Citrus Sinensis ID: 013764

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MADGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE
cccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccccEEEEEEEccccccccccEEEEcccccHHHHHHHHHccccEEEEEEEcccEEEEEEEccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccHHHHHHcccccccHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHcccccEEEEEcccccEEEEEEEcccccEEEEEcccccccccccccccccccccHHHHHccHHHHHHHHHHHcccEEEEEccccccHHHHHcccccEEEEEEcccccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHccHHHcHcHHcHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccEEEEEEEEcccccccEEEEEccccccHHHHHHHHHccccEEEEEEccccEEEEEEEccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHccccccHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHccccEEEEEEEcccEEEEEEEccccccEEEEEEccccccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHccHHHHHEEEEEcHHHHcccccccccccccc
madgqetdkNIEIWKIKKLIKALEAArgngtsmislimpprdqVSRVTKMLGdefgtasniksrvNRQSVLGAITSAQQRLKLynkvppnglvlytgtivtddgkekkvtidfepfrpinaslylcdnKFHTDALNELlesddkfgfivmdgngtlfgtlsgntREVLHKFSvdlpkkhgrggqsALRFARLRMEKRHNYVRKTAELATQFyinpatsqpnvsglvlagsadfktelsqsdmfdprlQAKILKVVDVsyggengfNQAIELSAESLSNVKFIQEKRLIGKYFEEIsqdtgkyvfgaddtlkaldmgaVDTLIVWENLDITRYVLKNTVTGEIVIKHLNReqetnqnnfrdsatsAELEVQEKSSLLEWFANEYRrfgctlefvtnksqegsqfcrgfggiggILRYqldmrsfdefsddgeiyddse
madgqetdknieiWKIKKLIKALEAArgngtsmislimpprdQVSRVTKMLGDEfgtasniksrvnrQSVLGAITSAQQRLKlynkvppnglvlytgtivtddgkEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFsvdlpkkhgrggqSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHlnreqetnqnnfrdsatsAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMrsfdefsddgeiyddse
MADGQETDKNieiwkikklikaleaaRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE
**********IEIWKIKKLIKALEAARGNGTSMISLIM***********ML***F*********VNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP*********ALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKT******MFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHL**************************SLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFD*************
***************IKKLIKALEA**G*GTSMISLIMPPRDQVSRVTKML************************SAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF*********************RMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHL****************SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSD*********
********KNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE
******TDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKH*RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDE************
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MADGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
P35614435 Eukaryotic peptide chain yes no 0.995 1.0 0.897 0.0
Q9LPV8434 Eukaryotic peptide chain no no 0.990 0.997 0.880 0.0
Q39097436 Eukaryotic peptide chain no no 0.990 0.993 0.878 0.0
Q9GR88435 Eukaryotic peptide chain N/A no 0.965 0.970 0.771 0.0
Q9VPH7438 Eukaryotic peptide chain yes no 0.983 0.981 0.736 0.0
Q5U2Q7437 Eukaryotic peptide chain yes no 0.983 0.983 0.740 0.0
P62497437 Eukaryotic peptide chain yes no 0.983 0.983 0.740 0.0
Q8BWY3437 Eukaryotic peptide chain yes no 0.983 0.983 0.740 0.0
P62496437 Eukaryotic peptide chain N/A no 0.983 0.983 0.740 0.0
P62495437 Eukaryotic peptide chain yes no 0.983 0.983 0.740 0.0
>sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1 Back     alignment and function desciption
 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/437 (89%), Positives = 416/437 (95%), Gaps = 2/437 (0%)

Query: 1   MADGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASN 60
           MAD QE+DKNIEIWKIKKLIK LE ARGNGTSMISLIMPPRDQV+RVTKML DE+GTASN
Sbjct: 1   MAD-QESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASN 59

Query: 61  IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPIN 120
           IKSRVNRQSVL AITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPF+PIN
Sbjct: 60  IKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPIN 119

Query: 121 ASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG 180
           ASLYLCDNKFHT+ LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHG
Sbjct: 120 ASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG 179

Query: 181 RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQS 240
           RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL+LAGSADFKTELSQS
Sbjct: 180 RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQS 239

Query: 241 DMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTG 300
           ++FDPRLQAKIL VVDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIGKYFEEISQDTG
Sbjct: 240 ELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTG 299

Query: 301 KYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRD 360
           KYVFG +DTLKAL+MGAV+TLIVWENLDI RY LKN  TGEIVIKHL ++QE NQ+NF D
Sbjct: 300 KYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHD 359

Query: 361 SATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420
           + T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDM
Sbjct: 360 AETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDM 419

Query: 421 RSFDEFSDDGEIYDDSE 437
           R+FDE S DGE+Y+DS+
Sbjct: 420 RTFDELS-DGEVYEDSD 435
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LPV8|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q39097|ERF1X_ARATH Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2 Back     alignment and function description
>sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3 Back     alignment and function description
>sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4 Back     alignment and function description
>sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
225460446437 PREDICTED: eukaryotic peptide chain rele 1.0 1.0 0.940 0.0
147783001437 hypothetical protein VITISV_020937 [Viti 1.0 1.0 0.938 0.0
225458331437 PREDICTED: eukaryotic peptide chain rele 1.0 1.0 0.935 0.0
294460161437 unknown [Picea sitchensis] 1.0 1.0 0.926 0.0
356531058437 PREDICTED: eukaryotic peptide chain rele 1.0 1.0 0.926 0.0
356498653437 PREDICTED: eukaryotic peptide chain rele 1.0 1.0 0.924 0.0
449448665436 PREDICTED: eukaryotic peptide chain rele 0.997 1.0 0.931 0.0
307135817436 eukaryotic peptide chain release factor 0.997 1.0 0.931 0.0
449502581436 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.997 1.0 0.926 0.0
449445606436 PREDICTED: eukaryotic peptide chain rele 0.997 1.0 0.926 0.0
>gi|225460446|ref|XP_002271656.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/437 (94%), Positives = 429/437 (98%)

Query: 1   MADGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASN 60
           MADG ETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQ+SRVTKMLGDEFGTASN
Sbjct: 1   MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASN 60

Query: 61  IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPIN 120
           IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT+DGKEKKVTIDFEPFRPIN
Sbjct: 61  IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPIN 120

Query: 121 ASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG 180
           ASLYLCDNKFHT+ALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHG
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG 180

Query: 181 RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQS 240
           RGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGL+LAGSADFKTELSQS
Sbjct: 181 RGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQS 240

Query: 241 DMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTG 300
           DMFDPRLQAKIL VVDVSYGGENGFNQAIELS+E LSNVKFIQEKRLIGKYFEEISQDTG
Sbjct: 241 DMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTG 300

Query: 301 KYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRD 360
           KYVFG DDTLKAL+MGAV+TLIVWENLDI+RYVLKN +TGEIVIKHLN+EQE+NQ++FRD
Sbjct: 301 KYVFGVDDTLKALEMGAVETLIVWENLDISRYVLKNNITGEIVIKHLNKEQESNQSHFRD 360

Query: 361 SATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420
           +ATSAELEVQEK SLLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM
Sbjct: 361 TATSAELEVQEKMSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420

Query: 421 RSFDEFSDDGEIYDDSE 437
           RSFDE SDDGE YDDS+
Sbjct: 421 RSFDEVSDDGENYDDSD 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147783001|emb|CAN63440.1| hypothetical protein VITISV_020937 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458331|ref|XP_002283027.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera] gi|147780810|emb|CAN77215.1| hypothetical protein VITISV_036372 [Vitis vinifera] Back     alignment and taxonomy information
>gi|294460161|gb|ADE75663.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356531058|ref|XP_003534095.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] Back     alignment and taxonomy information
>gi|356498653|ref|XP_003518164.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] Back     alignment and taxonomy information
>gi|449448665|ref|XP_004142086.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135817|gb|ADN33689.1| eukaryotic peptide chain release factor subunit [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449502581|ref|XP_004161683.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445606|ref|XP_004140563.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] gi|449487371|ref|XP_004157593.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2088857435 ERF1-3 "AT3G26618" [Arabidopsi 0.995 1.0 0.864 8.2e-202
TAIR|locus:2010341434 ERF1-2 "AT1G12920" [Arabidopsi 0.988 0.995 0.849 1.1e-197
TAIR|locus:2160972436 ERF1-1 "AT5G47880" [Arabidopsi 0.995 0.997 0.842 1.9e-195
FB|FBgn0036974438 eRF1 "eukaryotic release facto 0.983 0.981 0.707 2.7e-164
ZFIN|ZDB-GENE-021029-1442 etf1 "eukaryotic translation t 0.988 0.977 0.704 6.5e-161
UNIPROTKB|E1BTM1437 ETF1 "Uncharacterized protein" 0.988 0.988 0.708 4.6e-160
UNIPROTKB|Q0VCX5437 ETF1 "Eukaryotic peptide chain 0.988 0.988 0.708 4.6e-160
UNIPROTKB|E2RBM3437 ETF1 "Uncharacterized protein" 0.988 0.988 0.708 4.6e-160
UNIPROTKB|P62495437 ETF1 "Eukaryotic peptide chain 0.988 0.988 0.708 4.6e-160
UNIPROTKB|F2Z505437 ETF1 "Uncharacterized protein" 0.988 0.988 0.708 4.6e-160
TAIR|locus:2088857 ERF1-3 "AT3G26618" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1953 (692.5 bits), Expect = 8.2e-202, P = 8.2e-202
 Identities = 378/437 (86%), Positives = 402/437 (91%)

Query:     1 MADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASN 60
             MAD QE+DKN                RGNGTSMISLIMPPRDQV+RVTKML DE+GTASN
Sbjct:     1 MAD-QESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASN 59

Query:    61 IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPIN 120
             IKSRVNRQSVL AITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPF+PIN
Sbjct:    60 IKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPIN 119

Query:   121 ASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG 180
             ASLYLCDNKFHT+ LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHG
Sbjct:   120 ASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG 179

Query:   181 RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQS 240
             RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL+LAGSADFKTELSQS
Sbjct:   180 RGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQS 239

Query:   241 DMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTG 300
             ++FDPRLQAKIL VVDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIGKYFEEISQDTG
Sbjct:   240 ELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTG 299

Query:   301 KYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRD 360
             KYVFG +DTLKAL+MGAV+TLIVWENLDI RY LKN  TGEIVIKHL ++QE NQ+NF D
Sbjct:   300 KYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHD 359

Query:   361 SATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420
             + T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDM
Sbjct:   360 AETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDM 419

Query:   421 RSFDEFSDDGEIYDDSE 437
             R+FDE SD GE+Y+DS+
Sbjct:   420 RTFDELSD-GEVYEDSD 435
GO:0003747 "translation release factor activity" evidence=IGI;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006415 "translational termination" evidence=IEA;IGI;ISS
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
TAIR|locus:2010341 ERF1-2 "AT1G12920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160972 ERF1-1 "AT5G47880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036974 eRF1 "eukaryotic release factor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021029-1 etf1 "eukaryotic translation termination factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTM1 ETF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCX5 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBM3 ETF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62495 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z505 ETF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5JGK6RF1_PYRKONo assigned EC number0.31740.92900.9783yesno
Q39097ERF1X_ARATHNo assigned EC number0.87810.99080.9931nono
Q8TUM4RF11_METACNo assigned EC number0.30650.91070.9590yesno
C5ZZZ5RF1_THESMNo assigned EC number0.31880.94050.9903yesno
P58227RF1_THEVONo assigned EC number0.31650.92440.9665yesno
Q8BWY3ERF1_MOUSENo assigned EC number0.74070.98390.9839yesno
Q5U2Q7ERF1_RATNo assigned EC number0.74070.98390.9839yesno
Q6KZ24RF1_PICTONo assigned EC number0.31180.90380.9634yesno
Q9BMM0ERF1_STYLENo assigned EC number0.55680.95650.9393N/Ano
Q9BMM1ERF1_STYMTNo assigned EC number0.55920.95650.9393N/Ano
Q9BMM3ERF1_BLEAMNo assigned EC number0.60710.94730.9495N/Ano
O26964RF1_METTHNo assigned EC number0.30580.89930.9656yesno
Q9U8U5ERF1_TETTHNo assigned EC number0.55470.95190.9563N/Ano
Q5R4C7ERF1_PONABNo assigned EC number0.74070.98390.9839yesno
Q9HKR2RF1_THEACNo assigned EC number0.30990.91990.9640yesno
Q8TXB5RF1_METKANo assigned EC number0.32430.91530.9779yesno
B9LRF2RF1_HALLTNo assigned EC number0.31750.92210.9687yesno
Q9VPH7ERF1_DROMENo assigned EC number0.73680.98390.9817yesno
Q12V98RF1_METBUNo assigned EC number0.30980.91530.9661yesno
P79063ERF1_SCHPONo assigned EC number0.61230.97940.9884yesno
Q9BMX3ERF1_OXYTRNo assigned EC number0.56290.98620.9685N/Ano
O59264RF1_PYRHONo assigned EC number0.32490.88780.9304yesno
Q9BMX0ERF1_DICDINo assigned EC number0.69720.98850.9795yesno
Q9LPV8ERF1Y_ARATHNo assigned EC number0.88010.99080.9976nono
P35615ERF1_XENLANo assigned EC number0.73610.98390.9839N/Ano
P35614ERF1Z_ARATHNo assigned EC number0.89700.99541.0yesno
Q8U0J4RF1_PYRFUNo assigned EC number0.32600.94050.9785yesno
Q5CD84ERF1_LOXSTNo assigned EC number0.51730.98390.9862N/Ano
A5ULL8RF1_METS3No assigned EC number0.32110.91530.9708yesno
Q5CG95ERF1_CRYHONo assigned EC number0.65090.96560.9836N/Ano
Q9V151RF1_PYRABNo assigned EC number0.33240.89470.9444yesno
O29048RF1_ARCFUNo assigned EC number0.31940.91300.9803yesno
Q9NAX8ERF1_TRYBBNo assigned EC number0.54980.97020.9380N/Ano
O59948ERF1_PODASNo assigned EC number0.70440.96330.9678yesno
Q5CD96ERF1_DILMANo assigned EC number0.53700.95420.9564N/Ano
Q5CD97ERF1_DIDNANo assigned EC number0.55580.97480.9748N/Ano
Q9GR88ERF1_POLMINo assigned EC number0.77170.96560.9701N/Ano
Q5CD95ERF1_BLEMUNo assigned EC number0.59760.94730.9495N/Ano
Q9NCP1ERF1_GIAINNo assigned EC number0.52140.98620.9431N/Ano
P62498ERF1_XENTRNo assigned EC number0.73610.98390.9839yesno
Q0VCX5ERF1_BOVINNo assigned EC number0.74070.98390.9839yesno
B6YU52RF1_THEONNo assigned EC number0.32850.93360.9831yesno
P12385ERF1_YEASTNo assigned EC number0.65350.97480.9748yesno
P62495ERF1_HUMANNo assigned EC number0.74070.98390.9839yesno
P62497ERF1_RABITNo assigned EC number0.74070.98390.9839yesno
P62496ERF1_MESAUNo assigned EC number0.74070.98390.9839N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001852001
SubName- Full=Chromosome chr18 scaffold_122, whole genome shotgun sequence; (437 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015835001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (1267 aa)
    ••• 0.531
GSVIVG00038087001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (276 aa)
  •• •  0.517
GSVIVG00017978001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (264 aa)
  •• •  0.515
GSVIVG00037895001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (267 aa)
  •• •  0.514
GSVIVG00028043001
RecName- Full=Ribosomal protein L19; (208 aa)
  •• •  0.506
GSVIVG00023139001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)
• •• •  0.496
GSVIVG00017864001
RecName- Full=Ribosomal protein L19; (183 aa)
  •• •  0.489
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
   ••   0.486
GSVIVG00003445001
SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (156 aa)
  •• •  0.436
GSVIVG00024136001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (265 aa)
  •     0.428

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 1e-155
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 1e-135
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 1e-109
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 3e-43
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 1e-42
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 2e-31
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 1e-11
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 4e-08
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  444 bits (1144), Expect = e-155
 Identities = 169/411 (41%), Positives = 250/411 (60%), Gaps = 5/411 (1%)

Query: 10  NIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQS 69
             E++++KKL++ L+  RG GT +ISL +PP  Q+S V   L DE+ TASNIKS+V R++
Sbjct: 6   MHEMYELKKLLEELKKFRGRGTELISLYIPPDRQISDVVNRLRDEYSTASNIKSKVTRKN 65

Query: 70  VLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNK 129
           VL AI SA QRLK Y K P NGLVL+ G ++   GK KKVT+  EP  PIN  LY CD+K
Sbjct: 66  VLSAIESAMQRLKDYCKTPENGLVLFVGDVLGGGGKTKKVTVVIEPPEPINTFLYRCDSK 125

Query: 130 FHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRF 189
           F+ + L E+LE  D +G IV+D      G L G   EVL + + D+P KH  GGQSA RF
Sbjct: 126 FYLEPLEEMLEDKDLYGLIVLDRIEATIGLLKGKRIEVLKELTSDVPGKHRAGGQSARRF 185

Query: 190 ARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQA 249
            RL  E  H + +K  E A++ ++  A  +  + G++L G    K E  + D     L+ 
Sbjct: 186 ERLIEEAAHEFYKKVGEAASEAFLPIA--KKELKGIILGGPGPTKEEFVEGDYLHHELKK 243

Query: 250 KILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDT 309
           K+L +VDVSY GE+G  + IE + ++L +V +++EK+L+ ++F+E+++D+G  V+G ++ 
Sbjct: 244 KVLGLVDVSYTGESGLRELIEKAEDALKDVDYVREKKLMEEFFKELAKDSGLAVYGEEEV 303

Query: 310 LKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEV 369
            +AL+MGAVDTL+V E+L+  R   K    G        RE E  Q  FR     +E+E 
Sbjct: 304 REALEMGAVDTLLVSEDLEKERVTYKCPTCGY-ENLKSKREFE--QKRFRCPECGSEMEE 360

Query: 370 QEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420
            E S L++  A      G  +E +++ + EG+Q  + FGG+  ILRY+ D+
Sbjct: 361 VEVSDLVDELAELAEESGAKVEIISDDTDEGAQLLKAFGGLAAILRYRTDV 411

Length = 411
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
PRK04011411 peptide chain release factor 1; Provisional 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
KOG0688431 consensus Peptide chain release factor 1 (eRF1) [T 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.95
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.89
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 99.5
PF10116138 Host_attach: Protein required for attachment to ho 97.33
PRK07714100 hypothetical protein; Provisional 93.22
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 93.12
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 93.03
PRK0728398 hypothetical protein; Provisional 92.88
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 92.26
PRK0668382 hypothetical protein; Provisional 91.23
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 90.67
PTZ00106108 60S ribosomal protein L30; Provisional 90.38
PRK0101899 50S ribosomal protein L30e; Reviewed 90.36
PRK05583104 ribosomal protein L7Ae family protein; Provisional 89.78
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 89.63
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 89.18
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 88.64
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 88.49
PRK09190220 hypothetical protein; Provisional 86.94
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 85.16
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 82.19
PRK06266178 transcription initiation factor E subunit alpha; V 80.13
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information 
Probab=100.00  E-value=2.5e-92  Score=714.45  Aligned_cols=403  Identities=37%  Similarity=0.638  Sum_probs=382.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhhhhhhchhhhhhhhhcccchhHHHHHHHhhhccccCCCc
Q 013764           12 EIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNG   91 (437)
Q Consensus        12 ~~~~~~k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~~~~G   91 (437)
                      ++|+|||+|++|.+++|+||++|||||||+++++++.++|++|+++|+|||||+||+||++|++++++||+++.++|+||
T Consensus         1 ~~~~~k~~~~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~a~niks~~~r~~v~~ai~~~~~rlk~~~~~p~nG   80 (403)
T TIGR03676         1 EKYEFKKLLEELKKKKGRGTELISLYIPPDKQISDVVNQLRDEYSQAANIKSKQTRKNVQSAIESIMQRLKLYKKPPENG   80 (403)
T ss_pred             CcchHHHHHHHHHhCcCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhccCCCCCCe
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCeEEEEEEE
Q 013764           92 LVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF  171 (437)
Q Consensus        92 l~~f~g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~~~i  171 (437)
                      +++|||.+..++|..++||++++||+|+++++|.||+.||++||.++++++.++++|+||+++|.|+++.|+.++++.++
T Consensus        81 lv~f~g~~~~~~~~~~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~~~~~~g~VvvD~~~A~i~~l~g~~~e~~~~i  160 (403)
T TIGR03676        81 LVLFAGMVPTGGGTEKMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLEEKDVYGLIVLDRREATIGLLKGKRIEVLKEL  160 (403)
T ss_pred             EEEEEeeecCCCCceeEEEEEEeCCCceEEEEecCCChHHHHHHHHHhcCCCCEEEEEEecCceEEEEEcCCEEEEEEEE
Confidence            99999999887788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhhhcce
Q 013764          172 SVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQAKI  251 (437)
Q Consensus       172 ~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l~~~v  251 (437)
                      +.++|+||++||||+.||+|++++++++||++|++.+.++|..  ..+.++++||||||+++++.|.+.++|++++++++
T Consensus       161 ~~~vp~K~~~GGqS~~Rf~R~~e~~~~~f~~~Vae~~~~~f~~--~~~~~v~~lILaGpg~~K~~f~~~~~L~~~l~~kv  238 (403)
T TIGR03676       161 TSGVPGKHRAGGQSARRFERLIEIAAHEFYKRVGEAANEAFLP--LKDKKLKGILIGGPGPTKEEFAEGDYLHHELKKKI  238 (403)
T ss_pred             EeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccEEEEeCCHHHHHHHhhhhhhhHHHHhhE
Confidence            9999999998999999999999999999999999999998753  11236999999999999999998778999999999


Q ss_pred             eEEEECCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCCcee
Q 013764          252 LKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITR  331 (437)
Q Consensus       252 i~~v~~s~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~~~~  331 (437)
                      +.++++|+++++|++|+++++.++|++.++++|.++|++|++++++++|++|||+++|.+|+++|||+||||+|++...|
T Consensus       239 i~~vd~s~~~~~Gl~Evl~~~~~~L~~~k~~~E~~lle~f~~el~~d~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r  318 (403)
T TIGR03676       239 LGLFDVSYTGESGLRELVEKAEDLLKDLELMKEKKLMERFFKELVKDGGLAAYGEEEVRKALEMGAVDTLLISEDLRKIR  318 (403)
T ss_pred             EEEEecCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHhCCCcEEEEEcccccee
Confidence            88999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             EEEEcCCCCcEEEEeeccchhcccCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhccccccEE
Q 013764          332 YVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIG  411 (437)
Q Consensus       332 ~~~r~~~~~~~~~~~~~~~~~~~r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~~~gGIa  411 (437)
                      +.|+|++|+...+.++.+.+..  ....||.||+++++++..+++++|++.|+++||+|+|||++|++|+||+++|||||
T Consensus       319 ~~~rc~~c~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ve~L~e~a~~~Ga~V~~iS~~~eeG~ql~~~fGGIa  396 (403)
T TIGR03676       319 VTFKCPNCGYEEEKTVKPEEGD--KSEACPKCGSELEIVEEEDIIEELSELAEESGAKVEIISTDTEEGEQLLKAFGGIA  396 (403)
T ss_pred             EEEEcCCCCcceeeeccccccc--ccccCcccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcCCcEE
Confidence            9999999998877777666542  22669999999999889999999999999999999999999999999768999999


Q ss_pred             EEeeeec
Q 013764          412 GILRYQL  418 (437)
Q Consensus       412 AiLRy~~  418 (437)
                      ||||||+
T Consensus       397 AiLRy~i  403 (403)
T TIGR03676       397 AILRYRV  403 (403)
T ss_pred             EEEecCC
Confidence            9999996

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK09190 hypothetical protein; Provisional Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1dt9_A437 The Crystal Structure Of Human Eukaryotic Release F 1e-179
3e1y_A451 Crystal Structure Of Human Erf1ERF3 COMPLEX Length 1e-179
3j2k_6411 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 1e-178
3e20_C441 Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt 1e-149
2hst_A143 Solution Structure Of The Middle Domain Of Human Eu 8e-60
2llx_A150 Solution Structure Of The N-Terminal Domain Of Huma 2e-54
2lgt_A144 Backbone 1h, 13c, And 15n Chemical Shift Assignment 1e-52
2ktu_A170 Human Erf1 C-Domain, "closed" Conformer Length = 17 1e-50
3agk_A373 Crystal Structure Of Archaeal Translation Terminati 3e-37
3ir9_A166 C-Terminal Domain Of Peptide Chain Release Factor F 8e-11
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 6e-04
>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor Erf1-Mechanism Of Stop Codon Recognition And Peptidyl-Trna Hydrolysis Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  624 bits (1609), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/432 (70%), Positives = 348/432 (80%), Gaps = 2/432 (0%)
Query: 3   DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIK 62
           D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIK
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63
Query: 63  SRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINAS 122
           SRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN S
Sbjct: 64  SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS 123
Query: 123 LYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRG 182
           LYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRG
Sbjct: 124 LYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRG 183
Query: 183 GQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDM 242
           GQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GLVLAGSADFKTELSQSDM
Sbjct: 184 GQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDM 241
Query: 243 FDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKY 302
           FD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY
Sbjct: 242 FDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKY 301
Query: 303 VFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSA 362
            FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  
Sbjct: 302 CFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKE 361
Query: 363 TSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS 422
           T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D + 
Sbjct: 362 TGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQG 421
Query: 423 FDEFSDDGEIYD 434
            +    D E +D
Sbjct: 422 MEYQGGDDEFFD 433
>pdb|3E1Y|A Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 451 Back     alignment and structure
>pdb|3J2K|6 Chain 6, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 411 Back     alignment and structure
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 441 Back     alignment and structure
>pdb|2HST|A Chain A, Solution Structure Of The Middle Domain Of Human Eukaryotic Translation Termination Factor Erf1 Length = 143 Back     alignment and structure
>pdb|2LLX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Polypeptide Chain Release Factor Erf1 Length = 150 Back     alignment and structure
>pdb|2LGT|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For Qfm(Y)f Length = 144 Back     alignment and structure
>pdb|2KTU|A Chain A, Human Erf1 C-Domain, "closed" Conformer Length = 170 Back     alignment and structure
>pdb|3AGK|A Chain A, Crystal Structure Of Archaeal Translation Termination Factor, Arf1 Length = 373 Back     alignment and structure
>pdb|3IR9|A Chain A, C-Terminal Domain Of Peptide Chain Release Factor From Methanosarcina Mazei. Length = 166 Back     alignment and structure
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 1e-151
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 1e-147
3agk_A373 Peptide chain release factor subunit 1; translatio 1e-104
2vgn_A386 DOM34; translation termination factor, protein bio 1e-68
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 2e-67
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 8e-63
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 2e-59
3ir9_A166 Peptide chain release factor subunit 1; structural 1e-57
3agj_B358 Protein pelota homolog; GTP binding, translation-h 1e-55
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 1e-52
2qi2_A347 Pelota, cell division protein pelota related prote 1e-48
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 5e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
 Score =  435 bits (1118), Expect = e-151
 Identities = 322/438 (73%), Positives = 367/438 (83%), Gaps = 3/438 (0%)

Query: 1   MADG-QETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTAS 59
           MAD     D+N+EIWKIKKLIK+LEAARGNGTSMISLI+PP+DQ+SRV KML DEFGTAS
Sbjct: 1   MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60

Query: 60  NIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPI 119
           NIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PI
Sbjct: 61  NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120

Query: 120 NASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKH 179
           N SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180

Query: 180 GRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQ 239
           GRGGQSALRFARLRMEKRHNYVRK AE A Q +I+    + NV+GLVLAGSADFKTELSQ
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIS--GDKVNVAGLVLAGSADFKTELSQ 238

Query: 240 SDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDT 299
           SDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDT
Sbjct: 239 SDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDT 298

Query: 300 GKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFR 359
           GKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F 
Sbjct: 299 GKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFT 358

Query: 360 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLD 419
           D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D
Sbjct: 359 DKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418

Query: 420 MRSFDEFSDDGEIYDDSE 437
            +  +    D E +D  +
Sbjct: 419 FQGMEYQGGDDEFFDLDD 436
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 100.0
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.95
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 93.72
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 92.46
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 91.85
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 91.74
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 91.69
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 91.63
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 91.1
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 90.88
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 90.2
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 90.01
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 89.8
1w41_A101 50S ribosomal protein L30E; electrostatic interact 89.71
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 89.7
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 89.14
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 88.7
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 86.67
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 86.22
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 85.65
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=5.6e-94  Score=734.95  Aligned_cols=423  Identities=62%  Similarity=1.029  Sum_probs=243.1

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhhhhhhchhhhhhhhhcccchhHHHHHHHhhhccccC
Q 013764            9 KNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVP   88 (437)
Q Consensus         9 ~~~~~~~~~k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~~   88 (437)
                      +++++|+|||+|++|.+++|+||++|||||||+++|+++.++|++|+++|+|||||+||++++++++++++||+++.++|
T Consensus        15 ~~~~~~~~k~~i~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~~v~~ai~s~~~rlkl~~~vp   94 (441)
T 3e20_C           15 KAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVP   94 (441)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSSCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCSSCT
T ss_pred             hHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhccchhhHHHHHHHHHhhhccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcCCCcEEEEEEeCCceEEEEEecCeEEEE
Q 013764           89 PNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL  168 (437)
Q Consensus        89 ~~Gl~~f~g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~~~~~~vvvvd~~~A~i~~~~g~~~~~~  168 (437)
                      ++|+++|||.+..+++.+.+||++|+||+||++++|+||+.|+++||.++++++.++++|+||+++|.++++.|+.++++
T Consensus        95 ~~g~v~~~G~~~~e~~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~~~evl  174 (441)
T 3e20_C           95 DNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVL  174 (441)
T ss_dssp             TSCCEEEEEEECCGGGCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-----------------------------
T ss_pred             CCCEEEEeceeeccCCceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecCeEEEE
Confidence            99999999999877777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcceEEEecChhhHHHhcccccCChhhh
Q 013764          169 HKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLVLAGSADFKTELSQSDMFDPRLQ  248 (437)
Q Consensus       169 ~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~va~~l~~~~~~~~~~~~~~~~liiaGp~~~k~~f~~~~~l~~~l~  248 (437)
                      ++++.++|+||++||||+.||+|++++++++||++|++.+.++|.+  .+..++++||||||+++++.|.++++++++++
T Consensus       175 ~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~  252 (441)
T 3e20_C          175 QRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFIT--DDKPNVAGIVLAGSADFKTELGQSDLFDQRLQ  252 (441)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCcCEEEEECCHHHHHHHHHhcccCHHHH
Confidence            9999999999988999999999999999999999999999999863  11357999999999999999998878999999


Q ss_pred             cceeEEEECCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccCCCcEEECHHHHHHHHHhCCccEEEeecCCC
Q 013764          249 AKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLD  328 (437)
Q Consensus       249 ~~vi~~v~~s~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~~~~~~~~a~yG~~~V~~Al~~GaV~tLlV~d~l~  328 (437)
                      +++++++++|+++++|++|++++++++|+++++++|.++|++|++++++++++||||+++|.+|+++|||+||||+|++.
T Consensus       253 ~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~  332 (441)
T 3e20_C          253 SRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLD  332 (441)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred             hheEEEEECCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccc
Confidence            99877899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEcCCCCcEEEEeeccchhcc---cCcccCCCccccchhcccccHHHHHHHHHHhcCCEEEEecCCCchhhhhcc
Q 013764          329 ITRYVLKNTVTGEIVIKHLNREQETN---QNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCR  405 (437)
Q Consensus       329 ~~~~~~r~~~~~~~~~~~~~~~~~~~---r~~~~cp~~g~~~~~~~~~dvve~Lve~a~~~ga~V~ivs~~~e~G~q~L~  405 (437)
                      .+|+++||++|.. .+.++.|++..+   ++.+.||.||.+++++++.+++|+|++.|+++||+|+|||+.|++|+||++
T Consensus       333 ~~r~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~~  411 (441)
T 3e20_C          333 MIRYEFKNSEGNP-VITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVK  411 (441)
T ss_dssp             CEEC-----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHHH
T ss_pred             cceeEEECCCCce-EEEecCccccccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHHH
Confidence            9999999998753 345666665322   445789999999999999999999999999999999999999999999889


Q ss_pred             ccccEEEEeeeecCccCccCcCCCCCCCCCC
Q 013764          406 GFGGIGGILRYQLDMRSFDEFSDDGEIYDDS  436 (437)
Q Consensus       406 ~~gGIaAiLRy~~~~~~~~~~~~~~~~~~~~  436 (437)
                      +|||||||||||+++++++++  ++|.|||.
T Consensus       412 ~fgGIaaiLRy~~~~~~~~~~--~~~~~~~~  440 (441)
T 3e20_C          412 GFGGIGAVMRYQLDLSMLDPE--SDEFYSDS  440 (441)
T ss_dssp             TSTTEEEECSSCCCCCSSCSS--CCC-----
T ss_pred             cCCcEEEEEeccCChHHhccc--cccccccC
Confidence            999999999999998887763  36678875
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d1dt9a3138 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic 9e-76
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 1e-59
d1dt9a1134 c.55.4.2 (A:143-276) Middle domain of eukaryotic p 2e-57
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 2e-29
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 9e-25
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 5e-24
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 3e-17
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 2e-12
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
superfamily: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
family: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
domain: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  230 bits (589), Expect = 9e-76
 Identities = 112/135 (82%), Positives = 123/135 (91%)

Query: 6   ETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRV 65
             D+N+EIWKIKKLIK+LEAARGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRV
Sbjct: 3   AADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRV 62

Query: 66  NRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYL 125
           NR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYL
Sbjct: 63  NRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYL 122

Query: 126 CDNKFHTDALNELLE 140
           CDNKFHT+AL  LL 
Sbjct: 123 CDNKFHTEALTALLS 137
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 100.0
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 100.0
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.96
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.95
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.95
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.92
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.86
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.7
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.45
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 99.38
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 93.19
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 90.89
d1xbia1115 Ribosomal protein L7ae {Archaeon Methanococcus jan 90.53
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 90.42
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 89.66
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 89.57
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 88.73
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 88.02
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 87.23
d2alea1126 Small nuclear ribonucleoprotein-associated protein 85.87
d2ozba1125 Spliceosomal 15.5kd protein {Human (Homo sapiens) 83.21
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
superfamily: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
family: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
domain: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=249.33  Aligned_cols=134  Identities=84%  Similarity=1.279  Sum_probs=129.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhcCCCcceEEEEcCCCCCHHHHHhhhhhhhhhchhhhhhhhhcccchhHHHHHHHhhhcccc
Q 013764            8 DKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKV   87 (437)
Q Consensus         8 ~~~~~~~~~~k~l~~l~~~~g~~~~~vsly~~~~~d~~~v~nll~~d~~~a~~ir~k~~r~~~~~~~~~~~~~l~l~~~~   87 (437)
                      ++++++|+|||+|++|.+++|+||++|||||||+++++++.|+|++|+++|+|||||+||++|++|++++++||+++.++
T Consensus         5 ~~~ie~~k~kk~i~~L~~~kG~gT~lISlyIPp~~~I~~v~~~L~~E~g~AsNIKsk~tR~~V~~Ai~s~~~rLk~y~k~   84 (138)
T d1dt9a3           5 DRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKV   84 (138)
T ss_dssp             THHHHHHHHHHHHHHHHTCCCSSSCEEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeceeecCCCceeEEEEEeecCCCceeeeeeccCccchHHHHHhhcC
Q 013764           88 PPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLES  141 (437)
Q Consensus        88 ~~~Gl~~f~g~~~~~~~~~~~~t~~l~~~~pv~~~k~~~~~~~~l~~L~~a~~~  141 (437)
                      |+||+++|||.+..++|...+.+++++||.|+..+.|+|++.||++||++|+++
T Consensus        85 P~NGLvif~G~v~~~~gkek~~~~~iePp~pi~~~~Y~CD~~F~~e~L~~mLed  138 (138)
T d1dt9a3          85 PPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSD  138 (138)
T ss_dssp             CTTCEEEEEEEEECGGGCEEEEEEEECCSCCTTCCEEEEESSCCCHHHHHHCCC
T ss_pred             CCCcEEEEEeEEEccCCceEEEEEEecCCCcccceEEEcCCeeehHHHHHHhcC
Confidence            999999999999888888899999999999999999999999999999999863
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure