BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013763
         (437 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The
           Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
 pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The
           Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
          Length = 110

 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 254 GHWYGYVAPDDVPTLLEQHIGKGEIVDWL 282
           G WYG V P+DV  ++E+H+  GE V+ L
Sbjct: 71  GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99


>pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
           Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
 pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
           Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
          Length = 110

 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 254 GHWYGYVAPDDVPTLLEQHIGKGEIVDWL 282
           G WYG V P+DV  ++E+H+  GE V+ L
Sbjct: 71  GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99


>pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
           Aquifex Aeolicus
 pdb|1F37|B Chain B, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
           Aquifex Aeolicus
 pdb|1M2A|A Chain A, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
           Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
           Aeolicus
 pdb|1M2A|B Chain B, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
           Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
           Aeolicus
          Length = 110

 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 254 GHWYGYVAPDDVPTLLEQHIGKGEIVDWL 282
           G WYG V P+DV  ++E+H+  GE V+ L
Sbjct: 71  GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99


>pdb|4ITR|A Chain A, Crystal Structure Of Ibpafic2-h3717a In Complex With
           Adenylylated Cdc42
 pdb|4ITR|B Chain B, Crystal Structure Of Ibpafic2-h3717a In Complex With
           Adenylylated Cdc42
          Length = 316

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 64  FSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRL 107
           FS PE    QLA TVDF  R      KN  + P  + A  + RL
Sbjct: 194 FSSPEAAKIQLAETVDFINRA-----KNEGIEPSVVGALVYQRL 232


>pdb|3N3U|A Chain A, Crystal Structure Of Ibpafic2
          Length = 299

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 64  FSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRL 107
           FS PE    QLA TVDF  R      KN  + P  + A  + RL
Sbjct: 188 FSSPEAAKIQLAETVDFINRA-----KNEGIEPSVVGALVYQRL 226


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,982,569
Number of Sequences: 62578
Number of extensions: 537403
Number of successful extensions: 1094
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 10
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)