Query 013758
Match_columns 437
No_of_seqs 181 out of 1094
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_O 30S ribosomal protein S 100.0 1.3E-32 4.3E-37 228.3 11.5 83 347-429 4-88 (88)
2 1a32_A Ribosomal protein S15; 100.0 1.4E-32 4.7E-37 228.0 11.2 83 347-429 4-88 (88)
3 2vqe_O 30S ribosomal protein S 100.0 1.5E-32 5.1E-37 228.2 10.6 83 347-429 5-89 (89)
4 4a5u_B 30S ribosomal protein S 100.0 2.2E-32 7.4E-37 226.9 10.8 83 347-429 4-88 (88)
5 3ulw_A 30S ribosomal protein S 100.0 4.2E-32 1.5E-36 227.1 8.5 84 346-429 7-92 (93)
6 3bbn_O Ribosomal protein S15; 100.0 1.7E-29 5.8E-34 210.5 5.0 73 358-430 13-87 (90)
7 3j20_Q 30S ribosomal protein S 99.3 7.3E-13 2.5E-17 120.0 6.1 76 331-414 63-140 (158)
8 3u5c_N S27A, YS15, 40S ribosom 96.7 0.0017 5.9E-08 58.7 5.2 43 372-414 89-133 (151)
9 2xzm_O RPS13E; ribosome, trans 94.8 0.032 1.1E-06 50.6 5.3 42 373-414 92-135 (153)
10 3twe_A Alpha4H; unknown functi 67.7 2.9 9.9E-05 27.8 2.0 13 259-271 10-22 (27)
11 3nqw_A CG11900; stringent resp 36.7 2.2E+02 0.0074 25.4 9.7 63 365-427 112-178 (179)
12 2nr5_A Hypothetical protein SO 30.3 1.4E+02 0.0049 23.2 6.3 33 353-385 27-60 (67)
No 1
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=99.98 E-value=1.3e-32 Score=228.27 Aligned_cols=83 Identities=46% Similarity=0.736 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK 424 (437)
Q Consensus 347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k 424 (437)
+.++++||++|++|++||||+|||||+||+||++|++|| |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus 4 ~~~K~~ii~~~~~~~~DtGS~EvQiA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~~ 83 (88)
T 3r8n_O 4 TEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIER 83 (88)
T ss_dssp HHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013758 425 LGLRD 429 (437)
Q Consensus 425 LGLR~ 429 (437)
||||.
T Consensus 84 Lglr~ 88 (88)
T 3r8n_O 84 LGLRR 88 (88)
T ss_dssp HTCCC
T ss_pred hCCCC
Confidence 99984
No 2
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=99.98 E-value=1.4e-32 Score=227.97 Aligned_cols=83 Identities=49% Similarity=0.742 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK 424 (437)
Q Consensus 347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k 424 (437)
+.++++||++|++|++||||+|||||+||+||++|++|| |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus 4 ~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~~ 83 (88)
T 1a32_A 4 QERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEK 83 (88)
T ss_dssp HHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013758 425 LGLRD 429 (437)
Q Consensus 425 LGLR~ 429 (437)
||||.
T Consensus 84 Lglr~ 88 (88)
T 1a32_A 84 LGLRR 88 (88)
T ss_dssp HTC--
T ss_pred hCCCC
Confidence 99984
No 3
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=99.98 E-value=1.5e-32 Score=228.20 Aligned_cols=83 Identities=49% Similarity=0.716 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK 424 (437)
Q Consensus 347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k 424 (437)
+.++++||++|++|++||||+|||||+||+||++|++|| |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus 5 ~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d~~rY~~li~~ 84 (89)
T 2vqe_O 5 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK 84 (89)
T ss_dssp HHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013758 425 LGLRD 429 (437)
Q Consensus 425 LGLR~ 429 (437)
||||.
T Consensus 85 Lglr~ 89 (89)
T 2vqe_O 85 LGIRG 89 (89)
T ss_dssp HTCCC
T ss_pred hCCCC
Confidence 99984
No 4
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=99.97 E-value=2.2e-32 Score=226.88 Aligned_cols=83 Identities=46% Similarity=0.736 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK 424 (437)
Q Consensus 347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k 424 (437)
+.++++||++|++|++||||+|||||+||+||++|++|| |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus 4 ~~~K~~ii~~~~~~~~DTGS~EvQiA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d~~rY~~li~~ 83 (88)
T 4a5u_B 4 TEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIER 83 (88)
T ss_dssp HHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 467789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013758 425 LGLRD 429 (437)
Q Consensus 425 LGLR~ 429 (437)
||||.
T Consensus 84 LglR~ 88 (88)
T 4a5u_B 84 LGLRR 88 (88)
T ss_dssp TTTTC
T ss_pred hCCCC
Confidence 99984
No 5
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=99.97 E-value=4.2e-32 Score=227.09 Aligned_cols=84 Identities=43% Similarity=0.642 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013758 346 MKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLS 423 (437)
Q Consensus 346 ~K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~ 423 (437)
.+.++++||++|++|++||||+|||||+||+||++|++|| |+||+|++|||++||++|+|||+||+++|+++|.++|+
T Consensus 7 ~~~~K~~ii~~~~~~~~DTGS~EVQIA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d~~rY~~li~ 86 (93)
T 3ulw_A 7 DSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLIT 86 (93)
T ss_dssp CHHHHHHHHHHHCSSTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4567789999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 013758 424 KLGLRD 429 (437)
Q Consensus 424 kLGLR~ 429 (437)
+||||+
T Consensus 87 ~LgLr~ 92 (93)
T 3ulw_A 87 ELNLRD 92 (93)
T ss_dssp HTTC--
T ss_pred HhCCCC
Confidence 999985
No 6
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=1.7e-29 Score=210.46 Aligned_cols=73 Identities=37% Similarity=0.546 Sum_probs=70.8
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCC
Q 013758 358 KMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDN 430 (437)
Q Consensus 358 qrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kLGLR~~ 430 (437)
.+|++||||+|||||+||+||++|++|| |+||+|++|||++||++|+|||+||+++|+++|.++|++|||++.
T Consensus 13 ~r~~~DTGS~EVQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd~~rY~~li~~LgLr~~ 87 (90)
T 3bbn_O 13 EKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISKLNIREL 87 (90)
T ss_dssp SCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCSHHHHTTTTTTTCCC-
T ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCC
Confidence 6789999999999999999999999999 999999999999999999999999999999999999999999984
No 7
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.34 E-value=7.3e-13 Score=120.04 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=62.6
Q ss_pred HHhhcCcCCCCHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHH
Q 013758 331 VEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLK 408 (437)
Q Consensus 331 VKRifSLenaS~kEk~K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLK 408 (437)
|+-+.++.+++. -.++.+|+++.+-. ....-|+..||+||.+|++|| |+||+|++|||++||+||++||+
T Consensus 63 Vk~vt~~~~~~~----G~ki~~iLk~~gl~----p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~ 134 (158)
T 3j20_Q 63 VKLFKDPDNPNR----NLTITRILEKHGLA----PEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVK 134 (158)
T ss_dssp HHHHHCSSSTTS----CCCTHHHHHHHTCS----CSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccccccC----cCcHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 566667777773 22335677776543 336678999999999999999 99999999999999999999999
Q ss_pred HHHhcC
Q 013758 409 YLRRTD 414 (437)
Q Consensus 409 YLRrkD 414 (437)
||+++|
T Consensus 135 YLk~kd 140 (158)
T 3j20_Q 135 YYKRKG 140 (158)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 999998
No 8
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=96.69 E-value=0.0017 Score=58.75 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcC
Q 013758 372 AQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTD 414 (437)
Q Consensus 372 AiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD 414 (437)
-.|-.|..+|..|| |+||++++++|...-++.++|.+|.+++.
T Consensus 89 ~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~ 133 (151)
T 3u5c_N 89 YYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVA 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667788999999 99999999999999999999999999874
No 9
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=94.84 E-value=0.032 Score=50.61 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcC
Q 013758 373 QLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTD 414 (437)
Q Consensus 373 iLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD 414 (437)
.|-.|-.++..|| |+||++++++|...-++=++|.+|.+++.
T Consensus 92 ~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~ 135 (153)
T 2xzm_O 92 FLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQ 135 (153)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566788999 99999999999999999999999999874
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=67.65 E-value=2.9 Score=27.78 Aligned_cols=13 Identities=54% Similarity=0.823 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHH
Q 013758 259 LRELNERLMRLRV 271 (437)
Q Consensus 259 l~el~~rl~kl~~ 271 (437)
|++||+||+|||.
T Consensus 10 ledlqerlrklrk 22 (27)
T 3twe_A 10 LEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6889999999986
No 11
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=36.68 E-value=2.2e+02 Score=25.38 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHHHHHhhh-CCCCchhhhHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHhcCC
Q 013758 365 GSARVQIAQLTTKIKHLSSAL-HKKDKHSRKGLQAMVQRRKRLLKYLRRTDW---DSYCFVLSKLGL 427 (437)
Q Consensus 365 GS~EVQIAiLT~RI~~LteHL-nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~---erY~~lI~kLGL 427 (437)
.+..|.+.-|..|+.+|...- .+.+......+.+-...=+.++..|+..|. .+|..+|+.-|+
T Consensus 112 ~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~~n~~l~~~~~~~~~~~~~ 178 (179)
T 3nqw_A 112 SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQRGL 178 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Confidence 678999999999999997543 344445566666777777789999999986 667777776654
No 12
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=30.31 E-value=1.4e+02 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHHHhccCCCCCCChhHH-HHHHHHHHHHHHhhh
Q 013758 353 VREEFKMSESDCGSARVQ-IAQLTTKIKHLSSAL 385 (437)
Q Consensus 353 iI~kFqrhe~DTGS~EVQ-IAiLT~RI~~LteHL 385 (437)
.|..+-..+....|+.+| |-++|.||+.|...|
T Consensus 27 airqlcgaedssdssdmqeveiwtnrikeledwl 60 (67)
T 2nr5_A 27 AIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWL 60 (67)
T ss_dssp HHHHTTTTTCC----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 444444455556677776 779999999998765
Done!