Query 013759
Match_columns 437
No_of_seqs 184 out of 804
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e20_C Eukaryotic peptide chai 100.0 5.6E-94 1.9E-98 734.9 21.6 423 9-436 15-440 (441)
2 1dt9_A ERF1, protein (eukaryot 100.0 3.9E-85 1.3E-89 674.0 29.1 429 5-435 6-434 (437)
3 3agk_A Peptide chain release f 100.0 2.4E-71 8.1E-76 561.1 32.1 361 8-419 9-371 (373)
4 3mca_B Protein DOM34, elongati 100.0 2.5E-70 8.6E-75 553.1 17.6 354 18-430 2-380 (390)
5 2vgn_A DOM34; translation term 100.0 2.9E-67 9.8E-72 530.9 24.7 342 30-429 14-385 (386)
6 3oby_A Protein pelota homolog; 100.0 1.5E-64 5.1E-69 503.1 19.3 323 29-424 10-346 (352)
7 3obw_A Protein pelota homolog; 100.0 4.1E-64 1.4E-68 502.5 17.3 324 29-419 28-364 (364)
8 3j15_A Protein pelota; ribosom 100.0 6.3E-65 2.2E-69 508.9 9.7 331 29-419 8-357 (357)
9 3agj_B Protein pelota homolog; 100.0 3.1E-63 1.1E-67 497.5 16.4 329 31-420 12-353 (358)
10 2qi2_A Pelota, cell division p 100.0 2E-59 6.7E-64 466.7 12.2 312 31-419 10-339 (347)
11 3ir9_A Peptide chain release f 100.0 9E-39 3.1E-43 285.5 19.2 162 257-419 2-165 (166)
12 1x52_A Pelota homolog, CGI-17; 100.0 3.7E-29 1.3E-33 212.6 5.6 113 273-425 10-122 (124)
13 3j21_Z 50S ribosomal protein L 93.7 0.61 2.1E-05 36.9 10.3 60 299-402 13-73 (99)
14 2lbw_A H/ACA ribonucleoprotein 92.5 0.8 2.7E-05 37.7 9.5 74 298-414 17-91 (121)
15 3on1_A BH2414 protein; structu 91.9 0.82 2.8E-05 36.3 8.6 60 299-402 16-75 (101)
16 3v7q_A Probable ribosomal prot 91.7 0.93 3.2E-05 36.0 8.8 73 298-414 16-88 (101)
17 3v7e_A Ribosome-associated pro 91.7 0.32 1.1E-05 37.2 5.7 60 299-402 9-68 (82)
18 3iz5_f 60S ribosomal protein L 91.6 1.3 4.4E-05 36.0 9.6 61 298-402 23-84 (112)
19 4a18_G RPL30; ribosome, eukary 91.1 0.69 2.4E-05 37.0 7.4 73 299-415 20-94 (104)
20 1xbi_A 50S ribosomal protein L 90.9 0.94 3.2E-05 37.2 8.2 84 289-416 18-102 (120)
21 2xzm_U Ribosomal protein L7AE 90.2 1.1 3.9E-05 37.1 8.2 61 299-402 22-82 (126)
22 2aif_A Ribosomal protein L7A; 90.0 1.4 4.9E-05 36.9 8.8 72 299-414 39-112 (135)
23 3o85_A Ribosomal protein L7AE; 89.8 0.66 2.2E-05 38.4 6.3 61 299-402 29-89 (122)
24 1w41_A 50S ribosomal protein L 89.7 1.4 4.8E-05 34.9 8.1 74 299-416 14-89 (101)
25 3u5e_c L32, RP73, YL38, 60S ri 89.7 1.2 4.2E-05 35.6 7.8 61 298-402 19-80 (105)
26 3cpq_A 50S ribosomal protein L 89.1 1.3 4.5E-05 35.7 7.6 74 299-416 19-94 (110)
27 2ale_A SNU13, NHP2/L7AE family 88.7 1.8 6.2E-05 36.3 8.4 61 299-402 30-90 (134)
28 1vq8_F 50S ribosomal protein L 86.7 2.4 8E-05 34.7 7.8 61 299-402 27-87 (120)
29 2fc3_A 50S ribosomal protein L 86.2 2.4 8.2E-05 34.9 7.7 74 300-416 27-101 (124)
30 1rlg_A 50S ribosomal protein L 85.6 2.5 8.6E-05 34.5 7.4 74 300-416 26-100 (119)
31 3vi6_A 60S ribosomal protein L 76.2 8.9 0.00031 31.5 7.6 29 299-327 25-53 (125)
32 2jnb_A NHP2-like protein 1; sp 75.0 1.6 5.4E-05 37.1 2.6 30 299-328 48-77 (144)
33 3u5c_M 40S ribosomal protein S 71.6 3.8 0.00013 34.7 4.2 59 300-401 39-99 (143)
34 3pwf_A Rubrerythrin; non heme 68.2 2 7E-05 37.5 1.9 25 333-366 138-162 (170)
35 3jyw_G 60S ribosomal protein L 68.1 9.6 0.00033 30.8 5.7 78 297-417 21-98 (113)
36 1gz0_A Hypothetical tRNA/RRNA 64.2 13 0.00044 34.4 6.7 72 300-417 12-87 (253)
37 3a43_A HYPD, hydrogenase nicke 61.9 11 0.00037 31.7 5.1 19 320-342 61-79 (139)
38 3nk6_A 23S rRNA methyltransfer 60.7 15 0.0005 34.6 6.4 69 301-417 35-106 (277)
39 2zkr_f 60S ribosomal protein L 60.3 7.7 0.00026 36.2 4.2 62 298-402 132-193 (266)
40 1ipa_A RRMH, RNA 2'-O-ribose m 59.1 13 0.00046 34.7 5.9 28 300-327 28-56 (274)
41 3izc_H 60S ribosomal protein R 52.3 30 0.001 32.0 6.7 60 300-402 130-189 (256)
42 1lko_A Rubrerythrin all-iron(I 52.3 26 0.00089 30.8 6.3 46 306-366 135-180 (191)
43 2kdx_A HYPA, hydrogenase/ureas 48.3 8.5 0.00029 31.2 2.2 25 334-366 74-99 (119)
44 2lcq_A Putative toxin VAPC6; P 46.6 7.4 0.00025 33.4 1.7 60 301-368 99-159 (165)
45 1yuz_A Nigerythrin; rubrythrin 44.0 12 0.00042 33.4 2.8 25 333-366 171-195 (202)
46 4a17_F RPL7A, 60S ribosomal pr 41.6 1.3E+02 0.0046 27.6 9.3 94 265-401 82-181 (255)
47 2kg4_A Growth arrest and DNA-d 38.9 53 0.0018 28.3 5.8 65 300-401 34-100 (165)
48 3irb_A Uncharacterized protein 38.4 23 0.00078 29.8 3.4 37 307-366 34-70 (145)
49 2gmg_A Hypothetical protein PF 35.7 36 0.0012 27.0 3.9 45 306-366 49-93 (105)
50 1gh9_A 8.3 kDa protein (gene M 35.6 15 0.00052 27.1 1.6 28 333-368 4-31 (71)
51 3iz5_H 60S ribosomal protein L 33.6 70 0.0024 29.5 6.0 60 299-401 125-184 (258)
52 6rxn_A Rubredoxin; electron tr 29.6 48 0.0016 22.1 3.2 29 334-366 5-39 (46)
53 2apo_B Ribosome biogenesis pro 29.0 32 0.0011 24.4 2.3 23 334-368 7-29 (60)
54 2kn9_A Rubredoxin; metalloprot 25.9 46 0.0016 25.1 2.8 30 333-366 27-69 (81)
55 3i2d_A E3 SUMO-protein ligase 25.3 43 0.0015 32.8 3.2 42 355-396 286-329 (371)
56 1s24_A Rubredoxin 2; electron 24.3 49 0.0017 25.3 2.8 12 355-366 66-77 (87)
57 3v2d_5 50S ribosomal protein L 23.4 44 0.0015 23.7 2.2 20 334-364 31-50 (60)
58 1l8d_A DNA double-strand break 23.4 33 0.0011 27.1 1.7 9 360-368 50-58 (112)
59 1dx8_A Rubredoxin; electron tr 22.3 63 0.0022 23.6 2.9 12 355-366 38-49 (70)
60 2l63_A GLP-2, glucagon-like pe 21.5 84 0.0029 19.4 2.9 26 2-27 2-30 (33)
61 1yk4_A Rubredoxin, RD; electro 21.5 70 0.0024 21.9 2.8 12 355-366 33-44 (52)
62 4ayb_P DNA-directed RNA polyme 20.5 39 0.0013 22.7 1.3 29 334-366 4-32 (48)
63 2zjr_Z 50S ribosomal protein L 20.3 56 0.0019 23.1 2.2 20 334-364 31-50 (60)
64 2v3b_B Rubredoxin 2, rubredoxi 20.3 70 0.0024 22.1 2.7 12 355-366 34-45 (55)
65 1twf_L ABC10-alpha, DNA-direct 20.2 55 0.0019 23.9 2.2 27 333-366 28-54 (70)
No 1
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-94 Score=734.95 Aligned_cols=423 Identities=62% Similarity=1.029 Sum_probs=243.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhhhhhhchhhhhhhhhcccchhHHHHHHHhhhccccC
Q 013759 9 KNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVP 88 (437)
Q Consensus 9 ~~~~~~~~~k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~~ 88 (437)
+++++|+|||+|++|.+++|+||++|||||||+++|+++.++|++|+++|+|||||+||++++++++++++||+++.++|
T Consensus 15 ~~~~~~~~k~~i~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~~v~~ai~s~~~rlkl~~~vp 94 (441)
T 3e20_C 15 KAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVP 94 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSSCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCSSCT
T ss_pred hHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhccchhhHHHHHHHHHhhhccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCeEEEE
Q 013759 89 PNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 168 (437)
Q Consensus 89 ~~Gl~~f~g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~ 168 (437)
++|+++|||.+..+++.+.+||++|+||+||++++|+||+.|+++||.++++++.++++|+||+++|.++++.|+.++++
T Consensus 95 ~~g~v~~~G~~~~e~~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~~~evl 174 (441)
T 3e20_C 95 DNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVL 174 (441)
T ss_dssp TSCCEEEEEEECCGGGCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-----------------------------
T ss_pred CCCEEEEeceeeccCCceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecCeEEEE
Confidence 99999999999877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhhh
Q 013759 169 HKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQ 248 (437)
Q Consensus 169 ~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l~ 248 (437)
++++.++|+||++||||+.||+|++++++++||++|++.+.++|.+ .+..++++||||||+++++.|.++++++++++
T Consensus 175 ~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~ 252 (441)
T 3e20_C 175 QRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFIT--DDKPNVAGIVLAGSADFKTELGQSDLFDQRLQ 252 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCcCEEEEECCHHHHHHHHHhcccCHHHH
Confidence 9999999999988999999999999999999999999999999863 11357999999999999999998878999999
Q ss_pred cceeEEEECCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCC
Q 013759 249 AKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLD 328 (437)
Q Consensus 249 ~~vi~~v~~s~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~ 328 (437)
+++++++++|+++++|++|++++++++|+++++++|.++|++|++++++++++||||+++|.+|+++|||+||||+|++.
T Consensus 253 ~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 253 SRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLD 332 (441)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred hheEEEEECCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccc
Confidence 99877899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEcCCCCcEEEEeeccchhcc---cCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhcc
Q 013759 329 ITRYVLKNTVTGEIVIKHLNREQETN---QNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCR 405 (437)
Q Consensus 329 ~~~~~~r~~~~~~~~~~~~~~~~~~~---r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~ 405 (437)
.+|+++||++|.. .+.++.|++..+ ++.+.||.||.+++++++.+++|+|++.|+++||+|+|||+.|++|+||++
T Consensus 333 ~~r~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~~ 411 (441)
T 3e20_C 333 MIRYEFKNSEGNP-VITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVK 411 (441)
T ss_dssp CEEC-----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHHH
T ss_pred cceeEEECCCCce-EEEecCccccccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHHH
Confidence 9999999998753 345666665322 445789999999999999999999999999999999999999999999889
Q ss_pred ccccEEEEeeeecCccCccCcCCCCCCCCCC
Q 013759 406 GFGGIGGILRYQLDMRSFDEFSDDGEIYDDS 436 (437)
Q Consensus 406 ~~gGIaAiLRy~~~~~~~~~~~~~~~~~~~~ 436 (437)
+|||||||||||+++++++++ ++|.|||.
T Consensus 412 ~fgGIaaiLRy~~~~~~~~~~--~~~~~~~~ 440 (441)
T 3e20_C 412 GFGGIGAVMRYQLDLSMLDPE--SDEFYSDS 440 (441)
T ss_dssp TSTTEEEECSSCCCCCSSCSS--CCC-----
T ss_pred cCCcEEEEEeccCChHHhccc--cccccccC
Confidence 999999999999998887763 36678875
No 2
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=3.9e-85 Score=674.04 Aligned_cols=429 Identities=74% Similarity=1.149 Sum_probs=373.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhhhhhhchhhhhhhhhcccchhHHHHHHHhhhc
Q 013759 5 QETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLY 84 (437)
Q Consensus 5 ~~~~~~~~~~~~~k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~ 84 (437)
++.++++++|+|||+|++|.+++|+||++||+||||++++..+.+.+..+|.+|+|||+|.+|++++.+++++..+++++
T Consensus 6 ~~~~~~~~~~~~k~~l~~L~~~~g~gt~~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~ 85 (437)
T 1dt9_A 6 SAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLY 85 (437)
T ss_dssp CTTTHHHHHHHHHHHHHHHHTCCCSSSCEEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCCeEEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccC
Confidence 34457899999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred cccCCCcEEEEeceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCe
Q 013759 85 NKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNT 164 (437)
Q Consensus 85 ~~~~~~Gl~~f~g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~ 164 (437)
.++|.+|+++|+|.+.+++|++++||++++||.|+..++|+||+.||++||.++++++.+|++|+||+++|.||++.+..
T Consensus 86 ~~~~~~Glvvf~g~~~~~~g~~~~~tl~~e~~~pi~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~~ 165 (437)
T 1dt9_A 86 NKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNT 165 (437)
T ss_dssp SSCCTTCEEEEEEEEECGGGCEEEEEEEECCSCCTTCCEEEEESSCCCHHHHHHCCCCCEEEEEECCSSCCCEEEEETTE
T ss_pred CCCCCCeEEEEeCccccCCCceEEEEEEecCCCCCceeEEEecChhhHHHHHHHhcCCCCEEEEEEeCCceEEEEEcCcE
Confidence 99999999999999877677788999999999999766666999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCC
Q 013759 165 REVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFD 244 (437)
Q Consensus 165 ~~~~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~ 244 (437)
++++.+++..+|+||++||||+.||+|++++++++||++|++++.+++.+ ..+.++++||||||+++++.|.++++++
T Consensus 166 ~~~~~~i~~~~P~K~~~Gg~s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~~~~lIlaGpg~~k~~f~~~~~l~ 243 (437)
T 1dt9_A 166 REVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIS--GDKVNVAGLVLAGSADFKTELSQSDMFD 243 (437)
T ss_dssp EEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSC--SSSCSSSCCEEEESTTTTHHHHSCSSSC
T ss_pred EEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccCCccEEEEECCHHHHHHHHHhhccC
Confidence 99888999999999998999999999999999999999999999999864 1234789999999999999999888999
Q ss_pred hhhhcceeEEEECCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEee
Q 013759 245 PRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVW 324 (437)
Q Consensus 245 ~~l~~~vi~~v~~s~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~ 324 (437)
++++++++.++++|+++++|++|++++++++|++++.++|+++|++|+++++++++++|||+++|++|+++|||+||||+
T Consensus 244 ~~L~~~vv~~v~~s~g~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~ 323 (437)
T 1dt9_A 244 QRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVY 323 (437)
T ss_dssp TTTTTTCCCEEECSSCTTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEE
T ss_pred hhhHhcEEEEEecCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEe
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhc
Q 013759 325 ENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFC 404 (437)
Q Consensus 325 d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L 404 (437)
|++..+|++++|++||.....++.|.++..|+.+.||.||++++.++..|++|+|++.|+++||+|+|||++|++|+|||
T Consensus 324 d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q~l 403 (437)
T 1dt9_A 324 ENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFV 403 (437)
T ss_dssp SCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHH
T ss_pred cCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHHHH
Confidence 99999998889998888766677776544478899999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEeeeecCccCccCcCCCCCCCCC
Q 013759 405 RGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 435 (437)
Q Consensus 405 ~~~gGIaAiLRy~~~~~~~~~~~~~~~~~~~ 435 (437)
++|||||||||||++++++++.++|++.|||
T Consensus 404 ~~~gGIaAiLRy~i~~~~~~~~~~~~~~~~~ 434 (437)
T 1dt9_A 404 KGFGGIGGILRYRVDFQGMEYQGGDDEFFDL 434 (437)
T ss_dssp HTTTTEEEECSSCCCCCCC------------
T ss_pred HhCCCEEEEEecccchhhhccccccccccCc
Confidence 9999999999999999888876656666765
No 3
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=2.4e-71 Score=561.06 Aligned_cols=361 Identities=29% Similarity=0.507 Sum_probs=320.8
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhhhhhhchhhhhhhhhcccchhHHHHHHHhhhcccc
Q 013759 8 DKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV 87 (437)
Q Consensus 8 ~~~~~~~~~~k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~ 87 (437)
+.+.++|+||++|++|.+.+|++|++||||+|+++++.++.|+|+++|.+|+|||+|.+|++++++++++.++|+++.++
T Consensus 9 ~~~~~~~~~k~~l~~L~~~~~~~t~~vSlyip~~~~~~~~~~~l~~e~~~a~nik~~~~r~~v~~al~~~~~~l~~~~~~ 88 (373)
T 3agk_A 9 RLTISKRELARLLKELKKWSAPATVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTST 88 (373)
T ss_dssp GGBCCHHHHHHHHHHHTTCCCSSSCEEEEEECTTSCHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred hhhhHHHHHHHHHHHHhhCcCCCCeEEEEEECCCCchHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCeEEE
Q 013759 88 PPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREV 167 (437)
Q Consensus 88 ~~~Gl~~f~g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~~~~ 167 (437)
|++|+++|||... |.+++||++++||.|+++++|.||+.||++||.++++.+.+|++|+||+++|.||++.+..+++
T Consensus 89 ~~~Gl~vf~~~~~---~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~~~~~ 165 (373)
T 3agk_A 89 PPNGLVLFCGEDM---STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEV 165 (373)
T ss_dssp CTTCEEEEEEC--------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSCEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCCEEEEEEecCC---CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCCCEEEEEEeCCcEEEEEEeCcEEEE
Confidence 9999999999652 4566799999999999999988999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCcceEEEecChhhHHHhcccccCChh
Q 013759 168 LHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATS-QPNVSGLVLAGSADFKTELSQSDMFDPR 246 (437)
Q Consensus 168 ~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~-~~~~~~liiaGp~~~k~~f~~~~~l~~~ 246 (437)
+.+++.++|+||++||||+.||+|++++.+++||++|++++.+++.. .+ ..++++||||||+++++.|.+.++++++
T Consensus 166 ~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~--~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~ 243 (373)
T 3agk_A 166 LKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVP--LAEKGVLKGVIVAGPGLAKQEFVEGNYLDYR 243 (373)
T ss_dssp EEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCEEEEEEEESTTHHHHHHHSSCSCHH
T ss_pred EEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccCcceEEEECChHHHHHhhhhhhcChH
Confidence 99999999999988999999999999999999999999999999830 00 0478999999999999999966689999
Q ss_pred hhccee-EEEECCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeec
Q 013759 247 LQAKIL-KVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWE 325 (437)
Q Consensus 247 l~~~vi-~~v~~s~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d 325 (437)
++++++ +++++|+++++|++|++++++++|++++.++|.++|++|+++++++++++|||+++|++|+++|||+||||+|
T Consensus 244 l~~~vi~~~v~~s~~~~~g~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d 323 (373)
T 3agk_A 244 LKKILAPELVDVAYQGLQGLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHE 323 (373)
T ss_dssp HHTTBCSSCEECCCCHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEET
T ss_pred hhhCceeEEEccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeC
Confidence 999987 7899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhcc
Q 013759 326 NLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCR 405 (437)
Q Consensus 326 ~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~ 405 (437)
+ . |++++|++.|.++||+|+|||++|++|+||++
T Consensus 324 ~-r---------------------------------------------d~~~~L~e~a~~~G~~V~ivs~~~~~g~ql~~ 357 (373)
T 3agk_A 324 S-R---------------------------------------------EDLEEWVEKAKSSGAQVIVVPESLAEAEWFLK 357 (373)
T ss_dssp T-C---------------------------------------------TTHHHHHHHHTTTTCEEEEECTTSTTHHHHHH
T ss_pred C-h---------------------------------------------hHHHHHHHHHHHcCCEEEEECCCCccHHHHHH
Confidence 6 1 12578999999999999999999999999559
Q ss_pred ccccEEEEeeeecC
Q 013759 406 GFGGIGGILRYQLD 419 (437)
Q Consensus 406 ~~gGIaAiLRy~~~ 419 (437)
+|||||||||||++
T Consensus 358 ~~gGIaAiLRy~~~ 371 (373)
T 3agk_A 358 TFGGLAGILRFRIS 371 (373)
T ss_dssp HHTTEEEEECC---
T ss_pred hCCcEEEEEeccCC
Confidence 99999999999987
No 4
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-70 Score=553.06 Aligned_cols=354 Identities=18% Similarity=0.271 Sum_probs=289.4
Q ss_pred HHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcccchhHHHHHHHhhhcccc------CCC
Q 013759 18 KLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV------PPN 90 (437)
Q Consensus 18 k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~------~~~ 90 (437)
|++++.... ++.|.|+|+|++.+|+|++||+|+. |.+.|.|+| |+++.+.+++..+.+.++++..+| |.+
T Consensus 2 kl~~~~~~~--~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~R-kv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~ 78 (390)
T 3mca_B 2 KLIQKNIEK--NGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVR-RVVKVGATGSTSGSRVVMKLRILVENMDFDTKA 78 (390)
T ss_dssp ------CBC--C-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCC-C--------------------EECCCEEECTTS
T ss_pred ccccccccC--CCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEE-EEEccCCCCCCceEEEEEEEEEEEEEEEecCCC
Confidence 555655555 6778999999999999999999999 999999999 898887777777788888888777 579
Q ss_pred cEEEEeceeecCCCc---eeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCC--CcEEEEEEeCCceEEEEEecCeE
Q 013759 91 GLVLYTGTIVTDDGK---EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESD--DKFGFIVMDGNGTLFGTLSGNTR 165 (437)
Q Consensus 91 Gl~~f~g~~~~~~~~---~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~--~~~~vvvvd~~~A~i~~~~g~~~ 165 (437)
|+++++|.+..++.+ |+|||++|+||+||+++|+ ||++|+++||++|+++. ..+++|+||++.|+||++.++.+
T Consensus 79 ~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~ 157 (390)
T 3mca_B 79 AQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKN-EWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMT 157 (390)
T ss_dssp SCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-C-CCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCE
T ss_pred CEEEEEEEEecCCccccccceEEEEEecCCcEEEEEc-CCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEE
Confidence 999999999876642 7889999999999999997 99999999999999985 56999999999999999999999
Q ss_pred EEEEEEEeecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCCh
Q 013759 166 EVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDP 245 (437)
Q Consensus 166 ~~~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~ 245 (437)
+++++++.++|+||+.||+ + +++++++||++|++++.+++++ .++++||||||||+|+.|.++ |+.
T Consensus 158 ~~~~~i~~~iPkK~~~gg~-~------~~~~~~~F~~~V~e~l~~~~d~-----~~v~~iIlaGPgf~K~~f~~~--L~~ 223 (390)
T 3mca_B 158 ILRQRIDQVIPRKRRGDSS-A------YQKGLDKFYDSVFQSINSEFDF-----DKLKVVILASPGFVARGLYDY--IFS 223 (390)
T ss_dssp EEEEEEECCCCCCBTTBCH-H------HHHHHHHHHHHHHHHHHHHCCT-----TTCSEEEEEESSSHHHHHHHH--HHH
T ss_pred EEEEEEEEeCCCcCCCCch-h------HHHHHHHHHHHHHHHHHHHhcc-----cCCcEEEEECChHHHHHHHHH--HHH
Confidence 9899999999999987764 4 7899999999999999999875 689999999999999999975 443
Q ss_pred h-----------hhcceeEEEECCCCCCccHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHH
Q 013759 246 R-----------LQAKILKVVDVSYGGENGFNQAIEL--SAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKA 312 (437)
Q Consensus 246 ~-----------l~~~vi~~v~~s~~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~A 312 (437)
+ ++.+++ ++++|+++++|++|++++ ++++|+++++++|.++|++|++++++++++||||+++|.+|
T Consensus 224 ~~~~~~~k~l~~~~~k~~-vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~A 302 (390)
T 3mca_B 224 MAVKLDLKQIVKSKNKFV-ILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKA 302 (390)
T ss_dssp HHHHTTCHHHHHHGGGEE-EEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHH
T ss_pred HHhhccchhhhhhcCeEE-EEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHH
Confidence 2 467885 899999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEE
Q 013759 313 LDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEF 392 (437)
Q Consensus 313 l~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~i 392 (437)
+++|||+||||+|++ +||++|. ++.+++ +|++.|+++||+|+|
T Consensus 303 le~GAVetLLI~d~l------~r~~d~~------------------------------~r~~~~-~L~e~~~~~Gg~V~i 345 (390)
T 3mca_B 303 FELGAIGELLISDSL------FRSSDIA------------------------------TRKKWV-SLVEGVKEINCPVYI 345 (390)
T ss_dssp HHTTCBSSCEEEETT------CCCSCHH------------------------------HHHHHH-HHHHHHHHTTCCEEE
T ss_pred HHcCCCeEEEEeccc------ccCCChh------------------------------HHHHHH-HHHHHHHhcCCEEEE
Confidence 999999999999999 7887321 123344 799999999999999
Q ss_pred ecCCCchhhhhccccccEEEEeeeecCccCccCcCCCC
Q 013759 393 VTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDG 430 (437)
Q Consensus 393 vs~~~e~G~q~L~~~gGIaAiLRy~~~~~~~~~~~~~~ 430 (437)
||++|++|+| |++|||||||||||++ +|+|++++.
T Consensus 346 vs~~~~~G~q-L~~lgGiaAiLRy~i~--~~~~~~~~~ 380 (390)
T 3mca_B 346 FSSLHESGKQ-LDLLSGIAAILTYPVD--EEDISEDEE 380 (390)
T ss_dssp ECTTSHHHHH-HHHTTSEEEEBSSCCC--CCCCCCCC-
T ss_pred ECCCCCchhh-hhcCCcEEEEEeccCC--ccchhhhcc
Confidence 9999999999 7999999999999999 777766654
No 5
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=2.9e-67 Score=530.95 Aligned_cols=342 Identities=17% Similarity=0.234 Sum_probs=287.4
Q ss_pred CcceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcccchhHHHHHHHhhhcccc------CCCcEEEEeceeecC
Q 013759 30 GTSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV------PPNGLVLYTGTIVTD 102 (437)
Q Consensus 30 ~~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~------~~~Gl~~f~g~~~~~ 102 (437)
+.|.|+|.|++.+|+|++||+|.. |.+.|.|+| |+++ +..++ .+.+++++++.+| |.+|.++++|.+..+
T Consensus 14 ~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~R-kv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~~~~lri~G~i~~~ 90 (386)
T 2vgn_A 14 GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKF-TSKL-DEAGK-KKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTD 90 (386)
T ss_dssp TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC----------------CCEEEEEEEEEEEEETTTTEEEEEEEECCC
T ss_pred CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEE-EEec-cCCCC-ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEcc
Confidence 568999999999999999999999 999999999 7877 66677 8888999996553 789999999999877
Q ss_pred CCc--------eeEEEEEeecCCCceeeeeeccCccchHHHHHhhcC--CCcEEEEEEeCCceEEEEEecCeEEEEEEEE
Q 013759 103 DGK--------EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLES--DDKFGFIVMDGNGTLFGTLSGNTREVLHKFS 172 (437)
Q Consensus 103 ~~~--------~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~--~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i~ 172 (437)
+++ ++|||++++||+||+++|| .|+.|+++||.+++++ +..+++|+||++.|.||++.++.++++++++
T Consensus 91 ~~~~~~~~vk~g~~hT~~iep~~~i~i~k~-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~ 169 (386)
T 2vgn_A 91 ESGASNVDIPVGKYLSFTLDYVYPFTIIKQ-NFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIE 169 (386)
T ss_dssp TTSSSSTTCCTTCEEEEECCSSSCEEEEES-CCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEECSSCEEEEEEEE
T ss_pred CCccccccccCccEEEEEEeCCCeEEEEEc-cCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEEECCEEEEEEEEE
Confidence 664 8999999999999999999 5999999999999985 6889999999999999999999999999999
Q ss_pred eecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhh-----
Q 013759 173 VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRL----- 247 (437)
Q Consensus 173 ~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l----- 247 (437)
.++|+||+.|++|+ +++++++||++|++++.++|++ .++++|||||||++++.|.+ ++++++
T Consensus 170 ~~iP~K~~~g~~s~------~~~~~~~F~~~V~~~l~~~~~~-----~~v~~lIlaGPg~~k~~f~~--~l~~~~~~~~~ 236 (386)
T 2vgn_A 170 YSMPKKKRTTDVLK------FDEKTEKFYKAIYSAMKKDLNF-----DKLKTIILCSPGFYAKILMD--KIFQYAEEEHN 236 (386)
T ss_dssp C---------CCSS------CCHHHHHHHHHHHHHHHHHCCT-----TTCSEEEEEESTTHHHHHHH--HHHHHHHHTTC
T ss_pred ecCCCCccCCCcch------HHHHHHHHHHHHHHHHHHHhcc-----cCCcEEEEECCHHHHHHHHH--HHHHHhhhhcc
Confidence 99999997643444 5678999999999999999864 68999999999999999996 555544
Q ss_pred ------hcceeEEEECCCCCCccHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCcc
Q 013759 248 ------QAKILKVVDVSYGGENGFNQAIEL--SAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVD 319 (437)
Q Consensus 248 ------~~~vi~~v~~s~~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~ 319 (437)
+++++ ++++|+++++|++|++++ ++++|+++++++|.++|++|+++++++++++|||+++|++|+++|||+
T Consensus 237 ~~~~~~~~ki~-vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVe 315 (386)
T 2vgn_A 237 KKILDNKGMFF-IAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAIS 315 (386)
T ss_dssp HHHHTTGGGEE-EEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEE
T ss_pred chhhhccCcEE-EEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcE
Confidence 47775 899999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCch
Q 013759 320 TLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQE 399 (437)
Q Consensus 320 tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~ 399 (437)
||||+|++ +||+ |.. ++.+ +++|++.|+++||+|+|||++|++
T Consensus 316 tLLV~d~l------~r~~-d~~-----------------------------~r~~-v~~L~e~v~~~Gg~V~ivs~~~e~ 358 (386)
T 2vgn_A 316 YLLLTDKV------LHSD-NIA-----------------------------QREE-YLKLMDSVESNGGKALVLSTLHSL 358 (386)
T ss_dssp EEEEETTG------GGSS-CHH-----------------------------HHHH-HHHHHHHHHHTTCEEEEECTTSHH
T ss_pred EEEEechh------hcCC-Cch-----------------------------hhhH-HHHHHHHHHHcCCEEEEECCCCcc
Confidence 99999999 5776 321 1233 889999999999999999999999
Q ss_pred hhhhccccccEEEEeeeecCccCccCcCCC
Q 013759 400 GSQFCRGFGGIGGILRYQLDMRSFDEFSDD 429 (437)
Q Consensus 400 G~q~L~~~gGIaAiLRy~~~~~~~~~~~~~ 429 (437)
|+| |++|||||||||||++ +++|++++
T Consensus 359 G~q-L~~lgGIAAiLRy~i~--~~~~~~~~ 385 (386)
T 2vgn_A 359 GEE-LDQLTGIACILKYPLP--DLDEDDGE 385 (386)
T ss_dssp HHH-HHHTTTEEEEESSCCC--CSSCC---
T ss_pred hhh-HhccCcEEEEEecCCC--cccccccc
Confidence 999 7999999999999999 77765554
No 6
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.5e-64 Score=503.12 Aligned_cols=323 Identities=18% Similarity=0.260 Sum_probs=269.9
Q ss_pred CCcceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcccchhHHHHHHHhhhcccc------CCCcEEEEeceeec
Q 013759 29 NGTSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV------PPNGLVLYTGTIVT 101 (437)
Q Consensus 29 ~~~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~------~~~Gl~~f~g~~~~ 101 (437)
++.|.|+|.|++.+|+|++||+|.. |.+.|.| | |+++.+.++..++.+.++++..+| |.+|.++++|.+..
T Consensus 10 ~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-R-kv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~Lri~G~i~~ 87 (352)
T 3oby_A 10 DNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-K-RASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFANRLRVSGKIVA 87 (352)
T ss_dssp TTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C----------------CCCCEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-E-EEeccCCCCCcceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEe
Confidence 5788999999999999999999999 9999999 8 888776555444455566676665 56899999999998
Q ss_pred CCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhc--CCCcEEEEEEeCCceEEEEEecCeEEEEEEEEeecCccc
Q 013759 102 DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLE--SDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKH 179 (437)
Q Consensus 102 ~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~--~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i~~~vp~K~ 179 (437)
++++++|||++++||+||+++| ||+.|+++||++|++ .++.+++|+||+++|.||++.+++++++++++.++|+|+
T Consensus 88 ~~~~G~~hT~~iep~~~i~i~k--~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~ 165 (352)
T 3oby_A 88 GIEESGYHTLNITVGKELSIIK--KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGM 165 (352)
T ss_dssp C----CEEEEEECTTCCEEEEE--ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC------
T ss_pred cCCCCeEEEEEEeCCCeEEEEE--cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEeccCCCcc
Confidence 8877999999999999999998 899999999999999 678999999999999999999999999999999999985
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCCh---hhhcceeEEEE
Q 013759 180 GRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDP---RLQAKILKVVD 256 (437)
Q Consensus 180 ~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~---~l~~~vi~~v~ 256 (437)
|++ | ++||++|++++.++ ++++||||||||+|++|.+ ++++ +++++++ +++
T Consensus 166 ---g~~--r---------~~F~~~V~e~~~~~---------~v~~iIlaGPg~~K~~f~~--~l~~~~~~l~~kvv-~v~ 219 (352)
T 3oby_A 166 ---GDS--R---------KEFFGEVAAKLESF---------DFKYLIVAGPGFAKNDFLD--FLKERYPEMAKNAV-VVD 219 (352)
T ss_dssp -----C--C---------CCHHHHHHHHHHHH---------CCSEEEEECSTTHHHHHHH--HHHHHCHHHHTTEE-ECC
T ss_pred ---chh--H---------HHHHHHHHHHHHhc---------CCCEEEEECCHHHHHHHHH--HHHHHHHHhhCcEE-EEE
Confidence 222 1 68999999999987 3899999999999999997 4554 7889998 999
Q ss_pred CCCCCCccHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEE
Q 013759 257 VSYGGENGFNQAIELS--AESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVL 334 (437)
Q Consensus 257 ~s~~~~~gl~Evl~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~ 334 (437)
+|+++++|++|++++. +++|+++++++|+++|++|+++++++ +++|||+++|.+|+++|||+||||+|++ +
T Consensus 220 ~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l------~ 292 (352)
T 3oby_A 220 VSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEF------L 292 (352)
T ss_dssp CCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHH------H
T ss_pred CCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccc------h
Confidence 9999999999999995 89999999999999999999999998 9999999999999999999999999999 3
Q ss_pred EcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEe
Q 013759 335 KNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 335 r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiL 414 (437)
++. |+ .+.+++|++.|+++||+|+|||++|++|+| |++||||||||
T Consensus 293 r~~-----------------r~----------------~~~~~~l~e~~~~~G~~v~i~S~~~e~G~q-L~~lGGIaAiL 338 (352)
T 3oby_A 293 LEE-----------------RE----------------KWDVDGLLREVEESGGKVVIMSTEFEPGKR-LMSLGGIAALL 338 (352)
T ss_dssp HHH-----------------TT----------------TSCHHHHHHHHHHTTCEEEEECTTSHHHHH-HHHTTSEEEEE
T ss_pred hcc-----------------cc----------------hHHHHHHHHHHHHcCCEEEEEcCCCcchhH-HhcCCCEEEEE
Confidence 432 10 234778999999999999999999999999 69999999999
Q ss_pred eeecCccCcc
Q 013759 415 RYQLDMRSFD 424 (437)
Q Consensus 415 Ry~~~~~~~~ 424 (437)
|||++ +|+
T Consensus 339 Ry~~~--~~~ 346 (352)
T 3oby_A 339 RFNVK--GLE 346 (352)
T ss_dssp SSCCC--C--
T ss_pred ecCCc--ccc
Confidence 99999 554
No 7
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.1e-64 Score=502.50 Aligned_cols=324 Identities=18% Similarity=0.205 Sum_probs=274.7
Q ss_pred CCcceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcccchhHHHHHHHhhhcccc------CCCcEEEEeceeec
Q 013759 29 NGTSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV------PPNGLVLYTGTIVT 101 (437)
Q Consensus 29 ~~~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~------~~~Gl~~f~g~~~~ 101 (437)
.+.|.|+|.|++.+|+|++||+|+. |.+.|.|+| |+++.+ ++.+.++++..+| |.+|.++++|.+..
T Consensus 28 ~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~R-kv~~~~-----~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~iv~ 101 (364)
T 3obw_A 28 EKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTR-DVGLGK-----ESRRIPMTIILKVDYTEFQEFTNRLRIHGIIED 101 (364)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEE-ECC--------CCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEE-EEEcCC-----ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEe
Confidence 5678999999999999999999999 999999999 676432 2234445566555 56999999999987
Q ss_pred CC---C-ceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCeEEEEEEEEeecCc
Q 013759 102 DD---G-KEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPK 177 (437)
Q Consensus 102 ~~---~-~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i~~~vp~ 177 (437)
++ + .++|||++++|++||+++|| .|+.|+++||+++++....+++|+||+++|.||++.+++++++++++.++|+
T Consensus 102 ~~~~~v~~G~~HT~~ie~~~~i~i~K~-~w~~~~le~L~e~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~iPk 180 (364)
T 3obw_A 102 APERFGIKGAHHTINLDIGDEIIIIKQ-QWNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLN 180 (364)
T ss_dssp CCGGGCCTTCEEEEEECTTCEEEEECS-CC--------------CCCEEEEEEETTEEEEEEECSSCEECCCEEECGGGC
T ss_pred ccccccccceEEEEEEcCCCeEEEEEc-cCCHHHHHHHHHHhCcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEeeCcc
Confidence 65 2 27889999999999999998 5999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhhhcceeEEEEC
Q 013759 178 KHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDV 257 (437)
Q Consensus 178 K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l~~~vi~~v~~ 257 (437)
|+. +++++||++|++.+.+++++ .++++|||||||++|++|.+ +|+++++++++.++++
T Consensus 181 K~~--------------~~~~~f~~~V~e~~~~~~~~-----~~v~~iIlaGPg~~K~~f~~--~l~~~~~~~~i~~vd~ 239 (364)
T 3obw_A 181 EEE--------------GIIEQNALEIATELAEYVKQ-----YDPDAILLAGPGFFKEEVSK--KVNAILKNKKIYIDSV 239 (364)
T ss_dssp SST--------------THHHHHHHHHHHHHHHHHHH-----HCCSEEEEECSSSHHHHHHH--HHHTTTCCSEEEEECC
T ss_pred chh--------------HHHHHHHHHHHHHHHHHhcc-----ccCCEEEEECChHHHHHHHH--HHHHHhhcCeEEEEeC
Confidence 863 35679999999999999864 68999999999999999997 5677777777779999
Q ss_pred CCCCCccHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEE
Q 013759 258 SYGGENGFNQAIEL--SAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLK 335 (437)
Q Consensus 258 s~~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r 335 (437)
|+++++|++|++++ ++++|+++++++|+++|++|+++++++++++|||+++|.+|+++|||+||||+|++. +
T Consensus 240 s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~------r 313 (364)
T 3obw_A 240 SSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLL------S 313 (364)
T ss_dssp SCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGG------S
T ss_pred CCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCc------c
Confidence 99999999999997 789999999999999999999999999999999999999999999999999999993 3
Q ss_pred cCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEee
Q 013759 336 NTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILR 415 (437)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiLR 415 (437)
+. + + ..+.+++|++.|+++||+|+|||++|++|+| |++|||||||||
T Consensus 314 ~~-d------------------------------~-~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~q-L~~lGGIAAiLR 360 (364)
T 3obw_A 314 SD-E------------------------------Q-ERLTIERMLEDIENKRGEVILVPKESPIYFE-LKNLTGILAILR 360 (364)
T ss_dssp SC-H------------------------------H-HHHHHHHHHHHHHTTTCEEEEECTTSTTHHH-HHHTTTEEEEES
T ss_pred cc-c------------------------------c-hHHHHHHHHHHHHhcCCEEEEECCCCCCchh-hhcCCcEEEEEe
Confidence 32 0 0 3567899999999999999999999999999 799999999999
Q ss_pred eecC
Q 013759 416 YQLD 419 (437)
Q Consensus 416 y~~~ 419 (437)
||+|
T Consensus 361 y~i~ 364 (364)
T 3obw_A 361 FRIN 364 (364)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 9986
No 8
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.3e-65 Score=508.88 Aligned_cols=331 Identities=18% Similarity=0.259 Sum_probs=296.3
Q ss_pred CCcceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcccc-hhHHHHHHHhhhcccc------CCCcEEEEeceee
Q 013759 29 NGTSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQSVL-GAITSAQQRLKLYNKV------PPNGLVLYTGTIV 100 (437)
Q Consensus 29 ~~~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~~~-~~~~~~~~~l~l~~~~------~~~Gl~~f~g~~~ 100 (437)
++.|.|+|.|++.+|+|++||+|.. |.+.|.|+| |+++.+.+ ++....+.++++..+| +..+.++++|.+.
T Consensus 8 ~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~R-kv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~Lri~G~i~ 86 (357)
T 3j15_A 8 PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLR-KQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFANQVRVTGPIV 86 (357)
T ss_dssp TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCC-CCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTTEEEECCBEE
T ss_pred CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEE-EEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCCEEEEEEEEE
Confidence 5778999999999999999999999 999999999 88876543 2333445667777766 3588999999998
Q ss_pred cCC-C---ceeEEEEEeecCCCceeeeeeccCccchHHHHHhhc--CCCcEEEEEEeCCceEEEEEecCeEEEEEEEEee
Q 013759 101 TDD-G---KEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLE--SDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVD 174 (437)
Q Consensus 101 ~~~-~---~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~--~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i~~~ 174 (437)
.++ . .++|||++++||+||+++|| .|+.|+++||++|++ .++.+++|+||+++|.||++.++.++++++++.+
T Consensus 87 ~~~~~~v~~G~~hT~~ie~~~~i~i~k~-~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~~~~~i~~~ 165 (357)
T 3j15_A 87 YASREDVPLGKYHTIAIEQGTVVTIQKP-RWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVEILNSIRHN 165 (357)
T ss_dssp ECCCSSCCCSSBCCEEECSSCCEEECTT-CCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEEEEECCCCC
T ss_pred eccccccccccEEEEEecCCCeEEEEEe-cCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEEec
Confidence 876 3 28889999999999999998 599999999999999 5789999999999999999999999999999999
Q ss_pred cCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCCh---hhhcce
Q 013759 175 LPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDP---RLQAKI 251 (437)
Q Consensus 175 vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~---~l~~~v 251 (437)
+|+||+ ++. +++++++||++|++++.++|++ .++++|||||||++++.|.+ +|++ ++++++
T Consensus 166 ipkK~~---~~~------~e~~~~~f~~~Vae~~~~~~~~-----~~v~~iilaGPg~~k~~f~~--~l~~~~~~l~~kv 229 (357)
T 3j15_A 166 LGGKRY---NTD------RESEEMKFFHDVAKTMEEVMKR-----ENVEKAIVAGPGFVKEDFYK--FLKEKYPELAKKV 229 (357)
T ss_dssp SCSSSS---SCC------CCHHHHHHHHHHHHHHHHHHHH-----HTCCCCEECCSTTHHHHHHH--HHHHHSCCSSCEE
T ss_pred CCCCcc---cch------HHHHHHHHHHHHHHHHHHHhcc-----cCCCEEEEECChHHHHHHHH--HHHHhhHHhhCeE
Confidence 999975 343 6788999999999999999975 68999999999999999997 5665 678898
Q ss_pred eEEEECCCCCCccHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCc
Q 013759 252 LKVVDVSYGGENGFNQAIEL--SAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDI 329 (437)
Q Consensus 252 i~~v~~s~~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~ 329 (437)
+ ++++|+++++|++|++++ ++++|+++++++|.++|++|++++++++|++|||+++|.+|+++|||+||||+|++.
T Consensus 230 v-~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~- 307 (357)
T 3j15_A 230 V-IEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELL- 307 (357)
T ss_dssp C-CCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHH-
T ss_pred E-EEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccc-
Confidence 8 899999999999999998 589999999999999999999999999999999999999999999999999999983
Q ss_pred eeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhcccccc
Q 013759 330 TRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGG 409 (437)
Q Consensus 330 ~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gG 409 (437)
+++ ..+.+++|++.|+++||+|+|||++|++|+| |++|||
T Consensus 308 -----r~~----------------------------------~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~q-L~~lgG 347 (357)
T 3j15_A 308 -----KGE----------------------------------LREKVEELMDAVRYSRGEVVVVSSEHEGGEK-LKALGG 347 (357)
T ss_dssp -----TSS----------------------------------CCHHHHHHHHHHHHTTCEEEEECSSSTTHHH-HHHHCS
T ss_pred -----ccc----------------------------------chHHHHHHHHHHHHcCCEEEEECCCCCcchh-hhcCCc
Confidence 311 1356889999999999999999999999999 799999
Q ss_pred EEEEeeeecC
Q 013759 410 IGGILRYQLD 419 (437)
Q Consensus 410 IaAiLRy~~~ 419 (437)
||||||||+|
T Consensus 348 iaAiLRy~ip 357 (357)
T 3j15_A 348 LAALLRFRVK 357 (357)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEeccCC
Confidence 9999999986
No 9
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=3.1e-63 Score=497.53 Aligned_cols=329 Identities=16% Similarity=0.242 Sum_probs=293.1
Q ss_pred cceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcccchhHHHHHHHhhhcccc------CCCcEEEEeceeecCC
Q 013759 31 TSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV------PPNGLVLYTGTIVTDD 103 (437)
Q Consensus 31 ~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~------~~~Gl~~f~g~~~~~~ 103 (437)
.|.|+|.|++.+|+|++||+|+. |.+.|.|+| |+++ ++..+.+.++++..++ +..+.++++|.+..++
T Consensus 12 ~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R-~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~Lri~G~i~~~~ 86 (358)
T 3agj_B 12 RRIVRLRPESEEDLWLLRITLRPGDVVRKRTSR-DVPV----GSGRKERVVMTLRIRLDSIEFQPFTGKLRISGIVVEGP 86 (358)
T ss_dssp SCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEE-EECC----SSSCCEEEEEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEE-EEec----CCCccEEEEEEEEEEEEEEEcCCCCCEEEEEEEEccCC
Confidence 67999999999999999999999 999999999 6665 3323344556666664 4456677799998777
Q ss_pred C---c-eeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCeEEEEEEEEeecCccc
Q 013759 104 G---K-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKH 179 (437)
Q Consensus 104 ~---~-~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i~~~vp~K~ 179 (437)
+ . ++|||++++||+||+++||.||+.||++||.++ ..+..+++|+||+++|.||++.++.++++.+++.++|+||
T Consensus 87 ~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~-~~~~~~~~vvvd~~~A~i~~l~~~~~~~~~~i~~~vpkK~ 165 (358)
T 3agj_B 87 DEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG-RARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLPGKD 165 (358)
T ss_dssp GGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC-CCCCEEEEEEECSSEEEEEEEESSCEEEEEEEECCCCCTT
T ss_pred CcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh-CcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCC
Confidence 4 3 889999999999999999856999999999999 8889999999999999999999999999999999999997
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhhhcceeEEEECCC
Q 013759 180 GRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSY 259 (437)
Q Consensus 180 ~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l~~~vi~~v~~s~ 259 (437)
|| + +++++++||++|++++.++|++ .++++||||||+++++.|.+ +|+++++++++.++++|+
T Consensus 166 --g~--q------~e~~~~~f~~~Va~~l~~~~~~-----~~~~~lIlAGpg~~k~~f~~--~L~~~~~~~~i~~v~~s~ 228 (358)
T 3agj_B 166 --DP--S------REQEVEKYVDRAAKRIVEEAAR-----HRSPIAVIAGPGQLKTSVAE--KVQRAMPSLKVATVDTSM 228 (358)
T ss_dssp --ST--T------HHHHHHHHHHHHHHHHHHHHHH-----HTCSEEEEEESSSHHHHHHH--HHHHHSTTSEEEEEECSC
T ss_pred --ch--H------HHHHHHHHHHHHHHHHHHHhcc-----cCCcEEEEECCHHHHHHHHH--HHHHHhhhceEEEEEcCC
Confidence 43 3 6889999999999999999864 57999999999999999985 788888888777999999
Q ss_pred CCCccHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcC
Q 013759 260 GGENGFNQAIEL--SAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNT 337 (437)
Q Consensus 260 ~~~~gl~Evl~~--~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~ 337 (437)
++++|++|++++ ++++|++++.++|.++|++|+++++++++++|||+++|.+|+++|||+||||+|++ ++|+
T Consensus 229 g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l------~r~~ 302 (358)
T 3agj_B 229 GGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTL------LHSP 302 (358)
T ss_dssp CHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHH------HTCS
T ss_pred CCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEeccc------ccCC
Confidence 999999999988 58999999999999999999999999999999999999999999999999999999 4665
Q ss_pred CCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEeeee
Q 013759 338 VTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQ 417 (437)
Q Consensus 338 ~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiLRy~ 417 (437)
+. +..+.+++|++.|+++||+|+|||++|++|+| |++|||||||||||
T Consensus 303 -d~------------------------------~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~q-L~~~gGIaAiLRy~ 350 (358)
T 3agj_B 303 -DD------------------------------AVREAVDEALRLVESMGGRVIIIPGDSPAGER-LVSFGGVIALLRYP 350 (358)
T ss_dssp -SH------------------------------HHHHHHHHHHHHHHHTTCEEEEECSSSHHHHH-HGGGTTEEEEESSC
T ss_pred -Ch------------------------------hhHHHHHHHHHHHHHcCCEEEEECCCCcchhh-hhcCCcEEEEEecc
Confidence 11 12456889999999999999999999999999 89999999999999
Q ss_pred cCc
Q 013759 418 LDM 420 (437)
Q Consensus 418 ~~~ 420 (437)
++.
T Consensus 351 i~~ 353 (358)
T 3agj_B 351 VPQ 353 (358)
T ss_dssp CCG
T ss_pred Cch
Confidence 984
No 10
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=2e-59 Score=466.71 Aligned_cols=312 Identities=18% Similarity=0.255 Sum_probs=256.4
Q ss_pred cceEEEEcCCCCCHHHHHhhhhh-hhhhchhhhhhhhhcc-cchhHHHHHHHhhhccccC------------CCcEEEEe
Q 013759 31 TSMISLIMPPRDQVSRVTKMLGD-EFGTASNIKSRVNRQS-VLGAITSAQQRLKLYNKVP------------PNGLVLYT 96 (437)
Q Consensus 31 ~~~vsly~~~~~d~~~v~nll~~-d~~~a~~ir~k~~r~~-~~~~~~~~~~~l~l~~~~~------------~~Gl~~f~ 96 (437)
.|.|+|.|++.+|+|++||+|+. |.+.|.|+| |+++.+ .+++..+.+.++++..+|. .+|+++|+
T Consensus 10 ~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~R-kv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~~Lri~G~vv~~ 88 (347)
T 2qi2_A 10 NSTYRIRIESLDDLWYLRNILSEGDEVSAITFR-RVEESADVQRSRERERIPITIRLKVEKIEFQDFDNRLRILGTVIEG 88 (347)
T ss_dssp TTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC--------------CCEEEEEEEEEEECCTTCSCEEEEEEECC-----
T ss_pred CcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEE-EEecccccCCCCccEEEEEEEEEEEEEEEccCCCCEEecceEEEEc
Confidence 67999999999999999999999 999999999 777643 3343344455566666642 25555555
Q ss_pred ceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcC--CCcEEEEEEeCCceEEEEEecCeEEEEEEEEee
Q 013759 97 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLES--DDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVD 174 (437)
Q Consensus 97 g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~--~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i~~~ 174 (437)
+. .+.+++||++++||+||+++| ||++|+++||.+++++ .+.+++|+||+++|.||++.+++++++++++.+
T Consensus 89 ~~----~~~g~~htl~ie~~~~i~i~k--~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~ 162 (347)
T 2qi2_A 89 PE----DTKGKHQSITVTVDSEISITK--EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSG 162 (347)
T ss_dssp --------CCSEEEEEECTTCEEEEES--CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEEEEEEECC
T ss_pred CC----CCCccEEEEEEcCCCeEEEEE--cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEEEEEEeec
Confidence 53 234788999999999999966 9999999999999996 788999999999999999999999999999999
Q ss_pred cCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhhhcceeEE
Q 013759 175 LPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKV 254 (437)
Q Consensus 175 vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l~~~vi~~ 254 (437)
+|+|++ +|+ |.| ++||++|++++.++ + ++|||||||++|+.|.+ +++++++++++ +
T Consensus 163 ~~Kk~~---~s~--f~r------~~F~~~V~~~~~~~---------d-~~lIlaGPg~~k~~f~~--~l~~~~~~~i~-~ 218 (347)
T 2qi2_A 163 RSGKYA---EGN--YSE------ASYFDQIVNALKNY---------S-NSIIILGPGFARDRFAR--YCAQRGVNVIG-S 218 (347)
T ss_dssp HHHHC---------CCH------HHHHHHHHHHHHTC---------C-SCEEEEESSSHHHHHHH--HHHHTSCCCSC-C
T ss_pred CCCccc---cch--hhH------HHHHHHHHHHHHhc---------C-CeEEEECCHHHHHHHHH--HHHHhhcceEE-E
Confidence 777754 342 543 59999999999874 3 89999999999999975 66777766665 8
Q ss_pred EECCCCCCccHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeE
Q 013759 255 VDVSYGGENGFNQAIELS--AESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRY 332 (437)
Q Consensus 255 v~~s~~~~~gl~Evl~~~--~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~ 332 (437)
+++|+++++|++|++++. +++|+++++++|.++|++|+++++++ ++|||+++|++|+++|||+||||+|++.
T Consensus 219 v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~---- 292 (347)
T 2qi2_A 219 FPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMF---- 292 (347)
T ss_dssp EECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHH----
T ss_pred EecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEecccc----
Confidence 999999999999999996 99999999999999999999999987 9999999999999999999999999983
Q ss_pred EEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEEE
Q 013759 333 VLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGG 412 (437)
Q Consensus 333 ~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaA 412 (437)
+ +.+ +++|++.|+++||+|+|||++|++|+| |++||||||
T Consensus 293 --r------------------------------------r~~-~~~L~e~~~~~G~~V~ivs~~~e~G~q-L~~lGGIAa 332 (347)
T 2qi2_A 293 --R------------------------------------TED-GRRSLSIAQTVGTRIHIVSVSNDPGQI-VKKFGGFAG 332 (347)
T ss_dssp --T------------------------------------SHH-HHHHHHHHHHHTCEEEEECTTSHHHHH-HHHTTSEEE
T ss_pred --c------------------------------------chh-HHHHHHHHHHcCCEEEEECCCCcchHH-HHhcCCEEE
Confidence 2 022 678999999999999999999999999 699999999
Q ss_pred EeeeecC
Q 013759 413 ILRYQLD 419 (437)
Q Consensus 413 iLRy~~~ 419 (437)
|||||++
T Consensus 333 iLRy~~~ 339 (347)
T 2qi2_A 333 ILRYRVQ 339 (347)
T ss_dssp EECSCC-
T ss_pred EEeccch
Confidence 9999998
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=100.00 E-value=9e-39 Score=285.52 Aligned_cols=162 Identities=25% Similarity=0.436 Sum_probs=147.4
Q ss_pred CCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEc
Q 013759 257 VSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKN 336 (437)
Q Consensus 257 ~s~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~ 336 (437)
-||++++|++|++++++++|+++++++|+++|++||++++++++++|||+++|++|+++|||+||||+|++...|++++|
T Consensus 2 ~sy~ge~Gl~E~i~~~~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c 81 (166)
T 3ir9_A 2 NAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKC 81 (166)
T ss_dssp -CCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEEC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEe--eccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEe
Q 013759 337 TVTGEIVIKH--LNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 337 ~~~~~~~~~~--~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiL 414 (437)
++|+...+.+ ..|.+ ..+....||.||.+++++++.+++++|++.|+++||+|+|||++|++|+||+++||||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~c~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGGIaaiL 160 (166)
T 3ir9_A 82 SVCGYENKWTRRWKPGE-PAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAIL 160 (166)
T ss_dssp SSSSCEEEEEECCCC---CCCCCCBCTTTCCBEEEEEEEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTTEEEEE
T ss_pred CCCCceeEEEeecChhh-cccccccccccCccchhhhHHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCCEEEEE
Confidence 9999654333 44443 12345689999999999999999999999999999999999999999999669999999999
Q ss_pred eeecC
Q 013759 415 RYQLD 419 (437)
Q Consensus 415 Ry~~~ 419 (437)
|||++
T Consensus 161 Ry~i~ 165 (166)
T 3ir9_A 161 RYNTG 165 (166)
T ss_dssp SSCCC
T ss_pred eccCC
Confidence 99986
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.95 E-value=3.7e-29 Score=212.60 Aligned_cols=113 Identities=19% Similarity=0.356 Sum_probs=101.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchh
Q 013759 273 AESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQE 352 (437)
Q Consensus 273 ~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~ 352 (437)
+++|+++++++|+++|++|+++++++++++|||+++|.+|+++|||+||||+|++ +||+ |..
T Consensus 10 ~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l------~r~~-d~~----------- 71 (124)
T 1x52_A 10 ASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDEL------FRHQ-DVA----------- 71 (124)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHH------HTCS-SHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhh------hcCC-ChH-----------
Confidence 4578899999999999999999999999999999999999999999999999999 6776 321
Q ss_pred cccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEeeeecCccCccC
Q 013759 353 TNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDE 425 (437)
Q Consensus 353 ~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiLRy~~~~~~~~~ 425 (437)
++.++++ |++.|+++||+|+|||++|++|+| |++|||||||||||++ ++++
T Consensus 72 ------------------~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~q-L~~~gGIaAiLRy~i~--~~~~ 122 (124)
T 1x52_A 72 ------------------TRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQ-LSQLTGVAAILRFPVP--SGPS 122 (124)
T ss_dssp ------------------HHHHHHH-HHHHHHHTTCEEEEECSSSHHHHH-HHTTTTEEEEESSCCT--TCSC
T ss_pred ------------------HHHHHHH-HHHHHHHcCCEEEEECCCCccHHH-HhcCCCEEEEEecCCc--cccc
Confidence 2456788 999999999999999999999999 6999999999999998 4543
No 13
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.72 E-value=0.61 Score=36.92 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|+.+.|.++|.+|++.|.+..+++..|.. ++....
T Consensus 13 agk~v~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 48 (99)
T 3j21_Z 13 TGKVVLGSNETIRLAKTGGAKLIIVAKNAP--------------------------------------------KEIKDD 48 (99)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEECCCC--------------------------------------------HHHHHH
T ss_pred hCCEeECHHHHHHHHHcCCccEEEEeCCCC--------------------------------------------HHHHHH
Confidence 489999999999999999999999987741 123445
Q ss_pred HHHHHHhcCCEEEEe-cCCCchhhh
Q 013759 379 FANEYRRFGCTLEFV-TNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~iv-s~~~e~G~q 402 (437)
+...+...+..++++ .+..+-|.-
T Consensus 49 i~~~c~~~~ip~~~~~~s~~eLG~a 73 (99)
T 3j21_Z 49 IYYYAKLSDIPVYEFEGTSVELGTL 73 (99)
T ss_dssp HHHHHHHTTCCEEEECCCSCGGGGT
T ss_pred HHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 778888999998766 787777765
No 14
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=92.46 E-value=0.8 Score=37.73 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 298 DTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 298 ~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
..+..+.|.++|.+|++.|.+..++|+.|.. + .+++.
T Consensus 17 k~gkl~~G~~~v~kai~~gkakLViiA~D~~--------~-----------------------------------~~~~~ 53 (121)
T 2lbw_A 17 KAKNVKRGVKEVVKALRKGEKGLVVIAGDIW--------P-----------------------------------ADVIS 53 (121)
T ss_dssp TTTCEEESHHHHHHHHHHSCCCEEEECTTCS--------C-----------------------------------TTHHH
T ss_pred HcCCccccHHHHHHHHHcCCceEEEEeCCCC--------H-----------------------------------HHHHH
Confidence 3589999999999999999999999988762 1 12344
Q ss_pred HHHHHHHhcCCEEEEecCCCchhhhhcccc-ccEEEEe
Q 013759 378 WFANEYRRFGCTLEFVTNKSQEGSQFCRGF-GGIGGIL 414 (437)
Q Consensus 378 ~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~-gGIaAiL 414 (437)
.+...+...|.-+.++++..+.|.-.-... -.++||+
T Consensus 54 ~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~ 91 (121)
T 2lbw_A 54 HIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIV 91 (121)
T ss_dssp HHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEEC
T ss_pred HHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEE
Confidence 577888999999999998877776421122 2355665
No 15
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=91.85 E-value=0.82 Score=36.32 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=48.5
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|+.+.|.++|.+|++.|.+..+++..|... +....
T Consensus 16 agk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~~~~ 51 (101)
T 3on1_A 16 ARQLLTGEEQVVKAVQNGQVTLVILSSDAGI--------------------------------------------HTKKK 51 (101)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HHHHH
T ss_pred HCCEeECHHHHHHHHHcCCCcEEEEeCCCCH--------------------------------------------HHHHH
Confidence 5899999999999999999999999887621 12334
Q ss_pred HHHHHHhcCCEEEEecCCCchhhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
+...+...+..+.++.+..+-|.-
T Consensus 52 i~~~c~~~~ip~~~~~s~~eLG~a 75 (101)
T 3on1_A 52 LLDKCGSYQIPVKVVGNRQMLGRA 75 (101)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCHHHHHHH
Confidence 677788889999988887777765
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=91.74 E-value=0.93 Score=36.01 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=53.3
Q ss_pred CCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 298 DTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 298 ~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
..|+.+.|.++|.+|++.|.+..+++..|... +...
T Consensus 16 kagk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~~~ 51 (101)
T 3v7q_A 16 RARKVVSGEDLVIKEIRNARAKLVLLTEDASS--------------------------------------------NTAK 51 (101)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HHHH
T ss_pred hhhhcccchhhhHHHHhcCceeEEEEeccccc--------------------------------------------cchh
Confidence 35899999999999999999999999887621 1223
Q ss_pred HHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEe
Q 013759 378 WFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGIL 414 (437)
Q Consensus 378 ~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiL 414 (437)
.+...+...+..+.++.+..+-|.-+=+.+.-+.||+
T Consensus 52 ~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~ 88 (101)
T 3v7q_A 52 KVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVT 88 (101)
T ss_dssp HHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred hhcccccccCCCeeeechHHHHHhhhCccceEEEEEe
Confidence 4667788899999999887777765222223345553
No 17
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=91.69 E-value=0.32 Score=37.21 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=50.1
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|+.+.|.++|.+|++.|.+..++|..|.. +++...
T Consensus 9 agk~~~G~~~v~kai~~gkaklViiA~D~~--------------------------------------------~~~~~~ 44 (82)
T 3v7e_A 9 AKSIIIGTKQTVKALKRGSVKEVVVAKDAD--------------------------------------------PILTSS 44 (82)
T ss_dssp CSEEEESHHHHHHHHTTTCEEEEEEETTSC--------------------------------------------HHHHHH
T ss_pred cCCeeEcHHHHHHHHHcCCeeEEEEeCCCC--------------------------------------------HHHHHH
Confidence 489999999999999999999999988762 123456
Q ss_pred HHHHHHhcCCEEEEecCCCchhhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
+...+...|.-+.++++..+.|.-
T Consensus 45 i~~lc~~~~Ip~~~v~sk~eLG~a 68 (82)
T 3v7e_A 45 VVSLAEDQGISVSMVESMKKLGKA 68 (82)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCHHHHHHH
Confidence 888999999999999987776654
No 18
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=91.63 E-value=1.3 Score=35.99 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 298 DTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 298 ~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
..|+.+.|.++|.+|++.|.+..++|..|.. . +...
T Consensus 23 kagk~~~G~~~t~kai~~gkakLVilA~D~~------------~--------------------------------~~~~ 58 (112)
T 3iz5_f 23 KSGKYTLGYKTVLKTLRSSLGKLIILANNCP------------P--------------------------------LRKS 58 (112)
T ss_dssp TTCEEEESHHHHHHHHHTTCCSEEEECSCCC------------H--------------------------------HHHH
T ss_pred HhCCeeECHHHHHHHHHcCCceEEEEeCCCC------------H--------------------------------HHHH
Confidence 3589999999999999999999999988762 1 1234
Q ss_pred HHHHHHHhcCCEEEEe-cCCCchhhh
Q 013759 378 WFANEYRRFGCTLEFV-TNKSQEGSQ 402 (437)
Q Consensus 378 ~Lve~a~~~ga~V~iv-s~~~e~G~q 402 (437)
.+...+...+..+.++ .+..+.|.-
T Consensus 59 ~i~~~c~~~~ipv~~~~~s~~eLG~A 84 (112)
T 3iz5_f 59 EIETYAMLAKISVHHFHGNNVDLGTA 84 (112)
T ss_dssp HHHHHHHHTTCCEECCCCTTCTHHHH
T ss_pred HHHHHHHHcCCcEEEeCCCHHHHHHH
Confidence 5778888999999999 777787765
No 19
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=91.10 E-value=0.69 Score=36.99 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|+.+.|.++|.+|++.|.+..+++..|.. . +....
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~~------------~--------------------------------~~~~~ 55 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNCP------------T--------------------------------VRKSE 55 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTSC------------H--------------------------------HHHHH
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCCC------------H--------------------------------HHHHH
Confidence 479999999999999999999999988762 1 11234
Q ss_pred HHHHHHhcCCEEE-EecCCCchhhhhccccc-cEEEEee
Q 013759 379 FANEYRRFGCTLE-FVTNKSQEGSQFCRGFG-GIGGILR 415 (437)
Q Consensus 379 Lve~a~~~ga~V~-ivs~~~e~G~q~L~~~g-GIaAiLR 415 (437)
+...+...+..+. ++.+..+-|.-+=+..+ .+.||+=
T Consensus 56 i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D 94 (104)
T 4a18_G 56 IEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILD 94 (104)
T ss_dssp HHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEE
T ss_pred HHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEec
Confidence 6667778899988 57888777765222222 2456653
No 20
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=90.88 E-value=0.94 Score=37.23 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccch
Q 013759 289 GKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELE 368 (437)
Q Consensus 289 ~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~ 368 (437)
+++++.+... |..+.|.++|.+|++.|.+..++|..|....
T Consensus 18 ~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~p~-------------------------------------- 58 (120)
T 1xbi_A 18 KELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVKPE-------------------------------------- 58 (120)
T ss_dssp HHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCSSG--------------------------------------
T ss_pred HHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCChH--------------------------------------
Confidence 3444444444 7999999999999999999999998876210
Q ss_pred hcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccc-cccEEEEeee
Q 013759 369 VQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRG-FGGIGGILRY 416 (437)
Q Consensus 369 ~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~-~gGIaAiLRy 416 (437)
+++..|...+...|.-+.++.+..+-|.-+=.. --.++||+-+
T Consensus 59 -----~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~ 102 (120)
T 1xbi_A 59 -----EVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINE 102 (120)
T ss_dssp -----GGTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred -----HHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEecc
Confidence 011126677888888888888887777642112 1235666644
No 21
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=90.20 E-value=1.1 Score=37.13 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|..+.|..+|.+|++.|.+..++|..+.. + .+++..
T Consensus 22 ~gkl~~G~~~v~Kai~~gka~LViiA~D~~--------p-----------------------------------~~~~~~ 58 (126)
T 2xzm_U 22 QDAISKGLHEVLRTIEAKQALFVCVAEDCD--------Q-----------------------------------GNYVKL 58 (126)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESSCC--------S-----------------------------------TTHHHH
T ss_pred cCCEeecHHHHHHHHHcCCceEEEEeCCCC--------h-----------------------------------HHHHHH
Confidence 478999999999999999999999988762 1 123345
Q ss_pred HHHHHHhcCCEEEEecCCCchhhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
+...+..+|..+.++++..+.|.-
T Consensus 59 i~~lc~~~~Ip~~~v~sk~~LG~a 82 (126)
T 2xzm_U 59 VKALCAKNEIKYVSVPKRASLGEY 82 (126)
T ss_dssp HHHHHHHTTCCEEEESCSHHHHHH
T ss_pred HHHHHHHhCCCEEEECCHHHHHHH
Confidence 778899999999999988776653
No 22
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=90.01 E-value=1.4 Score=36.94 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|..+.|.++|.+|++.|.+..+++..|.. + ..++..
T Consensus 39 agklv~G~~~v~kal~~gkaklViiA~D~~--------~-----------------------------------~~~~~~ 75 (135)
T 2aif_A 39 YKQLRKGANEATKALNRGIAEIVLLAADAE--------P-----------------------------------LEILLH 75 (135)
T ss_dssp TTCEEESHHHHHHHHHTTCEEEEEEETTCS--------C-----------------------------------HHHHHH
T ss_pred cCCcccCHHHHHHHHHcCCCeEEEEecCCC--------h-----------------------------------HHHHhH
Confidence 489999999999999999999999987762 0 112345
Q ss_pred HHHHHHhcCCEEEEecCCCchhhhhccccccE--EEEe
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQFCRGFGGI--GGIL 414 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGI--aAiL 414 (437)
+...+...+.-+.++.+..+-|.- +-.--++ +||+
T Consensus 76 l~~lc~~~~IP~~~v~sk~eLG~a-~G~~~~v~~vaI~ 112 (135)
T 2aif_A 76 LPLVCEDKNTPYVFVRSKVALGRA-CGVSRPVIAAAIT 112 (135)
T ss_dssp HHHHHHHTTCCEEEESCHHHHHHH-TTCSSCCSEEEEE
T ss_pred HHHHHHhcCCcEEEECCHHHHHHH-hCCCCcEEEEEEE
Confidence 778888999999999887777765 3222344 5555
No 23
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=89.80 E-value=0.66 Score=38.36 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=47.5
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|..+.|.++|.+|++.|.+..+++..|.... . ++..
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~~p~----------~---------------------------------~~~~ 65 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADADPI----------E---------------------------------IVLH 65 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTCSSG----------G---------------------------------GGTT
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCCChH----------H---------------------------------HHHH
Confidence 47999999999999999999999999886210 0 0112
Q ss_pred HHHHHHhcCCEEEEecCCCchhhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
+...+...|.-+.++.+..+-|.-
T Consensus 66 l~~lc~~~~VP~~~v~sk~eLG~a 89 (122)
T 3o85_A 66 LPLACEDKGVPYVFIGSKNALGRA 89 (122)
T ss_dssp HHHHHHTTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHhCCCEEEECCHHHHHHH
Confidence 667778889988888887777765
No 24
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=89.71 E-value=1.4 Score=34.86 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|+.+.|.++|.+|++.|.+..+++..|.. ++.+..
T Consensus 14 agkl~~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 49 (101)
T 1w41_A 14 TGKIVMGARKSIQYAKMGGAKLIIVARNAR--------------------------------------------PDIKED 49 (101)
T ss_dssp HSEEEESHHHHHHHHHHTCCSEEEEETTSC--------------------------------------------HHHHHH
T ss_pred cCCEeECHHHHHHHHHcCCCcEEEEeCCCC--------------------------------------------HHHHHH
Confidence 379999999999999999999999987741 122345
Q ss_pred HHHHHHhcCCEEEEe-cCCCchhhhhccccc-cEEEEeee
Q 013759 379 FANEYRRFGCTLEFV-TNKSQEGSQFCRGFG-GIGGILRY 416 (437)
Q Consensus 379 Lve~a~~~ga~V~iv-s~~~e~G~q~L~~~g-GIaAiLRy 416 (437)
+...+...+.-+.++ .+..+-|.-+=...+ .++||+-.
T Consensus 50 l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~ 89 (101)
T 1w41_A 50 IEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDP 89 (101)
T ss_dssp HHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEEC
T ss_pred HHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecC
Confidence 777888889998876 777777765222223 25677754
No 25
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=89.70 E-value=1.2 Score=35.56 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=47.4
Q ss_pred CCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 298 DTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 298 ~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
..|+.+.|.++|.+|++.|.+..+++..|.. . +...
T Consensus 19 kagk~v~G~~~v~kai~~gkaklVilA~D~~------------~--------------------------------~~~~ 54 (105)
T 3u5e_c 19 KSGKYTLGYKSTVKSLRQGKSKLIIIAANTP------------V--------------------------------LRKS 54 (105)
T ss_dssp TTSEEEESHHHHHHHHHTTCCSEEEECTTSC------------H--------------------------------HHHH
T ss_pred HhCCeeECHHHHHHHHHcCCceEEEEeCCCC------------H--------------------------------HHHH
Confidence 3589999999999999999999999988752 1 1233
Q ss_pred HHHHHHHhcCCEEE-EecCCCchhhh
Q 013759 378 WFANEYRRFGCTLE-FVTNKSQEGSQ 402 (437)
Q Consensus 378 ~Lve~a~~~ga~V~-ivs~~~e~G~q 402 (437)
.+...+...+..+. ++.+..+-|.-
T Consensus 55 ~i~~~c~~~~ip~~~~~~s~~eLG~A 80 (105)
T 3u5e_c 55 ELEYYAMLSKTKVYYFQGGNNELGTA 80 (105)
T ss_dssp HHHHHHHHHTCEEEECSSCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 46677788888888 57777777765
No 26
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=89.14 E-value=1.3 Score=35.70 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=54.0
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.+..+.|.++|.+|++.|.+..+++..|.. ++.+..
T Consensus 19 agkl~~G~~~v~kai~~gka~lViiA~D~~--------------------------------------------~~~~~~ 54 (110)
T 3cpq_A 19 TGKVILGSKRTIKFVKHGEGKLVVLAGNIP--------------------------------------------KDLEED 54 (110)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTCB--------------------------------------------HHHHHH
T ss_pred cCCeeeCHHHHHHHHHcCCceEEEEeCCCC--------------------------------------------HHHHHH
Confidence 379999999999999999999999987751 123445
Q ss_pred HHHHHHhcCCEEEEe-cCCCchhhhhccccc-cEEEEeee
Q 013759 379 FANEYRRFGCTLEFV-TNKSQEGSQFCRGFG-GIGGILRY 416 (437)
Q Consensus 379 Lve~a~~~ga~V~iv-s~~~e~G~q~L~~~g-GIaAiLRy 416 (437)
|...+...+..++++ .+..+.|.-+=.... .++||+-.
T Consensus 55 l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~ 94 (110)
T 3cpq_A 55 VKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDE 94 (110)
T ss_dssp HHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred HHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecC
Confidence 777888899998887 777777765222223 25777754
No 27
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=88.70 E-value=1.8 Score=36.31 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=48.8
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|..+.|.++|.+|++.|.+..++|+.|.. + . +++..
T Consensus 30 ~gkl~~G~~~v~kai~~gkakLViiA~D~~--------p---~--------------------------------~~~~~ 66 (134)
T 2ale_A 30 LRQLKKGANEATKTLNRGISEFIIMAADCE--------P---I--------------------------------EILLH 66 (134)
T ss_dssp TTCEEESHHHHHHHHHHTCEEEEEEETTCS--------S---G--------------------------------GGGTH
T ss_pred cCCcccCchHHHHHHHhCCCeEEEEeCCCC--------H---H--------------------------------HHHHH
Confidence 479999999999999999999999988762 1 0 11224
Q ss_pred HHHHHHhcCCEEEEecCCCchhhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
|...+...|.-+.++.+..+.|.-
T Consensus 67 l~~lc~~~~VP~~~v~sk~eLG~a 90 (134)
T 2ale_A 67 LPLLCEDKNVPYVFVPSRVALGRA 90 (134)
T ss_dssp HHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCHHHHHHH
Confidence 778889999999999887777764
No 28
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=86.67 E-value=2.4 Score=34.73 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=46.5
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
.|..+.|.++|.+|++.|.+..+++..|.... . ++..
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~~~~----------~---------------------------------~~~~ 63 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDVQPE----------E---------------------------------IVMH 63 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCCSSG----------G---------------------------------GTTT
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCCChH----------H---------------------------------HHHH
Confidence 37999999999999999999999998876211 0 0112
Q ss_pred HHHHHHhcCCEEEEecCCCchhhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
|...+...|.-+.++.+..+-|.-
T Consensus 64 l~~lc~~~~Vp~~~~~sk~eLG~a 87 (120)
T 1vq8_F 64 IPELADEKGVPFIFVEQQDDLGHA 87 (120)
T ss_dssp HHHHHHTTCCCEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCHHHHHHH
Confidence 566777888888888887777764
No 29
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=86.22 E-value=2.4 Score=34.90 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=52.7
Q ss_pred CcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHH
Q 013759 300 GKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWF 379 (437)
Q Consensus 300 ~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~L 379 (437)
++.+.|.++|.+|++.|.+..+++..|.... . ++..|
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~~~~----------~---------------------------------~~~~l 63 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDVDPP----------E---------------------------------IVMHL 63 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTCSSG----------G---------------------------------GTTTH
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCCChH----------H---------------------------------HHHHH
Confidence 7899999999999999999999998886211 0 01126
Q ss_pred HHHHHhcCCEEEEecCCCchhhhhccc-cccEEEEeee
Q 013759 380 ANEYRRFGCTLEFVTNKSQEGSQFCRG-FGGIGGILRY 416 (437)
Q Consensus 380 ve~a~~~ga~V~ivs~~~e~G~q~L~~-~gGIaAiLRy 416 (437)
...+...+.-+.++.+..+-|.-+=.. --.++||+-+
T Consensus 64 ~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~ 101 (124)
T 2fc3_A 64 PLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEP 101 (124)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred HHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECc
Confidence 677788888888888887777652122 1245666654
No 30
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=85.65 E-value=2.5 Score=34.51 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=52.5
Q ss_pred CcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHH
Q 013759 300 GKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWF 379 (437)
Q Consensus 300 ~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~L 379 (437)
|..+.|.++|.+|++.|.+..++++.|.. + . +++..|
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~~--------~---~--------------------------------~~~~~l 62 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDVD--------P---P--------------------------------EIVAHL 62 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCCS--------C---S--------------------------------TTTTHH
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCCC--------h---H--------------------------------HHHHHH
Confidence 78999999999999999999999988762 1 0 011236
Q ss_pred HHHHHhcCCEEEEecCCCchhhhhccc-cccEEEEeee
Q 013759 380 ANEYRRFGCTLEFVTNKSQEGSQFCRG-FGGIGGILRY 416 (437)
Q Consensus 380 ve~a~~~ga~V~ivs~~~e~G~q~L~~-~gGIaAiLRy 416 (437)
...+...|.-+.++.+..+-|.-+=.. --.++||+-+
T Consensus 63 ~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~ 100 (119)
T 1rlg_A 63 PLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINE 100 (119)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEEC
T ss_pred HHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecC
Confidence 677788888888888877777652112 1235666644
No 31
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=76.23 E-value=8.9 Score=31.55 Aligned_cols=29 Identities=38% Similarity=0.615 Sum_probs=27.0
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCC
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENL 327 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l 327 (437)
.|+.+.|.++|.+|++.|.+..+||..|.
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 37999999999999999999999998876
No 32
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=74.97 E-value=1.6 Score=37.15 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCC
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLD 328 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~ 328 (437)
.+..+.|.++|.+|++.|.+..++|..|..
T Consensus 48 agkl~~G~kev~KaI~~gkakLVIIA~D~~ 77 (144)
T 2jnb_A 48 YKQLRKGANEATKTLNRGISEFIVMAADAE 77 (144)
T ss_dssp TTCCCBCHHHHHHHHHHTCEEEEEEETTCS
T ss_pred cCCccccHHHHHHHHHhCCCeEEEEeCCCC
Confidence 478999999999999999999999998873
No 33
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=71.61 E-value=3.8 Score=34.69 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=45.7
Q ss_pred CcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHH
Q 013759 300 GKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWF 379 (437)
Q Consensus 300 ~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~L 379 (437)
+..+-|..++.+|++.|.+..++|.++.. +.+++..+
T Consensus 39 g~l~~G~~et~Kal~kg~a~LvvLA~D~~-------------------------------------------~~~i~k~i 75 (143)
T 3u5c_M 39 DGLARGLRESTKALTRGEALLVVLVSSVT-------------------------------------------EANIIKLV 75 (143)
T ss_dssp TCEEESHHHHHHHHSSTTCSCEECCSCCS-------------------------------------------TTHHHHHH
T ss_pred CCEeEcHHHHHHHHhcCceeEEEEeCCCC-------------------------------------------HHHHHHHH
Confidence 68999999999999999999999987752 01223346
Q ss_pred HHHHH--hcCCEEEEecCCCchhh
Q 013759 380 ANEYR--RFGCTLEFVTNKSQEGS 401 (437)
Q Consensus 380 ve~a~--~~ga~V~ivs~~~e~G~ 401 (437)
...+. .++..+..|++..+.|+
T Consensus 76 ~~lC~~~e~~IP~i~V~s~keLG~ 99 (143)
T 3u5c_M 76 EGLANDPENKVPLIKVADAKQLGE 99 (143)
T ss_dssp HHHHHCSSSCCCCCCCSCHHHHHH
T ss_pred HHHHhhhhhCCCEEEECCHHHHhH
Confidence 67788 88888999988666554
No 34
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=68.22 E-value=2 Score=37.50 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=17.5
Q ss_pred EEEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 333 VLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 333 ~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
.|+|+.||.... + .....||.||.+
T Consensus 138 ~~~C~~CG~i~~----~-----~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAV----D-----EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEE----S-----CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeC----C-----CCCCCCCCCCCC
Confidence 389999998532 1 122489999976
No 35
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=68.09 E-value=9.6 Score=30.84 Aligned_cols=78 Identities=9% Similarity=0.242 Sum_probs=55.6
Q ss_pred cCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHH
Q 013759 297 QDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLL 376 (437)
Q Consensus 297 ~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvv 376 (437)
+.+.....|..+|.+|++.|.+..++|..|.. . .+++
T Consensus 21 ~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~-----------p--------------------------------~~i~ 57 (113)
T 3jyw_G 21 PKPYAVKYGLNHVVALIENKKAKLVLIANDVD-----------P--------------------------------IELV 57 (113)
T ss_dssp SSSSCEEESHHHHHHTTTTTCCSEEEECSCCS-----------S--------------------------------HHHH
T ss_pred CCCchhhchHHHHHHHHHcCCceEEEEeCCCC-----------H--------------------------------HHHH
Confidence 45567889999999999999999999988762 1 0122
Q ss_pred HHHHHHHHhcCCEEEEecCCCchhhhhccccccEEEEeeee
Q 013759 377 EWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQ 417 (437)
Q Consensus 377 e~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIaAiLRy~ 417 (437)
..|...+..+|.-+.++++..+.|.-.=...--+.||+-+.
T Consensus 58 ~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~~a~vai~d~~ 98 (113)
T 3jyw_G 58 VFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVR 98 (113)
T ss_dssp TTHHHHHHHTTCCCEECSCSTTTHHHHCSSSCCSEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHHCCCCcEEEEEEeCC
Confidence 23778889999999999998877764212222345665443
No 36
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=64.17 E-value=13 Score=34.40 Aligned_cols=72 Identities=8% Similarity=0.154 Sum_probs=50.3
Q ss_pred CcEEECHHHHHHHHHhC--CccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 300 GKYVFGADDTLKALDMG--AVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 300 ~~a~yG~~~V~~Al~~G--aV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
...+||...|.+|++.| .+..|+++++.. .. . ..
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~-------~~---~----------------------------------~~ 47 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGRE-------DK---R----------------------------------LL 47 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSCC-------CT---T----------------------------------TH
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCcc-------ch---h----------------------------------HH
Confidence 35789999999999998 589999987651 00 0 12
Q ss_pred HHHHHHHhcCCEEEEecCCCchhhhh--ccccccEEEEeeee
Q 013759 378 WFANEYRRFGCTLEFVTNKSQEGSQF--CRGFGGIGGILRYQ 417 (437)
Q Consensus 378 ~Lve~a~~~ga~V~ivs~~~e~G~q~--L~~~gGIaAiLRy~ 417 (437)
++++.+...|..+.+++..-- .++ .....||.|+.+.+
T Consensus 48 ~l~~~~~~~~i~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~ 87 (253)
T 1gz0_A 48 PLIHALESQGVVIQLANRQYL--DEKSDGAVHQGIIARVKPG 87 (253)
T ss_dssp HHHHHHHHHTCEEEEECSHHH--HHTTTSCCCTTEEEEECCC
T ss_pred HHHHHHHHCCCcEEEeCHHHH--HHHhCCCCCcEEEEEEecc
Confidence 367778888999999986321 121 13468999998753
No 37
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=61.87 E-value=11 Score=31.67 Aligned_cols=19 Identities=16% Similarity=-0.069 Sum_probs=12.6
Q ss_pred EEEeecCCCceeEEEEcCCCCcE
Q 013759 320 TLIVWENLDITRYVLKNTVTGEI 342 (437)
Q Consensus 320 tLlV~d~l~~~~~~~r~~~~~~~ 342 (437)
.|.|.+.- ..|+|.+||..
T Consensus 61 ~L~i~~~p----~~~~C~~CG~~ 79 (139)
T 3a43_A 61 EIEFVEEE----AVFKCRNCNYE 79 (139)
T ss_dssp EEEEEEEC----CEEEETTTCCE
T ss_pred EEEEEecC----CcEECCCCCCE
Confidence 56554443 13899999985
No 38
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=60.69 E-value=15 Score=34.57 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=47.5
Q ss_pred cEEECHHHHHHHHHhC-CccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHH
Q 013759 301 KYVFGADDTLKALDMG-AVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWF 379 (437)
Q Consensus 301 ~a~yG~~~V~~Al~~G-aV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~L 379 (437)
-.+||...|.+|++.| .+..|+++++.. . + ..+
T Consensus 35 flveG~~~V~eaL~~~~~i~~l~~~~~~~--------~------------------------------------~--~~l 68 (277)
T 3nk6_A 35 TLIEDTEPLMECIRAGVQFIEVYGSSGTP--------L------------------------------------D--PAL 68 (277)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTSC--------C------------------------------------C--HHH
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEeCCcc--------C------------------------------------c--HHH
Confidence 4789999999999998 688888877651 0 0 136
Q ss_pred HHHHHhcCCEEEEecCCCchhhhh--ccccccEEEEeeee
Q 013759 380 ANEYRRFGCTLEFVTNKSQEGSQF--CRGFGGIGGILRYQ 417 (437)
Q Consensus 380 ve~a~~~ga~V~ivs~~~e~G~q~--L~~~gGIaAiLRy~ 417 (437)
++.+...|..|..++...- .++ .....||.|+.+.+
T Consensus 69 ~~~~~~~~~~v~~v~~~~l--~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 69 LDLCRQREIPVRLIDVSIV--NQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp HHHHHHTTCCEEEECHHHH--TTCC-----CCEEEEEECC
T ss_pred HHHHHhcCCcEEEECHHHH--HHhhCCCCCCeEEEEEecC
Confidence 7778888999999985321 110 13467899999866
No 39
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=60.30 E-value=7.7 Score=36.21 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=46.5
Q ss_pred CCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 298 DTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 298 ~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
.++..+.|..+|.+|++.|.+..++|..|.. + . +++.
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~Das--------P---~--------------------------------ei~~ 168 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVD--------P---I--------------------------------ELVV 168 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCS--------S---S--------------------------------TTTT
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCC--------H---H--------------------------------HHHH
Confidence 4567899999999999999999999998862 1 0 0111
Q ss_pred HHHHHHHhcCCEEEEecCCCchhhh
Q 013759 378 WFANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 378 ~Lve~a~~~ga~V~ivs~~~e~G~q 402 (437)
.|...+...|.-+.+|.+..+.|.-
T Consensus 169 ~Lp~LC~~~~VPyi~v~sk~eLG~A 193 (266)
T 2zkr_f 169 FLPALCRKMGVPYCIIKGKARLGHL 193 (266)
T ss_dssp HHHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCHHHHHHH
Confidence 3557778888888888877666653
No 40
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=59.12 E-value=13 Score=34.74 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=23.6
Q ss_pred CcEEECHHHHHHHHHhC-CccEEEeecCC
Q 013759 300 GKYVFGADDTLKALDMG-AVDTLIVWENL 327 (437)
Q Consensus 300 ~~a~yG~~~V~~Al~~G-aV~tLlV~d~l 327 (437)
.-.+||...|.+|++.| .+..|+++++.
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~ 56 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGG 56 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTC
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCc
Confidence 35789999999999988 58888887765
No 41
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=52.27 E-value=30 Score=32.03 Aligned_cols=60 Identities=12% Similarity=0.295 Sum_probs=46.5
Q ss_pred CcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHH
Q 013759 300 GKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWF 379 (437)
Q Consensus 300 ~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~L 379 (437)
....+|..+|.+|++.|.+..++|..|.. + . +++..|
T Consensus 130 ~~lk~G~keV~KaIekgKAkLVVIA~Dad--------P---~--------------------------------eivk~L 166 (256)
T 3izc_H 130 YAVKYGLNHVVALIENKKAKLVLIANDVD--------P---I--------------------------------ELVVFL 166 (256)
T ss_dssp CCEEESHHHHHHHHHHTCCSEEEEESCCS--------S---G--------------------------------GGTTHH
T ss_pred hhhhccHHHHHHHHHhCcceEEEEeCCCC--------h---H--------------------------------HHHHHH
Confidence 34679999999999999999999988762 1 0 111236
Q ss_pred HHHHHhcCCEEEEecCCCchhhh
Q 013759 380 ANEYRRFGCTLEFVTNKSQEGSQ 402 (437)
Q Consensus 380 ve~a~~~ga~V~ivs~~~e~G~q 402 (437)
...+..+|.-+.++.+..+.|.-
T Consensus 167 paLC~k~gVPy~~V~sK~eLG~A 189 (256)
T 3izc_H 167 PALCKKMGVPYAIVKGKARLGTL 189 (256)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHhcCCCEEEECCHHHHHHH
Confidence 78888999999999988777754
No 42
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=52.26 E-value=26 Score=30.83 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 306 ADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 306 ~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
....++.++.|.+=.- +. -..|+|+.||.... .. .....||.||.+
T Consensus 135 ~~~~l~~l~~~~~~~~---~~----~~~~~C~~CG~~~~---g~-----~~p~~CP~C~~~ 180 (191)
T 1lko_A 135 FLDFARNIKEGRVFLR---EQ----ATKWRCRNCGYVHE---GT-----GAPELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHTCSSEE---EE----EEEEEETTTCCEEE---EE-----ECCSBCTTTCCB
T ss_pred HHHHHHhhhccccccc---CC----CceEEECCCCCEee---CC-----CCCCCCCCCcCC
Confidence 4455666677765321 11 12389999998532 10 112389999976
No 43
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=48.30 E-value=8.5 Score=31.24 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=17.7
Q ss_pred EEcCCCCcEEEEeeccchhcccCcc-cCCCcccc
Q 013759 334 LKNTVTGEIVIKHLNREQETNQNNF-RDSATSAE 366 (437)
Q Consensus 334 ~r~~~~~~~~~~~~~~~~~~~r~~~-~cp~~g~~ 366 (437)
|+|.+||... .+ ....+ .||.||+.
T Consensus 74 ~~C~~CG~~~--e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVF--KP------NALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEE--CS------CCSTTCCCSSSSSC
T ss_pred EEcCCCCCEE--eC------CCCCCCcCccccCC
Confidence 8999999742 11 13356 89999976
No 44
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=46.56 E-value=7.4 Score=33.40 Aligned_cols=60 Identities=2% Similarity=-0.116 Sum_probs=34.5
Q ss_pred cEEECHHHHHHHHHhCCccEEEeecCCCce-eEEEEcCCCCcEEEEeeccchhcccCcccCCCccccch
Q 013759 301 KYVFGADDTLKALDMGAVDTLIVWENLDIT-RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELE 368 (437)
Q Consensus 301 ~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~-~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~ 368 (437)
..+-+-....+.+..-.|..+=+.+-+... .|.++|..||.. +... .....||.||+++.
T Consensus 99 ~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~~~~~y~C~~Cg~~--~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 99 EIFSDDYNVQNIASLLGLRFRTLKRGIKKVIKWRYVCIGCGRK--FSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEECCCHHHHHHHHHTTCCEECCSCCCSSCCCCCEEESSSCCE--ESSC------CGGGBCTTTCCBEE
T ss_pred eEEcCcHHHHHHHHHCCCeEEchhhhccccccEEEECCCCCCc--ccCC------CCCCcCCCCCCcce
Confidence 444444455666666566666555433332 456899999973 1100 12347999998743
No 45
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=44.04 E-value=12 Score=33.35 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=18.0
Q ss_pred EEEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 333 VLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 333 ~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
.|+|+.||.... . ...+.||.||.+
T Consensus 171 ~~~C~~CG~i~~---g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK---G------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE---S------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEc---C------cCCCCCCCCCCC
Confidence 389999998532 1 123799999976
No 46
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=41.56 E-value=1.3e+02 Score=27.59 Aligned_cols=94 Identities=13% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc------cCCCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCC
Q 013759 265 FNQAIELSAESLSNVKFIQEKRLIGKYFEEIS------QDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTV 338 (437)
Q Consensus 265 l~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~------~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~ 338 (437)
..+++.-+..---+++..+-.+++.+-....+ +.+-....|..+|..+++.|....++|..|.. +
T Consensus 82 a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~Dvd--------P- 152 (255)
T 4a17_F 82 SSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVD--------P- 152 (255)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCS--------S-
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcCCceEEEEeCCCC--------h-
Confidence 34444433322223444555555554433322 22334678999999999999999999988762 1
Q ss_pred CCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhh
Q 013759 339 TGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGS 401 (437)
Q Consensus 339 ~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~ 401 (437)
.+++-.|-..+..+|.-..+|.+..+.|.
T Consensus 153 ----------------------------------ielv~~LPaLCee~~VPY~~V~sK~~LG~ 181 (255)
T 4a17_F 153 ----------------------------------IELVIFLPQLCRKNDVPFAFVKGKAALGK 181 (255)
T ss_dssp ----------------------------------THHHHHHHHHHHHTTCCEEEESCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 12334466778888888888887766664
No 47
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=38.87 E-value=53 Score=28.28 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=45.3
Q ss_pred CcEEECHHHHHHHH--HhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHH
Q 013759 300 GKYVFGADDTLKAL--DMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLE 377 (437)
Q Consensus 300 ~~a~yG~~~V~~Al--~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve 377 (437)
+..+-|..++.+|+ +.|.+...+|..+.+.+.+ .. +++. .-
T Consensus 34 ~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~-------i~-------------------------~hi~-----~~ 76 (165)
T 2kg4_A 34 RTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRD-------VA-------------------------LQIH-----FT 76 (165)
T ss_dssp TCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGC-------HH-------------------------HHHH-----HH
T ss_pred CCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccch-------hh-------------------------hhcc-----HH
Confidence 68889999999999 9999999999877621100 00 0000 01
Q ss_pred HHHHHHHhcCCEEEEecCCCchhh
Q 013759 378 WFANEYRRFGCTLEFVTNKSQEGS 401 (437)
Q Consensus 378 ~Lve~a~~~ga~V~ivs~~~e~G~ 401 (437)
.+...+.++|..+..|++....|+
T Consensus 77 li~alC~E~~Ip~i~V~s~k~LG~ 100 (165)
T 2kg4_A 77 LIQAFCCENDINILRVSNPGRLAE 100 (165)
T ss_dssp HHHHHHHHTTCCEEEESCHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCHHHHHH
Confidence 255778899999999998766554
No 48
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=38.39 E-value=23 Score=29.81 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 307 DDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 307 ~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
..=++|+.+|+ |++ -||.+||.... .....||.||+.
T Consensus 34 ~~F~~~l~~gr---L~~----------~rC~~CG~~~~----------PPr~~Cp~C~s~ 70 (145)
T 3irb_A 34 EQFFNGLKQNK---IIG----------SKCSKCGRIFV----------PARSYCEHCFVK 70 (145)
T ss_dssp HHHHHHHHTTC---CEE----------EECTTTCCEEE----------SCCSEETTTTEE
T ss_pred HHHHHHHHcCe---EEE----------EEeCCCCcEEc----------CchhhCcCCCCC
Confidence 56788888885 454 48999997422 335679999975
No 49
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.69 E-value=36 Score=27.04 Aligned_cols=45 Identities=11% Similarity=-0.046 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 306 ADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 306 ~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
++++.+.+...- ..|+|.+ ++|.+||.. |..+. .+...||.|+++
T Consensus 49 LeHIaksl~r~g-~~L~v~p--------~~C~~CG~~---F~~~~----~kPsrCP~CkSe 93 (105)
T 2gmg_A 49 LKVISKIAKREG-MVLLIKP--------AQCRKCGFV---FKAEI----NIPSRCPKCKSE 93 (105)
T ss_dssp HHHHHHHHTTTT-EEEEECC--------CBBTTTCCB---CCCCS----SCCSSCSSSCCC
T ss_pred HHHHHHHHhcCC-cEEEEEC--------cChhhCcCe---ecccC----CCCCCCcCCCCC
Confidence 344444443311 3666643 589999974 32211 234689999986
No 50
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=35.65 E-value=15 Score=27.06 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=17.4
Q ss_pred EEEcCCCCcEEEEeeccchhcccCcccCCCccccch
Q 013759 333 VLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELE 368 (437)
Q Consensus 333 ~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~ 368 (437)
+++|+ |+...+. .. ..+...|| ||..+.
T Consensus 4 vv~C~-C~~~~~~---~~---~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 4 IFRCD-CGRALYS---RE---GAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEEET-TSCCEEE---ET---TCSEEEET-TTEEEE
T ss_pred EEECC-CCCEEEE---cC---CCcEEECC-CCCeee
Confidence 47999 9974221 11 14456898 998644
No 51
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=33.58 E-value=70 Score=29.45 Aligned_cols=60 Identities=15% Similarity=0.301 Sum_probs=47.4
Q ss_pred CCcEEECHHHHHHHHHhCCccEEEeecCCCceeEEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHH
Q 013759 299 TGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEW 378 (437)
Q Consensus 299 ~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~ 378 (437)
+-...+|..+|..+++.|....++|..|.+ ..+++-.
T Consensus 125 p~~lk~GvneVTklVE~kKAqLVVIA~DVd-------------------------------------------PiElV~f 161 (258)
T 3iz5_H 125 PIVVKYGLNHVTYLIEQSKAQLVVIAHDVD-------------------------------------------PIELVVW 161 (258)
T ss_dssp CCCEEESHHHHHHHHHTTCEEEEEEESCCS-------------------------------------------STHHHHH
T ss_pred CceeecccHHHHHHHHcCcceEEEEeCCCC-------------------------------------------hHHHHhH
Confidence 345679999999999999999999988762 1234556
Q ss_pred HHHHHHhcCCEEEEecCCCchhh
Q 013759 379 FANEYRRFGCTLEFVTNKSQEGS 401 (437)
Q Consensus 379 Lve~a~~~ga~V~ivs~~~e~G~ 401 (437)
|-.++..+|.-..+|++....|.
T Consensus 162 LPaLC~k~gVPY~iVk~KarLG~ 184 (258)
T 3iz5_H 162 LPALCRKMEVPYCIVKGKARLGS 184 (258)
T ss_dssp HHHHHTTTTCCEEEESCHHHHHH
T ss_pred HHHHHHhcCCCeEEECCHHHHHH
Confidence 77888899999999998766664
No 52
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.58 E-value=48 Score=22.12 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=18.2
Q ss_pred EEcCCCCcEEEEeeccchh------cccCcccCCCcccc
Q 013759 334 LKNTVTGEIVIKHLNREQE------TNQNNFRDSATSAE 366 (437)
Q Consensus 334 ~r~~~~~~~~~~~~~~~~~------~~r~~~~cp~~g~~ 366 (437)
|+|..||.. + .|+.+ .-...+.||.||..
T Consensus 5 y~C~vCGyv---y-d~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYE---Y-DPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCE---E-CGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeE---E-eCCcCCCcchhhCCCCCcCcCCCCc
Confidence 789999973 1 22211 11346899999975
No 53
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.02 E-value=32 Score=24.44 Aligned_cols=23 Identities=9% Similarity=-0.192 Sum_probs=16.3
Q ss_pred EEcCCCCcEEEEeeccchhcccCcccCCCccccch
Q 013759 334 LKNTVTGEIVIKHLNREQETNQNNFRDSATSAELE 368 (437)
Q Consensus 334 ~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~ 368 (437)
-+|++|+.- --+..||.||+...
T Consensus 7 r~C~~CgvY------------TLk~~CP~CG~~T~ 29 (60)
T 2apo_B 7 KKCPKCGLY------------TLKEICPKCGEKTV 29 (60)
T ss_dssp EECTTTCCE------------ESSSBCSSSCSBCB
T ss_pred eeCCCCCCE------------eccccCcCCCCcCC
Confidence 479989852 12567999998754
No 54
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.89 E-value=46 Score=25.12 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=19.1
Q ss_pred EEEcCCCCcEEEEeeccchh-------------cccCcccCCCcccc
Q 013759 333 VLKNTVTGEIVIKHLNREQE-------------TNQNNFRDSATSAE 366 (437)
Q Consensus 333 ~~r~~~~~~~~~~~~~~~~~-------------~~r~~~~cp~~g~~ 366 (437)
.|+|..||.. + .|+.. .-...|.||.||..
T Consensus 27 ~y~C~vCGyv---Y-D~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFE---Y-DEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCE---E-ETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEE---E-cCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 3899999974 1 22110 01446899999975
No 55
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=25.30 E-value=43 Score=32.77 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=22.2
Q ss_pred cCcccCCCccccc--hhcccccHHHHHHHHHHhcCCEEEEecCC
Q 013759 355 QNNFRDSATSAEL--EVQEKSSLLEWFANEYRRFGCTLEFVTNK 396 (437)
Q Consensus 355 r~~~~cp~~g~~~--~~~~~~dvve~Lve~a~~~ga~V~ivs~~ 396 (437)
...|.||.|+... +-...+..+.++++.+...=-+|.|-+++
T Consensus 286 ~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~~~dve~V~v~~DG 329 (371)
T 3i2d_A 286 IPTWQCPVCQIDIALENLAISEFVDDILQNCQKNVEQVELTSDG 329 (371)
T ss_dssp SCCCBCTTTCCBCCGGGEEEBHHHHHHHTTSCTTCCEEEEETTS
T ss_pred CCceeCCCCCcccCHHHeeEcHHHHHHHHhccCCccEEEECCCC
Confidence 5679999999763 22233444444444332222345555553
No 56
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.27 E-value=49 Score=25.31 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=9.5
Q ss_pred cCcccCCCcccc
Q 013759 355 QNNFRDSATSAE 366 (437)
Q Consensus 355 r~~~~cp~~g~~ 366 (437)
...|.||.||..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 446899999975
No 57
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.40 E-value=44 Score=23.66 Aligned_cols=20 Identities=0% Similarity=-0.167 Sum_probs=15.5
Q ss_pred EEcCCCCcEEEEeeccchhcccCcccCCCcc
Q 013759 334 LKNTVTGEIVIKHLNREQETNQNNFRDSATS 364 (437)
Q Consensus 334 ~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g 364 (437)
..|++||+.. +.-..||.||
T Consensus 31 ~~c~~cGe~~-----------~~H~vc~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMK-----------PPHTVCPECG 50 (60)
T ss_dssp EECTTTCCEE-----------CTTSCCTTTC
T ss_pred eECCCCCCee-----------cceEEcCCCC
Confidence 5899999742 5567899998
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.39 E-value=33 Score=27.10 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.9
Q ss_pred CCCccccch
Q 013759 360 DSATSAELE 368 (437)
Q Consensus 360 cp~~g~~~~ 368 (437)
||.||.+++
T Consensus 50 CPvCgs~l~ 58 (112)
T 1l8d_A 50 CPVCGRELT 58 (112)
T ss_dssp CTTTCCEEC
T ss_pred CCCCCCcCC
Confidence 556665543
No 59
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.25 E-value=63 Score=23.58 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=9.6
Q ss_pred cCcccCCCcccc
Q 013759 355 QNNFRDSATSAE 366 (437)
Q Consensus 355 r~~~~cp~~g~~ 366 (437)
...|.||.||..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 456899999975
No 60
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=21.52 E-value=84 Score=19.44 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred CCcccchh-h--hHHHHHHHHHHHHHHhc
Q 013759 2 ADGQETDK-N--IEIWKIKKLIKALEAAR 27 (437)
Q Consensus 2 ~~~~~~~~-~--~~~~~~~k~l~~l~~~~ 27 (437)
|||-+|.+ + ++.-..|++|++|.+.+
T Consensus 2 aDGtFTsd~s~~l~~~aak~fl~wL~~~k 30 (33)
T 2l63_A 2 ADGSFSDEMNTILDNLAARDFINWLIQTK 30 (33)
T ss_dssp CCSHHHHGGGHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68888764 2 66678999999998653
No 61
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.49 E-value=70 Score=21.85 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=9.5
Q ss_pred cCcccCCCcccc
Q 013759 355 QNNFRDSATSAE 366 (437)
Q Consensus 355 r~~~~cp~~g~~ 366 (437)
...+.||.||..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 456799999975
No 62
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.51 E-value=39 Score=22.70 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=15.1
Q ss_pred EEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 334 LKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 334 ~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
++|-.||.. .+.++...-....||.||=.
T Consensus 4 Y~C~rCg~~----fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 4 YRCGKCWKT----FTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp -CCCCTTTT----CCCCCSCCCSSSCCTTTCCS
T ss_pred EEeeccCCC----ccHHHHhhCCCcccCccCcE
Confidence 567667752 12222111234689999965
No 63
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=20.31 E-value=56 Score=23.11 Aligned_cols=20 Identities=0% Similarity=-0.247 Sum_probs=15.4
Q ss_pred EEcCCCCcEEEEeeccchhcccCcccCCCcc
Q 013759 334 LKNTVTGEIVIKHLNREQETNQNNFRDSATS 364 (437)
Q Consensus 334 ~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g 364 (437)
..|++||+.. .....||.||
T Consensus 31 ~~c~~cG~~~-----------~pH~vc~~CG 50 (60)
T 2zjr_Z 31 TECPQCHGKK-----------LSHHICPNCG 50 (60)
T ss_dssp EECTTTCCEE-----------CTTBCCTTTC
T ss_pred eECCCCCCEe-----------CCceEcCCCC
Confidence 5899999742 5567899998
No 64
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.28 E-value=70 Score=22.12 Aligned_cols=12 Identities=0% Similarity=-0.014 Sum_probs=9.5
Q ss_pred cCcccCCCcccc
Q 013759 355 QNNFRDSATSAE 366 (437)
Q Consensus 355 r~~~~cp~~g~~ 366 (437)
...+.||.||..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 456799999975
No 65
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.17 E-value=55 Score=23.93 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=18.1
Q ss_pred EEEcCCCCcEEEEeeccchhcccCcccCCCcccc
Q 013759 333 VLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE 366 (437)
Q Consensus 333 ~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~ 366 (437)
.++|..||.... +. ......||.||..
T Consensus 28 ~Y~C~~CG~~~e--~~-----~~d~irCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLS--LS-----RTDAVRCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEEC--CC-----TTSTTCCSSSCCC
T ss_pred EEECCCCCCcce--eC-----CCCCccCCCCCce
Confidence 479999997421 11 1345689999985
Done!