Query 013766
Match_columns 437
No_of_seqs 286 out of 1861
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 3.2E-55 1.1E-59 426.7 25.4 255 178-433 3-259 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 2.9E-54 9.9E-59 422.1 20.9 255 176-432 1-257 (269)
3 1w98_B Cyclin E, G1/S-specific 100.0 2.8E-47 9.5E-52 375.3 27.1 255 172-435 8-277 (283)
4 1g3n_C V-cyclin; cyclin-depend 100.0 9.1E-48 3.1E-52 373.5 23.1 236 171-409 10-255 (257)
5 2f2c_A Cyclin homolog, V-cycli 100.0 3E-47 1E-51 369.3 24.7 231 170-403 10-249 (254)
6 3g33_B CCND3 protein; Ser/Thr 100.0 1.1E-45 3.9E-50 367.7 24.6 230 172-403 30-268 (306)
7 1f5q_B Gamma herpesvirus cycli 100.0 5.4E-45 1.9E-49 353.3 20.4 223 171-403 13-243 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 3.6E-44 1.2E-48 350.8 22.8 230 172-404 17-259 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 9.6E-36 3.3E-40 288.6 19.0 206 207-416 24-253 (257)
10 3rgf_B Cyclin-C; protein kinas 100.0 5.3E-35 1.8E-39 288.0 18.4 206 210-419 39-263 (285)
11 2i53_A Cyclin K; cell cycle, t 100.0 1.1E-34 3.8E-39 280.9 19.5 198 206-404 33-253 (258)
12 1zp2_A RNA polymerase II holoe 100.0 1.8E-33 6E-38 269.4 18.4 187 214-404 28-222 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 4.2E-34 1.4E-38 290.0 11.7 202 208-413 32-257 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 2E-31 6.9E-36 266.9 18.8 203 211-414 54-276 (323)
15 1c9b_A General transcription f 100.0 2E-27 6.8E-32 223.0 21.8 186 212-401 3-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 9.2E-24 3.1E-28 196.9 21.7 185 212-400 7-193 (200)
17 3k7a_M Transcription initiatio 99.8 1.2E-20 4.2E-25 190.2 7.8 183 214-400 126-320 (345)
18 4bbr_M Transcription initiatio 99.6 2.3E-15 7.9E-20 151.7 9.1 182 215-400 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 3.6E-06 1.2E-10 82.0 11.1 106 217-325 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 97.4 0.00063 2.2E-08 62.4 9.3 89 219-310 110-198 (200)
21 1c9b_A General transcription f 96.2 0.033 1.1E-06 51.0 11.2 86 314-400 8-93 (207)
22 4bbr_M Transcription initiatio 94.0 0.23 8E-06 49.4 10.2 89 312-401 127-215 (345)
23 1zp2_A RNA polymerase II holoe 92.8 0.8 2.7E-05 42.6 11.2 86 314-400 31-125 (235)
24 3k7a_M Transcription initiatio 91.9 0.13 4.4E-06 51.2 4.6 87 314-401 129-215 (345)
25 3h4c_A Transcription factor TF 91.3 5.6 0.00019 36.5 14.2 155 215-375 13-176 (260)
26 2ivx_A Cyclin-T2; transcriptio 90.1 1 3.5E-05 42.3 8.8 87 219-305 148-238 (257)
27 2b9r_A Human cyclin B1; cell c 90.0 2.2 7.6E-05 40.5 11.2 86 315-400 42-129 (269)
28 2i53_A Cyclin K; cell cycle, t 88.7 1.3 4.4E-05 41.6 8.4 88 219-306 153-250 (258)
29 2pk2_A Cyclin-T1, protein TAT; 87.9 0.98 3.4E-05 45.0 7.3 87 219-305 155-245 (358)
30 2w96_A G1/S-specific cyclin-D1 87.7 3.5 0.00012 39.0 10.8 84 317-400 63-148 (271)
31 2cch_B Cyclin A2, cyclin-A; co 87.7 2.5 8.5E-05 39.8 9.7 85 316-400 44-130 (260)
32 3rgf_B Cyclin-C; protein kinas 87.5 4 0.00014 39.0 11.2 86 315-400 47-148 (285)
33 1g3n_C V-cyclin; cyclin-depend 87.0 2.9 0.0001 39.2 9.8 85 316-400 56-142 (257)
34 2f2c_A Cyclin homolog, V-cycli 86.8 3.3 0.00011 38.8 9.9 87 315-401 56-144 (254)
35 3g33_B CCND3 protein; Ser/Thr 84.8 4.5 0.00015 39.2 10.1 84 317-400 77-162 (306)
36 1w98_B Cyclin E, G1/S-specific 84.6 6.5 0.00022 37.5 11.0 85 316-400 55-142 (283)
37 2pmi_B PHO85 cyclin PHO80, ami 84.2 6.7 0.00023 38.0 10.8 89 312-400 75-166 (293)
38 1jkw_A Cyclin H; cell cycle, c 82.9 9.4 0.00032 37.2 11.6 84 316-400 62-154 (323)
39 3m03_A ORC6, origin recognitio 78.1 11 0.00039 30.2 8.4 79 221-304 6-90 (95)
40 1f5q_B Gamma herpesvirus cycli 70.4 22 0.00076 33.3 9.8 84 317-400 55-140 (252)
41 2qdj_A Retinoblastoma-associat 41.6 68 0.0023 31.0 7.8 66 221-286 6-74 (304)
42 3v7d_A Suppressor of kinetocho 36.7 30 0.001 30.3 4.1 55 228-294 99-156 (169)
43 2ast_A S-phase kinase-associat 35.8 38 0.0013 29.2 4.5 54 229-294 93-149 (159)
44 2p1m_A SKP1-like protein 1A; F 35.6 35 0.0012 29.5 4.3 54 229-294 92-148 (160)
45 1fs1_B SKP1, cyclin A/CDK2-ass 22.9 76 0.0026 26.7 4.1 46 228-284 87-135 (141)
46 3m03_A ORC6, origin recognitio 22.6 1.9E+02 0.0067 22.9 6.1 52 350-402 42-93 (95)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.2e-55 Score=426.66 Aligned_cols=255 Identities=38% Similarity=0.590 Sum_probs=245.7
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchh
Q 013766 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQ 257 (437)
Q Consensus 178 ~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lq 257 (437)
|+||++|||.||++.|.++.+.++|+..|++|++.||.++++||++++..|+++++|+++|++|+|||+++..+.+.++|
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq 82 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ 82 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcH-HHHHHHH
Q 013766 258 LVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK-KLELLSF 336 (437)
Q Consensus 258 Lva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~-~l~~la~ 336 (437)
++|+||||||||+||..+|++++|+.++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+. ++..+|+
T Consensus 83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~ 162 (260)
T 2cch_B 83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM 162 (260)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998665 8899999
Q ss_pred HHHHHHHcccc-ccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHHHhcCCCCcchhhccc
Q 013766 337 FLIELCLVEYE-MLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKY 415 (437)
Q Consensus 337 ~llelsl~d~~-~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~~~~~l~~i~~KY 415 (437)
+++++++.++. ++.|+||.||+|||++|+..++. +.|+..+..++||++++|.+|++.|..++.+....++++|++||
T Consensus 163 ~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky 241 (260)
T 2cch_B 163 FLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241 (260)
T ss_dssp HHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHH
T ss_pred HHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999 99999999999999999988765 78999999999999999999999999999988888899999999
Q ss_pred CCcccCccccCCCchhhh
Q 013766 416 STSKFGYAAKTRLPNFLL 433 (437)
Q Consensus 416 ss~kf~~va~~~~~~~l~ 433 (437)
++++|+.||+++||+.|.
T Consensus 242 ~~~~~~~vs~~~~~~~~~ 259 (260)
T 2cch_B 242 KNSKYHGVSLLNPPETLN 259 (260)
T ss_dssp TSGGGTTGGGSCCCSCCC
T ss_pred CcccccceeCCCCcccCC
Confidence 999999999999998763
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.9e-54 Score=422.09 Aligned_cols=255 Identities=36% Similarity=0.633 Sum_probs=238.6
Q ss_pred cchhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccc
Q 013766 176 QAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKK 255 (437)
Q Consensus 176 ~~~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~ 255 (437)
++|+||++|||+||++.|.++.++++|+..| +++++||.++++||++++.+|+++++|+++|++|||||+++..+.+.+
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5789999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHHHHHHH
Q 013766 256 LQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLS 335 (437)
Q Consensus 256 lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~l~~la 335 (437)
+|++|+||||||||+||..+|+++||+.++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++.+.++..+|
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a 159 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLA 159 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHHHhcCC--CCcchhhc
Q 013766 336 FFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGT--GKLTGVHR 413 (437)
Q Consensus 336 ~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~~~--~~l~~i~~ 413 (437)
++++++++.++.++.|+||.||+|||++|+..++. ..|...+..++||++++|.+|++.|.+++.+... .++++|++
T Consensus 160 ~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~-~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~ 238 (269)
T 2b9r_A 160 KYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN-GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKN 238 (269)
T ss_dssp HHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC-CCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHH
T ss_pred HHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 99999999999999999999999999999987765 5899999999999999999999999999877654 48899999
Q ss_pred ccCCcccCccccCCCchhh
Q 013766 414 KYSTSKFGYAAKTRLPNFL 432 (437)
Q Consensus 414 KYss~kf~~va~~~~~~~l 432 (437)
||++++|+.||+++|++-.
T Consensus 239 Ky~~~~~~~vs~~~~~~~~ 257 (269)
T 2b9r_A 239 KYATSKHAKISTLPQLNSA 257 (269)
T ss_dssp HTTSGGGTTGGGSSCCSGG
T ss_pred HhcchhhCcccCCCCCChH
Confidence 9999999999999987643
No 3
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.8e-47 Score=375.32 Aligned_cols=255 Identities=25% Similarity=0.446 Sum_probs=232.2
Q ss_pred CCCccchhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhcc-Cc
Q 013766 172 KKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTV-QP 250 (437)
Q Consensus 172 ~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~-~~ 250 (437)
..+|.++.+|.+|||++|++.|.++.++++|+..|++|++.||.++++||++++.+|++.++|+++|++|||||+++ ..
T Consensus 8 ~~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~ 87 (283)
T 1w98_B 8 SPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN 87 (283)
T ss_dssp CCSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999998 57
Q ss_pred ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcH-
Q 013766 251 VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK- 329 (437)
Q Consensus 251 v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~- 329 (437)
+.+.++||+|+||||||||+||..+|++++|+.++++.|++++|++||+.||++|+|++++|||++|+.+|++.++.+.
T Consensus 88 v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 88 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred ----------HHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHH
Q 013766 330 ----------KLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIF 399 (437)
Q Consensus 330 ----------~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l 399 (437)
.....+.+++++++.|+.|+.|+||.||||||++|. |.+.+..++||++++|.+|++.|..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 168 HEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPF 239 (283)
T ss_dssp CCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 223346789999999999999999999999999984 67888999999999999999999887
Q ss_pred HH---hcCCCCcchhhcccCCcccCccccCCCchhhhcC
Q 013766 400 HQ---KAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGA 435 (437)
Q Consensus 400 ~~---~~~~~~l~~i~~KYss~kf~~va~~~~~~~l~~~ 435 (437)
+. +.+.++++. ++||+++.|+.|+..+|.--+++.
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~l~~ 277 (283)
T 1w98_B 240 AMVIRETGSSKLKH-FRGVADEDAHNIQTHRDSLDLLDK 277 (283)
T ss_dssp HHHHHHHCCCCCCC-CTTSCGGGGGGBCCCCCHHHHHTC
T ss_pred HHHHHhcChHhhcc-hhccCHHhccCcccCcchHHHHHh
Confidence 65 445666665 679999999999999887776653
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.1e-48 Score=373.52 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=213.5
Q ss_pred CCCCccchhhhHHHHHHHHHHhhhcCCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccC
Q 013766 171 EKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMA-QQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQ 249 (437)
Q Consensus 171 ~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~-~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~ 249 (437)
+..||+++.+ +||| +|++.|.++.++++|+. .|++|++.||.++++||+++|.+|+++++|+++||+|||||+++.
T Consensus 10 ~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~ 86 (257)
T 1g3n_C 10 GLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK 86 (257)
T ss_dssp ------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC
Confidence 4669999998 9999 99999999999999985 699999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcH
Q 013766 250 PVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK 329 (437)
Q Consensus 250 ~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~ 329 (437)
.+.+.++||+|+||||||||+||..+|++++|+.++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++.+.
T Consensus 87 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~ 166 (257)
T 1g3n_C 87 QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGS 166 (257)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887553
Q ss_pred H----HHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCC-----CCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 013766 330 K----LELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGF-----KQWSKTSEWYTSYSEEQLLECSRLMVIFH 400 (437)
Q Consensus 330 ~----l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~-----~~W~~~l~~~tgys~~~l~ec~~~l~~l~ 400 (437)
+ +...+++++++++.|+.|+.|+||.||||||++|+..++.. ..|...+..++||++++|.+|++.|.+++
T Consensus 167 ~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 167 QHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp TTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3 46779999999999999999999999999999999877632 57999999999999999999999999998
Q ss_pred HhcCCCCcc
Q 013766 401 QKAGTGKLT 409 (437)
Q Consensus 401 ~~~~~~~l~ 409 (437)
.+.....+.
T Consensus 247 ~~~~~~~l~ 255 (257)
T 1g3n_C 247 SDFDLRILD 255 (257)
T ss_dssp HHCCCCC--
T ss_pred HHCCHHhhc
Confidence 876655443
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3e-47 Score=369.30 Aligned_cols=231 Identities=18% Similarity=0.230 Sum_probs=211.9
Q ss_pred CCCCCccchhhhHHHHHHHHHHhhhcCCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhcc
Q 013766 170 EEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMA-QQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTV 248 (437)
Q Consensus 170 ~~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~-~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~ 248 (437)
.+..||+++.+ +|||+ |++.|.++.++++|+. .|+++++.||.++++||++++.+|+++++|+|+||+|+|||+++
T Consensus 10 ~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~ 86 (254)
T 2f2c_A 10 RAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCK 86 (254)
T ss_dssp BCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTT
T ss_pred CCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHcc
Confidence 45679999998 99999 9999999999999996 79999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCc
Q 013766 249 QPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSD 328 (437)
Q Consensus 249 ~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~ 328 (437)
..+.+.++||+|+||||||||+||..+|++++|+.++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++.+
T Consensus 87 ~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 87 KQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred CCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH----HHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCC-c---hhhhhhhcCCCHHHHHHHHHHHHHHH
Q 013766 329 KK----LELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQ-W---SKTSEWYTSYSEEQLLECSRLMVIFH 400 (437)
Q Consensus 329 ~~----l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~-W---~~~l~~~tgys~~~l~ec~~~l~~l~ 400 (437)
.+ +...|++++++++.|+.|+.|+||.||||||++|+....+.+. | ...+..++||++++|.+|++.|.+++
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 43 3567999999999999999999999999999999987534333 5 78889999999999999999999987
Q ss_pred Hhc
Q 013766 401 QKA 403 (437)
Q Consensus 401 ~~~ 403 (437)
.+.
T Consensus 247 ~~~ 249 (254)
T 2f2c_A 247 SLY 249 (254)
T ss_dssp HTC
T ss_pred HhC
Confidence 644
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=367.66 Aligned_cols=230 Identities=23% Similarity=0.354 Sum_probs=207.7
Q ss_pred CCCccchhhhHHHHHHHHHHhhhcCCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCc
Q 013766 172 KKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMA-QQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQP 250 (437)
Q Consensus 172 ~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~-~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~ 250 (437)
..||.++ |.++||++|++.|.++.+.++|+. .|++|++.||.++++||++|+.+|+++++|+++||+||||||++..
T Consensus 30 ~~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~ 107 (306)
T 3g33_B 30 GPDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP 107 (306)
T ss_dssp ---------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC
T ss_pred CCCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC
Confidence 3466665 899999999999999999999997 5999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcH-
Q 013766 251 VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK- 329 (437)
Q Consensus 251 v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~- 329 (437)
+.+.++||+|+||||||||+||..+|.+++|+.++++.|++++|++||+.||++|+|+++.|||++||.+|++.++.+.
T Consensus 108 v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~ 187 (306)
T 3g33_B 108 TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRD 187 (306)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTT
T ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCc----hhhhhhhcCCCHHHHHHHHHHHHHHHHh
Q 013766 330 ---KLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQW----SKTSEWYTSYSEEQLLECSRLMVIFHQK 402 (437)
Q Consensus 330 ---~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W----~~~l~~~tgys~~~l~ec~~~l~~l~~~ 402 (437)
.+...+++++++++.++.|+.|+||.||||||++|++.++....| ...+..++||++++|.+|++.|.+++.+
T Consensus 188 ~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 188 RQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp THHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 256778999999999999999999999999999999988765555 5778889999999999999999999865
Q ss_pred c
Q 013766 403 A 403 (437)
Q Consensus 403 ~ 403 (437)
.
T Consensus 268 ~ 268 (306)
T 3g33_B 268 S 268 (306)
T ss_dssp C
T ss_pred H
Confidence 4
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.4e-45 Score=353.31 Aligned_cols=223 Identities=15% Similarity=0.140 Sum_probs=201.2
Q ss_pred CCCCccchhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCc
Q 013766 171 EKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQP 250 (437)
Q Consensus 171 ~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~ 250 (437)
...||.++.+ +||++|++.|.++.+ +..|+++++.||.++||||++||.+|++.++|+|+||+|+||||++..
T Consensus 13 ~~~dp~l~~d---~i~~~l~~~E~~~~p----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~ 85 (252)
T 1f5q_B 13 SLLNEEDCRQ---MIYRSEREHDARMVG----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR 85 (252)
T ss_dssp TTCCHHHHHH---HHHHHHHHHHHHHSS----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHhHH---HHHHHHHHHHHHhCc----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC
Confidence 3558888865 999999999998754 556889999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHH
Q 013766 251 VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKK 330 (437)
Q Consensus 251 v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~ 330 (437)
+.+.++||+|+||||||||+||..+|.+++++.++++.|++++|++||+.||++|+|+++.|||++|+++|++.++.+.+
T Consensus 86 v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 86 IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ----HHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCc----hhhhhhhcCCCHHHHHHHHHHHHHHHHh
Q 013766 331 ----LELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQW----SKTSEWYTSYSEEQLLECSRLMVIFHQK 402 (437)
Q Consensus 331 ----l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W----~~~l~~~tgys~~~l~ec~~~l~~l~~~ 402 (437)
+...+.+++++++.|+.|+.|+||.|||||+.++ ++....| ...+..++||+.++|.+|++.|.+++..
T Consensus 166 ~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~---l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 166 DYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT---MNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH---hccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999995444 3443444 5667889999999999999999998754
Q ss_pred c
Q 013766 403 A 403 (437)
Q Consensus 403 ~ 403 (437)
.
T Consensus 243 ~ 243 (252)
T 1f5q_B 243 F 243 (252)
T ss_dssp C
T ss_pred h
Confidence 4
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.6e-44 Score=350.75 Aligned_cols=230 Identities=26% Similarity=0.389 Sum_probs=204.9
Q ss_pred CCCccchhhhHHHHHHHHHHhhhcCCCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCc
Q 013766 172 KKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMA-QQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQP 250 (437)
Q Consensus 172 ~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~-~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~ 250 (437)
..||.++ .++||++|++.|.++.++++|+. .|++|++.||.++++||++++.+|+++++|+++|++|||||+++..
T Consensus 17 ~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~ 93 (271)
T 2w96_A 17 YPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP 93 (271)
T ss_dssp -----------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSC
T ss_pred CCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCC
Confidence 4567666 67999999999999999999985 5999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHH
Q 013766 251 VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKK 330 (437)
Q Consensus 251 v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~ 330 (437)
+.+.++|++|+||||||||+||..+|++++++.++++.|++++|++||+.||++|+|++++|||++|+.+|++.++.+.+
T Consensus 94 v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~ 173 (271)
T 2w96_A 94 VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEE 173 (271)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred H----HHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcC----CCCc----hhhhhhhcCCCHHHHHHHHHHHHH
Q 013766 331 L----ELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSG----FKQW----SKTSEWYTSYSEEQLLECSRLMVI 398 (437)
Q Consensus 331 l----~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~----~~~W----~~~l~~~tgys~~~l~ec~~~l~~ 398 (437)
. ...+++++++++.|+.|+.|+||.||||||++|+..++. ...| .+.+..++||++++|++|++.|..
T Consensus 174 ~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~ 253 (271)
T 2w96_A 174 NKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEA 253 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3 456889999999999999999999999999999987642 2334 457888999999999999999999
Q ss_pred HHHhcC
Q 013766 399 FHQKAG 404 (437)
Q Consensus 399 l~~~~~ 404 (437)
++....
T Consensus 254 l~~~~~ 259 (271)
T 2w96_A 254 LLESSL 259 (271)
T ss_dssp HHTTTT
T ss_pred HHHHHH
Confidence 886544
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=9.6e-36 Score=288.56 Aligned_cols=206 Identities=19% Similarity=0.266 Sum_probs=182.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhh-
Q 013766 207 FDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILIS- 285 (437)
Q Consensus 207 ~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is- 285 (437)
++....+|..+++||.++|.+|+|+++|+++|++|||||++++++.+.++|++|+||||||||+||. ++++++++.++
T Consensus 24 ~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 24 ADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 3445689999999999999999999999999999999999999999999999999999999999998 89999998654
Q ss_pred -------------hcccC--HHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHc-ccccc
Q 013766 286 -------------DKAYS--RKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLV-EYEML 349 (437)
Q Consensus 286 -------------~~~yt--~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~-d~~~l 349 (437)
++.|+ +++|++||+.||++|+|+++++||+.|+.+|++.++.+.++..+|+++++.++. +..++
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l 182 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCL 182 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGG
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHH
Confidence 34555 899999999999999999999999999999999999999999999999999985 55589
Q ss_pred CcCHHHHHHHHHHHHHHHhcCC-------CCchhhhhhhcCCCHHHHHHHHHHHHHHHHhcCCCCcchhhcccC
Q 013766 350 KFPPSLLAAAAVYTAQCTLSGF-------KQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYS 416 (437)
Q Consensus 350 ~~~PS~IAaAaI~lA~~~l~~~-------~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~~~~~l~~i~~KYs 416 (437)
.|+||.||+|||++|...++.. ..|...+ .++|++++|.+|++.|++++.+.+. +++.|+.++.
T Consensus 183 ~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~~-~l~~~~~~~~ 253 (257)
T 2ivx_A 183 QYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTPN-RLKKIRNWRA 253 (257)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhChH-HhhHHHHhhh
Confidence 9999999999999999877632 3576643 4689999999999999999987654 6677777654
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=288.04 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=185.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhc--
Q 013766 210 NERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDK-- 287 (437)
Q Consensus 210 ~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~-- 287 (437)
..++|..+++||.++|.+|+|+++|+++|++|||||++.+.+.+.++|++|+||||||||+||...|++++++.+++.
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999999999999999999988889999876532
Q ss_pred ------------ccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHH
Q 013766 288 ------------AYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSL 355 (437)
Q Consensus 288 ------------~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~ 355 (437)
.+++++|++||+.||++|+|++.++||+.||.+|++.++.+.++..+|+++++.++.++.++.|+||.
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~ 198 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFM 198 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCchhhhhhhcCCCHHHHHHHHHHHHHHHHhc----CCCCcchhhcccCCcc
Q 013766 356 LAAAAVYTAQCTLSG-FKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKA----GTGKLTGVHRKYSTSK 419 (437)
Q Consensus 356 IAaAaI~lA~~~l~~-~~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~----~~~~l~~i~~KYss~k 419 (437)
||+||||+|...++. ...|... +|++.++|.+|+..|++++... ......+++.||+.++
T Consensus 199 IAaAaiylA~~~~~~~~~~W~~~----~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 199 IALACLHVACVVQQKDARQWFAE----LSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHT----SCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHcCCChhhHHHH----HCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 999999999987663 2456553 5999999999999999998653 2344678889999877
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.1e-34 Score=280.93 Aligned_cols=198 Identities=20% Similarity=0.355 Sum_probs=175.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhh
Q 013766 206 QFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILIS 285 (437)
Q Consensus 206 q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is 285 (437)
++++...+|..+++||.+++.+|+|+++|+++|++|||||+++.++.+.++|++|+||||||||+||. ++++++++.++
T Consensus 33 ~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 33 DPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999999999995 88999998654
Q ss_pred -----hccc------CHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHccccccC
Q 013766 286 -----DKAY------SRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK----KLELLSFFLIELCLVEYEMLK 350 (437)
Q Consensus 286 -----~~~y------t~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~----~l~~la~~llelsl~d~~~l~ 350 (437)
++.| ++++|++||+.||++|+|+++++||+.|+.+|++.++.+. ++..+|+++++.++.++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 3344 4889999999999999999999999999999999998775 688899999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhcCC-CCchhh-------hhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 013766 351 FPPSLLAAAAVYTAQCTLSGF-KQWSKT-------SEWYTSYSEEQLLECSRLMVIFHQKAG 404 (437)
Q Consensus 351 ~~PS~IAaAaI~lA~~~l~~~-~~W~~~-------l~~~tgys~~~l~ec~~~l~~l~~~~~ 404 (437)
|+||.||+|||++|...++.. +.|... ...++|+++++|.+|++.|++++.+..
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~ 253 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSC
T ss_pred cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999877632 334321 122479999999999999999886543
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-33 Score=269.44 Aligned_cols=187 Identities=15% Similarity=0.180 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccc-cchhhhHhhHHHhhhhccccCCcchhHHHhhhhc-----
Q 013766 214 RGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVR-KKLQLVGVTAMLLACKYEEVSVPVVEDLILISDK----- 287 (437)
Q Consensus 214 R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~-~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~----- 287 (437)
|..+++||.+++..|+|+++|+++|++|||||+++..+.+ .+++++|+||||||||+||. ++++++++.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 99999999999999999995 8899999998865
Q ss_pred -ccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHH
Q 013766 288 -AYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQC 366 (437)
Q Consensus 288 -~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~ 366 (437)
.+++++|++||+.||++|+|++.++||+.||.+|++.++.+.++...|+++++.++.++.++.|+||.||+|||++|..
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~ 186 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCC 186 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999988889999999999999999999999999999999999986
Q ss_pred HhcCC-CCchhhhhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 013766 367 TLSGF-KQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAG 404 (437)
Q Consensus 367 ~l~~~-~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~~ 404 (437)
.++.. +.|...+ .|+++++|.+|++.|.+++....
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 187 NDENTIPKLLDLI---KSTDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp SCTTHHHHHHHHC---CHHHHHHHHHHHHHHHHHHTSSS
T ss_pred hcCCCCCCCcchh---hcCCHHHHHHHHHHHHHHHhhCC
Confidence 54421 1243333 39999999999999999986544
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=4.2e-34 Score=289.95 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=178.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhh--
Q 013766 208 DINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILIS-- 285 (437)
Q Consensus 208 ~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is-- 285 (437)
+....+|..+++||.+++.+|+|+++|+++|++|||||+++..+.+.++|+||+||||||||+||. ++.+++|+.++
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999998 88999998665
Q ss_pred ------------hcccC--HHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcc-ccccC
Q 013766 286 ------------DKAYS--RKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVE-YEMLK 350 (437)
Q Consensus 286 ------------~~~yt--~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d-~~~l~ 350 (437)
++.|+ +++|++||+.||++|+|++.++||+.||.+|++.+..+.++..+|+++++.++.+ ..++.
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~ 190 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQ 190 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhc
Confidence 33454 8899999999999999999999999999999999999999999999999999864 44799
Q ss_pred cCHHHHHHHHHHHHHHHhcCC-------CCchhhhhhhcCCCHHHHHHHHHHHHHHHHhcCCCCcchhhc
Q 013766 351 FPPSLLAAAAVYTAQCTLSGF-------KQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHR 413 (437)
Q Consensus 351 ~~PS~IAaAaI~lA~~~l~~~-------~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~~~~~l~~i~~ 413 (437)
|+||.||+||||+|...++.. ..|...+ .++|++++|.+|++.|++++.+.+. +++.|..
T Consensus 191 y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~~i~~ 257 (358)
T 2pk2_A 191 YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN-RLKRIWN 257 (358)
T ss_dssp SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc-cccchhc
Confidence 999999999999999877521 3576644 3589999999999999999876654 4555543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=2e-31 Score=266.87 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhc-
Q 013766 211 ERMRGILIDWLIEVHYKFE--LMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDK- 287 (437)
Q Consensus 211 ~~~R~~LvdWl~ev~~~~~--L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~- 287 (437)
..+|...++||.++|..|+ |+++|+++|++|||||++.+++.+.++|++|+||||||||+||. ++++++|+..+..
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 4678999999999999999 99999999999999999999999999999999999999999998 6789999876542
Q ss_pred ----ccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHccccccCcCHHHH
Q 013766 288 ----AYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKAS-------QSDKKLELLSFFLIELCLVEYEMLKFPPSLL 356 (437)
Q Consensus 288 ----~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~-------~~~~~l~~la~~llelsl~d~~~l~~~PS~I 356 (437)
.|++++|++||+.||++|+|++.++||+.||.+|+..+ .....+...|+++++.++.++.++.|+||.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 36789999999999999999999999999999998764 2345688899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCchhhhhhh--cCCCHHHHHHHHHHHHHHHHhcCCC---Ccchhhcc
Q 013766 357 AAAAVYTAQCTLSGF-KQWSKTSEWY--TSYSEEQLLECSRLMVIFHQKAGTG---KLTGVHRK 414 (437)
Q Consensus 357 AaAaI~lA~~~l~~~-~~W~~~l~~~--tgys~~~l~ec~~~l~~l~~~~~~~---~l~~i~~K 414 (437)
|+||||+|...++.. +.|...+..+ ++++.++|.+|++.|..++...... .+++|.+|
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~K 276 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQK 276 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 999999999877643 6798877655 7889999999999999988764332 23445555
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=2e-27 Score=223.00 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCH
Q 013766 212 RMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSR 291 (437)
Q Consensus 212 ~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~ 291 (437)
+......+||.++|..|+|++.|+.+|+.||+||+....+.+.+.+++++||||||||+||. +++++|++.+++ ++.
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 45677889999999999999999999999999999999999999999999999999999997 899999999887 899
Q ss_pred HHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCC
Q 013766 292 KEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGF 371 (437)
Q Consensus 292 ~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~ 371 (437)
.+|.++|+.||+.|+|++..++|+.|+.+|++.++.+.++...|+++++.++.+..+++++|+.||+||||+|.... +.
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~-~~ 158 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQAS-AE 158 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHH-CC
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999997654 56
Q ss_pred CCchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 013766 372 KQWSKTSEWYTSYSEEQLLECSRLMVIFHQ 401 (437)
Q Consensus 372 ~~W~~~l~~~tgys~~~l~ec~~~l~~l~~ 401 (437)
+.|.+.+..++|+++.+|.+|++.|.....
T Consensus 159 ~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 159 KRTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999987543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.92 E-value=9.2e-24 Score=196.86 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCH
Q 013766 212 RMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSR 291 (437)
Q Consensus 212 ~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~ 291 (437)
+......++|.++|..++|++.+...|..||+||+....+.+...+.++++|+|+|||.|+. +.+++|+..+++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~-p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV-PRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--CCH
Confidence 34578899999999999999999999999999999999999999999999999999999995 899999998877 899
Q ss_pred HHHHHHHHHHHHHcCCcccc--CChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhc
Q 013766 292 KEVLDMEKLMVNTLQFNMSV--PTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLS 369 (437)
Q Consensus 292 ~eI~~mE~~IL~~L~f~L~~--pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~ 369 (437)
.+|.++|+.|++.|+|++.. ++|+.|+.+|+..++.+.++...|+++++.+..+..+.+++|+.|||||||+|... .
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~-~ 162 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLL-E 162 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHH-h
Confidence 99999999999999999999 99999999999999999999999999999999988899999999999999999765 4
Q ss_pred CCCCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 013766 370 GFKQWSKTSEWYTSYSEEQLLECSRLMVIFH 400 (437)
Q Consensus 370 ~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~ 400 (437)
+.+.|.+.+..++|+++.+|..|++.|.+.+
T Consensus 163 ~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 163 GEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999998765
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-20 Score=190.24 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHH
Q 013766 214 RGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKE 293 (437)
Q Consensus 214 R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~e 293 (437)
.......|.+++..++|+..+...|..||.|++....+.....+.+++||||||||.|+. +.+++|++.+++ ++..+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 456778999999999999999999999999999999999999999999999999999887 899999999877 88999
Q ss_pred HHHHHHHHHHHcC------------CccccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHH
Q 013766 294 VLDMEKLMVNTLQ------------FNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAV 361 (437)
Q Consensus 294 I~~mE~~IL~~L~------------f~L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI 361 (437)
|.++++.|++.|+ +++.+++|+.|+.+|+..++.+.++...|+++++.+..+..+..++|+.||||||
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaI 282 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSI 282 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 013766 362 YTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFH 400 (437)
Q Consensus 362 ~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~ 400 (437)
|+|...+ +...|.+.+...+|+++..|+.+++.|..+.
T Consensus 283 ylAa~~~-~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 283 YLNILLF-QIPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9997654 4577889999999999999999999998765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.58 E-value=2.3e-15 Score=151.66 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHH
Q 013766 215 GILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEV 294 (437)
Q Consensus 215 ~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI 294 (437)
......|.+++..++|+..+...|..||.+++....+.......++++|||+|||.++. +.++.|+..+++ .+..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHH
Confidence 45667889999999999999999999999999998899999999999999999998886 889999998876 689999
Q ss_pred HHHHHHHHHHcCCc------------cccCChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHH
Q 013766 295 LDMEKLMVNTLQFN------------MSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVY 362 (437)
Q Consensus 295 ~~mE~~IL~~L~f~------------L~~pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~ 362 (437)
.+..+.|++.|+.. +...+|.+|+.+|+..++.+.++...|..+++.+..+......+|+.|||||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIy 283 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 99999999999974 677899999999999999999999999999999888777789999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 013766 363 TAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFH 400 (437)
Q Consensus 363 lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~ 400 (437)
+|.... +...-.+.+...+|+++..|+..+++|....
T Consensus 284 lAa~l~-g~~~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 284 LNILLF-QIPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 997654 4455566788889999999999999988654
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.28 E-value=3.6e-06 Score=82.04 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCc---ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHH
Q 013766 217 LIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQP---VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKE 293 (437)
Q Consensus 217 LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~---v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~e 293 (437)
+-+|+.++....+++.+++-.|..|+||+..... +...+.+-+.++||.+|+|+-+.....-+.+..++ .++.+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHHH
Confidence 6789999999999999999999999999987533 55667888899999999999777677778888774 489999
Q ss_pred HHHHHHHHHHHcCCccccCChHHHHHHHHHHc
Q 013766 294 VLDMEKLMVNTLQFNMSVPTPYVFMRRFLKAS 325 (437)
Q Consensus 294 I~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~ 325 (437)
+-.||+..|..|+|+|.+. +..|...++...
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 9999999999999999766 455666555543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.36 E-value=0.00063 Score=62.36 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHH
Q 013766 219 DWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDME 298 (437)
Q Consensus 219 dWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE 298 (437)
++|...+..++++.++...|..++.+.+....+.+.....+++||+++||+.... +.+.+++..+++ ++...|.+.-
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 5788889999999999999999999999888888899999999999999998775 567889988877 6899999999
Q ss_pred HHHHHHcCCccc
Q 013766 299 KLMVNTLQFNMS 310 (437)
Q Consensus 299 ~~IL~~L~f~L~ 310 (437)
+.+.+.|+..+.
T Consensus 187 ~~l~~~l~~~~~ 198 (200)
T 1ais_B 187 KELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHcCCCCC
Confidence 999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.22 E-value=0.033 Score=51.00 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHH
Q 013766 314 PYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECS 393 (437)
Q Consensus 314 p~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~ 393 (437)
+..++..+...++..+.+...|..+....+....+..+++..+|+||+|+|.+.- +.+.-...+...++++..+|..+.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~e-e~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE-GVPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCHHHHHHHH
Confidence 5678899999999999999999999999888777889999999999999997654 445566677788999999999999
Q ss_pred HHHHHHH
Q 013766 394 RLMVIFH 400 (437)
Q Consensus 394 ~~l~~l~ 400 (437)
+.|++.+
T Consensus 87 ~~ll~~L 93 (207)
T 1c9b_A 87 KLILKAL 93 (207)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887754
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.03 E-value=0.23 Score=49.41 Aligned_cols=89 Identities=10% Similarity=0.020 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHH
Q 013766 312 PTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLE 391 (437)
Q Consensus 312 pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~e 391 (437)
-.++..+..+...++....+...|..+...+.....+-..+...+||||||+|.+. .+.+.--..+..+++++..+|..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~keigr 205 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHHHHH
Confidence 33666788889999999999999999998887665566789999999999999754 45565666677889999999999
Q ss_pred HHHHHHHHHH
Q 013766 392 CSRLMVIFHQ 401 (437)
Q Consensus 392 c~~~l~~l~~ 401 (437)
+++.|.+.+.
T Consensus 206 ~~k~l~~~L~ 215 (345)
T 4bbr_M 206 TLNIMKNILR 215 (345)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHHhC
Confidence 9999887543
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=92.82 E-value=0.8 Score=42.57 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccC-cCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--------CC
Q 013766 314 PYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLK-FPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--------SY 384 (437)
Q Consensus 314 p~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~-~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--------gy 384 (437)
..+|+......++.......+|..+++..+....+.. +.+-.+|+||+|+|.+.-. .+.-...+...+ .+
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccchhhc
Confidence 4567888888888888888899889998888888888 9999999999999987644 333333333333 57
Q ss_pred CHHHHHHHHHHHHHHH
Q 013766 385 SEEQLLECSRLMVIFH 400 (437)
Q Consensus 385 s~~~l~ec~~~l~~l~ 400 (437)
+.++|..+-..|++.+
T Consensus 110 ~~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 110 SRSNISEIEFEIISVL 125 (235)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHC
Confidence 8999999988887654
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.13 Score=51.19 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHH
Q 013766 314 PYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECS 393 (437)
Q Consensus 314 p~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~ 393 (437)
++.++..+...++..+.+...|..+...++....+-..+...||+||||+|.+ ..+.+.--..+..+++++..+|..++
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR-~e~~prtl~ei~~~~~v~~keIgr~~ 207 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCR-RAEVARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSB-TTBSSCCHHHHHHSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHHHHHHHH
Confidence 55688889999999999998999888888766666788999999999999965 34445555667778999999999999
Q ss_pred HHHHHHHH
Q 013766 394 RLMVIFHQ 401 (437)
Q Consensus 394 ~~l~~l~~ 401 (437)
+.|.+.+.
T Consensus 208 ~~l~~~L~ 215 (345)
T 3k7a_M 208 NIMKNILR 215 (345)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988764
No 25
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=91.29 E-value=5.6 Score=36.53 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCc---ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCH
Q 013766 215 GILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQP---VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSR 291 (437)
Q Consensus 215 ~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~---v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~ 291 (437)
..+.+-|..++.+-+++..++--||.+-..|.-... ..-.+.+-|+++|+.||+-- -..|..+.++..+ +.....
T Consensus 13 P~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~-~~~PiplaE~r~l-D~sL~D 90 (260)
T 3h4c_A 13 PTMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEE-AQQPLPLAEVRCL-DSSLGD 90 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHH-CTTCCC
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHH-cCCCccHHHHHHH-hhhhhH
Confidence 345666789999999999999999999999876443 45566899999999999973 3346667776544 333332
Q ss_pred HHHHHHHHHHHHHcCCc-----cccCChHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHccccccCcCHHHHHHHHHHHHH
Q 013766 292 KEVLDMEKLMVNTLQFN-----MSVPTPYVFMRRFLKASQSDKKLELL-SFFLIELCLVEYEMLKFPPSLLAAAAVYTAQ 365 (437)
Q Consensus 292 ~eI~~mE~~IL~~L~f~-----L~~pTp~~FL~~fl~~~~~~~~l~~l-a~~llelsl~d~~~l~~~PS~IAaAaI~lA~ 365 (437)
-++.+. .|++.|+.. +.-.-.-..|..|+..++..-.++.. +..|++..-.-..+..+---.--.-|+++|+
T Consensus 91 velrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLAr 168 (260)
T 3h4c_A 91 VELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLAR 168 (260)
T ss_dssp HHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 333333 355555532 11111223444455555544333222 2233333222223444554444555677776
Q ss_pred HHhcCCCCch
Q 013766 366 CTLSGFKQWS 375 (437)
Q Consensus 366 ~~l~~~~~W~ 375 (437)
.. ..-.|.
T Consensus 169 T~--~~l~W~ 176 (260)
T 3h4c_A 169 TA--QTLSWE 176 (260)
T ss_dssp HS--CGGGGC
T ss_pred cc--cccccc
Confidence 32 334564
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.08 E-value=1 Score=42.35 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhh-ccCcccccchhhhHhhHHHhhhhccccCCcchh---HHHhhhhcccCHHHH
Q 013766 219 DWLIEVHYKFELMEETLYLTVNLIDRFL-TVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVE---DLILISDKAYSRKEV 294 (437)
Q Consensus 219 dWl~ev~~~~~L~~eTl~lAV~l~DRfL-s~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~---dl~~is~~~yt~~eI 294 (437)
+++......++.+.++..+|..++..-+ ............+|+||+++|+++-....|... .+....+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4666677788888888889998885554 233356677889999999999998654433211 122222335789999
Q ss_pred HHHHHHHHHHc
Q 013766 295 LDMEKLMVNTL 305 (437)
Q Consensus 295 ~~mE~~IL~~L 305 (437)
...-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=90.02 E-value=2.2 Score=40.46 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--CCCHHHHHHH
Q 013766 315 YVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--SYSEEQLLEC 392 (437)
Q Consensus 315 ~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--gys~~~l~ec 392 (437)
.+|+......++.......+|..+++..+....+....+-.+|+||+++|.+.-...+.-...+...+ .|+.++|..+
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 34666667777777888888888888888877778889999999999999876554333344455566 4899999999
Q ss_pred HHHHHHHH
Q 013766 393 SRLMVIFH 400 (437)
Q Consensus 393 ~~~l~~l~ 400 (437)
-..|++.+
T Consensus 122 E~~IL~~L 129 (269)
T 2b9r_A 122 EMKILRAL 129 (269)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88888754
No 28
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.70 E-value=1.3 Score=41.56 Aligned_cols=88 Identities=8% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCh----hhHHHHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchh------HHHhhhhcc
Q 013766 219 DWLIEVHYKFELME----ETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVE------DLILISDKA 288 (437)
Q Consensus 219 dWl~ev~~~~~L~~----eTl~lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~------dl~~is~~~ 288 (437)
+|+...+..++.+. +...+|..+++..+............+|+||+++|+++.....+... .+...-...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 57777788888876 57788999998887776777788899999999999998654332211 111111125
Q ss_pred cCHHHHHHHHHHHHHHcC
Q 013766 289 YSRKEVLDMEKLMVNTLQ 306 (437)
Q Consensus 289 yt~~eI~~mE~~IL~~L~ 306 (437)
++.++|...-..|++...
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999998764
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.92 E-value=0.98 Score=45.04 Aligned_cols=87 Identities=11% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhhc-cCcccccchhhhHhhHHHhhhhccccCCcch---hHHHhhhhcccCHHHH
Q 013766 219 DWLIEVHYKFELMEETLYLTVNLIDRFLT-VQPVVRKKLQLVGVTAMLLACKYEEVSVPVV---EDLILISDKAYSRKEV 294 (437)
Q Consensus 219 dWl~ev~~~~~L~~eTl~lAV~l~DRfLs-~~~v~~~~lqLva~acL~IAsK~EE~~~p~i---~dl~~is~~~yt~~eI 294 (437)
+||......++.+.++..+|.+++..-+. ...........||+|||++|+++-....|.. ..+....+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35666677788888888899998866553 3335666788999999999999866433321 1222222335789999
Q ss_pred HHHHHHHHHHc
Q 013766 295 LDMEKLMVNTL 305 (437)
Q Consensus 295 ~~mE~~IL~~L 305 (437)
...-..|+..+
T Consensus 235 ~~i~~~il~~y 245 (358)
T 2pk2_A 235 DELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 30
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=87.69 E-value=3.5 Score=39.02 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--CCCHHHHHHHHH
Q 013766 317 FMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--SYSEEQLLECSR 394 (437)
Q Consensus 317 FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--gys~~~l~ec~~ 394 (437)
|+......++.....-.+|..+++-.+.-..+.....-.+|+||+++|.+.-...+.-.+.+...+ .|+.++|..+-.
T Consensus 63 wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~ 142 (271)
T 2w96_A 63 WMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMEL 142 (271)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 444444445555555566666777766666667788999999999999876554233333444555 389999999988
Q ss_pred HHHHHH
Q 013766 395 LMVIFH 400 (437)
Q Consensus 395 ~l~~l~ 400 (437)
.|++.+
T Consensus 143 ~IL~~L 148 (271)
T 2w96_A 143 LLVNKL 148 (271)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 887654
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=87.68 E-value=2.5 Score=39.82 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--CCCHHHHHHHH
Q 013766 316 VFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--SYSEEQLLECS 393 (437)
Q Consensus 316 ~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--gys~~~l~ec~ 393 (437)
+|+......++.....-.+|..+++..+.-..+.....-.+|+||+++|.+.-.....-...+..++ .|+.++|..+-
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHH
Confidence 4555555566666666667777777666655666677889999999999876554233344455555 48999999998
Q ss_pred HHHHHHH
Q 013766 394 RLMVIFH 400 (437)
Q Consensus 394 ~~l~~l~ 400 (437)
..|++.+
T Consensus 124 ~~iL~~L 130 (260)
T 2cch_B 124 HLVLKVL 130 (260)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888754
No 32
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=87.50 E-value=4 Score=39.02 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc------------
Q 013766 315 YVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT------------ 382 (437)
Q Consensus 315 ~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t------------ 382 (437)
.+||......++.......+|..+++-.+....+..+.+-.||+||+++|.+.-.....-...+...+
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 45667777778888888888988999888888888999999999999999875432221112222111
Q ss_pred ----CCCHHHHHHHHHHHHHHH
Q 013766 383 ----SYSEEQLLECSRLMVIFH 400 (437)
Q Consensus 383 ----gys~~~l~ec~~~l~~l~ 400 (437)
.++.++|..+-..|++.+
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHc
Confidence 257788888887777654
No 33
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=87.03 E-value=2.9 Score=39.23 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcC--CCHHHHHHHH
Q 013766 316 VFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTS--YSEEQLLECS 393 (437)
Q Consensus 316 ~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tg--ys~~~l~ec~ 393 (437)
+|+.......+.....-.+|..+++..+....+.....-.+|+||+++|.+.-...+.-...+...++ |+.++|..+-
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 135 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQE 135 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHH
Confidence 45555556666777777777778887777666667778899999999998765443333344555554 8999999988
Q ss_pred HHHHHHH
Q 013766 394 RLMVIFH 400 (437)
Q Consensus 394 ~~l~~l~ 400 (437)
..|++.+
T Consensus 136 ~~iL~~L 142 (257)
T 1g3n_C 136 KELLEKL 142 (257)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 8877654
No 34
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=86.77 E-value=3.3 Score=38.85 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--CCCHHHHHHH
Q 013766 315 YVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--SYSEEQLLEC 392 (437)
Q Consensus 315 ~~FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--gys~~~l~ec 392 (437)
.+|+.......+.....-.+|..+++-.+..........-.+|+||+++|.+.-...+.-...+...+ .|+.++|..+
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 34555555666677777778888888888777777889999999999999877554333333444454 3899999998
Q ss_pred HHHHHHHHH
Q 013766 393 SRLMVIFHQ 401 (437)
Q Consensus 393 ~~~l~~l~~ 401 (437)
-..|++.+.
T Consensus 136 E~~IL~~L~ 144 (254)
T 2f2c_A 136 EKDILEALK 144 (254)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888887543
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=84.84 E-value=4.5 Score=39.21 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcC--CCHHHHHHHHH
Q 013766 317 FMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTS--YSEEQLLECSR 394 (437)
Q Consensus 317 FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tg--ys~~~l~ec~~ 394 (437)
|+......++.......+|..+++.-+....+.....-.+|++|+++|.+.-...+.-...+..+++ |+.++|..+-.
T Consensus 77 wl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~ 156 (306)
T 3g33_B 77 WMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEV 156 (306)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHH
Confidence 4444445555555566666666666666566677889999999999998765543323334455554 88999999888
Q ss_pred HHHHHH
Q 013766 395 LMVIFH 400 (437)
Q Consensus 395 ~l~~l~ 400 (437)
.|++.+
T Consensus 157 ~IL~~L 162 (306)
T 3g33_B 157 LVLGKL 162 (306)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887654
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=84.58 E-value=6.5 Score=37.52 Aligned_cols=85 Identities=8% Similarity=0.079 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHcc-ccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--CCCHHHHHHH
Q 013766 316 VFMRRFLKASQSDKKLELLSFFLIELCLVE-YEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--SYSEEQLLEC 392 (437)
Q Consensus 316 ~FL~~fl~~~~~~~~l~~la~~llelsl~d-~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--gys~~~l~ec 392 (437)
+|+......++.....-.+|..+++-.+.- ........-.+|+||+++|.+.-.....-...+..++ .|+.++|..+
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 344455555566666666666666666554 3456778899999999999877554333334455555 4899999999
Q ss_pred HHHHHHHH
Q 013766 393 SRLMVIFH 400 (437)
Q Consensus 393 ~~~l~~l~ 400 (437)
-..|++.+
T Consensus 135 E~~IL~~L 142 (283)
T 1w98_B 135 ELMIMKAL 142 (283)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88887654
No 37
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=84.24 E-value=6.7 Score=37.96 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHcCCcHHHHHHHHHHHHHHHc-cccc--cCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHH
Q 013766 312 PTPYVFMRRFLKASQSDKKLELLSFFLIELCLV-EYEM--LKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQ 388 (437)
Q Consensus 312 pTp~~FL~~fl~~~~~~~~l~~la~~llelsl~-d~~~--l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~ 388 (437)
++...|+.++.+..........++..+++.... ...+ ......-|-++|+.+|.+.++....|+.....+.|++..+
T Consensus 75 ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 467789999998888877766666555554333 3333 4578889999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 013766 389 LLECSRLMVIFH 400 (437)
Q Consensus 389 l~ec~~~l~~l~ 400 (437)
+..+=..++.++
T Consensus 155 LN~LE~eFL~lL 166 (293)
T 2pmi_B 155 LNILENDFLKRV 166 (293)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 998887777654
No 38
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=82.93 E-value=9.4 Score=37.19 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=59.0
Q ss_pred HHHHHHHHHcC--CcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcC-------CCH
Q 013766 316 VFMRRFLKASQ--SDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTS-------YSE 386 (437)
Q Consensus 316 ~FL~~fl~~~~--~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tg-------ys~ 386 (437)
.++..+...++ ....+..+|..+++-.+....+..+.|-.||+||+|+|.+.-.. +.-...+...+. ++.
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~~~ 140 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEKAL 140 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHHHH
Confidence 45666777777 78888888888999888888889999999999999999876443 222222222232 224
Q ss_pred HHHHHHHHHHHHHH
Q 013766 387 EQLLECSRLMVIFH 400 (437)
Q Consensus 387 ~~l~ec~~~l~~l~ 400 (437)
++|..+-..|++-+
T Consensus 141 ~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 141 EQILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 67777766666543
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=78.05 E-value=11 Score=30.24 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=54.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhhccCc------ccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHH
Q 013766 221 LIEVHYKFELMEETLYLTVNLIDRFLTVQP------VVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEV 294 (437)
Q Consensus 221 l~ev~~~~~L~~eTl~lAV~l~DRfLs~~~------v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI 294 (437)
+.++|..|++.. ....|-.++++|=..-. +.-.+ -...++|+|.|||..-..+... .|+..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~-P~f~aaA~~~acr~~K~kVdK~-KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR-PLFTSAALLSACKILKLKVDKN-KMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS-HHHHHHHHHHHHHHTTCCCCHH-HHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc-cHHHHHHHHHHHHHHccCCCHH-HHHHHHC--CCHHHH
Confidence 457888999764 88889999999965422 22233 4466789999999988766653 4555544 567777
Q ss_pred HHHHHHHHHH
Q 013766 295 LDMEKLMVNT 304 (437)
Q Consensus 295 ~~mE~~IL~~ 304 (437)
-+.+..+-+.
T Consensus 81 ~~l~~~~e~~ 90 (95)
T 3m03_A 81 DRLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 40
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=70.36 E-value=22 Score=33.29 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhc--CCCHHHHHHHHH
Q 013766 317 FMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYT--SYSEEQLLECSR 394 (437)
Q Consensus 317 FL~~fl~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~t--gys~~~l~ec~~ 394 (437)
|+.......+.....-.+|-.+++--+..........-.+|++|+++|.+.-...+.-...+..++ .|+.++|...=.
T Consensus 55 Wl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~ 134 (252)
T 1f5q_B 55 WMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEV 134 (252)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 444444455555555666666666665555566677889999999999876554333333344444 488999988877
Q ss_pred HHHHHH
Q 013766 395 LMVIFH 400 (437)
Q Consensus 395 ~l~~l~ 400 (437)
.|++.+
T Consensus 135 ~IL~~L 140 (252)
T 1f5q_B 135 KSLDTL 140 (252)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 777644
No 41
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=41.64 E-value=68 Score=31.01 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=45.8
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhhccC---cccccchhhhHhhHHHhhhhccccCCcchhHHHhhhh
Q 013766 221 LIEVHYKFELMEETLYLTVNLIDRFLTVQ---PVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISD 286 (437)
Q Consensus 221 l~ev~~~~~L~~eTl~lAV~l~DRfLs~~---~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~ 286 (437)
..++|..++++..|...|..++.+.-+.- .-....-+..-.+|||+|+.-.+....++..+++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 45789999999999999999999966531 1122233444455699999876666677777776654
No 42
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=36.70 E-value=30 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=38.8
Q ss_pred cCCChhhHH---HHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHH
Q 013766 228 FELMEETLY---LTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEV 294 (437)
Q Consensus 228 ~~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI 294 (437)
+++.+++++ +|.+|||- -.|+-++|-.+|.++....+-.++.+..+.+. ||.++-
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd-~t~eEe 156 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND-FTPEEE 156 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCC-CCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC-CCHHHH
Confidence 467777775 56666543 35788899999999887766666777777544 887653
No 43
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=35.78 E-value=38 Score=29.16 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=37.1
Q ss_pred CCChhhHH---HHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHH
Q 013766 229 ELMEETLY---LTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEV 294 (437)
Q Consensus 229 ~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI 294 (437)
+++.++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+.+ -||.++-
T Consensus 93 ~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~-d~t~eEe 149 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKN-DFTEEEE 149 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCC-CSCTTHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 56777665 55566543 3577889999999998876666677777654 3776543
No 44
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=35.55 E-value=35 Score=29.54 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=32.4
Q ss_pred CCChhhHH---HHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHH
Q 013766 229 ELMEETLY---LTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEV 294 (437)
Q Consensus 229 ~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI 294 (437)
+++.++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+.+ -||.++-
T Consensus 92 ~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNI-----------KNLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp ---------CHHHHHHTTC-----------HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 35566654 56666553 3578899999999998766666677777754 4787653
No 45
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=22.91 E-value=76 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=30.1
Q ss_pred cCCChhhHH---HHHHHHHHhhccCcccccchhhhHhhHHHhhhhccccCCcchhHHHhh
Q 013766 228 FELMEETLY---LTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILI 284 (437)
Q Consensus 228 ~~L~~eTl~---lAV~l~DRfLs~~~v~~~~lqLva~acL~IAsK~EE~~~p~i~dl~~i 284 (437)
+++..++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+
T Consensus 87 ~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~f~I 135 (141)
T 1fs1_B 87 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNI 135 (141)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHTC-
T ss_pred HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 367777775 66666653 35778899999998877544444444444
No 46
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=22.64 E-value=1.9e+02 Score=22.95 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=37.4
Q ss_pred CcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHHHh
Q 013766 350 KFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQK 402 (437)
Q Consensus 350 ~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~ 402 (437)
.+.--.-++||+|.+.+.+.. ..-...|...+|.++.++..++..|-++..+
T Consensus 42 D~s~P~f~aaA~~~acr~~K~-kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILKL-KVDKNKMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTTC-CCCHHHHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHcc-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 444445667788888665543 3334457788999999999999998887643
Done!