++++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~--~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR--DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch--hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999988765421 1111 111122334567789999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+|++..+++.+|.+|..+|++++|++.|+++++++|++..
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999998753
No 90
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.74 E-value=2.6e-08 Score=74.96 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=58.0
Q ss_pred hhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD-------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
..+.+++|+|.+|..+|+|++|+.+|++++++. |..+.+++++|.++..+|++++|+..+++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 346789999999999999999999999999762 1225789999999999999999999999999873
No 91
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=1.2e-07 Score=91.16 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=91.2
Q ss_pred HHHHHHHHhhHHHhCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCH--HHHHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY--QGAIELCSKV 393 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~--~~Ai~~~~~a 393 (437)
....+..+|..+...+ ++++|+..+.+++..+|.+. .+|++++.++.++++. .+++.+++++
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 3445667777777777 57899999999998887754 5699999998888874 7889999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 394 LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 394 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|+.+|+|..||+.++.++..+++|++|++++.++|+++|+|..
T Consensus 135 l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 135 LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 9999999999999999999999999999999999999999864
No 92
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=1.4e-07 Score=85.97 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=96.4
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+++.|..+++.|+|..|...|..-++..|+.... ..+++.||.|++.+|+|..|...|..+.+-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 338999999999999999999999999999986533 57899999999999999999999999999988
Q ss_pred CC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 399 HN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 399 ~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++ +.+++.+|.|...+|+.++|...|+++++--|+..
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 77 57799999999999999999999999999999865
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=9.7e-08 Score=100.46 Aligned_cols=103 Identities=10% Similarity=-0.108 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.+........+..+++.+++++|+..+++++...|++. ..++++|.++.++|+|++|+..|++++
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---------------~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---------------REILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45567788899999999999999999999999998764 679999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
..+|++++++..+|.++..+|+.++|...|++|+++..
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999998753
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=4.9e-08 Score=81.71 Aligned_cols=83 Identities=16% Similarity=0.051 Sum_probs=75.1
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 013755 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI 418 (437)
Q Consensus 339 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~ 418 (437)
..|++++...|.+ ..+.+.+|.++++.+++++|+..+++++..+|.++.+++++|.++..+|+++
T Consensus 4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 3577888877654 2558899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 013755 419 LAELDIKKAIEADPQNRN 436 (437)
Q Consensus 419 ~A~~~~~~al~l~P~n~~ 436 (437)
+|+..|++++.++|.+.+
T Consensus 69 ~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPR 86 (135)
T ss_pred HHHHHHHHHHhcCCCChH
Confidence 999999999999998754
No 95
>PRK01490 tig trigger factor; Provisional
Probab=98.70 E-value=5.8e-08 Score=97.97 Aligned_cols=91 Identities=25% Similarity=0.491 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP 139 (437)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~ 139 (437)
+.++.||.|+|+|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++|++.+|.+ |+... -
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~--~~~~~----l 226 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPED--YHAED----L 226 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccc--ccccc----C
Confidence 35899999999999997 8999887644 67999999999999999999999999999995555554 43322 1
Q ss_pred CCCcEEEEEEEeceeeeecc
Q 013755 140 PNSVVQFEVELVSWITVVDL 159 (437)
Q Consensus 140 ~~~~~~f~v~l~~~~~~~d~ 159 (437)
++.+..|.|++.++....-+
T Consensus 227 agk~~~f~v~v~~V~~~~~p 246 (435)
T PRK01490 227 AGKEATFKVTVKEVKEKELP 246 (435)
T ss_pred CCCeEEEEEEEEEeccCCCC
Confidence 67889999999998765433
No 96
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.69 E-value=5.7e-08 Score=97.24 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP 139 (437)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~ 139 (437)
+.++.||.|+|+|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++| .++....|+..+.
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEEL---- 215 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCcccC----
Confidence 46899999999999986 8999988653 7899999999999999999999999999999 6655555664432
Q ss_pred CCCcEEEEEEEeceeeeeccCCCccceEE
Q 013755 140 PNSVVQFEVELVSWITVVDLSKDGGIVKK 168 (437)
Q Consensus 140 ~~~~~~f~v~l~~~~~~~d~~~dg~v~k~ 168 (437)
++.+..|.|++.++....-+.=|..+.+.
T Consensus 216 ~gk~~~f~v~i~~I~~~~~peldDefak~ 244 (408)
T TIGR00115 216 AGKEATFKVTVKEVKEKELPELDDEFAKE 244 (408)
T ss_pred CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 67889999999998765433333333333
No 97
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.69 E-value=5.7e-08 Score=92.20 Aligned_cols=114 Identities=23% Similarity=0.155 Sum_probs=69.2
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-----------Ch-HH----HHHHH---hhhHHHhhhHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VD-DE----QKLVK---SLRVSCWLNSAACC 377 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~-~~----~~~~~---~~~~~~~~nla~~~ 377 (437)
....+...|..+.+.|++++|+..|++|++..|.+... .. ++ ..... .-...++..+|.+|
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 34567788999999999999999999999999975431 11 11 01111 11234567788888
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
..+|++++|+.++++++..+|+++..+..+|.++...|++++|...++++++.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888888888888888888888888888888888888753
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.68 E-value=3.4e-07 Score=82.48 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=88.8
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
....++..|..++..|+|.+|+..|++.+...|..+- ...+.+.+|.++++.++|.+|+..+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999887642 3577899999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCCC
Q 013755 397 DCHNV---KALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 397 ~p~~~---~a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n~ 435 (437)
.|+++ .++|.+|.+++.+.+ ..+|+..|+..+..-|+++
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 99875 689999999877643 4589999999999999875
No 99
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=6.2e-08 Score=94.46 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA---LYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
..+++|+|.+|+++|+|++|+..|++||+++|++..+ ||++|.||..+|++++|+++|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5779999999999999999999999999999999865 999999999999999999999999997
No 100
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1e-08 Score=95.69 Aligned_cols=126 Identities=33% Similarity=0.354 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh---HH-HHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~nla~~~~~~~~~~~A 386 (437)
....+...+..++.|+..|+.++|..|...|.++++.....+.... ++ +..+..++..++.|++.|-++.+.+..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 4456778888999999999999999999999999998763221111 11 3457788888999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 387 IELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 387 i~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+..+..+++.++...++||+++.+++.+.++++|+++++.|....|++.+
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 99999999999999999999999999999999999999999999998753
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.67 E-value=1.3e-07 Score=102.07 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=95.1
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..+...|..+...|++++|+..|++++...|.+. .++.+++.++...+++++|+..++++++.+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND---------------DYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34478889999999999999999999999988754 557899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|+++. ++.+|.++...|++++|+..|+++++++|++++
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999 999999999999999999999999999999864
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=1.7e-07 Score=95.31 Aligned_cols=103 Identities=22% Similarity=0.150 Sum_probs=95.4
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH--HHHHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE--LCSKVLD 395 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~--~~~~al~ 395 (437)
+..++..|..+..+|++.+|.+.|..|+.++|++. .+...+|.|+.+.|+-.-|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------------~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------------PSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 45668889999999999999999999999999875 557889999999999888887 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+||.|++|||.+|.++..+|+.++|.++|..|+++++.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999987
No 103
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.67 E-value=2.3e-07 Score=104.80 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=97.2
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC-----------hHHH-H---------------HHHhhhHHHh
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-----------DDEQ-K---------------LVKSLRVSCW 370 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----------~~~~-~---------------~~~~~~~~~~ 370 (437)
...+...|..++..|++++|+..|+++++..|.+.... .++. . ....+....+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 34567789999999999999999999999887643210 0000 0 0112224456
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
.++|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++++
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 778999999999999999999999999999999999999999999999999999999999998864
No 104
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.66 E-value=2.8e-07 Score=95.29 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..+..+||.+|..|++++|+..+.++++.+|... .+|..||.||.++|+.++|+...-.|-.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---------------~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---------------IAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---------------hhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3478899999999999999999999999999988764 3355555555555555444444444444
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
++|++...|.+++.....+|++++|+-+|.+|++++|.|
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 444444444444444444444444444444444444443
No 105
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.66 E-value=2.4e-07 Score=100.08 Aligned_cols=104 Identities=9% Similarity=0.007 Sum_probs=97.1
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+...|..+...|++++|+..+++++...|.+. .+++++|.++..+|++++|+..++++++++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 44566788899999999999999999999988764 679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|++..+++.+|.+++.+++|++|+..++++++..|+|+.
T Consensus 424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999864
No 106
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.65 E-value=5.7e-07 Score=73.21 Aligned_cols=99 Identities=18% Similarity=0.014 Sum_probs=86.6
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+++.|..+-..|+.++|+.+|++++...... ..+..++.++|.++..+|++++|+..+++++...|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 357889999999999999999999999864332 12456889999999999999999999999999988
Q ss_pred C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 399 H---NVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 399 ~---~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
+ +......++.++..+|++++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 778888899999999999999999988774
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.65 E-value=3.5e-08 Score=72.09 Aligned_cols=59 Identities=34% Similarity=0.384 Sum_probs=55.1
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+++.|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 35789999999999999999999999999999999999999999999999999999864
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=3.1e-07 Score=78.07 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=82.1
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
.......|..++..|+|++|+..|++++...++. .+...+.++||.+++.+++|++|+..++. +.-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 4556778999999999999999999999865332 23456788999999999999999999966 3334
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
+-.+.++..+|.+|..+|++++|+..|++||
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4456788999999999999999999999985
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.64 E-value=6.9e-08 Score=70.48 Aligned_cols=68 Identities=31% Similarity=0.330 Sum_probs=60.2
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~ 407 (437)
+++.|+|++|+..|++++...|.+. .+++.+|.||+++|++++|...+++++..+|+++..+..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP---------------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH---------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4788999999999999999998764 6788999999999999999999999999999988887777
Q ss_pred HHH
Q 013755 408 AQA 410 (437)
Q Consensus 408 g~~ 410 (437)
+++
T Consensus 66 a~i 68 (68)
T PF14559_consen 66 AQI 68 (68)
T ss_dssp HHH
T ss_pred hcC
Confidence 653
No 110
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=7.5e-08 Score=84.08 Aligned_cols=132 Identities=19% Similarity=0.129 Sum_probs=109.6
Q ss_pred CCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhh
Q 013755 286 PSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSL 365 (437)
Q Consensus 286 p~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~ 365 (437)
|-+..+.-+|.|..+.+....-.|+.+ +++..++++|+.|=..|-+..|.-.|.++|.+.|..+
T Consensus 36 ~~qp~lqqEV~iarlsqlL~~~~l~~e---eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------------- 99 (297)
T COG4785 36 PLQPTLQQEVILARMSQILASRALTDE---ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP------------- 99 (297)
T ss_pred cCCccHHHHHHHHHHHHHHHhccCChH---HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH-------------
Confidence 333333334444444333333334333 4588899999999999999999999999999988754
Q ss_pred hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+++-+|.-+...|+|+.|.+.|+.++++||.+.-|+.+||.+++.-|+|.-|.+++.+-.+-||++|
T Consensus 100 --~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 100 --EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred --HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 77999999999999999999999999999999999999999999999999999999999999999987
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.64 E-value=5.9e-07 Score=83.10 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=91.3
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..++..|..++..|+|++|+..|++++...|..+ ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 55678899999999999999999999999988653 234667899999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHHhcc------------------HHHHHHHHHHHHHhCCCCC
Q 013755 398 CHN---VKALYRRAQAYMEIAD------------------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 398 p~~---~~a~~~~g~~~~~lg~------------------~~~A~~~~~~al~l~P~n~ 435 (437)
|++ +.++|.+|.++..++. -.+|+..|++.++.-|+.+
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 987 4779999999766641 3578899999999999864
No 112
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.63 E-value=3.9e-07 Score=90.52 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
+...+..+.+.|+|++|+..|++++...|.... ......++++|.++.+++++++|+..|+++++.+|++
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 334444455555555555555555444332110 0112345667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
..+++.+|.+|..+|++++|++.|+++++.+|.+
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 7777777777777777777777777777776654
No 113
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.59 E-value=4.5e-07 Score=99.20 Aligned_cols=104 Identities=27% Similarity=0.258 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..+...|..++..|+|++|+..|++++...|... .+++.+|.+++..|++++|+..++++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL---------------YAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------hhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4466778899999999999999999999998877643 3355556666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+|.+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 666666666666666666666666666666666665554
No 114
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=3e-07 Score=68.11 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=63.3
Q ss_pred hhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH
Q 013755 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKAL 404 (437)
Q Consensus 325 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~ 404 (437)
...+++.++|++|+..+++++.+.|.+. .++..+|.|+.++|+|.+|+..++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP---------------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc---------------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4678999999999999999999999865 5689999999999999999999999999999998887
Q ss_pred HHHHH
Q 013755 405 YRRAQ 409 (437)
Q Consensus 405 ~~~g~ 409 (437)
..++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 66554
No 115
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.58 E-value=6.6e-07 Score=88.93 Aligned_cols=113 Identities=15% Similarity=0.050 Sum_probs=61.2
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------C-hHHH---HHHH----hhhHHHhhhHHHHHHhc
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------V-DDEQ---KLVK----SLRVSCWLNSAACCLKL 380 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~~~~---~~~~----~~~~~~~~nla~~~~~~ 380 (437)
+...|..+++.+++++|+..|+++++..|..... . ++.. .... .....++..++.+|.++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 4456666677777777777777777665542210 0 0000 0000 00112345556666666
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
|++++|+..++++++.+|+... +..++.++...|++++|+..|+++++..|++
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 6666666666666666665433 3556666666666666666666666666654
No 116
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-07 Score=90.15 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+.+++-+|..++...+.+.|+.+|+++|.+.|..... ...-...-....+-+.|.-.++.|+|..|.+.|..+|.
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 446778889999999999999999999999998875421 11111122334567889999999999999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 396 CDCHN----VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 396 ~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
++|+| ++.|+++|.++..+|+..+|+.+++.|+.|||.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 99987 577999999999999999999999999999985
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=9.8e-08 Score=91.48 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=92.2
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+.+.||..|..|++++|...|++||.-+... ..+++|+|+.+..+|+.++|+++|-+.-.+--
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 345668899999999999999999999865433 47799999999999999999999999877777
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+++..++.++.+|..+.+..+|+++|.++..+-|+++.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 89999999999999999999999999999999999873
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=4.4e-07 Score=76.54 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
....+.+|..++..|++++|...|+.+..+||.++..|+++|.|+..+|+|.+|+..|.+|+.++|+|+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 3557889999999999999999999999999999999999999999999999999999999999999975
No 119
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.54 E-value=5.7e-07 Score=98.36 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...|..+...|++++|+..|++++...|.+ ..++.+++..+.+.++ .+|+..+++++++.|+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---------------AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 44555666666777777777777776665543 2557777888888888 7788888888888888
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++..+..+|.++..+|++++|+..|+++++++|.++
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 888888888888888888888888888888888765
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.53 E-value=4.4e-07 Score=93.81 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.....-+.+.+..+...|+|..|+.+|..+....+... .-+|+++|.||..++.+++|+.+|.++|
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--------------~~vw~~~a~c~~~l~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--------------AFVWYKLARCYMELGEYEEAIEFYEKVL 476 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--------------hhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35677889999999999999999999999887654432 4679999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
.++|++..+...++.++..+|++++|++.+.+...-|+
T Consensus 477 ~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 477 ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999988764443
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=84.97 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=61.3
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
+-+-|.-+++.++|.+|+..|++||+++|+|+-.|.+||.+|.+||+|+.|+++++.|+.+||+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y 148 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY 148 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence 33678888999999999999999999999999999999999999999999999999999999964
No 122
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.2e-06 Score=80.90 Aligned_cols=106 Identities=20% Similarity=0.101 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc---cCHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---KDYQGAIELCSK 392 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---~~~~~Ai~~~~~ 392 (437)
..++.+.-.|..|+..+++..|...|.+|+++.|+++ .++.-+|.+++.+ ..-.++...+++
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---------------EILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3355677789999999999999999999999998865 4566777766554 346789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+|.+||.|+.+++.+|..++..|+|.+|+..++..|.+.|.+..
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999997753
No 123
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=6.3e-07 Score=67.33 Aligned_cols=74 Identities=26% Similarity=0.335 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..+...|..++..|+|++|+..|++|+.+...... .....+.++.|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45778899999999999999999999999998533321 1233478899999999999999999999999998
Q ss_pred hC
Q 013755 396 CD 397 (437)
Q Consensus 396 ~~ 397 (437)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 124
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=7.1e-07 Score=85.74 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=85.1
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDCDCHNVKALYR 406 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~~p~~~~a~~~ 406 (437)
+...+++++|+..+.++|.++|.+. .+|++++.++..++ ++++|+..++++++.+|++..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 5667899999999999999998764 77999999999998 6899999999999999999999999
Q ss_pred HHHHHHHhccH--HHHHHHHHHHHHhCCCCC
Q 013755 407 RAQAYMEIADL--ILAELDIKKAIEADPQNR 435 (437)
Q Consensus 407 ~g~~~~~lg~~--~~A~~~~~~al~l~P~n~ 435 (437)
++.++..+++. ++++..++++++++|+|-
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence 99999999974 788999999999999874
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.47 E-value=4.7e-07 Score=79.03 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=80.9
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--- 400 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--- 400 (437)
..+.+|-.+.|..+...+...++..+. .....+++++|.++..+++|++|+..|++++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 445667777777777777655543222 2246789999999999999999999999999997763
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.+++++|.+|..+|++++|+..|++++.++|.+.
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 45899999999999999999999999999998764
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=5.2e-06 Score=84.94 Aligned_cols=117 Identities=12% Similarity=0.037 Sum_probs=90.8
Q ss_pred HHHHHHHhhHHHhCCc---HHHHHHHHHHHHHhhccCCC--------------CC---hHHHHHHHh------------h
Q 013755 318 AGRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGS--------------FV---DDEQKLVKS------------L 365 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~--------------~~---~~~~~~~~~------------~ 365 (437)
+-.++.+|..++.... +.+|+.+|++|++++|+... .. ...+..+.. .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3345667777766544 88999999999999887421 11 111111111 1
Q ss_pred hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
...+|.-+|..+...|++++|...+++|+.++| +..+|+.+|.++...|++++|++.|++|+.++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 124566778888889999999999999999999 588999999999999999999999999999999876
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.43 E-value=1.4e-06 Score=85.53 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=76.9
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+..+|..++..|+|++|+..+++|+.+.|... .+|+++|.+|+++|+|++|+.+|+++++++
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLA---------------KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 46778999999999999999999999999988653 679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 013755 398 CHNVKALYRRAQAYMEIAD 416 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~ 416 (437)
|++..+...++.|...+.+
T Consensus 101 P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 101 PGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999877744
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.42 E-value=1.1e-06 Score=66.97 Aligned_cols=67 Identities=37% Similarity=0.474 Sum_probs=63.8
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+++++|.++..++++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++.+.|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4789999999999999999999999999999999999999999999999999999999999998764
No 129
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.42 E-value=1.7e-06 Score=74.07 Aligned_cols=87 Identities=28% Similarity=0.277 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc----------cCHHHHHHHHHHHHHhCCCCHHH
Q 013755 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----------KDYQGAIELCSKVLDCDCHNVKA 403 (437)
Q Consensus 334 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~a 403 (437)
|+.|.+.|+.....+|.+. ..++|=|.+++.+ .-+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~nP~Da---------------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA---------------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H---------------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhH---------------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 6778888888888888763 3344444444433 44788999999999999999999
Q ss_pred HHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCCC
Q 013755 404 LYRRAQAYMEIAD-----------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 404 ~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n~ 435 (437)
++++|.+|..++. |++|..+|++|..++|+|.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 9999999988876 8999999999999999984
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=1.8e-06 Score=78.00 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=84.0
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
...++.++..|+-+.++....+++...+.+. .++.-+|..++..|+|..|+..+.++..++|++.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDR---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccH---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 4466666777777777776666665555442 3345589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++|.-+|.+|.++|++++|...|.+++++.|+++.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~ 169 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS 169 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence 99999999999999999999999999999999874
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=2.1e-06 Score=69.72 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=63.7
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
..++++|..+.+++++++|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 458899999999999999999999999999877 57999999999999999999999999999999874
No 132
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.39 E-value=2.1e-06 Score=92.14 Aligned_cols=119 Identities=10% Similarity=0.022 Sum_probs=91.0
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-C------------hHHHHHHHh------hhHHHhhhHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-V------------DDEQKLVKS------LRVSCWLNSAACC 377 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~------------~~~~~~~~~------~~~~~~~nla~~~ 377 (437)
.+...+.++...++.|+|+.|+..|+++++..|..... . ++....++. .....+..+|.+|
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45578899999999999999999999999999886311 0 011111111 1122333446788
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
..+|+|++|+..|+++++.+|+++.+++.++.++..+++.++|+..++++..++|.+.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 8889999999999999999999999998888889999999999999999988888754
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.3e-06 Score=91.13 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=90.5
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..+...++.+|-.|+|..+..++..|+..... ..+.+..++++|.+|..+|+|++|..+|.+++..+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 345556777888888888888888888776422 23456779999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 398 CHN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 398 p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|++ .-+++.+|+.|...|+++.|+.+|++.++..|+|.+
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 998 888999999999999999999999999999999864
No 134
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=8.5e-07 Score=86.71 Aligned_cols=109 Identities=23% Similarity=0.120 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc---cCHHHHHH
Q 013755 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---KDYQGAIE 388 (437)
Q Consensus 312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---~~~~~Ai~ 388 (437)
-+..+.++..+.+||..|..+....|+..|.+++...|.. ..+|.|+|.++++. ++.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence 4667889999999999999999999999999999988764 46789999998884 67889999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+|..|++++|...+|+|+++.++..++++.+|+++...+....|.+.
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 99999999999999999999999999999999999887777777553
No 135
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.37 E-value=5.7e-06 Score=81.12 Aligned_cols=118 Identities=12% Similarity=-0.069 Sum_probs=93.7
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-------------Ch--HHHHH-H------HhhhHHHhhhHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VD--DEQKL-V------KSLRVSCWLNSAA 375 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--~~~~~-~------~~~~~~~~~nla~ 375 (437)
.+....+|..++..|++++|+..+++++...|.+... .. ..... + ......++.++|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 3445567889999999999999999999988765411 00 00001 1 1111235567888
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++..+|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++.+.|.++
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 999999999999999999999999999999999999999999999999999999987543
No 136
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.37 E-value=4.4e-06 Score=84.27 Aligned_cols=110 Identities=21% Similarity=0.160 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
...+..+.+.|..|.+.|+|++|..+|++|+++.......+ .......+.|++..+..++++++|+.++.+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 46678889999999999999999999999999976522221 22345778999999999999999999999999
Q ss_pred HhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 395 DCD--------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 395 ~~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
++- +.-++.+.++|.+|+.+|+|++|.+.|++|+.+.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 762 2336889999999999999999999999999875
No 137
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=4.9e-06 Score=77.16 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=91.5
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
.+.|..|++.|-+.+|...++.+|...|. ...+.-|+.+|.+..+...|+..+.+.|+..|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 46799999999999999999999988664 35578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
..+..+|.++..++++++|++.|+.+++++|.|-++
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence 999999999999999999999999999999998764
No 138
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=6.1e-06 Score=80.92 Aligned_cols=100 Identities=16% Similarity=0.033 Sum_probs=87.5
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+...|..+...|++++|+..|++++...|.+. .++..+|.++...|++++|+.++++++...
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 44555778899999999999999999999988764 568899999999999999999999999998
Q ss_pred CCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 398 CHNV----KALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 398 p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
|.++ ..++.+|.++..+|++++|+..|++++...|
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7443 3567899999999999999999999987666
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=7.1e-06 Score=80.08 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
.....+..+..++..|+++.|...++..+...|+++ ..+.-++.++++.++..+|++.+++++.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 344556666667777777777777777666666543 23344556666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+|+..-..+++|++|++.|++.+|+..++..+.-+|+|+
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 666666666666666666666666666666666666665
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.28 E-value=4.9e-06 Score=81.42 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
.....+..+.+.|..|++.|+|++|+..|++||++.|++... ..+|+|+|.||.++|++++|+.++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344568889999999999999999999999999999876411 24699999999999999999999999
Q ss_pred HHHhC
Q 013755 393 VLDCD 397 (437)
Q Consensus 393 al~~~ 397 (437)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99983
No 141
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.27 E-value=4.5e-05 Score=64.71 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=90.5
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-------CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~ 389 (437)
....+...|......++...++..+++++.+.....- .-......+......++..++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4556667788888899999999999999998654321 112344667778888899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 390 CSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 390 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
|++++..+|.+..++..+-.+|..+|++.+|++.|+++..
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
No 142
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.27 E-value=6.5e-06 Score=83.06 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
.........|..|+.+|+|+.|+..|++|++......... .........++|..|..+++|.+|+..|++||.
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445556699999999999999999999999864332211 122234455799999999999999999999997
Q ss_pred h--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 396 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+ +|.-+-++.++|.+|...|+|++|..++++|+++-
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 6 34446789999999999999999999999999874
No 143
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.27 E-value=1.5e-06 Score=53.90 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777653
No 144
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=3.7e-06 Score=85.43 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=89.9
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
+.+..|...+.+++|++|..+++..++++|-. ...|+++|.|..++++++.|.++|.+++.++|+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 44555666778899999999999999998754 366999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
+..+|.+++.+|..+++-.+|...+++|++-+-+|
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999887544
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.26 E-value=4.8e-06 Score=72.92 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=64.0
Q ss_pred hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
...+++++|.++...|++++|+.+|++++.+.|+. ..+++++|.++..+|++++|+..|++++.+.|++.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 45678999999999999999999999999987753 47899999999999999999999999999999764
No 146
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=5.2e-06 Score=76.97 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=91.5
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
..+.+.+.|..++..++|+-++..|++|+....+.. ..+.+|+|+|.+....|++.-|.++++-+|..
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc------------hhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 345677888889999999999999999998765432 24688999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
|+++..+|.++|..-...|+.++|...+..|-.+.|+-
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99999999999999999999999999999999888864
No 147
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.2e-06 Score=82.12 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=80.2
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC-----
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC----- 398 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p----- 398 (437)
.|..|.+.+++..|.+.|.+|+.+.|.++ -++..+|.+.+..+.|.+|+.+++.+|+.-+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dp---------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDP---------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcc---------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 45556667777777777777777777765 4578899999999999999999999994321
Q ss_pred --CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 399 --HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 399 --~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
.....+.++|.+|.+++.|++|+..|+++|.+.|.|.+
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 23455899999999999999999999999999998864
No 148
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.20 E-value=5.7e-06 Score=78.51 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHHhhHHHhCCcHH---HHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 322 KEEGNLLFKNGKYE---RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 322 ~~~g~~~~~~g~~~---~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
.+....+....-+. +-.....-.-+.....+.. ..+...++.++..+|+++++...+.......|
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------------PDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 44444444444443 4445554444555555543 35566777778888888887777777777777
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.++..+..+|.+|..+|++++|+.+|+++++.+|+|+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 7777778888888888888888888888888888775
No 149
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=1.5e-06 Score=53.84 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Q 013755 389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422 (437)
Q Consensus 389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~ 422 (437)
+|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999973
No 150
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=1.3e-05 Score=74.41 Aligned_cols=116 Identities=19% Similarity=0.146 Sum_probs=83.1
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---------ChHHHHH---------------HHhhhHHHhhhH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------VDDEQKL---------------VKSLRVSCWLNS 373 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~---------------~~~~~~~~~~nl 373 (437)
...+.+.|..|+..|-|+.|...|....+........ ...+|++ ..-..+..|+.|
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 4555666666777776666666666554421100000 0011111 122345678888
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 374 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
|..+....++++|+....+|++.||+++.|-..+|.+++..|+|+.|++.++.+++.||+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 988989999999999999999999999999999999999999999999999999998875
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=1.6e-05 Score=77.73 Aligned_cols=96 Identities=24% Similarity=0.154 Sum_probs=83.0
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
+-..+..+++.++..+|++.+++++...|+.. .+.+|+|.+|++.|++.+|+...+..+..+|++
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 34467889999999999999999999998764 668999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+..|..+|++|..+|+-.+|...+-..+.+.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 9999999999888888766666655555443
No 152
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.2e-05 Score=84.02 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 393 (437)
....++.++..|..+...|+|++|...|.+++...++... -.++-+|+.|++.|+++.|+.+|+++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~--------------l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV--------------LPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc--------------ccccchhHHHHHhchHHHHHHHHHHH
Confidence 3456778999999999999999999999999999887632 34788999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCCCCC
Q 013755 394 LDCDCHNVKALYRRAQAYMEIA----DLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 394 l~~~p~~~~a~~~~g~~~~~lg----~~~~A~~~~~~al~l~P~n~~ 436 (437)
++..|++...+.-+|..|...+ .-+.|...+.++++..|.|.+
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 9999999999999999999886 678899999999999987754
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=1.3e-05 Score=78.66 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=83.3
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
..-.+..++..++-.+|++..+++|...|.+ ..++...|..+++.++++.|+..++++.++.|++
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3446777888889999999999999887765 3667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.++|+.++.||..+|+|++|+..++.+--+
T Consensus 268 f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 268 FETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999888765443
No 154
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.16 E-value=5e-06 Score=51.39 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
+++++.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567778888888888888888888888887775
No 155
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.12 E-value=1.8e-05 Score=85.10 Aligned_cols=102 Identities=5% Similarity=-0.076 Sum_probs=86.0
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+...|..+...|+|++|+..|+++++..|.++ .++.-++..|..++++++|+..+++++..+|
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~---------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNP---------------DLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 3445567888999999999999999999998874 4566778999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
.+... ..++.++..++++.+|+..|+++++++|+|.+
T Consensus 168 ~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 168 TVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred chHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 86554 44566666678887799999999999999864
No 156
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.11 E-value=4e-05 Score=73.38 Aligned_cols=115 Identities=11% Similarity=0.133 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---ChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---VDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~ 390 (437)
.-++.......|..+|++++|..|+-.|..||++...-.-. .......+..+..-+.-.|..||+++++.+.|+.+.
T Consensus 172 iDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 172 IDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 34566667788999999999999999999999987643211 112334455556667778999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
.+.+.++|.++.-+.+.|.|+..+.+|.+|-..+--|.
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987665543
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=2.6e-05 Score=74.10 Aligned_cols=111 Identities=24% Similarity=0.347 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 393 (437)
...+..+...|..|... +++++|+.+|++|+.+...... ......++.++|.++.++++|++|+..|+++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35567778888888888 9999999999999999765431 2334578889999999999999999999999
Q ss_pred HHhCCC------CH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 394 LDCDCH------NV-KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 394 l~~~p~------~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
....-+ ++ +.+++.+.|++.+|++..|...|++....+|.-
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 875322 13 346788889999999999999999999998854
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00011 Score=62.39 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
.+...+...+......+..+++..+...+.+.+.-.|... ....+.+.+|.+++..|++++|+..+++
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556677888888888899999999999999888877652 2356788899999999999999999999
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 393 VLDCDCHN---VKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 393 al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
++...|+. ..+.+++|.+++.+|+|++|+..++.
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99987655 46899999999999999999999966
No 159
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=4.5e-06 Score=51.66 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
.+|+++|.+|..+++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999974
No 160
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=2.7e-05 Score=77.43 Aligned_cols=97 Identities=24% Similarity=0.248 Sum_probs=90.9
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
+.+|..+++.|+..+|+-+|+.|+..+|.+ +.+|..||.++...++-..||..+.++|+++|+|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h---------------aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH---------------AEAWQKLGITQAENENEQNAISALRRCLELDPTNL 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH---------------HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence 568999999999999999999999998875 47899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
.|+..+|.+|...|.-.+|+..|++=+...|.
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999998877764
No 161
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=5.9e-05 Score=70.11 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 393 (437)
+++.++.+-+.+..+....++++|+..+.+|+..+|.+. .+-.-+|.+++..|+|++|++.++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv---------------RAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV---------------RASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce---------------ehhhhhhHHHHhccchHHHHHHHHHH
Confidence 456777888889999999999999999999999988764 44668999999999999999999999
Q ss_pred HHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 394 LDCDCHN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 394 l~~~p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
++.||.. +.++-.+..||..+|+.++.+..+.++.+..++.
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9999987 5788899999999999999999999999887653
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.05 E-value=3.9e-05 Score=72.82 Aligned_cols=107 Identities=25% Similarity=0.262 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-cCHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVL 394 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~Ai~~~~~al 394 (437)
..+..+.+.++. ++..++++|+.+|++|+.+......+ ...+.++.++|.+|... +++++|+.+|++|+
T Consensus 73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444443333 44447777777777777776443322 33467889999999998 99999999999999
Q ss_pred HhCC--CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 395 DCDC--HN----VKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 395 ~~~p--~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
++.. +. ...+.+.|.++..+++|++|+..|+++....-
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 8732 12 36678999999999999999999999987543
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=9.4e-06 Score=77.43 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
++..+...+-+.||.||-.|+|+.|+...+.-|.+.....+ +.-...++.|+|.||.-+|+|+.|+++|.+
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 44555666777889999999999999998888887654321 111236788999999999999999999998
Q ss_pred HHHhC----CC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 393 VLDCD----CH--NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 393 al~~~----p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
++.+. .. .+...|.+|.+|.-+.++++|+.++.+-|.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542 12 24567888999999999999999888877664
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=6.2e-05 Score=67.72 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=91.6
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh-------------HHHHHHHhh------hHHHhhhHHHHHHh
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-------------DEQKLVKSL------RVSCWLNSAACCLK 379 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------~~~~~~~~~------~~~~~~nla~~~~~ 379 (437)
...+-.|..+-..|.|++|++.|...|.-+|.+..+.. +..+.+.++ -..+|..+|..|+.
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34456777888889999999999998887776542211 111222211 14678999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCC
Q 013755 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA---DLILAELDIKKAIEADPQN 434 (437)
Q Consensus 380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~n 434 (437)
+++|++|.-++++++-+.|.++-.+-|+|..++-+| +++-|+++|.++++++|.|
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 999999999999999999999999999999998877 5778999999999999954
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=2.7e-05 Score=83.27 Aligned_cols=112 Identities=14% Similarity=0.003 Sum_probs=84.3
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC--------------------------h-HHHHHHHhhhH---
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV--------------------------D-DEQKLVKSLRV--- 367 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------------------------~-~~~~~~~~~~~--- 367 (437)
...+......+...+++++|+..+..++...|+...+- . ..+ .+-+...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i 109 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHH
Confidence 44555566666677777777777777777665533210 0 001 1111111
Q ss_pred -------HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 368 -------SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 368 -------~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
.+++.||.||-++|++++|...|+++|+++|+|+.++.++|..|... ++++|+.++++|+...
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999 9999999999998763
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.01 E-value=4.7e-05 Score=74.75 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHH---HhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc---------cCHHHHHHHHHHHHHhCCCC
Q 013755 333 KYERAGKKYNKAA---DCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---------KDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 333 ~~~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------~~~~~Ai~~~~~al~~~p~~ 400 (437)
..+.|+.+|.+|+ .++|.. +.+|.-+|.||+.. ..-.+|+...++|++++|.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~---------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK---------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc---------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3467788888888 444432 34455555554442 12344555555666666666
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.|++.+|.++...++++.|...|++|+.++|+.+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A 372 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA 372 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence 66666666666656666666666666666666543
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.00 E-value=1.4e-05 Score=52.79 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=39.0
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~ 410 (437)
.+++.+|.+|..+|++++|++.|+++++.+|+|+.+++.+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3578999999999999999999999999999999999988863
No 168
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=7.2e-05 Score=67.31 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+|+--+||+....-|+..+++..||..++.+|+.+|+|++|.-+|++++-+.|-|+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 44445555555555555666668899999999999999999999999999999875
No 169
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.99 E-value=4.8e-05 Score=76.31 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-----------ChH----------HHHHHHhhhH--HHhh
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VDD----------EQKLVKSLRV--SCWL 371 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~~----------~~~~~~~~~~--~~~~ 371 (437)
.+........|..+...|++++|+..++++++..|++... ..+ .+.+...... .++.
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 3456777888999999999999999999999988876521 110 1112222333 5566
Q ss_pred hHHHHHHhccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 372 NSAACCLKLKDYQGAIELCS--KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~--~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.+|..++++|+|++|.++++ ++++.+|++.. +..+|.++..+|+.++|.+.+++++.+
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888888888888888 57778886655 558888888888888888888888754
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=97.98 E-value=3.8e-05 Score=75.42 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY 411 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~ 411 (437)
..-.+|.++-.+|+++++.++ .++..+|.++...++++.|+..+++|+.++|+.+.++|..|..+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 345778888899999988775 67889999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCCC
Q 013755 412 MEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 412 ~~lg~~~~A~~~~~~al~l~P~n 434 (437)
...|+.++|++.+++|++++|.-
T Consensus 383 ~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 383 FHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHcCCHHHHHHHHHHHhccCchh
Confidence 99999999999999999999964
No 171
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.98 E-value=4.1e-05 Score=81.87 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=48.3
Q ss_pred hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.-.+.+++|+|..|... ++++|+.++.+|+.. +...++|.++.....+.+..+|.+-
T Consensus 147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 147 RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccc
Confidence 34467889999999999 999999999999887 6777789999999999998888764
No 172
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.89 E-value=0.00021 Score=71.67 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHHH----HHHHhh----hHHHhhh
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDEQ----KLVKSL----RVSCWLN 372 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~~----~~~~~~----~~~~~~n 372 (437)
.+...+.....+|...+..|+|+.|.+...++.+..|..... +.+.. ....+. ...+...
T Consensus 79 r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 79 RKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA 158 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence 455677788889999999999999999999988876542100 00000 010000 0112333
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
++..++..+++++|+..+++.++..|+++.++..++.++...|+|++|++.+.+.++...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 477777788888888888888888888888888888888888888888888888776643
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.87 E-value=2.8e-05 Score=47.93 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
.+++++|.+|+++|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999986
No 174
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.87 E-value=0.00084 Score=53.30 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=80.0
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh---
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC--- 396 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--- 396 (437)
.....|...+..|-|++|...|++|+......+. ++.-.-.-+-.-||--|+.++..+|+|++++...+++|..
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3445677788899999999999999998654332 1111222334567888999999999999999999999864
Q ss_pred ----CCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 397 ----DCHN----VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 397 ----~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
+.+. ..+.|++|.++..+|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3332 467799999999999999999999998764
No 175
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.87 E-value=0.00013 Score=72.82 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
.+..+...|++++|+..++++++.+|+++.++..++.+|...|+|++|++.+.+..+..+
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 366777777777777777777777777777777777777777777777766666665544
No 176
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.87 E-value=5.1e-05 Score=61.30 Aligned_cols=61 Identities=30% Similarity=0.188 Sum_probs=57.3
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
.-|.+....|+.+.|++.|.++|.+.|.++.+|.++++++...|+-++|++++++|+++.-
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 4577788899999999999999999999999999999999999999999999999999854
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=9.5e-05 Score=60.22 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=60.7
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+++++|.++-.+|+.++|+..|++++...... ..++..+|.+|..+|++++|+..+++++.-.|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 458899999999999999999999999975443 6899999999999999999999999999988873
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.86 E-value=0.00035 Score=63.50 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=91.4
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
-+..+++.|...++.|+|.+|++.|+......|..+-. -.+.+.++.++++.++|++|+...++-+.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999887776432 366789999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCCCCC
Q 013755 397 DCHNV---KALYRRAQAYMEIAD--------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 397 ~p~~~---~a~~~~g~~~~~lg~--------~~~A~~~~~~al~l~P~n~ 435 (437)
.|+++ -++|.+|.+++..=+ -.+|...|+..+.--|+.+
T Consensus 101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 99875 568999999775532 4678899999999999875
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.86 E-value=8e-05 Score=69.55 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=62.5
Q ss_pred HHhhhHHHHH-HhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 368 SCWLNSAACC-LKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 368 ~~~~nla~~~-~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
...++.|..+ ++.++|++|+..|++.+...|++ +.++|.+|.+|+.+|+|++|+..|+++++..|+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 4567888876 66799999999999999999998 589999999999999999999999999999998753
No 180
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.83 E-value=0.00013 Score=72.87 Aligned_cols=114 Identities=10% Similarity=-0.044 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC----------CC-h------HHHHHHHhhhHHHhhhHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS----------FV-D------DEQKLVKSLRVSCWLNSAACCL 378 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~----------~~-~------~~~~~~~~~~~~~~~nla~~~~ 378 (437)
+........|..+...|+.++|....+++++..++ +. -+ . +.+.+.......+++.+|..+.
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 44556677888999999999999999999984332 21 01 0 1122333333567888899999
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+.++|.+|..+++++++.+|++ ..+..++.++.++|+.++|.++|+++|.+.
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999875 446679999999999999999999998764
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.81 E-value=2.2e-05 Score=73.32 Aligned_cols=62 Identities=27% Similarity=0.280 Sum_probs=59.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
-..|..|+++|+|++||++|.+++..+|.|+-.+.+||.+|+++..|..|..++..|+.|+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 46789999999999999999999999999999999999999999999999999999999874
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=0.0001 Score=75.30 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---------CC----hHHHHHHHhhhHHHhhhHHHHHHhcc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FV----DDEQKLVKSLRVSCWLNSAACCLKLK 381 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---------~~----~~~~~~~~~~~~~~~~nla~~~~~~~ 381 (437)
.++...+-.....|...|+..+|...-.+-++. +.++. .+ +..++-.......+...+|......+
T Consensus 421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 421 FERLEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred HHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence 344555555666677788888888877777762 22221 11 12223333333444455555566679
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
+|.+|.++++..++++|-....||++|.|..++++++.|..+|.+++.++|+|.++
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999764
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.00014 Score=67.24 Aligned_cols=70 Identities=23% Similarity=0.168 Sum_probs=64.2
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
...++..|..+++.|+|++|+..|++++...|... .+.+.+|.+|+++++|++|+..|++.+++.|+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 34577899999999999999999999999999886 44699999999999999999999999999999986
No 184
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.76 E-value=4.8e-05 Score=46.93 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
++|+.+|.+|..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467777777777777777777777777777743
No 185
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0002 Score=68.67 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=90.7
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHH---------HHHHHhhhH----------HHhhhHHHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE---------QKLVKSLRV----------SCWLNSAACCL 378 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~---------~~~~~~~~~----------~~~~nla~~~~ 378 (437)
...+-..|..+|..|++.+|+-.|+++..++|+....-+.. .+....+.. .-|+--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 45567789999999999999999999999888754321110 011111111 11233344566
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
..++|..|+.+.+|++..+|++..+|...|.++..+++.++|+-.|+.|..+.|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 78999999999999999999999999999999999999999999999999998854
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.00038 Score=62.67 Aligned_cols=106 Identities=16% Similarity=0.090 Sum_probs=83.2
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-----------CHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGA 386 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----------~~~~A 386 (437)
.......|..+|+.++|..|+..|++.++..|..+.. ..+++.+|.|++++. ...+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 4566788999999999999999999999999987632 466777888766643 35689
Q ss_pred HHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 387 IELCSKVLDCDCHNVKA-----------------LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 387 i~~~~~al~~~p~~~~a-----------------~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+..|+..+...|++..+ -+..|.-|++.|.|..|+.-++.+++.-|+.+
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 99999999999988522 36678889999999999999999999988753
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.73 E-value=0.0003 Score=58.45 Aligned_cols=70 Identities=20% Similarity=0.116 Sum_probs=64.7
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
..+++.|...++.|+|.+|++.++.+....|-. ..|.+.++.+|++.++|++|+..+++-++|.|+++.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 458899999999999999999999999998865 5889999999999999999999999999999999863
No 188
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=8.2e-05 Score=56.64 Aligned_cols=61 Identities=26% Similarity=0.295 Sum_probs=49.5
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 393 (437)
....+...|..+|+.|+|++|+..+++ +...+.. ..+++-+|.|++++|+|++|+..++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 344666789999999999999999999 6665532 355667799999999999999999875
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.71 E-value=0.00024 Score=68.10 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
++...-.++-+.||.+.-.|+|+.|+++|++++.+.-.... +...+...+.||.+|.-+.+|++||.|..+
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34445556778999999999999999999999987643321 123345678899999999999999999998
Q ss_pred HHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 393 VLDCD------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 393 al~~~------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
-|.+. -....+++.+|.+|-.+|+.++|+.+.++.+++.
T Consensus 301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77653 2346899999999999999999999998888763
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0003 Score=65.25 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013755 333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYM 412 (437)
Q Consensus 333 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~ 412 (437)
..+.-+...+.-|..+|++. .-|.-||.+|+.++++..|...|.+|+++.|+|+..+..+|.+++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~---------------egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 137 EMEALIARLETHLQQNPGDA---------------EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCc---------------hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35556666777788888775 348899999999999999999999999999999999999999987
Q ss_pred Hhc---cHHHHHHHHHHHHHhCCCCCC
Q 013755 413 EIA---DLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 413 ~lg---~~~~A~~~~~~al~l~P~n~~ 436 (437)
... .-.+|...|++++.+||+|..
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 664 367899999999999999853
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=97.69 E-value=0.00027 Score=60.12 Aligned_cols=70 Identities=10% Similarity=-0.160 Sum_probs=65.2
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
....+..|.-++..|++++|...|.-..-++|.|++.++.+|.|+..+++|++|+..|-.|..++++|+-
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 4556788889999999999999999999999999999999999999999999999999999999998863
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.00055 Score=58.92 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=85.9
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
......|+.+...|+|.+|..+|++++.-.=.+ + ...++.+|.+.+..+++..|....++..+.+|
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d-------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAH-D-------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-C-------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 445678999999999999999999999743111 1 25678899999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 399 H--NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 399 ~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
. .+......|.+|..+|.+.+|...|+.++...|+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 4 4778888999999999999999999999988775
No 193
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.67 E-value=0.00029 Score=71.94 Aligned_cols=70 Identities=23% Similarity=0.172 Sum_probs=66.5
Q ss_pred hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
...+++.+|++|...|++++|+.+.++||+..|..+..|+.+|.+|...|++.+|.+.++.|-.+|+.|+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998774
No 194
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.67 E-value=0.00072 Score=67.78 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=57.3
Q ss_pred CccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (437)
Q Consensus 222 ~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~ 301 (437)
+|..|+++ ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+..+ -.|.++.|.|+|..+.
T Consensus 162 dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~--------~~gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 162 DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE--------LAGKEATFKVTVKEVK 230 (408)
T ss_pred CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc--------CCCCeEEEEEEEEEec
Confidence 45555543 357899999999999999999999999999999998665665322 2577899999999998
Q ss_pred ccc
Q 013755 302 KEK 304 (437)
Q Consensus 302 ~~~ 304 (437)
...
T Consensus 231 ~~~ 233 (408)
T TIGR00115 231 EKE 233 (408)
T ss_pred cCC
Confidence 653
No 195
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.66 E-value=0.0002 Score=72.21 Aligned_cols=101 Identities=13% Similarity=-0.006 Sum_probs=55.1
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..++.++...|..++|.+.+...++.|+-.|...+ .+.-.|..+..+|+-++|..++..++..|+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------------slAmkGL~L~~lg~~~ea~~~vr~glr~d~ 72 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------------SLAMKGLTLNCLGKKEEAYELVRLGLRNDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------------hHHhccchhhcccchHHHHHHHHHHhccCc
Confidence 34566777788888888888888888887665542 122333444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+.-.|.-+|..+..-.+|++|+.+|+.||.++|+|
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence 444444444444444444444444444444444444
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.64 E-value=0.00025 Score=72.92 Aligned_cols=103 Identities=18% Similarity=0.119 Sum_probs=89.4
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...+..+.+.+.-++|..+..+|-.+.+.. ...|+.+|.++...|++.+|.+.|..|+.+||+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 34455666666777788888999988887653 477999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHH--HHHHHHHhCCCCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAEL--DIKKAIEADPQNRNH 437 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~--~~~~al~l~P~n~~~ 437 (437)
++....-+|.++...|+-.-|.. .+..|+++||.|+++
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999998888877 999999999999864
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=6.7e-05 Score=49.43 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+.+++.+|.+|..+|++++|++.|+++++.+|+|++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 367899999999999999999999999999999975
No 198
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00036 Score=60.73 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
.+...+-++|..+++.++++.|+..+.+||.+.|... .++..+|.+|.++.+|+.|+.+|.++++
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---------------kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---------------KALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999988643 6677899999999999999999999999
Q ss_pred hCCCCHHHH
Q 013755 396 CDCHNVKAL 404 (437)
Q Consensus 396 ~~p~~~~a~ 404 (437)
.+|.+-.|-
T Consensus 197 ~dPs~~ear 205 (271)
T KOG4234|consen 197 SDPSRREAR 205 (271)
T ss_pred hCcchHHHH
Confidence 999887553
No 199
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.59 E-value=0.00016 Score=68.63 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=54.3
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL-ILAELDIKKAIEADPQNR 435 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~-~~A~~~~~~al~l~P~n~ 435 (437)
.+++.+|.|++.+|+|++|...+.++++.+|+++.++.++..+...+|+. +.+.+.+.+....+|+++
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 55777889999999999999999999999999999999999988888888 556677777777787764
No 200
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00053 Score=66.44 Aligned_cols=120 Identities=14% Similarity=-0.006 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC-------hHHHHHHHh------------hhHHHhhhHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-------DDEQKLVKS------------LRVSCWLNSAAC 376 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------~~~~~~~~~------------~~~~~~~nla~~ 376 (437)
..++.+.+.++.|-...+..+|++.|.++..+.|+++..- +.+-...+. -.+...-.||.-
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 3455667777777778888888888888888877765210 000000000 011222356667
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|....=|++|+.++++|--+.|+..+.....+.|+...|+|++|.+.|+..-.--|.|-
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 77777889999999999999999889888899999999999999999999888888764
No 201
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.00022 Score=62.83 Aligned_cols=72 Identities=13% Similarity=-0.022 Sum_probs=67.6
Q ss_pred hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.++.+++.+|..|-.+|-+.-|.-++.++|.+.|+.+.++..+|.-+...|+|+.|.+.|+..+++||.+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 346788899999999999999999999999999999999999999999999999999999999999999864
No 202
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.54 E-value=0.00019 Score=74.20 Aligned_cols=116 Identities=31% Similarity=0.421 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--ccCHHHHH
Q 013755 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LKDYQGAI 387 (437)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~Ai 387 (437)
.....+.++..++.+||.+|..++|..|.-.|..++.+.|.+.. ....++.|.+.||++ +++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhhc
Confidence 45677888999999999999999999999999999999986432 235678899988876 57899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
..|+-|+...|...+++++++.+|..++.++-|++++.-....+|++.+
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 9999999999999999999999999999999999999999999999854
No 203
>PRK10941 hypothetical protein; Provisional
Probab=97.53 E-value=0.00044 Score=64.53 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
++....+.|+=.+|.+.++|+.|+.+++..|.++|+++.-+--+|.+|.++|.+..|+.+++..++..|+++++
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556678999999999999999999999999999999988889999999999999999999999999998753
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=8.3e-05 Score=66.31 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=59.2
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.-|.+++.-.+|..|+.+|.+||.++|..+..|-+++.||+++++|+.+..++++|++++|+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 456778888999999999999999999999999999999999999999999999999999975
No 205
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.52 E-value=0.00031 Score=66.74 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=71.0
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--cc--CHHHHHHHHHHHHHhCCC
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LK--DYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~--~~~~Ai~~~~~al~~~p~ 399 (437)
.-..+++.++++.|.+.++.+-+..++ .+..+++.++.. .| ++.+|.-.|++..+..+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 444667788888888777776554322 335555554433 33 699999999998888888
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++..+..+|.|++.+|+|++|.+.+++|+..+|+|++
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 9999999999999999999999999999999998764
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00072 Score=61.30 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC------------CChHH--------H----HHH--HhhhHHHhhhH
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS------------FVDDE--------Q----KLV--KSLRVSCWLNS 373 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~~~--------~----~~~--~~~~~~~~~nl 373 (437)
..+...+.+.-.|.|.-.+..|.+.++.+|.... +.+.+ . ..+ -.....++.|.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666667777777777777777775532110 00100 0 001 12234567889
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 374 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
+.+|.-.++|..|...+++++..||.++.+-.+.|.|++.+|+..+|++.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999964
No 207
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.47 E-value=0.00017 Score=44.33 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.3
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
.+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568999999999999999999999999999964
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00037 Score=64.18 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=77.7
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
.+....+.|..+|+.|+|+.|++.|+.|++..-..+ -+-+|+|.|+++.++|..|+++..+.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp---------------llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---------------LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc---------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 356678899999999999999999999999866554 44789999999999999999999988865
Q ss_pred ----CCCC-------------------------HHHHHHHHHHHHHhccHHHHHHHH
Q 013755 397 ----DCHN-------------------------VKALYRRAQAYMEIADLILAELDI 424 (437)
Q Consensus 397 ----~p~~-------------------------~~a~~~~g~~~~~lg~~~~A~~~~ 424 (437)
.|.. ..|+..++.+++..++++.|.+.+
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 3321 266788899999999999998764
No 209
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.40 E-value=0.00073 Score=46.18 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~ 410 (437)
.+++.+|..++++|+|.+|..+++.+|+++|+|..|......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4578899999999999999999999999999998887655444
No 210
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.40 E-value=0.0012 Score=62.58 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=92.5
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC----------C-Ch----H-------------HHHHHHhhhHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS----------F-VD----D-------------EQKLVKSLRVS 368 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~----------~-~~----~-------------~~~~~~~~~~~ 368 (437)
++....+.|..++...++.+|+..+.+.|....+... . .+ + ...+....+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999888876543211 0 00 0 01223345567
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV-----KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~-----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++.|++..+.++.+|.+++.++.-.+.+-...+ .++..+|.++..++.|+++++.|++|+++.-++.|
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 899999999999999999999999998744333 67888999999999999999999999998776654
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.00076 Score=61.91 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=63.4
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
.++.|.-+++.|+|..|...|..-+...|++ +.|+|++|.+++.+|+|++|...|..+.+-.|+++-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC
Confidence 7899999999999999999999999999987 589999999999999999999999999999998864
No 212
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0018 Score=65.38 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=89.7
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+++.|..+|+.++|..|++.|...+...+.+... ..-+....+++.||+++.+.+.|++++.+|=+.+|
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 457889999999999999999999999998875421 12267788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.++-.-+.+-++....+.-++|+....+.+..
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99988888889999999999999988877654
No 213
>PRK01490 tig trigger factor; Provisional
Probab=97.38 E-value=0.0014 Score=66.20 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=55.4
Q ss_pred CccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (437)
Q Consensus 222 ~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~ 301 (437)
+|..|+++ ...++.|.+|.+.+++||+.+|.+|++|+...|.++..-.|+... -.|....|.|.|..+.
T Consensus 173 ~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~--------lagk~~~f~v~v~~V~ 241 (435)
T PRK01490 173 DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED--------LAGKEATFKVTVKEVK 241 (435)
T ss_pred CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc--------CCCCeEEEEEEEEEec
Confidence 44555433 346899999999999999999999999999999886544554322 2467899999999998
Q ss_pred ccc
Q 013755 302 KEK 304 (437)
Q Consensus 302 ~~~ 304 (437)
...
T Consensus 242 ~~~ 244 (435)
T PRK01490 242 EKE 244 (435)
T ss_pred cCC
Confidence 653
No 214
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.37 E-value=0.00073 Score=68.29 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=52.0
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
.-.|..+-..++|++|+.+|+.||.+.+++ ..++.-+|....++++|+-....-.+.|++.|.+-
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN---------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDN---------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 334444555555666666666666555443 24455555555566666555555555556666555
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
-.|+..|.++..+|+|..|...++...+
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666555544443
No 215
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.37 E-value=0.0013 Score=66.67 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---------CChHHHHHHHhhhHH---------HhhhHHHHHHhccC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FVDDEQKLVKSLRVS---------CWLNSAACCLKLKD 382 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---------~~~~~~~~~~~~~~~---------~~~nla~~~~~~~~ 382 (437)
+.-.+..++..|+...|...+.+|++..|+... +...+.+..+.+... +|+.-+....-+++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 344566778888888998888888888776432 122333444444433 45555666666899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 383 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.++|++.|+++|+..|+..+.|..+|+++..+++.+.|.+.|...++..|+..
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 99999999999999999999999999999999999999999999999988764
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.33 E-value=0.00033 Score=69.86 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=84.8
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~ 407 (437)
+-..|+-..|+.++.+|+...|.... .-+.|||.++++.+-...|-..+.++|.++...+-.+|-+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~--------------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQD--------------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhc--------------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 44578899999999999988775432 2377999999999999999999999999998889999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 408 AQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 408 g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|.+|+.+.+.+.|++.|++|++++|+|++
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999999999999874
No 217
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.31 E-value=0.00065 Score=71.66 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=81.9
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
+..+|-.+.+.+++..|+..|+.|++..|.+. .+|..+|.+|...|+|..|++.|++|..++|.+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~---------------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY---------------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhH---------------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 34478888888999999999999999988764 668889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.-+-|..|.....+|+|.+|++.+...+..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 888999999999999999999888877653
No 218
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.28 E-value=0.0016 Score=66.03 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=83.9
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a 403 (437)
.++.....++.++|+++++++|+..|... .+|+.+|+++.++++.+.|...|...++..|+.+-.
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~---------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFH---------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchH---------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 34444556778888888888888887654 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 404 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
|..++..-...|+.-.|...|+++.--+|.|..
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 999999999999999999999999999998753
No 219
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.28 E-value=0.0026 Score=62.74 Aligned_cols=87 Identities=22% Similarity=0.173 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (437)
Q Consensus 331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~ 410 (437)
.++|+.|+..+++.....|. +..-+|.+++.+++-.+|++...++|+.+|.+...+...+..
T Consensus 182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46799999999997776543 245589999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 411 YMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 411 ~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
++..++++.|+...++|.++.|++-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEF 268 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhH
Confidence 9999999999999999999999863
No 220
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.26 E-value=0.00067 Score=41.20 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 403 ALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
|+|++|.++..+|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 66777777777777777777777777776653
No 221
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.24 E-value=0.0023 Score=67.72 Aligned_cols=100 Identities=17% Similarity=0.076 Sum_probs=87.2
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-HHHHHHHHHHHHHhCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVLDCDC 398 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai~~~~~al~~~p 398 (437)
.....|......++|++|++..+++|+.+|++. .++..+|.++..++. .++|-++|-.|.+++|
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNY---------------nA~vFLGvAl~sl~q~le~A~ehYv~AaKldp 68 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNY---------------NAQVFLGVALWSLGQDLEKAAEHYVLAAKLDP 68 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcc---------------hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCh
Confidence 345567788899999999999999999999875 568899999999998 9999999999999999
Q ss_pred CCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCC
Q 013755 399 HNVKALYRRAQAYME---IADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~---lg~~~~A~~~~~~al~l~P~n 434 (437)
+|.-||-.++..|.. ...++++-..|.+++.+.|+.
T Consensus 69 dnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 69 DNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 999999888888876 557888999999988877654
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00096 Score=62.90 Aligned_cols=88 Identities=22% Similarity=0.165 Sum_probs=71.0
Q ss_pred hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHH
Q 013755 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALY 405 (437)
Q Consensus 326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~ 405 (437)
..+..+.+|.-|+.+++-.+..... +. ..+-..+|.|++++|+|++|+..|+-+.+.+..+.+...
T Consensus 30 edfls~rDytGAislLefk~~~~~E-------EE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDRE-------EE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchh-------hh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence 3466778999999988877644221 11 244567899999999999999999999988777889999
Q ss_pred HHHHHHHHhccHHHHHHHHHHH
Q 013755 406 RRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 406 ~~g~~~~~lg~~~~A~~~~~~a 427 (437)
++|.|++.+|.|.+|...-.+|
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998776654
No 223
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.21 E-value=0.00036 Score=47.70 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
..+|.+|.++.++|+|++|+.+++.+|+++|+|..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 46899999999999999999999999999999964
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.20 E-value=0.0023 Score=58.29 Aligned_cols=71 Identities=23% Similarity=0.164 Sum_probs=65.9
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
..-+++-|...++.|+|.+|+..|+.+....|.. .++...++.++++.++|++|+..+++-+.+.|+++++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 4668999999999999999999999999998866 5899999999999999999999999999999999874
No 225
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.0045 Score=53.94 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=80.6
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
......+..++..+++++|+..++.++..-.+ ..++..+-.+||.+.++++++++|+...+..-.-.-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w 157 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW 157 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH
Confidence 34556788899999999999999999965321 134556678999999999999999988766543211
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+..--.+|.++..+|+-++|+..|++|++.++++
T Consensus 158 -~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 158 -AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 12335678999999999999999999999987654
No 226
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=61.31 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=58.9
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+.-.|+.+...++.++|+-.|+.|..+.|.. ..+|--|-.||+..+++.+|.-..+.++..-|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 344555555555666666666666555554432 34555666666666666666666666666666
Q ss_pred CCHHHHHHHH-HHH-HHhccHHHHHHHHHHHHHhCCCC
Q 013755 399 HNVKALYRRA-QAY-MEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 399 ~~~~a~~~~g-~~~-~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+++++-..| .++ ..-.--++|...++++|.++|..
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 6666666664 222 22233456666666666666653
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.12 E-value=0.0019 Score=61.17 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=83.9
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH- 399 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~- 399 (437)
+...|+.+...+.|++|++.|++|+++.....+. -+...++..||..+-++.++++|+-+..+|+++--.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 3347888899999999999999999987654432 233567889999999999999999999999887321
Q ss_pred ---C------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 400 ---N------VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 400 ---~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+ .-++|+++.++..+|+.-+|.++++.|.++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 3568999999999999999999999998763
No 228
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.12 E-value=0.00033 Score=43.25 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH
Q 013755 340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE 388 (437)
Q Consensus 340 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~ 388 (437)
+|++||++.|++. .+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~---------------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA---------------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH---------------HHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999875 779999999999999999863
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.11 E-value=0.00034 Score=43.81 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=12.8
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
|.+||.+|.++|+|++|+.+|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 230
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.002 Score=60.37 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=60.3
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN----VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.-|-.-|.-|++.++|..|+..|.+.|.....+ +-.|.+||.|.+.+|+|..|+.++.+|+.++|.+.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 3445567889999999999999999999876544 45689999999999999999999999999999874
No 231
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0081 Score=53.75 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=77.3
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-cCHHHHHHHHHHHHHhCCCC--
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVLDCDCHN-- 400 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~Ai~~~~~al~~~p~~-- 400 (437)
.+...|+..+..+|++++++++++..+...+ ...+.-+..+|..|..- .++++||.+|++|-+.....
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees 149 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES 149 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence 3444667778999999999999987665443 23345567788888764 89999999999998764432
Q ss_pred ----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 401 ----VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 401 ----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
-+.+..-|.--..+++|.+|++.|++.....-+|
T Consensus 150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3667777888888999999999999987765544
No 232
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0038 Score=58.97 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.||.+++..-.|++||+.|.++|.-+|+..-.-..+|.||.++.-|+-+-+.++--|..-|++
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 344444444556666666666666666555555556666666666666666666555555554
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0098 Score=53.24 Aligned_cols=105 Identities=23% Similarity=0.290 Sum_probs=80.2
Q ss_pred HHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 322 KEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 322 ~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
...|..|-.. .++++|+.+|++|-+...... .......+++..|..-.++++|.+|+..|+++....-+|
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555444 688999999999998875532 223345677888888888999999999999998766555
Q ss_pred H------HH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 401 V------KA-LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 401 ~------~a-~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
. +- ++..|.||+...+.-.|...+++-.+++|.-.
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 3 33 56678888888999899999999999999754
No 234
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.02 E-value=0.0012 Score=39.09 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
.+++++|.++..++++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666654
No 235
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.01 E-value=0.001 Score=41.56 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 403 ALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
+|.++|.+|..+|+|++|+..|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999775543
No 236
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0081 Score=60.41 Aligned_cols=113 Identities=23% Similarity=0.164 Sum_probs=83.9
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---------ChHHHHH----HHhhh-----HHHhhhHHHHHHhc
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------VDDEQKL----VKSLR-----VSCWLNSAACCLKL 380 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~----~~~~~-----~~~~~nla~~~~~~ 380 (437)
..++..-+.+-+.++|++|.....+.|...|++... ..+..+. +.... ....+..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 566677778888999999999999999887765421 1111111 11111 11125789999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
++.++|+..++ -+++...+.+..+|+.++++++|++|++.|+..++-+.++
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 99999999988 5666778899999999999999999999999987765443
No 237
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.95 E-value=0.0019 Score=59.86 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=62.4
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 437 (437)
-++.|.-..+.|+.++|...|+.||.++|+++.++..+|+....-++.-+|-.+|-+||.++|.|.+|
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 45666677789999999999999999999999999999999999999999999999999999998754
No 238
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.91 E-value=0.0014 Score=39.67 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=30.0
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
+++++|.||.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999974
No 239
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0059 Score=61.14 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCcchHHHHHhcccccCcEEEEE--EcCCCCCCccccccccccCCCCceEEEEEEEeeeeccc
Q 013755 233 GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVT--INHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304 (437)
Q Consensus 233 ~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~--i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~ 304 (437)
...-+.|.||.+.++||++.+|.+|+.|+...|. +|.+|.-+. -.|.+..|.|.|..+....
T Consensus 181 ~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~----------LaGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 181 KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEE----------LAGKEATFKVKVKEVKKRE 244 (441)
T ss_pred cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhH----------hCCCceEEEEEEEEEeecC
Confidence 4567899999999999999999999999998854 465554321 2456788999999987643
No 240
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.84 E-value=0.0032 Score=58.38 Aligned_cols=84 Identities=19% Similarity=0.121 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
.+.+.+......|....+.|+.++|..+|+.|+.+.|..+ .++...|.....-++.-+|-++|-+
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p---------------~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP---------------QILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH---------------HHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 3455566666677888999999999999999999999875 6688889888888999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH
Q 013755 393 VLDCDCHNVKALYRRAQAY 411 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~ 411 (437)
||.++|.|.+|+.+++...
T Consensus 176 ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 176 ALTISPGNSEALVNRARTT 194 (472)
T ss_pred eeeeCCCchHHHhhhhccc
Confidence 9999999999999988754
No 241
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.84 E-value=0.0048 Score=63.42 Aligned_cols=68 Identities=15% Similarity=-0.032 Sum_probs=59.7
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...|..+...|++++|...|++|+.+.|+ ..+|..+|.++...|++++|+..|++|+.++|.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3455677778899999999999999999873 257999999999999999999999999999999
Q ss_pred CHHH
Q 013755 400 NVKA 403 (437)
Q Consensus 400 ~~~a 403 (437)
++..
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 8753
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.79 E-value=0.0076 Score=61.35 Aligned_cols=101 Identities=24% Similarity=0.202 Sum_probs=81.4
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
--+...|..+...|+.++|+..|++++.... ...++..-+++.+|.|++-+.+|++|..++.+.++.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-----------~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQS-----------EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchh-----------hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 3456788889999999999999999984321 23455677899999999999999999999999988653
Q ss_pred CCHHH--HHHHHHHHHHhccH-------HHHHHHHHHHHHhC
Q 013755 399 HNVKA--LYRRAQAYMEIADL-------ILAELDIKKAIEAD 431 (437)
Q Consensus 399 ~~~~a--~~~~g~~~~~lg~~-------~~A~~~~~~al~l~ 431 (437)
..++ .|..|.|+..+++. ++|...|+++-.+-
T Consensus 337 -WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 337 -WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred -cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 4455 46678999999999 88888888876653
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.79 E-value=0.024 Score=49.84 Aligned_cols=94 Identities=29% Similarity=0.329 Sum_probs=46.2
Q ss_pred HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-CHHHHH
Q 013755 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-NVKALY 405 (437)
Q Consensus 327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~ 405 (437)
.++..++++.|+..|.+++...+.... ....+..++..+...+++..|+..+.+++...+. ...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 666667777777777776664432000 1122233333344444555555555555555444 344455
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 406 RRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 406 ~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
.++.++...++++.|+..+.+++...|
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 555555555555555555555544444
No 244
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.012 Score=59.18 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=84.1
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC------------hHHHHH----HHhhhHHHhhhHHHHHHhccCH
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV------------DDEQKL----VKSLRVSCWLNSAACCLKLKDY 383 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~~~~~~----~~~~~~~~~~nla~~~~~~~~~ 383 (437)
.+.-+|..+|+.++|++|+..|+..++-...+.+.. ..++.+ ..+---..++|.|..+...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 556689999999999999999999876433221100 000000 0011235789999999999999
Q ss_pred HHHHHHHHHHHHh-------CCCC--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 384 QGAIELCSKVLDC-------DCHN--------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 384 ~~Ai~~~~~al~~-------~p~~--------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+|++.+++|+.+ +..+ .-....++.++..+|+-++|...|...++.+|.|.
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 9999999999543 1112 13467889999999999999999999999988764
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.037 Score=51.50 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=80.0
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHH-------
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS------- 391 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~------- 391 (437)
+.....+..+...+++..|...|..++...|... .+..-++.||...|+.+.|...+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~---------------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENS---------------EAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc---------------hHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 4456778889999999999999999999988764 446677788888777755444333
Q ss_pred ---------------------------HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 392 ---------------------------KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 392 ---------------------------~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
+.+..||++..+-+.+|..|...|++++|++.+-..++.+-+
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 233448999999999999999999999999999888877543
No 246
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.014 Score=53.22 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+++..|.-.|+..-+..|..+..+..++.|++.+++|++|...++.||.-++++++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 34666777777666655566677777777777777777777777777777666653
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.66 E-value=0.0027 Score=37.37 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=30.0
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
.+++++|.++..++++++|+.+++++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 457899999999999999999999999998863
No 248
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.64 E-value=0.016 Score=59.42 Aligned_cols=98 Identities=15% Similarity=0.021 Sum_probs=85.7
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
.-.++-.+..+-..|+|++|+....+||...|.. ..+|+..|.++-++|++.+|...++.|-.+|
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---------------VELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 3456778888889999999999999999998764 4779999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
+.+--.-...++.+++.|+.++|...+..-..-
T Consensus 259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 988777777888889999999999988765443
No 249
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.63 E-value=0.0034 Score=54.10 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCCCC
Q 013755 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD----------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~----------~~~A~~~~~~al~l~P~n~ 435 (437)
-|+.|.+.++.....+|.++.+|++.|.+++.+.+ +++|+.-|++||.++|+..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h 69 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH
Confidence 37899999999999999999999999999998855 5779999999999999864
No 250
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.62 E-value=0.0016 Score=64.00 Aligned_cols=66 Identities=32% Similarity=0.262 Sum_probs=60.9
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+-+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.++.+.++|..|+.++.+|++++|...
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 346677788899999999999999999999999999999999999999999999999999999753
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.59 E-value=0.026 Score=49.66 Aligned_cols=103 Identities=26% Similarity=0.201 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHH-HHHhccCHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA-CCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~~~~~~~Ai~~~~~al 394 (437)
.....+...+..+...+++..|+..+.+++...+... ......+. ++...+++..|+..+.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD---------------LAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566777788888888888888888888765542 11223333 7888888888888888888
Q ss_pred HhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 395 DCDC---HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 395 ~~~p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
..+| .....++.++..+...++++.|+..+.+++...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 8776 35666777777778888888888888888887765
No 252
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.58 E-value=0.0076 Score=49.19 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=56.7
Q ss_pred HHHhhhHHHHHHhcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 367 VSCWLNSAACCLKLK---DYQGAIELCSKVLD-CDCH-NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 367 ~~~~~nla~~~~~~~---~~~~Ai~~~~~al~-~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
....+|+|.|+.+.. +.++.+..++..++ -.|. .-..+|.+|..++++++|+.|+.+++..|+.+|+|+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 456788888887754 46778888888886 4443 3467889999999999999999999999999999875
No 253
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.54 E-value=0.037 Score=50.03 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=74.2
Q ss_pred hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-------HHHHHHHHHHHHHhCC
Q 013755 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-------YQGAIELCSKVLDCDC 398 (437)
Q Consensus 326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------~~~Ai~~~~~al~~~p 398 (437)
..+-....+++|+..|.-||-........ ....+.+++.+|-+|..+++ +.+|+..|.+|++...
T Consensus 85 ~~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 85 RDFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35556678999999999999875422111 12456788899999999988 4556677777766542
Q ss_pred C------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 399 H------NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 399 ~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
. ....+|.+|..+.++|++++|+.+|.+++..-
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 2 25789999999999999999999999998654
No 254
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.50 E-value=0.042 Score=52.94 Aligned_cols=114 Identities=13% Similarity=-0.052 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc---------CCCCCh-------HHHHHHHhhhHHHhhhHHHHHHh
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---------DGSFVD-------DEQKLVKSLRVSCWLNSAACCLK 379 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~nla~~~~~ 379 (437)
.........+..+...|++++|.+...++|+..-+ ....+. +.+.........+++.||..+++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 33555566777888999999999999999884211 111111 23334444455788999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.+.|.+|-.+++.|+...| +...+..+|.++.++|+..+|.+.++.+|.+
T Consensus 341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999987 4677889999999999999999999999854
No 255
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.48 E-value=0.035 Score=43.95 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=78.1
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHH----HHhccCHHHHHHHHHHHHHhCCC
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC----CLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.|..+|.+|++-+|++..+..+.....+... + .+..+...+++.+|.. -.+.--.-.|++++.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~----~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS----W-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch----H-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 5778999999999999999999886654321 1 2334444445455433 12223356789999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
.+..+|.+|.=+-....|++++.-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999998888889999999999999763
No 256
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.46 E-value=0.033 Score=61.79 Aligned_cols=64 Identities=25% Similarity=0.054 Sum_probs=46.7
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH--------NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~--------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
.++.++|.++...|++++|...+++++.+... ....+..+|.++...|++++|...+.+++.+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 45677888888888888888888888775211 12335567778888888888888888887764
No 257
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.46 E-value=0.0043 Score=55.25 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=56.8
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 375 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
....+.++.+.|.+.|.++|++-|.+...|||+|....+.|+++.|.+.|++.|+++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456788999999999999999999999999999999999999999999999999999874
No 258
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.24 E-value=0.053 Score=60.21 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=79.7
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
....|..++..|++++|...+++++...+... ......++.++|.++...|++++|...+.+++......
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 33467778899999999999999998644321 01133456789999999999999999999999763321
Q ss_pred ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 401 ------VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 401 ------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
..++.++|.++...|++++|...+++++.+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999999886
No 259
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.023 Score=52.72 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=72.9
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~ 407 (437)
+.+..+|..||++...-.+..|... ..+.-||.||+...+|..|..+|++.-.+.|...+.-+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r---------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR---------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4677888999998887777766432 4577899999999999999999999999999999988889
Q ss_pred HHHHHHhccHHHHHHHHHHHH
Q 013755 408 AQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 408 g~~~~~lg~~~~A~~~~~~al 428 (437)
|+.+++.+.|.+|++......
T Consensus 85 AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhc
Confidence 999999999999988765543
No 260
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.10 E-value=0.0018 Score=60.96 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=55.0
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+..|.++.|++.|..+++++|.+...|-.++.+++++++...|+++|..|++++|+..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 34567899999999999999999999999999999999999999999999999999764
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.10 E-value=0.091 Score=46.05 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
......+...|+.|.+.|+++.|++.|.++....... ......++++-.+.+..++|..+..+..+|-
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445677889999999999999999999988765332 3356778899999999999999999999987
Q ss_pred HhCC--CCH----HHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 395 DCDC--HNV----KALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 395 ~~~p--~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
.+-. .+. +.....|..++..++|.+|...|-.++
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 6532 222 233445777788899999998887665
No 262
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.08 E-value=0.092 Score=50.67 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC-----------CCChH-----HHHHHHh----hhHHHh
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-----------SFVDD-----EQKLVKS----LRVSCW 370 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-----------~~~~~-----~~~~~~~----~~~~~~ 370 (437)
...+..++......|..-+-.|+|.+|.+...++-+.-+... ...++ -..+..+ -...++
T Consensus 77 ~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ 156 (400)
T COG3071 77 SRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE 156 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence 446778888889999999999999999999988765432210 00000 0011111 123345
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 427 (437)
..++......+++..|.....++++..|.++.++-..-.+|..+|+|.+....+.+.
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 556666777777777777777777777777777777777777777777766665543
No 263
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=96.07 E-value=0.052 Score=43.50 Aligned_cols=81 Identities=15% Similarity=0.009 Sum_probs=65.3
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH----HH
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV----LD 395 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a----l~ 395 (437)
++-..|+..++.+++-.|+-+|++|+.+.......+..+.+++-...+....|||.-+..+|+-+-.++|.+-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999988765444445566666677777899999999999999999998755 55
Q ss_pred hCCCC
Q 013755 396 CDCHN 400 (437)
Q Consensus 396 ~~p~~ 400 (437)
+-|.-
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 55543
No 264
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.92 E-value=0.038 Score=59.48 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=75.6
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---------------ChHHHHHHHh----hhHHHhhhHHHHHHhcc
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------------VDDEQKLVKS----LRVSCWLNSAACCLKLK 381 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------------~~~~~~~~~~----~~~~~~~nla~~~~~~~ 381 (437)
+...-..+.+.|++++|.+.|+...+...-.+.. -++..+.+.+ -...+|..+..++...|
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 5555566666777777777776665422111110 0011111111 11345777878888899
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
+++.|...++++++++|++...|..+..+|...|++++|.+.++...+.
T Consensus 509 ~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999877654
No 265
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.92 E-value=0.076 Score=39.17 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+....+.|..+|...+.++|+..++++|+..++.+ .+..++-.+..+|...|+|.+++.+..+=++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999876532 2456778888999999999999998876655
Q ss_pred h
Q 013755 396 C 396 (437)
Q Consensus 396 ~ 396 (437)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 4
No 266
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.12 Score=47.31 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY 411 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~ 411 (437)
++++.|.-.|+..-...+.. ..+++-+|.|++.+++|++|....+.||..+++++.++.++-.+-
T Consensus 187 ek~qdAfyifeE~s~k~~~T---------------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPT---------------PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhhhHHHHHHHHhcccCCC---------------hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 45777777777755532222 256788999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHH-HHHHHHHhCCCC
Q 013755 412 MEIADLILAEL-DIKKAIEADPQN 434 (437)
Q Consensus 412 ~~lg~~~~A~~-~~~~al~l~P~n 434 (437)
..+|.-.++.. .+.+.....|++
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcc
Confidence 99998777664 444444555654
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.21 Score=45.25 Aligned_cols=105 Identities=14% Similarity=0.070 Sum_probs=67.6
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
+..+...++.+-..++|++|..++.+|.+...++..+ -..+..+-..+.....+..|.++..++++|..+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555666666789999999999999776554321 1123445556666667788888888888887662
Q ss_pred -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 398 -----CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 398 -----p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
|+-+-.-.-+|-=..+.-+.++|+..|++++.+-
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV 140 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3333333333333445567778888888877653
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.78 E-value=0.19 Score=47.46 Aligned_cols=121 Identities=19% Similarity=0.141 Sum_probs=88.3
Q ss_pred CCChHHHHHHHHHHHHHhhHHHhCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755 308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 386 (437)
.+++......+..+++.|..+++++ +|+.|...+++|+++.+.... .........+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4566777889999999999999999 999999999999999643111 01122345677889999999999998886543
Q ss_pred HHHHHHHH----HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 387 IELCSKVL----DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 387 i~~~~~al----~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.+ |.+++ ...|+.+..++..=.++.+.++.+++.+.+.+.+.-
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 33 44443 345776777655555666678888888888877754
No 269
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.78 E-value=0.038 Score=42.51 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 386 AIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 386 Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+..+++.++.+|++..+.|.+|.++...|++++|++.+-.+++.+++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 45678889999999999999999999999999999999999998887763
No 270
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.031 Score=51.54 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=65.9
Q ss_pred hhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
.......|+=..+...++|+.|+.+.++.+.++|.++.-+--+|.+|..+|.+.-|+.++...++..|+++.
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 345566778888999999999999999999999999999999999999999999999999999999998864
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.68 E-value=0.18 Score=47.17 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 359 QKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 359 ~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
...+.+....++..++..+...++++.++...++.++++|-+..+|.++-.+|+..|+...|+..|++.-++
T Consensus 145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 355667788999999999999999999999999999999999999999999999999999999999988764
No 272
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.58 E-value=0.022 Score=36.30 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=21.8
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
.++.|+|.+|..+|+|++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45778888888888888888888887765
No 273
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.52 E-value=0.3 Score=42.52 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=77.7
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+...++..|..+++..|...++...+..|..... .-.+-+|.++..+|++.+|...++.++...|
T Consensus 125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 345667888999999999999999998887654322 3366789999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 427 (437)
+ +.+-.+.+.-+.++|+.++|.+.+...
T Consensus 192 g-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 192 G-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred C-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4 778888899999999888887655443
No 274
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.019 Score=56.53 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=73.3
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHH-hhccC-CCCChHHH-HHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAAD-CVSED-GSFVDDEQ-KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~-~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 393 (437)
......+.|..+|+.+.|..++.+|.+||+ ..... ..+..... .-...-...+++|.|..|+..|+.-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 344456788999999999999999999996 22110 01111000 1112223467899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHh
Q 013755 394 LDCDCHNVKALYRRAQAYMEI 414 (437)
Q Consensus 394 l~~~p~~~~a~~~~g~~~~~l 414 (437)
....-.|+..|.|+|.|+...
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999998754
No 275
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.48 E-value=0.071 Score=56.32 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=62.6
Q ss_pred HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYR 406 (437)
Q Consensus 327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~ 406 (437)
.....++|.+|+....+.++..|+.. .+..--|..++++|+.++|..+.+..-..-+++...+--
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~---------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL---------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 34566788888888888888777643 223344667777777777774443333444556666777
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 407 RAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 407 ~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
+-.||..++++++|...|++++..+|+
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 777777777777777777777777776
No 276
>PRK10941 hypothetical protein; Provisional
Probab=95.45 E-value=0.17 Score=47.34 Aligned_cols=79 Identities=14% Similarity=-0.066 Sum_probs=67.6
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
..-+.+.=..+.+.++|+.|+++.+..+.+.|+++ .-+.-+|.+|.+++.+..|+.+++.-++..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp---------------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDP---------------YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 44556667788999999999999999999999876 225679999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 013755 398 CHNVKALYRRAQAY 411 (437)
Q Consensus 398 p~~~~a~~~~g~~~ 411 (437)
|+.+.+-.-+.++.
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 99998876665554
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.45 E-value=0.24 Score=48.25 Aligned_cols=116 Identities=18% Similarity=0.085 Sum_probs=85.0
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHH-hhccCCCCC------------------hHHHHHHHhhhHHHhhhHHHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAAD-CVSEDGSFV------------------DDEQKLVKSLRVSCWLNSAACCL 378 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~ 378 (437)
.....+.+..+...|+..+|+...+..+. ......... ...........+.+++.+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 45556677778888888889888888887 222210000 00123334566778888888777
Q ss_pred hc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------HHHHHHHHHHHHhCCC
Q 013755 379 KL------KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL-----------------ILAELDIKKAIEADPQ 433 (437)
Q Consensus 379 ~~------~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~-----------------~~A~~~~~~al~l~P~ 433 (437)
.+ +.+++++..|.++++++|.+.++++..|..+..+=+. ..|+..|-+|+.+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77 8899999999999999999999999999988766332 3488999999998876
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.45 E-value=0.15 Score=50.89 Aligned_cols=119 Identities=18% Similarity=0.092 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHH------hhHHHhC---CcHHHHHHHHHHHHHhhccCCCCCh------HHHHH----HHhhhHHHh
Q 013755 310 NNQGKIEAAGRKKEE------GNLLFKN---GKYERAGKKYNKAADCVSEDGSFVD------DEQKL----VKSLRVSCW 370 (437)
Q Consensus 310 ~~~~~~~~~~~~~~~------g~~~~~~---g~~~~A~~~y~~al~~~~~~~~~~~------~~~~~----~~~~~~~~~ 370 (437)
+.+.+++.+.+-.+. |..++.. .-..+|..+|++|++.....-..+. ..++. ......-+.
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 556666655544332 2222322 3368899999999987544221110 11111 112234456
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDCDCH--NVKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
..+|.|..++|+.++|++.+...++..|. +...++++-.+++.++.|.++...+.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 78999999999999999999999998875 56789999999999999999988887753
No 279
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.42 E-value=0.041 Score=54.33 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH-h-
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD-C- 396 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-~- 396 (437)
..+....+.+|..|+|.+|.+.+...---.......+ -+-.....++|+|.++++++.|.-+..+|.+||+ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T------~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT------PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc------chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 3455566777778888888776544211100000000 0112344578999999999999999999999996 1
Q ss_pred -------CC---------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 397 -------DC---------HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 397 -------~p---------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.| ..-..+|+.|..|+..|+.-.|.++|.++....-.||
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 11 1236799999999999999999999999988765554
No 280
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.41 E-value=0.099 Score=49.50 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=65.8
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLDCDCHNVK 402 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~~~p~~~~ 402 (437)
..+..-+.+..+.|...|.+|++..... ..+|...|..-++ .++.+.|...|+.+++..|.+..
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 3344444555788888888887432211 2567777777555 56666688888888888888888
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 403 ALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
.+.....-+..+++.+.|+..|++++..-|.
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888865443
No 281
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.24 E-value=0.12 Score=43.48 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
.....+...+..+...|++++|+..+++++..+|.+. .+|..+-.+|..+|++.+|+..|++...
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E---------------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE---------------EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455667778888999999999999999999998764 5688889999999999999999998743
No 282
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.08 E-value=0.31 Score=54.57 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=38.8
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSKVLDCD-CHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
.|..+-.+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|++..+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45555666667777777777777666654 33455666666666666666666666666554
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.07 E-value=0.17 Score=50.28 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013755 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI 414 (437)
Q Consensus 335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l 414 (437)
.+-...|++|+...+.+. .+|.+-..-..+.+.+.+--..|.++|..+|+++..|..-|.-.+..
T Consensus 88 ~rIv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~ 152 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI 152 (568)
T ss_pred HHHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence 445677999998877654 55666665555666699999999999999999999999988888877
Q ss_pred cc-HHHHHHHHHHHHHhCCCCCC
Q 013755 415 AD-LILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 415 g~-~~~A~~~~~~al~l~P~n~~ 436 (437)
+. .+.|.+.|.++|+.+|+++.
T Consensus 153 n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 153 NLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred ccchHHHHHHHHHHhhcCCCChH
Confidence 76 99999999999999999874
No 284
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.05 E-value=0.11 Score=42.50 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=56.5
Q ss_pred HHHHhhHHHhCC---cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 321 KKEEGNLLFKNG---KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 321 ~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
.++.+-.+.+.. +.++-+.+++..++.. .+ +-+..+.+.||..|+++++|++++++++..|+.+
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~--~~-----------~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSA--HP-----------ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhc--Cc-----------ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344555555443 4566677777777511 11 1134778899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 013755 398 CHNVKALYRRAQAYME 413 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~ 413 (437)
|+|..|.-..-.+.-+
T Consensus 102 ~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 102 PNNRQALELKETIEDK 117 (149)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999887655544433
No 285
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=95.01 E-value=0.12 Score=51.21 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhh-hHHHHHH-hccC-----HHHH
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL-NSAACCL-KLKD-----YQGA 386 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-nla~~~~-~~~~-----~~~A 386 (437)
.+.......+.|..+|..|+|.+|+..|+.+|...+-..--+.++..+++++...+.- -+|+-.. ..+. .++.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 4455556677899999999999999999999999886654455666666666655432 2332211 1111 2222
Q ss_pred HHHHHHHH-----HhCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 387 IELCSKVL-----DCDCHNVKALYRRAQ-AYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 387 i~~~~~al-----~~~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.+.++-|. ++.|.+...-+|.|. ..++.++|..|...-++.|++.|+.
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 23333322 334444443444444 3467889999999999999988864
No 286
>PLN03077 Protein ECB2; Provisional
Probab=94.95 E-value=0.22 Score=55.10 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=50.2
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
.+|..|-.++...++.+.|....+++++++|++...|..++.+|...|+|++|.+..+...+
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 34555555556678888888888899999999999999999999999999999888776654
No 287
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.95 E-value=0.11 Score=48.09 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=62.9
Q ss_pred hHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 356 DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 356 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
+++.+-+..+...++...|..|...|.+.+|++.|++++.++|-+...+..+-..|..+|+--.|+..|++.-
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455666777777788889999999999999999999999999999999999999999999888887776643
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.93 E-value=0.32 Score=48.57 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=75.2
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh-CC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-DC 398 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p 398 (437)
..+..|+.+.+.|+.++|++.|+..++..|.... ..++.||..|++.++.|.++.....+-=++ -|
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 3456899999999999999999999998875432 367899999999999999988777663222 24
Q ss_pred CCHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHHhCCCCC
Q 013755 399 HNVKALYRRAQAYME-IAD---------------LILAELDIKKAIEADPQNR 435 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~-lg~---------------~~~A~~~~~~al~l~P~n~ 435 (437)
+.+...|..|....+ .++ -..|++.+.+|.+.+|.-+
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 555555555443322 111 2347789999999999765
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.81 E-value=0.068 Score=33.96 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999976
No 290
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.80 E-value=0.18 Score=39.03 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=50.3
Q ss_pred HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
...+.++|..|++.+.+............. ......+++++|.++...|++++|+..+++|+.+-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457889999999999999987654332110 12234568899999999999999999999999874
No 291
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.75 E-value=0.057 Score=34.03 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 402 KALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
..|.++|.+-+...+|++|+.+|++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888764
No 292
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.22 Score=47.20 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=78.1
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---CC---------hH-HHHHHH----------hhhHHHhhhHHH
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---FV---------DD-EQKLVK----------SLRVSCWLNSAA 375 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---~~---------~~-~~~~~~----------~~~~~~~~nla~ 375 (437)
+.....+..++.+|++.+|...+.+.|+-.|.+-- +. .+ ....+. ....-++--+|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 45566777889999999999999999987775421 00 00 000111 111223345677
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
++...|-|.+|.+..++++++++.+.-+..-++.++...+++.++++...+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 888899999999999999999999988888899999999999999887765
No 293
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.72 E-value=0.48 Score=53.14 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=65.3
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhh--ccCCC----------C-C-hHHHHHHHh-------hhHHHhhhHHHHH
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS----------F-V-DDEQKLVKS-------LRVSCWLNSAACC 377 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--~~~~~----------~-~-~~~~~~~~~-------~~~~~~~nla~~~ 377 (437)
..+......|.+.|++++|+..|.+..... |+... . . ++....... ....+|+.+..+|
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455566666777777777777777665531 11000 0 0 000011111 1134567777777
Q ss_pred HhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 378 LKLKDYQGAIELCSKVLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 378 ~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|++.|++...
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888887776543 34 456677777777777888888777776654
No 294
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.65 E-value=0.35 Score=52.17 Aligned_cols=116 Identities=9% Similarity=-0.017 Sum_probs=81.2
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh--ccCCC------------CChHHHHHHHhhh--------HHHhhhHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS------------FVDDEQKLVKSLR--------VSCWLNSAA 375 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~ 375 (437)
...+......|.+.|++++|+..|++.+... |+... .-++-..-...+. ...|..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 4567788889999999999999999987642 21100 0011111111111 125667778
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.++++|++.
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 888889999998887654 2334 456788888888999999999999999999999864
No 295
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.29 E-value=0.16 Score=39.34 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=47.8
Q ss_pred HHhccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCH---------NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
..+.++|..|++.+.+.+..... ...++.++|.++...|++++|+..+++|+.+...+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 45789999998888888765321 146789999999999999999999999998865443
No 296
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.24 E-value=0.26 Score=53.91 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=76.0
Q ss_pred HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-------cCHHHHHHHHHHHHH
Q 013755 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-------KDYQGAIELCSKVLD 395 (437)
Q Consensus 323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-------~~~~~Ai~~~~~al~ 395 (437)
.-.++++..+.|++|+..|++.-...|....- -.+.+.+|.+.+.+ ..+.+|+.-|++ |.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 546 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LH 546 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hc
Confidence 34566788899999999999999888764322 23445555554432 357778887776 34
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
--|.-+--|...|.+|..+++|++-+++|..|++--|++|+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 44666777888999999999999999999999999998876
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.41 Score=43.44 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=69.4
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH----hC--
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD----CD-- 397 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~-- 397 (437)
.+-.....-+.++|+++|++++.+...+.. .......+...+..+.++++|.+|-..+.+-.. .+
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 344455666888999999999988765432 233445677888899999999999887776432 22
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
++--+++.-.-.+|+...+|..|...++.+-++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 2334556555566677779999999999876653
No 298
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.23 E-value=0.78 Score=45.34 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhHHHhCCc-HHHHHHHHHHHHHhhccCCCCCh-------------------HHHH------------
Q 013755 313 GKIEAAGRKKEEGNLLFKNGK-YERAGKKYNKAADCVSEDGSFVD-------------------DEQK------------ 360 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~-------------------~~~~------------ 360 (437)
++.+.+.-+...|..+.+.|+ -++|+++++.++..-+.+..-.. ...-
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 345667777888888888887 77888888888876554321000 0000
Q ss_pred --HHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 361 --LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 361 --~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
.+.+....-.+.=|.-++..|+|.+|..++.=..+.+| ++.+|-.+|.|++...+|++|..+++.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 00000011122223446779999999999999999999 899999999999999999999998875
No 299
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.17 E-value=0.072 Score=47.70 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=54.1
Q ss_pred hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
...++.++++.|.+.|.+|+.+.|... .-|+.+|....+.|+++.|.+.|+++|+++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~---------------~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWA---------------AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhh---------------hhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456788999999999999999988643 5589999999999999999999999999999763
No 300
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=0.62 Score=46.22 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=85.7
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
+..-|.---.+++++.|.+.|++||..+..+ +.+|+..+.+-++.++...|...+++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 3344455556788999999999999886443 4789999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
-+.||..-..-..+|+..-|.+.|++=++..|+.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence 8999999888899999999999999999998864
No 301
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=0.46 Score=47.13 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=47.1
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
-.++++++.+...|++-|+..|.|..+|...|..-..||+.+.|...|.-|+..
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 456888999999999999999999999999999999999999999988888753
No 302
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.85 E-value=0.48 Score=50.35 Aligned_cols=99 Identities=16% Similarity=0.044 Sum_probs=72.7
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
..-.|-.+++.|++++|.. +-+++...+.+. -..+--+-.||..++++++|...|++++..+|+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~-~Le~~~~~~~~D--------------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~- 109 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALK-LLEALYGLKGTD--------------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS- 109 (932)
T ss_pred HHHHHHHHHHhcCchhHHH-HHhhhccCCCCc--------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence 3446778899999999994 444454433321 133556788999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+.++.+=.||.+-++|.+=.+.--+..+..|+++
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 88888888999988888664444333444566654
No 303
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.6 Score=42.92 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=57.6
Q ss_pred hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLD----CDC--HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+....+...|+.+.++.|+.+.|..+++++-+ ++. .+.-.+.+++.+|...++|.+|...|.+++..||.|+-
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 44556778899999999999999999995543 332 23455677777888888999999999999999998864
No 304
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.77 E-value=0.26 Score=50.28 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 013755 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN----VKALYR 406 (437)
Q Consensus 331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----~~a~~~ 406 (437)
....+.|.+.....+...|+.. -.++..|..+...|+.++|+..+++++...... .-.+|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~---------------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA---------------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence 4566778888888888877643 346788999999999999999999998543322 355899
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 407 RAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 407 ~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+|.++..+.+|++|..+|.+.++.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764
No 305
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.28 Score=50.15 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=60.3
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
..++-|-|.-++++.+|..+++.|...+..-|.+ +|..-.++.||+.+.+.+.|++.+..|-+.+|.++
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 3455677889999999999999999999876654 57778899999999999999999999999999874
No 306
>PLN03077 Protein ECB2; Provisional
Probab=93.33 E-value=0.85 Score=50.45 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=68.2
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHh--hccCCCCC------------hHHHHHHHhh--------hHHHhhhHHHH
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADC--VSEDGSFV------------DDEQKLVKSL--------RVSCWLNSAAC 376 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~--~~~~~~~~------------~~~~~~~~~~--------~~~~~~nla~~ 376 (437)
..+......|.+.|+.++|+..|++..+. .|+...+. ++-+.-...+ ....|..+..+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 45777788888999999999999987763 23221110 0111111111 12345666666
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.+.|++++|.+.+++. ...|+ +..|..+-.++..-++.+.|....+++++++|++.
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 77777777777666653 34443 44454554555666677777777777777777764
No 307
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.30 E-value=1.2 Score=42.07 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=74.0
Q ss_pred HHHHhhHHHh-CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 321 KKEEGNLLFK-NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 321 ~~~~g~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
+...|..-+. .++.+.|...|+++++..+.+. ..++.....+.++++.+.|...|++++..-|.
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~---------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDP---------------DFWLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 4455666555 6777779999999999988754 44566667778899999999999999988765
Q ss_pred CH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 400 NV---KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 400 ~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.. ..|-+...-=...|+.+...+..+++.++-|++
T Consensus 103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 54 355555666677899999999999999998874
No 308
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=1.5 Score=43.80 Aligned_cols=105 Identities=20% Similarity=0.028 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHH
Q 013755 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELC 390 (437)
Q Consensus 312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~ 390 (437)
..+++....+.--+..++...+++.|..++++|..+....+.+ ..++..++.-||.||.+.. .+..|....
T Consensus 41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalL 112 (629)
T KOG2300|consen 41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALL 112 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHH
Confidence 3344444444444445567899999999999999988766654 2455677888999999887 899999999
Q ss_pred HHHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHHH
Q 013755 391 SKVLDCDCHNV----KALYRRAQAYMEIADLILAELDI 424 (437)
Q Consensus 391 ~~al~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~ 424 (437)
.+|+++..+++ +.+|.+++.+.-..+|..|++.+
T Consensus 113 rkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 113 RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 99999977664 77899999999999999998773
No 309
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.23 Score=47.05 Aligned_cols=86 Identities=19% Similarity=-0.008 Sum_probs=67.7
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-C---HHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-N---VKA 403 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~---~~a 403 (437)
+...|-|++|...-.+|+++++.+. .+...+|.++...+++.++.++..+.-..... . .--
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~---------------Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN 249 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDC---------------WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN 249 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcch---------------HHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence 4567889999999999999987753 55677888888899999999988775433221 1 233
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 404 LYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 404 ~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
|..-|.+|.+-++|+.|+..|.+-+
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHHH
Confidence 6778999999999999999998765
No 310
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.93 E-value=0.38 Score=29.92 Aligned_cols=33 Identities=18% Similarity=-0.013 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHH--HHHHHHhCCCC
Q 013755 402 KALYRRAQAYMEIADLILAELD--IKKAIEADPQN 434 (437)
Q Consensus 402 ~a~~~~g~~~~~lg~~~~A~~~--~~~al~l~P~n 434 (437)
+.++.+|..+...|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 44666666654
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.79 E-value=2.1 Score=36.55 Aligned_cols=86 Identities=14% Similarity=-0.028 Sum_probs=67.3
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
....+.+........++.+.+...+...--+-|... .+-.--|..+...++|.+|+..++.+.+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~---------------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP---------------ELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 355667777777888888888887776666666654 34566788899999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHhccH
Q 013755 397 DCHNVKALYRRAQAYMEIADL 417 (437)
Q Consensus 397 ~p~~~~a~~~~g~~~~~lg~~ 417 (437)
.|..+-+--.++.|+..+++.
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred CCCChHHHHHHHHHHHHcCCh
Confidence 888887777788888888874
No 312
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.75 E-value=0.85 Score=50.92 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=51.6
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+......|-+.+++++|.++|++.++-..+. ..+|...|..++++++-++|.....+||+.-|
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 345566666777777777777777777665421 23344444444444444444444444444444
Q ss_pred C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 399 H--NVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 399 ~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
. +.+..-..|+.-++.|+-+.++..|+-.|.-.|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 4 344444444444444444444444444444444
No 313
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.72 E-value=1.2 Score=49.75 Aligned_cols=66 Identities=18% Similarity=0.073 Sum_probs=60.6
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
.+|..|+-.|.+.+++++|.+.++.-++..-+..+.|.+.|..++...+-++|...+++||+--|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 456778888999999999999999999988888899999999999999999999999999999887
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=1.8 Score=38.08 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhh------hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-CH--H
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSL------RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-NV--K 402 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~--~ 402 (437)
.+.+.|-..|++++........-.....+.+..- ..-..+.+|..+...+++++|+..++.++..-.+ +. -
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 3445788889998887643322111222222111 1223456778899999999999999999965432 33 3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Q 013755 403 ALYRRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 403 a~~~~g~~~~~lg~~~~A~~~~~~a 427 (437)
+-.|+|.+...++++++|+..+...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 4589999999999999999887643
No 315
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.62 E-value=0.64 Score=45.21 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=76.8
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
-..+.+.|..|...|+++.|++.|.++-.+.... ...+..+.|+-.+-.-+++|.....+-.+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 3456678889999999999999999987776543 2245678888888889999999998888887651
Q ss_pred --------CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755 398 --------CHNVKALYRRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 398 --------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 427 (437)
.-.++...--|.+++.++.|..|..+|-.+
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 012466777888999999999999887654
No 316
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=2.5 Score=42.21 Aligned_cols=100 Identities=22% Similarity=0.183 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+....-.|......+.|+.|..+|..|.+.... .++.+-+..|+|..|++.++-+. +.++++
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld 428 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALD 428 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHH
Confidence 33455566777788889999999999999987533 24467778899999999776433 344443
Q ss_pred -hCCCC----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 396 -CDCHN----------VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 396 -~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+.|.| ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus 429 ~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 429 LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 45553 3568888888999999999999999999875
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.49 E-value=0.21 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=27.2
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 397 (437)
.+|..||.+.+..++|.+|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999874
No 318
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.30 E-value=1.7 Score=42.62 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh--------------C
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC--------------D 397 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--------------~ 397 (437)
..|+++...|..++... ++.. --..-.....-+..++.++.++..+|++..|-+.+++||-. +
T Consensus 8 ~~Y~~~q~~F~~~v~~~--Dp~~-l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~ 84 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH--DPNA-LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN 84 (360)
T ss_pred HHHHHHHHHHHHHHHcc--CHHH-HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45666666666666542 1100 00001112223577899999999999999999999998632 1
Q ss_pred CC------------C---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CC
Q 013755 398 CH------------N---VKALYRRAQAYMEIADLILAELDIKKAIEADPQ-NR 435 (437)
Q Consensus 398 p~------------~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~ 435 (437)
+. | ..++++....+.+.|-+..|+++++-.+.+||. |+
T Consensus 85 ~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 85 LTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred cccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 11 1 267899999999999999999999999999998 54
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.19 E-value=1.2 Score=34.25 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh
Q 013755 337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--VKALYRRAQAYMEI 414 (437)
Q Consensus 337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~l 414 (437)
.+..+++++..+|.+. .+.+.+|.+++..|++++|++.+-.++..++++ -.+--.+=.++..+
T Consensus 7 ~~~al~~~~a~~P~D~---------------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDL---------------DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 3556778888877753 678899999999999999999999999998866 56666666677777
Q ss_pred ccHHHHHHHHHHH
Q 013755 415 ADLILAELDIKKA 427 (437)
Q Consensus 415 g~~~~A~~~~~~a 427 (437)
|.-+.-...|++-
T Consensus 72 g~~~plv~~~RRk 84 (90)
T PF14561_consen 72 GPGDPLVSEYRRK 84 (90)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 7755444444443
No 320
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.89 E-value=0.27 Score=49.83 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=83.6
Q ss_pred HHHHhhHHH-hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 321 KKEEGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 321 ~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
+...+..|. .+|+..+|..+|..|+.+.+.... -.+++.+|.++.++|...+|--.+.-|+.-.|.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 344444444 468999999999999999876432 256788999999999999998888888888887
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
-..-+|-++.++..+++|......|..+++.+|.-
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 77779999999999999999999999999988853
No 321
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.73 E-value=1.9 Score=34.71 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
+..+-..+..+...|+|++++..-.+||.+......++.++= ++.+.+-+++|.++..+|+.++|+..|+++-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556677788999999999999999999876555544332 334577889999999999999999999998764
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.19 E-value=1.8 Score=45.21 Aligned_cols=92 Identities=29% Similarity=0.244 Sum_probs=73.1
Q ss_pred HHHHhhHHHhCC-----cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc---CHHHHHHHHHH
Q 013755 321 KKEEGNLLFKNG-----KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSK 392 (437)
Q Consensus 321 ~~~~g~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~ 392 (437)
....|..|++.. ++..|+..|.+|...... .+.+++|.||..-. ++.+|.++|..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----------------DAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 445777777743 788899999999887532 45788999988755 67899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhC
Q 013755 393 VLDCDCHNVKALYRRAQAYMEI----ADLILAELDIKKAIEAD 431 (437)
Q Consensus 393 al~~~p~~~~a~~~~g~~~~~l----g~~~~A~~~~~~al~l~ 431 (437)
|... .+..|.+++|.||..- .+...|..++++|-+..
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8876 5789999999998743 47889999999998876
No 323
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.18 E-value=2.9 Score=39.46 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=65.8
Q ss_pred HHhCCcHHHHHHHHHHHHHhhc-cCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHh----CC---
Q 013755 328 LFKNGKYERAGKKYNKAADCVS-EDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDC----DC--- 398 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~----~p--- 398 (437)
..++|+++.|...|.|+-.+.+ .++ ...+..+..++|.|...++.+ +++.|+..+++|+++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~--------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP--------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc--------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 4678999999999999988763 222 123456788999999999999 999999999999887 22
Q ss_pred CC-------HHHHHHHHHHHHHhccHHHH
Q 013755 399 HN-------VKALYRRAQAYMEIADLILA 420 (437)
Q Consensus 399 ~~-------~~a~~~~g~~~~~lg~~~~A 420 (437)
.. ...+..++.+|+..+.++..
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 11 35678889999988876543
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.03 E-value=3.1 Score=40.31 Aligned_cols=108 Identities=20% Similarity=0.128 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..+...+..+.+.|+++.|.....++....+..... ...+.+..|..+...|+..+|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667788889999999999999999988876432211 235566778888889999999998888777
Q ss_pred h--CCC--------------------------------CHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCC
Q 013755 396 C--DCH--------------------------------NVKALYRRAQAYMEI------ADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 396 ~--~p~--------------------------------~~~a~~~~g~~~~~l------g~~~~A~~~~~~al~l~P~n 434 (437)
. ... ..++++.+|.-...+ +.+++++..|++|.+++|+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1 100 136677788877777 88899999999999999865
No 325
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.98 E-value=1.4 Score=40.88 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=37.8
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.+.|..||..|+|++|+..|+.++...... ....+...++..+..|+.++|+.+..+..+-+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 356666666777777777766665443322 1234455556666666666666666666665443
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.94 E-value=2.5 Score=31.29 Aligned_cols=61 Identities=16% Similarity=0.010 Sum_probs=47.7
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
....|.-++..++.++|+...+++|+..++.. .++=.+..+|...|+|.+++++-.+=+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666788999999999999999887765 45566778899999999988876655544
No 327
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.75 E-value=2.9 Score=41.36 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=68.4
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHH--hccCHHHHHHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCL--KLKDYQGAIELCSKVL 394 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~~~~~~Ai~~~~~al 394 (437)
.......++..+|+.++|..|.+.+...+...+.... ...+..++.+|. ..-+|.+|.+.+++.+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456778888999999999999999998876333210 234556655554 4667888888888766
Q ss_pred HhCCC---------------------------------C-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 395 DCDCH---------------------------------N-----VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 395 ~~~p~---------------------------------~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
...-. . ..-++.-|.=....|+|+.|+.-+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43110 0 011334444445678899999999999876
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.13 E-value=0.41 Score=27.19 Aligned_cols=23 Identities=26% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHH
Q 013755 403 ALYRRAQAYMEIADLILAELDIK 425 (437)
Q Consensus 403 a~~~~g~~~~~lg~~~~A~~~~~ 425 (437)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45555666666666666655543
No 329
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=2 Score=39.85 Aligned_cols=75 Identities=20% Similarity=0.077 Sum_probs=63.4
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
...=..+...++++.|...-.+.+.++|.++.. +.-+|.+|.+++.+.-|+.+++..++..|+.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 344456788999999999999999999987622 56799999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 013755 402 KALYRRAQAY 411 (437)
Q Consensus 402 ~a~~~~g~~~ 411 (437)
.+-.-++...
T Consensus 250 ~a~~ir~~l~ 259 (269)
T COG2912 250 IAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHH
Confidence 8876666544
No 330
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=3.1 Score=44.49 Aligned_cols=121 Identities=15% Similarity=0.133 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHh-hhHHHH------HHhccCHHHH-
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCW-LNSAAC------CLKLKDYQGA- 386 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~------~~~~~~~~~A- 386 (437)
+.......+.|..+...|+|.+|+++|+.+|-..|-...-+.++..+++++...+. +-+|+. -+......++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 56677778899999999999999999999998776543333344444444444332 222221 1112233444
Q ss_pred -HHHHHHHHHhCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 387 -IELCSKVLDCDCHNVK-ALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 387 -i~~~~~al~~~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+..|-.-..+.|-+.- |+.---..++++++|..|.....+.|++.|..+
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 3333333455565433 333333467788888888888888888877543
No 331
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.04 E-value=0.51 Score=44.33 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYR-RAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~-~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
..|...+.-..+.+-|.+.-..|.++|..+|.|+..|.. -+.-+...++++.|++.|.++|.++|+++-
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 345555555566778999999999999999999998865 566678889999999999999999999873
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.98 E-value=2.8 Score=36.68 Aligned_cols=66 Identities=17% Similarity=0.044 Sum_probs=56.0
Q ss_pred hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
...++..+|.-|.+.|+++.|++.|.++.+..-.. ...++++-.+....++|.....++.+|-.+-
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999988875332 4678888899999999999999999987653
No 333
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.60 E-value=6.8 Score=36.98 Aligned_cols=98 Identities=22% Similarity=0.071 Sum_probs=71.6
Q ss_pred HHHHHHhhHHHh----CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-----c--CHHHHH
Q 013755 319 GRKKEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-----K--DYQGAI 387 (437)
Q Consensus 319 ~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-----~--~~~~Ai 387 (437)
......|..++. ..++.+|...|++|........ ..+.++++.+|..- - +...|+
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 355567777766 4589999999999998743211 23366777777653 1 234799
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 013755 388 ELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEADP 432 (437)
Q Consensus 388 ~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P 432 (437)
..+.++-... ++.+.+++|.+|.. ..++.+|..+|++|-+...
T Consensus 176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999988875 88999999988865 3489999999999987653
No 334
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.51 E-value=5.7 Score=38.77 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=69.9
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~ 407 (437)
....|+|+.|+++.+......--.. ......+..++...+..... -+...|..+..+++++.|+.+-+-.--
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~-------~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEK-------DVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHH
Confidence 4566777777777766555422111 12223334444444444433 458899999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 408 AQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 408 g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
+.+|+..|+..++-..++.+-+.+|.
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC
Confidence 99999999999999999999888875
No 335
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.35 E-value=5 Score=37.15 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Q 013755 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH------NVKALYRRA 408 (437)
Q Consensus 335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~------~~~a~~~~g 408 (437)
...+.++.+|+........ ..+...+...+|.-|++.|+|++|+++++.+....-. ....+..+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4556667777766543321 2334566778999999999999999999999754321 247788899
Q ss_pred HHHHHhccHHHHHHHHHHHH
Q 013755 409 QAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 409 ~~~~~lg~~~~A~~~~~~al 428 (437)
.|+..+|+.+..+...-+.+
T Consensus 226 ~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 226 ECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 99999999998887655443
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.82 E-value=4.2 Score=36.75 Aligned_cols=84 Identities=17% Similarity=0.025 Sum_probs=51.1
Q ss_pred HHHHHHHHhhHHHhCCc-------HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGK-------YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~-------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~ 389 (437)
.+..+...|-.|-..++ +.+|+..|.+|+......... .-...+.+-+|..+.++|++++|++.
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444444444555 455666666666543321110 01235678899999999999999999
Q ss_pred HHHHHHhCCCCH-HHHHHHHH
Q 013755 390 CSKVLDCDCHNV-KALYRRAQ 409 (437)
Q Consensus 390 ~~~al~~~p~~~-~a~~~~g~ 409 (437)
+.+++...-.+. ..+..+|.
T Consensus 188 fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 188 FSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHcCCCCCCcHHHHHHHH
Confidence 999998643332 35555554
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.80 E-value=6.5 Score=41.65 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=83.9
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC-------CCC----hHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------SFV----DDEQKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 386 (437)
+-.+.-.|......+..++|.+++.++++...... ..+ .+...-...++..++..++.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 34445557788888888899999999998765432 111 1233455677778888999999999999999
Q ss_pred HHHHHHHHHhC---CC------CHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755 387 IELCSKVLDCD---CH------NVKALYRRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 387 i~~~~~al~~~---p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~a 427 (437)
......+.... |. .+..+|..|..+...|+.+.|+..|.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~ 430 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKP 430 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence 99888777653 22 3678999999999999999999999833
No 338
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.80 E-value=4.6 Score=29.86 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
..+..+...|..+=+.|+|++|+.+|+.|++.+-
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999999999864
No 339
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.49 E-value=1.6 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=25.2
Q ss_pred HhhhHHHHHHhccCHHHHHHH--HHHHHHhCCCC
Q 013755 369 CWLNSAACCLKLKDYQGAIEL--CSKVLDCDCHN 400 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~--~~~al~~~p~~ 400 (437)
.++.+|..+..+|++++|+.. |.-+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 366789999999999999999 54888888764
No 340
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.46 E-value=11 Score=36.94 Aligned_cols=95 Identities=17% Similarity=0.031 Sum_probs=69.8
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 399 (437)
.+...+....-.|+|+.|.+.|+..+.. |.. +..-+..|=..-.++|..+.|++|.+++-+..|.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEt--------------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~ 186 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDD-PET--------------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ 186 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcC-hHH--------------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC
Confidence 4445667777889999999998876642 211 1111111222334689999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
-+-+..-.=......|+|+.|++..+....
T Consensus 187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 187 LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 998888877888999999999998876654
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.39 E-value=11 Score=31.77 Aligned_cols=84 Identities=10% Similarity=-0.086 Sum_probs=62.0
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
..+.+.........+.+++.......--+-|+... +-.--|..+...|+|.+|+..++.+.+-.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------------LDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------------cchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 34444455555578888887776655555566543 345678889999999999999999988887
Q ss_pred CCHHHHHHHHHHHHHhccH
Q 013755 399 HNVKALYRRAQAYMEIADL 417 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~ 417 (437)
..+-+--.++.|+..+|+.
T Consensus 76 ~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDA 94 (153)
T ss_pred CchHHHHHHHHHHHhcCCh
Confidence 7777767788898888874
No 342
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.21 E-value=7.3 Score=38.24 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=52.4
Q ss_pred HHhhhHHHHHHh---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhCCC
Q 013755 368 SCWLNSAACCLK---LKDYQGAIELCSKVL-DCDCHNVKALYRRAQAYMEI---------ADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 368 ~~~~nla~~~~~---~~~~~~Ai~~~~~al-~~~p~~~~a~~~~g~~~~~l---------g~~~~A~~~~~~al~l~P~ 433 (437)
.+....|.++.+ .|+.++|++.+..++ ...+.++..+...|.+|..+ ...++|+.+|.++.+++|+
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 334556777777 999999999999955 45667789999999988654 2478899999999999875
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.10 E-value=4 Score=43.47 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=67.3
Q ss_pred hHHHhCCcHHHHHHHHHHHHHhhc------cCCCCCh----HHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH--
Q 013755 326 NLLFKNGKYERAGKKYNKAADCVS------EDGSFVD----DEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV-- 393 (437)
Q Consensus 326 ~~~~~~g~~~~A~~~y~~al~~~~------~~~~~~~----~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a-- 393 (437)
......|-.++|..+|+++-+.+- .....++ .+.+ -+-.+...|+|.|.-+...++.+.|+++|+++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~-DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETK-DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc-cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 345566777888888877755321 1111110 0001 11223466889999888999999999999974
Q ss_pred --------HHhCCCC----------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 394 --------LDCDCHN----------VKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 394 --------l~~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
|.-+|.. .+.|-..|+-+...|+.+.|+..|..|-.
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 3334433 35566678888899999999999998864
No 344
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.80 E-value=7.5 Score=28.95 Aligned_cols=67 Identities=16% Similarity=0.039 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccC------CCCChHHHHHHHhhhHHHhhhHHHHHHhc
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED------GSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~------~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 380 (437)
-.+.+....+.|..+=..|+.++|+.+|++++..+... .....++|+....++-..-.+++.+-.++
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888899999999999999999999999976432 12234667777777766666666655443
No 345
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.78 E-value=1.3 Score=43.90 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=46.9
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCD---------CHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
+.-|..+|..+|+|..|++..+- ++++ +.+...+|..|.||+.+++|.+|++.|..+|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999987654 2322 23457799999999999999999999998874
No 346
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=6.4 Score=40.37 Aligned_cols=98 Identities=15% Similarity=-0.056 Sum_probs=72.1
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH-HHHHHHHHHhCCCCHH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA-IELCSKVLDCDCHNVK 402 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A-i~~~~~al~~~p~~~~ 402 (437)
....+...+....|......++..++.. +.++.||+.+....+..-.+ ...+..+....|+|..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~ 137 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPEN---------------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE 137 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCccc---------------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence 3444455566666666677777666543 46788998887776665544 4555559999999987
Q ss_pred HHHHH------HHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 403 ALYRR------AQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 403 a~~~~------g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
++..+ +.....+++..++...+.++..+.|.++.
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 138 FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 76666 88888899999999999999999998753
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.65 E-value=0.8 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=21.2
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCS 391 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~ 391 (437)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357899999999999999998775
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.61 E-value=3.7 Score=29.51 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
+..+..+...|..+=+.|+|++|+.+|.+|+..+-
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999999753
No 349
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.50 E-value=12 Score=36.84 Aligned_cols=101 Identities=15% Similarity=0.001 Sum_probs=65.1
Q ss_pred HHHHHHhhHHHh---CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh---------ccCHHHH
Q 013755 319 GRKKEEGNLLFK---NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK---------LKDYQGA 386 (437)
Q Consensus 319 ~~~~~~g~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------~~~~~~A 386 (437)
......|.++-+ .|+.++|++.+..++....... ...+.-+|.+|-. ....++|
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--------------~d~~gL~GRIyKD~~~~s~~~d~~~ldkA 245 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--------------PDTLGLLGRIYKDLFLESNFTDRESLDKA 245 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--------------hHHHHHHHHHHHHHHHHcCccchHHHHHH
Confidence 334456666666 8999999999999765533211 1223333333321 2346778
Q ss_pred HHHHHHHHHhCCCCH---------------------------------------------HHHHHHHHHHHHhccHHHHH
Q 013755 387 IELCSKVLDCDCHNV---------------------------------------------KALYRRAQAYMEIADLILAE 421 (437)
Q Consensus 387 i~~~~~al~~~p~~~---------------------------------------------~a~~~~g~~~~~lg~~~~A~ 421 (437)
+..|.++.+++|+.- ..+--++.+..-.+++++|.
T Consensus 246 i~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~ 325 (374)
T PF13281_consen 246 IEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI 325 (374)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888877776531 11233556677788999999
Q ss_pred HHHHHHHHhCCC
Q 013755 422 LDIKKAIEADPQ 433 (437)
Q Consensus 422 ~~~~~al~l~P~ 433 (437)
+.+++++++.|.
T Consensus 326 ~a~e~~~~l~~~ 337 (374)
T PF13281_consen 326 QAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHhhcCCc
Confidence 999999988775
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.34 E-value=7.8 Score=40.51 Aligned_cols=100 Identities=18% Similarity=0.068 Sum_probs=72.3
Q ss_pred HHHHHHHhhHHHhC-----CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-----CHHHHH
Q 013755 318 AGRKKEEGNLLFKN-----GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----DYQGAI 387 (437)
Q Consensus 318 ~~~~~~~g~~~~~~-----g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----~~~~Ai 387 (437)
+......|..++.- ++.+.|+..|+.|...... ........+.+.+|.||.+.. ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 34444555555543 6899999999999872000 000012345788999999843 788899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH
Q 013755 388 ELCSKVLDCDCHNVKALYRRAQAYMEIA---DLILAELDIKKAIE 429 (437)
Q Consensus 388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~ 429 (437)
.++.++-.+. ++.+.|++|.++..-. ++..|..+|..|..
T Consensus 314 ~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 314 KLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 9999998884 7889999999998766 57899999998875
No 351
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.00 E-value=3.1 Score=38.89 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013755 337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME 413 (437)
Q Consensus 337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~ 413 (437)
|.++|.+|+.+.|... ..|+.+|..+...++.-.|+-+|-+++...-..+.|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G---------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG---------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC---------------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999875 6699999999999999999999999997765568888888887777
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.88 E-value=14 Score=39.16 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhHHH-hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 316 ~~~~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.++......|..++ ...+++.|..+..+++.+... .. ..+++..+.+-++.++.+.+... |+..+++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~--------~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HR--------LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cc--------hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 45777788888888 678999999999999998765 32 23455666677799998888877 999999999
Q ss_pred HhCCC----CHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhC
Q 013755 395 DCDCH----NVKALYRRAQAYM--EIADLILAELDIKKAIEAD 431 (437)
Q Consensus 395 ~~~p~----~~~a~~~~g~~~~--~lg~~~~A~~~~~~al~l~ 431 (437)
+...+ ...-.|++-++.. ..+++..|++.++....+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 87544 3444555543322 2369999999999988765
No 353
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.76 E-value=6.8 Score=28.84 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 350 (437)
.+.+..+..+|..+=+.|+|.+|+.+|++|++.+-.
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 345777888999999999999999999999987643
No 354
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.59 E-value=2.7 Score=35.18 Aligned_cols=52 Identities=27% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL 419 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~ 419 (437)
...+..|...+..|+|.-|+..++.++..+|+|..+...++.+|..++.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4466788888999999999999999999999999999999999999987544
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.57 E-value=3.4 Score=43.99 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=49.1
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC---------------------DCHNVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~---------------------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
.+|.--|.-....|+.+.|+.+|..|-.. ...+--|.|.+|.-|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566677777788888888888876433 344567889999999999999999998887
Q ss_pred HHHh
Q 013755 427 AIEA 430 (437)
Q Consensus 427 al~l 430 (437)
|-.+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 7543
No 356
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.43 E-value=4.2 Score=29.98 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
+..+..+..+|...=..|+|++|+.+|.++|+.+-
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999763
No 357
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.32 E-value=6 Score=29.30 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
..+..+..+|..+=+.|+|++|+.+|.++|..+-
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999764
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.94 E-value=12 Score=36.86 Aligned_cols=107 Identities=17% Similarity=0.051 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc-CCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (437)
Q Consensus 312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~ 390 (437)
.+...--..++.....+-++|-|..|++..+-.+.++|. ++ .-+++-+=...++.++|+--++.+
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP--------------~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP--------------LGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------------chhHHHHHHHHHhcCCHHHHHHHH
Confidence 344455667777888899999999999999999999998 54 244555666677889998888888
Q ss_pred HHHHHhCCC-----CHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHhCC
Q 013755 391 SKVLDCDCH-----NVKALYRRAQAYMEIADL---------------ILAELDIKKAIEADP 432 (437)
Q Consensus 391 ~~al~~~p~-----~~~a~~~~g~~~~~lg~~---------------~~A~~~~~~al~l~P 432 (437)
+........ -+..-|.++.|++.+++- ++|...+.+|+..-|
T Consensus 163 ~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 163 ESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 876663221 346778899999999998 899999999998766
No 359
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.90 E-value=18 Score=37.14 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh--ccCCC----CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS----FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--~~~~~----~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 386 (437)
..+..+...+.+|..-...+-.++|+-.+.+|++-. +.... +...+. +.+. .+++.--.-+.+.|.|.-|
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eN---R~Fy-L~l~r~m~~l~~RGC~rTA 361 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPEN---RQFY-LALFRYMQSLAQRGCWRTA 361 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhh---HHHH-HHHHHHHHHHHhcCChHHH
Confidence 445556666666666666666666666666666531 11100 000010 1111 1122222344568999999
Q ss_pred HHHHHHHHHhCCC-CH
Q 013755 387 IELCSKVLDCDCH-NV 401 (437)
Q Consensus 387 i~~~~~al~~~p~-~~ 401 (437)
.++|.-.+.++|. ++
T Consensus 362 ~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 362 LEWCKLLLSLDPSEDP 377 (665)
T ss_pred HHHHHHHhhcCCcCCc
Confidence 9999999999998 54
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.75 E-value=1.7 Score=28.34 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=20.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 405 YRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 405 ~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
+.+|.+|..+|+++.|+..++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 361
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=8.1 Score=35.72 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=19.7
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCC
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDG 352 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~ 352 (437)
+++..+-.+|+++-..++.++|.+.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnY 77 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANY 77 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccc
Confidence 4556677889999999999988654
No 362
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.49 E-value=2.8 Score=39.34 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=48.5
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
.-+.-....+++.+|...+..++..+|.+..+...++.||...|+.+.|...+..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3455566789999999999999999999999999999999999999988877654
No 363
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.60 E-value=8.9 Score=32.75 Aligned_cols=69 Identities=14% Similarity=-0.049 Sum_probs=59.3
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
...+..+..+-.+.++..++...+.-.--+.|+.+..-..-|..+...|+|.+|+..|+.+..-.|..+
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 455667777788888999999988888889999999999999999999999999999999876666543
No 364
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=83.54 E-value=7.1 Score=28.66 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
+..+..+..+|...=..|+|++|+.+|.+|+..+-
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999763
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.25 E-value=23 Score=38.35 Aligned_cols=110 Identities=15% Similarity=-0.033 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.....-....+-.+....+|.+|-.+..++....+...... ...+.+...--.|.+....++++.|++.++.++
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444455677778889999999999999888776532111 112223333345667778899999999999999
Q ss_pred HhCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 395 DCDCHN-----VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 395 ~~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
..-|.+ .-++...|.+.+-+|++++|+...+.+.++
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 987765 366788899999999999999999988876
No 366
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=82.44 E-value=5.7 Score=44.46 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+.+..+...+..+.+.+++++|+..-.+|.-+.......+.. -....|.|++...+..++...|+..+.+++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 345667788889999999999999988887765433222211 1245688899888888899999999998876
Q ss_pred h--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 396 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
+ .|.-+....+++..+..+++++.|+.+++.|+.+.
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5 34444556778888889999999999999998753
No 367
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=82.10 E-value=18 Score=35.61 Aligned_cols=63 Identities=6% Similarity=-0.023 Sum_probs=43.8
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--ccCHHHHHHHHH
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LKDYQGAIELCS 391 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~Ai~~~~ 391 (437)
......+..+|+..+|..|...|.+++........ .-....+.+++.+|.. .-+|++|.++++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~----------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVN----------HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhh----------hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44455777899999999999999999987432110 1123445566666554 667888888887
No 368
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.85 E-value=6.4 Score=31.33 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCC
Q 013755 373 SAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQN 434 (437)
Q Consensus 373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n 434 (437)
+|.-++..|++-+|++..+..+...+++. -.+...|.++..+.. .-.|++.|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 57788999999999999999999988776 445556777766543 345788888888887754
No 369
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=81.80 E-value=12 Score=27.56 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 350 (437)
+..+..+..+|...=+.|+|++|..+|..+++.+-.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356777888888888999999999999999997643
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.63 E-value=15 Score=35.37 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 383 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+..+..+++||+.+|++...+..+=.+..++.+-++..+-+++++..+|++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh
Confidence 56778899999999999999998888888889999998999999999998764
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.55 E-value=10 Score=33.76 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhccHHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH----NVKALYRRAQAYMEIADLILAE 421 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~----~~~a~~~~g~~~~~lg~~~~A~ 421 (437)
.+.+.||.-|. ..+.++|+..+.++|++.+. |+..+..++.+++.+++++.|-
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666776565 67889999999999998543 5899999999999999999884
No 372
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.88 E-value=3.5 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.052 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 350 (437)
..+..+..+|...=..|+|++|+++|.+|++.+-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 46777888888888999999999999999998744
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.80 E-value=9.5 Score=28.08 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=23.9
Q ss_pred hhhHHHHHHhccCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSK-------VLDCDCHNVKALYRRAQAYM 412 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~-------al~~~p~~~~a~~~~g~~~~ 412 (437)
+..+|.-+-+.|++.+|+.+|++ ++...|+++.....+..+..
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 44445555555555555555555 55567888775554444433
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.72 E-value=12 Score=35.39 Aligned_cols=86 Identities=20% Similarity=0.075 Sum_probs=50.0
Q ss_pred hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCH
Q 013755 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
...+..++|..|+..|.++-.... .....+++.+|.. ..++.+|+..|.++.+ ..++
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~~-----------------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~ 109 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELGD-----------------AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLA 109 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcCC-----------------hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccH
Confidence 334455666777776666655211 1335556666554 3446666666663333 3566
Q ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Q 013755 402 KALYRRAQAYME----IADLILAELDIKKAIEA 430 (437)
Q Consensus 402 ~a~~~~g~~~~~----lg~~~~A~~~~~~al~l 430 (437)
.+.+++|..|.. ..++.+|..+|++|.+.
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 677777777665 34667777777776654
No 375
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=79.72 E-value=17 Score=26.47 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
+..+..+...|...=..|+|++|+.+|..|+..+-
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLL 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34566777888888899999999999999999764
No 376
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.03 E-value=19 Score=26.29 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
+..+..+...|..+=..|+|++|+.+|.+|++.+-
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45677788888888899999999999999999764
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=27 Score=32.86 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=55.1
Q ss_pred HHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 360 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
+...-++..+-+.+...|++.++|.+|+....-.+.- .|+-...+..-.++|++..+..++.+.+..|-.+
T Consensus 118 Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 118 EKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3445556667778888999999999999988877642 2455678888899999999999988888776543
No 378
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.19 E-value=17 Score=36.50 Aligned_cols=116 Identities=10% Similarity=-0.005 Sum_probs=56.2
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh------H---HHHHHHhhh----------HHHhhhHHHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD------D---EQKLVKSLR----------VSCWLNSAACCL 378 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------~---~~~~~~~~~----------~~~~~nla~~~~ 378 (437)
+...-..-...+..|+.-.|-+....+|+..|.++..-. + ..+....+. ..+.-.+-..++
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 333333444456677777777777777777666653200 0 000000000 001111122233
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
++++|+.|+....-.|.-.-..+..+---|-....+|-+++|..++++.+.++|.
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 4455555555444444443344444433444455566677777777777777664
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.02 E-value=3.7 Score=26.76 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=24.1
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
.++||.+|..+|+++.|....++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36899999999999999999999995
No 380
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.88 E-value=28 Score=37.75 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=69.7
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
+..--.|.....+++++.|+...+.++...|..... .++.++.++|.+..-.|++.+|+.+..++.++.-
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333445677788999999999999999999876533 3578899999999999999999999999988732
Q ss_pred ----CC--HHHHHHHHHHHHHhcc
Q 013755 399 ----HN--VKALYRRAQAYMEIAD 416 (437)
Q Consensus 399 ----~~--~~a~~~~g~~~~~lg~ 416 (437)
-. .-+.+..+.++...|+
T Consensus 529 ~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 529 QHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HcccHHHHHHHHHHHHHHHHHhhH
Confidence 22 3456777888999994
No 381
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.54 E-value=43 Score=33.12 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=45.5
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCC
Q 013755 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA--DLILAELDIKKAIEADPQN 434 (437)
Q Consensus 378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~n 434 (437)
.++.-++.-+.+...+|..+|+.-.+|+.|..++.+.. ++..-++.++++|++||.|
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN 144 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc
Confidence 34445677778888888889988888998888888665 3678888889999988876
No 382
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.26 E-value=12 Score=35.15 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+..+...+..+...++++.++..+++.+...|.+. .+|..+-..|++.|+...|+..|++.-.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E---------------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE---------------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3456677888999999999999999999999988865 5588888899999999999999998765
Q ss_pred h
Q 013755 396 C 396 (437)
Q Consensus 396 ~ 396 (437)
.
T Consensus 216 ~ 216 (280)
T COG3629 216 T 216 (280)
T ss_pred H
Confidence 3
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.57 E-value=8 Score=34.80 Aligned_cols=60 Identities=18% Similarity=0.058 Sum_probs=50.1
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
.+++.+...+|+...+.-++-+|.+......+=+.|.-.|+|++|...++-+-+++|+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456778888999999888999998887777777788888999999999999988888753
No 384
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=76.38 E-value=14 Score=35.48 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=72.9
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
...|..+....+|.-|..+|-+|++-...... .......++ |+-|+.+...+-+--.++-....+++++....
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~----~v~A~~sLK---YMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----DVKALTSLK---YMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCC----cHHHHHHHH---HHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 44566666778999999999999886543221 112222222 44455555444444556777778889888899
Q ss_pred HHHHHHHHHHHH--hccHHHHHHHHHHHHHhCC
Q 013755 402 KALYRRAQAYME--IADLILAELDIKKAIEADP 432 (437)
Q Consensus 402 ~a~~~~g~~~~~--lg~~~~A~~~~~~al~l~P 432 (437)
.|+-..|.++.+ +.+|+.|+..|++=|.-||
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 999999999864 5789999999999888776
No 385
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=27 Score=34.39 Aligned_cols=69 Identities=20% Similarity=0.073 Sum_probs=53.9
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHH--HhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVL--DCDCH--NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al--~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+.+.+.|=.+|+.-+.|++|-+.-.++. +.+.+ .+..+|.+|.+..-..+|..|.++|-+|+...|++.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3445556678888899999988777765 22222 356688999999999999999999999999999753
No 386
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.61 E-value=12 Score=33.31 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHH
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI 387 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai 387 (437)
.++.....|..| ...+-++|+.+|.++|++.+.+..+ ...++..||.+|.++++++.|-
T Consensus 140 t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~-----------n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNF-----------NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHHHhcchhhhh
Confidence 344455555544 4789999999999999998766444 3577899999999999999884
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.55 E-value=9.1 Score=35.53 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=44.9
Q ss_pred hccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 379 KLKDYQGAIELCSKVLDCDCHN----VKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 379 ~~~~~~~Ai~~~~~al~~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
+..+.++|+..|.++|++.+.- .+|+-.+-++++.+++|++-+..|++.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4558999999999999999865 58999999999999999999999888774
No 388
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=74.84 E-value=5.1 Score=44.83 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..+....+.|......+.+.+|.+ ..+++.+..+-. -.++.....+|..||..+.+++++++|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 556777888888888999998888 777777654321 123444578899999999999999999999998864
Q ss_pred h--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 396 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
+ .|+...+|-+++...+...+...|+..+.+++.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 4 2445688899998888889999999999888876
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.69 E-value=12 Score=33.10 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.....++..++.++..| ++..+.+++.++..+|+.++|.....++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 35556677778888888 68999999999999999999999999999999843
No 390
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.67 E-value=25 Score=29.17 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=36.1
Q ss_pred hhhHHHHHH-hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 370 WLNSAACCL-KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 370 ~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
|.++|.-++ ++++-++--+.+...+.-+..++..++.+|.||.++|+..+|-+.+++|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445554333 333433333333344434456789999999999999999999999998865
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.25 E-value=47 Score=31.19 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
.-+-+.+..++-..+|..|+..++++++.+..+....+ ......+++..+..-=-+++..+++|.+++...-+-.+.-.
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee-~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEE-PAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 44455667778889999999999999998854322111 11122334443333233578899999999877655544322
Q ss_pred CC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755 399 HN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436 (437)
Q Consensus 399 ~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 436 (437)
+- +|.+-.--..|.+++++....+.-. +--.+|+|..
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~-~WL~~p~Nq~ 152 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVAS-AWLQDPSNQS 152 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhCcccCC
Confidence 22 3544444445678888876554433 3345777754
No 392
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.55 E-value=34 Score=35.83 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHh
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 347 (437)
+.+..+.+-|..-++..+++.|+++.++|...
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 45667777788888899999999999998875
No 393
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=73.38 E-value=29 Score=31.70 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=56.6
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-HHHHH-HHHHHHHH-hC-CCCHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAI-ELCSKVLD-CD-CHNVKA 403 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai-~~~~~al~-~~-p~~~~a 403 (437)
+|..|+|+.|+....-||+..-..+..- ......+.+.-..+-|....+.|+ ++-.. ..+..+.. .+ |+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 4667899999999999999753333110 001122223333344444555554 11111 11222211 11 344444
Q ss_pred --HHHHHHHHH---------HhccHHHHHHHHHHHHHhCCCC
Q 013755 404 --LYRRAQAYM---------EIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 404 --~~~~g~~~~---------~lg~~~~A~~~~~~al~l~P~n 434 (437)
|-..|..++ ..++...|+.+|++|++++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 444455552 3457889999999999999864
No 394
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=72.93 E-value=14 Score=38.75 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=50.5
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH--------------
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV-------------- 393 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a-------------- 393 (437)
+.+.|+|-.-.++|+..-.-..+ +.+..++.|+|..+..+..|+.|.++|.+.
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD-------------~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le 836 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDD-------------EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLE 836 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHH
Confidence 45567777777666653221111 123355666666666666666666666542
Q ss_pred --------HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 394 --------LDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 394 --------l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
...-|.+.+.+=.+|..+...|.-++|.+.|-+
T Consensus 837 ~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 837 LFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 122366666677777777777777777766544
No 395
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.44 E-value=39 Score=32.58 Aligned_cols=82 Identities=12% Similarity=-0.051 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHH---HH
Q 013755 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRA---QA 410 (437)
Q Consensus 334 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g---~~ 410 (437)
.+..+..|++||+.+|.+. .++..+=.+..+.-+-++..+-.++++..+|++...|...= +.
T Consensus 47 ~E~klsilerAL~~np~~~---------------~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE---------------RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 4667889999999977543 23333334445666888888999999999999876653322 22
Q ss_pred HHHhccHHHHHHHHHHHHHh
Q 013755 411 YMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 411 ~~~lg~~~~A~~~~~~al~l 430 (437)
.+..-.+...+..|.+||..
T Consensus 112 ~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 112 NFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HhccCcHHHHHHHHHHHHHH
Confidence 22233577888888888754
No 396
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=71.89 E-value=20 Score=33.98 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 348 (437)
-++.+..+...|...=+.++|.+|+++|+.||+++
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 56677777788888888899999999999998875
No 397
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=71.64 E-value=49 Score=34.71 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=67.2
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
+...|..|-..|+.+.|...|.+|++..=.. -+.+..+|++-|..-++..+++.|+...++|... |.+
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~-----------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKT-----------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN 457 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence 4456777778888888888888888753111 1224577888888888888888888888888765 222
Q ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 401 -------------------VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 401 -------------------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
.+.|...+.....+|-++.....|++.+.|.
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 2445555555666666777777777777653
No 398
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=14 Score=37.99 Aligned_cols=95 Identities=18% Similarity=-0.021 Sum_probs=68.4
Q ss_pred HhCCcHHH-HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755 329 FKNGKYER-AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (437)
Q Consensus 329 ~~~g~~~~-A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~ 407 (437)
+..+..+. |+..|...+.+.+..+. +. .... ++..+...+....+......++..+|.+..++.++
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~-----------ll-la~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L 107 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPE-----------LL-LAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNL 107 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHH-----------HH-HHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHH
Confidence 33344433 56666666655544431 11 2222 77788888999899999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHH-HHHhCCCCCC
Q 013755 408 AQAYMEIADLILAELDIKK-AIEADPQNRN 436 (437)
Q Consensus 408 g~~~~~lg~~~~A~~~~~~-al~l~P~n~~ 436 (437)
+.++...|....+...+.. |....|+|.+
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~~~~~~~ 137 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWLSPDNAE 137 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence 9999988877776665555 8888888753
No 399
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=27 Score=34.49 Aligned_cols=92 Identities=20% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013755 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSKVLDCDCHNVKALY 405 (437)
Q Consensus 328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--~~~~Ai~~~~~al~~~p~~~~a~~ 405 (437)
..+....+.-+.....+|+.+|... .+|+-+.-++.+.. +|..=++.|+++|+.||.|..+|.
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY---------------~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~ 149 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSY---------------GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH 149 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhH---------------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH
Confidence 3344466777888888888888754 56888888877654 478999999999999999988864
Q ss_pred HHHHHH-HHhcc---HHHHHHHHHHHHHhCCCC
Q 013755 406 RRAQAY-MEIAD---LILAELDIKKAIEADPQN 434 (437)
Q Consensus 406 ~~g~~~-~~lg~---~~~A~~~~~~al~l~P~n 434 (437)
.|-.+. ..... ..+-+++..+++.-+++|
T Consensus 150 YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSN 182 (421)
T KOG0529|consen 150 YRRFVVEQAERSRNLEKEELEFTTKLINDNFSN 182 (421)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHhccchh
Confidence 444433 33333 667778888888777665
No 400
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.90 E-value=95 Score=31.30 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=70.5
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 398 (437)
-.+-.+|-.+-+++++++|...|.+..+-....+. -++-.++.++-.-.+-+++.+.-.......-+..|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f----------~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~ 76 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPF----------LLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG 76 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchH----------HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 34567899999999999999999998876654431 12224455554444455666665555555556678
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKA 427 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 427 (437)
+.+-..+-.|...++.++|.+|++.+..-
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w 105 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVW 105 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888888899999999999999877543
No 401
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.63 E-value=57 Score=32.74 Aligned_cols=102 Identities=13% Similarity=-0.003 Sum_probs=65.5
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC--------------HHH
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--------------YQG 385 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------------~~~ 385 (437)
..+..|..+|-.++|+.|...|+.+.+-...+. .+...+.++--.|.|++.++. ++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk---------aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK---------AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch---------hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 456789999999999999999999988664432 223333444445555555442 334
Q ss_pred HHHHHHHH----HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 386 AIELCSKV----LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 386 Ai~~~~~a----l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
|+..|.++ ......-..+.+..+.++..++.|.+|...+-+....
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 44444442 1111233567778888888999988887776666544
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.41 E-value=14 Score=21.12 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (437)
Q Consensus 381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 409 (437)
++++.|...|++++...|.+...+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788889999999999988887766554
No 403
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=66.96 E-value=22 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013755 386 AIELCSKVLDCDCHNVKALYRRAQAYMEI 414 (437)
Q Consensus 386 Ai~~~~~al~~~p~~~~a~~~~g~~~~~l 414 (437)
.+..+.++|..+|.|..++..|-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 57889999999999999998877766554
No 404
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.12 E-value=91 Score=27.26 Aligned_cols=98 Identities=15% Similarity=0.031 Sum_probs=59.2
Q ss_pred HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH--hC
Q 013755 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD--CD 397 (437)
Q Consensus 320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~ 397 (437)
.....|.....+|+-+.|+..|..+-...+.... .+-.+.+.-|..+...|-|++.....+. |. -+
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-----------~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n 163 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-----------GRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGN 163 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-----------hhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCC
Confidence 3455677788888889999888887664332111 1123344445556666777665443332 22 23
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
|-...+---+|.+-.+.|+|.+|..+|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33345555567777778888888888877654
No 405
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.94 E-value=29 Score=35.44 Aligned_cols=64 Identities=22% Similarity=0.138 Sum_probs=53.5
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCD---CH----NVKALYRRAQAYMEIAD-LILAELDIKKAIEADPQ 433 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~----~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~ 433 (437)
++-+|.|+..+|+...|..++..+++.. -. .|-|+|-+|..|..++. ..+|.+++.+|-+...+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 5567999999999999999999988432 11 26899999999999999 99999999999876533
No 406
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=65.46 E-value=4.9 Score=38.63 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=57.2
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a 403 (437)
.+...++.+.|..|+..-..++...+. ...+|+.++..+..+.++++|++....+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s---------------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERS---------------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccccChh---------------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 444555566666666555555552222 35779999999999999999999999999999998776
Q ss_pred HHHHHHHHHHhccHH
Q 013755 404 LYRRAQAYMEIADLI 418 (437)
Q Consensus 404 ~~~~g~~~~~lg~~~ 418 (437)
.-.+..+.....++.
T Consensus 346 ~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 346 EEELENVRQKKKQYN 360 (372)
T ss_pred HHHHHHhhhHHHHHH
Confidence 666655555554443
No 407
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=65.18 E-value=19 Score=35.67 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCC--------CCH----------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 374 AACCLKLKDYQGAIELCSKVLDCDC--------HNV----------KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 374 a~~~~~~~~~~~Ai~~~~~al~~~p--------~~~----------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
|..++++++|..|.-.|..||++.. ..+ -.--.+..||+.+++.+.|+....+.+.++|.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 4445566677666666666666532 111 113457889999999999999999999999975
No 408
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.16 E-value=37 Score=35.02 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=73.4
Q ss_pred HHHhhHHHh---CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH---
Q 013755 322 KEEGNLLFK---NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD--- 395 (437)
Q Consensus 322 ~~~g~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--- 395 (437)
.+.|..+|+ ...|++|...|.-|....+.+.-. ..-.-..+-+..++.+|.....+|+.+-|-....++|-
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~---~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVL---ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCccee---eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 344555554 346788888888777754321100 00000122345678899999999998877777776652
Q ss_pred --hCC----------------CC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CC
Q 013755 396 --CDC----------------HN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQ-NR 435 (437)
Q Consensus 396 --~~p----------------~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~ 435 (437)
+.| .| ..++|+.-.-+...|-|.-|.++++-.+.++|. ||
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc
Confidence 122 22 256777778888999999999999999999998 65
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.87 E-value=18 Score=36.34 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=28.3
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcc-HHHHH
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKAL--YRRAQAYMEIAD-LILAE 421 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~--~~~g~~~~~lg~-~~~A~ 421 (437)
...++-+++|..+..+++.++|..-..+ |.-..-|+.-|+ |.+|.
T Consensus 401 a~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 448 (831)
T PRK15180 401 ADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAF 448 (831)
T ss_pred HHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHH
Confidence 3456778999999999999987554333 223334555443 45543
No 410
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=64.61 E-value=27 Score=34.96 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--c
Q 013755 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI--A 415 (437)
Q Consensus 338 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l--g 415 (437)
+++|++.++.+.. +....++.+...+..+-.+.+.- +-..|+..|..||+.+|..+.-.++.-+.|... +
T Consensus 291 nqhFQ~~v~sLEe-------e~a~erqqlvetH~~RV~AmlNd-rrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqK 362 (615)
T KOG3540|consen 291 NQHFQKTVSSLEE-------EAARERQQLVETHEARVEAMLND-RRRDALENYLAALQADPPRPHRVLQALKRYVRAEQK 362 (615)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 3456666655432 22222233334444444444332 347899999999999998886555544444433 3
Q ss_pred cHHHHHHHHHHHHHhCCCC
Q 013755 416 DLILAELDIKKAIEADPQN 434 (437)
Q Consensus 416 ~~~~A~~~~~~al~l~P~n 434 (437)
+-.--+..|+..+..||.-
T Consensus 363 dr~HTlrhyqHv~~vDpkk 381 (615)
T KOG3540|consen 363 DRMHTLRHYQHVLAVDPKK 381 (615)
T ss_pred HHHHHHHHHHHHHhcChHH
Confidence 4444678899999988864
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.97 E-value=1e+02 Score=28.02 Aligned_cols=63 Identities=8% Similarity=-0.054 Sum_probs=48.9
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
....+.+.+..++|+...+.-++..|.+.. +...+=..+.-.|+|++|+..|+-+-++.|+..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~---------------~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAG---------------GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcccc---------------chhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678888999999999998888887642 233444566678999999999999999998774
No 412
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.96 E-value=40 Score=28.47 Aligned_cols=66 Identities=6% Similarity=-0.089 Sum_probs=53.5
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
..+..+..+-+...++.++.....-.--+.|+++..-..-|..+...|+|.+|+..|+...+-.+.
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 334455555666889999888887777789999999999999999999999999999987655443
No 413
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=63.92 E-value=37 Score=34.42 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=13.8
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHH
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSK 392 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~ 392 (437)
.|-.||...+.+|+++-|..+|.+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 355555555556666655555554
No 414
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=62.18 E-value=29 Score=33.34 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=50.4
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSKVLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
+-+|+|.+..+..-...++...+-.+.. -..+.-.+--+|..+..+|+-++|...|++|+.+.++..
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 3578888887777777777766554443 123445666789999999999999999999999987654
No 415
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.12 E-value=1.2e+02 Score=31.01 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc-CCCC------------ChHHH----HHHHhhhHHHhhhHHHH--
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSF------------VDDEQ----KLVKSLRVSCWLNSAAC-- 376 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-~~~~------------~~~~~----~~~~~~~~~~~~nla~~-- 376 (437)
..+..-++.+..|-+ .+-+.|+..|.+|+...-. .... -.++. ...+.+....-.+++.+
T Consensus 130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~ 208 (711)
T COG1747 130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLM 208 (711)
T ss_pred hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHH
Confidence 334444455544444 7888888888888875321 1000 00111 12222223333333333
Q ss_pred ------HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------hccHHHHHHHHHHHHHh
Q 013755 377 ------CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME--------------------IADLILAELDIKKAIEA 430 (437)
Q Consensus 377 ------~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~--------------------lg~~~~A~~~~~~al~l 430 (437)
|....+|.+|++.....|++|..+.+|.-++-.-+.. -.+|.+|+.+|++.+.+
T Consensus 209 qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f 288 (711)
T COG1747 209 QDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHF 288 (711)
T ss_pred HHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhee
Confidence 4446789999999999999999998886555444444 45788899999998887
Q ss_pred CCCC
Q 013755 431 DPQN 434 (437)
Q Consensus 431 ~P~n 434 (437)
+..|
T Consensus 289 ~eGn 292 (711)
T COG1747 289 DEGN 292 (711)
T ss_pred ccCc
Confidence 7654
No 416
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=62.11 E-value=54 Score=36.52 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=48.2
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA-------LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a-------~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 435 (437)
|+-.|.+|.++++|.+-++++..|++..|+++.. .||+-.+.+.. ...|....--++.+.|.+.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccc
Confidence 7778999999999999999999999999998744 34554444432 3446677777777777653
No 417
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.77 E-value=97 Score=28.88 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCH-HHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY-QGAIELCSKVL 394 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~-~~Ai~~~~~al 394 (437)
+..+.++.-+..+++.+++.-|..+-.-.++.........+++ ..-++..+......- ..-.+..++|+
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~----------~~~rl~~l~~~~~~~~p~r~~fi~~ai 77 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE----------SIARLIELISLFPPEEPERKKFIKAAI 77 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH----------HHHHHHHHHHHS-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 4556667777888899999888887766666654332111111 122444444333221 12344555555
Q ss_pred HhC------CCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 013755 395 DCD------CHNVKALYRRAQAYMEIADLILAELDIK 425 (437)
Q Consensus 395 ~~~------p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 425 (437)
+.. -.++..+..+|..|.+.+++.+|..+|-
T Consensus 78 ~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 78 KWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 543 2457889999999999999999988774
No 418
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=61.72 E-value=59 Score=23.98 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 013755 383 YQGAIELCSKVLDCDCHNVK 402 (437)
Q Consensus 383 ~~~Ai~~~~~al~~~p~~~~ 402 (437)
|.+|++.+.+++...|+...
T Consensus 29 Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHHHhhCCCHHH
Confidence 44555555555666775543
No 419
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.50 E-value=26 Score=38.60 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=58.0
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
...-|+.+|..+.|+.|.-+|...- -|..||..+..+|+|+.|++..++|-.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vS-----------------------N~a~La~TLV~LgeyQ~AVD~aRKAns----- 1248 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVS-----------------------NFAKLASTLVYLGEYQGAVDAARKANS----- 1248 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHHHHhhhccc-----
Confidence 3456888888888888887776532 256788888899999999998888732
Q ss_pred HHHH------------HHHHH------------------HHHHhccHHHHHHHHHHHHHhC
Q 013755 401 VKAL------------YRRAQ------------------AYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 401 ~~a~------------~~~g~------------------~~~~lg~~~~A~~~~~~al~l~ 431 (437)
.+.| ||+|+ -|...|-|++-+..++.+|-++
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 2222 33333 3566677777777777777554
No 420
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.45 E-value=94 Score=31.10 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHH------HHH
Q 013755 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ------GAI 387 (437)
Q Consensus 314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~------~Ai 387 (437)
.+-.+..+++.|..+++...|.+|+..+-.|=+.+..... ..-+.-.-.+.+.+-+-.||+.+++.. .-+
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~----klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDS----KLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhH----HHHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 3455677899999999999999999888777665432210 000011111222333456787766531 222
Q ss_pred HHHHHHHHh------------C-CCC-HHH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 388 ELCSKVLDC------------D-CHN-VKA-----LYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 388 ~~~~~al~~------------~-p~~-~~a-----~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
..|++.+.. . +.. .+| +...|...+..|+-++|.++|+.|..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 333333322 1 111 133 44568889999999999999998864
No 421
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=60.86 E-value=13 Score=37.88 Aligned_cols=66 Identities=14% Similarity=-0.008 Sum_probs=49.6
Q ss_pred HHHHHhhHHHhC---CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 320 RKKEEGNLLFKN---GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 320 ~~~~~g~~~~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
.+-+++..++++ |+.-.|++....|++++|.. ..+++.|+.|+..++++.+|+++..-+...
T Consensus 410 ~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~---------------~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 410 LLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI---------------QKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH---------------HHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 344555556554 46677888888888887653 377999999999999999999977766666
Q ss_pred CCCC
Q 013755 397 DCHN 400 (437)
Q Consensus 397 ~p~~ 400 (437)
.|.+
T Consensus 475 ~Ptd 478 (758)
T KOG1310|consen 475 FPTD 478 (758)
T ss_pred Cchh
Confidence 7744
No 422
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.78 E-value=50 Score=26.06 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=41.0
Q ss_pred HhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 013755 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD 416 (437)
Q Consensus 363 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~ 416 (437)
+.-+....+..|...+-.|+|..|.+...++-+..+...-.|..-|++-..+|+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344455567788888999999999999999988766656666666777776664
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.20 E-value=62 Score=31.14 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=36.5
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHH
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--VKALYRRAQAYMEIADLILA 420 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~~A 420 (437)
-+-..||.|..++|+..+|++.++...+-.|-. ...+-++-.+++++.-|.+.
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578999999999999999999887776632 23344555555555555443
No 424
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.11 E-value=45 Score=31.49 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=52.1
Q ss_pred ccCCCCCChHHHHHHH--HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc
Q 013755 303 EKVPWEMNNQGKIEAA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (437)
Q Consensus 303 ~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 380 (437)
....|.-...+.++.. ..+...+..|...|.+.+|++..++++.++|-+. ..+.-+-..+..+
T Consensus 262 ~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e---------------~~nk~lm~~la~~ 326 (361)
T COG3947 262 ADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE---------------QDNKGLMASLATL 326 (361)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh---------------HHHHHHHHHHHHh
Confidence 3445665555544433 2334567778899999999999999999987543 2344556677788
Q ss_pred cCHHHHHHHHHH
Q 013755 381 KDYQGAIELCSK 392 (437)
Q Consensus 381 ~~~~~Ai~~~~~ 392 (437)
|+--.|+++|++
T Consensus 327 gD~is~~khyer 338 (361)
T COG3947 327 GDEISAIKHYER 338 (361)
T ss_pred ccchhhhhHHHH
Confidence 887777777765
No 425
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=59.91 E-value=26 Score=21.28 Aligned_cols=29 Identities=28% Similarity=0.110 Sum_probs=17.5
Q ss_pred HHHHHHH--HHHHHhc-----cHHHHHHHHHHHHHh
Q 013755 402 KALYRRA--QAYMEIA-----DLILAELDIKKAIEA 430 (437)
Q Consensus 402 ~a~~~~g--~~~~~lg-----~~~~A~~~~~~al~l 430 (437)
.|.+++| .+|..-. ++++|+.+|++|-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5666777 4443332 467777777777654
No 426
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.03 E-value=18 Score=35.89 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
......+.-.|+|..|++..... ++.... -......-.+.+++.+|-||+.+++|.+|++.+..+|-.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~------l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKG------LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-Ccccch------hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455668888887754431 111100 001111223577899999999999999999999998753
No 427
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.62 E-value=52 Score=26.82 Aligned_cols=66 Identities=17% Similarity=-0.029 Sum_probs=51.3
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhccHHHHHHHHHHH----HHh
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHN---------------VKALYRRAQAYMEIADLILAELDIKKA----IEA 430 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~lg~~~~A~~~~~~a----l~l 430 (437)
+.++|...++.+++-.++-+|++|+.+..+- +-...|+|.-+..+|+-+-.+++++-| +.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999998753211 233578999999999999999988754 556
Q ss_pred CCCCC
Q 013755 431 DPQNR 435 (437)
Q Consensus 431 ~P~n~ 435 (437)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 66654
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.85 E-value=38 Score=28.38 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla 374 (437)
...+...+..++..|+|+-|+.+...++...|++. +.+.+++.++-.+|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~--------~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE--------EARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH--------HHHHHHHHHHHHHH
Confidence 35667889999999999999999999999887643 34455555554444
No 429
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.64 E-value=54 Score=32.21 Aligned_cols=47 Identities=19% Similarity=0.057 Sum_probs=42.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
....-+|+-..+.++..+|.|....+.+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45577899999999999999999999999999999999999998864
No 430
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=56.62 E-value=2e+02 Score=27.99 Aligned_cols=69 Identities=22% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 361 LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD----CD--CHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 361 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
...-++..+-..|...|+..++|.+|+......+. +| +.-...+..-.++|+.+.+..+|...+-.|-.
T Consensus 122 kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 122 KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 34445566677889999999999999999888764 23 23357788889999999999999988876653
No 431
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.35 E-value=88 Score=34.85 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=49.7
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
..+|..+|.+.++.+...+|++.|-+| +++..|...-.+....|.|++-+.++..|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 467999999999999999999999665 5778888888888899999998888877754
No 432
>PF12854 PPR_1: PPR repeat
Probab=55.95 E-value=31 Score=20.74 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755 400 NVKALYRRAQAYMEIADLILAELDIKK 426 (437)
Q Consensus 400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~ 426 (437)
|.-.|..+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445566666677777777777776654
No 433
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.41 E-value=98 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.1
Q ss_pred HHHhCCcHHHHHHHHHHHHHhhccC
Q 013755 327 LLFKNGKYERAGKKYNKAADCVSED 351 (437)
Q Consensus 327 ~~~~~g~~~~A~~~y~~al~~~~~~ 351 (437)
.+.+.|+|+.|+..|.+|..+....
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999987553
No 434
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=54.96 E-value=26 Score=20.72 Aligned_cols=28 Identities=39% Similarity=0.209 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHh----ccHHHHHHHHHHHHH
Q 013755 402 KALYRRAQAYMEI----ADLILAELDIKKAIE 429 (437)
Q Consensus 402 ~a~~~~g~~~~~l----g~~~~A~~~~~~al~ 429 (437)
.+.+++|.+|..- .+..+|..+|++|-+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3555666655432 256666666666654
No 435
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.69 E-value=27 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=13.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHH
Q 013755 372 NSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+.|.-+-+.|+|++|+.+|.++++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444455666666666666554
No 436
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=53.18 E-value=21 Score=20.19 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=15.9
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
|+.+-.+|.+.+++++|.+.+++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666665443
No 437
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.14 E-value=50 Score=30.31 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCChHHHHHHHhhhHHHhhhHHHHHH-hccCHHHHHHHHHHHHHh
Q 013755 334 YERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCL-KLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 334 ~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~ 396 (437)
-++|...|++|+.+... .+.. ..++..+.+|.+..|+ -+++.++|++.+++|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~--------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT--------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT--------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC--------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 37899999999998755 2222 2556677788887664 489999999999988753
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.44 E-value=71 Score=34.55 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (437)
Q Consensus 317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 349 (437)
....++..|+.+|++|+|++|+..|-+++....
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 345677889999999999999999999998653
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.30 E-value=1.3e+02 Score=24.53 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=61.3
Q ss_pred HHHHHHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 318 AGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 318 ~~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
-..+..--...+-. +.-..-...+++++.....+.....+. -++.+-.-|...-+ .+.+.|......
T Consensus 25 w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~----------RylkiWi~ya~~~~--~~~~if~~l~~~ 92 (126)
T PF08311_consen 25 WLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDE----------RYLKIWIKYADLSS--DPREIFKFLYSK 92 (126)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-H----------HHHHHHHHHHTTBS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCH----------HHHHHHHHHHHHcc--CHHHHHHHHHHc
Confidence 33333333333333 444555677888888876654332211 14444444544444 777777776654
Q ss_pred C--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 397 D--CHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 397 ~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
. -..+..|-..|..+...|++++|.+.|++++
T Consensus 93 ~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 93 GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3 4557778888999999999999999999875
No 440
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.24 E-value=26 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
..+...|.-.-+.++|++|+..|..+|+.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556677777789999999999988765
No 441
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.20 E-value=1.3e+02 Score=28.16 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=43.6
Q ss_pred HhhhHHHHHHhccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 369 CWLNSAACCLKLKDYQ-GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~-~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
+|.-+-.+...++++. .-+..+..+|..|.+|--|+..|--++...+.|+.-+++....|+.|--|
T Consensus 114 vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 114 VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 3444444444555655 66777777777777777777777777777777777777777777665433
No 442
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.43 E-value=39 Score=24.95 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=23.6
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
+.-+...|.-+-+.|+|++|+.+|..+++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667777788889999999999888763
No 443
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.26 E-value=1e+02 Score=26.19 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC-CCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
.........++.+++.|+.+.|.+.++-+-.-..... ... --......+.|..++..|++.+|-..+..++
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP--------L~~~~~av~~A~~ll~~~k~~eA~~aL~~A~ 144 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP--------LAQTPAAVKQAAALLDEGKYYEANAALKQAL 144 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE--------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC--------HHhhHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4567778899999999999999998876543211000 000 0012335688889999999999999888887
Q ss_pred H
Q 013755 395 D 395 (437)
Q Consensus 395 ~ 395 (437)
.
T Consensus 145 ~ 145 (155)
T PF10938_consen 145 D 145 (155)
T ss_dssp H
T ss_pred c
Confidence 4
No 444
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=49.06 E-value=66 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (437)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 348 (437)
.+..+...-+..+..+..+|..++..|+.+.|--+|.+.+.+.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999876
No 445
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.06 E-value=69 Score=25.26 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 348 (437)
...+.+++.....+|...+-.|+|..|.+...++-+..
T Consensus 52 ~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 52 RRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34567888888999999999999999999999997663
No 446
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.27 E-value=54 Score=26.63 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 350 (437)
.+++..-.......|..+...|++++|..+|-+||...|.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3445555667788999999999999999999999999775
No 447
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.21 E-value=33 Score=33.27 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=44.3
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLDCDC--------HNVKALYRRAQAYMEIADLILAEL 422 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p--------~~~~a~~~~g~~~~~lg~~~~A~~ 422 (437)
+...|+-++.++++++|...+..|..+.. .+..++|..|.+++.+++++.++-
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55678888899999999999999987632 346899999999999999887764
No 448
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.35 E-value=33 Score=25.51 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=15.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
.+.|.++-..|+.++|+.+|++++..
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34555555556677777777766653
No 449
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=46.29 E-value=1.6e+02 Score=26.04 Aligned_cols=56 Identities=23% Similarity=0.054 Sum_probs=40.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhC
Q 013755 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI----ADLILAELDIKKAIEAD 431 (437)
Q Consensus 374 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l----g~~~~A~~~~~~al~l~ 431 (437)
+..+..+.+.++|+++.-+|.+++ ++.+.-+..+.|..- .+.++|..+-++|+++.
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 334455578899999999999885 677777777766432 25788888888888763
No 450
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.24 E-value=2.7e+02 Score=26.88 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (437)
Q Consensus 310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~ 389 (437)
++++. .+......|..|-+.++|..|.+.+.. .|.+.. ....-.+.+...+..+|..|++.++-.+|..+
T Consensus 97 sfeEq--v~~irl~LAsiYE~Eq~~~~aaq~L~~----I~~~tg----~~~~d~~~kl~l~iriarlyLe~~d~veae~~ 166 (399)
T KOG1497|consen 97 SFEEQ--VASIRLHLASIYEKEQNWRDAAQVLVG----IPLDTG----QKAYDVEQKLLLCIRIARLYLEDDDKVEAEAY 166 (399)
T ss_pred cHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhc----cCcccc----hhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44443 445566789999999999998765432 222221 11112234567788999999999999999999
Q ss_pred HHHHH--HhCCCCHHHHHH----HHHHHHHhccHHHHHHHHHHHH
Q 013755 390 CSKVL--DCDCHNVKALYR----RAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 390 ~~~al--~~~p~~~~a~~~----~g~~~~~lg~~~~A~~~~~~al 428 (437)
.+++- ..+..|...... .|.++-..++|-+|...|.+..
T Consensus 167 inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 167 INRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98873 334456544322 3445556677777666655544
No 451
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.64 E-value=2e+02 Score=29.68 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 401 (437)
...+..+.-.|+-+.|+..++.++. ...+++..-+++.+|.++.-+.+|.+|-.++....... +..
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS 336 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWS 336 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhh
Confidence 4455666666776667777776665 13456667789999999999999999999999887765 455
Q ss_pred HHHHH--HHHHH
Q 013755 402 KALYR--RAQAY 411 (437)
Q Consensus 402 ~a~~~--~g~~~ 411 (437)
.|+|. .|.|+
T Consensus 337 ~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 337 HAFYTYFAGCCL 348 (546)
T ss_pred HHHHHHHHHHHH
Confidence 66544 34454
No 452
>PHA02122 hypothetical protein
Probab=43.84 E-value=39 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.5
Q ss_pred CCCCEEEEEEEEEEcCCcEEe
Q 013755 63 EFGDEVTIHYVGTLLDGTKFD 83 (437)
Q Consensus 63 ~~gd~V~v~y~~~~~~G~~~~ 83 (437)
..||.|.|+|.... +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 46899999999887 888764
No 453
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=43.77 E-value=91 Score=31.63 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHhhhHH-HhhhHH-HHHHhccCHHHHHH
Q 013755 357 DEQKLVKSLRVS-CWLNSA-ACCLKLKDYQGAIE 388 (437)
Q Consensus 357 ~~~~~~~~~~~~-~~~nla-~~~~~~~~~~~Ai~ 388 (437)
..|..+-+.... -.+.+| .||.+.++|+.-.-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~l 381 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLL 381 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHH
Confidence 445444443332 123333 46777777766543
No 454
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=43.69 E-value=59 Score=30.25 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=60.2
Q ss_pred HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC------
Q 013755 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN------ 400 (437)
Q Consensus 327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~------ 400 (437)
.++..++.-.|+..|...+.-.|.+-..-.... .-.-..+.....|+. --...-|.+..++||-.....
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a----~~lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~I 78 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKA----ACLEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSKI 78 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehh----hhHHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCccee
Confidence 445556666778888777765554321100000 000012223333332 223466888888888654322
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 401 VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
--.-++++.+|+.+.+|+.|..+|.+|+.+-
T Consensus 79 G~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~ 109 (368)
T COG5091 79 GLVNFRYFVHFFNIKDYELAQSYFKKAKNLY 109 (368)
T ss_pred eeehhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 2346889999999999999999999999874
No 455
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.62 E-value=1.2e+02 Score=21.98 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhCCC
Q 013755 383 YQGAIELCSKVLDCDCH 399 (437)
Q Consensus 383 ~~~Ai~~~~~al~~~p~ 399 (437)
|.+|++.|.+++...|+
T Consensus 29 Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 29 YQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 44555555555556664
No 456
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=43.47 E-value=53 Score=18.93 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred HhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 369 CWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 369 ~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
.|..+-.++.+.|+++.|...++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355666777778888887777766544
No 457
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.40 E-value=47 Score=19.04 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=16.2
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
|+.+=.+|.+.+++++|++.+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566677777777777766543
No 458
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.22 E-value=2.2e+02 Score=26.03 Aligned_cols=68 Identities=13% Similarity=-0.014 Sum_probs=40.1
Q ss_pred HHhhhHHHhhhHHHHHHh---ccCHHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHH-HHhccHHHHHHHHHHHHH
Q 013755 362 VKSLRVSCWLNSAACCLK---LKDYQGAIELCSKVLD-----CDCHNVK---ALYRRAQAY-MEIADLILAELDIKKAIE 429 (437)
Q Consensus 362 ~~~~~~~~~~nla~~~~~---~~~~~~Ai~~~~~al~-----~~p~~~~---a~~~~g~~~-~~lg~~~~A~~~~~~al~ 429 (437)
..+++...|..++.+... ..--++|...|++|++ +.|.++- ...+.+.-| .-+++.++|++..++|+.
T Consensus 118 y~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 118 YYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444322 1123678888888875 4677763 334555544 458999999988887764
No 459
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.22 E-value=1.1e+02 Score=28.98 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=65.5
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH-hCCCC
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD-CDCHN 400 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-~~p~~ 400 (437)
...|.......+|.-|-.+|-+|++-..... .+.+....++ |+-|+.......+--+|+-.-..+++ ++...
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft~l~----~d~kAc~sLk---YmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~ 282 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFTLLK----MDVKACVSLK---YMLLSKIMLNRREEVKAVLRNKNTLKHYDDRM 282 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcccccc----chHHHHHHHH---HHHHHHHHHhhHHHHHHHHccchhHhhhhhhh
Confidence 3345556677899999999999988654322 1122333333 44455555444444445544555555 56666
Q ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCC
Q 013755 401 VKALYRRAQAYM--EIADLILAELDIKKAIEADP 432 (437)
Q Consensus 401 ~~a~~~~g~~~~--~lg~~~~A~~~~~~al~l~P 432 (437)
..|+...+.++- .+.+|..|++.|+.-+.-||
T Consensus 283 I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 283 IRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 788888888874 45688999998887776554
No 460
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.69 E-value=1.3e+02 Score=29.39 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (437)
Q Consensus 313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~ 389 (437)
.+-..+..+...|+.++..++|++|...|..|..+......- -......+++..|..+++++++..++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge-------~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGE-------KHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788899999999999999999999999999986532211 1111234455666666666666555443
No 461
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.61 E-value=69 Score=27.97 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=41.6
Q ss_pred hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013755 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI 414 (437)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l 414 (437)
.++..+.-.||.+-++.|+|.+|.+.|.++.. |.+.+...-+++++.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 34667778899999999999999999998777 667788888888887654
No 462
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=41.84 E-value=48 Score=32.69 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHH
Q 013755 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD------------LILAELDIKKAIE 429 (437)
Q Consensus 383 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~------------~~~A~~~~~~al~ 429 (437)
...|+.++++|-. .+.|..|.+.|.++..+|+ |.+|...+++|-.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 5667777777766 4568899999999999887 5667777777654
No 463
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.65 E-value=2.2e+02 Score=34.82 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=60.1
Q ss_pred hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (437)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~ 431 (437)
.....+|++.|....+.|+++.|-.+.-.|.+.. -+.++.-+|+.+-..|+-..|+..+++.+.++
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4467899999999999999999999999999887 57899999999999999999999999999664
No 464
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.52 E-value=2.3e+02 Score=28.27 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+++.-++-.|....-+.+|..|.+++.+|+...|...... .+..+...+..+-.-+|++.+-.-+++..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alG---------f~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALG---------FRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhh---------HHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 6677888888888888889999999988888887643221 1111222222233445666554444433332
Q ss_pred hCCCCHHHHHHHHHHH--HHhccHHHHHHHHHHHHHh
Q 013755 396 CDCHNVKALYRRAQAY--MEIADLILAELDIKKAIEA 430 (437)
Q Consensus 396 ~~p~~~~a~~~~g~~~--~~lg~~~~A~~~~~~al~l 430 (437)
. ....||.+.++- -.+.+|.+-++.|+.-+..
T Consensus 316 k---sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~ 349 (493)
T KOG2581|consen 316 K---SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQA 349 (493)
T ss_pred H---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 2 234566665553 3445566666666555443
No 465
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.04 E-value=1.7e+02 Score=28.40 Aligned_cols=116 Identities=11% Similarity=0.014 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHH-HHhhhH-HHhhhHHHHHHhccCHHHHHHH--H
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL-VKSLRV-SCWLNSAACCLKLKDYQGAIEL--C 390 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~-~~~~~~-~~~~nla~~~~~~~~~~~Ai~~--~ 390 (437)
.+......-.|..|+...+++.|.--|++|+..-.....+..++.+. .+++.. ..--|++....+ -.++++. .
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae---~s~~i~n~Y~ 198 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAE---VSEILNNTYS 198 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHH
Confidence 45566677788889999999999988888887643222111111111 111111 011122222211 1112111 0
Q ss_pred HHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755 391 SKVLDC----DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (437)
Q Consensus 391 ~~al~~----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 433 (437)
.-+++. +-.|+-+-|++|..+..-+++.++...+..++-+.|+
T Consensus 199 ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 199 NYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 111111 2245777888888888888999998888888877765
No 466
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=40.72 E-value=52 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCc
Q 013755 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTG 99 (437)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~ 99 (437)
.+++.|+.+.+..+.++.+|..+.. .||.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 5688999999999999998877643 5677766643
No 467
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.67 E-value=1.1e+02 Score=29.48 Aligned_cols=66 Identities=23% Similarity=0.187 Sum_probs=49.2
Q ss_pred HHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--------VKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 362 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--------~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
..+..+.+...||..|.+.++|..|.+.. .++.++-.. ...+.++|.+|++.++-.+|..+..++-
T Consensus 98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 98 FEEQVASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455678889999999999999986654 234443311 2346889999999999999999888874
No 468
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=39.90 E-value=76 Score=30.33 Aligned_cols=73 Identities=11% Similarity=0.204 Sum_probs=52.4
Q ss_pred HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhh-HHHHHHhccCHHHHHHHHHHHHHhCCCCHH
Q 013755 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN-SAACCLKLKDYQGAIELCSKVLDCDCHNVK 402 (437)
Q Consensus 324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 402 (437)
-++-..+.+-|.+--..|.+++...|.+.+. |.- -+.-+...++++.|...+.++|.++|.+++
T Consensus 113 y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdl---------------WI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 113 YAAYVIKKKMYGEMKNIFAECLTKHPLNVDL---------------WIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcee---------------eeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3344445567777888899999998876533 433 334566788999999999999999999986
Q ss_pred HH---HHHHHHH
Q 013755 403 AL---YRRAQAY 411 (437)
Q Consensus 403 a~---~~~g~~~ 411 (437)
.| +++-..|
T Consensus 178 iw~eyfr~El~y 189 (435)
T COG5191 178 IWIEYFRMELMY 189 (435)
T ss_pred HHHHHHHHHHHH
Confidence 64 4444443
No 469
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.72 E-value=3.7e+02 Score=33.09 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
..++.+.+.|...-+.|+++.|-...-.|.+... ..++..+|..+.+.|+-..|+...++.++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-----------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL-----------------PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-----------------chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3445566667777778888888777777766542 36688999999999999999999999997
Q ss_pred hC-CC----------CH------HHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCCC
Q 013755 396 CD-CH----------NV------KALYRRAQAYMEIADL--ILAELDIKKAIEADPQN 434 (437)
Q Consensus 396 ~~-p~----------~~------~a~~~~g~~~~~lg~~--~~A~~~~~~al~l~P~n 434 (437)
.+ |+ .. ++.+..+.-..+.+++ .+-+..|+.|.++.|..
T Consensus 1731 ~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1731 KNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 64 22 11 2344444444444543 33567888888888843
No 470
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.74 E-value=86 Score=29.36 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=37.5
Q ss_pred hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+..+.++|+..|++.+++.+.-... -..++-.+-.+++++++|++-+..|.+.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeW-----------GFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEW-----------GFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchh-----------HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4457899999999999987554322 123344555667777777777777776664
No 471
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=38.51 E-value=1.4e+02 Score=28.80 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=49.3
Q ss_pred hHHHhhhHHHHHHhccCHHHHHHHHHH--HHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 366 RVSCWLNSAACCLKLKDYQGAIELCSK--VLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~--al~~--~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
....++..|.-.+..|+|..|-.+.-. ++-- ++++..|++..=..-..+.+|+-|++++.+.-+.
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456788999999999999998776544 3433 3456677777766667789999999999887654
No 472
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.37 E-value=3e+02 Score=28.28 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-HHHHHHHHHHHHHhCCCCHHHH
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVLDCDCHNVKAL 404 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai~~~~~al~~~p~~~~a~ 404 (437)
+.|.+--..|.++|...|++++ +|.--|.-.+.-+. .+.|...+.++|..+|++++.+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~d---------------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPD---------------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCch---------------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 3477778889999999888763 35555554444443 8999999999999999998654
No 473
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.24 E-value=2.1e+02 Score=27.39 Aligned_cols=70 Identities=23% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 013755 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKAL-YRRAQAYM 412 (437)
Q Consensus 334 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~-~~~g~~~~ 412 (437)
.++||.+-.+|+..+... .++-|.-+ |.-|++||..+|++..++.++- ..+++|+.
T Consensus 7 l~kaI~lv~kA~~eD~a~------------------nY~eA~~l-----Y~~aleYF~~~lKYE~~~~kaKd~IraK~~E 63 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAK------------------NYEEALRL-----YQNALEYFLHALKYEANNKKAKDSIRAKFTE 63 (439)
T ss_pred HHHHHHHHHHHhhhcchh------------------chHHHHHH-----HHHHHHHHHHHHHhhhcChhHHHHHHHHHHH
Confidence 467888888887754321 12222222 6778888888888887776553 45678888
Q ss_pred HhccHHHHHHHHHH
Q 013755 413 EIADLILAELDIKK 426 (437)
Q Consensus 413 ~lg~~~~A~~~~~~ 426 (437)
.+.+-++-..+++.
T Consensus 64 YLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 64 YLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777666666554
No 474
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.60 E-value=71 Score=33.93 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=36.9
Q ss_pred HHHhccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 376 CCLKLKDYQGAIELCSKVLDCD--CHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
.+.++|+|-...+.++..-.-+ ..-..|+.++|..+..+.+|++|.++|.++-
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556777777665554322111 1225789999999999999999999998763
No 475
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.55 E-value=75 Score=33.15 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
+.+++|+++.|.+...+ .++..=|-.+|.+.+..+++..|.++|.+|..+
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34566777766553322 245555777777777778888887777776543
No 476
>PF13041 PPR_2: PPR repeat family
Probab=37.51 E-value=1.1e+02 Score=19.72 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (437)
Q Consensus 368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 396 (437)
..|+.+=.+|.+.|++++|++.+++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 44667777888999999999999998865
No 477
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=37.36 E-value=94 Score=30.69 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhccC--CCCChHHHHHHHhhhHHHhhhHHHHHHhc---------cCHHHHHHHHHHHHHhCCCCHH
Q 013755 335 ERAGKKYNKAADCVSED--GSFVDDEQKLVKSLRVSCWLNSAACCLKL---------KDYQGAIELCSKVLDCDCHNVK 402 (437)
Q Consensus 335 ~~A~~~y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------~~~~~Ai~~~~~al~~~p~~~~ 402 (437)
..|+..|+.-+...... ......-......-...+++.+|.+|.+. +++..++.+|+.++.....++.
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 56788888888775321 11111111222333457788999998875 6678888888888877655555
No 478
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=36.98 E-value=4.1e+02 Score=26.01 Aligned_cols=146 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCCCceEEEEEEEeeeecc-cCCCCCChHHHHHHHHHHHHHhhHHHhC------------CcHHHHHHHHHHHHHhhcc-
Q 013755 285 IPSCAKLYYEVEMMDFIKE-KVPWEMNNQGKIEAAGRKKEEGNLLFKN------------GKYERAGKKYNKAADCVSE- 350 (437)
Q Consensus 285 ip~~~~l~~~vel~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------g~~~~A~~~y~~al~~~~~- 350 (437)
...++.+...|...+.... ...-.-...-..+.+..+++.|..+.+. ....+|...|++|.-++..
T Consensus 75 ~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l 154 (353)
T cd09243 75 KTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFV 154 (353)
T ss_pred cCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----CCCCChH--HHHHHHhhhHHHhhhHHHHHHhccCHHHHH-----------------HHHHHHHHh----CCCCH--
Q 013755 351 ----DGSFVDD--EQKLVKSLRVSCWLNSAACCLKLKDYQGAI-----------------ELCSKVLDC----DCHNV-- 401 (437)
Q Consensus 351 ----~~~~~~~--~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai-----------------~~~~~al~~----~p~~~-- 401 (437)
.+..... --..+..-...++.+++.+..+.--+.+|+ .+|++|... .+.-.
T Consensus 155 ~e~~l~~l~~~~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~k~k~sliaKLA~q~a~~Y~~A~~~l~~~~~~i~~~ 234 (353)
T cd09243 155 KENYIPKLIEPAEKGSDLDPRVLEAYINQCTAEAQEVTVARAIELKHNAGLISALAYETAKLFQKADDSLSSLDPEYSGK 234 (353)
T ss_pred HHhhcccccccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHcCCccccHH
Q ss_pred --------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 402 --------------KALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 402 --------------~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
-|+|+.|..+...+++-+|+..++.|..+
T Consensus 235 W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~ 277 (353)
T cd09243 235 WRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKL 277 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHH
No 479
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=36.95 E-value=4.3e+02 Score=27.64 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=36.8
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Q 013755 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422 (437)
Q Consensus 376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~ 422 (437)
.--..|++..|...+++..+.-|+...+-++.......+|+.+.+..
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 33446788888888888887778888888888888888888887774
No 480
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.60 E-value=1.5e+02 Score=20.80 Aligned_cols=59 Identities=24% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (437)
Q Consensus 322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~ 389 (437)
...|..+|..|+|-+|-+.++.+-...+.. ...-++.-+....|..+.+.|+..-|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~---------~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP---------ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC---------HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc---------hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 467888999999999999999877643322 11222333344455667788998888764
No 481
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.39 E-value=78 Score=19.08 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755 382 DYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (437)
Q Consensus 382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 409 (437)
+++.|...|++.+...| +++.+.+.|.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 56788888888888876 4677766553
No 482
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.31 E-value=3.6e+02 Score=26.20 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=25.8
Q ss_pred CCHHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755 399 HNVKAL--YRRAQAYMEIADLILAELDIKKAIEADP 432 (437)
Q Consensus 399 ~~~~a~--~~~g~~~~~lg~~~~A~~~~~~al~l~P 432 (437)
.|+..| -|+|.|..++|+..+|++.++...+-.|
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 444444 5679999999999999999887665443
No 483
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=36.18 E-value=1.7e+02 Score=30.36 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=52.5
Q ss_pred HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
+..|+.|-.-+..+ .++++...|++.+...|..+.+|-......+..++|+.-...|.+||.
T Consensus 20 i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 20 IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35566665554444 899999999999999999999999999999999999999999999884
No 484
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.10 E-value=71 Score=23.50 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=17.8
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+...|.-.-..|+|++|+..|..|++
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 44555556667778888887777776
No 485
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=36.07 E-value=1.8e+02 Score=25.74 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh-----cc--CHHHHHHHHHHHHHhCCCCHHHH
Q 013755 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-----LK--DYQGAIELCSKVLDCDCHNVKAL 404 (437)
Q Consensus 332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-----~~--~~~~Ai~~~~~al~~~p~~~~a~ 404 (437)
++...|++.|..|...+. ..+..++++.+.. .. +..+|.+++.++..++ +..+.
T Consensus 87 ~~l~~a~r~~~~aC~~n~-----------------~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aC 147 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACDANI-----------------PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEAC 147 (248)
T ss_pred cCHHHHHHHHHHHhccCC-----------------HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHH
Confidence 467788888887776432 2446667766543 12 2678999999998875 56666
Q ss_pred HHHHHHHHHh
Q 013755 405 YRRAQAYMEI 414 (437)
Q Consensus 405 ~~~g~~~~~l 414 (437)
|++.-.|+.-
T Consensus 148 f~LS~m~~~g 157 (248)
T KOG4014|consen 148 FLLSTMYMGG 157 (248)
T ss_pred HHHHHHHhcc
Confidence 6666655543
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.95 E-value=1.6e+02 Score=31.74 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=58.9
Q ss_pred HHHHhhHHHhCCcHHHHHHHHHHH------HHhhccCCCCChH----HHHHHHhhhHHHhhhHHHHHHhccCHHH-----
Q 013755 321 KKEEGNLLFKNGKYERAGKKYNKA------ADCVSEDGSFVDD----EQKLVKSLRVSCWLNSAACCLKLKDYQG----- 385 (437)
Q Consensus 321 ~~~~g~~~~~~g~~~~A~~~y~~a------l~~~~~~~~~~~~----~~~~~~~~~~~~~~nla~~~~~~~~~~~----- 385 (437)
+-..+..|...|+|+.|.++|.++ +.+........+. +...-.+-.+.+|...|.-+-+.|+|.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 345667777788888888877654 3322222111000 0000111223445555555555555554
Q ss_pred --------HHHHHHHH------HH----hCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755 386 --------AIELCSKV------LD----CDCHN-VKALYRRAQAYMEIADLILAELDIKKAI 428 (437)
Q Consensus 386 --------Ai~~~~~a------l~----~~p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al 428 (437)
|++.|++. |. ..|++ ...+.+.|.-|...|+..+|...|-+|-
T Consensus 848 iti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 848 ITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred EEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 55555542 11 12322 3667888999999999999888777654
No 487
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.59 E-value=49 Score=32.77 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 375 ACCLKLKDYQGAIELCSKVLDCDCHNV-------KALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 375 ~~~~~~~~~~~Ai~~~~~al~~~p~~~-------~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
..|.-+|+| +| -.+.++++|... ..-|..|.+|+.+++|.+|++.|-.+|-
T Consensus 243 R~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 243 RMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 456668884 44 455677777653 2238899999999999999999988773
No 488
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=35.46 E-value=55 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.3
Q ss_pred hHHHHHhcccccCcEEEEEEcCC
Q 013755 248 AGLDRVAATMKKEEWAIVTINHE 270 (437)
Q Consensus 248 ~gl~~~l~~m~~GE~~~i~i~~~ 270 (437)
+-|..|+..|+.||++.+.+.+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 46889999999999999999764
No 489
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=35.38 E-value=1.2e+02 Score=28.05 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCChHHHHHHHhhhHHHhhhHHHHHHh-ccCHHHHHHHHHHHHH
Q 013755 334 YERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLD 395 (437)
Q Consensus 334 ~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~ 395 (437)
-++|...|++|+.+... .+.. ..++..+.+|.+..|+. +++.++|+....+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt--------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT--------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45889999999987543 2211 24456667788777665 6999999987777764
No 490
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=4.7e+02 Score=26.34 Aligned_cols=107 Identities=10% Similarity=-0.088 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (437)
Q Consensus 315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 394 (437)
+..++.+...+..+...++|..|....++++-..... ...+.+..++.-++.++.+-+.--.++...-.++
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~---------~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~ 340 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG---------CNEEMLHSVLLTIAEARESGDTACLNLPLALMFE 340 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Confidence 4556666778888888888888888888876543221 2345567777888888877666555555544444
Q ss_pred Hh----CCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755 395 DC----DCHN--VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (437)
Q Consensus 395 ~~----~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~l 430 (437)
.. +-+. ..+-..++..++.+|..+.|+..++.|+..
T Consensus 341 ~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~ 382 (482)
T KOG4322|consen 341 FKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHL 382 (482)
T ss_pred HHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhH
Confidence 32 2223 344567788889999999999999888753
No 491
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.81 E-value=2.3e+02 Score=29.76 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=42.7
Q ss_pred HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc---CCCCChHH-HHHH-HhhhHHHhhhHH-HHHHhccCHHHHHHHHH
Q 013755 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDE-QKLV-KSLRVSCWLNSA-ACCLKLKDYQGAIELCS 391 (437)
Q Consensus 318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~---~~~~~~~~-~~~~-~~~~~~~~~nla-~~~~~~~~~~~Ai~~~~ 391 (437)
...++..|....+.+++..|.+++.+|-.+..- .....+.+ ...+ ..-+..-.+|+| .||+.+|++++|++.+.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 346777888888888888888888887654211 00001111 1111 111223345666 47888888888766554
Q ss_pred H
Q 013755 392 K 392 (437)
Q Consensus 392 ~ 392 (437)
+
T Consensus 746 ~ 746 (794)
T KOG0276|consen 746 S 746 (794)
T ss_pred h
Confidence 3
No 492
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.34 E-value=1.2e+02 Score=25.70 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhhHHHhCC-cHHHHHHHHHHHHHhhcc
Q 013755 311 NQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSE 350 (437)
Q Consensus 311 ~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~ 350 (437)
.+++..-.......|..+...| ++.+|..+|-+||...|.
T Consensus 83 ~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 83 PSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 4566666777889999999999 999999999999999875
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.99 E-value=1.9e+02 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=31.4
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 013755 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD 416 (437)
Q Consensus 372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~ 416 (437)
..-.++++.|.|++|.+.+++... +|++.+--..+..+-...+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 344578899999999999999988 88877654444444444433
No 494
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=33.79 E-value=3e+02 Score=23.38 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccC----CCCC---------------------hHHHHHHHhhhHHHhhhH
Q 013755 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSED----GSFV---------------------DDEQKLVKSLRVSCWLNS 373 (437)
Q Consensus 319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~----~~~~---------------------~~~~~~~~~~~~~~~~nl 373 (437)
......+......|+.++|.....+|...+... +.+. -.+. -............
T Consensus 3 ~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~-~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 3 MRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD-YVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec-cCChHHHHHHHHH
Confidence 345567778888999999999999988764321 1110 0000 1112223456678
Q ss_pred HHHHHhccCHHHHHHHHHHHHH-hC------C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 374 AACCLKLKDYQGAIELCSKVLD-CD------C-HNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 374 a~~~~~~~~~~~Ai~~~~~al~-~~------p-~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
+.-+++.|+.+.|.+.++-+-. ++ | ........++..++..|++.+|...++.++.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8889999999999887765421 11 1 1135567889999999999999999999874
No 495
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.19 E-value=96 Score=22.43 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=19.3
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (437)
Q Consensus 370 ~~nla~~~~~~~~~~~Ai~~~~~al~ 395 (437)
+.+.|.-.-+.|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566667777888888888887765
No 496
>PRK11619 lytic murein transglycosylase; Provisional
Probab=32.39 E-value=3.2e+02 Score=29.30 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=41.1
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (437)
Q Consensus 377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~ 429 (437)
.+..++|+.+...+...-.-........|.+|.++..+|+.++|...|+++..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34678888777776664333335678899999999999999999999999753
No 497
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=31.50 E-value=4.9e+02 Score=25.17 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHh
Q 013755 383 YQGAIELCSKVLDCDCHN-----------------VKALYRRAQAYMEIA-----DLILAELDIKKAIEA 430 (437)
Q Consensus 383 ~~~Ai~~~~~al~~~p~~-----------------~~a~~~~g~~~~~lg-----~~~~A~~~~~~al~l 430 (437)
|+..+..++.|+..-|.. .-|+..++++|+.++ +|++|+..+++++.-
T Consensus 141 y~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 141 YTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 455666677776643311 245677899999999 899999999999864
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=30.83 E-value=3.8e+02 Score=29.02 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (437)
Q Consensus 399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 434 (437)
.....+.+++.-+...|++++|-+.|-.|++++.-|
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 446778899999999999999999999999998655
No 499
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.09 E-value=2.2e+02 Score=26.03 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.5
Q ss_pred hhhHHHhhhHHHHHH---------hccCHHHHHHHHHHHHHhCCCC
Q 013755 364 SLRVSCWLNSAACCL---------KLKDYQGAIELCSKVLDCDCHN 400 (437)
Q Consensus 364 ~~~~~~~~nla~~~~---------~~~~~~~Ai~~~~~al~~~p~~ 400 (437)
++++.+|-.+|..++ ..++...|+.++++|++++|+-
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 456677777788774 4568899999999999999864
No 500
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.95 E-value=1.7e+02 Score=30.65 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=40.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 013755 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425 (437)
Q Consensus 371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 425 (437)
+..|..+-..++.++|-.+|++.+..+|+ .+++..|+-+.+.|-...|...++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 46 LKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 34455555677788888888888888877 677788888888888888877776
Done!