BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013766
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 154/256 (60%), Gaps = 10/256 (3%)
Query: 180 EYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTV 239
EY+ DIY + ++ E++ V P Y+ + ++ MR ILIDWL++V KF L++ET+Y+TV
Sbjct: 5 EYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 63
Query: 240 NLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEK 299
++IDRF+ V +K LQLVGVTAM +A KYEE+ P + D ++D Y++ ++ ME
Sbjct: 64 SIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 123
Query: 300 LMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAA 359
++ L F + P P F+RR K + D + L+ +L+EL +++Y+M+ FPPS +AA
Sbjct: 124 KILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 183
Query: 360 AVYTAQCTLSGFKQWSKTSEWYTSYSEEQLL----ECSRLMVIFHQKAGTGKLTGVHRKY 415
A A L +W+ T + Y SY+EE LL ++ +V+ +Q G K V KY
Sbjct: 184 AFSLALKILDN-GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQ--GLTKHMTVKNKY 240
Query: 416 STSKFGYAAKTRLPNF 431
+TSK +A + LP
Sbjct: 241 ATSK--HAKISTLPQL 254
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 152/256 (59%), Gaps = 10/256 (3%)
Query: 180 EYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTV 239
EY+ DIY + ++ E V P Y+ + ++ MR ILIDWL++V KF L++ET+Y+TV
Sbjct: 3 EYVKDIYAYLRQLEEEQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 61
Query: 240 NLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEK 299
++IDRF+ V +K LQLVGVTAM +A KYEE+ P + D ++D Y++ ++ ME
Sbjct: 62 SIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 121
Query: 300 LMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAA 359
++ L F + P P F+RR K + D + L+ +L+EL +++Y+M+ FPPS +AA
Sbjct: 122 KILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 181
Query: 360 AVYTAQCTLSGFKQWSKTSEWYTSYSEEQLL----ECSRLMVIFHQKAGTGKLTGVHRKY 415
A A L +W+ T + Y SY+EE LL ++ +V+ +Q G K V KY
Sbjct: 182 AFCLALKILDN-GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQ--GLTKHMTVKNKY 238
Query: 416 STSKFGYAAKTRLPNF 431
+TSK +A + LP
Sbjct: 239 ATSK--HAKISTLPQL 252
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 4 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D YS+K+VL M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 123
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PSL
Sbjct: 124 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 183
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C +V HQ KA +
Sbjct: 184 IAGAAFHLALYTVTG-QSWPESLAQQTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIR 239
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 240 EKYKHSKY 247
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D YS+K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PSL
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C +V HQ KA +
Sbjct: 181 IAGAAFHLALYTVTG-QSWPESLAQQTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIR 236
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 237 EKYKHSKY 244
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D YS+K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PSL
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C +V HQ KA +
Sbjct: 181 IAGAAFHLALYTVTG-QSWPESLAQQTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIR 236
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 237 EKYKHSKY 244
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ +A +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ +A +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ +A +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ +A +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ +A +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L C ++ HQ +A +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLVQKTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 8 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 67
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 68 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 127
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 128 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 187
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 188 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 243
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 244 EKYKNSKY 251
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E C M+ HQ KA +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLIRKTGYTLETSKPC---MLDLHQTYLKAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 4 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 123
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 124 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 183
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 184 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 239
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 240 EKYKNSKY 247
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 183 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 238
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 239 EKYKNSKY 246
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 183 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 238
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 239 EKYKNSKY 246
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 2 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 61
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 62 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 121
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 122 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 181
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 182 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 237
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 238 EKYKNSKY 245
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 181 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 236
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 237 EKYKNSKY 244
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+A AA + A T++G + W ++ T Y+ E L C ++ HQ KA +
Sbjct: 181 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIR 236
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 237 EKYKNSKY 244
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 147/246 (59%), Gaps = 9/246 (3%)
Query: 180 EYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTV 239
+Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L V
Sbjct: 1 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 240 NLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEK 299
N IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL ME
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 120
Query: 300 LMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSLLA 357
L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS++A
Sbjct: 121 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 180
Query: 358 AAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVHRK 414
AA + A T++G + W ++ T Y+ E L C ++ HQ KA + K
Sbjct: 181 GAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREK 236
Query: 415 YSTSKF 420
Y SK+
Sbjct: 237 YKNSKY 242
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
V +Y +DI+ + ++ E YM +Q DI MR IL+DWL+EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
VN IDRFL+ V+R KLQLVG AMLLA K+EE+ P V + + I+D Y++K+VL M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKLMVNTLQFNMSVPTPYVFMRR-FLKASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
E L++ L F+++ PT F+ + FL ++ K+E L+ FL EL L++ + LK+ PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ---KAGTGKLTGVH 412
+AAAA + A T++G + W ++ T Y+ E L +++ HQ KA +
Sbjct: 185 IAAAAFHLALYTVTG-QSWPESLIRKTGYTLESL---KPMLLDLHQTYLKAPQHAQQSIR 240
Query: 413 RKYSTSKF 420
KY SK+
Sbjct: 241 EKYKNSKY 248
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 107/192 (55%), Gaps = 12/192 (6%)
Query: 183 DDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLI 242
++++ E + +++ Q + +MR IL+DWL+EV ++L ET YL +
Sbjct: 19 EEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFF 78
Query: 243 DRFLTVQP-VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLM 301
DR++ Q VV+ LQL+G++++ +A K EE+ P + ++D A S E+L ME ++
Sbjct: 79 DRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMI 138
Query: 302 VNTLQFNMSVPTPYVFMRRFLKASQSDKKLELL------SFF-----LIELCLVEYEMLK 350
+ L++ +S T ++ +++ + + E+L F L++LC+++ + L+
Sbjct: 139 MKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLE 198
Query: 351 FPPSLLAAAAVY 362
FP +LAA+A+Y
Sbjct: 199 FPYGILAASALY 210
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 197 YVP--PNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRK 254
YVP + Q +I MR +L W++EV + EE L +N +DR+L+ P +
Sbjct: 52 YVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA 111
Query: 255 KLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTP 314
+LQL+G MLLA K E + +E L + +D A S +++ D E L++ L+++++
Sbjct: 112 QLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIA 171
Query: 315 YVFMRRFLKASQSDKKLELL----SFFLIELCLVEYEMLKFPPSLLAAAAVYTA-----Q 365
+ F+ L + + L + + LC +Y +PPS++A ++ A
Sbjct: 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA 231
Query: 366 CTLSG 370
C++SG
Sbjct: 232 CSMSG 236
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 183 DDIYNFYKKAESSGYVPPNYM-AQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNL 241
D + KAE + +Y Q ++ MR I+ W++EV + + EE L +N
Sbjct: 25 DRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNY 84
Query: 242 IDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLM 301
+DRFL+++PV + +LQL+G T M +A K +E E L + +D + +E+L ME L+
Sbjct: 85 LDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLL 144
Query: 302 VNTLQFNMSVPTPYVFMRRFL----KASQSDKKLELLSFFLIELCLVEYEMLKFPPSL 355
VN L++N++ TP+ F+ FL +A ++ + + + + LC + + + PPS+
Sbjct: 145 VNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 213 MRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEE 272
MR I+ W++EV + + EE L +N +DRFL+++PV + +LQL+G T M +A K +E
Sbjct: 42 MRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE 101
Query: 273 VSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFL----KASQSD 328
E L + +D + +E+L ME L+VN L++N++ TP+ F+ FL +A ++
Sbjct: 102 TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENK 161
Query: 329 KKLELLSFFLIELCLVEYEMLKFPPSL 355
+ + + + LC + + + PPS+
Sbjct: 162 QIIRKHAQTFVALCATDVKFISNPPSM 188
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 221 LIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVED 280
+ +V + L +TL + RF + + G + LA K EE +D
Sbjct: 48 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKC-KD 106
Query: 281 LI-----LISDKAYS------RKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK 329
+I L++D + ++EV+ +E++++ T++F++ V PY F+ ++ K + DK
Sbjct: 107 IIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK 166
Query: 330 ----KLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTA 364
KL +++ + L L++ P ++A A +Y A
Sbjct: 167 NKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLA 205
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%)
Query: 206 QFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAML 265
Q ++ R IL+ W+ + FEL + L+V+++DR+L + +K LQ +G +L
Sbjct: 44 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 103
Query: 266 LACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFN 308
+ K V V L +S ++ E+++ EK ++ L+++
Sbjct: 104 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 146
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%)
Query: 206 QFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAML 265
Q ++ R IL+ W+ + FEL + L+V+++DR+L + +K LQ +G +L
Sbjct: 23 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 82
Query: 266 LACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFN 308
+ K V V L +S ++ E+++ EK ++ L+++
Sbjct: 83 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 125
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%)
Query: 206 QFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAML 265
Q + MR +L W+ V ++ L + L +NL+DR L ++ V ++ Q G +L
Sbjct: 43 QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLL 102
Query: 266 LACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQF 307
+A K ++ L + ++SR+E++D EK ++ L +
Sbjct: 103 VASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAW 144
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 164 VMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSG 196
+ DID E+ PQ +V+YI D + Y+ SSG
Sbjct: 67 IPDIDAEKLMCPQEIVDYIADKKDVYESGPSSG 99
>pdb|1XM7|A Chain A, The Crystal Structure Of The Protein Of Unknown Function
Aq665 From Aquifex Aeolicus
pdb|1XM7|B Chain B, The Crystal Structure Of The Protein Of Unknown Function
Aq665 From Aquifex Aeolicus
Length = 195
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 173 KNPQAVVEYIDDIYNFYKKAESSG 196
K+ +++ EY D+IY+FYK E G
Sbjct: 83 KDKESLKEYFDEIYDFYKIIEHKG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,097,169
Number of Sequences: 62578
Number of extensions: 456919
Number of successful extensions: 1361
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 38
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)