RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013758
(437 letters)
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
[TaxId: 274]}
Length = 84
Score = 94.0 bits (234), Expect = 2e-24
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRK 404
K E KV +EF D GS VQ+A LT +I LS L HKKD HS +GL MV +R+
Sbjct: 2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 61
Query: 405 RLLKYLRRTDWDSYCFVLSKLGL 427
RLL+YL+R D + Y ++ KLG+
Sbjct: 62 RLLRYLQREDPERYRALIEKLGI 84
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 93.2 bits (232), Expect = 4e-24
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRK 404
AK+ EF +D GS VQ+A LT +I HL HKKD HSR+GL MV +R+
Sbjct: 4 TEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRR 63
Query: 405 RLLKYLRRTDWDSYCFVLSKLGLR 428
+LL YL+R D Y ++ +LGLR
Sbjct: 64 KLLDYLKRKDVARYTRLIERLGLR 87
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 89.4 bits (222), Expect = 9e-23
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLK 408
++ E+FK+ E+D GS VQIA LT +I +L+ L HKKD HSR+GL MV +R+RLL
Sbjct: 7 REIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLA 66
Query: 409 YLRRTDWDSYCFVLSKLGL 427
YLR D Y ++ KLGL
Sbjct: 67 YLRNKDVARYREIVEKLGL 85
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
(Peniophora sp. SG) [TaxId: 204723]}
Length = 198
Score = 29.2 bits (65), Expect = 0.64
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 207 LPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRE 261
+P F + E E M TD M ++G L P+ +E G L
Sbjct: 143 MPQPTFDFRFPAGRTSKEAEDMMTDMCVM--SAKIGGFLPGSLPQFMEPGLVLHL 195
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 26.4 bits (58), Expect = 2.6
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKK 247
+ +++ E ++++ M T + + L + KK
Sbjct: 56 KFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 95
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 26.5 bits (58), Expect = 2.9
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 46 SDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRN 85
S + +++ PP +++ ++ S K S + RRN
Sbjct: 74 SQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRN 113
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 27.4 bits (59), Expect = 3.7
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 342 SAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKH 391
+ ++ ++ +++E D G++ ++ + K K HKK+
Sbjct: 426 EGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKA-----HKKELE 470
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 25.1 bits (55), Expect = 6.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 330 LVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHL 381
L E Y DN K +++ + ++ + +Q+ L KI L
Sbjct: 42 LHEYYITNDNFD--TNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQL 91
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 25.3 bits (55), Expect = 6.8
Identities = 4/41 (9%), Positives = 14/41 (34%)
Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKL 248
V E + ++ +++ + + + L+ L
Sbjct: 57 RVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 97
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 25.2 bits (55), Expect = 6.8
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 343 AEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSS 383
E +++E+ K M + +Q+A + KI L++
Sbjct: 51 KESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNN 91
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 25.4 bits (55), Expect = 7.0
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKK 247
P ++ +K+ E V + + + E+ +KL++
Sbjct: 59 PYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQ 98
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 89
Score = 24.7 bits (53), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 215 EKKEEEKAVELERMKTDFVKMYSFE 239
E KE E+ ++RMKT+F+ S E
Sbjct: 6 ESKELERLKRIDRMKTEFIANISHE 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.126 0.343
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,494,211
Number of extensions: 68177
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 24
Length of query: 437
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,199,356
Effective search space: 418575244
Effective search space used: 418575244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.6 bits)