BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013760
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G+ D V L+E +++ + ++G+T LH AA+ GH E+VK L+SK + D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G+T LH A K +++IV LI V +D+ G T LH A K+G +IV+ L+S +G
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS-KG 126
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
DVN+ + G +PLD+A + GN E+ LL++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 99
AA G+ D V LLE +++ + ++GKT LH AA GH EVVK L+S+ DP+
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 100 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
D G+T LH+A + ++++V L+ DP+ +D+ G T LH+A + G ++V+ LL
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
S +G D N+ + G +PLD+A + GN E+ LL++ G
Sbjct: 124 S-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 169
A + N+D V +L+ V D+ G T LH+A + G ++V+ LLS +G D N+ +
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 170 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 205
G++PL +A + G+ E+ LL GA ++KD GK P
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 99
AA G+ D V LLE ++ + ++G+T LH AA GH E+VK L+SK DP+
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
D G+T LH A + +++IV L+ DP+ +D+ G T LH A + G +IV+ LL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
S +G D N+ + G +PLD+A + GN E+ LL++ G
Sbjct: 124 S-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 86.3 bits (212), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 68 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 127
NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
V +D G T LH+A + G ++V+ LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 188 SLLKEAGA 195
LL EAGA
Sbjct: 118 KLLLEAGA 125
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH AA GH++VV LLE +++ NG+T LH AAR GHLEVVK L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
+ DK G+T LH+A + + ++V L+ V +D G T LH+A + G ++V+ L
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 157 L 157
L
Sbjct: 121 L 121
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 19 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 78
+LL E V D + T LH AA GH++VV LLE +++ NG+T LH AAR
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77
Query: 79 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 123
GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 78 NGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 121
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+T LH+A + + ++V L+ V +D G T LH+A + G ++V+ LL G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 205
DVN+ +K G +PL +A + G+ E+ LL EAGA ++KD +G+ P
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 19 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 56
+LL E V D + T LH AA GH++VV LLE
Sbjct: 85 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G+ D V L+E +++ + ++G+T LH AA GH EVVK L+SK + D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G+T LH A + ++++V LI V +D+ G T LH A + G ++V+ L+S +G
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KG 126
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
DVN+ + G +PLD+A + GN E+ LL++ G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 10/186 (5%)
Query: 16 VLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 73
++K LL G PN+ +++ T LH AA GH +V +LL+ + + A+++ +T L
Sbjct: 29 IVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPL 84
Query: 74 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 133
H AAR+GH +VK L+ + + T G T LH+A + + + VL L+ + S +
Sbjct: 85 HCAARIGHTNMVKLLLENNANPNLAT-TAGHTPLHIAAREGHVETVLALLEKEASQACM- 142
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKE 192
KG T LH+A K G+ ++ LL + N+ K G +PL VA N ++ LL
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 193 AGAAHS 198
G+ HS
Sbjct: 202 GGSPHS 207
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH AA GH ++V LLE ++N +A G T LH AAR GH+E V AL+ K+ S
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 97 FRTD--------------------------------KKGQTALHMAVKGQNEDIVLELIR 124
T K G T LH+AV N DIV +L+
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLL 199
Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
P G T LHIA K+ + ++ R LL G N+ + G +PL +A + G+
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHA 258
Query: 185 ELFSLL 190
E+ +LL
Sbjct: 259 EMVALL 264
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH AA Q ++V LL+ + A G T LH AA+ GH E+V L+SK + G
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANG 271
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
+K G T LH+ + + + LI+ ++ G T LH+A G ++V+ L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
L + DVN+ K G SPL A + G+T++ +LL + GA+
Sbjct: 331 LQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 5/167 (2%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH A+ GH+ +V LL+ ++ ++ +T LH AAR GH EV K L+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
+ K QT LH A + + ++V +L+ + + L G+T LHIA ++G + V L
Sbjct: 75 AKA-KDDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 203
L E + K G +PL VA K G + LL E AH GK
Sbjct: 133 LEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGK 177
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH AA +GH ++V LL +N + +G T LH A+ GH+ V L+ G
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----G 301
Query: 97 FRTD---KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
D + G T LH+A N +V L++ V + G + LH A ++G T IV
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIV 360
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
LL G N ++ G +PL +A++LG + +LK
Sbjct: 361 TLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + A++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 9 AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 64
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
G DVN+ +K G++P D+A GN ++ +L++A
Sbjct: 124 -GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ + DK G T LH+A + + +IV L++
Sbjct: 3 GKKLL-EAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V +D G T LH+A ++G +IV LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 189 LLKEAGA 195
+L +AGA
Sbjct: 119 VLLKAGA 125
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 204
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + A++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 9 AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 64
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
G DVN+ +K G++P D+A + G+ ++ +L++A
Sbjct: 124 -GADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ + DK G T LH+A + + +IV L++
Sbjct: 3 GKKLL-EAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V +D G T LH+A ++G +IV LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 61 V-NAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 189 LLKEAGA 195
+L +AGA
Sbjct: 119 VLLKAGA 125
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 204
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + A++ +G T LH AAR GHLE+V+ L+ +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
DK G T LH+A + + +IV L++ V +D G T LH+A ++G +IV LL
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
G DVN+ +K G++ D++ GN +L +L+
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D T LH AA +GH+++V LL+ +++ +G T LH AAR GHLE+V+
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ + DK G T LH+A + + +IV L++ V +D G TA I+I
Sbjct: 99 LLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVRCL 156
G + L
Sbjct: 157 GNEDLAEIL 165
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ + DK G T LH+A + + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V +D G T LH+A ++G +IV LL G DVN+ +K G +PL +A + G+ E+
Sbjct: 73 V-NAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 189 LLKEAGA 195
+L +AGA
Sbjct: 131 VLLKAGA 137
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 204
DVN+ +K G +PL +A + G+ E+ +L +AGA A KD P
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 94
S+ LH AA G D++ LL+ +N ARN + V LH A + GH +VVK L+ +
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 95 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
+ D G T L A G + ++V L++ S+ +NKGNTALH A+ + +V
Sbjct: 145 PN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVE 202
Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
LL + G V LNK + +D AE+ N+++ LL+
Sbjct: 203 LLL-LHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN----GKTVLHSAARMGHLEVVKALVSKDPSTGF 97
A A G +++V +LLE + A + H + + ++K P++G
Sbjct: 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77
Query: 98 R---TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN------TALHIAIKKG 148
T + G + LH+A D++ P +LK N G LH+A ++G
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLI-------PLLLKHGANAGARNADQAVPLHLACQQG 130
Query: 149 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
Q+V+CLL N + +G +PL A G+ EL +LL + GA+
Sbjct: 131 HFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + N+G T LH AA GHLE+V+ L+ K+ + +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNAS 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G T LH+A + +IV L++ V DN G+T LH+A K G +IV LL
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK- 134
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
G DVN+ +K G++ D++ GN +L +L+
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V +DL+ T LH AAA GH+++V LL+ +++ N+G T LH AA+ GHLE+V+
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 132 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
V TD T LH AA+ GH+++V LL+ D N + + G T LH AA GHLE+V
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT---GITPLHLAAATGHLEIV 96
Query: 86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
+ L+ D G T LH+A K + +IV L++ V +D G TA I+I
Sbjct: 97 EVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISI 154
Query: 146 KKGRTQIVRCL 156
G + L
Sbjct: 155 DNGNEDLAEIL 165
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ TD G T LH+A + +IV E++ + +
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIV-EVLLKNGA 71
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
+ D G T LH+A G +IV LL G DVN+ + G +PL +A K G+ E+
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + + G T LH AAR+GHLE+V+ L+ K+ +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNAL 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G T LH+A K + +IV L++ V +D G+T LH+A G +IV LL
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
G DVN+ +K G++ D++ GN +L +L+
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D G T LH+A + + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V L D G+T LH+A K+G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 VNAL-DFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D S ST LH AA +GH+++V LL+ +++ G T LH AA GHLE+V+
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEV 131
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 132 LLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
ST LH A QGH+ +V L++ ++ + I G + +H AA+ GH +V L++K
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 96 GFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
D+ G T L A + + D L+ + SV + NTALH A+ G T ++
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
LL G +V++ N GES LD+A++ N + + L+EA A D
Sbjct: 195 LLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 98 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
+ DK+ T LH A D+V I V +L + +T LH A ++G +V L+
Sbjct: 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 194
G D + ++ G S + +A + G+T + + L G
Sbjct: 97 KY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + AR+ G T LH AA GHLE+V+ L+ +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK- 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G T LH+A + + +IV E++ + + + D+ G T LH+A K+G +IV LL
Sbjct: 77 DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK- 134
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVV 85
V D + T LH AA GH+++V LL+ N A + + G T LH AAR GHLE+V
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLK---NGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
+ L+ K+ + +D G T LH+A K + +IV E++ + + + +D G TA I+I
Sbjct: 97 EVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISI 154
Query: 146 KKGRTQIVRCL 156
G + L
Sbjct: 155 DNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ R D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIV-EVLLKNGA 71
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
+ +D+ G T LH+A ++G +IV LL G DVN+ + G +PL +A K G+ E+
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKNGA 137
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G D V L+ +++ A N G T LH AA GHLE+V+ L+ K + +D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDASDV 78
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G T LH+A + +IV L++ V + D+ G T LH+A K G +IV LL G
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK-HG 136
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
DVN+ +K G++ D++ GN +L +L++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D + +T LH AA GH+++V LL+ +++ + G T LH AA GHLE+V+
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ K+ + D G T LH+A K +IV L++ V +D G TA I+I
Sbjct: 99 LL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV-NAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVRCL 156
G + L
Sbjct: 157 GNEDLAEIL 165
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
G+ +L AAR G + V+ L++ D G T LH+A + +IV L++
Sbjct: 15 GRKLL-EAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D G T LH+A G +IV LL G DVN+++ G +PL +A K G E+
Sbjct: 73 V-DASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 42 AAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ D N A + G T LH AA GHLE+V+ L+ K+ +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVV---GWTPLHLAAYWGHLEIVEVLL-KNGADVNAY 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G T LH+A + +IV E++ + + + +D+ G T LH+A +G +IV LL
Sbjct: 77 DTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLL-EAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIV-EVLLKNGA 71
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
+ D G+T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKYGA 137
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + + G T LH AA+ GHLE+V+ L+
Sbjct: 21 AARAGQDDEVRILM---ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AW 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G T LH+A + +IV L++ V +D +G T LH+A G +IV LL
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V TD T LH AA GH+++V LL+ +++ N G T LH AA GHLE+V+
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ + D +G T LH+A + +IV L++ V +D G TA I+I
Sbjct: 99 LLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVRCL 156
G + L
Sbjct: 157 GNEDLAEIL 165
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ TD G T LH+A K + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V DN G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 V-NAWDNYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 15 LVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLH 74
L + E+L ++ V D +T LH AA GH+++V LL+ +++ G T LH
Sbjct: 60 LEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLH 118
Query: 75 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
AA GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 119 LAAYDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + D G+T LH+A K G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY-GA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFS-LLKEAGAAHSKDH 201
DVN+ + G +PL +A G+ E+ LLK ++KD+
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + ++ G T LH AA +GH E+V+ L+ R
Sbjct: 21 AARAGQDDEVRILM---ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR- 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G T LH+A + +IV L++ V +D G T LH+A +G +IV LL
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK- 134
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D +G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAH-DDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 V-NARDTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKHGA 137
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVK 86
V D T LH AA GH+++V LL+ +++ A+ A G T LH AA GHLE+V+
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY--GLTPLHLAADRGHLEIVE 130
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 131 VLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
A G LE +K + D S RTD+ +TALH A + +IV L+L P + +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 69
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
D+ G + LHIA GR +IV+ LL +G VN++N+ G +PL A E+ +L E
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 194 GA-AHSKDH 201
GA +KDH
Sbjct: 129 GANPDAKDH 137
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 76
LKE + +L TD TALH A + GH ++V FLL++ + + G + LH A
Sbjct: 22 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA 80
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR----PDPSVLKL 132
A G E+VKAL+ K ++ G T LH A +I + L+ PD
Sbjct: 81 ASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA----- 134
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
+D+ TA+H A KG +++ LL + N + G +PL +A E LL
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 193 AGAA 196
GA+
Sbjct: 194 QGAS 197
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
A G L+ +K + D S RTD+ +TALH A + +IV L+L P + +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 69
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
D+ G + LHIA GR +IV+ LL ++G VN++N+ G +PL A E+ +L E
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 194 GA-AHSKDH 201
GA +KDH
Sbjct: 129 GANPDAKDH 137
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 76
LKE + +L TD TALH A + GH ++V FLL++ + + G + LH A
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA 80
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR----PDPSVLKL 132
A G E+VKAL+ K ++ G T LH A +I + L+ PD
Sbjct: 81 ASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA----- 134
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
+D+ TA+H A KG ++V LL + N + G +PL +A
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
A G LE +K + D S RTD+ +TALH A + +IV L+L P + +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 70
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
D+ G + LHIA GR +IV+ LL +G VN++N+ G +PL A E+ +L E
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 194 GA-AHSKDH 201
GA +KDH
Sbjct: 130 GANPDAKDH 138
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 76
LKE + +L TD TALH A + GH ++V FLL++ + + G + LH A
Sbjct: 23 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA 81
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR----PDPSVLKL 132
A G E+VKAL+ K ++ G T LH A +I + L+ PD
Sbjct: 82 ASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA----- 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
+D+ TA+H A KG +++ LL + N + G +PL +A E LL
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 193 AGAA 196
GA+
Sbjct: 195 QGAS 198
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + N+ G T LH GHLE+++ L+ K + +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNAS 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
DK G T LH+A + +IV L++ V + D +G T LH+A + G +IV LL
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 19 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 78
E+L ++ V +D S T LH AA +GH+++V LL+ +++ + G T LH AA
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAE 122
Query: 79 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
GHLE+V+ L+ + DK G+TA +++ NED+
Sbjct: 123 DGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D T LH GH++++ LL+ +++ + +G T LH AA GHLE+V+
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ D +G T LH+A + + +IV L++ V +D G TA I+I
Sbjct: 99 LLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVRCL 156
G + L
Sbjct: 157 GNEDLAEIL 165
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D G T LH+ V + +I+ L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D G T LH+A +G +IV LL G DVN+++ G +PL +A + G+ E+
Sbjct: 73 V-NASDKSGWTPLHLAAYRGHLEIVEVLLKY-GADVNAMDYQGYTPLHLAAEDGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKYGA 137
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + ++GKT LH AA GHLE+V+ L+
Sbjct: 21 AARAGQDDEVRILM---ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AA 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
DK G T LH+A + +IV E++ + + + D G T LH+A G +IV LL
Sbjct: 77 DKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D S T LH AA +GH+++V LL+ +++ A G T LH AA GHLE+V+
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ K+ + TD G T LH+A + +IV L++ V +D G TA I+I
Sbjct: 99 LL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVRCL 156
G + L
Sbjct: 157 GNEDLAEIL 165
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVLELIRPDP 127
GK +L AAR G + V+ L++ D G+T LH+A +KG E ++E++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLE--IVEVLLKHG 70
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
+ + D G+T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 188 SLLKEAGA 195
+L + GA
Sbjct: 130 EVLLKYGA 137
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G D V L+ ++ A + G+T LH AA +GHLE+V+ L+ D
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDT 66
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G T LH+A + +IV L++ V +D G T L++A G +IV LL G
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK-HG 124
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
DVN+ +K G++ D++ +GN +L +L+
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D G+T LHMA + +IV L+R
Sbjct: 3 GKKLL-EAARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V ++ N G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 61 VNAVDTN-GTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQ 225
+L + HG +A + +T DI D+ ++
Sbjct: 119 VLLK--------HGADVNAQDKFGKTAFDISIDIGNE 147
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVK 86
V D + +T LH AA+ GH+++V LL+ +++ AK A G T L+ AA GHLE+V+
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA--TGITPLYLAAYWGHLEIVE 118
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 119 VLLKHGADVNAQ-DKFGKTAFDISIDIGNEDL 149
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 27 LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 86
LV D ST LH AA +GH +VV +LL + G T + A H+++VK
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 146
L+SK R D + LH A DI E++ L + G++ LHIA +
Sbjct: 129 LLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 147 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+ R V LS + DV NK GE+PL A N++++S L+ + A
Sbjct: 187 ENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL--NSQVWSALQMSKA 232
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSN-----------LAKIARNN----------------- 68
+ LH AA GH+D+ + L++ +N L + A NN
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 69 ----GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
G T LH AA+ GH EVV+ L+S D G T + A + ++ D+V +L+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV-KLLL 131
Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 180
S + + DN+ N LH A G I LL+ + D++++N G+SPL +A +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAAR 186
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 61.6 bits (148), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH AA GH++VV LLE +++ NG+T LH AAR GHLEVVK L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELI 123
+ DK G+T LH+A + + ++V L+
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 68 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 127
NG+T LH AAR GHLEVVK L+ + DK G+T LH+A + + ++V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
V +D G T LH+A + G ++V+ LL
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+T LH+A + + ++V L+ V +D G T LH+A + G ++V+ LL G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
DVN+ +K G +PL +A + G+ E+ LL EAGA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 19 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 78
+LL E V D + T LH AA GH++VV LLE +++ NG+T LH AAR
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77
Query: 79 MGHLEVVKALV 89
GHLEVVK L+
Sbjct: 78 NGHLEVVKLLL 88
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 195
G T LH+A + G ++V+ LL G DVN+ +K G +PL +A + G+ E+ LL EAGA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 196 AHSKD-HGKPP 205
++KD +G+ P
Sbjct: 61 VNAKDKNGRTP 71
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 19 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 56
+LL E V D + T LH AA GH++VV LLE
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
TALH A ++D+V FL+E +N+ + N G LH+AA G+L++ + L+S+ G
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 97 FRTDKKGQTALHMAVKG------QNE----DIVLELIRPDPSVLKLEDNK---------- 136
+ +G T L +A + QNE + +E R + + L D +
Sbjct: 134 A-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 137 ------GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
G TALH+A KG T++++ L+ DVN + G +PL A G E +L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 191 KE 192
E
Sbjct: 252 VE 253
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 71 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 130
V +A G E V L+ + + + G TALH A N D+V L+ ++
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 177
+ DN+G LH A G I L+S +G V ++N G++PLD+
Sbjct: 101 Q-PDNEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDI 145
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP 93
S TALH AAA+G+ +V+ L++ ++ I +G T LH+AA G E + LV ++
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV-ENL 255
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIV 119
+K GQTA +A +EDI+
Sbjct: 256 CDMEAVNKVGQTAFDVA----DEDIL 277
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L+ +N A + ++ G T LH AA GHLE+V+ L+ K+ +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNAD 76
Query: 100 DKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
D G T LH+A +G E V+E++ + + + D+ G T LH+A G +IV LL
Sbjct: 77 DSLGVTPLHLAADRGHLE--VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G DVN+ +K G++ D++ GN +L +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARN--NGKTVLHSAARMGHLEVVKALVSKDPS 94
T LH AA +GH++VV LL+ N A + N NG T LH AA +GHLE+V+ L+
Sbjct: 82 TPLHLAADRGHLEVVEVLLK---NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 95 TGFRTDKKGQTALHMAVKGQNEDI 118
+ DK G+TA +++ NED+
Sbjct: 139 VNAQ-DKFGKTAFDISIDNGNEDL 161
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ +D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIV-EVLLKNGA 71
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
+ +D+ G T LH+A +G ++V LL G DVN+ + G +PL +A +G+ E+
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
A G L+ +K + D S RTD+ +TALH A + +IV L+L P + +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 69
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
D+ G + LHIA G +IV+ LL ++G VN++N+ G +PL A E+ +L E
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 194 GA-AHSKDH 201
GA +KDH
Sbjct: 129 GANPDAKDH 137
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 76
LKE + +L TD TALH A + GH ++V FLL++ + + G + LH A
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA 80
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR----PDPSVLKL 132
A G E+VKAL+ K ++ G T LH A +I + L+ PD
Sbjct: 81 ASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA----- 134
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
+D+ TA+H A KG ++V LL + N + G +PL +A
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 68 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 127
+G T LH+AA+ GH E VK L+SK R+ K G T LH+A K + +IV +L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 166
+ + GNT H+A K G +IV+ LL +G DVN+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 101 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
K G T LH A K + + V +L+ V GNT LH+A K G +IV+ LL+ +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
G DVN+ +K G +P +A+K G+ E+ LL GA
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 195
GNT LH A K G + V+ LLS +G DVN+ +K G +PL +A K G+ E+ LL GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 196 --AHSKDHGKPPSATKQ 210
A SKD P K+
Sbjct: 68 VNARSKDGNTPEHLAKK 84
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 29 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 88
M +T LH AA GH + V LL +++ ++ +G T LH AA+ GH E+VK L
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLL 61
Query: 89 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
++K R+ K G T H+A K + +IV
Sbjct: 62 LAKGADVNARS-KDGNTPEHLAKKNGHHEIV 91
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
+T LH AA GH ++V LL +++ ++ +G T H A + GH E+VK L +K
Sbjct: 43 NTPLHLAAKNGHAEIVKLLLAKGADVNARSK-DGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 96 GFRT 99
R+
Sbjct: 102 NARS 105
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G D V L+ +++ + N G T LH AA GHLE+V+ L+ K + D
Sbjct: 21 AARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLL-KHGADVDAADV 78
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G T LH+A + +IV L++ V D G+T LH+A +G +IV LL G
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLKY-G 136
Query: 162 IDVNSLNKAGESPLDVAEKLGNTEL 186
DVN+ +K G++ D++ GN +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D + T LH AA GH+++V LL+ +++ A G T LH AA GHLE+V+
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ D G T LH+A + +IV L++ V +D G TA I+I
Sbjct: 99 LLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVR 154
G + +
Sbjct: 157 GNEDLAK 163
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D G T LH+A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 V-DAADVYGFTPLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKYGA 137
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 15 LVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
L + E+L ++ V D++ ST LH AA +GH+++V LL+ +++
Sbjct: 93 LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 37/165 (22%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V TD S T LH AA GH+++V LL+ +++ I G T LH AA +GHLE+V+
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX-GSTPLHLAALIGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ G + + V D G+T LH+A
Sbjct: 99 LLKH---------------------GADVNAV--------------DTWGDTPLHLAAIM 123
Query: 148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G +IV LL G DVN+ +K G++ D++ GN +L +L++
Sbjct: 124 GHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ TD G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V + D G+T LH+A G +IV LL G DVN+++ G++PL +A +G+ E+
Sbjct: 73 VNAI-DIXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 41/167 (24%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
V TD S T LH AA GH+++V LL+ D N I G T LH AA +GHLE+V
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM---GSTPLHLAALIGHLEIV 96
Query: 86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
+ L+ G + + V D G+T LH+A
Sbjct: 97 EVLLKH---------------------GADVNAV--------------DTWGDTPLHLAA 121
Query: 146 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
G +IV LL G DVN+ +K G++ D++ GN +L +L++
Sbjct: 122 IMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ TD G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V + D G+T LH+A G +IV LL G DVN+++ G++PL +A +G+ E+
Sbjct: 73 VNAI-DIMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
+L + HG +A + +T DI D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AAA G D V L+ +++ +NG T LH AA G LE+V+ L+ K+ + +D
Sbjct: 13 AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDS 70
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G T LH+A + +IV L++ V D G T LH+A G+ +IV LL G
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
DVN+ + G + D++ G +L +L+
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V TD + T LH AAA G +++V LL+ +++ + + G T LH AA GHLE+V+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEV 90
Query: 88 LVSKDPSTGFRTDKKGQTALHM-AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 146
L+ D+ G T LH+ A+ GQ E ++E++ + + +D G TA I+I
Sbjct: 91 LLKHGADVN-AYDRAGWTPLHLAALSGQLE--IVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 147 KGRTQIVRCL 156
+G+ + L
Sbjct: 148 QGQEDLAEIL 157
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDP 127
GK +L +AA G + V+ L++ TD G T LH+A GQ E ++E++ +
Sbjct: 7 GKKLLEAAA-AGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLE--IVEVLLKNG 62
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
+ + D+ G T LH+A G +IV LL G DVN+ ++AG +PL +A G E+
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIV 121
Query: 188 SLLKEAGA 195
+L + GA
Sbjct: 122 EVLLKHGA 129
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D+KG T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V DN G+T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NAHDNDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D +T LH AA H+++V LL+ +++ N+G T LH AA GHLE+V+
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 99 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + D KGNT LH+A +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 218
DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 119
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNLAKIARNNGKTVL 73
++ELL P+L++ D LH + + Q H ++ +FLL + NL ++G T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 74 HSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
H A +G+LEVVK+L + + +G T LH+AV + ++ LI SV ++
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGNTELFSLL 190
+D LH A G +++ L + VN +K G +PL +AE G+ + L+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL-LV 194
Query: 191 KEAGAAHS 198
++ GA +
Sbjct: 195 EKYGAEYD 202
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH A + +V FL+E +++ +I + LH AA +G L++++ L S
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
DK+G T L A+ + D + L+ + L DNKG A +A+ +
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVL 130
LH A V+ L+ PS + D+ G+ LH +V Q +I L+ + ++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIE-GIDVNSLNKAGESPLDVAEKLGNTELFSL 189
D+ G T HIA G ++V+ L D+N + G + L +A E+
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 190 LKEAGAA 196
L E GA+
Sbjct: 126 LIENGAS 132
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNLAKIARNNGKTVL 73
++ELL P+L++ D LH + + Q H ++ +FLL + NL ++G T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 74 HSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
H A +G+LEVVK+L + + +G T LH+AV + ++ LI SV ++
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGNTELFSLL 190
+D LH A G +++ L + VN +K G +PL +AE G+ + L+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL-LV 194
Query: 191 KEAGAAHS 198
++ GA +
Sbjct: 195 EKYGAEYD 202
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH A + +V FL+E +++ +I + LH AA +G L++++ L S
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
DK+G T L A+ + D + L+ + L DNKG A +A+ +
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVL 130
LH A V+ L+ PS + D+ G+ LH +V Q +I L+ + ++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIE-GIDVNSLNKAGESPLDVAEKLGNTELFSL 189
D+ G T HIA G ++V+ L D+N + G + L +A E+
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 190 LKEAGAA 196
L E GA+
Sbjct: 126 LIENGAS 132
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNLAKIARNNGKTVL 73
++ELL P+L++ D LH + + Q H ++ +FLL + NL ++G T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 74 HSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
H A +G+LEVVK+L + + +G T LH+AV + ++ LI SV ++
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGNTELFSLL 190
+D LH A G +++ L + VN +K G +PL +AE G+ + L+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL-LV 194
Query: 191 KEAGAAHS 198
++ GA +
Sbjct: 195 EKYGAEYD 202
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH A + +V FL+E +++ +I + LH AA +G L++++ L S
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
DK+G T L A+ + D + L+ + L DNKG A +A+ +
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVL 130
LH A V+ L+ PS + D+ G+ LH +V Q +I L+ + ++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIE-GIDVNSLNKAGESPLDVAEKLGNTELFSL 189
D+ G T HIA G ++V+ L D+N + G + L +A E+
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 190 LKEAGAA 196
L E GA+
Sbjct: 126 LIENGAS 132
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
G T LH AA GHLE+V+ L+ K+ + D G T L +A + +IV E++ + +
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIV-EVLLKNGA 104
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
+ D +G+T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 189 LLKE 192
+L++
Sbjct: 164 ILQK 167
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D S T LH AA GH+++V LL+ +++ + + G T L AA GHLE+V+
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
L+ K+ + D +G T LH+A + +IV E++ + + + +D G TA I+I
Sbjct: 99 LL-KNGADVNANDMEGHTPLHLAAMFGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 148 GRTQIVRCL 156
G + L
Sbjct: 157 GNEDLAEIL 165
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V + D+ G T L +A G +IV LL G DVN+ + G +PL +A G+ E+
Sbjct: 73 VNAV-DHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 189 LLKEAGA 195
+L + GA
Sbjct: 131 VLLKNGA 137
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
L +AAA+G ++ + LL+ + G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 20 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 79
L G P+L D + + +H AA G +D + LLE +++ I N G LH AA+
Sbjct: 58 LRGANPDL---KDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKE 113
Query: 80 GHLEVVKALVSKDPSTGFRTDKKGQTALHMA-VKGQNEDIVL 120
GHL VV+ LV S + KG TA +A + G+NE + L
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
L +AAA+G ++ + LL+ + G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ D+ G T LH+A + + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V EDN G T LH+A +G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D T LH AA GH+++V LL+ +++ N G T LH AA GHLE+V+
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 99 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + D G T LH+A + G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY-GA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
DVN+ + G +PL +A G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 93
S ++H AAQG +D + L NL G T L A+ G +E V+ L+ DP
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
K+ ++AL +A G DIV L+ D + + D G T L A++ + V
Sbjct: 63 HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCV 118
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
LL+ G D+ + +G +P+D+A LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 76
LKE L + NLV D T L A+A G I+ V FLLE ++ +A+ ++ L A
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALSLA 76
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 136
+ G+ ++V L+ +D D G T L AV+G + V E + + L E +
Sbjct: 77 STGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCV-EALLARGADLTTEADS 134
Query: 137 GNTALHIAIKKGRTQI 152
G T + +A+ G ++
Sbjct: 135 GYTPMDLAVALGYRKV 150
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
L +AAA+G ++ + LL+ + G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 23 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 82
EF V D + LH AA +GH+ VV FL++ ++ + G T A G
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 83 EVV 85
EVV
Sbjct: 151 EVV 153
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
L +AAA+G ++ + LL+ + G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
L +AAA+G ++ + LL+ + G+T L ++G+ E+ + L+ + + +
Sbjct: 9 LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
D+ G +H A + D + L+ V +EDN+GN LH+A K+G ++V L+
Sbjct: 67 -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
+V N G++ D+A G E+ SL++ GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
V D + T LH AA +GH+++V LL+ D N + I G+T LH AA +GHLE+V
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIV 96
Query: 86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
+ L+ + DK G+TA +++ NED+
Sbjct: 97 EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L A R G + V+ L++ D G T LH+A K + +IV L++
Sbjct: 15 GKKLL-EATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 93
S ++H AAQG +D + L NL G T L A+ G +E V+ L+ DP
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
K+ ++AL +A G DIV L+ D + + D G T L A+ + V
Sbjct: 63 HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCV 118
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
LL+ G D+ + +G +P+D+A LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 17 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 76
LKE L + NLV D T L A+A G I+ V FLLE ++ +A+ ++ L A
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALSLA 76
Query: 77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 136
+ G+ ++V L+ +D D G T L AV G + V E + + L E +
Sbjct: 77 STGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVHGNHVKCV-EALLARGADLTTEADS 134
Query: 137 GNTALHIAIKKGRTQIVRCL 156
G T + +A+ G ++ + +
Sbjct: 135 GYTPMDLAVALGYRKVQQVI 154
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D + T LH AA +GH+++V LL+ +++ + + G+T LH AA +GHLE+V+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 99 LLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L A R G + V+ L++ D G T LH+A K + +IV L++
Sbjct: 15 GKKLL-EATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D+ G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
V D + T LH AA +GH+++V LL+ D N I G+T LH AA +GHLE+V
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW---GRTPLHLAATVGHLEIV 96
Query: 86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
+ L+ + DK G+TA +++ NED+
Sbjct: 97 EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L A R G + V+ L++ D G T LH+A K + +IV L++
Sbjct: 15 GKKLL-EATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V D G T LH+A G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 V-NARDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L GQ++++ ++ + + + D+ G T LH+A K+G +IV LL G
Sbjct: 15 GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
DVN+ + G +PL +A +G+ E+ +L E GA
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 32 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK---IARNNGKTVLHSAARMGHLEVVKAL 88
D T LH A QG++ V+ L+ + + I N +T LH A VV+ L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 89 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLE--DNKGNTALHIAI 145
V+ S D+ GQTA H+A + ++ + L+ P L LE + G TALH+A+
Sbjct: 66 VTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 146 KKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 195
+ V+ LL G D+++++ K+G SPL A + + + LL + GA
Sbjct: 125 NTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 5/165 (3%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH A VV L+ ++ + R+ G+T H A ++AL+
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 97 FRTDKK---GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
+ + G TALH+AV + ++ V L+ + ++ G + L A++ +V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 198
+ LL G +VN+ +G S L A G L L +GA S
Sbjct: 167 QLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 98 RTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
R D+ G T LH+AV N V + L + L + +N T LH+A+ +VR
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 155 CLLSIEGIDVNSLNKAGESPLDVA-EKLGNTELFSLLKEA 193
LL G +L++ G++ +A E T L +LL A
Sbjct: 64 -LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D T LH AA GH+++V LL+ +++ N G+T LH AA HLE+V+
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEV 98
Query: 88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
L+ + DK G+TA +++ NED+
Sbjct: 99 LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
AA G D V L +N A + N+ G T LH AA +GHLE+V+ L+ K+ + T
Sbjct: 21 AARAGQDDEVRILT---ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNAT 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
G+T LH+A + +IV L++ V +D G TA I+I G + L
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L + D G T LH+A + +IV E++ + +
Sbjct: 15 GKKLL-EAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
+ N G T LH+A +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + D G+T LH+A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
DVN+ G +PL +A + E+ +L + HG +A + +T DI D
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 32 DLSCSTALHTAAAQGHIDVVNFLLEIDS-----NLAKIARNNGKTVLHSAARMGHLEVVK 86
D +T LH A QG + V L + + ++ K NG T LH A+ G+L +V+
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
LVS + G+TALH+AV QN D+V L++
Sbjct: 132 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 65/164 (39%), Gaps = 8/164 (4%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V++++ G+ L +L T LH A ++ LL + ++ G T LH
Sbjct: 24 VIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHL 81
Query: 76 AARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 130
A G L V L + T+ G T LH+A IV L+ V
Sbjct: 82 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 174
E G TALH+A+ +V LL G DVN + G SP
Sbjct: 142 AQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSP 184
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSAAR 78
V D TA AA G + + FL + +N+ + R G T L AA
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 79 MGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLEDN 135
GH+EV+K L+ + + D G+ AL H + + D+ + L+ + + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+G T L +A++K +V+ LL E I++N + G++ L +A +L ++ LL + GA
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Query: 196 A 196
+
Sbjct: 278 S 278
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 139
+++V+ L+ + F+ ++ G T LH AV+ EDIV L+R DP + K G T
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK---KNGAT 74
Query: 140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+A G ++++ LS +G DVN + G + A G + L + GA
Sbjct: 75 PFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSAAR 78
V D TA AA G + + FL + +N+ + R G T L AA
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 79 MGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLEDN 135
GH+EV+K L+ + + D G+ AL H + + D+ + L+ + + +
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+G T L +A++K +V+ LL E I++N + G++ L +A +L ++ LL + GA
Sbjct: 238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297
Query: 196 A 196
+
Sbjct: 298 S 298
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNT 139
+++V+ L+ + F+ ++ G T LH AV+ EDIV L+R DP + K G T
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK---KNGAT 94
Query: 140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+A G ++++ LS +G DVN + G + A G + L + GA
Sbjct: 95 PFILAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
S+G R + L AV+ ++ D+V +L+ +V E+ G T LH A++ R IV
Sbjct: 16 SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 75
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
LL G D K G +P +A G+ +L L GA
Sbjct: 76 ELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T L A G D VN LL+ +++ ++ + +H AAR GH+E V +L++ +
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNID 128
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
+ G T L++A + Q V +L+ S + KG + A+ + ++ + CL
Sbjct: 129 HKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPLHAVARTASEELACL 184
Query: 157 LSIEGIDVNSLNKAGESPLDV 177
L G D + N G+ P+++
Sbjct: 185 LMDFGADTQAKNAEGKRPVEL 205
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 32 DLSCSTALHTAAAQGHIDVVNFLLEIDS-----NLAKIARNNGKTVLHSAARMGHLEVVK 86
D +T LH A QG + V L + + ++ K NG T LH A+ G+L +V+
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
LVS + G+TALH+AV QN D+V L++
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 65/164 (39%), Gaps = 8/164 (4%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V++++ G+ L +L T LH A ++ LL + ++ G T LH
Sbjct: 27 VIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHL 84
Query: 76 AARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 130
A G L V L + T+ G T LH+A IV L+ V
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 174
E G TALH+A+ +V LL G DVN + G SP
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSP 187
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ DK G T LH+A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V + D G T LH+ G +IV LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 VNAI-DAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T LH AA H+++V LL+ +++ I G+T LH A GHLE+V+ L+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAI-GETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 97 FRTDKKGQTALHMAVKGQNEDI 118
+ DK G+TA +++ NED+
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDL 128
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + ED G T LH+A +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
DVN+++ GE+PL + G+ E+ +L + HG +A + +T DI D
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 131
LH AA+ G+L ++ + D G DK G TAL+ A G ++DIV E + P++
Sbjct: 77 LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 132 LEDNK-GNTALHIAIKKGRTQIVRCLLS 158
+ NK G+TALH A KG IV+ LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 26 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 85
N V S LH AA +G++ + L+ + + + G T L+ A GH ++V
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIV 122
Query: 86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
+ L ++ + +K G TALH A DIV
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
DPS L +++G TALH A+ G T+IV+ L+ G++VN+ + G +PL A N +
Sbjct: 62 DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 186 LFSLLKEAGAA 196
+ L E+GAA
Sbjct: 118 VCKFLVESGAA 128
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 89
TALH A GH ++V FL++ N+ A ++G T LH AA +++V K LV
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 39 LHTAAAQGHIDVVN-FLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 97
L ++ +G D+V + E+D + + G T LH+A GH E+VK LV +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN- 97
Query: 98 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA--IKKGRTQIVRC 155
D G T LH A N + L+ +V + + TA +++G TQ +
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 156 LLSIE 160
L ++
Sbjct: 158 LYGVQ 162
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
DPS L +++G TALH A+ G T+IV+ L+ G++VN+ + G +PL A N +
Sbjct: 62 DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 186 LFSLLKEAGAA 196
+ L E+GAA
Sbjct: 118 VCKFLVESGAA 128
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
TALH A GH ++V FL++ N+ A ++G T LH AA +++V K LV
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 39 LHTAAAQGHIDVVN-FLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 97
L ++ +G D+V + E+D + + G T LH+A GH E+VK LV +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN- 97
Query: 98 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA--IKKGRTQIVRC 155
D G T LH A N + L+ +V + + TA +++G TQ +
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 156 LLSIE 160
L ++
Sbjct: 158 LYGVQ 162
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
TAL T Q I+ V L + N+ A G+T L A G ++VVKAL++ +
Sbjct: 152 TALATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN 210
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
+ D G TAL A + +++I L+ + L D G+TAL +A+ G+++I L
Sbjct: 211 VQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Query: 157 LS 158
S
Sbjct: 270 YS 271
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 63 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA----VKGQNE-D 117
IA +NG T LH + + VV+ L+ + ++ G + + + +K Q++ +
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIE 164
Query: 118 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 177
VL+L R ++ G TAL +A+ GR +V+ LL+ E DVN + G + L
Sbjct: 165 TVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTALMC 222
Query: 178 AEKLGNTELFSLL 190
A + G+ E+ LL
Sbjct: 223 ACEHGHKEIAGLL 235
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 175
V+ + D+ GNTALH ++ +V+ LL V+ N+AG SP+
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI 149
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
STAL A GH ++ LL + S + +G T L A G E+ L S+
Sbjct: 217 STALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T L A G D VN LL+ +++ ++ + +H AAR GH+E V +L++ +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNID 184
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRC 155
+ G T L++A + Q V +L+ S + KG ++ LH ++ ++ C
Sbjct: 185 HKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPLHAVVRTASEELA-C 239
Query: 156 LLSIEGIDVNSLNKAGESPLDV 177
LL G D + N G+ P+++
Sbjct: 240 LLMDFGADTQAKNAEGKRPVEL 261
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G ++ V L + S + T LH AA + VV+ L+ + DK
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 73
Query: 102 KGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
G LH A G E V EL+ +V+ + D T LH A KG+ +I + LL
Sbjct: 74 GGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-H 130
Query: 161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
G D N+ G +PLD+ K G+T++ LL+
Sbjct: 131 GADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
+ + +T LH A R +V LL G DV++ +K G PL A G+ E+ LL +
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 194 GA 195
GA
Sbjct: 98 GA 99
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 42 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
AA G ++ V L + S + T LH AA + VV+ L+ + DK
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 75
Query: 102 KGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
G LH A G E V EL+ +V+ + D T LH A KG+ +I + LL
Sbjct: 76 GGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-H 132
Query: 161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
G D N+ G +PLD+ K G+T++ LL+
Sbjct: 133 GADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
+ + +T LH A R +V LL G DV++ +K G PL A G+ E+ LL +
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 194 GA 195
GA
Sbjct: 100 GA 101
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
G + LH AA+ GH + L+ S RT K +T LHMA + +IV L++
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V +D TALH A + ++V L+ G DV++ +K ++ D++ GN +L
Sbjct: 93 V-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 189 LLK 191
+L+
Sbjct: 151 ILQ 153
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKAL 88
TTD ++ LH AA GH LL + +++ AR +T LH AA GH +V+ L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 89 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 148
+ + D TALH A + ++++V LI+ V + TA I+I G
Sbjct: 87 LKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNG 144
Query: 149 RTQIVRCL 156
+ L
Sbjct: 145 NEDLAEIL 152
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G T LH+A ++G +IV LL G
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
DVN+ +K G++ D++ GN +L +L++A
Sbjct: 60 DVNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTG 96
L AA G D V L+ +N A + A++ +G T LH AAR GHLE+V+ L+
Sbjct: 6 LLEAARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 97 FRTDKKGQTALHMAVKGQNEDIV 119
+ DK G+TA +++ NED+
Sbjct: 63 AQ-DKFGKTAFDISIDNGNEDLA 84
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
A + G+ VR L++ G DVN+ +K G +PL +A + G+ E+ +L +AGA
Sbjct: 9 AARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 40/157 (25%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 94
ST LH AA + VV +LL+ +++ A++ G V LH+A GH EV + LV
Sbjct: 47 STPLHFAAGYNRVSVVEYLLQHGADVH--AKDKGGLVPLHNACSYGHYEVAELLV----- 99
Query: 95 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
K G +V+ + D T LH A KG+ +I +
Sbjct: 100 ------KHG------------------------AVVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
LL G D N+ G +PLD+ K G+T++ LL+
Sbjct: 130 LLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
+ + +T LH A R +V LL G DV++ +K G PL A G+ E+ LL +
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 194 GA 195
GA
Sbjct: 102 GA 103
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 29 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 86
M +DL L AA G D V L+ +N A +A NG T LH AAR GHLEVVK
Sbjct: 2 MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
L+ + DK G+TA +++ NED+
Sbjct: 57 LLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLA 88
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G+T LH+A + G ++V+ LL G
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLK 191
DVN+ +K G++ D++ GN +L +L+
Sbjct: 64 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
A + G+ VR L++ G DV + +K G +PL +A + G+ E+ LL EAGA
Sbjct: 13 AARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ + DK G T LH+A + + ++V L+
Sbjct: 7 GKKLL-EAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCL 156
V +D G TA I+I G + L
Sbjct: 65 V-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLE 56
V D + ST LH AA GH++VV LLE
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 29 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 86
M +DL L AA G D V L+ +N A +A NG T LH AAR GHLEVVK
Sbjct: 20 MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
L+ + DK G+TA +++ NED+
Sbjct: 75 LLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G+T LH+A + G ++V+ LL G
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 81
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLK 191
DV + +K G++ D++ GN +L +L+
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
A + G+ VR L++ G DV + +K G +PL +A + G+ E+ LL EAGA
Sbjct: 31 AARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ + DK G T LH+A + + ++V L+
Sbjct: 25 GKKLLE-AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCL 156
V +D G TA I+I G + L
Sbjct: 83 VXA-QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
V D + ST LH AA GH++VV LLE +++
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
A+ + + LL D+++ G +PL +A +L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHA 61
Query: 76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD- 120
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 121 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVL 174
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 23 EFPNL-VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMG 80
+FP L + +D +H AA +G D V L+E + ++ +N G T LH A + G
Sbjct: 7 DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFG 64
Query: 81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--------PDPSVLKL 132
++ K L S + GQ +H+AV D+V+ L+ P+ S+L
Sbjct: 65 CVDTAKYLAS---VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPE-SLLNE 120
Query: 133 EDN-------------KGNTALHIAIKKGRT--QIVRCLLSIEGIDVNSLNKAGESPLDV 177
D KG TALH + G + ++ L+ + G + +KA E+PL
Sbjct: 121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQL-GASPTAKDKADETPLXR 179
Query: 178 AEKLGNTELFSL 189
A + N E L
Sbjct: 180 AXEFRNREALDL 191
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
D++ +H+A +KG+T VR L+ G+ N+ G + L +A K G + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 194 GAAHSKDHGKPP 205
G HS HG+ P
Sbjct: 76 GEVHSLWHGQKP 87
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
A+ + + L+ D+++ G +PL +A +L
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 64
Query: 76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 123
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 177
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 93
TALH A H ++FLL + + N G+T LH AA +G V+ L +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 128
++ G TALH+A + + L++P PS
Sbjct: 70 GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 129 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 167
L+ E+ G+T LH+A+ ++VR LL G D+N
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 168 NK-AGESPLDVAEKLGNTELFSLLKEAGA 195
G +PL +A + + LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G T LH+AV ++ ++V L + K E G T LH+A++ ++ LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 203
D + G +PL A N L LL+ GA +D G
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 96 GFRTDKKGQTALHMAVKGQNEDIVLELI--RPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
G+ T + G TALH+AV Q+E + L+ L L+++ G TALH+A G V
Sbjct: 3 GYVT-EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
L + G V + G + L +A ++ +L + +H +D
Sbjct: 62 EKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 93
TALH A H ++FLL + + N G+T LH AA +G V+ L +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 128
++ G TALH+A + + L++P PS
Sbjct: 70 GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 129 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 167
L+ E+ G+T LH+A+ ++VR LL G D+N
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 168 NK-AGESPLDVAEKLGNTELFSLLKEAGA 195
G +PL +A + + LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
G T LH+AV ++ ++V L + K E G T LH+A++ ++ LL G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 203
D + G +PL A N L LL+ GA +D G
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 96 GFRTDKKGQTALHMAVKGQNEDIVLELI--RPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
G+ T + G TALH+AV Q+E + L+ L L+++ G TALH+A G V
Sbjct: 3 GYVT-EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
L + G V + G + L +A ++ +L + +H +D
Sbjct: 62 EKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 99 TDKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
T+ +G+T LH+A +KG + E + + S ++D+ G T LH A G ++V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 198
+ + VN+ +SPL A K G+ ++ LL GA+ +
Sbjct: 64 QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP--- 93
T LH A+ +G I V +LL+ S+ + + G T LH A GHL+VV+ L+
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 94 STGFRTDKKGQTALHMAVKGQNEDIVLELI 123
+TG++ D + LH A K + DIV L+
Sbjct: 71 TTGYQND----SPLHDAAKNGHVDIVKLLL 96
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 67 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
+ G+T+LH A+ G + V+ L+ DP+ D G T LH A + +V EL+
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVV-ELLL 63
Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 179
+++ + ++ LH A K G IV+ LLS G N++N G P+D +
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTD 117
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 22 GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 81
G PN+ D + T LH A GH+ VV LL+ + + N + LH AA+ GH
Sbjct: 33 GSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN-DSPLHDAAKNGH 88
Query: 82 LEVVKALVS 90
+++VK L+S
Sbjct: 89 VDIVKLLLS 97
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 15 LVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL 55
L + ELL + LV TT + LH AA GH+D+V LL
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
A+ + + L+ D+++ G +PL +A +L
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D +G TAL AVK I +L+ +V +D G T L +I G +++ LL
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE- 122
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
G +VN N GE+PL VA K G +E+ L E GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 131 KLEDN--KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
KLED +G+TAL A+K R I LLS +G +VN+ + +G++PL + G +E+
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 189 LLKEAGA 195
L E GA
Sbjct: 119 FLLEHGA 125
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
V+ + + S +TD+ G+TALH+A + D L+ ++DN G T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
A+ + + L+ D+++ G +PL +A +L
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V+ + + + +L TD + TALH AA D LLE ++ A I N G+T LH+
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 97
Query: 76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 156
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 157 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 210
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 26/181 (14%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNN----GKTVLHSAARMGHLEVVKALVSKD 92
TALH AA +++ L+E L + G+T LH A ++ +V+AL+++
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 93 PSTGFRTDKK------------GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 140
S R G+ L A +E+IV LI + + +D+ GNT
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTV 157
Query: 141 LHIAI----KKGRTQIVRCLLSIEGID-VNSL----NKAGESPLDVAEKLGNTELFSLLK 191
LHI I K Q+ LLS +G D + SL N G +P +A GN +F L
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Query: 192 E 192
+
Sbjct: 218 Q 218
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK----KGQTALHMAVKGQNEDIVLELIR 124
G+T LH AA +LE L+ P F +GQTALH+AV QN ++V L
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL-- 94
Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
+ +G + R S+ ++L GE PL A +G+
Sbjct: 95 --------------------LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 185 ELFSLLKEAGA 195
E+ LL E GA
Sbjct: 135 EIVRLLIEHGA 145
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
L AA G ++ V+ L+ ++ ++ G+TAL + + G + + LEL++ S +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 69
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
+D G + +H A + G ++ L+ G DVN+L+ G P+ +A + G++ + S L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 193 AGAAHSKD 200
H +D
Sbjct: 129 ESDLHHRD 136
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 87 ALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
AL DPS T + + L A + NE+ ++ L+ P D + +T LH+A
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 146 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
R +IV+ LL G DV++ +K G PL A G+ E+ LL + GA
Sbjct: 67 GYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDPS 94
T LH AA + H DV+ L + + + + + G+T LH AA GHL+ + L+S DPS
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 95 ----TGFRTDKKGQTAL 107
GF + G A+
Sbjct: 308 IISLQGFTAAQMGNEAV 324
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 70 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 129
K L AAR G+ E + AL++ +D + T LH+A G N +++L+ +
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA-GYNRVRIVQLLLQHGAD 83
Query: 130 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 189
+ +D G LH A G ++ LL G VN+++ +PL A E+ SL
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 190 LKEAGA 195
L GA
Sbjct: 143 LLSHGA 148
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
+K T LH+A + + D V+E++ + + D+ G TALH A G Q R LLS
Sbjct: 244 NKDFMTPLHVAAERAHND-VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
G D + ++ G + A ++GN + +L E+ + D
Sbjct: 303 -GSDPSIISLQGFT----AAQMGNEAVQQILSESTPMRTSD 338
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 30/202 (14%)
Query: 19 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL----- 73
ELL + V DL T LH AA++ ++V + LL ++ + +GK+ +
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPT 166
Query: 74 -------------HS---AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG---Q 114
HS AAR L VK ++ + F+ + +TALH AV +
Sbjct: 167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPK 225
Query: 115 NEDIVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES 173
+ + L+R +V E NK T LH+A ++ ++ +L G +N+L+ G++
Sbjct: 226 RKQVAELLLRKGANV--NEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQT 282
Query: 174 PLDVAEKLGNTELFSLLKEAGA 195
L A G+ + LL G+
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGS 304
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALV 89
+D ST LH AA + +V LL+ +++ A++ G V LH+A GH EV + L+
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH--AKDKGGLVPLHNACSYGHYEVTELLL 111
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
L AA G ++ V+ L+ ++ ++ G+TAL + + G + + LEL++ S +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 71
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
+D G + +H A + G ++ L+ G DVN+L+ G P+ +A + G++ + S L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 193 AGAAHSKD 200
H +D
Sbjct: 131 ESDLHHRD 138
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
GK +L AAR G + V+ L++ + D+ G T L++A + +IV L++
Sbjct: 15 GKKLL-EAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
V + D G T LH+A G +I LL G DVN+ +K G++ D++ GN +L
Sbjct: 73 VNAV-DAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 189 LLKE 192
+L++
Sbjct: 131 ILQK 134
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
G+ L A GQ++++ ++ + + + +D G T L++A G +IV LL G
Sbjct: 15 GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 218
DVN+++ G +PL +A +G+ E+ +L + HG +A + +T DI
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLK--------HGADVNAQDKFGKTAFDI 119
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 62 AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 119
A+ AR N +L AA G LEVV+ V + DPS + +++G TALH A+ G N IV
Sbjct: 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIV 70
Query: 120 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
LI +V D+ G T LH A T I L+
Sbjct: 71 DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALV 107
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
TALH A + +V+FL+ +N+ ++G T LH AA + ALV +
Sbjct: 56 TALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114
Query: 97 FRTDKKGQTAL 107
T G TA
Sbjct: 115 ATTLSDGATAF 125
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
V+ + + + +L TD + +TALH AAA D LLE ++ A I N G+T LH+
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
A V + L+ + G T L +A + E ++ +LI V ++D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
G +ALH A LL G + + N E+PL +A + G+ E +L
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 11/150 (7%)
Query: 14 ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE-IDSNLAKIARNNGKTV 72
I + K L+ ++ + +S S L+ A AQG +++ ++L+ +L K R G +
Sbjct: 52 IEIAKALIDRGADINLQNSISDSPYLY-AGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110
Query: 73 LHSAARMGHLEVVKALVSKD-PSTGFRTDKKGQTALHMAV---KGQN--EDIVLELIRPD 126
+ AA GH++ VK L+ F+ D G TAL AV +G +DIV +L+ +
Sbjct: 111 I-PAAEKGHIDNVKLLLEDGREDIDFQNDF-GYTALIEAVGLREGNQLYQDIV-KLLMEN 167
Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
+ ++DN G TA+ A +KG T+I + L
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKE 192
D +GNT L+IA+ +I + L+ G D+N N +SP A G TE+ + +LK
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 193 A 193
A
Sbjct: 95 A 95
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
G T L+ A +E+ KAL+ + + L+ +G+ E + L P
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGN--- 183
+ K + G AL A +KG V+ LL D++ N G + L V + GN
Sbjct: 99 LNK-HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 184 TELFSLLKEAGAAHS 198
++ LL E GA S
Sbjct: 158 QDIVKLLMENGADQS 172
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 34 SCSTALHTAAAQGHIDVVNFLL---EIDSNLAKIARNNGKTVL----HSAARMGHLEVVK 86
S +ALH AAA + L ++ ++ ++ RN G T L H+ R + K
Sbjct: 198 SERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRN-GXTALXIVAHNEGR-DQVASAK 255
Query: 87 ALVSK----DPSTGFRTDK---KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT 139
LV K D R D KG+TALH A + N IV L+ S +D G T
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKT 315
Query: 140 ALHIAIKKGRTQIVRCLL----SIEGIDV 164
+ +A ++GR ++V L+ S+E +D
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQGASVEAVDA 344
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 100 DKKGQTALHMAVKGQNEDIVLEL---------IRPDPSVLK-LEDNKGNTALHIAIKKGR 149
D+ G TAL + + D V + D + K E KG TALH A +
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
IV+ L+ +G + + ++ G++P+ +A + G E+ L + GA+
Sbjct: 292 XPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 93 PSTGFRTDKKGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 150
P G + LH+AVK N+ +++ I + L + GNTALH A +
Sbjct: 161 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP 220
Query: 151 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
++ LL + V ++N+AGE+ LD+A K + E LL++A A
Sbjct: 221 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 93 PSTGFRTDKKGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 150
P G + LH+AVK N+ +++ I + L + GNTALH A +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP 239
Query: 151 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
++ LL + V ++N+AGE+ LD+A K + E LL++A A
Sbjct: 240 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
L AA G ++ V+ L+ ++ ++ G+TAL + + G I LEL++ S +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASP-NV 69
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
+D G + +H A + G ++ L+ G DVN + G P+ +A + G+T + S L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 193 AGAAHSKD 200
H +D
Sbjct: 129 ESDLHRRD 136
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
L AA G ++ V+ L+ ++ ++ G+TAL + + G I LEL++ S +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASP-NV 63
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
+D G + +H A + G ++ L+ G DVN + G P+ +A + G+T + S L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 193 AGAAHSKD 200
H +D
Sbjct: 123 ESDLHRRD 130
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 104 QTALHMAVKGQNEDI--VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
+TALH+AV+ + +++ + + L + KG+TALH + ++ LL +
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
+ N++GE+PLD+A++L + LL +A
Sbjct: 230 -SIEIANESGETPLDIAKRLKHEHCEELLTQA 260
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 98 RTDKKGQTALHMAVKGQNEDIVLELI---RPDPSVLKLEDNKG-NTALHIAIKKGRTQIV 153
TD++G T L M + V+E + DP +L KG +AL +A KG T IV
Sbjct: 47 HTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIV 101
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+ LL G+DVN + G +PL A + + +L E+GA
Sbjct: 102 KMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 23 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 82
E N++ TD T L AAA G I VV FLL+ ++ + + ++ L A G+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYT 98
Query: 83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTA 140
++VK L+ D G T L AV G + V L+ DP++ E + G +
Sbjct: 99 DIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYNS 154
Query: 141 LHIAIKKGRTQIVRCLLS 158
+ +A+ G + + + S
Sbjct: 155 MDLAVALGYRSVQQVIES 172
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 98 RTDKKGQTALHMAVKGQNEDIVLELI---RPDPSVLKLEDNKG-NTALHIAIKKGRTQIV 153
TD++G T L M + V+E + DP +L KG +AL +A KG T IV
Sbjct: 29 HTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIV 83
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+ LL G+DVN + G +PL A + + +L E+GA
Sbjct: 84 KMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 23 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 82
E N++ TD T L AAA G I VV FLL+ ++ + + ++ L A G+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYT 80
Query: 83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTA 140
++VK L+ D G T L AV G + V L+ DP++ E + G +
Sbjct: 81 DIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYNS 136
Query: 141 LHIAIKKGRTQIVRCLLS 158
+ +A+ G + + + S
Sbjct: 137 MDLAVALGYRSVQQVIES 154
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 98 RTDKKGQTALHMAVKGQNEDIVLELI---RPDPSVLKLEDNKG-NTALHIAIKKGRTQIV 153
TD++G T L M + V+E + DP +L KG +AL +A KG T IV
Sbjct: 31 HTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQLL----GKGRESALSLACSKGYTDIV 85
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+ LL G+DVN + G +PL A + + +L E+GA
Sbjct: 86 KMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 23 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 82
E N++ TD T L AAA G I VV FLL+ ++ + + ++ L A G+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR-ESALSLACSKGYT 82
Query: 83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTA 140
++VK L+ D G T L AV G + V L+ DP++ E + G +
Sbjct: 83 DIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYNS 138
Query: 141 LHIAIKKGRTQIVRCLLS 158
+ +A+ G + + + S
Sbjct: 139 MDLAVALGYRSVQQVIES 156
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 25 PNLVMTTDL--SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 82
P+ + D+ T TAA + ++ LLE D ++ + NG+T L A +G
Sbjct: 33 PSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSD 90
Query: 83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 142
+ V+ L R + G TALHMA ++V L+ + ++ED +G TAL
Sbjct: 91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALE 149
Query: 143 IA 144
+A
Sbjct: 150 LA 151
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQIVRCLLS 158
D+ G+TAL + V G D + L+ + L D +G TALH+A R ++V L+
Sbjct: 74 DENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 159 IEGIDVNSLNKAGESPLDVAEKL 181
+ G D+ ++ G + L++A ++
Sbjct: 133 L-GADIEVEDERGLTALELAREI 154
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
T TAA + ++ LLE D ++ + NG+T L A +G + V+ L
Sbjct: 46 TPWWTAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 97 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 144
R + G TALHMA ++V L+ + ++ED +G TAL +A
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
V D + TAL A G V L E ++L G T LH AA EVV+A
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 88 LVSKDPSTGFRTDKKGQTALHMA 110
LV D++G TAL +A
Sbjct: 129 LVELGADIEVE-DERGLTALELA 150
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQIVRCLLS 158
D+ G+TAL + V G D + L+ + L D +G TALH+A R ++V L+
Sbjct: 73 DENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 159 IEGIDVNSLNKAGESPLDVAEKL 181
+ G D+ ++ G + L++A ++
Sbjct: 132 L-GADIEVEDERGLTALELAREI 153
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
D+ G + LH A ++GR+ +V L+ + G +N +N+ ++PL +A G+ ++ L +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 194 GAAHS--KDHGKPP 205
A + +HG P
Sbjct: 90 KADINAVNEHGNVP 103
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
T LH AA+ GH D+V LL+ +++ + +G LH A G +V + LV+
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVA 121
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
D+ G + LH A ++GR+ +V L+ + G +N +N+ ++PL +A G+ ++ L
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
T LH AA+ GH D+V LL+ +++ + +G LH A G +V + LV+
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVA 126
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 89
+ D + T LH A A + V LL + ++G T L AAR+ +V+ L+
Sbjct: 79 SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 138
Query: 90 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 149
+ D D G+TALH A N + V L+ + +D+K T L +A ++G
Sbjct: 139 TADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGS 196
Query: 150 TQIVRCLLS 158
+ + LL
Sbjct: 197 YEASKALLD 205
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 142
+V+ L+++ DK G+T+LH+A + D L+ +DN G T LH
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLH 89
Query: 143 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
A+ + + LL ++N+ G +PL +A +L
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL 128
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
D G+T LH AV + L+R + L + G T L +A + +V L++
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
+ D+N+ + +G++ L A + NTE ++L
Sbjct: 141 DA-DINAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 32 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVS 90
D S TALH AAA + + VN LL +N + A+++ +T L AAR G E KAL+
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHAN--RDAQDDKDETPLFLAAREGSYEASKALLD 205
Query: 91 K 91
Sbjct: 206 N 206
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
D+ G LH A G T + CL G D+ + + G PL +A + N ++ +LL+
Sbjct: 265 DSAGRGPLHHATILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 138 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
+ L A +G+ + VR LL G D N+LN+ G P+ V +G+ ++ LL GA
Sbjct: 13 DAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGA 68
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMAVKGQNE 116
G + LH A L+ VK LV R + G+ L +A +
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 117 DIVLELIR-P-DPSVLKLEDNKGNTALH----------------IAIKKGRTQI-VRCLL 157
D+V L+ P P+ L+ D+ GNT LH I + G Q+ R
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
+++ +++ N G +PL +A K G E+F
Sbjct: 210 TVQLEEIS--NHQGLTPLKLAAKEGKIEIF 237
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
LH AA G ++++ FLL +++ +++ T L SA GH+ VK L+SK
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSK 95
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
G LH A G+ +I+ LL ++G D+N+ +K +PL A G+ LL GA
Sbjct: 40 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMAVKGQNE 116
G + LH A L+ VK LV R + G+ L +A +
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 117 DIVLELIR-P-DPSVLKLEDNKGNTALH----------------IAIKKGRTQI-VRCLL 157
D+V L+ P P+ L+ D+ GNT LH I + G Q+ R
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 222
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
+++ +++ N G +PL +A K G E+F
Sbjct: 223 TVQLEEIS--NHQGLTPLKLAAKEGKIEIF 250
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
LH AA G ++++ FLL +++ +++ T L SA GH+ VK L+SK
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHH-ITPLLSAVYEGHVSCVKLLLSK 90
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
G LH A G+ +I+ LL ++G D+N+ +K +PL A G+ LL GA
Sbjct: 35 GRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 59 SNLAKIARNNGKTVLHSAARMGHLEVVKALVS--KDPSTGFRTDKKG 103
+N+ +NG T L+ AAR+G++ +V AL+ DP F +K G
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP---FIANKSG 316
>pdb|3REV|A Chain A, Crystal Structure Of Human Alloreactive Tcr Nb20
Length = 203
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 81 HLEVVKALVSKDPSTGF---RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 136
HL+ ALVS D + F R G T L KG ++ + +PDP+V +L D+K
Sbjct: 74 HLKKPSALVS-DSALYFCAVRDMNSGNTPLVFG-KGTRLSVIANIQKPDPAVYQLRDSK 130
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 73 LHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 130
LH AA + ++VK L+ D S + D KG TAL+ AV N V ++ + +
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLX 122
Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLS 158
T+ + A+ IV LS
Sbjct: 123 FYGKTGWKTSFYHAVXLNDVSIVSYFLS 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,355,807
Number of Sequences: 62578
Number of extensions: 362160
Number of successful extensions: 1781
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 428
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)