Query 013757
Match_columns 437
No_of_seqs 297 out of 956
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 3E-56 6.5E-61 436.8 25.6 269 119-428 47-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.3E-52 2.9E-57 396.2 15.0 191 155-355 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 3.5E-48 7.7E-53 363.6 21.9 171 171-358 10-189 (190)
4 PF04431 Pec_lyase_N: Pectate 99.8 6.4E-19 1.4E-23 135.2 5.3 53 25-77 1-56 (56)
5 TIGR03805 beta_helix_1 paralle 98.8 1.2E-06 2.5E-11 88.9 22.4 237 147-402 1-287 (314)
6 PLN02218 polygalacturonase ADP 98.3 2.9E-05 6.3E-10 82.1 16.3 136 195-355 217-356 (431)
7 PF14592 Chondroitinas_B: Chon 98.1 5.3E-05 1.2E-09 79.6 15.1 181 146-334 6-234 (425)
8 PLN02188 polygalacturonase/gly 98.1 0.0001 2.2E-09 77.4 16.0 108 193-321 178-286 (404)
9 PLN03003 Probable polygalactur 98.1 9.7E-05 2.1E-09 78.6 15.7 99 235-337 186-288 (456)
10 PLN02155 polygalacturonase 98.1 0.00011 2.3E-09 77.1 15.6 124 193-337 168-296 (394)
11 PF13229 Beta_helix: Right han 98.0 0.00012 2.6E-09 63.8 11.9 133 195-359 2-138 (158)
12 PLN02793 Probable polygalactur 98.0 0.00015 3.2E-09 77.0 14.8 106 195-321 202-308 (443)
13 PLN03010 polygalacturonase 97.9 0.00048 1.1E-08 72.5 17.5 114 235-356 205-322 (409)
14 PF00295 Glyco_hydro_28: Glyco 97.9 0.00016 3.5E-09 73.5 12.4 150 154-338 90-243 (326)
15 PLN02218 polygalacturonase ADP 97.8 0.0015 3.3E-08 69.3 18.9 136 195-361 194-348 (431)
16 PLN03003 Probable polygalactur 97.7 0.0021 4.6E-08 68.6 17.9 141 157-334 105-261 (456)
17 PF13229 Beta_helix: Right han 97.6 0.0013 2.7E-08 57.2 12.8 131 193-355 23-158 (158)
18 PF05048 NosD: Periplasmic cop 97.6 0.0062 1.3E-07 58.3 17.8 63 238-310 80-142 (236)
19 PLN02155 polygalacturonase 97.6 0.0028 6E-08 66.6 16.4 141 157-334 107-268 (394)
20 TIGR03805 beta_helix_1 paralle 97.5 0.0044 9.5E-08 63.0 16.9 101 236-340 129-247 (314)
21 PLN03010 polygalacturonase 97.5 0.0039 8.4E-08 65.8 17.0 138 195-361 159-313 (409)
22 PF00295 Glyco_hydro_28: Glyco 97.5 0.0015 3.3E-08 66.4 13.1 108 173-310 62-184 (326)
23 TIGR03808 RR_plus_rpt_1 twin-a 97.5 0.0064 1.4E-07 64.6 17.6 115 146-280 56-176 (455)
24 PF12708 Pectate_lyase_3: Pect 97.2 0.023 4.9E-07 52.8 16.9 105 146-266 20-141 (225)
25 PLN02793 Probable polygalactur 97.1 0.01 2.2E-07 63.3 14.6 109 172-310 144-269 (443)
26 PF05048 NosD: Periplasmic cop 97.1 0.009 2E-07 57.2 12.8 132 193-358 35-168 (236)
27 TIGR03808 RR_plus_rpt_1 twin-a 97.1 0.013 2.8E-07 62.4 14.6 158 178-357 121-332 (455)
28 PF01696 Adeno_E1B_55K: Adenov 97.0 0.064 1.4E-06 56.2 18.4 175 147-360 57-242 (386)
29 PLN02188 polygalacturonase/gly 96.9 0.013 2.8E-07 61.8 13.4 168 157-361 114-313 (404)
30 PLN02480 Probable pectinestera 96.7 0.036 7.9E-07 57.4 14.4 127 146-291 62-206 (343)
31 PLN02197 pectinesterase 96.5 0.1 2.3E-06 57.6 17.1 136 99-264 244-410 (588)
32 PF07602 DUF1565: Protein of u 96.3 0.14 3E-06 50.9 14.9 186 146-356 17-240 (246)
33 smart00656 Amb_all Amb_all dom 96.2 0.33 7.2E-06 46.0 16.2 138 174-334 42-188 (190)
34 COG5434 PGU1 Endopygalactoruna 96.0 0.089 1.9E-06 57.5 12.7 102 195-320 263-375 (542)
35 PF12708 Pectate_lyase_3: Pect 95.8 0.066 1.4E-06 49.7 9.4 121 178-314 98-221 (225)
36 PLN02176 putative pectinestera 95.5 0.29 6.3E-06 50.7 13.8 120 146-282 53-189 (340)
37 PLN02416 probable pectinestera 95.3 0.22 4.7E-06 54.6 12.7 113 146-281 244-377 (541)
38 PLN02682 pectinesterase family 94.7 0.51 1.1E-05 49.5 13.1 127 146-291 84-237 (369)
39 PLN02170 probable pectinestera 94.6 0.44 9.6E-06 52.1 12.7 113 146-281 239-373 (529)
40 PLN02432 putative pectinestera 94.4 0.67 1.5E-05 47.1 12.6 121 146-291 25-162 (293)
41 PLN02304 probable pectinestera 94.2 0.86 1.9E-05 48.0 13.3 127 146-291 89-236 (379)
42 PLN02488 probable pectinestera 94.1 0.69 1.5E-05 50.3 12.7 99 146-264 211-330 (509)
43 PLN02773 pectinesterase 93.9 0.89 1.9E-05 46.7 12.6 113 146-281 19-162 (317)
44 PLN02301 pectinesterase/pectin 93.8 0.78 1.7E-05 50.5 12.6 113 146-281 250-383 (548)
45 PLN02634 probable pectinestera 93.7 1.3 2.9E-05 46.3 13.6 127 146-291 70-223 (359)
46 PLN02201 probable pectinestera 93.7 0.86 1.9E-05 49.8 12.7 113 146-281 220-353 (520)
47 PLN03043 Probable pectinestera 93.6 0.98 2.1E-05 49.6 13.0 99 146-264 237-359 (538)
48 PLN02745 Putative pectinestera 93.6 0.98 2.1E-05 50.2 13.0 113 146-281 299-432 (596)
49 COG3420 NosD Nitrous oxidase a 93.6 2.9 6.3E-05 43.6 15.3 93 173-281 100-192 (408)
50 PLN02314 pectinesterase 93.5 0.82 1.8E-05 50.7 12.3 99 146-264 292-411 (586)
51 PLN02313 Pectinesterase/pectin 93.5 0.91 2E-05 50.4 12.6 115 146-280 289-441 (587)
52 PLN02995 Probable pectinestera 93.4 1 2.2E-05 49.5 12.5 116 143-281 231-372 (539)
53 PLN02217 probable pectinestera 93.4 0.93 2E-05 51.0 12.4 144 146-310 264-450 (670)
54 PLN02506 putative pectinestera 93.3 0.98 2.1E-05 49.6 12.4 113 146-281 246-379 (537)
55 PLN02665 pectinesterase family 93.3 1.3 2.8E-05 46.4 12.7 129 146-293 82-230 (366)
56 PLN02933 Probable pectinestera 93.3 1.3 2.8E-05 48.6 13.1 113 146-281 232-365 (530)
57 PLN02916 pectinesterase family 93.3 1.2 2.6E-05 48.5 12.8 113 146-281 201-337 (502)
58 PLN02990 Probable pectinestera 93.1 1.4 3E-05 48.8 13.1 99 146-264 273-393 (572)
59 PLN02708 Probable pectinestera 93.0 1.3 2.8E-05 48.8 12.7 99 146-264 255-376 (553)
60 PLN02484 probable pectinestera 92.7 1.6 3.6E-05 48.4 13.1 112 146-280 286-419 (587)
61 PLN02713 Probable pectinestera 92.6 1.4 3.1E-05 48.6 12.5 99 146-264 264-386 (566)
62 PF14592 Chondroitinas_B: Chon 92.5 0.34 7.3E-06 51.6 7.2 114 235-359 182-323 (425)
63 PLN02671 pectinesterase 92.0 2.6 5.6E-05 44.1 12.9 126 146-291 73-227 (359)
64 PLN02468 putative pectinestera 91.9 1.8 4E-05 47.8 12.1 99 146-264 272-391 (565)
65 PLN02497 probable pectinestera 91.9 3.3 7.2E-05 42.9 13.3 128 146-290 46-190 (331)
66 PF00544 Pec_lyase_C: Pectate 91.7 2.5 5.4E-05 40.3 11.6 131 177-332 51-200 (200)
67 PF01095 Pectinesterase: Pecti 91.6 1.8 3.8E-05 44.1 10.9 123 146-291 14-156 (298)
68 COG5434 PGU1 Endopygalactoruna 89.4 1.9 4E-05 47.5 9.3 133 154-309 236-395 (542)
69 PRK10531 acyl-CoA thioesterase 87.9 11 0.00024 40.4 13.7 103 146-264 96-256 (422)
70 COG3866 PelB Pectate lyase [Ca 86.0 5.5 0.00012 41.0 9.7 118 237-357 116-250 (345)
71 PF08480 Disaggr_assoc: Disagg 86.0 4.4 9.5E-05 38.9 8.5 88 270-359 2-110 (198)
72 PF07602 DUF1565: Protein of u 76.5 18 0.00039 36.1 9.4 71 193-286 114-192 (246)
73 COG3420 NosD Nitrous oxidase a 67.8 59 0.0013 34.3 10.9 41 171-213 45-88 (408)
74 TIGR03804 para_beta_helix para 67.0 8.9 0.00019 27.3 3.6 41 239-281 1-41 (44)
75 PF12541 DUF3737: Protein of u 57.2 1.1E+02 0.0024 31.2 10.4 30 301-334 195-224 (277)
76 PF08480 Disaggr_assoc: Disagg 52.0 1.8E+02 0.0039 28.2 10.5 72 244-316 32-112 (198)
77 PF03211 Pectate_lyase: Pectat 49.9 40 0.00087 33.1 5.9 49 235-284 94-143 (215)
78 PRK10123 wcaM putative colanic 48.6 30 0.00065 35.7 5.0 53 199-262 265-317 (464)
79 PF01696 Adeno_E1B_55K: Adenov 39.3 4.7E+02 0.01 28.0 12.2 96 195-310 138-238 (386)
80 PF07822 Toxin_13: Neurotoxin 39.2 7.6 0.00017 29.4 -0.6 19 92-110 20-38 (55)
81 PF07172 GRP: Glycine rich pro 37.4 11 0.00025 32.2 0.1 13 1-15 1-13 (95)
82 TIGR03804 para_beta_helix para 37.1 68 0.0015 22.6 4.1 42 195-258 1-42 (44)
83 KOG1777 Putative Zn-finger pro 32.2 41 0.00088 36.6 3.1 54 160-216 458-515 (625)
84 PF03211 Pectate_lyase: Pectat 24.0 6.8E+02 0.015 24.7 9.7 50 236-287 74-124 (215)
85 PF03718 Glyco_hydro_49: Glyco 22.9 2.2E+02 0.0048 31.9 6.7 113 200-320 327-453 (582)
86 PLN02698 Probable pectinestera 22.6 2.6E+02 0.0056 30.8 7.2 54 193-264 262-316 (497)
87 COG3458 Acetyl esterase (deace 21.2 58 0.0013 33.5 1.9 18 26-43 21-38 (321)
88 PF12541 DUF3737: Protein of u 21.2 2.8E+02 0.0061 28.3 6.6 12 269-280 193-204 (277)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-56 Score=436.84 Aligned_cols=269 Identities=29% Similarity=0.383 Sum_probs=218.6
Q ss_pred CCCCCCCCcEEEecCCCCCCCCCCCCchHHHHhhcCCCeEEEEeeeeEEeeC------ceeEeccCceEEecCCcceEec
Q 013757 119 GTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLS------EELLITSDKTIDARGSNVQIYN 192 (437)
Q Consensus 119 ~ttGG~gG~vy~VT~~~d~~~~n~~pGtLR~av~~~~P~~IvF~~~g~I~L~------~~L~v~SnkTI~G~ga~i~I~~ 192 (437)
+||||.||++++|++.+| |...++..+|.++|.-+.|+|++. .+|.+.|||||.|.|++.+|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 799999999999999999 788899999985555566999987 567889999999999999999
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEe-eCCceEEEeeeeeec--------CCCCee
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISM-FGASHIWIDHVSMSG--------CQDGLI 263 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI-~gs~nVWIDHcS~s~--------~~Dgli 263 (437)
|.+|.|+.+.|||||||+|++...+ ....|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 9999999999999999999976421 112699999 689999999999999 689999
Q ss_pred eeeeCCeeEEEecceeccCCeeeecCCCCCCC-CCCcceEEEEeeEEcCCCCCCCcccccceEEEEcceEeCccceEEec
Q 013757 264 DAVMGSTAITVSNSHFTHQDHVMLLGASDGHP-QDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGG 342 (437)
Q Consensus 264 Di~~gS~~ITISnn~f~~H~k~mLiG~sds~~-~d~~~~vTi~hN~F~~~~~~R~Pr~R~G~~HvvNN~y~nw~~yaigg 342 (437)
||++++++||||||+|++|+|.+|+|.+|+.. +|++.+||+||||| +++.||+||+|||.+||+||||.....|+++.
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 99999999999999999999999999999854 56899999999999 59999999999999999999999665444444
Q ss_pred CCC--ceEEEEccEEecCCCCCccceeeecCCCCcccccceEecCCceEeecceEeecCCcc-----cc--CCCCCcccC
Q 013757 343 SQH--PTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDV-----RN--VNRQDVIPA 413 (437)
Q Consensus 343 ~~~--~~I~~egN~F~ag~~~~~k~vt~r~~~~~~~~~~~~w~s~gd~~~nGa~f~~sG~~~-----~~--y~~~~~~~~ 413 (437)
.++ ++|++|+|||+....+..---|++. .++|.. -.|++|..++... .. +...++|++
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv 325 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV 325 (345)
T ss_pred eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence 444 9999999999997544221111111 123331 2345554444332 11 556678899
Q ss_pred CCcchHH-HHhcccCC
Q 013757 414 KPGKFAS-QMTRFSGA 428 (437)
Q Consensus 414 ~p~~~v~-~lt~~AG~ 428 (437)
+|.+.|+ .+|++||+
T Consensus 326 d~~~dVks~Vt~yAGa 341 (345)
T COG3866 326 DPPEDVKSFVTNYAGA 341 (345)
T ss_pred CChHHhhhhhhccccc
Confidence 9999997 69999995
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.3e-52 Score=396.21 Aligned_cols=191 Identities=38% Similarity=0.593 Sum_probs=162.2
Q ss_pred CCeEEEEeeeeEEeeCceeEeccCceEEecCCcceEecCceEEEE-eeeeEEEEccEEeeeecCCCCceecCCCCCCCcc
Q 013757 155 RPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQ-FVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRS 233 (437)
Q Consensus 155 ~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~I~~G~gI~i~-~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~ 233 (437)
+|++| +++|+|+++.+|.|.|||||+|+|++++|. |.|+.|. +++|||||||+|+++. ++..++..+...
T Consensus 1 ~~~ii--~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPLII--KVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-EEE--EEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcEEE--EEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 35554 667999999999999999999999999999 8899987 8999999999999851 122222223344
Q ss_pred CCCCCceEeeCCceEEEeeeeeecC--------CCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEE
Q 013757 234 SSDGDGISMFGASHIWIDHVSMSGC--------QDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVA 305 (437)
Q Consensus 234 ~sd~DaIsI~gs~nVWIDHcS~s~~--------~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~ 305 (437)
..++|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|+||+|++|+...|..+++|||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 6789999999999999999999999 99999999999999999999999999999999988766767999999
Q ss_pred eeEEcCCCCCCCcccccceEEEEcceEeCccceEEecCCCceEEEEccEE
Q 013757 306 FNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRF 355 (437)
Q Consensus 306 hN~F~~~~~~R~Pr~R~G~~HvvNN~y~nw~~yaigg~~~~~I~~egN~F 355 (437)
||||. ++.+||||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus 152 hN~f~-~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYFA-NTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EEE-EEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEEC-chhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 99996 89999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=3.5e-48 Score=363.60 Aligned_cols=171 Identities=54% Similarity=0.841 Sum_probs=159.6
Q ss_pred ceeEeccCceEEecCCcceEecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEE
Q 013757 171 EELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWI 250 (437)
Q Consensus 171 ~~L~v~SnkTI~G~ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWI 250 (437)
.+|.|+|||||+|+|++++|. |.+|+|+.++|||||||+|+++.+. ..+++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~---------------~~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV---------------YGSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC---------------CCCCCCEEEEeCCCeEEE
Confidence 579999999999999999999 9999999899999999999975432 125789999999999999
Q ss_pred eeeeeecC---------CCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCcccc
Q 013757 251 DHVSMSGC---------QDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVR 321 (437)
Q Consensus 251 DHcS~s~~---------~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R 321 (437)
|||+|+|+ .|+++|++.++++||||||+|.+|.|++|+|++|++..+..++||+|||||. ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999887666899999999997 7999999999
Q ss_pred cceEEEEcceEeCccceEEecCCCceEEEEccEEecC
Q 013757 322 FGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLAS 358 (437)
Q Consensus 322 ~G~~HvvNN~y~nw~~yaigg~~~~~I~~egN~F~ag 358 (437)
+|++|++||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=99.76 E-value=6.4e-19 Score=135.21 Aligned_cols=53 Identities=58% Similarity=0.936 Sum_probs=51.1
Q ss_pred CccchHHHHHHHHHHHHHHHhhcCCCChHhHHHhhhHhhhhhhc---cCccccccc
Q 013757 25 NTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFE---NGSSTRRYL 77 (437)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~ 77 (437)
||+|||||||+|++||++.++++|+|||++|+++||++|+++++ +.|++||+|
T Consensus 1 nI~efDeyW~~Ra~eA~~~a~~aY~pdP~~Vt~~FN~~V~~~~~~~~~~nstRR~L 56 (56)
T PF04431_consen 1 NIGEFDEYWQKRAEEARKAALAAYVPDPENVTNEFNRHVHRAMEDVEGTNSTRRNL 56 (56)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccCccccCC
Confidence 79999999999999999999999999999999999999999987 789999987
No 5
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.79 E-value=1.2e-06 Score=88.86 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=130.5
Q ss_pred HHHHhhcCCCe-EEEEeeeeEEeeCceeEec-cCceEEecCCc-ceEec------CceEEEEeeeeEEEEccEEeeeecC
Q 013757 147 LRHAVIQERPL-WITFAHDMVIRLSEELLIT-SDKTIDARGSN-VQIYN------GAQITMQFVKNIIIHGLHIRKTKAG 217 (437)
Q Consensus 147 LR~av~~~~P~-~IvF~~~g~I~L~~~L~v~-SnkTI~G~ga~-i~I~~------G~gI~i~~asNVIIrnL~I~~~~~g 217 (437)
|++|+.+-+|- +|++. .|+-++.+.|.|. +++||.|.|.. ..|.. +.+|.+ .++||.|++|+|++.. +
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~-~ 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTK-G 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCC-C
Confidence 45666665554 34433 4777777778886 78888888764 33321 345655 4788888888887542 1
Q ss_pred CCCc-eecCCCC------CC----CccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeee
Q 013757 218 KGGM-IRDSVSH------HG----FRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVM 286 (437)
Q Consensus 218 ~gg~-i~ds~~~------~g----~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~m 286 (437)
.|. ++.+... .. .......+||.+..++++-|.+|.++...|--|-+ ..|++++|++|.+.+-..++
T Consensus 78 -~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 -DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred -CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 111 1111000 00 00013467888888888888888888877633444 35778888888887544444
Q ss_pred ecCCCCCCCCCCcceEEEEeeEEcCCCCCC-----Cc---ccccceEEEEcceEeCcc----------------ceEEec
Q 013757 287 LLGASDGHPQDSIMQVTVAFNHFGKQLVQR-----MP---RVRFGFAHVVNNDYTHWL----------------MYAIGG 342 (437)
Q Consensus 287 LiG~sds~~~d~~~~vTi~hN~F~~~~~~R-----~P---r~R~G~~HvvNN~y~nw~----------------~yaigg 342 (437)
.+-.+. .+.+.+|.+. ++..- .| .+--..+.|.||.+.+-. ..+|-.
T Consensus 156 ~i~~S~--------~~~v~~N~~~-~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i 226 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIAT-NNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVV 226 (314)
T ss_pred EEEecC--------CcEEECCEEe-ccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEE
Confidence 333332 4566677764 22110 11 121135677777776321 112222
Q ss_pred CCCceEEEEccEEecCCCCCccceeeecC------CCCcccccceEecCCceEeecceEeecCCcc
Q 013757 343 SQHPTILSQGNRFLASNSHHSKEVTKRDS------SPQSVWKTWNWRSEMDLMMNGAFFVESGSDV 402 (437)
Q Consensus 343 ~~~~~I~~egN~F~ag~~~~~k~vt~r~~------~~~~~~~~~~w~s~gd~~~nGa~f~~sG~~~ 402 (437)
.....+.+++|.|..-..... -++.... +.+. .|.=. ..++.+-++.|...|..+
T Consensus 227 ~~~~~v~I~~N~i~~n~~~~i-~~~~~~~~~~~~~~~~~---~~~~~-~~~v~i~~N~~~~~g~~p 287 (314)
T TIGR03805 227 MANRDVEIFGNVISNNDTANV-LISSYHSTGLPDQPPDD---GFDPY-PRNISIHDNTFSDGGTNP 287 (314)
T ss_pred EcccceEEECCEEeCCcceeE-EEEecccccCCCCCcCC---CccCC-CcceEEEccEeecCCCCC
Confidence 333677899999987655422 1221111 1111 22212 367888888888887654
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.25 E-value=2.9e-05 Score=82.08 Aligned_cols=136 Identities=17% Similarity=0.256 Sum_probs=93.2
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEE
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITV 274 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITI 274 (437)
.|.+..++||.|+||+|... . .....|||.+.+++||.|.+|.++.+ |..|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~--~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAP--A---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeCC--C---------------CCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 45556789999999999742 1 12357999999999999999999988 556999999999999
Q ss_pred ecceeccCCeeeecCCCCCC-CCCCcceEEEEeeEEcCCCCCCCcccc---cceEEEEcceEeCccceEEecCCCceEEE
Q 013757 275 SNSHFTHQDHVMLLGASDGH-PQDSIMQVTVAFNHFGKQLVQRMPRVR---FGFAHVVNNDYTHWLMYAIGGSQHPTILS 350 (437)
Q Consensus 275 Snn~f~~H~k~mLiG~sds~-~~d~~~~vTi~hN~F~~~~~~R~Pr~R---~G~~HvvNN~y~nw~~yaigg~~~~~I~~ 350 (437)
+||.+.. ..++-||+--.+ ..+...+|++.++.|. + ..+.=|++ .|.-.+-|=.|.|..|..+ ..| |.+
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V---~~p-I~I 351 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLS-G-TDNGVRIKTYQGGSGTASNIIFQNIQMENV---KNP-III 351 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEe-c-CCcceEEeecCCCCeEEEEEEEEeEEEEcc---ccc-EEE
Confidence 9999953 344668864433 2344668999999984 3 34566654 1333444445555554433 223 455
Q ss_pred EccEE
Q 013757 351 QGNRF 355 (437)
Q Consensus 351 egN~F 355 (437)
.-+|.
T Consensus 352 dq~Y~ 356 (431)
T PLN02218 352 DQDYC 356 (431)
T ss_pred Eeecc
Confidence 55554
No 7
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.13 E-value=5.3e-05 Score=79.65 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=80.6
Q ss_pred hHHHHhhcCCC--eEEEEeeeeEEeeCceeEec------cCceEEecCC-cceEecCceEEEEeeeeEEEEccEEeeeec
Q 013757 146 TLRHAVIQERP--LWITFAHDMVIRLSEELLIT------SDKTIDARGS-NVQIYNGAQITMQFVKNIIIHGLHIRKTKA 216 (437)
Q Consensus 146 tLR~av~~~~P--~~IvF~~~g~I~L~~~L~v~------SnkTI~G~ga-~i~I~~G~gI~i~~asNVIIrnL~I~~~~~ 216 (437)
+|..||.+-.| .+++ .+|+-+ ..+|.+. ..+||..+.+ .+.|.+...|.|. ++.++|.+|.|++..+
T Consensus 6 ~lq~Ai~~a~pGD~I~L--~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVL--ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHH--TT-EEEE---SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHhCCCCCEEEE--CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence 48999976444 4333 347766 3456653 2489998855 6788856678885 7999999999998643
Q ss_pred CCCCcee---------cCC--------CCCCCccCCCCCceEe----eCCceEEEeeeeeecC-CCC-eeeee-------
Q 013757 217 GKGGMIR---------DSV--------SHHGFRSSSDGDGISM----FGASHIWIDHVSMSGC-QDG-LIDAV------- 266 (437)
Q Consensus 217 g~gg~i~---------ds~--------~~~g~~~~sd~DaIsI----~gs~nVWIDHcS~s~~-~Dg-liDi~------- 266 (437)
-.+..+. .+. +.|... ..+.+...| .-++|-=||||+|..- ..| +|-+.
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~-~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~ 160 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNP-DREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQ 160 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS--S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCc-ccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcc
Confidence 2211111 000 011100 111222333 2356777899999973 222 23322
Q ss_pred eCCeeEEEecceecc-------CCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCcc--cccceEEEEcceEeC
Q 013757 267 MGSTAITVSNSHFTH-------QDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPR--VRFGFAHVVNNDYTH 334 (437)
Q Consensus 267 ~gS~~ITISnn~f~~-------H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr--~R~G~~HvvNN~y~n 334 (437)
.-..+-+|.+|+|.+ ...++-||.|..... .-+.++.+|+|. +|.+-.=- ++-+.--+.||.|++
T Consensus 161 ~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~--~s~t~Ve~NlFe-~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 161 SIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMS--DSNTTVENNLFE-RCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEE-EE-SSSEEEEEESBT-EEES-EEES
T ss_pred ccccCceEEeccccccCCCCCCCceeEEEeccccccc--ccceeeecchhh-hcCCceeEEEeecCCceEeccEEEe
Confidence 123577999999983 456788887654322 247899999995 67654222 223444445555543
No 8
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.08 E-value=0.0001 Score=77.41 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=81.1
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeE
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAI 272 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~I 272 (437)
-..|.+..++||.|++|+|.... .....|||.+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~~~-----------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISAPS-----------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeCCC-----------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 34566668999999999998421 1235799999999999999999998877 69999999999
Q ss_pred EEecceeccCCeeeecCCCCCC-CCCCcceEEEEeeEEcCCCCCCCcccc
Q 013757 273 TVSNSHFTHQDHVMLLGASDGH-PQDSIMQVTVAFNHFGKQLVQRMPRVR 321 (437)
Q Consensus 273 TISnn~f~~H~k~mLiG~sds~-~~d~~~~vTi~hN~F~~~~~~R~Pr~R 321 (437)
+|+|+.+.. ...+-||+-..+ .......|++.++.|. + .++.=|++
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriK 286 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIK 286 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEE
Confidence 999999854 345667873322 2244678999999995 3 34555553
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.07 E-value=9.7e-05 Score=78.61 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=71.0
Q ss_pred CCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCC-CCCcceEEEEeeEEcCCC
Q 013757 235 SDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHP-QDSIMQVTVAFNHFGKQL 313 (437)
Q Consensus 235 sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~-~d~~~~vTi~hN~F~~~~ 313 (437)
...|||.+.+++||+|.+|.++.+.|. |.++.++++|+|+|+.+.. ..++-||+--++. .+...+|++.++.|. +
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~- 261 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-G- 261 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-C-
Confidence 468999999999999999999987655 9999999999999999864 3356688654332 345678999999995 4
Q ss_pred CCCCccccc---ceEEEEcceEeCccc
Q 013757 314 VQRMPRVRF---GFAHVVNNDYTHWLM 337 (437)
Q Consensus 314 ~~R~Pr~R~---G~~HvvNN~y~nw~~ 337 (437)
..+.=|++- |...+-|=.|.|..|
T Consensus 262 T~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 262 TMNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred CCcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 345556641 323344444445443
No 10
>PLN02155 polygalacturonase
Probab=98.06 E-value=0.00011 Score=77.10 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=88.6
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeE
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAI 272 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~I 272 (437)
-..|.+..++||.|+||+|... . .....|||.+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~p--~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVAP--G---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEECC--C---------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 3345566789999999999842 1 1245799999999999999999998877 58999999999
Q ss_pred EEecceeccCCeeeecCCCCCC-CCCCcceEEEEeeEEcCCCCCCCccccc----ceEEEEcceEeCccc
Q 013757 273 TVSNSHFTHQDHVMLLGASDGH-PQDSIMQVTVAFNHFGKQLVQRMPRVRF----GFAHVVNNDYTHWLM 337 (437)
Q Consensus 273 TISnn~f~~H~k~mLiG~sds~-~~d~~~~vTi~hN~F~~~~~~R~Pr~R~----G~~HvvNN~y~nw~~ 337 (437)
+|+++.+.. ..++-||+.-.+ +.+...+|++.++.|. + ..+.=|++- +...|-|=.|.|..|
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-G-SQNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-C-CCcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 999999874 335678875333 2345678999999995 3 345555531 123444545555544
No 11
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.97 E-value=0.00012 Score=63.76 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=84.4
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEE
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITV 274 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITI 274 (437)
||.|....++.|++.+|++. .++||.+.++..+.|+.|+|.+...| |.+. +..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYG-IYVS-GGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTS-EEEE-CCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcE-EEEe-cCCCeEE
Confidence 57788889999999999953 36899999999999999999995555 5654 4589999
Q ss_pred ecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCcccc--cceEEEEcceEeCccceEEecCC--CceEEE
Q 013757 275 SNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVR--FGFAHVVNNDYTHWLMYAIGGSQ--HPTILS 350 (437)
Q Consensus 275 Snn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R--~G~~HvvNN~y~nw~~yaigg~~--~~~I~~ 350 (437)
++|.|.+......+-.+ -.+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++.... .+++.+
T Consensus 59 ~~~~~~~~~~~i~~~~~--------~~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGS--------SNITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS---------CS-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEec--------CCceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 99999987744333322 25788899885 4433233232 23578899999876655543333 458889
Q ss_pred EccEEecCC
Q 013757 351 QGNRFLASN 359 (437)
Q Consensus 351 egN~F~ag~ 359 (437)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999997654
No 12
>PLN02793 Probable polygalacturonase
Probab=97.97 E-value=0.00015 Score=77.03 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=78.9
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEE
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITV 274 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITI 274 (437)
.|.+..++||.|++|+|.... .....|||.+..++||+|.+|.+..+ |..|.++.++++|+|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I 263 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIKI 263 (443)
T ss_pred EEEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEEE
Confidence 455667899999999998431 12457999999999999999999866 555999889999999
Q ss_pred ecceeccCCeeeecCCCCCC-CCCCcceEEEEeeEEcCCCCCCCcccc
Q 013757 275 SNSHFTHQDHVMLLGASDGH-PQDSIMQVTVAFNHFGKQLVQRMPRVR 321 (437)
Q Consensus 275 Snn~f~~H~k~mLiG~sds~-~~d~~~~vTi~hN~F~~~~~~R~Pr~R 321 (437)
+|+.+... .++-||+--.+ .......|++.++.|. + ..+.=|++
T Consensus 264 ~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 264 RNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 99998642 34567864322 2334678999999985 3 34555554
No 13
>PLN03010 polygalacturonase
Probab=97.92 E-value=0.00048 Score=72.52 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCC-CCCCcceEEEEeeEEcCCC
Q 013757 235 SDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGH-PQDSIMQVTVAFNHFGKQL 313 (437)
Q Consensus 235 sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~-~~d~~~~vTi~hN~F~~~~ 313 (437)
...|||.+..++||+|.+|.+..+ |..|.++.++++++|.++.... ..++-||+--+. ..+....|++.++.|. +
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~- 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q- 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-
Confidence 468999999999999999999888 5569999888888888777652 234557764332 2234668999999995 3
Q ss_pred CCCCccccc---ceEEEEcceEeCccceEEecCCCceEEEEccEEe
Q 013757 314 VQRMPRVRF---GFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFL 356 (437)
Q Consensus 314 ~~R~Pr~R~---G~~HvvNN~y~nw~~yaigg~~~~~I~~egN~F~ 356 (437)
.++.=|++. |.-.|-|=.|.|..+..+ ..| |.+.-+|..
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q~Y~~ 322 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQQYID 322 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEeeccC
Confidence 345555541 233455555555544332 233 555555553
No 14
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.86 E-value=0.00016 Score=73.50 Aligned_cols=150 Identities=22% Similarity=0.249 Sum_probs=96.3
Q ss_pred CCCeEEEEeeeeEEeeCceeEeccCceEEecCCcceEecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCcc
Q 013757 154 ERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRS 233 (437)
Q Consensus 154 ~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~ 233 (437)
..|+.|.|...-.+.++ ++||.-. +...+.+..++||.|++|+|+....
T Consensus 90 ~rp~~i~~~~~~~~~i~-------~i~~~ns-------p~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIE-------GITIRNS-------PFWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEEEEE-------SEEEES--------SSESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecceEEE-------eeEecCC-------CeeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 56888888754333332 2333221 2446677789999999999996421
Q ss_pred CCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCC-CCCcceEEEEeeEEcCC
Q 013757 234 SSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHP-QDSIMQVTVAFNHFGKQ 312 (437)
Q Consensus 234 ~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~-~d~~~~vTi~hN~F~~~ 312 (437)
....|||.+.+++||.|++|.+..+ |..|.++.++.+|+|+||.|.. ..++-+|+.-... .....+|++.++.|. +
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~-~ 215 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII-N 215 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-S
T ss_pred CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-c
Confidence 2357999999999999999999887 5559998888899999999974 3335667532221 122458999999985 3
Q ss_pred CCCCCccccc---ceEEEEcceEeCccce
Q 013757 313 LVQRMPRVRF---GFAHVVNNDYTHWLMY 338 (437)
Q Consensus 313 ~~~R~Pr~R~---G~~HvvNN~y~nw~~y 338 (437)
..|.-|++- +...|-|=.|.+..+.
T Consensus 216 -t~~gi~iKt~~~~~G~v~nI~f~ni~~~ 243 (326)
T PF00295_consen 216 -TDNGIRIKTWPGGGGYVSNITFENITME 243 (326)
T ss_dssp -ESEEEEEEEETTTSEEEEEEEEEEEEEE
T ss_pred -cceEEEEEEecccceEEeceEEEEEEec
Confidence 346655541 2233344444454443
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.80 E-value=0.0015 Score=69.30 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=92.9
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeec-----CCCCeeeeeeCC
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSG-----CQDGLIDAVMGS 269 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~-----~~DgliDi~~gS 269 (437)
-|++.+++|+.|++|+|++. ..=.|.+..++||.|++.++.. -.|| ||+. .+
T Consensus 194 ~i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi~-ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHIT-NT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eeec-cc
Confidence 47788999999999999953 2345889999999999999876 4688 8984 58
Q ss_pred eeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCC------CCCccc-ccceEEEEcceEeCccceEE--
Q 013757 270 TAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLV------QRMPRV-RFGFAHVVNNDYTHWLMYAI-- 340 (437)
Q Consensus 270 ~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~------~R~Pr~-R~G~~HvvNN~y~nw~~yai-- 340 (437)
++|+|++|.|...+...-|.+.. .+|++.++.++.+.. .+.+.- -.-.++|-|+.+.+.. +++
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRI 322 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRI 322 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEE
Confidence 99999999999988887776542 368888887753221 111100 0114666676666532 232
Q ss_pred -----ecCCCceEEEEccEEecCCCC
Q 013757 341 -----GGSQHPTILSQGNRFLASNSH 361 (437)
Q Consensus 341 -----gg~~~~~I~~egN~F~ag~~~ 361 (437)
+++.-..|.+++...+....+
T Consensus 323 KT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 323 KTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred eecCCCCeEEEEEEEEeEEEEccccc
Confidence 222335677777777766554
No 16
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.68 E-value=0.0021 Score=68.57 Aligned_cols=141 Identities=17% Similarity=0.260 Sum_probs=97.1
Q ss_pred eEEEEeeeeEEeeCceeEeccCceEEecCCcce----EecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCc
Q 013757 157 LWITFAHDMVIRLSEELLITSDKTIDARGSNVQ----IYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFR 232 (437)
Q Consensus 157 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~----I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~ 232 (437)
.||.|..- +.|.|...=||+|+|..-. -. -..|.+.+++|+.|++|++++.
T Consensus 105 ~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~r-P~~l~f~~~~nv~I~gitl~NS------------------ 159 (456)
T PLN03003 105 QWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSR-PTALKFRSCNNLRLSGLTHLDS------------------ 159 (456)
T ss_pred ceEEEEcc------cceEEeccceEeCCchhhhhcccCC-ceEEEEEecCCcEEeCeEEecC------------------
Confidence 58888631 3366655569999986211 11 2257888999999999999954
Q ss_pred cCCCCCceEeeCCceEEEeeeeeec-----CCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEee
Q 013757 233 SSSDGDGISMFGASHIWIDHVSMSG-----CQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFN 307 (437)
Q Consensus 233 ~~sd~DaIsI~gs~nVWIDHcS~s~-----~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN 307 (437)
..=.|.+.+++||.|++..+.. -.|| ||+ ..|++|+|.+|.+...+.+.-+++.- .+|++.++
T Consensus 160 ---p~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~ 227 (456)
T PLN03003 160 ---PMAHIHISECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGI 227 (456)
T ss_pred ---CcEEEEEeccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEee
Confidence 2345888899999999999986 3688 898 46899999999999998888777542 25677777
Q ss_pred EEcCCC------CCCCcc-cccceEEEEcceEeC
Q 013757 308 HFGKQL------VQRMPR-VRFGFAHVVNNDYTH 334 (437)
Q Consensus 308 ~F~~~~------~~R~Pr-~R~G~~HvvNN~y~n 334 (437)
.++.+. ..+... -..-.++|-|+.+++
T Consensus 228 ~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 228 DCGPGHGISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred EEECCCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 664221 111110 011247788888776
No 17
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.63 E-value=0.0013 Score=57.24 Aligned_cols=131 Identities=21% Similarity=0.163 Sum_probs=72.9
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeE
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAI 272 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~I 272 (437)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.++.+. ..+.+. .+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCc
Confidence 456667666777777777773 256788887888888888888877 445554 67788
Q ss_pred EEecceeccCCe-eeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCccccc-c--eEEEEcceEeCccceEEecCCCce-
Q 013757 273 TVSNSHFTHQDH-VMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRF-G--FAHVVNNDYTHWLMYAIGGSQHPT- 347 (437)
Q Consensus 273 TISnn~f~~H~k-~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R~-G--~~HvvNN~y~nw~~yaigg~~~~~- 347 (437)
+|++|.|.+... .+.+.. ....+++.+|.|. +..+..=.+.. . .+-+.||.+++-..+++....+..
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 888888887544 333332 1235788888885 33322222221 2 456688888877778885554444
Q ss_pred EEEEccEE
Q 013757 348 ILSQGNRF 355 (437)
Q Consensus 348 I~~egN~F 355 (437)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 77888876
No 18
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.57 E-value=0.0062 Score=58.34 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=34.5
Q ss_pred CceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEc
Q 013757 238 DGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFG 310 (437)
Q Consensus 238 DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~ 310 (437)
.||.+..+.+..|..+.|+....| |-+ .++...||++|.|.+...++.+-.+. +.++.+|.|.
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~G-I~l-~~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~ 142 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYG-IYL-YGSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTIS 142 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCce-EEE-eeCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEe
Confidence 556666666556666666666664 333 23555666666666544444443321 3455666664
No 19
>PLN02155 polygalacturonase
Probab=97.56 E-value=0.0028 Score=66.57 Aligned_cols=141 Identities=18% Similarity=0.269 Sum_probs=95.8
Q ss_pred eEEEEeeeeEEeeCceeEeccCceEEecCCcceEe--------c-CceEEEEeeeeEEEEccEEeeeecCCCCceecCCC
Q 013757 157 LWITFAHDMVIRLSEELLITSDKTIDARGSNVQIY--------N-GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVS 227 (437)
Q Consensus 157 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~I~--------~-G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~ 227 (437)
.||.|.. .+.+.|.. =||+|||..---. + -..|.+..++||.|++|++++.
T Consensus 107 ~wi~~~~------~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNK------VNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEEC------cCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 4776653 23455554 6889998631110 0 1247888999999999999953
Q ss_pred CCCCccCCCCCceEeeCCceEEEeeeeeecC-----CCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceE
Q 013757 228 HHGFRSSSDGDGISMFGASHIWIDHVSMSGC-----QDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQV 302 (437)
Q Consensus 228 ~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~-----~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~v 302 (437)
..=.|.+.+++||.|+|.++..- .|| ||+ ..+++|+|++|.|...+....++..- .+|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 23458888999999999999653 577 887 45899999999999988888887642 267
Q ss_pred EEEeeEEcCCC------CCCCc-ccccceEEEEcceEeC
Q 013757 303 TVAFNHFGKQL------VQRMP-RVRFGFAHVVNNDYTH 334 (437)
Q Consensus 303 Ti~hN~F~~~~------~~R~P-r~R~G~~HvvNN~y~n 334 (437)
++..+.+..+. ..+.+ .-.+-.+.|-|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 77777664211 11222 1112256777888775
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.53 E-value=0.0044 Score=63.02 Aligned_cols=101 Identities=19% Similarity=0.075 Sum_probs=69.7
Q ss_pred CCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCC
Q 013757 236 DGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQ 315 (437)
Q Consensus 236 d~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~ 315 (437)
..+||.+..++++.|-+|.+.....| |-+. .|.+++|.+|.+.+-.-+.++-..+.-..-...++++++|.|. +...
T Consensus 129 ~d~GIyv~~s~~~~v~nN~~~~n~~G-I~i~-~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~ 205 (314)
T TIGR03805 129 SDAGIYVGQSQNIVVRNNVAEENVAG-IEIE-NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNT 205 (314)
T ss_pred CcccEEECCCCCeEEECCEEccCcce-EEEE-ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCC
Confidence 34689999999999999999988887 4443 4889999999999766666553222111112348999999996 4433
Q ss_pred CC-----------cccccc-------eEEEEcceEeCccceEE
Q 013757 316 RM-----------PRVRFG-------FAHVVNNDYTHWLMYAI 340 (437)
Q Consensus 316 R~-----------Pr~R~G-------~~HvvNN~y~nw~~yai 340 (437)
.+ |.-+ | .+.++||.+.+-...++
T Consensus 206 ~n~~~~gn~v~~~~~g~-Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 206 PNFAPAGSIVASVPAGT-GVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CCCcccCCceecCCCCc-EEEEEcccceEEECCEEeCCcceeE
Confidence 21 1111 2 36999999998665554
No 21
>PLN03010 polygalacturonase
Probab=97.53 E-value=0.0039 Score=65.81 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=91.1
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeec-----CCCCeeeeeeCC
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSG-----CQDGLIDAVMGS 269 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~-----~~DgliDi~~gS 269 (437)
.|.+.+++||.|++|++++. ..=.|.+.++++|.|++..+.. -.|| ||+. .+
T Consensus 159 ~l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDG-iDi~-~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDG-IDIS-YS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCc-eeee-cc
Confidence 47788999999999999964 1234888899999999999875 4688 8984 58
Q ss_pred eeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCC----CCCCCcc-cccceEEEEcceEeCccceEE----
Q 013757 270 TAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQ----LVQRMPR-VRFGFAHVVNNDYTHWLMYAI---- 340 (437)
Q Consensus 270 ~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~----~~~R~Pr-~R~G~~HvvNN~y~nw~~yai---- 340 (437)
++|+|++|.+...+...-+.+..+ ...|+...+..+++ ....... --.-.++|-|+.+++-. +++
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt 289 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKT 289 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEE
Confidence 999999999999998888875421 23555555543311 0111110 00124778888777632 222
Q ss_pred --e-cCCCceEEEEccEEecCCCC
Q 013757 341 --G-GSQHPTILSQGNRFLASNSH 361 (437)
Q Consensus 341 --g-g~~~~~I~~egN~F~ag~~~ 361 (437)
| ++.-..|.+++-.++....+
T Consensus 290 ~~G~~G~v~nItf~nI~m~~v~~p 313 (409)
T PLN03010 290 WQGGQGYARNISFENITLINTKNP 313 (409)
T ss_pred ecCCCEEEEEeEEEeEEEecCCcc
Confidence 1 11234667788777776654
No 22
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.49 E-value=0.0015 Score=66.43 Aligned_cols=108 Identities=23% Similarity=0.323 Sum_probs=76.5
Q ss_pred eEeccCceEEecCCcce----------EecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEe
Q 013757 173 LLITSDKTIDARGSNVQ----------IYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISM 242 (437)
Q Consensus 173 L~v~SnkTI~G~ga~i~----------I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI 242 (437)
+.+...=||+|+|..-. ...-..|.+.+++|+.|++|+|++.. .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEEE
Confidence 34444458999986100 00023588889999999999999541 225888
Q ss_pred eCCceEEEeeeeeecC-----CCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEc
Q 013757 243 FGASHIWIDHVSMSGC-----QDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFG 310 (437)
Q Consensus 243 ~gs~nVWIDHcS~s~~-----~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~ 310 (437)
..++||.|+|.++... .|| ||+. ++++|+|.+|.|...+...-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDG-id~~-~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDG-IDID-SSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--S-EEEE-SEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcce-EEEE-eeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 9999999999999753 588 8884 68999999999999888877765432 7888888885
No 23
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.47 E-value=0.0064 Score=64.61 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=72.5
Q ss_pred hHHHHhhcCC-C-eEEEEeeeeEEeeCceeEeccCceEEecCCcc--eEecCceEE-EEeeeeEEEEccEEeeeecCCCC
Q 013757 146 TLRHAVIQER-P-LWITFAHDMVIRLSEELLITSDKTIDARGSNV--QIYNGAQIT-MQFVKNIIIHGLHIRKTKAGKGG 220 (437)
Q Consensus 146 tLR~av~~~~-P-~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i--~I~~G~gI~-i~~asNVIIrnL~I~~~~~g~gg 220 (437)
.|+.|+.+-. | -.|++.. |+- +...|.+.+++||.|+..-+ .|.++.++. -..++||-|++++|++- |
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs-----G 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG-----G 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC-----C
Confidence 4788876522 1 2344443 332 23678899999999995321 365443433 24689999999999852 2
Q ss_pred ceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCC-CCeeeeeeCCeeEEEecceec
Q 013757 221 MIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQ-DGLIDAVMGSTAITVSNSHFT 280 (437)
Q Consensus 221 ~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~-DgliDi~~gS~~ITISnn~f~ 280 (437)
. + .....-+|.+.+++++-|.+|.|.... -| |.+.. +. ..|++|.+.
T Consensus 129 ~--d--------l~~rdAgI~v~~a~~v~Iedn~L~gsg~FG-I~L~~-~~-~~I~~N~I~ 176 (455)
T TIGR03808 129 I--P--------LPQRRGLIHCQGGRDVRITDCEITGSGGNG-IWLET-VS-GDISGNTIT 176 (455)
T ss_pred C--c--------ccCCCCEEEEccCCceEEEeeEEEcCCcce-EEEEc-Cc-ceEecceEe
Confidence 1 1 123345788989999999999999884 66 45433 34 444444444
No 24
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.25 E-value=0.023 Score=52.76 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=64.3
Q ss_pred hHHHHh--h-cCCCeEEEEeeeeEEeeCceeEeccCceEEecCCcceE-e---cCceE-------EEEee-ee--EEEEc
Q 013757 146 TLRHAV--I-QERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQI-Y---NGAQI-------TMQFV-KN--IIIHG 208 (437)
Q Consensus 146 tLR~av--~-~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~I-~---~G~gI-------~i~~a-sN--VIIrn 208 (437)
.|+.|+ . ..+..+|.|- .|+-.++..|.+.+++||.|.|....+ . ....+ .+... .+ +-|+|
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 378888 2 3455666665 489999999999999999999874333 2 11111 11111 12 44889
Q ss_pred cEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeee
Q 013757 209 LHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAV 266 (437)
Q Consensus 209 L~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~ 266 (437)
|.|....... ....++|.+..+++++|++|++..+...-+.+.
T Consensus 99 l~i~~~~~~~---------------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 99 LTIDGNGIDP---------------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEETCGCE----------------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred eEEEcccccC---------------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 9988532110 112578888899999999999999755545554
No 25
>PLN02793 Probable polygalacturonase
Probab=97.11 E-value=0.01 Score=63.30 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=79.6
Q ss_pred eeEeccCceEEecCCcce-----Eec-------CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCc
Q 013757 172 ELLITSDKTIDARGSNVQ-----IYN-------GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDG 239 (437)
Q Consensus 172 ~L~v~SnkTI~G~ga~i~-----I~~-------G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~Da 239 (437)
.+.|...=||+|+|..-. +.. -..|.+.+++||.|++|++++. ..=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------------------p~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------------------QQMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---------------------CCeE
Confidence 345544558888885211 110 1247888999999999999953 1234
Q ss_pred eEeeCCceEEEeeeeeec-----CCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEc
Q 013757 240 ISMFGASHIWIDHVSMSG-----CQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFG 310 (437)
Q Consensus 240 IsI~gs~nVWIDHcS~s~-----~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~ 310 (437)
|.+.+++||.|++.++.. -.|| ||+ ..+++|+|++|.|...+....+.... .+|+|.++.++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 788899999999999975 4688 888 46899999999999998888776432 26788777764
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.09 E-value=0.009 Score=57.22 Aligned_cols=132 Identities=20% Similarity=0.117 Sum_probs=95.8
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeE
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAI 272 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~I 272 (437)
..++.+..+.++.|++.+|++. ..||.+.+++++-|..|.++.+.+| |.+.. +.+.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~G-i~l~~-s~~~ 90 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYG-IYLMG-SSNN 90 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCC-EEEEc-CCCc
Confidence 4466777889999999988842 5789999999999999999999988 55544 4455
Q ss_pred EEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCccccc-ceEEEEcceEeCccceEEe-cCCCceEEE
Q 013757 273 TVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRF-GFAHVVNNDYTHWLMYAIG-GSQHPTILS 350 (437)
Q Consensus 273 TISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R~-G~~HvvNN~y~nw~~yaig-g~~~~~I~~ 350 (437)
+|++|.|.+...++++-.+. ..++..|.|. .....-.+.. ....|.+|.+.+-..|+|. ........+
T Consensus 91 ~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~--~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I 160 (236)
T PF05048_consen 91 TISNNTISNNGYGIYLYGSS--------NNTISNNTIS--NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTI 160 (236)
T ss_pred EEECCEecCCCceEEEeeCC--------ceEEECcEEe--CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEE
Confidence 99999999876666555443 3688888884 2333333332 4678899999987667776 444445678
Q ss_pred EccEEecC
Q 013757 351 QGNRFLAS 358 (437)
Q Consensus 351 egN~F~ag 358 (437)
.+|+|...
T Consensus 161 ~~N~f~N~ 168 (236)
T PF05048_consen 161 YNNNFNNS 168 (236)
T ss_pred ECCCccCE
Confidence 89999333
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.06 E-value=0.013 Score=62.37 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=89.8
Q ss_pred CceEEecCCcceEecCceEEEEeeeeEEEEccEEeeeecCCC-------CceecCCCCCCCccCCCCCceEeeCCceEEE
Q 013757 178 DKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKG-------GMIRDSVSHHGFRSSSDGDGISMFGASHIWI 250 (437)
Q Consensus 178 nkTI~G~ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~g-------g~i~ds~~~~g~~~~sd~DaIsI~gs~nVWI 250 (437)
++||+|.|....=. -++|.++.++++.|++.+|++.- +.| +.|.+.. . ......+|.++.++++.|
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg-~FGI~L~~~~~~I~~N~--I---~g~~~~~I~lw~S~g~~V 193 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSG-GNGIWLETVSGDISGNT--I---TQIAVTAIVSFDALGLIV 193 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCC-cceEEEEcCcceEecce--E---eccccceEEEeccCCCEE
Confidence 45777777543322 45788888999999999998651 011 1111100 0 011234488888889999
Q ss_pred eeeeeecCCCCeeeeee-----------------------------------CCeeEEEecceeccCCeeeecCCCCCCC
Q 013757 251 DHVSMSGCQDGLIDAVM-----------------------------------GSTAITVSNSHFTHQDHVMLLGASDGHP 295 (437)
Q Consensus 251 DHcS~s~~~DgliDi~~-----------------------------------gS~~ITISnn~f~~H~k~mLiG~sds~~ 295 (437)
.+++++.+.|+.|-+.+ .+.+++|++|.++++..--+.+.+.+
T Consensus 194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss-- 271 (455)
T TIGR03808 194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS-- 271 (455)
T ss_pred ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc--
Confidence 99999988886544432 24677888888887763333333221
Q ss_pred CCCcceEEEEeeEEcCCCCCCCccccc-ce--------EEEEcceEeCc-cceEEe-cCCCceE-EEEccEEec
Q 013757 296 QDSIMQVTVAFNHFGKQLVQRMPRVRF-GF--------AHVVNNDYTHW-LMYAIG-GSQHPTI-LSQGNRFLA 357 (437)
Q Consensus 296 ~d~~~~vTi~hN~F~~~~~~R~Pr~R~-G~--------~HvvNN~y~nw-~~yaig-g~~~~~I-~~egN~F~a 357 (437)
++.|..|.|. ++|| |. .-+.||.++.- ..|++. -.++.++ .++||...+
T Consensus 272 -----~~~i~~N~~~--------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 -----NIQITGNSVS--------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred -----CcEEECcEee--------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 3455555552 3344 21 23566776643 346652 2333333 467777654
No 28
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.96 E-value=0.064 Score=56.23 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=123.9
Q ss_pred HHHHhhcCCCeEEEEeeeeEEeeCceeEeccCceEEecCCcceEec--CceEEEE---------eeeeEEEEccEEeeee
Q 013757 147 LRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYN--GAQITMQ---------FVKNIIIHGLHIRKTK 215 (437)
Q Consensus 147 LR~av~~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~I~~--G~gI~i~---------~asNVIIrnL~I~~~~ 215 (437)
|-.++.+-. -|..+-+-+-.+.+.+.|++..+|+|+||-|.|.. +.+|.+. +-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 666666543 24445555566778899999999999999888852 3345553 457888888888731
Q ss_pred cCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCC
Q 013757 216 AGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHP 295 (437)
Q Consensus 216 ~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~ 295 (437)
..--++-+...+++.|--|+|....-=.++.. ....|..|+|..-+|++. +.
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~-~~----- 185 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIV-SR----- 185 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEee-cC-----
Confidence 12467888899999999999999887777775 467899999988777752 22
Q ss_pred CCCcceEEEEeeEEcCCCCCCCcccccceEEEEcceEeCccceEEecCCCceEEEEccEEecCCC
Q 013757 296 QDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNS 360 (437)
Q Consensus 296 ~d~~~~vTi~hN~F~~~~~~R~Pr~R~G~~HvvNN~y~nw~~yaigg~~~~~I~~egN~F~ag~~ 360 (437)
++.++++.+|.|. .+.==. +--|..++-+|...+-.-..+-.+ +-.+.+|.|..+..
T Consensus 186 --~~~~lsVk~C~Fe-kC~igi--~s~G~~~i~hn~~~ec~Cf~l~~g---~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 186 --GKSKLSVKKCVFE-KCVIGI--VSEGPARIRHNCASECGCFVLMKG---TGSIKHNMVCGPND 242 (386)
T ss_pred --CcceEEeeheeee-heEEEE--EecCCeEEecceecccceEEEEcc---cEEEeccEEeCCCC
Confidence 2457889999995 222111 223788999999988664444322 33688999997765
No 29
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.94 E-value=0.013 Score=61.78 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=107.0
Q ss_pred eEEEEeeeeEEeeCceeEeccCceEEecCCcce------Ee-c----CceEEEEeeeeEEEEccEEeeeecCCCCceecC
Q 013757 157 LWITFAHDMVIRLSEELLITSDKTIDARGSNVQ------IY-N----GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDS 225 (437)
Q Consensus 157 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~i~------I~-~----G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds 225 (437)
.||.|.. -..|.|...=||+|+|..-- .. + -.-|.+..++||.|++|+|++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777741 13466666678888886210 00 0 1246778899999999999953
Q ss_pred CCCCCCccCCCCCceEeeCCceEEEeeeeeec-----CCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcc
Q 013757 226 VSHHGFRSSSDGDGISMFGASHIWIDHVSMSG-----CQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIM 300 (437)
Q Consensus 226 ~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~-----~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~ 300 (437)
..=.|.+..++||.|++.++.. -.|| ||+ ..+++|+|.+|.|...+...-++... .
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 2345888899999999999886 3677 888 46899999999999998888886432 2
Q ss_pred eEEEEeeEEcCCC------CCCCcc-cccceEEEEcceEeCccceEEe---------cCCCceEEEEccEEecCCCC
Q 013757 301 QVTVAFNHFGKQL------VQRMPR-VRFGFAHVVNNDYTHWLMYAIG---------GSQHPTILSQGNRFLASNSH 361 (437)
Q Consensus 301 ~vTi~hN~F~~~~------~~R~Pr-~R~G~~HvvNN~y~nw~~yaig---------g~~~~~I~~egN~F~ag~~~ 361 (437)
+|++-++.+..+. ..+.+. -....+.|-|+.+++-. +++. ++.-..|.+++-.++....+
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 5777776664211 011110 11234667777777642 2221 11123566777777665543
No 30
>PLN02480 Probable pectinesterase
Probab=96.72 E-value=0.036 Score=57.36 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=82.0
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCc-ceEec---------CceEEEEeeeeEEEEc
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSN-VQIYN---------GAQITMQFVKNIIIHG 208 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~-i~I~~---------G~gI~i~~asNVIIrn 208 (437)
|+.+||.+ +..+++||=..|+- ++.|.|. .|+||.|.+.+ ..|.. ++.|+| .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78899854 23356666666764 4678883 57899998853 34431 335666 489999999
Q ss_pred cEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeee
Q 013757 209 LHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVML 287 (437)
Q Consensus 209 L~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mL 287 (437)
|+|++..+.+. ....+.-|+-+. .+.++-+.+|.|.-..|=|.+- ...--..+|++..+-. .+
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~VD-FI 202 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGSID-FI 202 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEeeee-EE
Confidence 99998642110 011234566664 6899999999999999988763 2345556666664322 34
Q ss_pred cCCC
Q 013757 288 LGAS 291 (437)
Q Consensus 288 iG~s 291 (437)
||..
T Consensus 203 FG~g 206 (343)
T PLN02480 203 FGRG 206 (343)
T ss_pred ccce
Confidence 5543
No 31
>PLN02197 pectinesterase
Probab=96.53 E-value=0.1 Score=57.55 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=85.5
Q ss_pred Ccchhc--cccccccCCccccCCCCCCCCCcE---EEecCCCCCCCCCCCCc---hHHHHhhc----CCCeEEEEeeeeE
Q 013757 99 DRNWAN--NRKRLADCAQGFGRGTIGGKNGPF---YVVTNPADDDLVNPKPG---TLRHAVIQ----ERPLWITFAHDMV 166 (437)
Q Consensus 99 ~~~w~~--~r~~la~~a~GFG~~ttGG~gG~v---y~VT~~~d~~~~n~~pG---tLR~av~~----~~P~~IvF~~~g~ 166 (437)
.|.|-. +|+-|. +.+.|.++-||..+.+ ++|-- | |.| |+.+||.. +..++|||=..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 578854 365553 3455667777776643 23321 2 455 88888854 3346777777777
Q ss_pred EeeCceeEec---cCceEEecCCcceEe---------cC------ceEEEEeeeeEEEEccEEeeeecCCCCceecCCCC
Q 013757 167 IRLSEELLIT---SDKTIDARGSNVQIY---------NG------AQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSH 228 (437)
Q Consensus 167 I~L~~~L~v~---SnkTI~G~ga~i~I~---------~G------~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~ 228 (437)
- .+.+.|. .|+||.|.|.+-+|. +| +.+.+ .+++++.+||+|++.. +.
T Consensus 314 Y--~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Nta-g~---------- 379 (588)
T PLN02197 314 Y--NEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTA-GP---------- 379 (588)
T ss_pred E--EEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCC-CC----------
Confidence 3 4667774 489999998744333 11 12222 4799999999999753 11
Q ss_pred CCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 229 HGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 229 ~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
.+.-|+-+. .+...-+.+|+|.-..|=|.+
T Consensus 380 ------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 380 ------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred ------CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 123455554 578899999999987776654
No 32
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.30 E-value=0.14 Score=50.88 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=103.7
Q ss_pred hHHHHhhcCCCeEEEEeeeeEEeeC----ceeEeccCceEEecCC-----cceEec--------Cce-------EEEEee
Q 013757 146 TLRHAVIQERPLWITFAHDMVIRLS----EELLITSDKTIDARGS-----NVQIYN--------GAQ-------ITMQFV 201 (437)
Q Consensus 146 tLR~av~~~~P~~IvF~~~g~I~L~----~~L~v~SnkTI~G~ga-----~i~I~~--------G~g-------I~i~~a 201 (437)
||.+|+.+-.|-.+|+=..|+-+-. -+|.+.+.+||.|... .+.+.+ |.+ ++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 7888887765544444455665432 2578888888888533 122221 222 455556
Q ss_pred eeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecC-CCCeeeee----eCCeeEEEec
Q 013757 202 KNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGC-QDGLIDAV----MGSTAITVSN 276 (437)
Q Consensus 202 sNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~-~DgliDi~----~gS~~ITISn 276 (437)
++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|..... -...+++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 778888888886421 24678888777 888899999996 56642211 1335677888
Q ss_pred ceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCC------CCCcccccc-eEEEEcceEeCccceEEecCC--Cce
Q 013757 277 SHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLV------QRMPRVRFG-FAHVVNNDYTHWLMYAIGGSQ--HPT 347 (437)
Q Consensus 277 n~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~------~R~Pr~R~G-~~HvvNN~y~nw~~yaigg~~--~~~ 347 (437)
|.+.......-+- +... . -...+-+|++.++.. +- |.+..+ .-.+=||.+.+-+.|-+.-.. .-+
T Consensus 158 N~~~~~~~Gi~i~--~~~~--~-~~n~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~ 231 (246)
T PF07602_consen 158 NSIYFNKTGISIS--DNAA--P-VENKIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQT 231 (246)
T ss_pred ceEEecCcCeEEE--cccC--C-ccceeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEecCcceeeEeccCCcee
Confidence 7766433222111 1100 0 112335566542211 12 444321 223567777777777765532 346
Q ss_pred EEEEccEEe
Q 013757 348 ILSQGNRFL 356 (437)
Q Consensus 348 I~~egN~F~ 356 (437)
+++.||-..
T Consensus 232 l~a~gN~ld 240 (246)
T PF07602_consen 232 LYAVGNQLD 240 (246)
T ss_pred EEEeCCccC
Confidence 777777654
No 33
>smart00656 Amb_all Amb_all domain.
Probab=96.15 E-value=0.33 Score=46.00 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=81.7
Q ss_pred EeccCceEEecCCcceEecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCc-eEee-CCceEEEe
Q 013757 174 LITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDG-ISMF-GASHIWID 251 (437)
Q Consensus 174 ~v~SnkTI~G~ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~Da-IsI~-gs~nVWID 251 (437)
+|-.|++|.+...... .++.+|.+.+++||+|.+.+|....+.. . .....|+ +.+. ++.+|=|-
T Consensus 42 VIirnl~i~~~~~~~~-~~~D~i~~~~~~~VwIDHct~s~~~~~~------------~-~~~~~D~~~di~~~s~~vTvs 107 (190)
T smart00656 42 VIIRNLTIHDPKPVYG-SDGDAISIDGSSNVWIDHVSLSGCTVTG------------F-GDDTYDGLIDIKNGSTYVTIS 107 (190)
T ss_pred EEEeCCEEECCccCCC-CCCCEEEEeCCCeEEEEccEeEcceecc------------C-CCCCCCccEEECcccccEEEE
Confidence 3345888887543211 2367899999999999999999642110 0 0122344 3443 56777777
Q ss_pred eeeeecCCCCeeeeeeCC------eeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCccccc-ce
Q 013757 252 HVSMSGCQDGLIDAVMGS------TAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRF-GF 324 (437)
Q Consensus 252 HcS~s~~~DgliDi~~gS------~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R~-G~ 324 (437)
.|.|....-+.+--..++ ..||+.+|+|.+.. +....- +.-++-+..|+|. +..+-.--++. +.
T Consensus 108 ~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~-----~R~P~~---r~g~~hv~NN~~~-n~~~~~~~~~~~~~ 178 (190)
T smart00656 108 NNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLR-----QRAPRV---RFGYVHVYNNYYT-GWTSYAIGGRMGAT 178 (190)
T ss_pred CceEecCCEEEEEccCCCccccccceEEEECcEEcCcc-----cCCCcc---cCCEEEEEeeEEe-CcccEeEecCCCcE
Confidence 777765433332221111 27999999998632 111111 1126889999995 54433222332 67
Q ss_pred EEEEcceEeC
Q 013757 325 AHVVNNDYTH 334 (437)
Q Consensus 325 ~HvvNN~y~n 334 (437)
+.+-||+|.+
T Consensus 179 v~~E~N~F~~ 188 (190)
T smart00656 179 ILSEGNYFEA 188 (190)
T ss_pred EEEECeEEEC
Confidence 9999999986
No 34
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.089 Score=57.50 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeee--------
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAV-------- 266 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~-------- 266 (437)
++..+.++|+.|+||+|..... ...|||-+..++||-|+-|.|+.+.| .|-++
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~ 323 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDGK 323 (542)
T ss_pred EEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCccc
Confidence 3445678999999999984321 15799999999999999999999544 34443
Q ss_pred ---eCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCccc
Q 013757 267 ---MGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRV 320 (437)
Q Consensus 267 ---~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~ 320 (437)
.-+.+|+|++|+|..-.-+..+|+.- ..+...+++-.|.|. + ..|.=|+
T Consensus 324 ~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~-~-~d~GLRi 375 (542)
T COG5434 324 KGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMD-N-TDRGLRI 375 (542)
T ss_pred ccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeec-c-Ccceeee
Confidence 23468999999999544444455421 124567888889984 3 5566665
No 35
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.76 E-value=0.066 Score=49.67 Aligned_cols=121 Identities=17% Similarity=0.288 Sum_probs=69.2
Q ss_pred CceEEecCCcceEecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCC-ceEeeC-CceEEEeeeee
Q 013757 178 DKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGD-GISMFG-ASHIWIDHVSM 255 (437)
Q Consensus 178 nkTI~G~ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~D-aIsI~g-s~nVWIDHcS~ 255 (437)
|.||+|.+....=. +.++.+..++|+.|+|++++++.. .|..-...+.+.. ...... ++.+.+ +.+++++.|.+
T Consensus 98 nl~i~~~~~~~~~~-~~~i~~~~~~~~~i~nv~~~~~~~--~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 98 NLTIDGNGIDPNNN-NNGIRFNSSQNVSISNVRIENSGG--DGIYFNTGTDYRI-IGSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEETCGCE-SC-EEEEEETTEEEEEEEEEEEES-SS---SEEEECCEECEE-ECCEEEEEEEEESCEEEEEEECEEE
T ss_pred eeEEEcccccCCCC-ceEEEEEeCCeEEEEeEEEEccCc--cEEEEEccccCcE-eecccceeeeeccceeEEEECCccc
Confidence 58888886421100 357888889999999999997521 1111000000000 001112 455554 34455577888
Q ss_pred ecCCCCeeeeeeCCeeEEEecceecc-CCeeeecCCCCCCCCCCcceEEEEeeEEcCCCC
Q 013757 256 SGCQDGLIDAVMGSTAITVSNSHFTH-QDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLV 314 (437)
Q Consensus 256 s~~~DgliDi~~gS~~ITISnn~f~~-H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~ 314 (437)
..+.+| +..+..+++|+||.|.. ....+.+-.. -.+++.+|.|. ++.
T Consensus 174 ~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~-~~~ 221 (225)
T PF12708_consen 174 NGGDNG---IILGNNNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIE-NCD 221 (225)
T ss_dssp ESSSCS---EECEEEEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEE-SSS
T ss_pred cCCCce---eEeecceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEE-CCc
Confidence 888888 33445899999999986 4444433221 14788888884 554
No 36
>PLN02176 putative pectinesterase
Probab=95.51 E-value=0.29 Score=50.73 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=77.0
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEe---c------CceEEEEeeeeEEEEcc
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIY---N------GAQITMQFVKNIIIHGL 209 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~---~------G~gI~i~~asNVIIrnL 209 (437)
|+.+||.. +..+++||-..|+- .+.+.|. .|+||.|.|.+-+|. . -+.+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 78888843 23356666667774 4667783 489999998754433 1 224555 5899999999
Q ss_pred EEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccC
Q 013757 210 HIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQ 282 (437)
Q Consensus 210 ~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H 282 (437)
+|++..+..+ ......+-|+-+. .+..+-+.+|.|.-..|=|.+- +..--..+|++..+
T Consensus 130 T~~Nt~~~~~-----------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIAS-----------NSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccC-----------CCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEec
Confidence 9998642100 0001223455554 4788999999999888887763 23455566666643
No 37
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.29 E-value=0.22 Score=54.62 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=73.3
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEecC-------------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIYNG-------------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~~G-------------~gI~i~~asNVI 205 (437)
|+.+||.. +..++|||=..|+- .+.+.|. .|+||.|.|.+.+|.-+ +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 78888853 44577777777864 4667773 58999999975544322 22444 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
.+||+|++... . ...-|+-+. .+.++-+-+|.|.-..|=|.+- +..--..+|++..
T Consensus 321 a~nitf~Ntag-~----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 377 (541)
T PLN02416 321 ARDITIENTAG-P----------------EKHQAVALRVNADLVALYRCTINGYQDTLYVH---SFRQFYRECDIYG 377 (541)
T ss_pred EEeeEEEECCC-C----------------CCCceEEEEEcCccEEEEcceEecccchhccC---CCceEEEeeEEee
Confidence 99999997631 1 112344443 4688889999998877766542 2334455555553
No 38
>PLN02682 pectinesterase family protein
Probab=94.73 E-value=0.51 Score=49.45 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=78.1
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEe---ccCceEEecCCcc-eEec----------C--------ceEEEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLI---TSDKTIDARGSNV-QIYN----------G--------AQITMQ 199 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~i-~I~~----------G--------~gI~i~ 199 (437)
|+.+||.. +..+++||=..|+ ..+.+.| ++|+||.|.|.+- .|.. | +.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 67778753 2235555555675 3566777 4689999998743 3320 1 12444
Q ss_pred eeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecce
Q 013757 200 FVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSH 278 (437)
Q Consensus 200 ~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~ 278 (437)
.+++++.+||+|++..+... + | ..+.-|+.+. .+.++-+.+|.|.-..|=|.+- ...--..+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~------~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP------P---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccCC------C---C---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 47899999999997642100 0 0 1123345544 5899999999999998888763 2345566777
Q ss_pred eccCCeeeecCCC
Q 013757 279 FTHQDHVMLLGAS 291 (437)
Q Consensus 279 f~~H~k~mLiG~s 291 (437)
+..+-. .++|..
T Consensus 226 IeG~VD-FIFG~g 237 (369)
T PLN02682 226 IEGSVD-FIFGNG 237 (369)
T ss_pred Eccccc-EEecCc
Confidence 765422 245543
No 39
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.61 E-value=0.44 Score=52.08 Aligned_cols=113 Identities=15% Similarity=0.222 Sum_probs=71.6
Q ss_pred hHHHHhhc-----CCCeEEEEeeeeEEeeCceeEe---ccCceEEecCCcceE-ec------C------ceEEEEeeeeE
Q 013757 146 TLRHAVIQ-----ERPLWITFAHDMVIRLSEELLI---TSDKTIDARGSNVQI-YN------G------AQITMQFVKNI 204 (437)
Q Consensus 146 tLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~i~I-~~------G------~gI~i~~asNV 204 (437)
|+.+||.. ...+++||=..|+- .+.+.| +.|+||.|.|.+-+| +. | +.+.+ .++|+
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 78888853 22467777777874 466777 358999999875444 31 1 12333 47999
Q ss_pred EEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 205 IIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 205 IIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
+.+||+|++... + ..+-|+-+. .+..+.+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 316 ~a~nitf~Ntag-~----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 373 (529)
T PLN02170 316 IARDITFVNSAG-P----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDITG 373 (529)
T ss_pred EEEeeEEEecCC-C----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEcc
Confidence 999999997631 1 112344444 4788889999999887766652 2233345555543
No 40
>PLN02432 putative pectinesterase
Probab=94.37 E-value=0.67 Score=47.15 Aligned_cols=121 Identities=13% Similarity=0.188 Sum_probs=76.6
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEe---ccCceEEecCCcce-Eec--------CceEEEEeeeeEEEEcc
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLI---TSDKTIDARGSNVQ-IYN--------GAQITMQFVKNIIIHGL 209 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~i~-I~~--------G~gI~i~~asNVIIrnL 209 (437)
|+.+||.. +..+++||=..|+- .+.|.| +.|+||.|.+..-+ |.. .+.+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 67778743 22345555556753 566777 35899999986433 321 233444 4799999999
Q ss_pred EEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeec
Q 013757 210 HIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLL 288 (437)
Q Consensus 210 ~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLi 288 (437)
+|++... ..+-|+.+. .+.++-+.+|.|.-..|=|++- ...--..+|++..+-. +++
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEeccc-EEe
Confidence 9997531 112345544 5789999999999988888752 2345566676665422 345
Q ss_pred CCC
Q 013757 289 GAS 291 (437)
Q Consensus 289 G~s 291 (437)
|..
T Consensus 160 G~g 162 (293)
T PLN02432 160 GNA 162 (293)
T ss_pred cCc
Confidence 643
No 41
>PLN02304 probable pectinesterase
Probab=94.18 E-value=0.86 Score=47.95 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=80.3
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEe---ccCceEEecCCcceE-ec------------CceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLI---TSDKTIDARGSNVQI-YN------------GAQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~i~I-~~------------G~gI~i~~asNVI 205 (437)
|+.+||.. +..+++||=..|+ ..+.|.| +.|+||.|.|.+-+| .. -+.+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 78888853 2335666666676 3477888 468999999875333 21 022333 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCe
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDH 284 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k 284 (437)
.+||+|++..+... + ...+.-|+-+. .+..+-+.+|.|.-..|=|.+- ...--..+|++..+-.
T Consensus 166 a~nITf~Nta~~~~------~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~VD 230 (379)
T PLN02304 166 AKNISFMNVAPIPK------P------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGSID 230 (379)
T ss_pred EEeeEEEecCCCCC------C------CCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccccc
Confidence 99999998643110 0 01223455554 5899999999999999988763 2345566777765422
Q ss_pred eeecCCC
Q 013757 285 VMLLGAS 291 (437)
Q Consensus 285 ~mLiG~s 291 (437)
.++|..
T Consensus 231 -FIFG~g 236 (379)
T PLN02304 231 -FIFGDA 236 (379)
T ss_pred -EEeccc
Confidence 345543
No 42
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.10 E-value=0.69 Score=50.33 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=65.7
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEe-c------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIY-N------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~-~------G------~gI~i~~asNVI 205 (437)
|+.+||.. +..+++||=..|+- .+.+.|. .|+||.|.|.+-+|. . | +.+.+ .++++|
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 78888853 23356666666763 4667774 589999999854443 1 1 11222 468999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
.+||+|++.. ++ ..+-|+-++ .+...-+.+|+|.-..|=|.+
T Consensus 288 A~nitf~Nta-g~----------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 288 GIDMCFRNTA-GP----------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred EEeeEEEECC-CC----------------CCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 9999999753 11 123566665 578999999999987776654
No 43
>PLN02773 pectinesterase
Probab=93.93 E-value=0.89 Score=46.75 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=69.7
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec----------------C------ce
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN----------------G------AQ 195 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~----------------G------~g 195 (437)
|+.+||.. +..+++||=..|+ ..+.|.|. .|+||.|++..-+ |.. | +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67788743 2235556666675 34667773 4799999886333 320 0 12
Q ss_pred EEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEE
Q 013757 196 ITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITV 274 (437)
Q Consensus 196 I~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITI 274 (437)
+.+ .++|++.+||+|++..+. ..+-|+.+. .+..+-+.+|.|.-..|=|.+- ...--+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 334 479999999999976321 123344443 4688999999998877777652 123444
Q ss_pred ecceecc
Q 013757 275 SNSHFTH 281 (437)
Q Consensus 275 Snn~f~~ 281 (437)
.+|++..
T Consensus 156 ~~c~IeG 162 (317)
T PLN02773 156 RDCYIEG 162 (317)
T ss_pred EeeEEee
Confidence 5555554
No 44
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.79 E-value=0.78 Score=50.47 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=71.7
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEec-------Cc------eEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIYN-------GA------QITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~~-------G~------gI~i~~asNVI 205 (437)
|+.+||.. +..++|||=..|+- ++.+.|. .|+||.|.|.+-+|.- |. .+.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 78888854 33467777777873 5667774 5899999997544431 21 1222 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
.+||+|++.. +. ...-|+-+. .+..+-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 327 a~nitf~Nta-g~----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~G 383 (548)
T PLN02301 327 AQDIWFQNTA-GP----------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAH---SLRQFYRDSYITG 383 (548)
T ss_pred EEeeEEEECC-CC----------------CCCceEEEEecCCcEEEEeeeeeeccccceec---CCcEEEEeeEEEe
Confidence 9999999753 11 112344444 4788899999999877766542 2233444555543
No 45
>PLN02634 probable pectinesterase
Probab=93.73 E-value=1.3 Score=46.28 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=77.0
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEe---ccCceEEecCCcceEec-----------C--------ceEEEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLI---TSDKTIDARGSNVQIYN-----------G--------AQITMQ 199 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~i~I~~-----------G--------~gI~i~ 199 (437)
|+.+||.. +..+++||=..|+ ..+.|.| +.|+||.|.|.+.+|.- | +.+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 56777743 2234555555676 3466777 35899999987554431 1 12334
Q ss_pred eeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecce
Q 013757 200 FVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSH 278 (437)
Q Consensus 200 ~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~ 278 (437)
.+++++.+||+|++..+... . ...++-|+.+. .+.++-+.+|.|.-..|=|.+- ...--..+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~---g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------P---GMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------C---CCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 47899999999998643110 0 01223444444 4788999999999988888753 2345556666
Q ss_pred eccCCeeeecCCC
Q 013757 279 FTHQDHVMLLGAS 291 (437)
Q Consensus 279 f~~H~k~mLiG~s 291 (437)
+..+-. .++|..
T Consensus 212 IeG~VD-FIFG~g 223 (359)
T PLN02634 212 IEGSID-FIFGNG 223 (359)
T ss_pred Eccccc-EEcCCc
Confidence 664422 235543
No 46
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=93.73 E-value=0.86 Score=49.82 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=70.9
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~------G------~gI~i~~asNVI 205 (437)
|+.+||.. +..+++||=..|+- ++.+.|. .|+||.|.|.+-+ |+. | +.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 78888853 23356666666764 4667774 4799999987433 321 1 12223 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
.+||+|++... + ...-|+-++ .+...-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 297 a~nitf~Ntag-~----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 353 (520)
T PLN02201 297 ARDITFQNTAG-P----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH---TMRQFYRECRITG 353 (520)
T ss_pred EEeeEEEECCC-C----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeC---CCCEEEEeeEEee
Confidence 99999997631 1 123445554 4788999999999888877653 2223344555553
No 47
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.61 E-value=0.98 Score=49.60 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=65.5
Q ss_pred hHHHHhhc---CC----CeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEe-c------C------ceEEEEeee
Q 013757 146 TLRHAVIQ---ER----PLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIY-N------G------AQITMQFVK 202 (437)
Q Consensus 146 tLR~av~~---~~----P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~-~------G------~gI~i~~as 202 (437)
|+.+||.. .. -++|||=..|+- .+.+.|. .|+||.|.|.+-+|. . | +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 78888853 11 267777777874 4667773 589999998754433 1 2 22333 479
Q ss_pred eEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 203 NIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 203 NVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
++|.+||+|++.. ++ ...-|+-++ .+...-+.+|+|.-..|=|.+
T Consensus 314 ~F~a~~it~~Nta-g~----------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~ 359 (538)
T PLN03043 314 RFVAVDVTFRNTA-GP----------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYV 359 (538)
T ss_pred CEEEEeeEEEECC-CC----------------CCCceEEEEEcCCcEEEEeeEEeccCccccc
Confidence 9999999999753 11 123455555 578889999999987765543
No 48
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.58 E-value=0.98 Score=50.17 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=72.0
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEecC-------------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIYNG-------------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~~G-------------~gI~i~~asNVI 205 (437)
|+.+||.. ...+++|+=..|+- .+.+.|. .|+||.|.|.+-+|.-+ +.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 78888854 23366666667764 4667774 48999999975443312 11222 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
.+||+|++... . ...-|+-+. .+..+-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 376 a~nitf~Ntag-~----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 432 (596)
T PLN02745 376 AKSMGFRNTAG-P----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITG 432 (596)
T ss_pred EEeeEEEECCC-C----------------CCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEe
Confidence 99999997531 1 123344444 5789999999999888776652 2234445555553
No 49
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.56 E-value=2.9 Score=43.62 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=65.7
Q ss_pred eEeccCceEEecCCcceEecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEee
Q 013757 173 LLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDH 252 (437)
Q Consensus 173 L~v~SnkTI~G~ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDH 252 (437)
+.+..+.|-++.-.+=-|....||.+.++..+.|..-+|.+... + +....++||++.+++.+-|=-
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~-----~---------r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD-----L---------RVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc-----c---------chhhccCceEEEcCCCcEEEc
Confidence 44444444444432222223668999999999999999986532 1 224568999999999999999
Q ss_pred eeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 253 VSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 253 cS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
..+|...||... .-|+.-+++.|.|++
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999754 236666777777764
No 50
>PLN02314 pectinesterase
Probab=93.52 E-value=0.82 Score=50.69 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=65.6
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEecC-------------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIYNG-------------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~~G-------------~gI~i~~asNVI 205 (437)
|+.+||.. +..++|||=..|+- .+.+.|. .|+|+.|.|.+-+|.-| +.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 78888854 33467777777773 4567773 48999999875433211 12223 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
.+||+|++.. +. ...-|+-++ ++...-+.+|.|.-..|=|.+
T Consensus 369 a~~itf~Nta-g~----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 369 AKDMGFINTA-GA----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred EEeeEEEECC-CC----------------CCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 9999999752 11 123455554 678889999999987776654
No 51
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.52 E-value=0.91 Score=50.35 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=72.5
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEec-------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIYN-------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~~-------G------~gI~i~~asNVI 205 (437)
|+.+||.. +..++|||=..|+- .+.+.|. .|+||.|.|.+-+|.- | +.+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 78888853 33466777777763 4667774 4889999987544331 2 22222 469999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCC-----------------eeeeee
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDG-----------------LIDAVM 267 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~Dg-----------------liDi~~ 267 (437)
.+||+|++.. ++ ...-|+-++ ++...-+-+|+|.-..|= .+|.+-
T Consensus 366 a~~itf~Nta-g~----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIF 428 (587)
T PLN02313 366 ARDITFQNTA-GP----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIF 428 (587)
T ss_pred EEeeEEEeCC-CC----------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceec
Confidence 9999999763 11 122344444 578888999999876554 445555
Q ss_pred CCeeEEEecceec
Q 013757 268 GSTAITVSNSHFT 280 (437)
Q Consensus 268 gS~~ITISnn~f~ 280 (437)
|.-.+-+++|.|.
T Consensus 429 G~a~avfq~c~i~ 441 (587)
T PLN02313 429 GNAAAVLQDCDIN 441 (587)
T ss_pred cceeEEEEccEEE
Confidence 5555555555554
No 52
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.38 E-value=1 Score=49.54 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=75.4
Q ss_pred CCc---hHHHHhhc------CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-EecC------------ceEE
Q 013757 143 KPG---TLRHAVIQ------ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYNG------------AQIT 197 (437)
Q Consensus 143 ~pG---tLR~av~~------~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~G------------~gI~ 197 (437)
|.| |+.+||.. +..+++||=..|+- ++.+.|. .|+|+.|.|.+-+ |+.+ +.+.
T Consensus 231 GsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~ 308 (539)
T PLN02995 231 GSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAG 308 (539)
T ss_pred CCCCccCHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEE
Confidence 555 88889853 12366666666774 4567773 5899999997544 4321 1123
Q ss_pred EEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEec
Q 013757 198 MQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSN 276 (437)
Q Consensus 198 i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISn 276 (437)
+ .+++++.+||+|++... + ..+-|+-+. .+....+.+|.|.-..|=|.+- +..--..+
T Consensus 309 v-~~~~F~a~nitf~Ntag-~----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~ 367 (539)
T PLN02995 309 I-EGLHFIAKGITFRNTAG-P----------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRE 367 (539)
T ss_pred E-ECCCeEEEeeEEEeCCC-C----------------CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEe
Confidence 3 47999999999997531 1 123455555 5789999999999988877653 22345556
Q ss_pred ceecc
Q 013757 277 SHFTH 281 (437)
Q Consensus 277 n~f~~ 281 (437)
|++..
T Consensus 368 C~I~G 372 (539)
T PLN02995 368 CYIYG 372 (539)
T ss_pred eEEee
Confidence 66654
No 53
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.35 E-value=0.93 Score=50.96 Aligned_cols=144 Identities=11% Similarity=0.164 Sum_probs=89.0
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEe-c------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIY-N------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~-~------G------~gI~i~~asNVI 205 (437)
|+.+||.. +..++|||=+.|+ ..+.+.|. .|+||.|.|.+-+|. . | +.+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 78888854 3346666666675 34667774 378999998754443 1 1 12333 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCC-----------------CCeeeeee
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQ-----------------DGLIDAVM 267 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~-----------------DgliDi~~ 267 (437)
.+||+|++... ..+.-|+-++ .+...-+.+|.|.-.. .|.||.+-
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999997631 1123455554 5788888888887643 46678877
Q ss_pred CCeeEEEecceeccCC-----eeeecCCCCCCCCCCcceEEEEeeEEc
Q 013757 268 GSTAITVSNSHFTHQD-----HVMLLGASDGHPQDSIMQVTVAFNHFG 310 (437)
Q Consensus 268 gS~~ITISnn~f~~H~-----k~mLiG~sds~~~d~~~~vTi~hN~F~ 310 (437)
|.-..-+++|.|.--. +.++--++-. ..+...-+.|+++.+.
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIV 450 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEe
Confidence 8778888999886311 1111111110 1123456888888875
No 54
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.33 E-value=0.98 Score=49.59 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=71.6
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceE-ec------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQI-YN------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I-~~------G------~gI~i~~asNVI 205 (437)
|+.+||.. +..++|||=..|+- .+.+.|. .|+||.|.|.+-+| .. | +.+.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 77888853 33466777777764 4556663 58999999875433 31 1 11222 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
.+||+|++.. +. .+.-++-+. .+.++-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 323 a~nit~~Nta-g~----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~G 379 (537)
T PLN02506 323 ARDITFRNTA-GP----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIYG 379 (537)
T ss_pred EEeeEEEeCC-CC----------------CCCceEEEEecCCcEEEEcceeecccccceec---CCceEEEeeEEec
Confidence 9999999753 11 112344443 5789999999999888777652 2234455565554
No 55
>PLN02665 pectinesterase family protein
Probab=93.30 E-value=1.3 Score=46.42 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=80.5
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec-----------CceEEEEeeeeEEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN-----------GAQITMQFVKNIII 206 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~-----------G~gI~i~~asNVII 206 (437)
|+.+||.. +..++|||=..|+- .+.+.|. .|+||.|.+..-+ |.. -+.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 78888853 23366777777764 4677774 5789999986433 321 123444 5899999
Q ss_pred EccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCee
Q 013757 207 HGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHV 285 (437)
Q Consensus 207 rnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~ 285 (437)
+||+|++..+.+.+ ...+.-|+.+. .+..+-+.+|.|.-..|=|.+-. ..--..+|++..+-.
T Consensus 159 ~nitf~Nta~~~~~------------~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~---gr~yf~~CyIeG~VD- 222 (366)
T PLN02665 159 ANIIIKNSAPRPDG------------KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK---GRHFFKDCYIEGTVD- 222 (366)
T ss_pred EeeEEEeCCCCcCC------------CCCCcceEEEEEcCCcEEEEcceeccccceeEeCC---CCEEEEeeEEeeccc-
Confidence 99999986431111 01122344443 46889999999999999888642 344566777764322
Q ss_pred eecCCCCC
Q 013757 286 MLLGASDG 293 (437)
Q Consensus 286 mLiG~sds 293 (437)
.++|....
T Consensus 223 FIFG~g~a 230 (366)
T PLN02665 223 FIFGSGKS 230 (366)
T ss_pred eeccccce
Confidence 34666543
No 56
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.27 E-value=1.3 Score=48.60 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=72.2
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcc-eEec------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNV-QIYN------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i-~I~~------G------~gI~i~~asNVI 205 (437)
|+.+||.. +..+++|+=..|+-+ +.+.|. .|+||.|.|.+- .|.. | +.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 78888853 233566666667754 667774 478999998643 3331 1 12333 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
.+||+|++-.. + ...-|+-++ .+..+-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 309 a~nitf~Ntag-~----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~---~~Rqyy~~C~IeG 365 (530)
T PLN02933 309 AKDISFVNYAG-P----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVH---SAKQFYRECDIYG 365 (530)
T ss_pred EEeeEEEECCC-C----------------CCCceEEEEEcCCcEEEEEeEEEecccccccC---CCceEEEeeEEec
Confidence 99999997531 1 123455554 5789999999999888877653 2234555565554
No 57
>PLN02916 pectinesterase family protein
Probab=93.27 E-value=1.2 Score=48.50 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=71.2
Q ss_pred hHHHHhhc-------CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec------Cc------eEEEEeee
Q 013757 146 TLRHAVIQ-------ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN------GA------QITMQFVK 202 (437)
Q Consensus 146 tLR~av~~-------~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~------G~------gI~i~~as 202 (437)
|+.+||.. +..+++||=..|+- ++.+.|. .|+||.|.|.+-+ |.. |. .+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 78888843 23467777777764 4667774 4889999987433 331 21 2223 478
Q ss_pred eEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 203 NIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 203 NVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
+++.+||+|++... . ...-|+-+. .+...-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 278 ~F~A~nitf~Ntag-~----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 337 (502)
T PLN02916 278 GFWARDITFENTAG-P----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIYG 337 (502)
T ss_pred CEEEEeeEEEeCCC-C----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEec
Confidence 99999999997531 1 112344444 5788889999999888777653 2233445555553
No 58
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.05 E-value=1.4 Score=48.78 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=65.1
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec------C-------ceEEEEeeeeE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN------G-------AQITMQFVKNI 204 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~------G-------~gI~i~~asNV 204 (437)
|+.+||.. +..+++||=..|+- .+.+.|. .|+||.|.|.+-+ |.. | +.+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 78888854 23366666666754 4667774 5899999987433 331 1 11222 47999
Q ss_pred EEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 205 IIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 205 IIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
+.+||+|++... . ...-|+-++ .+...-+.+|.|.-..|=|.+
T Consensus 350 ~a~nitf~Ntag-~----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 350 TAKNIGFENTAG-P----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred EEEeeEEEeCCC-C----------------CCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 999999997531 1 123455555 578899999999887766554
No 59
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=92.95 E-value=1.3 Score=48.82 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=65.3
Q ss_pred hHHHHhhc-----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEe-c-------C------ceEEEEeeee
Q 013757 146 TLRHAVIQ-----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIY-N-------G------AQITMQFVKN 203 (437)
Q Consensus 146 tLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~-~-------G------~gI~i~~asN 203 (437)
|+.+||.. .+-+.|||=..|+- ++.+.|. .|+||.|.|.+-+|. . | +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 78888843 13466777777864 4566663 489999998754433 1 2 22334 4799
Q ss_pred EEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 204 IIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 204 VIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
++.+||+|++.. ++ ...-|+-++ .+..+-+.+|.|.-..|=|.+
T Consensus 332 f~a~~it~~Nta-g~----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 376 (553)
T PLN02708 332 FMARDLTIQNTA-GP----------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYA 376 (553)
T ss_pred eEEEeeEEEcCC-CC----------------CCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 999999999752 11 123455555 578999999999987665543
No 60
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.69 E-value=1.6 Score=48.36 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=70.3
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCc-eeEec---cCceEEecCCcce-EecCc------------eEEEEeeeeE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSE-ELLIT---SDKTIDARGSNVQ-IYNGA------------QITMQFVKNI 204 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~-~L~v~---SnkTI~G~ga~i~-I~~G~------------gI~i~~asNV 204 (437)
|+.+||.. +..++|||=..|+-+ + .+.|. .|+||.|.|.+-+ |+.+. .+.+ .++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 78888854 334677777777743 4 37774 4899999987544 33211 1222 47999
Q ss_pred EEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceec
Q 013757 205 IIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFT 280 (437)
Q Consensus 205 IIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~ 280 (437)
+.+||+|++... . ...-|+-++ .+.+.-+.+|.|.-..|=|.+- +..--..+|++.
T Consensus 363 ~a~~itf~Ntag-~----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~ 419 (587)
T PLN02484 363 IARDMTFENWAG-P----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVH---SNRQFFRECDIY 419 (587)
T ss_pred EEEeeEEEECCC-C----------------CCCceEEEEecCCcEEEEeeeEeccCcccccC---CCcEEEEecEEE
Confidence 999999997531 1 123455554 5788899999998877766542 223334445444
No 61
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=92.65 E-value=1.4 Score=48.58 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=64.6
Q ss_pred hHHHHhhc-------CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec------C------ceEEEEeee
Q 013757 146 TLRHAVIQ-------ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN------G------AQITMQFVK 202 (437)
Q Consensus 146 tLR~av~~-------~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~------G------~gI~i~~as 202 (437)
|+.+||.. ...+++|+=..|+- ++.+.|. .|+||.|.|.+-+ |.. | +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 77888853 12256676667774 4667773 4789999987433 331 2 23444 479
Q ss_pred eEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 203 NIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 203 NVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
+++.+||+|++... + ...-|+-++ ++...-+.+|.|.-..|=|.+
T Consensus 341 ~F~a~nitf~Ntag-~----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 341 NFVAVNITFRNTAG-P----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred CeEEEeeEEEeCCC-C----------------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 99999999997531 1 123445544 578888999999887776654
No 62
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=92.50 E-value=0.34 Score=51.61 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCCCceEeeC------CceEEEeeeeeecCC--CCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEe
Q 013757 235 SDGDGISMFG------ASHIWIDHVSMSGCQ--DGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAF 306 (437)
Q Consensus 235 sd~DaIsI~g------s~nVWIDHcS~s~~~--DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~h 306 (437)
.++-+|.|-. .++..|.|+-|..|. -|.|+++ |..-||++|.|.+..-.+-+=|.. ..|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 4556676632 468888888888864 5678875 678899999999876655554433 468899
Q ss_pred eEEcCCCCCC--Ccccc-cceEE-EEcceEeCccc----------eEEecC------CCceEEEEccEEecCC
Q 013757 307 NHFGKQLVQR--MPRVR-FGFAH-VVNNDYTHWLM----------YAIGGS------QHPTILSQGNRFLASN 359 (437)
Q Consensus 307 N~F~~~~~~R--~Pr~R-~G~~H-vvNN~y~nw~~----------yaigg~------~~~~I~~egN~F~ag~ 359 (437)
|+|- +...+ .+-+| +|.-| |+|||+++-.. +++-.+ .-..+.+++|-|+...
T Consensus 252 N~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 252 NVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp -EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred cEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 9996 44433 46677 37666 88999986432 222111 1235778899998876
No 63
>PLN02671 pectinesterase
Probab=92.03 E-value=2.6 Score=44.15 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=75.9
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCC---cceEec----------C--------ceEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGS---NVQIYN----------G--------AQIT 197 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga---~i~I~~----------G--------~gI~ 197 (437)
|+.+||.. +..+++||=..|+ ..+.|.|. .++||.|.|. ...|.. | +.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 67777743 2234555555675 45677883 5889999873 344541 1 1233
Q ss_pred EEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEec
Q 013757 198 MQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSN 276 (437)
Q Consensus 198 i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISn 276 (437)
+ .+++++.+||+|++..+...| ...+-|+.+. .+.++-+.+|.|.-..|=|++- ...--..+
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~ 213 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPG-------------GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQ 213 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCC-------------CCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEe
Confidence 3 478999999999976321100 1122344443 4789999999999999888763 23445666
Q ss_pred ceeccCCeeeecCCC
Q 013757 277 SHFTHQDHVMLLGAS 291 (437)
Q Consensus 277 n~f~~H~k~mLiG~s 291 (437)
|++..+-. .++|..
T Consensus 214 CyIeG~VD-FIFG~g 227 (359)
T PLN02671 214 CYIQGSVD-FIFGNA 227 (359)
T ss_pred cEEEEecc-EEecce
Confidence 77664322 235543
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.85 E-value=1.8 Score=47.79 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=64.5
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcceEec-------C------ceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQIYN-------G------AQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~I~~-------G------~gI~i~~asNVI 205 (437)
|..+||.. +.-++|||=..|+- .+.+.|. .|+||.|.|.+-+|.- | +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 77778853 23356666666764 4667774 4789999987544331 1 12223 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
.+||+|++.. +. .+.-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 349 a~~itf~Nta-g~----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 349 ARDMGFRNTA-GP----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred EEEEEEEeCC-CC----------------CCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 9999999753 11 123455554 578899999999887776654
No 65
>PLN02497 probable pectinesterase
Probab=91.85 E-value=3.3 Score=42.91 Aligned_cols=128 Identities=12% Similarity=0.190 Sum_probs=77.8
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcc-eEe--c------CceEEEEeeeeEEEEcc
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNV-QIY--N------GAQITMQFVKNIIIHGL 209 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i-~I~--~------G~gI~i~~asNVIIrnL 209 (437)
|+.+||.. +..+++||=..|+ .++.+.|. .++||.|+|.+- .|. . -+.+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 67788743 2335555555675 35667773 589999998743 232 1 223444 5899999999
Q ss_pred EEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeec
Q 013757 210 HIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLL 288 (437)
Q Consensus 210 ~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLi 288 (437)
+|++....... + ....+.-|+.+. .+.++-+.+|.|.-..|=|.+- ...--..+|++..+-. .++
T Consensus 123 T~~Nt~~~~~~---------~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG~VD-FIF 188 (331)
T PLN02497 123 TFANSYNFPSK---------G-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQGAVD-FIF 188 (331)
T ss_pred EEEeCCCCccc---------c-CCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEeccc-EEc
Confidence 99986421000 0 001123455554 5789999999999999988763 2345556666664322 235
Q ss_pred CC
Q 013757 289 GA 290 (437)
Q Consensus 289 G~ 290 (437)
|.
T Consensus 189 G~ 190 (331)
T PLN02497 189 GS 190 (331)
T ss_pred cC
Confidence 54
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=91.75 E-value=2.5 Score=40.33 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=74.7
Q ss_pred cCceEEec---------CCcceEecCceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCc-eEee-CC
Q 013757 177 SDKTIDAR---------GSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDG-ISMF-GA 245 (437)
Q Consensus 177 SnkTI~G~---------ga~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~Da-IsI~-gs 245 (437)
.|++|-+. + .....++..|.|.+++||+|.+.+|....... .....|+ |.+. ++
T Consensus 51 rNl~~~~~~~~~~~~~~~-~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s 115 (200)
T PF00544_consen 51 RNLRFRNVPVDPGPDWSG-DGDSSDGDAISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGS 115 (200)
T ss_dssp ES-EEECEEEECSTEEET-TEEECS--SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESST
T ss_pred ECCEEEeccccCCcccCC-CccccCCCeEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCC
Confidence 46777772 2 22223477899999999999999999752110 0111444 5664 57
Q ss_pred ceEEEeeeeeecCCCCeee------eeeCCeeEEEecceeccCCeee-ecCCCCCCCCCCcceEEEEeeEEcCCCCCCCc
Q 013757 246 SHIWIDHVSMSGCQDGLID------AVMGSTAITVSNSHFTHQDHVM-LLGASDGHPQDSIMQVTVAFNHFGKQLVQRMP 318 (437)
Q Consensus 246 ~nVWIDHcS~s~~~DgliD------i~~gS~~ITISnn~f~~H~k~m-LiG~sds~~~d~~~~vTi~hN~F~~~~~~R~P 318 (437)
++|=|-+|-|.......+- .......||+-+|+|.+...=+ ++ +.-++.+..|+|. +..+..=
T Consensus 116 ~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~---------r~G~~Hv~NN~~~-~~~~y~i 185 (200)
T PF00544_consen 116 DNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV---------RFGYVHVYNNYYY-NWSGYAI 185 (200)
T ss_dssp EEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE---------CSCEEEEES-EEE-EECSESE
T ss_pred ceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc---------cccEEEEEEeeeE-CCCCEEE
Confidence 8888888888774322211 1122369999999997532111 11 1236889999995 5555555
Q ss_pred cccc-ceEEEEcceE
Q 013757 319 RVRF-GFAHVVNNDY 332 (437)
Q Consensus 319 r~R~-G~~HvvNN~y 332 (437)
.+|. +.+-+-||||
T Consensus 186 ~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 186 GARSGAQVLVENNYF 200 (200)
T ss_dssp EEETTEEEEEES-EE
T ss_pred EccCCeEEEEECcCC
Confidence 5554 5678888886
No 67
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=91.57 E-value=1.8 Score=44.09 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=70.7
Q ss_pred hHHHHhhc----CCCeEEEEeeeeEEeeCceeEec---cCceEEecCCcce-Eec------------CceEEEEeeeeEE
Q 013757 146 TLRHAVIQ----ERPLWITFAHDMVIRLSEELLIT---SDKTIDARGSNVQ-IYN------------GAQITMQFVKNII 205 (437)
Q Consensus 146 tLR~av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~i~-I~~------------G~gI~i~~asNVI 205 (437)
|+.+||.. +..+++||=..|+- ++.|.|. .++||.|.|..-+ |.. -+.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67888864 33456677777864 4668875 4899999987433 331 123444 479999
Q ss_pred EEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCee
Q 013757 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHV 285 (437)
Q Consensus 206 IrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~ 285 (437)
.+||+|++.. +. .....-||.+ .+.++.+.+|.|.-..|=|..- ....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~-g~--------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTA-GP--------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHC-SG--------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCC-CC--------------cccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEecCc-
Confidence 9999999752 10 0123456666 4688999999999999987653 3456677888775422
Q ss_pred eecCCC
Q 013757 286 MLLGAS 291 (437)
Q Consensus 286 mLiG~s 291 (437)
+++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 345643
No 68
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=89.36 E-value=1.9 Score=47.49 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=82.5
Q ss_pred CCCeEEEEeeeeEEeeCc------e---eE-e-ccCceEEecCC-cceEecCceEEEEeeeeEEEEccEEeeeecCCCCc
Q 013757 154 ERPLWITFAHDMVIRLSE------E---LL-I-TSDKTIDARGS-NVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGM 221 (437)
Q Consensus 154 ~~P~~IvF~~~g~I~L~~------~---L~-v-~SnkTI~G~ga-~i~I~~G~gI~i~~asNVIIrnL~I~~~~~g~gg~ 221 (437)
..|+.|.|...-.+.+.. + +. + -+|.||.+..- .-+..+-.||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 578999988766655432 1 11 1 13555544421 001112448889899999999999983
Q ss_pred eecCCCCCCCccCCCCCceEee------------CCceEEEeeeeeecCCCCeeeee---eCCeeEEEecceeccCCeee
Q 013757 222 IRDSVSHHGFRSSSDGDGISMF------------GASHIWIDHVSMSGCQDGLIDAV---MGSTAITVSNSHFTHQDHVM 286 (437)
Q Consensus 222 i~ds~~~~g~~~~sd~DaIsI~------------gs~nVWIDHcS~s~~~DgliDi~---~gS~~ITISnn~f~~H~k~m 286 (437)
+.|.|.|. -+++|||-||.|+.++-+++.-. .+-.+||+-+|.|.+-+...
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23444443 25789999999999888876633 34589999999999866554
Q ss_pred ecCCCCCCCCCCcceEEEEeeEE
Q 013757 287 LLGASDGHPQDSIMQVTVAFNHF 309 (437)
Q Consensus 287 LiG~sds~~~d~~~~vTi~hN~F 309 (437)
=|...+.-. ...-+|+|.-|.-
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc
Confidence 444333221 2233455554443
No 69
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=87.93 E-value=11 Score=40.38 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=65.3
Q ss_pred hHHHHhhc-----CCCeEEEEeeeeEEeeCceeEe---ccCceEEecCC---cceEecC---------------------
Q 013757 146 TLRHAVIQ-----ERPLWITFAHDMVIRLSEELLI---TSDKTIDARGS---NVQIYNG--------------------- 193 (437)
Q Consensus 146 tLR~av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga---~i~I~~G--------------------- 193 (437)
|+.+||.. ...+++||=..|+- ++.|.| +.|+||.|.|. .+.|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 77888863 22356666666754 466777 35899999763 3455411
Q ss_pred -------------------------ceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCce
Q 013757 194 -------------------------AQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASH 247 (437)
Q Consensus 194 -------------------------~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~n 247 (437)
+.+.+ .+++++.+||+|++...-. . ....+-|+-+. .+..
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~--~-----------~~~~~QAVALrv~GDr 239 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDS--V-----------DAGNHPAVALRTDGDK 239 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCC--C-----------CCCcceeEEEEEcCCc
Confidence 01222 4799999999999763210 0 01123345444 5789
Q ss_pred EEEeeeeeecCCCCeee
Q 013757 248 IWIDHVSMSGCQDGLID 264 (437)
Q Consensus 248 VWIDHcS~s~~~DgliD 264 (437)
+.+.+|.|.-..|=|.+
T Consensus 240 a~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 240 VQIENVNILGRQDTFFV 256 (422)
T ss_pred EEEEeeEEecccceeee
Confidence 99999999988888776
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=86.01 E-value=5.5 Score=41.05 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=74.6
Q ss_pred CCceEeeCCceEEEeeeeeecCC-----CCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCC--CCCcceEEEEeeEE
Q 013757 237 GDGISMFGASHIWIDHVSMSGCQ-----DGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHP--QDSIMQVTVAFNHF 309 (437)
Q Consensus 237 ~DaIsI~gs~nVWIDHcS~s~~~-----DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~--~d~~~~vTi~hN~F 309 (437)
+-++.|..+.||+|-..+|.... +..|.+..++.+|=|-+|-|..|....---|.|... ....--|||-.|+|
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 56788999999999999999876 345788788999999999998765431001222211 12345799999999
Q ss_pred cCCCCC--------CCcccccce--EEEEcceEeCccceEEecCCCceEEEEccEEec
Q 013757 310 GKQLVQ--------RMPRVRFGF--AHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLA 357 (437)
Q Consensus 310 ~~~~~~--------R~Pr~R~G~--~HvvNN~y~nw~~yaigg~~~~~I~~egN~F~a 357 (437)
.++-.+ -++. -|. +-+-+|+|.|--+.+--.+- ..+-+-+|||+.
T Consensus 196 hdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriRf-G~vHvyNNYy~~ 250 (345)
T COG3866 196 HDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIRF-GMVHVYNNYYEG 250 (345)
T ss_pred ecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceEe-eEEEEecccccc
Confidence 743221 1222 122 45668888875432211111 145678899983
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=85.97 E-value=4.4 Score=38.91 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=61.2
Q ss_pred eeEEEecceeccCC--eeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCccccc--c-----e--EEEEcceEeCcc--
Q 013757 270 TAITVSNSHFTHQD--HVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRF--G-----F--AHVVNNDYTHWL-- 336 (437)
Q Consensus 270 ~~ITISnn~f~~H~--k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R~--G-----~--~HvvNN~y~nw~-- 336 (437)
++|.|=||.+.+-. -.-|+|...+++.+....|.||||.|. ....+|...+ | + .-+.||+|+..-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY--~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY--DTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee--cCCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46788888888754 346789877777777779999999997 3556666553 3 2 468899998643
Q ss_pred ----ceEEe----cCCCceEEEEccEEecCC
Q 013757 337 ----MYAIG----GSQHPTILSQGNRFLASN 359 (437)
Q Consensus 337 ----~yaig----g~~~~~I~~egN~F~ag~ 359 (437)
||..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33333 224567778889887654
No 72
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=76.48 E-value=18 Score=36.10 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=45.6
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeC------CceEEEeeeeeecCCCCeeeee
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFG------ASHIWIDHVSMSGCQDGLIDAV 266 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~g------s~nVWIDHcS~s~~~DgliDi~ 266 (437)
|.+|.|+.+ +..|+|-+|+++. .+||.+.+ ..++.|.-.++.....| |++.
T Consensus 114 g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G-i~i~ 170 (246)
T PF07602_consen 114 GTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGNVISGNSIYFNKTG-ISIS 170 (246)
T ss_pred ceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccceEeecceEEecCcC-eEEE
Confidence 668999755 8999999999652 34555543 34555666677776666 3332
Q ss_pred eCC--eeEEEecceeccCCeee
Q 013757 267 MGS--TAITVSNSHFTHQDHVM 286 (437)
Q Consensus 267 ~gS--~~ITISnn~f~~H~k~m 286 (437)
..+ ...+|.||+|.+-..++
T Consensus 171 ~~~~~~~n~I~NN~I~~N~~Gi 192 (246)
T PF07602_consen 171 DNAAPVENKIENNIIENNNIGI 192 (246)
T ss_pred cccCCccceeeccEEEeCCcCe
Confidence 212 22478999999755443
No 73
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=67.85 E-value=59 Score=34.28 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=25.2
Q ss_pred ceeEeccCceEEecCCcceEec---CceEEEEeeeeEEEEccEEee
Q 013757 171 EELLITSDKTIDARGSNVQIYN---GAQITMQFVKNIIIHGLHIRK 213 (437)
Q Consensus 171 ~~L~v~SnkTI~G~ga~i~I~~---G~gI~i~~asNVIIrnL~I~~ 213 (437)
..++|+.-+|+-|.- +..+.+ |.-+++ .+-++||++|+.|+
T Consensus 45 g~~vInr~l~l~ge~-ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~ 88 (408)
T COG3420 45 GNFVINRALTLRGEN-GAVLDGGGKGSYVTV-AAPDVIVEGLTVRG 88 (408)
T ss_pred ccEEEccceeecccc-ccEEecCCcccEEEE-eCCCceeeeEEEec
Confidence 345555555555552 222321 555667 48999999999994
No 74
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=67.03 E-value=8.9 Score=27.28 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=28.2
Q ss_pred ceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc
Q 013757 239 GISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH 281 (437)
Q Consensus 239 aIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~ 281 (437)
||.+..+++..|..+.++...|| |.+. .|.+-+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEEc
Confidence 46677777777888888888885 5553 35667777776653
No 75
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=57.21 E-value=1.1e+02 Score=31.16 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=20.9
Q ss_pred eEEEEeeEEcCCCCCCCcccccceEEEEcceEeC
Q 013757 301 QVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTH 334 (437)
Q Consensus 301 ~vTi~hN~F~~~~~~R~Pr~R~G~~HvvNN~y~n 334 (437)
++|+.++... + -.|.|---.+.+.|.-+.+
T Consensus 195 NltliNC~I~-g---~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 195 NLTLINCTIE-G---TQPLCYCDNLVLENCTMID 224 (277)
T ss_pred CeEEEEeEEe-c---cCccEeecceEEeCcEeec
Confidence 7899999873 3 4577755556677777764
No 76
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=52.03 E-value=1.8e+02 Score=28.21 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=45.4
Q ss_pred CCceEEEeeeeeecC-CCCeeeee-----eCCeeEEEecceeccCCeeeec--CCCCCCC-CCCcceEEEEeeEEcCCCC
Q 013757 244 GASHIWIDHVSMSGC-QDGLIDAV-----MGSTAITVSNSHFTHQDHVMLL--GASDGHP-QDSIMQVTVAFNHFGKQLV 314 (437)
Q Consensus 244 gs~nVWIDHcS~s~~-~DgliDi~-----~gS~~ITISnn~f~~H~k~mLi--G~sds~~-~d~~~~vTi~hN~F~~~~~ 314 (437)
.+++|+|.|..|..+ ....++.. .|-.+..|-||.|..-....+. -.....+ .+....+++..|.+. ++.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eee
Confidence 367999999999986 34444433 2345789999999964433222 1111122 234566777888885 777
Q ss_pred CC
Q 013757 315 QR 316 (437)
Q Consensus 315 ~R 316 (437)
+|
T Consensus 111 ~r 112 (198)
T PF08480_consen 111 KR 112 (198)
T ss_pred ec
Confidence 66
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=49.85 E-value=40 Score=33.08 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=35.1
Q ss_pred CCCCceEeeCCc-eEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCe
Q 013757 235 SDGDGISMFGAS-HIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDH 284 (437)
Q Consensus 235 sd~DaIsI~gs~-nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k 284 (437)
-..||+++.+.. .+.|.-.++..+.|..|-.. +.-.++|++-+..++-|
T Consensus 94 VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 94 VCEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp -SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEE
T ss_pred cceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEcCCCE
Confidence 456888888777 88888888888888888764 45568888844444444
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=48.55 E-value=30 Score=35.73 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=34.5
Q ss_pred EeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCe
Q 013757 199 QFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGL 262 (437)
Q Consensus 199 ~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~Dgl 262 (437)
.+.++.||||+.-+++.|. |.....-|.--+.|+|+.|..||...+.++.--|
T Consensus 265 engkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagml 317 (464)
T PRK10123 265 ENGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGML 317 (464)
T ss_pred cCCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccE
Confidence 4567788888887776543 2222233444567889999999988777765333
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=39.25 E-value=4.7e+02 Score=28.00 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=52.9
Q ss_pred eEEEEeeeeEEEEccEEeeeec-----CCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeCC
Q 013757 195 QITMQFVKNIIIHGLHIRKTKA-----GKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGS 269 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~-----g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS 269 (437)
++.+....+++||+-.|.+... ..++.||.= +| ..=.-||.-.+...+=|-+|.|..|.=|.+. .
T Consensus 138 g~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~VrGC--~F----~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~ 207 (386)
T PF01696_consen 138 GVVFHANTNTLFHGCSFFGFHGTCLESWAGGEVRGC--TF----YGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----E 207 (386)
T ss_pred eeEEEecceEEEEeeEEecCcceeEEEcCCcEEeee--EE----EEEEEEeecCCcceEEeeheeeeheEEEEEe----c
Confidence 4555567888898888886530 011111100 00 0001223223455677788888887755422 3
Q ss_pred eeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEc
Q 013757 270 TAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFG 310 (437)
Q Consensus 270 ~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~ 310 (437)
...+|++|-|.+-.--.|++. .-++.||.|-
T Consensus 208 G~~~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 208 GPARIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred CCeEEecceecccceEEEEcc----------cEEEeccEEe
Confidence 467788888887555555544 2467777774
No 80
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=39.15 E-value=7.6 Score=29.38 Aligned_cols=19 Identities=42% Similarity=0.991 Sum_probs=12.9
Q ss_pred CccccccCcchhccccccc
Q 013757 92 IDQCWRCDRNWANNRKRLA 110 (437)
Q Consensus 92 id~cwr~~~~w~~~r~~la 110 (437)
-|+|.||+-.|+-.|-+.|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 4799999999998886554
No 81
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.35 E-value=11 Score=32.16 Aligned_cols=13 Identities=38% Similarity=0.324 Sum_probs=5.7
Q ss_pred CcccccchhhhHHhH
Q 013757 1 MAAANAGILLTLFGL 15 (437)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (437)
|| ++.++||.++|
T Consensus 1 Ma--SK~~llL~l~L 13 (95)
T PF07172_consen 1 MA--SKAFLLLGLLL 13 (95)
T ss_pred Cc--hhHHHHHHHHH
Confidence 66 34444443444
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=37.12 E-value=68 Score=22.64 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=31.4
Q ss_pred eEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEeeCCceEEEeeeeeecC
Q 013757 195 QITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGC 258 (437)
Q Consensus 195 gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~ 258 (437)
||.+..+++..|++=+|.+. .|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----------------------~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----------------------SYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----------------------CCEEEEEeCCCCEeECCEEEcC
Confidence 46676777777777777732 4699999998888888887653
No 83
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=32.19 E-value=41 Score=36.58 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=39.8
Q ss_pred EEeeeeE---EeeCceeEeccCceEEecCCcceEec-CceEEEEeeeeEEEEccEEeeeec
Q 013757 160 TFAHDMV---IRLSEELLITSDKTIDARGSNVQIYN-GAQITMQFVKNIIIHGLHIRKTKA 216 (437)
Q Consensus 160 vF~~~g~---I~L~~~L~v~SnkTI~G~ga~i~I~~-G~gI~i~~asNVIIrnL~I~~~~~ 216 (437)
+||-.|. |+-.+.-.+..||--+||+.+|.|.+ |.||.- +|-|+||--|++..|
T Consensus 458 IFDNaMagVwIKTds~PtlrRNKI~dgRdgGicifngGkGlle---~neif~Nalit~S~p 515 (625)
T KOG1777|consen 458 IFDNAMAGVWIKTDSNPTLRRNKIYDGRDGGICIFNGGKGLLE---HNEIFRNALITDSAP 515 (625)
T ss_pred chhhhhcceEEecCCCcceeecceecCCCCcEEEecCCceeee---chhhhhccccccCCh
Confidence 5777664 56666777888999999999999985 445543 688888887765443
No 84
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=24.04 E-value=6.8e+02 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCCceEeeCCceEEEeeeeeecCCCCeeeeeeCCeeEEEecceecc-CCeeee
Q 013757 236 DGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTH-QDHVML 287 (437)
Q Consensus 236 d~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~-H~k~mL 287 (437)
..|||...+ +..|+.+-+.+-.+..+.++..+..++|...-+.+ .+|++-
T Consensus 74 ~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 74 QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp -TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEE
T ss_pred CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEE
Confidence 468999888 45555555556555667776655578888877664 456643
No 85
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=22.88 E-value=2.2e+02 Score=31.86 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=46.6
Q ss_pred eeeeEEEEccEEeeeecCCCCceecCC-----------CCCCCccCCCCCceEeeCCceEEEeeeeeecCCCCeeeeeeC
Q 013757 200 FVKNIIIHGLHIRKTKAGKGGMIRDSV-----------SHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMG 268 (437)
Q Consensus 200 ~asNVIIrnL~I~~~~~g~gg~i~ds~-----------~~~g~~~~sd~DaIsI~gs~nVWIDHcS~s~~~DgliDi~~g 268 (437)
+.++..+.+++|.+. |.-.=.++... ...|. .....|||.+...+.| .+|-+.- .|..|-+++
T Consensus 327 g~q~~~~~GiTI~~p-P~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qtDGi~ly~nS~i--~dcF~h~-nDD~iKlYh- 400 (582)
T PF03718_consen 327 GGQTLTCEGITINDP-PFHSMDLYGNENDKFSMNISNYKQVGA-WYFQTDGIELYPNSTI--RDCFIHV-NDDAIKLYH- 400 (582)
T ss_dssp SSEEEEEES-EEE---SS-SEEEESSSGGGEEEEEEEEEEE----CTT----B--TT-EE--EEEEEEE-SS-SEE--S-
T ss_pred CcceEEEEeeEecCC-CcceEEecCCccccccceeeceeeeee-EEeccCCccccCCCee--eeeEEEe-cCchhheee-
Confidence 456788888888864 21111112111 11221 1356899999877766 5665544 444455554
Q ss_pred CeeEEEecceecc-CC-eeeecCCCCCCCCC-CcceEEEEeeEEcCCCCCCCccc
Q 013757 269 STAITVSNSHFTH-QD-HVMLLGASDGHPQD-SIMQVTVAFNHFGKQLVQRMPRV 320 (437)
Q Consensus 269 S~~ITISnn~f~~-H~-k~mLiG~sds~~~d-~~~~vTi~hN~F~~~~~~R~Pr~ 320 (437)
++++|+++-+.. |+ -++-+|-......+ ..-++.|.||.+. -...+-|.+
T Consensus 401 -S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~-~~~~~~n~~ 453 (582)
T PF03718_consen 401 -SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWI-WHNNYVNTA 453 (582)
T ss_dssp -TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---S-SGGCTTT-E
T ss_pred -cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeee-cccCCCCce
Confidence 789999998874 43 34556654322211 2346777777543 233344443
No 86
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=22.59 E-value=2.6e+02 Score=30.82 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=36.1
Q ss_pred CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEee-CCceEEEeeeeeecCCCCeee
Q 013757 193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMF-GASHIWIDHVSMSGCQDGLID 264 (437)
Q Consensus 193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI~-gs~nVWIDHcS~s~~~DgliD 264 (437)
-+.+.+ .+++++.+||+|++.. +. .+.-|+-+. .+.++-+.+|.|.-..|=|.+
T Consensus 262 SaT~~v-~~~~F~a~nitf~Nta-g~----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 262 TATFTI-TGDGFIARDIGFKNAA-GP----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred ceeEEE-ECCCeEEEeeEEEECC-CC----------------CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 334555 4899999999999753 11 112344443 578888889988887776654
No 87
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.23 E-value=58 Score=33.50 Aligned_cols=18 Identities=50% Similarity=0.933 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHHHHH
Q 013757 26 THDFDEVWQKRAENARRH 43 (437)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (437)
-..|||||+++-+|+++.
T Consensus 21 P~DFdeFW~~~l~e~~~~ 38 (321)
T COG3458 21 PDDFDEFWKKTLEEARKV 38 (321)
T ss_pred CCcHHHHHHHHHHHHhcC
Confidence 457999999999998764
No 88
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=21.16 E-value=2.8e+02 Score=28.34 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=6.2
Q ss_pred CeeEEEecceec
Q 013757 269 STAITVSNSHFT 280 (437)
Q Consensus 269 S~~ITISnn~f~ 280 (437)
|.|+|+-||++.
T Consensus 193 SkNltliNC~I~ 204 (277)
T PF12541_consen 193 SKNLTLINCTIE 204 (277)
T ss_pred cCCeEEEEeEEe
Confidence 445555555554
Done!