Query 013763
Match_columns 437
No_of_seqs 217 out of 1195
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2d_A [2Fe-2S] ferredoxin; th 99.7 2.1E-17 7.1E-22 140.8 8.0 96 185-287 3-104 (110)
2 2auv_A Potential NAD-reducing 99.3 2.7E-13 9.2E-18 110.1 0.9 77 183-272 4-85 (85)
3 3i9v_2 NADH-quinone oxidoreduc 99.1 1.9E-11 6.6E-16 113.3 4.4 90 181-284 73-168 (181)
4 1m2d_A [2Fe-2S] ferredoxin; th 81.4 1.8 6E-05 36.0 4.8 30 143-172 64-93 (110)
5 4etm_A LMPTP, low molecular we 42.7 32 0.0011 30.8 5.3 38 186-230 20-58 (173)
6 3jvi_A Protein tyrosine phosph 31.1 57 0.0019 28.6 4.9 38 186-230 6-44 (161)
7 1u2p_A Ptpase, low molecular w 30.0 69 0.0024 27.9 5.3 36 186-228 6-42 (163)
8 3n8i_A Low molecular weight ph 28.4 68 0.0023 28.1 4.9 39 185-230 6-45 (157)
9 1d1q_A Tyrosine phosphatase (E 28.2 79 0.0027 27.6 5.3 37 185-228 8-46 (161)
10 1e2b_A Enzyme IIB-cellobiose; 28.1 91 0.0031 25.5 5.4 43 202-246 14-58 (106)
11 1tvm_A PTS system, galactitol- 27.7 1.2E+02 0.0042 24.8 6.1 52 186-246 23-77 (113)
12 2gi4_A Possible phosphotyrosin 26.8 72 0.0024 27.8 4.8 37 186-229 3-40 (156)
13 2cwd_A Low molecular weight ph 26.3 79 0.0027 27.6 4.9 38 186-230 6-44 (161)
14 2l2q_A PTS system, cellobiose- 26.2 93 0.0032 25.3 5.1 35 187-230 7-41 (109)
15 3rof_A Low molecular weight pr 26.0 88 0.003 27.5 5.2 36 186-229 8-44 (158)
16 3or5_A Thiol:disulfide interch 21.5 1.3E+02 0.0046 24.3 5.3 36 237-274 116-151 (165)
No 1
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.70 E-value=2.1e-17 Score=140.82 Aligned_cols=96 Identities=29% Similarity=0.514 Sum_probs=83.3
Q ss_pred ccEEEEccCCCCCC----CcccCc-HHHHHHHHHHHHHc-CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCcccEEEe
Q 013763 185 GWYVFVCSHASRDR----RCGVCG-PPLVSRFKEEIETH-GLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYG 258 (437)
Q Consensus 185 ~~~ILVCtHg~RD~----rCGi~G-~~L~~aL~eel~~~-GL~~~V~V~~tSHlGGHcfAGnVIv~~P~~~g~~~GvwYG 258 (437)
+.+|+||++.+||. +|...| ..|+++|+++|..+ |+.+.|.|..++|+ |.|..||+|+++| +|+|||
T Consensus 3 ~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~Cl-G~C~~gP~v~V~P------~~~~y~ 75 (110)
T 1m2d_A 3 FKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYP------DGVWYG 75 (110)
T ss_dssp CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEET------TTEEEC
T ss_pred ceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCC-CccCCCCEEEEEe------CCEEEe
Confidence 47899999998884 899998 79999999999998 87767999999999 5566666666666 689999
Q ss_pred ccCCCCHHHHHHHHHhCCeeccceecccC
Q 013763 259 YVAPDDVPTLLEQHIGKGEIVDWLWRGQM 287 (437)
Q Consensus 259 rVtPedV~~IVeehL~~G~iv~~l~RG~~ 287 (437)
+|||++|++||++||.+|+++++|++...
T Consensus 76 ~vt~e~v~~il~~~l~~g~~v~~l~~~~~ 104 (110)
T 1m2d_A 76 QVKPEDVDEIVEKHLKGGEPVERLVISKG 104 (110)
T ss_dssp SCCGGGHHHHHHHTTTTSCCCGGGEEEC-
T ss_pred cCCHHHHHHHHHHHHHCCcChHHhcccCc
Confidence 99999999999999999999999987653
No 2
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.31 E-value=2.7e-13 Score=110.11 Aligned_cols=77 Identities=25% Similarity=0.406 Sum_probs=68.2
Q ss_pred CCccEEEEccCCCCCCCcccCc-HHHHHHHHHHHHHcCC----CCcEEEEeecCCCCcccCccEEEEcCCCCCCcccEEE
Q 013763 183 LKGWYVFVCSHASRDRRCGVCG-PPLVSRFKEEIETHGL----LGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWY 257 (437)
Q Consensus 183 l~~~~ILVCtHg~RD~rCGi~G-~~L~~aL~eel~~~GL----~~~V~V~~tSHlGGHcfAGnVIv~~P~~~g~~~GvwY 257 (437)
..+.+|+||+.. +|...| ..|+++|+++|..+++ ++.+.|..++|+ |.|..||+|.+. |+||
T Consensus 4 ~g~~~I~VC~g~----~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~Cl-G~C~~~P~v~V~--------~~~y 70 (85)
T 2auv_A 4 KGKYPISVCMGT----ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCV-GGCALAPIVMVG--------EKVY 70 (85)
T ss_dssp CCSBCEECCCCH----HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSS-SSCTTSCCCEEG--------GGCC
T ss_pred CCCEEEEECCCc----hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCcc-CcCCCCCEEEEC--------CEEE
Confidence 456789999987 799998 6999999999988877 567999999999 889999999884 6899
Q ss_pred eccCCCCHHHHHHHH
Q 013763 258 GYVAPDDVPTLLEQH 272 (437)
Q Consensus 258 GrVtPedV~~IVeeh 272 (437)
++|+|+++++||++|
T Consensus 71 ~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 71 GNVTPGQVKKILAEY 85 (85)
T ss_dssp CCSSSSHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 999999999999875
No 3
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=99.14 E-value=1.9e-11 Score=113.30 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=77.0
Q ss_pred CCCCccEEEEccCCCCCCCcccCc-HHHHHHHHHHHHHc----CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCcccE
Q 013763 181 EKLKGWYVFVCSHASRDRRCGVCG-PPLVSRFKEEIETH----GLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGH 255 (437)
Q Consensus 181 e~l~~~~ILVCtHg~RD~rCGi~G-~~L~~aL~eel~~~----GL~~~V~V~~tSHlGGHcfAGnVIv~~P~~~g~~~Gv 255 (437)
++..+.+|+||+.. +|...| ..|+++|+++|... ..++.+.+..++|+ |.|..||+|.+ ++.
T Consensus 73 ~P~gk~~I~VC~gt----~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~Cl-G~C~~gPvv~V--------~~~ 139 (181)
T 3i9v_2 73 VPTGKYHLQVCATL----SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQV--------NDE 139 (181)
T ss_dssp SCCCSEEEEEECSH----HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCC-SCGGGCSCEEC--------SSS
T ss_pred CCCCCEEEEECCCc----hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCC-CccCCCCEEEE--------CCE
Confidence 44556899999997 899998 69999999999743 24567999999999 89999999988 356
Q ss_pred -EEeccCCCCHHHHHHHHHhCCeeccceec
Q 013763 256 -WYGYVAPDDVPTLLEQHIGKGEIVDWLWR 284 (437)
Q Consensus 256 -wYGrVtPedV~~IVeehL~~G~iv~~l~R 284 (437)
||++|||++|++||++ +.+|+++++|..
T Consensus 140 ~~y~~vt~e~v~~Il~~-l~~g~~ve~l~~ 168 (181)
T 3i9v_2 140 PYVECVTRARLEALLAG-LRAGKRLEEIEL 168 (181)
T ss_dssp CCBCCCCHHHHHHHHHH-HHTTCCGGGCCC
T ss_pred EEEcCCCHHHHHHHHHH-HHcCCChhheec
Confidence 9999999999999998 799999998854
No 4
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=81.36 E-value=1.8 Score=35.98 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=25.7
Q ss_pred eEEEecCcEEEccCCCCCHHHHHHHHhhcC
Q 013763 143 DVLIFPDMIRYRRLTHFDVDTFVEEVLVKN 172 (437)
Q Consensus 143 ~VLIfPd~~~~~~l~~~dv~~fv~~~L~~d 172 (437)
.|.|+|+..+|.+++..+++++++..+..+
T Consensus 64 ~v~V~P~~~~y~~vt~e~v~~il~~~l~~g 93 (110)
T 1m2d_A 64 VVVVYPDGVWYGQVKPEDVDEIVEKHLKGG 93 (110)
T ss_dssp CEEEETTTEEECSCCGGGHHHHHHHTTTTS
T ss_pred EEEEEeCCEEEecCCHHHHHHHHHHHHHCC
Confidence 688889999999999999999998876543
No 5
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=42.70 E-value=32 Score=30.80 Aligned_cols=38 Identities=26% Similarity=0.630 Sum_probs=26.0
Q ss_pred cEEEEccCCCCCCCcccCcHHHHHH-HHHHHHHcCCCCcEEEEeec
Q 013763 186 WYVFVCSHASRDRRCGVCGPPLVSR-FKEEIETHGLLGKVSVSPCS 230 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~G~~L~~a-L~eel~~~GL~~~V~V~~tS 230 (437)
..+|||++. +|=.++.++ |++.++++||.+.+.|.-.|
T Consensus 20 kVLFVCtGN-------iCRSpmAE~i~r~~~~~~gl~~~~~v~SAG 58 (173)
T 4etm_A 20 SVLFVCLGN-------ICRSPMAEAIFRDLAAKKGLEGKIKADSAG 58 (173)
T ss_dssp EEEEEESSS-------SSHHHHHHHHHHHHHHHTTCTTTEEEEEEE
T ss_pred EEEEEeCCc-------chhhHHHHHHHHHHHHHcCCCCceEEeccc
Confidence 579999987 443455555 44556788998777776544
No 6
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=31.11 E-value=57 Score=28.65 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=23.8
Q ss_pred cEEEEccCCCCCCCcccCcHHHHHHH-HHHHHHcCCCCcEEEEeec
Q 013763 186 WYVFVCSHASRDRRCGVCGPPLVSRF-KEEIETHGLLGKVSVSPCS 230 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~G~~L~~aL-~eel~~~GL~~~V~V~~tS 230 (437)
..+|||++. +|=.++.+++ ++.++++||.+.+.|.-.|
T Consensus 6 ~vLFVC~gN-------~cRSpmAE~~~~~~~~~~gl~~~~~v~SAG 44 (161)
T 3jvi_A 6 KLLFVCLGN-------ICRSPAAEAVMKKVIQNHHLTEKYICDSAG 44 (161)
T ss_dssp EEEEEESSS-------SSHHHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred EEEEECCCc-------hhHHHHHHHHHHHHHHHcCCCCcEEEEeee
Confidence 578999997 3333455544 4445678887667665433
No 7
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=29.96 E-value=69 Score=27.94 Aligned_cols=36 Identities=25% Similarity=0.646 Sum_probs=22.6
Q ss_pred cEEEEccCCCCCCCcccCcHHHHHHH-HHHHHHcCCCCcEEEEe
Q 013763 186 WYVFVCSHASRDRRCGVCGPPLVSRF-KEEIETHGLLGKVSVSP 228 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~G~~L~~aL-~eel~~~GL~~~V~V~~ 228 (437)
..+|||+|. +|=.++.++| ++.++++|+.+.+.|.-
T Consensus 6 ~VLFVC~gN-------~cRSpmAEal~~~~~~~~gl~~~~~v~S 42 (163)
T 1u2p_A 6 HVTFVCTGN-------ICRSPMAEKMFAQQLRHRGLGDAVRVTS 42 (163)
T ss_dssp EEEEEESSS-------SSHHHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred EEEEEcCCc-------HhHHHHHHHHHHHHHHHCCCCCcEEEEe
Confidence 579999997 3333444444 44456778876666654
No 8
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=28.37 E-value=68 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.412 Sum_probs=24.7
Q ss_pred ccEEEEccCCCCCCCcccCcHHHHHHH-HHHHHHcCCCCcEEEEeec
Q 013763 185 GWYVFVCSHASRDRRCGVCGPPLVSRF-KEEIETHGLLGKVSVSPCS 230 (437)
Q Consensus 185 ~~~ILVCtHg~RD~rCGi~G~~L~~aL-~eel~~~GL~~~V~V~~tS 230 (437)
...+|||++. +|=.++.+++ ++.+.++||.+.+.|.-.|
T Consensus 6 ~~vLFVC~gN-------~cRSpmAE~~~~~~~~~~gl~~~~~v~SAG 45 (157)
T 3n8i_A 6 KSVLFVCLGN-------ICRSPIAEAVFRKLVTDQNISENWRVDSAA 45 (157)
T ss_dssp EEEEEEESSS-------SSHHHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred CEEEEECCCc-------hhHHHHHHHHHHHHHHHcCCCCcEEEEeee
Confidence 4678999997 4434555543 4445678887667665443
No 9
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=28.18 E-value=79 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=22.6
Q ss_pred ccEEEEccCCCCCCCcccCcHHHHHHH-HHHHHHcCCCCc-EEEEe
Q 013763 185 GWYVFVCSHASRDRRCGVCGPPLVSRF-KEEIETHGLLGK-VSVSP 228 (437)
Q Consensus 185 ~~~ILVCtHg~RD~rCGi~G~~L~~aL-~eel~~~GL~~~-V~V~~ 228 (437)
...+|||+|. +|=.++.++| ++.+.++||.+. +.|.-
T Consensus 8 ~~VLFVCtgN-------~cRSpmAEal~~~~~~~~gl~~~~~~v~S 46 (161)
T 1d1q_A 8 ISVAFIALGN-------FCRSPMAEAIFKHEVEKANLENRFNKIDS 46 (161)
T ss_dssp EEEEEEESSS-------SSHHHHHHHHHHHHHHHTTCGGGEEEEEE
T ss_pred CEEEEEcCCc-------HHHHHHHHHHHHHHHHHcCCCCCeEEEEe
Confidence 4689999997 3433555544 334566788655 55543
No 10
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.12 E-value=91 Score=25.49 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=26.7
Q ss_pred cCcHHHHHHHHHHHHHcCCCCcEEEEeecC--CCCcccCccEEEEcC
Q 013763 202 VCGPPLVSRFKEEIETHGLLGKVSVSPCSH--IGGHKYAGNVIIFGS 246 (437)
Q Consensus 202 i~G~~L~~aL~eel~~~GL~~~V~V~~tSH--lGGHcfAGnVIv~~P 246 (437)
..-..+.+.+++.++++|++ +.|..++- +..+-....+|++.|
T Consensus 14 ~sTS~l~~k~~~~~~~~gi~--~~i~a~~~~~~~~~~~~~Dvil~~p 58 (106)
T 1e2b_A 14 MSTSLLVSKMRAQAEKYEVP--VIIEAFPETLAGEKGQNADVVLLGP 58 (106)
T ss_dssp TTTHHHHHHHHHHHHHSCCS--EEEEEECSSSTTHHHHHCSEEEECT
T ss_pred hhHHHHHHHHHHHHHHCCCC--eEEEEecHHHHHhhccCCCEEEEcc
Confidence 43358889999999999996 56655442 222112234666655
No 11
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=27.70 E-value=1.2e+02 Score=24.84 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=30.9
Q ss_pred cEEEEccCCCCCCCcccC-cHHHHHHHHHHHHHcCCCCcEEEEeec--CCCCcccCccEEEEcC
Q 013763 186 WYVFVCSHASRDRRCGVC-GPPLVSRFKEEIETHGLLGKVSVSPCS--HIGGHKYAGNVIIFGS 246 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~-G~~L~~aL~eel~~~GL~~~V~V~~tS--HlGGHcfAGnVIv~~P 246 (437)
..++||+.| .. ...|...|++.+++.|++ +.|..++ -+-..-....+|+..+
T Consensus 23 kIlvvC~sG-------~gTS~ll~~kl~~~~~~~gi~--~~V~~~~~~~~~~~~~~~DlIist~ 77 (113)
T 1tvm_A 23 KIIVACGGA-------VATSTMAAEEIKELCQSHNIP--VELIQCRVNEIETYMDGVHLICTTA 77 (113)
T ss_dssp EEEEESCSC-------SSHHHHHHHHHHHHHHHTTCC--EEEEEECTTTTTTSTTSCSEEEESS
T ss_pred EEEEECCCC-------HHHHHHHHHHHHHHHHHcCCe--EEEEEecHHHHhhccCCCCEEEECC
Confidence 456777654 33 246799999999999986 4444433 3322112345666654
No 12
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=26.85 E-value=72 Score=27.84 Aligned_cols=37 Identities=14% Similarity=0.397 Sum_probs=22.6
Q ss_pred cEEEEccCCCCCCCcccCcHHHHHHHH-HHHHHcCCCCcEEEEee
Q 013763 186 WYVFVCSHASRDRRCGVCGPPLVSRFK-EEIETHGLLGKVSVSPC 229 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~G~~L~~aL~-eel~~~GL~~~V~V~~t 229 (437)
..+|||++. +|=.++.++|- +.+.++||.+.+.|.-.
T Consensus 3 ~VLFVC~gN-------icRSpmAEai~~~~~~~~gl~~~~~v~SA 40 (156)
T 2gi4_A 3 KILFICLGN-------ICRSPMAEFIMKDLVKKANLEKEFFINSA 40 (156)
T ss_dssp EEEEECSSC-------SSHHHHHHHHHHHHHHHHTTTTTCEEEEE
T ss_pred EEEEEeCCC-------HHHHHHHHHHHHHHHHhCCCCCcEEEEee
Confidence 478999997 34345555443 34466788656666543
No 13
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=26.34 E-value=79 Score=27.62 Aligned_cols=38 Identities=21% Similarity=0.499 Sum_probs=23.1
Q ss_pred cEEEEccCCCCCCCcccCcHHHHHHHHH-HHHHcCCCCcEEEEeec
Q 013763 186 WYVFVCSHASRDRRCGVCGPPLVSRFKE-EIETHGLLGKVSVSPCS 230 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~G~~L~~aL~e-el~~~GL~~~V~V~~tS 230 (437)
..+|||+|. +|=.++.++|-+ .+.++||.+.+.|.-.|
T Consensus 6 ~VLFVC~gN-------~cRSpmAEal~~~~~~~~gl~~~~~v~SAG 44 (161)
T 2cwd_A 6 RVLFVCLGN-------ICRSPMAEGIFRKLLKERGLEDRFEVDSAG 44 (161)
T ss_dssp EEEEEESSS-------SSHHHHHHHHHHHHHHHHTCTTTEEEEEEE
T ss_pred EEEEECCCc-------HHHHHHHHHHHHHHHHHcCCCCcEEEEecc
Confidence 579999997 343355554433 34566886566665433
No 14
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.21 E-value=93 Score=25.27 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=24.4
Q ss_pred EEEEccCCCCCCCcccCcHHHHHHHHHHHHHcCCCCcEEEEeec
Q 013763 187 YVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCS 230 (437)
Q Consensus 187 ~ILVCtHg~RD~rCGi~G~~L~~aL~eel~~~GL~~~V~V~~tS 230 (437)
.++||+.| ..-..+.+.+++.++++|++ +.|..++
T Consensus 7 IlvvC~~G-------~~TSll~~kl~~~~~~~gi~--~~i~~~~ 41 (109)
T 2l2q_A 7 ILLVCGAG-------MSTSMLVQRIEKYAKSKNIN--ATIEAIA 41 (109)
T ss_dssp EEEESSSS-------CSSCHHHHHHHHHHHHHTCS--EEEEEEC
T ss_pred EEEECCCh-------HhHHHHHHHHHHHHHHCCCC--eEEEEec
Confidence 56777764 33128889999999999985 5555444
No 15
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=26.03 E-value=88 Score=27.53 Aligned_cols=36 Identities=17% Similarity=0.486 Sum_probs=22.4
Q ss_pred cEEEEccCCCCCCCcccCcHHHHHHH-HHHHHHcCCCCcEEEEee
Q 013763 186 WYVFVCSHASRDRRCGVCGPPLVSRF-KEEIETHGLLGKVSVSPC 229 (437)
Q Consensus 186 ~~ILVCtHg~RD~rCGi~G~~L~~aL-~eel~~~GL~~~V~V~~t 229 (437)
..+|||++. +|=.++.+++ ++.++++||.+ +.|.-.
T Consensus 8 ~vLFVC~gN-------~cRSpmAE~i~~~~~~~~gl~~-~~v~SA 44 (158)
T 3rof_A 8 DVAFVCLGN-------ICRSPMAEAIMRQRLKDRNIHD-IKVHSR 44 (158)
T ss_dssp EEEEEESSS-------SSHHHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEEEEeCCc-------hhHHHHHHHHHHHHHHHcCCCC-eEEEec
Confidence 578999997 3434555554 44456778864 666543
No 16
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=21.50 E-value=1.3e+02 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=20.5
Q ss_pred cCccEEEEcCCCCCCcccEEEeccCCCCHHHHHHHHHh
Q 013763 237 YAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIG 274 (437)
Q Consensus 237 fAGnVIv~~P~~~g~~~GvwYGrVtPedV~~IVeehL~ 274 (437)
.-+.++++.++ |.+-..+.|..+++++..+|++.|.
T Consensus 116 ~~P~~~lid~~--G~i~~~~~g~~~~~~l~~~l~~~l~ 151 (165)
T 3or5_A 116 GIPTSFVIDAS--GNVSGVIVGPRSKADFDRIVKMALG 151 (165)
T ss_dssp SSSEEEEECTT--SBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred CCCeEEEECCC--CcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 34555666552 2222345566777777777776553
Done!