BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013767
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 190/413 (46%), Gaps = 25/413 (6%)
Query: 26 EIKQLFDQFSENG-TMSVDNLLKFMIDYQKEETAKKEDAQEIFNSLKHLNIFQ-RKGLHF 83
EI + F++ + + T+SV+ L+ F+ Q+EE A A + + + ++ +
Sbjct: 79 EIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTK 138
Query: 84 DAFFRYLY---GDHNLPIPNKVHHDMDSPLAHYFLYTGHNSYLTGNQLSSDSSSKPIIKA 140
D F YL G+ +V+ DMD PL+HY + + HN+YL +QL+ SS++ I+A
Sbjct: 139 DGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRA 198
Query: 141 LRRGVRVIELDLW--PNSEKNDVEVCHGGTLTAPVDLNKCLHAIRDNAFDASEYPVVITF 198
L +G R +ELD W PN E + HG T T+ + L AIRD AF AS YPV+++
Sbjct: 199 LCKGCRCLELDCWDGPNQEPI---IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSL 255
Query: 199 EDHLPPNLQDKVAKMVTKTFGTMLY-RPESENLEEFPSPNSLKRKILISTKPPKEYLQTQ 257
E+H Q +A+ + G +L +P PSP ++ K+
Sbjct: 256 ENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSP---EQLKGKILLKGKKLGGLL 312
Query: 258 DSKGKGNAQMLKTSSKKEVAQTERLYSRTGSDTIDXXXXXXXXXXXXXXXXNAVPEYTNL 317
+ G+ ++ S + E A+ E D VPE +++
Sbjct: 313 PAGGENGSEATDVSDEVEAAEME-----------DEAVRSQVQHKPKEDKLKLVPELSDM 361
Query: 318 IAIHATKLKDGLAKVLGSDQSKAKRLSMSEQQLENAINIHGSEIVRFTQRNLLRIYPKGT 377
I + G + S Q+ + S SE + + G+ VR L RIYP G
Sbjct: 362 IIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGW 421
Query: 378 RILSTNYDPHVGWGHGAQMVAFNMQGTGKYLWIMQGMFRANGGCGYVKKPEFL 430
R S+NY P W G Q+VA N Q G + + G F+ NGGCGYV KP FL
Sbjct: 422 RTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFL 474
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 190/413 (46%), Gaps = 25/413 (6%)
Query: 26 EIKQLFDQFSENG-TMSVDNLLKFMIDYQKEETAKKEDAQEIFNSLKHLNIFQ-RKGLHF 83
EI + F++ + + T+SV+ L+ F+ Q+EE A A + + + ++ +
Sbjct: 81 EIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTK 140
Query: 84 DAFFRYLY---GDHNLPIPNKVHHDMDSPLAHYFLYTGHNSYLTGNQLSSDSSSKPIIKA 140
D F YL G+ +V+ DMD PL+HY + + HN+YL +QL+ SS++ I+A
Sbjct: 141 DGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRA 200
Query: 141 LRRGVRVIELDLW--PNSEKNDVEVCHGGTLTAPVDLNKCLHAIRDNAFDASEYPVVITF 198
L +G R +ELD W PN E + HG T T+ + L AIRD AF AS YPV+++
Sbjct: 201 LCKGCRCLELDCWDGPNQEPI---IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSL 257
Query: 199 EDHLPPNLQDKVAKMVTKTFGTMLY-RPESENLEEFPSPNSLKRKILISTKPPKEYLQTQ 257
E+H Q +A+ + G +L +P PSP ++ K+
Sbjct: 258 ENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSP---EQLKGKILLKGKKLGGLL 314
Query: 258 DSKGKGNAQMLKTSSKKEVAQTERLYSRTGSDTIDXXXXXXXXXXXXXXXXNAVPEYTNL 317
+ G+ ++ S + E A+ E D VPE +++
Sbjct: 315 PAGGENGSEATDVSDEVEAAEME-----------DEAVRSQVQHKPKEDKLKLVPELSDM 363
Query: 318 IAIHATKLKDGLAKVLGSDQSKAKRLSMSEQQLENAINIHGSEIVRFTQRNLLRIYPKGT 377
I + G + S Q+ + S SE + + G+ VR L RIYP G
Sbjct: 364 IIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIYPAGW 423
Query: 378 RILSTNYDPHVGWGHGAQMVAFNMQGTGKYLWIMQGMFRANGGCGYVKKPEFL 430
R S+NY P W G Q+VA N Q G + + G F+ NGGCGYV KP FL
Sbjct: 424 RTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFL 476
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 125/447 (27%), Positives = 202/447 (45%), Gaps = 45/447 (10%)
Query: 23 PPEEIKQLFDQFSENGT--MSVDNLLKFMIDYQKEE--------TAKKEDAQEIFNSLKH 72
P EI ++F + M+ ++L KF+ Q++ A+ + Q + + +
Sbjct: 217 PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEP 276
Query: 73 LNI-FQRKGLHFDAFFRYLYGDHNLPIPNK---VHHDMDSPLAHYFLYTGHNSYLTGNQL 128
I QR L + +L G N + +HHDM PL HYF+ + HN+YLT Q
Sbjct: 277 SGINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTYLTAGQF 336
Query: 129 SSDSSSKPIIKALRRGVRVIELDLWPNSEKNDVE-VCHGGTLTAPVDLNKCLHAIRDNAF 187
S SS++ + L G R +ELD W ++ + HG T+T + + + AI ++AF
Sbjct: 337 SGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAF 396
Query: 188 DASEYPVVITFEDHL-PPNLQDKVAKMVTKTFGTMLYRPESENLEEF--------PSPNS 238
S YP++++FE+H+ P Q K+A+ FG ML +E LE+F PSP
Sbjct: 397 KTSPYPIILSFENHVDSPRQQAKMAEYCRTIFGDMLL---TEPLEKFPLKPGVPLPSPED 453
Query: 239 LKRKILISTKPPKEYLQTQDSKGKGN-AQMLKTSSKKEV------------AQTERLYSR 285
L+ KILI K + T SK G A+ S V E
Sbjct: 454 LRGKILIKNKKNQFSGPTSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEE 513
Query: 286 TGSDTIDXXXXXXXXXXXXXXXXNAVPEYTNLI-AIHATKLKDGLAKVLGSDQSKAKRL- 343
+G+ + A E ++L+ I TK ++ + ++++ +
Sbjct: 514 SGNLDEEEIKKMQSDEGTAGLEVTAYEEMSSLVNYIQPTKF---VSFEFSAQKNRSYVIS 570
Query: 344 SMSEQQLENAINIHGSEIVRFTQRNLLRIYPKGTRILSTNYDPHVGWGHGAQMVAFNMQG 403
S +E + + ++ + V + +R + RIYPKGTR+ S+NY P + W G QMVA N Q
Sbjct: 571 SFTELKAYDLLSKASVQFVDYNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQT 630
Query: 404 TGKYLWIMQGMFRANGGCGYVKKPEFL 430
+ +F NG GY+ K EF+
Sbjct: 631 MDLPMQQNMAVFEFNGQSGYLLKHEFM 657
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 207/449 (46%), Gaps = 48/449 (10%)
Query: 4 QAFQICFFFKRIFKLRVAEPPEEIKQLFDQFSEN-GTMSVDNLLKFMIDYQKEETAKKE- 61
+AF FFK F L + E EI+ +F + S+N G ++ F+ D Q+ + K
Sbjct: 211 KAFDFDTFFK--FYLALLER-SEIEGIFKELSKNKGNITTVMFRDFLNDMQRHPSLHKTL 267
Query: 62 -----DAQEIFNSLKHLNIFQRKG-----LHFDAFFRYLYGDHNLPIPN---KVHHDMDS 108
DAQ + + +KG L + +L + N P + +M
Sbjct: 268 FPLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMCEENNLTPMHRLDLGANMKL 327
Query: 109 PLAHYFLYTGHNSYLTGNQLSSDSSSKPIIKALRRGVRVIELDLWPNSEKNDVEVCHGGT 168
LA Y++ + HN+YLTG+QL+ SS + + L G R +ELD W + + + HG T
Sbjct: 328 TLAAYYINSSHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDGKDGEPI-ITHGFT 386
Query: 169 LTAPVDLNKCLHAIRDNAFDASEYPVVITFEDHLPPNLQDKVAKMVTKTFGTMLY-RP-E 226
+ V ++AI ++AF S+YPV+++FE+H Q +A+ + FG +L +P +
Sbjct: 387 MCTEVLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFGELLLDKPID 446
Query: 227 SENLEE---FPSPNSLKRKILISTKPPKEYLQTQDSKGKGNAQMLKTSSKKEVAQTERLY 283
L+ P+P L++KILI K + KG G+ + L + +E + E+
Sbjct: 447 GHPLKPGVPLPTPYDLRKKILIKNK--------KMHKGTGDDEELAGLTDEEKKKIEKEK 498
Query: 284 SRTGSDTIDXXXXXXXXXXXXXXXXNAVPEYTNLIAIHATKLKDGLAKVLGSDQSKAKRL 343
G+ +A+ Y +H T + K + S
Sbjct: 499 KDAGTAA---------KEAEAAEEMSALVNYIQ--PVHFTTFEQAQKKDRHYEMS----- 542
Query: 344 SMSEQQLENAINIHGSEIVRFTQRNLLRIYPKGTRILSTNYDPHVGWGHGAQMVAFNMQG 403
SM E Q N + + + V + ++ + RIYPKGTR+ S+NY P + W G Q+VA N Q
Sbjct: 543 SMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQC 602
Query: 404 TGKYLWIMQGMFRANGGCGYVKKPEFLLK 432
+ + G+F NG GY+ KPEF+ K
Sbjct: 603 FDIAMCVNLGVFEYNGCSGYLLKPEFMRK 631
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 16/186 (8%)
Query: 76 FQRKGLHFDAFFRYLYGDHNLPIPNK---VHHDMDSPLAHYFLYTGHNSYLTGNQLSSDS 132
+R + + F RYL G+ N +P + + DM PL+ YF+ + HN+YLT QL+ S
Sbjct: 287 LERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTS 346
Query: 133 SSKPIIKALRRGVRVIELDLWPNSEKNDVE-VCHGGTLTAPVDLNKCLHAIRDNAFDASE 191
S + +AL G R +ELD+W + + HG T+T V L L AI + AF S
Sbjct: 347 SVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSP 406
Query: 192 YPVVITFEDHL-PPNLQDKVAKMVTKTFGTMLYRPESENLEEF--------PSPNSLKRK 242
YPV+++FE+H+ Q K+A+ FG L E L+++ PSP L +
Sbjct: 407 YPVILSFENHVDSAKQQAKMAEYCRSIFGDALL---IEPLDKYPLAPGVPLPSPQDLMGR 463
Query: 243 ILISTK 248
IL+ K
Sbjct: 464 ILVKNK 469
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 360 EIVRFTQRNLLRIYPKGTRILSTNYDPHVGWGHGAQMVAFNMQGTGKYLWIMQGMFRANG 419
E V + ++ L RIYPKGTR+ S+NY P + W G Q+VA N Q + + G+F NG
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 695
Query: 420 GCGYVKKPEFL 430
GY+ KPEF+
Sbjct: 696 RSGYLLKPEFM 706
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 16/186 (8%)
Query: 76 FQRKGLHFDAFFRYLYGDHNLPIPNK---VHHDMDSPLAHYFLYTGHNSYLTGNQLSSDS 132
+R + + F RYL G+ N +P + + DM PL+ YF+ + HN+YLT QL+ S
Sbjct: 285 LERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTS 344
Query: 133 SSKPIIKALRRGVRVIELDLWPNSEKNDVE-VCHGGTLTAPVDLNKCLHAIRDNAFDASE 191
S + +AL G R +ELD+W + + HG T+T V L L AI + AF S
Sbjct: 345 SVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSP 404
Query: 192 YPVVITFEDHL-PPNLQDKVAKMVTKTFGTMLYRPESENLEEF--------PSPNSLKRK 242
YPV+++FE+H+ Q K+A+ FG L E L+++ PSP L +
Sbjct: 405 YPVILSFENHVDSAKQQAKMAEYCRSIFGDALL---IEPLDKYPLAPGVPLPSPQDLMGR 461
Query: 243 ILISTK 248
IL+ K
Sbjct: 462 ILVKNK 467
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 360 EIVRFTQRNLLRIYPKGTRILSTNYDPHVGWGHGAQMVAFNMQGTGKYLWIMQGMFRANG 419
E V + ++ L RIYPKGTR+ S+NY P + W G Q+VA N Q + + G+F NG
Sbjct: 634 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 693
Query: 420 GCGYVKKPEFL 430
GY+ KPEF+
Sbjct: 694 RSGYLLKPEFM 704
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 344 SMSEQQLENAINIHGSEIVRFTQRNLLRIYPKGTRILSTNYDPHVGWGHGAQMVAFNMQG 403
SM E Q N + + + V + ++ L RIYPKGTR+ S+NY P + W G Q+VA N Q
Sbjct: 543 SMVETQALNKLKDNPEDFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQC 602
Query: 404 TGKYLWIMQGMFRANGGCGYVKKPEFLLK 432
+ + G+F NG GY+ KPEF+ K
Sbjct: 603 FDVAMCVNLGVFEYNGCSGYLLKPEFMRK 631
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 167 GTLTAPVDLNKCLHAIRDNAFDASEYPVVITFEDHLPP-NLQDKVAKMVTKTFGTMLYRP 225
G+L P+ L + I N + + +PP NL++ V K ++ P
Sbjct: 417 GSLKEPITLPARVPNILLNGTTG----IAVGMATDIPPHNLRE-----VVKGTIALIRNP 467
Query: 226 ES--ENLEEF-PSPNSLKRKILISTKPPKEYLQTQDSKGKGNAQM--LKTSSKKEVAQTE 280
++ E L E+ P+P+ + +I+ PP+E L+ Q + G+G+ +M + T K E+ TE
Sbjct: 468 QTSDEKLAEYIPAPDLPTKAEIIT--PPEELLKIQ-TTGRGSYRMRAVYTIEKNEIVITE 524
Query: 281 RLYSRTGSDTI 291
Y +GS I
Sbjct: 525 LPYQVSGSKVI 535
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 167 GTLTAPVDLNKCLHAIRDNAFDASEYPVVITFEDHLPP-NLQDKVAKMVTKTFGTMLYRP 225
G+L P+ L + I N + + +PP NL++ V K ++ P
Sbjct: 417 GSLKEPITLPARVPNILLNGTTG----IAVGMATDIPPHNLRE-----VVKGTIALIRNP 467
Query: 226 ES--ENLEEF-PSPNSLKRKILISTKPPKEYLQTQDSKGKGNAQM--LKTSSKKEVAQTE 280
++ E L E+ P+P+ + +I+ PP+E L+ Q + G+G+ +M + T K E+ TE
Sbjct: 468 QTSDEKLAEYIPAPDLPTKAEIIT--PPEELLKIQ-TTGRGSYRMRAVYTIEKNEIVITE 524
Query: 281 RLYSRTGSDTI 291
Y +GS I
Sbjct: 525 LPYQVSGSKVI 535
>pdb|2QEN|A Chain A, The Walker-type Atpase Paby2304 Of Pyrococcus Abyssi
Length = 350
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 67 FNSLKHLNIF-QRKGLHFDAFFRYLYGDHNLPIPNKVHHDMDSPLAHYFL-YTGHNSYLT 124
F+ ++L + R G A F Y Y +LP + + L H FL T + S L
Sbjct: 134 FDEAQYLRFYGSRGGKELLALFAYAY--DSLPNLKIILTGSEVGLLHDFLKITDYESPLY 191
Query: 125 GNQLSSDSSSKPI-----IKALRRGVRVIELDLWPNSEKNDVEVCHG 166
G +++ + KP ++ L+RG R + LD+ N + VE+ G
Sbjct: 192 G-RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG 237
>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
Length = 412
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 14 RIFKLRVAEPPEEIKQLFDQFSENGTMSVDNLLK---FMIDYQKEETAKK 60
R + VAE PEE+++ +FS + D L + +I KEET +K
Sbjct: 120 RTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,939,892
Number of Sequences: 62578
Number of extensions: 536405
Number of successful extensions: 1304
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 27
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)