Query 013768
Match_columns 437
No_of_seqs 176 out of 1122
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06879 PX_UP1_plant The phosp 100.0 5.6E-30 1.2E-34 229.6 12.7 114 48-161 1-138 (138)
2 cd06877 PX_SNX14 The phosphoin 99.9 4.6E-25 1E-29 192.4 13.8 113 48-160 3-118 (119)
3 cd06861 PX_Vps5p The phosphoin 99.9 6.6E-25 1.4E-29 188.6 13.0 111 49-161 2-112 (112)
4 cd07280 PX_YPT35 The phosphoin 99.9 1E-24 2.2E-29 189.3 12.9 109 49-159 4-119 (120)
5 cd06865 PX_SNX_like The phosph 99.9 4.5E-24 9.8E-29 185.8 12.9 99 63-161 19-120 (120)
6 cd07276 PX_SNX16 The phosphoin 99.9 5.5E-24 1.2E-28 182.1 11.8 106 48-161 4-110 (110)
7 cd06897 PX_SNARE The phosphoin 99.9 1.1E-23 2.5E-28 178.0 13.0 103 49-161 2-108 (108)
8 cd06868 PX_HS1BP3 The phosphoi 99.9 8.8E-24 1.9E-28 184.9 12.7 110 49-161 3-120 (120)
9 cd06873 PX_SNX13 The phosphoin 99.9 1.4E-23 2.9E-28 182.8 13.5 112 47-160 4-119 (120)
10 cd07281 PX_SNX1 The phosphoino 99.9 1E-23 2.2E-28 184.4 12.6 111 49-161 2-124 (124)
11 cd06898 PX_SNX10 The phosphoin 99.9 1.6E-23 3.5E-28 181.0 13.4 110 48-160 2-112 (113)
12 cd06870 PX_CISK The phosphoino 99.9 1.3E-23 2.8E-28 179.6 11.8 105 49-161 4-109 (109)
13 cd06886 PX_SNX27 The phosphoin 99.9 1.7E-23 3.6E-28 179.3 12.5 103 47-160 3-105 (106)
14 cd07301 PX_SNX21 The phosphoin 99.9 2E-23 4.4E-28 180.2 13.0 110 49-161 2-112 (112)
15 cd07295 PX_Grd19 The phosphoin 99.9 2.4E-23 5.3E-28 180.9 13.0 100 63-162 15-115 (116)
16 cd07282 PX_SNX2 The phosphoino 99.9 1.9E-23 4E-28 183.6 12.2 98 63-160 14-123 (124)
17 cd06863 PX_Atg24p The phosphoi 99.9 3E-23 6.5E-28 179.2 13.2 110 48-160 3-117 (118)
18 cd07300 PX_SNX20 The phosphoin 99.9 2.9E-23 6.2E-28 180.1 12.8 110 50-162 3-113 (114)
19 cd06864 PX_SNX4 The phosphoino 99.9 2.9E-23 6.3E-28 183.4 13.0 112 50-161 3-129 (129)
20 cd06881 PX_SNX15_like The phos 99.9 2.6E-23 5.6E-28 180.4 12.3 110 46-160 1-116 (117)
21 cd07279 PX_SNX20_21_like The p 99.9 3.5E-23 7.6E-28 177.5 12.6 109 50-161 3-112 (112)
22 cd06859 PX_SNX1_2_like The pho 99.9 2.4E-23 5.2E-28 177.6 11.4 110 50-161 3-114 (114)
23 cd06860 PX_SNX7_30_like The ph 99.9 4.8E-23 1E-27 178.4 13.2 109 50-160 3-115 (116)
24 cd06862 PX_SNX9_18_like The ph 99.9 4.4E-23 9.5E-28 181.8 12.6 108 48-162 1-108 (125)
25 cd06894 PX_SNX3_like The phosp 99.9 4.2E-23 9E-28 181.1 12.3 111 49-162 3-122 (123)
26 cd06867 PX_SNX41_42 The phosph 99.9 3.2E-23 6.8E-28 177.8 11.3 102 50-161 2-112 (112)
27 cd07293 PX_SNX3 The phosphoino 99.9 6.1E-23 1.3E-27 180.3 13.0 110 49-161 3-121 (123)
28 cd06876 PX_MDM1p The phosphoin 99.9 6.9E-23 1.5E-27 180.8 13.2 111 48-159 20-132 (133)
29 cd06878 PX_SNX25 The phosphoin 99.9 6.8E-23 1.5E-27 180.6 12.9 110 48-160 9-126 (127)
30 cd07286 PX_SNX18 The phosphoin 99.9 5.8E-23 1.3E-27 182.1 12.5 105 50-161 3-107 (127)
31 cd06875 PX_IRAS The phosphoino 99.9 8.2E-23 1.8E-27 177.5 12.6 104 48-163 4-107 (116)
32 cd07283 PX_SNX30 The phosphoin 99.9 8.5E-23 1.8E-27 177.8 12.7 98 63-160 14-115 (116)
33 cd06872 PX_SNX19_like_plant Th 99.9 8.6E-23 1.9E-27 175.3 12.0 103 49-159 2-105 (107)
34 cd06893 PX_SNX19 The phosphoin 99.9 6.5E-23 1.4E-27 182.4 11.5 111 50-160 2-131 (132)
35 cd06880 PX_SNX22 The phosphoin 99.9 1.1E-22 2.5E-27 174.8 12.6 105 48-164 1-105 (110)
36 cd07294 PX_SNX12 The phosphoin 99.9 1.2E-22 2.6E-27 180.8 13.2 117 48-167 4-129 (132)
37 cd07284 PX_SNX7 The phosphoino 99.9 3E-22 6.6E-27 174.5 12.9 98 63-160 14-115 (116)
38 cd06885 PX_SNX17_31 The phosph 99.9 5.4E-22 1.2E-26 169.2 11.3 100 50-159 2-101 (104)
39 cd06866 PX_SNX8_Mvp1p_like The 99.9 6.4E-22 1.4E-26 169.1 10.9 89 65-160 16-104 (105)
40 cd07285 PX_SNX9 The phosphoino 99.9 9.5E-22 2.1E-26 174.3 12.2 94 63-163 16-110 (126)
41 cd07288 PX_SNX15 The phosphoin 99.9 9.9E-22 2.2E-26 171.7 11.8 97 64-160 14-117 (118)
42 cd07277 PX_RUN The phosphoinos 99.9 1.1E-21 2.3E-26 171.6 11.8 107 49-163 2-108 (118)
43 cd07287 PX_RPK118_like The pho 99.9 2.5E-21 5.4E-26 169.4 12.2 97 64-160 14-117 (118)
44 cd06871 PX_MONaKA The phosphoi 99.8 2E-20 4.3E-25 163.5 11.4 97 63-164 17-113 (120)
45 cd06883 PX_PI3K_C2 The phospho 99.8 2.6E-20 5.6E-25 160.1 11.8 105 50-160 2-108 (109)
46 cd06869 PX_UP2_fungi The phosp 99.8 2.9E-20 6.3E-25 162.8 11.9 91 63-161 29-119 (119)
47 cd06093 PX_domain The Phox Hom 99.8 7.7E-20 1.7E-24 148.8 13.1 105 50-160 2-106 (106)
48 smart00312 PX PhoX homologous 99.8 3.7E-20 8E-25 152.8 11.1 93 64-159 9-105 (105)
49 cd06882 PX_p40phox The phospho 99.8 6.7E-20 1.5E-24 161.0 12.2 107 48-162 4-119 (123)
50 cd06874 PX_KIF16B_SNX23 The ph 99.8 7.4E-20 1.6E-24 162.0 12.1 99 49-154 2-101 (127)
51 cd06891 PX_Vps17p The phosphoi 99.8 1.2E-19 2.7E-24 163.4 12.9 118 39-161 21-140 (140)
52 cd06884 PX_PI3K_C2_68D The pho 99.8 1.3E-18 2.8E-23 150.9 10.8 94 63-159 14-109 (111)
53 PF00787 PX: PX domain; Inter 99.8 2.3E-18 4.9E-23 141.7 10.7 107 47-160 3-112 (113)
54 KOG2527 Sorting nexin SNX11 [I 99.8 9.2E-19 2E-23 156.3 6.9 115 48-164 18-133 (144)
55 cd07291 PX_SNX5 The phosphoino 99.7 5.2E-18 1.1E-22 152.7 9.3 108 48-161 3-141 (141)
56 cd06892 PX_SNX5_like The phosp 99.7 8E-18 1.7E-22 151.9 10.0 108 48-161 3-141 (141)
57 cd06895 PX_PLD The phosphoinos 99.7 2E-17 4.3E-22 148.8 12.0 107 48-160 4-139 (140)
58 cd07289 PX_PI3K_C2_alpha The p 99.7 1.8E-17 3.9E-22 143.9 11.1 104 50-159 2-107 (109)
59 cd06890 PX_Bem1p The phosphoin 99.7 6.5E-17 1.4E-21 139.6 11.7 101 49-160 2-111 (112)
60 cd07290 PX_PI3K_C2_beta The ph 99.7 7.1E-17 1.5E-21 140.2 11.1 93 64-159 13-107 (109)
61 cd07292 PX_SNX6 The phosphoino 99.7 4.4E-17 9.4E-22 146.7 9.8 108 47-160 2-140 (141)
62 cd06887 PX_p47phox The phospho 99.7 8.2E-17 1.8E-21 141.4 10.9 92 64-161 15-116 (118)
63 cd06888 PX_FISH The phosphoino 99.7 2E-16 4.3E-21 138.9 10.9 94 63-160 14-118 (119)
64 KOG2273 Membrane coat complex 99.6 1.8E-15 4E-20 158.0 12.2 117 46-163 108-229 (503)
65 cd07296 PX_PLD1 The phosphoino 99.5 3.1E-14 6.7E-19 128.0 10.9 106 49-160 5-134 (135)
66 KOG2528 Sorting nexin SNX9/SH3 99.5 2.8E-14 6E-19 147.5 11.9 100 63-169 201-300 (490)
67 cd06889 PX_NoxO1 The phosphoin 99.4 1.6E-12 3.5E-17 115.1 10.4 93 64-160 16-120 (121)
68 KOG1259 Nischarin, modulator o 99.3 6.3E-12 1.4E-16 127.0 9.1 96 63-164 23-118 (490)
69 cd06896 PX_PI3K_C2_gamma The p 99.3 9.7E-12 2.1E-16 106.7 8.9 87 68-160 13-100 (101)
70 COG5391 Phox homology (PX) dom 99.2 1.3E-11 2.9E-16 131.4 8.6 104 48-152 133-244 (524)
71 KOG3784 Sorting nexin protein 99.0 1.2E-09 2.7E-14 112.2 7.8 89 63-160 13-101 (407)
72 cd07297 PX_PLD2 The phosphoino 98.9 7.4E-09 1.6E-13 92.7 9.2 85 68-160 24-129 (130)
73 KOG2101 Intermediate filament- 98.4 6.5E-07 1.4E-11 90.6 8.1 93 63-155 131-232 (362)
74 KOG0905 Phosphoinositide 3-kin 98.3 2.4E-06 5.2E-11 97.4 9.4 114 42-161 1370-1485(1639)
75 cd07298 PX_RICS The phosphoino 97.7 0.00018 3.8E-09 63.6 8.0 84 66-160 26-115 (115)
76 KOG4773 NADPH oxidase [Energy 97.4 0.00025 5.4E-09 73.0 5.4 89 67-160 38-136 (386)
77 cd07278 PX_RICS_like The phosp 97.0 0.0064 1.4E-07 53.8 9.4 88 64-160 23-114 (114)
78 cd07299 PX_TCGAP The phosphoin 96.5 0.01 2.2E-07 52.4 7.2 88 64-160 22-113 (113)
79 KOG1660 Sorting nexin SNX6/TFA 95.8 0.012 2.7E-07 60.8 5.1 94 67-161 39-163 (399)
80 PLN02866 phospholipase D 87.2 1.5 3.2E-05 51.5 7.2 93 67-164 32-174 (1068)
81 PF08388 GIIM: Group II intron 44.2 26 0.00056 27.8 3.1 30 398-427 1-32 (80)
82 PF11172 DUF2959: Protein of u 38.2 29 0.00063 34.0 2.9 36 395-430 157-193 (201)
83 PF15145 DUF4577: Domain of un 36.5 35 0.00076 30.9 3.0 38 388-429 82-126 (128)
84 PF13801 Metal_resist: Heavy-m 31.0 40 0.00086 27.6 2.3 42 388-429 40-81 (125)
85 KOG1329 Phospholipase D1 [Lipi 30.0 44 0.00095 39.1 3.1 93 67-164 66-167 (887)
86 PF14980 TIP39: TIP39 peptide 29.1 48 0.001 25.9 2.2 21 124-144 20-48 (51)
87 KOG0241 Kinesin-like protein [ 27.7 33 0.0007 40.9 1.6 17 420-436 1315-1331(1714)
88 PF15619 Lebercilin: Ciliary p 22.2 1E+02 0.0023 29.7 3.7 33 397-429 33-72 (194)
89 PF08951 EntA_Immun: Enterocin 20.5 1.7E+02 0.0037 22.5 4.0 33 395-428 22-54 (75)
No 1
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.96 E-value=5.6e-30 Score=229.63 Aligned_cols=114 Identities=84% Similarity=1.289 Sum_probs=109.0
Q ss_pred EEEEeCCeEeccCCCCCCCeE------------------------EEEEEEeeecCCCCCcceEEEccchhHHHHHHHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVV------------------------FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLK 103 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yV------------------------vY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lk 103 (437)
|||.||||.++++++++++.+ +|.|+|+++++++....|.|.||||||++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~ 80 (138)
T cd06879 1 YCVFIPSWVVLPKSKESDGKAINPKVGNMSVVYSEYQPLNNAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLK 80 (138)
T ss_pred CcEeccceeEeccccCCCCccccccccccccceeeeecccCCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHH
Confidence 799999999999998888766 99999999999998999999999999999999999
Q ss_pred HHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 104 KAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 104 k~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
+.||...+||+|+|+++++++++|||+||.+||+||++|+++|.+++++.|++||+++
T Consensus 81 ~~~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLele 138 (138)
T cd06879 81 KLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLELE 138 (138)
T ss_pred HHCCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCCC
Confidence 9999889999999999888899999999999999999999999999999999999986
No 2
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.93 E-value=4.6e-25 Score=192.43 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=99.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeec---CCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS---PEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS 124 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqs---peg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d 124 (437)
|.|+||+.....+..+++.|++|.|+|+... +......|.|.||||||.+||.+|++.||....|+||+|++++.++
T Consensus 3 ~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~ 82 (119)
T cd06877 3 WRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKS 82 (119)
T ss_pred ceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCC
Confidence 6899999987644346788999999996421 1223579999999999999999999999988889999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 125 ~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
++|||+||.+||+||+.|+++|.+++|+.|++||+.
T Consensus 83 ~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~ 118 (119)
T cd06877 83 YEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSP 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCC
Confidence 999999999999999999999999999999999975
No 3
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.92 E-value=6.6e-25 Score=188.56 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=96.7
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efL 128 (437)
.|.|.......+ ..++|++|.|++....+.+....|.|.||||||.+||++|++.||...+|++|+|.++++++++||
T Consensus 2 ~i~V~dp~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fi 79 (112)
T cd06861 2 EITVGDPHKVGD--LTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFV 79 (112)
T ss_pred EEEEcCcceecC--CccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHH
Confidence 344444444333 456899999999776666667899999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 129 EERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
|+||.+||.||+.|++||.+++|+.|+.||+.+
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 80 EQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 999999999999999999999999999999864
No 4
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.92 E-value=1e-24 Score=189.27 Aligned_cols=109 Identities=23% Similarity=0.390 Sum_probs=97.0
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---CCCCCCCCcccC----
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---NIPPAPPKGLLR---- 121 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~---~LPpLPpK~l~r---- 121 (437)
.|.|++|..+....++++|++|.|+|.+..+ ....|.|.||||||.+||+.|++.||.. .+|+||+|++++
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~ 81 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRV 81 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccc
Confidence 6899999987554447899999999965442 2379999999999999999999999976 799999998877
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccC
Q 013768 122 MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (437)
Q Consensus 122 ~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLe 159 (437)
+.+++|||+||++||.||+.|+++|.+++|+.|++||+
T Consensus 82 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 82 NLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence 67899999999999999999999999999999999997
No 5
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.91 E-value=4.5e-24 Score=185.79 Aligned_cols=99 Identities=26% Similarity=0.451 Sum_probs=89.6
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC---CCHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM---KSRALLEERRCSLEEWM 139 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~---~d~efLEERR~aLE~YL 139 (437)
++++|++|.|++....+++....|.|.||||||.+||++|++.||...+||+|+|.++.. .+++|||+||++||.||
T Consensus 19 ~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~fie~Rr~~Le~fL 98 (120)
T cd06865 19 GGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYL 98 (120)
T ss_pred CCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccccCCHHHHHHHHHHHHHHH
Confidence 457999999999766555667899999999999999999999999999999999987642 47999999999999999
Q ss_pred HHHhcccCcCCCHHHHhccCcc
Q 013768 140 TKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 140 q~LLs~P~L~~S~~V~eFLele 161 (437)
++|+.||.+++|+.|+.||+.+
T Consensus 99 ~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06865 99 NRLAAHPVIGLSDELRVFLTLQ 120 (120)
T ss_pred HHHHcCceeecCcHHHHhccCC
Confidence 9999999999999999999864
No 6
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.91 E-value=5.5e-24 Score=182.14 Aligned_cols=106 Identities=24% Similarity=0.431 Sum_probs=93.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA 126 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r-~~d~e 126 (437)
+.|.|.+|.++.+ .++||+|.|+|.... ...|.|.||||||.+||+.|++.||. .+|+||+|++++ +.+++
T Consensus 4 ~~~~i~~~~~~~~---~~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~~~~~~ 75 (110)
T cd07276 4 IRPPILGYEVMEE---RARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKDNFDPD 75 (110)
T ss_pred ccceeeeEEEeec---CCCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecccCCHH
Confidence 5789999987543 468999999995432 36999999999999999999999987 578999998776 46899
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
|||+||.+||.||+.|+++|.+++++.|++||+++
T Consensus 76 fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 76 FLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999999999875
No 7
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.91 E-value=1.1e-23 Score=178.00 Aligned_cols=103 Identities=32% Similarity=0.494 Sum_probs=93.7
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--CCCHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR--MKSRA 126 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r--~~d~e 126 (437)
.|+||++... +++|++|.|+|... ...|.|.||||||.+||++|++.+|...+|+||+|.+++ +++++
T Consensus 2 ~v~ip~~~~~-----~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~ 71 (108)
T cd06897 2 EISIPTTSVS-----PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPK 71 (108)
T ss_pred eEEcCCeEEc-----CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHH
Confidence 5899999874 45799999999543 469999999999999999999999988889999998877 77899
Q ss_pred HHHHHHHHHHHHHHHHhccc--CcCCCHHHHhccCcc
Q 013768 127 LLEERRCSLEEWMTKLLSDI--DLSRSVSVASFLELE 161 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P--~L~~S~~V~eFLele 161 (437)
+||+||++||.||+.|+++| .+++|++|++||+++
T Consensus 72 ~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 72 LVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 99999999999999999999 999999999999874
No 8
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.91 E-value=8.8e-24 Score=184.93 Aligned_cols=110 Identities=23% Similarity=0.413 Sum_probs=94.5
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCC--------CcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGI--------TTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL 120 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~--------~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~ 120 (437)
.|.||++...... +.++|++|.|.|.+..+.+. ...|.|.||||||.+||+.|++.||...+||||+|+++
T Consensus 3 ~v~vp~~~~~~~~-~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 3 DLTVPEYQEIRGK-TSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred ceecCCceeecCC-CCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 5889998875432 46789999999864433221 13799999999999999999999999889999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 121 r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
+ +++|||+||++||.||++|++||.+++|+.|++||.++
T Consensus 82 ~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 6 78999999999999999999999999999999999874
No 9
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.91 E-value=1.4e-23 Score=182.82 Aligned_cols=112 Identities=27% Similarity=0.375 Sum_probs=99.8
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 013768 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (437)
Q Consensus 47 Sy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~e 126 (437)
-..++|+++..+.+ +++.|++|.|+|....+++....|.|.||||||.+||++|++.||...+|+||+|.++++.+++
T Consensus 4 ~~~~~i~~~~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~ 81 (120)
T cd06873 4 KLTAVIINTGIVKE--HGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRA 81 (120)
T ss_pred EEEEEEeccEEEcc--CCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHH
Confidence 36789999998765 5778999999997766655568999999999999999999999998888999999988888899
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCC----HHHHhccCc
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRS----VSVASFLEL 160 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S----~~V~eFLel 160 (437)
|||+||.+||.||+.|+++|.++++ ..|.+||+-
T Consensus 82 ~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 82 FLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 9999999999999999999999999 467788863
No 10
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.90 E-value=1e-23 Score=184.38 Aligned_cols=111 Identities=30% Similarity=0.438 Sum_probs=94.8
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--CCCCCCCCCcccCC----
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--KNIPPAPPKGLLRM---- 122 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--~~LPpLPpK~l~r~---- 122 (437)
.|.|.......+ +.++|++|.|.+.+..+......|.|.||||||.+||++|++.|+. +.+||+|+|+++++
T Consensus 2 ~i~V~~p~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~ 79 (124)
T cd07281 2 KVSITDPEKIGD--GMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 79 (124)
T ss_pred EEEEcCCeEeeC--CcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhh
Confidence 466777776544 4678999999997655555567999999999999999999999973 56899999977653
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 123 ------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 123 ------~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
++++|||+||++||.||++|++||.+++|+.|++||+.+
T Consensus 80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~~ 124 (124)
T cd07281 80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEKE 124 (124)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCCC
Confidence 368999999999999999999999999999999999864
No 11
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.90 E-value=1.6e-23 Score=181.02 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=94.2
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RA 126 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d-~e 126 (437)
..|..|.... ++ +.++||+|.|.+.+..+......|.|.||||||.+||++|++.+|...+|+||+|++++..+ ++
T Consensus 2 v~V~dP~~~~--~~-~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~ 78 (113)
T cd06898 2 VEVRDPRTHK--ED-DWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEG 78 (113)
T ss_pred eEEeCCcEec--CC-CCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHH
Confidence 3456666553 21 46689999999976555444578999999999999999999999988899999999887666 99
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
|||+||++||.||++|++||.+++++.|+.||+.
T Consensus 79 fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 79 FIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 9999999999999999999999999999999975
No 12
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.90 E-value=1.3e-23 Score=179.63 Aligned_cols=105 Identities=30% Similarity=0.484 Sum_probs=92.5
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRAL 127 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r-~~d~ef 127 (437)
.|+||+...+.+ ..+.|++|.|+|... ...|.|.||||||.+||++|++.||.. .++||+|++++ +.+++|
T Consensus 4 ~~~i~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~v~RRYseF~~L~~~L~~~~~~~-~~~lP~K~~~~~~~~~~~ 75 (109)
T cd06870 4 SVSIPSSDEDRE--KKKRFTVYKVVVSVG-----RSSWFVFRRYAEFDKLYESLKKQFPAS-NLKIPGKRLFGNNFDPDF 75 (109)
T ss_pred ceeeccceeecc--CCCCeEEEEEEEEEC-----CeEEEEEeehHHHHHHHHHHHHHCccc-CcCCCCCcccccCCCHHH
Confidence 478998876443 467899999999543 369999999999999999999999976 44799999988 778999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
||+||.+||.||+.|+++|.+++++.|++||+++
T Consensus 76 ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 76 IKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 9999999999999999999999999999999874
No 13
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.90 E-value=1.7e-23 Score=179.25 Aligned_cols=103 Identities=27% Similarity=0.438 Sum_probs=92.7
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 013768 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (437)
Q Consensus 47 Sy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~e 126 (437)
+..|+||++..+.+ .+++|++|.|.+. ..|.|.||||||.+||++|++.++...+|+||+|++++. +++
T Consensus 3 ~~~i~Ip~~~~~~~--~~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~~-~~~ 71 (106)
T cd06886 3 SVPISIPDYKHVEQ--NGEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFSL-SEQ 71 (106)
T ss_pred cceEecCCcceEcC--CCCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCCC-CHH
Confidence 57899999986544 3568999999882 279999999999999999999999988999999998864 579
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
|||+||.+||.||+.|+++|++++|+.|++||.-
T Consensus 72 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 72 QLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999999999974
No 14
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.90 E-value=2e-23 Score=180.24 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=94.0
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCC-CCCCCCcccCCCCHHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNI-PPAPPKGLLRMKSRAL 127 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~L-PpLPpK~l~r~~d~ef 127 (437)
.|.|.++.++.+ +.+.||+|.|+|.. .+......|.|.||||||.+||+.|++.||.... +++|+|+++++++++|
T Consensus 2 ~~~v~~~~~~~~--~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~ 78 (112)
T cd07301 2 LFEVTDANVVQD--AHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAET 78 (112)
T ss_pred EEEECCCeEecc--CCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHH
Confidence 467777777655 45789999999952 2223357899999999999999999999996533 5899999888889999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
||+||.+||+||++|+++|.+++++.|++||.++
T Consensus 79 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l~ 112 (112)
T cd07301 79 IAKRSRAFEQFLCHLHSLPELRASPAFLEFFYLR 112 (112)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCCC
Confidence 9999999999999999999999999999999874
No 15
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.90 E-value=2.4e-23 Score=180.91 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=90.6
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
+.+.|++|.|.+.+..+......|.|.||||||.+||+.|++.+|...+||+|+|.+++.++++|||+||++||+||++|
T Consensus 15 g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~ie~Rr~~Le~fL~~i 94 (116)
T cd07295 15 GRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVIEERRQGLETFLQSV 94 (116)
T ss_pred CCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999866555555678999999999999999999999999999999999887778999999999999999999
Q ss_pred hcccCcC-CCHHHHhccCcch
Q 013768 143 LSDIDLS-RSVSVASFLELEA 162 (437)
Q Consensus 143 Ls~P~L~-~S~~V~eFLele~ 162 (437)
++||.++ +++.|++||+.+.
T Consensus 95 ~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 95 AGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred hcCHhhhhCCHHHHHhcCCCC
Confidence 9999998 6899999999875
No 16
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.90 E-value=1.9e-23 Score=183.55 Aligned_cols=98 Identities=28% Similarity=0.446 Sum_probs=86.7
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC----------CCHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM----------KSRALLEE 130 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp--~~~LPpLPpK~l~r~----------~d~efLEE 130 (437)
+.++|++|.|.+.+..+.+....|.|.||||||.|||+.|++.|+ ++.+||+|+|.+++. ++++|||+
T Consensus 14 g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~ 93 (124)
T cd07282 14 GMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEK 93 (124)
T ss_pred CccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCccccccccccccccccCHHHHHH
Confidence 457899999999655555556799999999999999999999997 567899999987653 47899999
Q ss_pred HHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 131 RRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 131 RR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
||++||.||++|++||.|++++.|+.||+.
T Consensus 94 Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 94 RRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred HHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 999999999999999999999999999984
No 17
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.90 E-value=3e-23 Score=179.16 Aligned_cols=110 Identities=26% Similarity=0.336 Sum_probs=94.8
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-----CC
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-----RM 122 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~-----r~ 122 (437)
.+|++|.... + .+.++|++|.|.+.+..+.+....|.|.||||||.+||+.|.+.||...+||||+|..+ +.
T Consensus 3 i~V~dP~~~~--~-~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~ 79 (118)
T cd06863 3 CLVSDPQKEL--D-GSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDR 79 (118)
T ss_pred EEEeCccccc--C-CCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccC
Confidence 4577777653 1 25678999999997666655567899999999999999999999999999999999754 34
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 123 ~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
.+++|||+||++||.||++|++||.+++|+.|+.||+.
T Consensus 80 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 80 FSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 57899999999999999999999999999999999974
No 18
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.90 E-value=2.9e-23 Score=180.14 Aligned_cols=110 Identities=27% Similarity=0.330 Sum_probs=95.0
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC-CCCCCCCCcccCCCCHHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-NIPPAPPKGLLRMKSRALL 128 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~-~LPpLPpK~l~r~~d~efL 128 (437)
+.||++..+.. +.++||+|.|.+. +.+......|+|.||||||.+||..|++.++.. ..|+||+|+++++++++||
T Consensus 3 ~~i~~~~~~~~--~~~~yv~Y~i~~~-~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~i 79 (114)
T cd07300 3 FEIPSARIIEQ--TISKHVVYQIIVI-QTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEII 79 (114)
T ss_pred EEecCceeecc--CCcceEEEEEEEE-EecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHH
Confidence 68999887544 4567999999872 333233579999999999999999999999864 4688999999888899999
Q ss_pred HHHHHHHHHHHHHHhcccCcCCCHHHHhccCcch
Q 013768 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (437)
Q Consensus 129 EERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~ 162 (437)
|+||.+||.||+.|+++|.++.|+.|++||+.++
T Consensus 80 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 113 (114)
T cd07300 80 AERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE 113 (114)
T ss_pred HHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence 9999999999999999999999999999999874
No 19
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.90 E-value=2.9e-23 Score=183.44 Aligned_cols=112 Identities=20% Similarity=0.329 Sum_probs=92.6
Q ss_pred EEeCCeEeccCCCC---CCCeEEEEEEEeeecCCC----CCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--
Q 013768 50 VTIPSWVVLPKSRD---SDPVVFYRVQVGLQSPEG----ITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-- 120 (437)
Q Consensus 50 VsIPSw~~v~~s~~---sk~yVvY~IqV~vqspeg----~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~-- 120 (437)
|+|........+.+ +++|++|.|++.+..+.. ....|.|.||||||.+||+.|.+.||...+||||+|+++
T Consensus 3 i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~ 82 (129)
T cd06864 3 ITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFM 82 (129)
T ss_pred eEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceecc
Confidence 45555544333322 568999999997654432 257899999999999999999999999999999999753
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 121 ------RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 121 ------r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
++++++|||+||++||.||++|++||.+++|++|++||..+
T Consensus 83 ~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 83 WQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 35678999999999999999999999999999999999754
No 20
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.90 E-value=2.6e-23 Score=180.37 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=94.4
Q ss_pred cEEEEEeCCeEeccCCCCCCCeEEEEEEEeeec--CCCCCcceEEEccchhHHHHHHHHHHHCCC----CCCCCCCCCcc
Q 013768 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS--PEGITTTRGVLRRFNNFLKLFTDLKKAFPK----KNIPPAPPKGL 119 (437)
Q Consensus 46 wSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqs--peg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~----~~LPpLPpK~l 119 (437)
|+..++|+..... +++|++|.|.+.+.. .......|.|.||||||.+||++|++.++. ..+|+||+|++
T Consensus 1 ~~~~~~V~d~~~~-----~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~ 75 (117)
T cd06881 1 WSRSFTVTDTRRH-----KKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKY 75 (117)
T ss_pred CcEEEEecCccee-----cCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcc
Confidence 7788888888763 357999999996421 112235999999999999999999999863 35799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 120 ~r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+++++++|||+||++||.||+.|++||.|++++.|++||+-
T Consensus 76 ~g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 76 FGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 99889999999999999999999999999999999999973
No 21
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.90 E-value=3.5e-23 Score=177.50 Aligned_cols=109 Identities=27% Similarity=0.339 Sum_probs=94.2
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC-CCCCCCCcccCCCCHHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN-IPPAPPKGLLRMKSRALL 128 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~-LPpLPpK~l~r~~d~efL 128 (437)
..|+++.++.. ++++||+|.|+|.... ......|.|.||||||.+||++|++.||... .|+||+|.++++++++||
T Consensus 3 ~~i~~~~~~~~--~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~i 79 (112)
T cd07279 3 FEIVSARTVKE--GEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELI 79 (112)
T ss_pred EEeccCeEEcC--CCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHHH
Confidence 46788887655 4678999999996443 2234689999999999999999999999754 578999999888899999
Q ss_pred HHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 129 EERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
|+||.+||.||+.|+++|.+++|+.|++||+.+
T Consensus 80 e~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd07279 80 AERSRAFEQFLGHILSIPNLRDSKAFLDFLQGP 112 (112)
T ss_pred HHHHHHHHHHHHHHhCCHhhhcChHHHHHhCCC
Confidence 999999999999999999999999999999853
No 22
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.90 E-value=2.4e-23 Score=177.56 Aligned_cols=110 Identities=25% Similarity=0.456 Sum_probs=92.8
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC--HHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS--RAL 127 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d--~ef 127 (437)
|.|.....+.+ +..+|++|.|.+.+..+++....|.|.||||||.+||+.|++.+|...+|+||+|.+++..+ .+|
T Consensus 3 ~~V~~p~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 3 ISVTDPVKVGD--GMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred EEEeCcceecC--CccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 34444444333 45689999999976555445578999999999999999999999998899999998877655 359
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
||+||.+||.||+.|++||.+++|+.|+.||+.+
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 9999999999999999999999999999999864
No 23
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.90 E-value=4.8e-23 Score=178.43 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=93.0
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSR 125 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~----r~~d~ 125 (437)
|.|.......+ +.++|++|.|.+.+..+......|.|.||||||.+||+.|.+.+|...+||||+|..+ +.+++
T Consensus 3 v~V~dP~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 3 ITVDNPEKHVT--TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred EEEcCCeeccC--CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 44444443333 4578999999997666555568999999999999999999999999999999999753 35689
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 126 efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+|||+||++||.||++|++||.+++|+.|+.||..
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999974
No 24
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.89 E-value=4.4e-23 Score=181.80 Aligned_cols=108 Identities=27% Similarity=0.375 Sum_probs=93.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
|.|+|.......+..+.++||+|.|.+. . ..|.|.||||||.+||++|.+.||...+||||+|.+++.++++|
T Consensus 1 ~~~~v~~p~~~~~~~g~~~y~~Y~I~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~f 73 (125)
T cd06862 1 YHCTVTNPKKESKFKGLKSFIAYQITPT--H-----TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDF 73 (125)
T ss_pred CEEEEcCccccCCCCCCcCEEEEEEEEe--c-----CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHH
Confidence 3455555554333346689999999983 2 48999999999999999999999998899999999888888999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcch
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~ 162 (437)
||+||++||.||+.|++||.+++|+.|++||+.+.
T Consensus 74 ie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 74 IEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 99999999999999999999999999999999864
No 25
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.89 E-value=4.2e-23 Score=181.11 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=92.7
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------- 120 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~-------- 120 (437)
.|.|.......+ +.++|++|.|.+.+..+.+....|.|.||||||.+||+.|++. |...+||||+|.++
T Consensus 3 ~i~V~dP~~~~~--~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd06894 3 EIDVVNPQTHGV--GKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGD 79 (123)
T ss_pred EEEEeCCcEecC--CCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccc
Confidence 344444443333 4678999999996655555567999999999999999999876 88889999999764
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcch
Q 013768 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (437)
Q Consensus 121 -r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~ 162 (437)
++++++|||+||++||.||++|++||.+++|++|+.||+.+.
T Consensus 80 ~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~~ 122 (123)
T cd06894 80 DGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEET 122 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCCC
Confidence 456899999999999999999999999999999999998764
No 26
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.89 E-value=3.2e-23 Score=177.78 Aligned_cols=102 Identities=24% Similarity=0.435 Sum_probs=87.9
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--------
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-------- 121 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r-------- 121 (437)
|.|+....+.+. .+++|++|.|++. .|.|.||||||.+||+.|++.||...+||||+|..+.
T Consensus 2 ~~i~~~~~~~~~-~~~~y~~Y~I~~~---------~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 71 (112)
T cd06867 2 IQIVDAGKSSEG-GSGSYIVYVIRLG---------GSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSK 71 (112)
T ss_pred cEEccCccccCC-CccCEEEEEEEee---------eEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhcccccc
Confidence 456666654432 4578999999982 4999999999999999999999999999999996532
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 122 -~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
.++++|||+||++||.||+.|++||.+++|+.|++||+.+
T Consensus 72 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 72 AKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 3579999999999999999999999999999999999853
No 27
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.89 E-value=6.1e-23 Score=180.34 Aligned_cols=110 Identities=22% Similarity=0.335 Sum_probs=93.6
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-------
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR------- 121 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r------- 121 (437)
.|.|.....+.+ +.++|++|.|.+.+..|.+....|.|.||||||.|||+.|++. +.+.+||+|+|.++.
T Consensus 3 ~i~v~dP~~~~~--~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd07293 3 EIDVTNPQTVGV--GRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERE-SKVVVPPLPGKALFRQLPFRGD 79 (123)
T ss_pred EEEecCCeEecC--CCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhc-cCCccCCCCCCchhhhcccccc
Confidence 455555554444 4678999999997767666568999999999999999999865 678899999997652
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 122 --MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 122 --~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
+++++|+|+||++||+||++|++||.+++++.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 80 DGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 5679999999999999999999999999999999999875
No 28
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.89 E-value=6.9e-23 Score=180.85 Aligned_cols=111 Identities=27% Similarity=0.398 Sum_probs=98.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC--CH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK--SR 125 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~--d~ 125 (437)
+.|+|+++....+ .++++|++|.|+|....++.....|.|.||||||.+||++|++.||...+|+||+|++++.. ++
T Consensus 20 ~~i~I~~~~~~~~-~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~ 98 (133)
T cd06876 20 TRVSIQSYISDVE-EEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKT 98 (133)
T ss_pred ceEEEeeEEeeec-CCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCH
Confidence 5899999987443 34678999999997655432357999999999999999999999998889999999887765 79
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccC
Q 013768 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (437)
Q Consensus 126 efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLe 159 (437)
+|+++||.+||.||+.|+++|.+++|+.|..||.
T Consensus 99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 9999999999999999999999999999999995
No 29
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.89 E-value=6.8e-23 Score=180.64 Aligned_cols=110 Identities=24% Similarity=0.353 Sum_probs=92.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecC-----CCCCcceEEEccchhHHHHHHHHHHHCCCC---CCCCCCCCcc
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSP-----EGITTTRGVLRRFNNFLKLFTDLKKAFPKK---NIPPAPPKGL 119 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqsp-----eg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~---~LPpLPpK~l 119 (437)
|.|.|++...+.+ +++.|++|.|.|.+... +.....|+|.||||||.+||++|++.||.. .+| +|||++
T Consensus 9 w~~~I~~~~~~~~--~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP-~ppKk~ 85 (127)
T cd06878 9 WRANIQSAEVTVE--DDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELP-SLSKKW 85 (127)
T ss_pred ceEEEeeeEEEcC--CCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCC-CCCccc
Confidence 6889999986444 56789999999976531 234678999999999999999999999963 344 456666
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 120 ~r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
++..+++|||+||.+||+||+.|+++|.+++|++|++||+-
T Consensus 86 ~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 86 FKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 66678999999999999999999999999999999999974
No 30
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.89 E-value=5.8e-23 Score=182.13 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=91.6
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLE 129 (437)
++|-.....+...+.++|++|.|... ...|.|.||||||++||+.|.+.||.+.+||+|+|.++++++++|||
T Consensus 3 ~~v~dp~k~~~~~G~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FIe 75 (127)
T cd07286 3 CTIDDPTKQTKFKGMKSYISYKLVPS-------HTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFIS 75 (127)
T ss_pred EEeCCCcccCCCCCCcCEEEEEEEEe-------cCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHHH
Confidence 44444443333346678999999862 24799999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 130 ERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
+||++||.||++|++||.|++|+.|+.||+.+
T Consensus 76 ~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 76 KRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 99999999999999999999999999999986
No 31
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.89 E-value=8.2e-23 Score=177.48 Aligned_cols=104 Identities=27% Similarity=0.380 Sum_probs=94.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
..|+||++.. .+.|++|.|+|... ...|.|.||||||.+||+.|++.+ ....|+||+|+++++.+++|
T Consensus 4 ~~v~I~~~~~------~~~~~~Y~I~V~~~-----~~~w~V~RRYseF~~L~~~L~~~~-~~~~~~~P~Kk~~~~~~~~~ 71 (116)
T cd06875 4 TKIRIPSAET------VEGYTVYIIEVKVG-----SVEWTVKHRYSDFAELHDKLVAEH-KVDKDLLPPKKLIGNKSPSF 71 (116)
T ss_pred EEEEECCEEE------ECCEEEEEEEEEEC-----CeEEEEEecHHHHHHHHHHHHHHc-CcccCcCCCccccCCCCHHH
Confidence 4799999986 35799999999543 369999999999999999999999 45678899999999889999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
||+||.+||.||+.|++++.+++++.|++||++...
T Consensus 72 ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~ 107 (116)
T cd06875 72 VEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKY 107 (116)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCce
Confidence 999999999999999999999999999999999865
No 32
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.89 E-value=8.5e-23 Score=177.81 Aligned_cols=98 Identities=26% Similarity=0.341 Sum_probs=88.8
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSRALLEERRCSLEEW 138 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~----r~~d~efLEERR~aLE~Y 138 (437)
+.+.|++|.|.+....+.+....|.|.||||||.|||+.|.+.+|.+.+||+|+|.++ ++++++|||+||++||.|
T Consensus 14 ~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~F 93 (116)
T cd07283 14 TMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKF 93 (116)
T ss_pred CCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 4678999999998777777778999999999999999999999999999999999643 235799999999999999
Q ss_pred HHHHhcccCcCCCHHHHhccCc
Q 013768 139 MTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 139 Lq~LLs~P~L~~S~~V~eFLel 160 (437)
|++|++||.|++++.|+.||..
T Consensus 94 L~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 94 LKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999964
No 33
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.89 E-value=8.6e-23 Score=175.26 Aligned_cols=103 Identities=31% Similarity=0.376 Sum_probs=88.5
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-CCCCHHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-RMKSRAL 127 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~-r~~d~ef 127 (437)
.|.|.....+.. ++++|++|.|+|.... ...|.|.||||||.+||++|++ ++.. .|+||+|+++ ++.+++|
T Consensus 2 ~~~v~~~~~~~~--~~~~y~vY~I~v~~~~----~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~~~~~~f 73 (107)
T cd06872 2 SCRVLGAEIVKS--GSKSFAVYSVAVTDNE----NETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSSSLDGAF 73 (107)
T ss_pred eeEEeeeEEEec--CCccEEEEEEEEEECC----CceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCCCCCHHH
Confidence 467888877654 5678999999995322 3699999999999999999997 5654 5689999877 4668999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccC
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLe 159 (437)
||+||.+||.||+.|+++|.+++|+.|++||.
T Consensus 74 ie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 74 IEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred HHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 99999999999999999999999999999996
No 34
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.89 E-value=6.5e-23 Score=182.36 Aligned_cols=111 Identities=30% Similarity=0.380 Sum_probs=90.1
Q ss_pred EEeCCeEeccCCC--CCCCeEEEEEEEeee-----------cCCCCCcceEEEccchhHHHHHHHHHHHCCC--CCCCCC
Q 013768 50 VTIPSWVVLPKSR--DSDPVVFYRVQVGLQ-----------SPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--KNIPPA 114 (437)
Q Consensus 50 VsIPSw~~v~~s~--~sk~yVvY~IqV~vq-----------speg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--~~LPpL 114 (437)
|+||+|+..++.. +..+|++|+|++.+. .+++....|.|.||||||++||++|++..+. ...+++
T Consensus 2 ~~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~ 81 (132)
T cd06893 2 IRIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKG 81 (132)
T ss_pred ccccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCC
Confidence 7899999866543 457999999998532 2234467999999999999999999986331 112456
Q ss_pred CCCcc----cCCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 115 PPKGL----LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 115 PpK~l----~r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
|+|++ +++.+++|||+||++||+||++|+++|.+++|++|++||.+
T Consensus 82 P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 82 PPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 66654 56778999999999999999999999999999999999986
No 35
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.89 E-value=1.1e-22 Score=174.81 Aligned_cols=105 Identities=26% Similarity=0.402 Sum_probs=91.5
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
++|+||++..+.+. .+++|++|.|+|... ...|.|.||||||.+||+.|++.|+ +|+||+|+++ ..+++|
T Consensus 1 ~~V~Ip~~~~~~~~-~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~~-~~~~~~ 70 (110)
T cd06880 1 IEVSIPSYRLEVDE-SEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRVR-NWNPKV 70 (110)
T ss_pred CEEEeCcEEEeeCC-CCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCcc-CCCHHH
Confidence 47999999976553 367899999999543 2599999999999999999999987 8999999874 456899
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhh
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~ 164 (437)
||+||.+||.||+.|+.+|. .+..|.+||+++.+.
T Consensus 71 ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~ 105 (110)
T cd06880 71 LEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFP 105 (110)
T ss_pred HHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence 99999999999999999998 589999999998764
No 36
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.89 E-value=1.2e-22 Score=180.79 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=99.1
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL------- 120 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~------- 120 (437)
+.|.|.....+.+ +.++|++|.|.+.+..+.+....|.|.||||||.||++.|++. +.+.+||+|+|.++
T Consensus 4 ~~i~v~dP~~~~~--g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 4 LEIDIFNPQTVGV--GRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred EEEEeeCCeEecC--CCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCCCCceeccccccc
Confidence 4566666665544 5678999999987666655568999999999999999999865 67789999999752
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhhhhh
Q 013768 121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167 (437)
Q Consensus 121 --r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~Rs~ 167 (437)
++++++|||+||++||.||++|++||.+++++.|+.||+.++..|.+
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~~~~ 129 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETIDRNY 129 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcCccc
Confidence 24579999999999999999999999999999999999999887664
No 37
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.88 E-value=3e-22 Score=174.48 Aligned_cols=98 Identities=26% Similarity=0.382 Sum_probs=89.1
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CCCHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MKSRALLEERRCSLEEW 138 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r----~~d~efLEERR~aLE~Y 138 (437)
+.++|+.|.|.+.+..+......|.|.||||||.|||+.|.+.+|.+.+||+|+|.+++ .++++|||+||++||.|
T Consensus 14 ~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~F 93 (116)
T cd07284 14 AIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKALHKF 93 (116)
T ss_pred CCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCHHHHHHHHHHHHHH
Confidence 45789999999987777666789999999999999999999999999999999997543 35799999999999999
Q ss_pred HHHHhcccCcCCCHHHHhccCc
Q 013768 139 MTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 139 Lq~LLs~P~L~~S~~V~eFLel 160 (437)
|++|++||.+++++.|+.||..
T Consensus 94 L~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 94 LNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHcCcccccChHHHHhhcC
Confidence 9999999999999999999974
No 38
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.87 E-value=5.4e-22 Score=169.23 Aligned_cols=100 Identities=31% Similarity=0.497 Sum_probs=89.2
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLE 129 (437)
|+||++....+ .++++|++|.|.|. ..|.+.||||||.+||++|++.+|...+|+||+|++++. +.+|||
T Consensus 2 v~I~~~~~~~~-~~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~-~~~~ie 71 (104)
T cd06885 2 FSIPDTQELSD-EGGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLPL-TPAQLE 71 (104)
T ss_pred CccCCcceecc-CCCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccccC-CHHHHH
Confidence 78999876544 24678999999982 368899999999999999999999888999999998864 569999
Q ss_pred HHHHHHHHHHHHHhcccCcCCCHHHHhccC
Q 013768 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (437)
Q Consensus 130 ERR~aLE~YLq~LLs~P~L~~S~~V~eFLe 159 (437)
+||.+||.||+.|+++|.++.|+.|++||.
T Consensus 72 ~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~ 101 (104)
T cd06885 72 ERRLQLEKYLQAVVQDPRIANSDIFNSFLL 101 (104)
T ss_pred HHHHHHHHHHHHHhcChhhccCHHHHHHHH
Confidence 999999999999999999999999999995
No 39
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.87 E-value=6.4e-22 Score=169.06 Aligned_cols=89 Identities=29% Similarity=0.403 Sum_probs=83.3
Q ss_pred CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc
Q 013768 65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS 144 (437)
Q Consensus 65 k~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~LLs 144 (437)
..|++|.|.+. . ..|.|.||||||++||+.|++.||...+|+||+|+++++.+++|+|+||++||.||+.|++
T Consensus 16 ~~y~~Y~i~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~ 88 (105)
T cd06866 16 LKHVEYEVSSK--R-----FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVAR 88 (105)
T ss_pred cCCEEEEEEEe--c-----CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 48999999983 2 4899999999999999999999999999999999988888899999999999999999999
Q ss_pred ccCcCCCHHHHhccCc
Q 013768 145 DIDLSRSVSVASFLEL 160 (437)
Q Consensus 145 ~P~L~~S~~V~eFLel 160 (437)
||.+++|+.|+.||..
T Consensus 89 ~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 89 HPVLSEDELVRTFLTE 104 (105)
T ss_pred ChhhccChHHHhhcCC
Confidence 9999999999999974
No 40
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.87 E-value=9.5e-22 Score=174.26 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=85.5
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRALLEERRCSLEEWMTK 141 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~-~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~ 141 (437)
+.+.||.|.|... . ..+.|.||||||.|||+.|.+.||. ..+||+|+|.++++++++|||+||++||.||++
T Consensus 16 g~~~Yv~Y~I~~~--~-----~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FIe~Rr~~Le~FL~r 88 (126)
T cd07285 16 GLKSYIEYQLTPT--N-----TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTR 88 (126)
T ss_pred CCcCeEEEEEEec--c-----CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999873 2 4789999999999999999999974 458999999999989999999999999999999
Q ss_pred HhcccCcCCCHHHHhccCcchh
Q 013768 142 LLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 142 LLs~P~L~~S~~V~eFLele~~ 163 (437)
|++||.+++++.|+.||+....
T Consensus 89 i~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 89 MCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHcCcCcCCCcHHHHHhCCCCH
Confidence 9999999999999999998654
No 41
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.87 E-value=9.9e-22 Score=171.71 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=83.6
Q ss_pred CCCeEEEEEEEeee--cCCCCCcceEEEccchhHHHHHHHHHHHCCCC-----CCCCCCCCcccCCCCHHHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQ--SPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-----NIPPAPPKGLLRMKSRALLEERRCSLE 136 (437)
Q Consensus 64 sk~yVvY~IqV~vq--speg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~-----~LPpLPpK~l~r~~d~efLEERR~aLE 136 (437)
+++|++|.|.+.+- .+......|.|+||||||++||+.|...++.. .+||+|+|.++++++++|||+||++||
T Consensus 14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~fIeeRR~~Le 93 (118)
T cd07288 14 PKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAAVIEERRNAAE 93 (118)
T ss_pred CCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHHHHHHHHHHHH
Confidence 45699999997532 22223469999999999999999999877542 489999999999889999999999999
Q ss_pred HHHHHHhcccCcCCCHHHHhccCc
Q 013768 137 EWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 137 ~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+||++|++||.+++|+.|++||+-
T Consensus 94 ~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 94 AMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHhCChhhcCChHHHHHHhc
Confidence 999999999999999999999973
No 42
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.87 E-value=1.1e-21 Score=171.59 Aligned_cols=107 Identities=28% Similarity=0.406 Sum_probs=93.1
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efL 128 (437)
.|+||++...++ +++.|++|.|+|.+. ...|.|.||||||.+||++|++.+|....|+||+|+++++.+++|+
T Consensus 2 ~v~IPs~~~~g~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~i 74 (118)
T cd07277 2 NVWIPSVFLRGK--GSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFV 74 (118)
T ss_pred EEEcCcEEEecC--CCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHH
Confidence 589999997655 468899999999654 3699999999999999999999999877899999999888899999
Q ss_pred HHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 129 EERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
|+||.+||.||+.|+.+ .+..++.|..||.-.+.
T Consensus 75 e~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~~ 108 (118)
T cd07277 75 EERRKRLQVYLRRVVNT-LIQTSPELTACPSKETL 108 (118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHHHH
Confidence 99999999999999997 56666778777765543
No 43
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.86 E-value=2.5e-21 Score=169.41 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=82.9
Q ss_pred CCCeEEEEEEEeeecCC--CCCcceEEEccchhHHHHHHHHHHHCCC-----CCCCCCCCCcccCCCCHHHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPE--GITTTRGVLRRFNNFLKLFTDLKKAFPK-----KNIPPAPPKGLLRMKSRALLEERRCSLE 136 (437)
Q Consensus 64 sk~yVvY~IqV~vqspe--g~~~~w~V~RRYSDF~~Lh~~Lkk~fp~-----~~LPpLPpK~l~r~~d~efLEERR~aLE 136 (437)
+++|++|.|.+.+.... .....|.|+||||||.+||+.|.+.|+. ..+||+|+|+++++++++|||+||++||
T Consensus 14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~fIe~RR~~Le 93 (118)
T cd07287 14 PKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESVIEERRQCAE 93 (118)
T ss_pred CCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHHHHHHHHHHH
Confidence 45699999988543211 1125899999999999999999998863 3479999998899889999999999999
Q ss_pred HHHHHHhcccCcCCCHHHHhccCc
Q 013768 137 EWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 137 ~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+||++|++||.+++|++|++||+-
T Consensus 94 ~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 94 DLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHhcCccccCChHHHHHhcC
Confidence 999999999999999999999974
No 44
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.83 E-value=2e-20 Score=163.46 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=82.7
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
..+.|++|.|+|.. +......|.|.||||||.+||++|+... . .+|||+|+++++.+++|||+||.+||.||+.|
T Consensus 17 ~~~~~t~Y~I~v~~--~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~-~~plP~K~~~g~~~~~~ie~Rr~~Le~yL~~l 91 (120)
T cd06871 17 NIQSHTEYIIRVQR--GPSPENSWQVIRRYNDFDLLNASLQISG--I-SLPLPPKKLIGNMDREFIAERQQGLQNYLNVI 91 (120)
T ss_pred CccCcEEEEEEEEE--CCcCCceeEEEeeHHHHHHHHHHHHHcC--C-CCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 35689999999953 2222469999999999999999998642 2 34699999998888999999999999999999
Q ss_pred hcccCcCCCHHHHhccCcchhh
Q 013768 143 LSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 143 Ls~P~L~~S~~V~eFLele~~~ 164 (437)
+++|.+++|+.|++||+...+.
T Consensus 92 ~~~p~l~~s~~~~~FL~~~~~~ 113 (120)
T cd06871 92 LMNPILASCLPVKKFLDPNNYS 113 (120)
T ss_pred HcChhhccCHHHHHhcCcccCC
Confidence 9999999999999999866553
No 45
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.83 E-value=2.6e-20 Score=160.15 Aligned_cols=105 Identities=22% Similarity=0.372 Sum_probs=89.1
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALL 128 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~-~d~efL 128 (437)
|+|.++...- ....|++|.|.|+.... ...|.|.||||||.+||.+|++.||...+|+||+|+++++ ++++++
T Consensus 2 ~~i~~~~~~~---~~~~~~vY~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~ 75 (109)
T cd06883 2 VSVFGFQKRY---SPEKYYIYVVKVTRENQ---TEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVA 75 (109)
T ss_pred cEEEEEEEEe---cCCceEEEEEEEEECCC---CCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHH
Confidence 6777776421 24579999999965432 3679999999999999999999999999999999987765 457999
Q ss_pred HHHHHHHHHHHHHHhcc-cCcCCCHHHHhccCc
Q 013768 129 EERRCSLEEWMTKLLSD-IDLSRSVSVASFLEL 160 (437)
Q Consensus 129 EERR~aLE~YLq~LLs~-P~L~~S~~V~eFLel 160 (437)
++||.+||+||+.|++. +.+++|+.|++||..
T Consensus 76 e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 76 ERRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 99999999999999997 599999999999964
No 46
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.83 E-value=2.9e-20 Score=162.82 Aligned_cols=91 Identities=33% Similarity=0.461 Sum_probs=81.8
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
+++.|++|.|+|.+...+ ...|.|.||||||.+||++|++.||...+|+||+|++ .++|+||.+||.||+.|
T Consensus 29 ~~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~L 100 (119)
T cd06869 29 RSKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSL 100 (119)
T ss_pred CCCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHH
Confidence 467899999999665432 4699999999999999999999999999999999975 58899999999999999
Q ss_pred hcccCcCCCHHHHhccCcc
Q 013768 143 LSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 143 Ls~P~L~~S~~V~eFLele 161 (437)
+++|.+++|+.|++||..+
T Consensus 101 l~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 101 LKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred hcChhhhcChHHHHhhCCC
Confidence 9999999999999999753
No 47
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.83 E-value=7.7e-20 Score=148.83 Aligned_cols=105 Identities=35% Similarity=0.590 Sum_probs=93.2
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLE 129 (437)
|.|+.+....+ +.+.+++|.|+|.... ...|.|.|||+||.+||+.|++.++...+|+||+|.++...+.++++
T Consensus 2 i~I~~~~~~~~--~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~ 75 (106)
T cd06093 2 VSIPDYEKVKD--GGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIE 75 (106)
T ss_pred EEeCCceEEcC--CCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHH
Confidence 67888876433 4678999999996443 36999999999999999999999998899999999887777789999
Q ss_pred HHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 130 ERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+|+.+||.||+.|+++|.+.+++.|..||+.
T Consensus 76 ~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 76 ERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred HHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 9999999999999999999999999999974
No 48
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.83 E-value=3.7e-20 Score=152.83 Aligned_cols=93 Identities=35% Similarity=0.621 Sum_probs=81.8
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWMT 140 (437)
Q Consensus 64 sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r---~~d~efLEERR~aLE~YLq 140 (437)
.+.+++|.|+|.+..+ ...|.|.||||||.+||+.|++.+|...+|+||+|.+++ ..+++++++|+.+||.||+
T Consensus 9 ~~~~~~~~~~v~~~~~---~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~ 85 (105)
T smart00312 9 DGKHYYYVIEIETKTG---LEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQ 85 (105)
T ss_pred CCceEEEEEEEEECCC---CceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHH
Confidence 4456777777765544 369999999999999999999999988999999998765 4679999999999999999
Q ss_pred HHhcccCcCC-CHHHHhccC
Q 013768 141 KLLSDIDLSR-SVSVASFLE 159 (437)
Q Consensus 141 ~LLs~P~L~~-S~~V~eFLe 159 (437)
.|+++|.+++ |++|.+||+
T Consensus 86 ~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 86 SLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHcCHhhhccChHHHHhcC
Confidence 9999999999 999999996
No 49
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.82 E-value=6.7e-20 Score=161.01 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=90.0
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCcc
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGL 119 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--------~~LPpLPpK~l 119 (437)
..++|+..... .+.+.|++|.|+|.... ...|.|+||||||.+||++|++.||. ..+|+||+|.+
T Consensus 4 i~~~I~~~~~~---~~~~~y~vY~I~v~~~~----~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~ 76 (123)
T cd06882 4 VSATIADIEEK---RGFTNYYVFVIEVKTKG----GSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIY 76 (123)
T ss_pred EEEEEeeeeEE---eCCCCEEEEEEEEEEcC----CCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCee
Confidence 45667765432 35678999999996533 25899999999999999999999995 36899999988
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccC-cCCCHHHHhccCcch
Q 013768 120 LRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA 162 (437)
Q Consensus 120 ~r~~d~efLEERR~aLE~YLq~LLs~P~-L~~S~~V~eFLele~ 162 (437)
++..+ +|+|+||.+||.||+.|++.|. +++|+.|++||....
T Consensus 77 ~~~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~ 119 (123)
T cd06882 77 VGRKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTE 119 (123)
T ss_pred cCccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCc
Confidence 87665 9999999999999999999885 999999999998653
No 50
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.82 E-value=7.4e-20 Score=161.99 Aligned_cols=99 Identities=27% Similarity=0.442 Sum_probs=86.6
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efL 128 (437)
.|+||+|...++ +.+.|++|.|.|... ...|.|.||||||.+||++|++.||....|+||+|+++++.+++|+
T Consensus 2 ~i~Ip~~~~~~~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~i 74 (127)
T cd06874 2 KITIPRYVLRGQ--GKDEHFEFEVKITVL-----DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVA 74 (127)
T ss_pred EEEECCeEEecC--CCCcEEEEEEEEEEC-----CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHH
Confidence 589999986443 567899999999542 2589999999999999999999999877889999999998889999
Q ss_pred HHHHHHHHHHHHHHhc-ccCcCCCHHH
Q 013768 129 EERRCSLEEWMTKLLS-DIDLSRSVSV 154 (437)
Q Consensus 129 EERR~aLE~YLq~LLs-~P~L~~S~~V 154 (437)
|+||.+||.||+.|++ .+.+..|+.+
T Consensus 75 e~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 75 KERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHHHHHhchhccCCccc
Confidence 9999999999999998 5788888754
No 51
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.82 E-value=1.2e-19 Score=163.42 Aligned_cols=118 Identities=21% Similarity=0.297 Sum_probs=100.2
Q ss_pred CCCCCCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcce-EEEccchhHHHHHHHHHHHCCCCCCCCCCCC
Q 013768 39 PHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR-GVLRRFNNFLKLFTDLKKAFPKKNIPPAPPK 117 (437)
Q Consensus 39 phd~rtgwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w-~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK 117 (437)
|.-......+.|.|.....+ ++.+++|.+.+.+..|.+....+ .|.||||||+|||+.|...++.+.+||+|+|
T Consensus 21 ~~~~~~~~~l~i~Vtd~ek~-----G~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k 95 (140)
T cd06891 21 PERKKPKYFLRVRVTGIERN-----KSKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLP 95 (140)
T ss_pred ccccCCCceEEEEEeCceec-----CCCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCc
Confidence 44444567778888877654 33678888888777777766666 7999999999999999999999999999999
Q ss_pred cc-cCCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 118 GL-LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 118 ~l-~r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
.+ ++.++.+|+++||++||.||++|++||.|.+++.|+.|||.+
T Consensus 96 ~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 96 STSYGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 74 466778999999999999999999999999999999999864
No 52
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.78 E-value=1.3e-18 Score=150.89 Aligned_cols=94 Identities=21% Similarity=0.453 Sum_probs=84.1
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALLEERRCSLEEWMTK 141 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~-~d~efLEERR~aLE~YLq~ 141 (437)
..++|++|.|.|....+ ...|.|+|||+||.+||.+|++.||...+|+||+|++++. +++++.|+|+.+||+||+.
T Consensus 14 ~~~~~yvY~I~V~~~~~---~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~~~L~~Yl~~ 90 (111)
T cd06884 14 DPEKYYVYVVEVTRENQ---ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRKQDIQQFLNS 90 (111)
T ss_pred cCCCeEEEEEEEEEcCC---CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHHHHHHHHHHH
Confidence 46789999999965443 4689999999999999999999999989999999987764 5689999999999999999
Q ss_pred Hhc-ccCcCCCHHHHhccC
Q 013768 142 LLS-DIDLSRSVSVASFLE 159 (437)
Q Consensus 142 LLs-~P~L~~S~~V~eFLe 159 (437)
|++ .|++++|+.|.+|+.
T Consensus 91 Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 91 LFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred HHcCCHHHhcChHHHHhcC
Confidence 999 589999999999986
No 53
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.77 E-value=2.3e-18 Score=141.68 Aligned_cols=107 Identities=32% Similarity=0.527 Sum_probs=91.0
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC---C
Q 013768 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM---K 123 (437)
Q Consensus 47 Sy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~---~ 123 (437)
...|.|.+.... ..+..++|.++|..... ...|.|.|||+||.+||+.|++.++...+|+||+|.++.. .
T Consensus 3 ~~~v~v~~~~~~----~~~~~~~~~~~i~~~~~---~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~ 75 (113)
T PF00787_consen 3 IIQVSVVDPETS----GNKKKTYYIYQIELQDG---KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNL 75 (113)
T ss_dssp EEEEEEEEEEEE----SSSSEEEEEEEEEETTS---SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTT
T ss_pred EEEEEEcCCEEE----cCCCEEEEEEEEEECCC---CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccc
Confidence 456777766643 24456777777755543 5799999999999999999999999999999999977664 6
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 124 d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+++++++|+..||.||+.|+++|.+.+++.|.+||+.
T Consensus 76 ~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 76 DPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLES 112 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCC
Confidence 7999999999999999999999999999999999985
No 54
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=9.2e-19 Score=156.34 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=98.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRA 126 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~-~d~e 126 (437)
..|.|+...+... +...|+-|.|.+.+..|.+....-+|.||||||.||++.|+.....+.+|+||.|.++++ ...+
T Consensus 18 LeI~V~nPrt~~~--~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre 95 (144)
T KOG2527|consen 18 LEIDVINPRTHGD--GKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFRE 95 (144)
T ss_pred EEEEeeCCccccc--ccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHH
Confidence 5666666664222 456799999999888887777888999999999999999999998899999999976654 4469
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhh
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~ 164 (437)
||||||++||.||++++.||.+.++..|..||..+...
T Consensus 96 ~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~~ 133 (144)
T KOG2527|consen 96 FIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELID 133 (144)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhhc
Confidence 99999999999999999999999899999999887654
No 55
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.74 E-value=5.2e-18 Score=152.69 Aligned_cols=108 Identities=24% Similarity=0.335 Sum_probs=88.1
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC----
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---- 121 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk--~fp~~~LPpLPpK~l~r---- 121 (437)
+.|.|..... ...+|.|.|...+..+.+....+.|.||||||.|||++|.. .++++.+||+|+|..+.
T Consensus 3 l~i~vsD~~~------~~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~ 76 (141)
T cd07291 3 LQIDIPDALS------ERDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPRE 76 (141)
T ss_pred cEEEeccccc------cCCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHH
Confidence 4555555442 23469999999877787778899999999999999999996 67999999999997652
Q ss_pred -----------CCCHHHHHHH--------------HHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 122 -----------MKSRALLEER--------------RCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 122 -----------~~d~efLEER--------------R~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
+...+|++.| +++||.||++|++||.+++++.|+.||+.+
T Consensus 77 k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 77 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 1235777755 467999999999999999999999999864
No 56
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.74 E-value=8e-18 Score=151.90 Aligned_cols=108 Identities=25% Similarity=0.315 Sum_probs=91.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCccc-----
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLL----- 120 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~--fp~~~LPpLPpK~l~----- 120 (437)
..|.|+.... ...+|.|.|...+..+.+....+.|.|||+||.|||++|... |+++.+||+|+|..+
T Consensus 3 ~~~~i~da~~------~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~ 76 (141)
T cd06892 3 LQVDISDALS------ERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASRE 76 (141)
T ss_pred eeeecccccc------cCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccc
Confidence 4566665442 345899999998888887789999999999999999999976 799999999999643
Q ss_pred ---------CCCCHHHHHHHHHHH---------------HHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 121 ---------RMKSRALLEERRCSL---------------EEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 121 ---------r~~d~efLEERR~aL---------------E~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
+....+|+++||+.| |.||++|+.||.+.++..|+.||+.+
T Consensus 77 k~~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~ 141 (141)
T cd06892 77 KLQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE 141 (141)
T ss_pred eeeecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence 124579999999999 58999999999999999999999864
No 57
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.73 E-value=2e-17 Score=148.85 Aligned_cols=107 Identities=22% Similarity=0.305 Sum_probs=86.9
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-------C-------------
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-------P------------- 107 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~f-------p------------- 107 (437)
..|.|.++...........+++|.|+|+ .+ ...|.|.|||+||.+||++|++.+ |
T Consensus 4 i~a~I~~~er~~~~~~~~~~~~Y~Iev~--~g---~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~ 78 (140)
T cd06895 4 IKARITDVERSGTTRHLLNPNLYTIELQ--HG---QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKR 78 (140)
T ss_pred cEEEEeEEeccCCCCCCCceEEEEEEEE--EC---CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhcccc
Confidence 3677888764322222567899999994 33 369999999999999999999873 2
Q ss_pred ---------CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 108 ---------KKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 108 ---------~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
...+|+||.|...+. .++++++||++||.||+.|+.+|.+.++.++.+||+.
T Consensus 79 ~~~~~~~~~~~~lP~lP~~~~~~~-~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 79 SRKPEREKKNRRLPSLPALPDILV-SEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred ccccccccccccCCCCCCcccccc-CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 235888888875553 6899999999999999999999999999999999986
No 58
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.73 E-value=1.8e-17 Score=143.95 Aligned_cols=104 Identities=21% Similarity=0.379 Sum_probs=86.7
Q ss_pred EEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHH
Q 013768 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALL 128 (437)
Q Consensus 50 VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d-~efL 128 (437)
|+|+++..... .+.|.+|.|+|..... ....| |+|||+||.+||++|++.||...+|.||+|.++++.. ++.+
T Consensus 2 ~~V~~f~Kr~~---p~k~yvY~i~V~~~~~--~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~va 75 (109)
T cd07289 2 VSVFTYHKRYN---PDKHYIYVVRILREGQ--IEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVA 75 (109)
T ss_pred cEEeeEEEEEc---CCCeEEEEEEEEECCC--ceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHH
Confidence 68888864322 3456799999965432 11255 9999999999999999999988899999998887653 7999
Q ss_pred HHHHHHHHHHHHHHhc-ccCcCCCHHHHhccC
Q 013768 129 EERRCSLEEWMTKLLS-DIDLSRSVSVASFLE 159 (437)
Q Consensus 129 EERR~aLE~YLq~LLs-~P~L~~S~~V~eFLe 159 (437)
|+|+.+|+.||+.|++ .+++++|+.|..|++
T Consensus 76 e~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 76 AKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 9999999999999998 668999999999986
No 59
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.71 E-value=6.5e-17 Score=139.61 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=86.5
Q ss_pred EEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCccc
Q 013768 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGLL 120 (437)
Q Consensus 49 ~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--------~~LPpLPpK~l~ 120 (437)
.++|+++... +.+++|.|+|+... ...|.|.|||+||.+||.+|.+.||. ..+|+||+|...
T Consensus 2 ~~~V~~~~~~------~~~y~Y~i~v~~s~----~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~ 71 (112)
T cd06890 2 SASVESVLLE------DNRYWYRVRATLSD----GKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD 71 (112)
T ss_pred eEEEEEEEEE------CCEEEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC
Confidence 4778888752 45889999997655 37999999999999999999999993 358889877544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccc-CcCCCHHHHhccCc
Q 013768 121 RMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLEL 160 (437)
Q Consensus 121 r~~d~efLEERR~aLE~YLq~LLs~P-~L~~S~~V~eFLel 160 (437)
. .+.+++|+||.+|+.||+.|+..| .+.+|+.|++||..
T Consensus 72 ~-~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 72 V-VNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred c-chhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 3 467999999999999999999999 99999999999974
No 60
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.71 E-value=7.1e-17 Score=140.17 Aligned_cols=93 Identities=22% Similarity=0.354 Sum_probs=81.2
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHHHHHHHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALLEERRCSLEEWMTKL 142 (437)
Q Consensus 64 sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d-~efLEERR~aLE~YLq~L 142 (437)
.+.|.+|.|+|..... ...|.|.|||+||.+||++|++.||...+|.||+|.++++.+ ++.+|+|+.+|+.||+.|
T Consensus 13 p~k~y~Y~I~V~~~~~---~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~L 89 (109)
T cd07290 13 PSKGYAYVVKVQREGH---KEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHL 89 (109)
T ss_pred CCCcEEEEEEEEECCC---ceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHH
Confidence 3457779999965432 356999999999999999999999988899999998887655 799999999999999887
Q ss_pred hc-ccCcCCCHHHHhccC
Q 013768 143 LS-DIDLSRSVSVASFLE 159 (437)
Q Consensus 143 Ls-~P~L~~S~~V~eFLe 159 (437)
+. .|+|++|+.|.+|+.
T Consensus 90 l~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 90 IHAPPEVAECDLVYTFFH 107 (109)
T ss_pred HcCChheecCHHHHHhcc
Confidence 75 789999999999986
No 61
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.70 E-value=4.4e-17 Score=146.69 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=87.6
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCcccCC--
Q 013768 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLLRM-- 122 (437)
Q Consensus 47 Sy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~--fp~~~LPpLPpK~l~r~-- 122 (437)
+..|.|..... .+ ..|.|.|...+..+.+....+.|.||||||.|||++|..+ ++++.+||+|+|..+..
T Consensus 2 ~l~v~isD~~~-----~~-d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~ 75 (141)
T cd07292 2 ALQVDISDALS-----ER-DKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASR 75 (141)
T ss_pred ceEEEcccccc-----cC-CceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchH
Confidence 35666666543 12 2499999998887877788999999999999999999965 78999999999975521
Q ss_pred -------------CCHHHHH--------------HHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 123 -------------KSRALLE--------------ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 123 -------------~d~efLE--------------ERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
...+|.+ +|+++||.|||+|++||.++++..|+.||+-
T Consensus 76 ~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 76 EKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 1134442 7779999999999999999999999999985
No 62
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.70 E-value=8.2e-17 Score=141.35 Aligned_cols=92 Identities=27% Similarity=0.419 Sum_probs=81.1
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCCCHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMKSRALLEERRCS 134 (437)
Q Consensus 64 sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~---------~~LPpLPpK~l~r~~d~efLEERR~a 134 (437)
.++|.+|.|.|.... ...|.|+|||+||..||.+|++.||. ..+|+||+|.++++. +++|+||.+
T Consensus 15 ~~~~y~Y~i~v~~s~----~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~~~--~v~e~Rr~~ 88 (118)
T cd06887 15 PSQHYVYMFLVKWQD----LSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFDGQ--RAAENRQGT 88 (118)
T ss_pred CCCcEEEEEEEEEcC----CcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccCcc--hHHHHHHHH
Confidence 567999999996543 36899999999999999999999995 679999999877654 999999999
Q ss_pred HHHHHHHHhc-ccCcCCCHHHHhccCcc
Q 013768 135 LEEWMTKLLS-DIDLSRSVSVASFLELE 161 (437)
Q Consensus 135 LE~YLq~LLs-~P~L~~S~~V~eFLele 161 (437)
||.||+.|+. .+.+++|+.|+.||+..
T Consensus 89 L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 89 LTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred HHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 9999999976 66899999999999864
No 63
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.68 E-value=2e-16 Score=138.94 Aligned_cols=94 Identities=24% Similarity=0.369 Sum_probs=81.1
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---------CCCCCCCCcccCCCC-HHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---------NIPPAPPKGLLRMKS-RALLEERR 132 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~---------~LPpLPpK~l~r~~d-~efLEERR 132 (437)
..+.|.+|.|.|....+ ..|.|+|||+||.+||.+|++.||.. .+|.||+|.++++.. .+++|+|+
T Consensus 14 ~~~k~y~Y~i~V~~~dg----~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~~~~~e~R~ 89 (119)
T cd06888 14 APSKHYVYIINVTWSDG----SSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHIRDVAVKRL 89 (119)
T ss_pred cCCCcEEEEEEEEEcCC----CEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchhHHHHHHHH
Confidence 34567799999976543 68999999999999999999999952 599999998887654 67999999
Q ss_pred HHHHHHHHHHhcc-cCcCCCHHHHhccCc
Q 013768 133 CSLEEWMTKLLSD-IDLSRSVSVASFLEL 160 (437)
Q Consensus 133 ~aLE~YLq~LLs~-P~L~~S~~V~eFLel 160 (437)
..|+.||+.|++. +.|++|+.|..|++.
T Consensus 90 ~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 90 KPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 9999999999985 578899999999864
No 64
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.8e-15 Score=158.04 Aligned_cols=117 Identities=25% Similarity=0.341 Sum_probs=98.5
Q ss_pred cEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-C---
Q 013768 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-R--- 121 (437)
Q Consensus 46 wSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~-r--- 121 (437)
+..+|.++.-.. .-..+.+.|+.|.|.+.+..+......+.|.||||||++||..|...||.+.+||+|+|... .
T Consensus 108 ~~~~i~~~~~~~-~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~ 186 (503)
T KOG2273|consen 108 LDLSITVSDPEP-EIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSG 186 (503)
T ss_pred hheeeecCCCcc-ccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhcccc
Confidence 334555555441 11235678999999998887777678899999999999999999999999999999999643 3
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 122 -~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
.++++|+++||++|++||++++.||.|++++.|+.||+.+..
T Consensus 187 ~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~ 229 (503)
T KOG2273|consen 187 DSFSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSK 229 (503)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhccccc
Confidence 457899999999999999999999999999999999999954
No 65
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.55 E-value=3.1e-14 Score=127.96 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=76.5
Q ss_pred EEEeCCeEeccCCC--CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcc-------
Q 013768 49 CVTIPSWVVLPKSR--DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL------- 119 (437)
Q Consensus 49 ~VsIPSw~~v~~s~--~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l------- 119 (437)
.|.|-...-..... ..-.|++|.|.|+ .+ ...|.|.|||+||..||+.|.. +....--|||+|.+
T Consensus 5 ~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~--~g---~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~ 78 (135)
T cd07296 5 KARVLEVERFTSTSDVKKPSLNVYTIELT--HG---EFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTI 78 (135)
T ss_pred EEEEEEEEEeeccccccccceEEEEEEEE--eC---CEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhcccc
Confidence 44455444322222 3456999999994 33 4699999999999999999997 44322224678754
Q ss_pred ----------cCC-CCHHHHH----HHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 120 ----------LRM-KSRALLE----ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 120 ----------~r~-~d~efLE----ERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
+.. .+....| +||++||.||++|++.|.++++.++.+||+.
T Consensus 79 ~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 79 KRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred ccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 211 1222444 8999999999999999999999999999985
No 66
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.8e-14 Score=147.51 Aligned_cols=100 Identities=25% Similarity=0.365 Sum_probs=87.1
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
+-++|+.|.+.=+. ....|.|||..|.|||++|...|+...+|+||.|.+-+++..+||++||+.|+.||+.+
T Consensus 201 g~ks~i~y~ltpt~-------t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~~wm~~~ 273 (490)
T KOG2528|consen 201 GLKSYIAYQLTPTH-------TNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVTGRFEEDFIEKRRKGLQWWMNHM 273 (490)
T ss_pred cchheeEeeecccc-------cCcchhhcccccHHHHHHHHhhcccccCCCCCccccccchhHHHHHHHHHHHHHHHHHh
Confidence 56788888886532 23349999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcCCCHHHHhccCcchhhhhhhh
Q 013768 143 LSDIDLSRSVSVASFLELEAAARSSFQ 169 (437)
Q Consensus 143 Ls~P~L~~S~~V~eFLele~~~Rs~~q 169 (437)
+.||.+++|+.+..||.......+|.+
T Consensus 274 ~~hpvlsq~evf~hFl~c~~dek~Wk~ 300 (490)
T KOG2528|consen 274 CRHPVLSQCEVFQHFLTCPTDEKAWKQ 300 (490)
T ss_pred hcchHhhhhHHHHHHHcCCcccccccc
Confidence 999999999999999999744444544
No 67
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.40 E-value=1.6e-12 Score=115.05 Aligned_cols=93 Identities=27% Similarity=0.265 Sum_probs=79.5
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCC--CHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMK--SRALLEERR 132 (437)
Q Consensus 64 sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~---------~~LPpLPpK~l~r~~--d~efLEERR 132 (437)
.+.+.+|.|.|.... ...|.|+|||.||..||.+|++.||. +.+|.||.|.++++. ..+.-++|+
T Consensus 16 ~~~h~~Y~i~V~wsd----gs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~~~~~~~~a~~R~ 91 (121)
T cd06889 16 KRRHKTYMFSVLWSD----GSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGSLKGSTSRSLARL 91 (121)
T ss_pred ccceeEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCCcccccchHHHHH
Confidence 446789999997654 37899999999999999999999993 459999999877754 234578999
Q ss_pred HHHHHHHHHHhc-ccCcCCCHHHHhccCc
Q 013768 133 CSLEEWMTKLLS-DIDLSRSVSVASFLEL 160 (437)
Q Consensus 133 ~aLE~YLq~LLs-~P~L~~S~~V~eFLel 160 (437)
..|+.|++.|++ .|.|++|+.|..|+..
T Consensus 92 ~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 92 KLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred HHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 999999999998 6689999999999864
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=6.3e-12 Score=126.99 Aligned_cols=96 Identities=27% Similarity=0.402 Sum_probs=77.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
..+.|++|.|+|++- ...|.|.|||+||..||++|..+.. ..---||||++.+++++.|+|+||.+||-|||.|
T Consensus 23 ~~~~~t~y~i~v~~g-----~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~ig~~~~s~~e~r~~~leiylq~l 96 (490)
T KOG1259|consen 23 SSGGVTYYDIKVRVG-----KVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQEL 96 (490)
T ss_pred ccCceEEEEEEEEec-----ceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhcCCCChhHHHHHHHHHHHHHHHH
Confidence 466899999999654 3699999999999999999987654 1122478999999999999999999999999999
Q ss_pred hcccCcCCCHHHHhccCcchhh
Q 013768 143 LSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 143 Ls~P~L~~S~~V~eFLele~~~ 164 (437)
+.--.---..++.+||...-+.
T Consensus 97 l~~f~~~~pr~la~fl~f~~y~ 118 (490)
T KOG1259|consen 97 LIYFRTELPRALAEFLDFNKYD 118 (490)
T ss_pred HHHccccCHHHHHHHhccchHH
Confidence 9633222345789999877554
No 69
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.30 E-value=9.7e-12 Score=106.74 Aligned_cols=87 Identities=26% Similarity=0.351 Sum_probs=75.3
Q ss_pred EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc-cc
Q 013768 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DI 146 (437)
Q Consensus 68 VvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~LLs-~P 146 (437)
.+|.|+|....+ ..-.|+|+|.||.+||++|++.||...+|.||.++..+.++. -++|.+.|+.||+.|++ .+
T Consensus 13 ~lY~i~V~~sd~----~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~--~~~R~~~L~~Yl~~Ll~~~~ 86 (101)
T cd06896 13 NLYLVQVTQSCN----LVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDS--DHKRVRDLNHYLEQLLSGSR 86 (101)
T ss_pred eEEEEEEEEeCC----CcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccH--HHHHHHHHHHHHHHHHccCH
Confidence 369999965443 677899999999999999999999999999999986665543 47799999999999998 67
Q ss_pred CcCCCHHHHhccCc
Q 013768 147 DLSRSVSVASFLEL 160 (437)
Q Consensus 147 ~L~~S~~V~eFLel 160 (437)
++++|+.|.+|+..
T Consensus 87 eVa~sd~v~sFF~~ 100 (101)
T cd06896 87 EVANSDCVLSFFLS 100 (101)
T ss_pred HHhcchHHHHHhhc
Confidence 99999999999854
No 70
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.25 E-value=1.3e-11 Score=131.35 Aligned_cols=104 Identities=27% Similarity=0.297 Sum_probs=86.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcce---EEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR---GVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR--- 121 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w---~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r--- 121 (437)
-.|++|...... -...+.|+.|.|......+.+..... +|.||||||.+||..|...||.+.+||+|+|.+.+
T Consensus 133 ~~~~~p~s~~~~-~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~ 211 (524)
T COG5391 133 STVSNPQSLTLL-VDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYY 211 (524)
T ss_pred hccccchhcccc-cccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhcccc
Confidence 345666655433 11356799999998777776655555 99999999999999999999999999999998764
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHhcccCcCCCH
Q 013768 122 --MKSRALLEERRCSLEEWMTKLLSDIDLSRSV 152 (437)
Q Consensus 122 --~~d~efLEERR~aLE~YLq~LLs~P~L~~S~ 152 (437)
.++++|+++|++.|+.||+.++.||.+.++.
T Consensus 212 ~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 212 GDRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 6789999999999999999999999999865
No 71
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.2e-09 Score=112.21 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=80.6
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
+...|++|.|++ .....+.+|||+|..||+.|+++|....+|++|+|++|... +.-+++||.+||+||+.+
T Consensus 13 ~~~~ytaynih~--------nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L~-~~~~~~rr~~leqylqa~ 83 (407)
T KOG3784|consen 13 SLERYTAYNIHI--------NGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKLT-PQQLDSRRRGLEQYLQAV 83 (407)
T ss_pred Ccccccceeeee--------cceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCCC-hhhhHHHHHHHHHHHHHH
Confidence 456799999999 34677889999999999999999998999999999998754 699999999999999999
Q ss_pred hcccCcCCCHHHHhccCc
Q 013768 143 LSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 143 Ls~P~L~~S~~V~eFLel 160 (437)
+++|.+.++..+..||.-
T Consensus 84 ~q~~~l~~s~~~~~fL~~ 101 (407)
T KOG3784|consen 84 CQDPVLARSELVQKFLMR 101 (407)
T ss_pred hcCccccchhhhhHHHHh
Confidence 999999999999999843
No 72
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=98.89 E-value=7.4e-09 Score=92.67 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=65.1
Q ss_pred EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC---------------------CCCCCCCcccCCCCHH
Q 013768 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN---------------------IPPAPPKGLLRMKSRA 126 (437)
Q Consensus 68 VvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~---------------------LPpLPpK~l~r~~d~e 126 (437)
.+|+|++ +-+ .-.|.|.|||.+|..||+.|...--... +|.||.+.-. - .+
T Consensus 24 ~lYtIel--tHG---~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~mP~LP~~~~~--~-~~ 95 (130)
T cd07297 24 TLYTVRL--THG---EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEMPSLPGTDRE--A-SR 95 (130)
T ss_pred eeEEEEE--ecC---ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcCCCCCCCCch--h-hh
Confidence 6999999 333 2699999999999999999987432222 3334433110 0 24
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCc
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLel 160 (437)
-+..|+++||.||++|+..+..++..+..+||+.
T Consensus 96 ~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 96 RTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred hhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 5778999999999999999999999999999985
No 73
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=6.5e-07 Score=90.56 Aligned_cols=93 Identities=28% Similarity=0.324 Sum_probs=72.8
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-CCCC--CCCCC----CCcccCCCCHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-PKKN--IPPAP----PKGLLRMKSRALLEERRCSL 135 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~f-p~~~--LPpLP----pK~l~r~~d~efLEERR~aL 135 (437)
....|++|.|.|.+....-....|.|+|||+||..||.+|++.| |... .|..+ .+.++.+++..++.+|++.+
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 210 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEAL 210 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhH
Confidence 46789999999977654322457999999999999999999999 6543 34444 23466677899999999999
Q ss_pred HHHH--HHHhcccCcCCCHHHH
Q 013768 136 EEWM--TKLLSDIDLSRSVSVA 155 (437)
Q Consensus 136 E~YL--q~LLs~P~L~~S~~V~ 155 (437)
++|| +....++.+.++..+.
T Consensus 211 ~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 211 EEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred HHHHHhhhhhccccccchHHhh
Confidence 9999 7777777777766554
No 74
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.28 E-value=2.4e-06 Score=97.36 Aligned_cols=114 Identities=20% Similarity=0.320 Sum_probs=91.4
Q ss_pred CCCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 013768 42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121 (437)
Q Consensus 42 ~rtgwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r 121 (437)
+.+|.+-.|.|=.+..-- ..+.+..|.|+|+... ....-.++|-|-||.+||.+|+..||...+|.||-....+
T Consensus 1370 ~sdgRi~~v~v~~f~K~~---~pnK~YmYvveV~r~n---~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~g 1443 (1639)
T KOG0905|consen 1370 NSDGRISEVTVLKFEKHY---SPNKIYMYVVEVTREN---QAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLG 1443 (1639)
T ss_pred ccCCceEEEEEEEeeeec---cCCceEEEEEEEEecC---CCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeec
Confidence 445777777776665421 2456789999995432 2345568999999999999999999999999999887555
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHhc-ccCcCCCHHHHhccCcc
Q 013768 122 MK-SRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELE 161 (437)
Q Consensus 122 ~~-d~efLEERR~aLE~YLq~LLs-~P~L~~S~~V~eFLele 161 (437)
+. -.+.-|+|+..|+.||+.|++ .++++.|..|..|+..-
T Consensus 1444 rsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1444 RSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 44 478999999999999999997 67899999999999754
No 75
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.68 E-value=0.00018 Score=63.61 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=64.4
Q ss_pred CeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH-----CCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 013768 66 PVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA-----FPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (437)
Q Consensus 66 ~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~-----fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq 140 (437)
+-++|.|+|.++ .+.|.|.|+|-||..|.+.|... |. .+++||++...... ++++ ...|.+||.
T Consensus 26 ~e~~~~v~v~Cq-----grsw~VkRSyEdfr~LD~~LHrCvyDRrfS--~L~eLp~~~~l~~~-~~~v---~~~l~~YL~ 94 (115)
T cd07298 26 KELVYLVQIACQ-----GRSWIVKRSYEDFRVLDKHLHLCIYDRRFS--QLPELPRSDSLKDS-PESV---TQMLMAYLS 94 (115)
T ss_pred CCeEEEEEEEeC-----CCceEEEeeHHHHHHHHHHHHHHHHhhhhh--ccccCCCccccccc-HHHH---HHHHHHHHH
Confidence 457999999765 36999999999999999999887 43 38889987654433 5666 568999999
Q ss_pred HHhccc-CcCCCHHHHhccCc
Q 013768 141 KLLSDI-DLSRSVSVASFLEL 160 (437)
Q Consensus 141 ~LLs~P-~L~~S~~V~eFLel 160 (437)
++-..- ..-+|-.+.+||++
T Consensus 95 RlS~Ia~~~~nCGPvLtWlei 115 (115)
T cd07298 95 RLSAIAGNKINCGPALTWMEI 115 (115)
T ss_pred HHHHHhhCCccchhcceeeeC
Confidence 887633 34567788888874
No 76
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.36 E-value=0.00025 Score=72.95 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=75.0
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC---------CCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Q 013768 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP---------KKNIPPAPPKGLLRMKSRALLEERRCSLEE 137 (437)
Q Consensus 67 yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp---------~~~LPpLPpK~l~r~~d~efLEERR~aLE~ 137 (437)
+.||.|.|..... ....|+|||.||..++.+|++.|+ .+.+|+||.+.++... ++.-|+|...|..
T Consensus 38 hFvyVievkw~~~----se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfk-qe~Ae~r~~~ln~ 112 (386)
T KOG4773|consen 38 HFVYVIEVKWYGG----SEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFK-QEIAEERIPALNA 112 (386)
T ss_pred heEEEEEehhhcc----ccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechh-hhhhhhhhHHHHH
Confidence 7899998865543 588999999999999999999997 3678999999877655 6999999999999
Q ss_pred HHHHHhcccC-cCCCHHHHhccCc
Q 013768 138 WMTKLLSDID-LSRSVSVASFLEL 160 (437)
Q Consensus 138 YLq~LLs~P~-L~~S~~V~eFLel 160 (437)
|+.-|++-|. +..++.|.-|.-.
T Consensus 113 y~e~LlslPi~~l~~p~l~~fffv 136 (386)
T KOG4773|consen 113 YCEWLLSLPIGRLGGPGLRPFFFV 136 (386)
T ss_pred HHHHHHhcchhhcCCCCceeeeee
Confidence 9999999885 4567888877643
No 77
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.96 E-value=0.0064 Score=53.82 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=63.0
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (437)
Q Consensus 64 sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~---~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq 140 (437)
+..-++|.|+|..+. +.|.|.|.|-+|..|.+.|.+..-. -.+++||+--.... .++ .=...|.+||.
T Consensus 23 ~~k~~~~~v~V~cqg-----~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~~~-~~~---~~~~~l~~YL~ 93 (114)
T cd07278 23 SGKELVYLVQVQCQG-----KSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIEKR-EQQ---NLHQVLSDYLK 93 (114)
T ss_pred CCCceEEEEEEEeCC-----cceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccccc-hHH---HHHHHHHHHHH
Confidence 345689999997653 7999999999999999999875432 24677776433221 223 33467999999
Q ss_pred HHhccc-CcCCCHHHHhccCc
Q 013768 141 KLLSDI-DLSRSVSVASFLEL 160 (437)
Q Consensus 141 ~LLs~P-~L~~S~~V~eFLel 160 (437)
++-..- ..-+|-.+.+||++
T Consensus 94 RlS~Ia~~~inCGPvLtWlei 114 (114)
T cd07278 94 RLSSIAGNLLNCGPVLNWLEL 114 (114)
T ss_pred HHHHHhcCcccchhcceeeeC
Confidence 987643 45677888888875
No 78
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.48 E-value=0.01 Score=52.44 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=61.5
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 013768 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (437)
Q Consensus 64 sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~---~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq 140 (437)
.+..++|.|+|+.+ .+.|.|.|.|-||..|.+.|....-. -.+++||+---. .+ --+.=...|.+||.
T Consensus 22 ~~k~~~flv~V~cq-----grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l--~~--~~~~~~~~l~~YL~ 92 (113)
T cd07299 22 SEKDLVFLVQVTCQ-----GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEI--GD--RLQILTPLLSEYLN 92 (113)
T ss_pred CCCceEEEEEEEec-----CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccc--cc--hHHHHHHHHHHHHH
Confidence 34568999999665 36999999999999999999875331 246667765211 12 11334568999999
Q ss_pred HHhccc-CcCCCHHHHhccCc
Q 013768 141 KLLSDI-DLSRSVSVASFLEL 160 (437)
Q Consensus 141 ~LLs~P-~L~~S~~V~eFLel 160 (437)
++-..- ..-+|-+|..||++
T Consensus 93 RlS~Ia~~~inCGPVLtWmeI 113 (113)
T cd07299 93 RLTGIVDSNLNCGPVLTWMEI 113 (113)
T ss_pred HHHHHhcCCccccccceeeeC
Confidence 987633 34567788888874
No 79
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=95.81 E-value=0.012 Score=60.85 Aligned_cols=94 Identities=22% Similarity=0.375 Sum_probs=72.3
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC---------------CCCHHHHH
Q 013768 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---------------MKSRALLE 129 (437)
Q Consensus 67 yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk--~fp~~~LPpLPpK~l~r---------------~~d~efLE 129 (437)
-|-|+|++.+..|.+. ..+.|.|---+|+|||..+.. .|.+..+||.||+..|- +.-.+|+.
T Consensus 39 kvK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~K 117 (399)
T KOG1660|consen 39 KVKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLK 117 (399)
T ss_pred cceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHH
Confidence 4789999988888886 889999999999999988754 45577889989885332 11134443
Q ss_pred HHH--------------HHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 130 ERR--------------CSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 130 ERR--------------~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
-.. ..=|.||++|..||.++.+.-+.-||+.+
T Consensus 118 mK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~ 163 (399)
T KOG1660|consen 118 MKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYD 163 (399)
T ss_pred HHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhc
Confidence 222 12357899999999999999999999988
No 80
>PLN02866 phospholipase D
Probab=87.21 E-value=1.5 Score=51.49 Aligned_cols=93 Identities=19% Similarity=0.425 Sum_probs=64.8
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-------------------------C---------CCCCC
Q 013768 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-------------------------P---------KKNIP 112 (437)
Q Consensus 67 yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~f-------------------------p---------~~~LP 112 (437)
-..|+|++ +.. .-.|.+++.=|+-.-||-.|++.- + ...+|
T Consensus 32 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (1068)
T PLN02866 32 LLSYTIEL--QYK---QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVP 106 (1068)
T ss_pred EEEEEEEE--EEe---eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccccccccccccc
Confidence 45789988 544 358999999999888887776532 0 00111
Q ss_pred C----------CCCCc---ccC---CCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhh
Q 013768 113 P----------APPKG---LLR---MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 113 p----------LPpK~---l~r---~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~ 164 (437)
. .|... +++ ...+.+...++.+||.||+.++.+..+.++..+.+|||.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~ls 174 (1068)
T PLN02866 107 LHHDESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSKLS 174 (1068)
T ss_pred ccchhhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeeceee
Confidence 1 12111 222 1235677788888999999999999999999999999988543
No 81
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=44.18 E-value=26 Score=27.81 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHH--HhhcccHHHHHHHhhhhh
Q 013768 398 LSRVLLTMERRL--VTAKTDMEDLITRLNQEM 427 (437)
Q Consensus 398 ~~r~l~t~~~rl--~taktdmedli~rlnqe~ 427 (437)
|+++...+++-+ .....+++|+|.+||+-+
T Consensus 1 ik~~~~kik~~~~~~~~~~~~~~~i~~LN~~l 32 (80)
T PF08388_consen 1 IKRFRRKIKEITRRRNRGKSLEELIKKLNPIL 32 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 356666776655 224579999999999854
No 82
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.17 E-value=29 Score=34.03 Aligned_cols=36 Identities=14% Similarity=0.468 Sum_probs=31.4
Q ss_pred hhhHh-HHHHHHHHHHHhhcccHHHHHHHhhhhhhHh
Q 013768 395 RHKLS-RVLLTMERRLVTAKTDMEDLITRLNQEMTVK 430 (437)
Q Consensus 395 r~k~~-r~l~t~~~rl~taktdmedli~rlnqe~avk 430 (437)
.|.|| +-|.++|-.+.+.++|+..||+..|+-||=-
T Consensus 157 KHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ea 193 (201)
T PF11172_consen 157 KHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEA 193 (201)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 7899999999999999999999999988743
No 83
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=36.49 E-value=35 Score=30.95 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=29.0
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHH-------HHHhhhhhhH
Q 013768 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDL-------ITRLNQEMTV 429 (437)
Q Consensus 388 ~~~p~d~r~k~~r~l~t~~~rl~taktdmedl-------i~rlnqe~av 429 (437)
|+|=-..++||. .+-|||.+-..|.||| +.||||--|.
T Consensus 82 IFLiiQTgnkMd----dvSrRL~aEgKdIdeLKKiN~mIvkrLNQld~~ 126 (128)
T PF15145_consen 82 IFLIIQTGNKMD----DVSRRLTAEGKDIDELKKINSMIVKRLNQLDSE 126 (128)
T ss_pred HHheeeccchHH----HHHHHHHhccCCHHHHHHHHHHHHHHHhhhccc
Confidence 445556677765 4579999999999998 6799996554
No 84
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=31.01 E-value=40 Score=27.64 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=34.7
Q ss_pred EEeeccchhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhhhH
Q 013768 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTV 429 (437)
Q Consensus 388 ~~~p~d~r~k~~r~l~t~~~rl~taktdmedli~rlnqe~av 429 (437)
+=|+.+|+.|+..++...++.......+|.++-..|+.+++-
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~ 81 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAA 81 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 557899999999999999998888888888888777776653
No 85
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=30.00 E-value=44 Score=39.13 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=61.1
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCC---CC------CCcccCCCCHHHHHHHHHHHHH
Q 013768 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPP---AP------PKGLLRMKSRALLEERRCSLEE 137 (437)
Q Consensus 67 yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPp---LP------pK~l~r~~d~efLEERR~aLE~ 137 (437)
-..|+|.+ ..+ .-.|.|.+=+..|..||..|...-....+|. ++ +|.-....++...-+|+..+|.
T Consensus 66 ~~~y~v~L--~hG---~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~ 140 (887)
T KOG1329|consen 66 SGSYTVEL--LHG---TLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLEN 140 (887)
T ss_pred Ccceeeee--ecC---cEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccc
Confidence 35788888 333 4589999999999999998866322112221 00 0111111111111455566999
Q ss_pred HHHHHhcccCcCCCHHHHhccCcchhh
Q 013768 138 WMTKLLSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 138 YLq~LLs~P~L~~S~~V~eFLele~~~ 164 (437)
||..++..+.+.+.-.+.+||+..-..
T Consensus 141 Ylt~~l~~~~~~~t~~~~~f~e~s~~~ 167 (887)
T KOG1329|consen 141 YLTVVLHKARYRRTHVIYEFLENSRWS 167 (887)
T ss_pred hheeeechhhhhchhhhhcccccchhh
Confidence 999999999999999999999887553
No 86
>PF14980 TIP39: TIP39 peptide
Probab=29.10 E-value=48 Score=25.87 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=16.8
Q ss_pred CHHHHH--------HHHHHHHHHHHHHhc
Q 013768 124 SRALLE--------ERRCSLEEWMTKLLS 144 (437)
Q Consensus 124 d~efLE--------ERR~aLE~YLq~LLs 144 (437)
|..|-| |||+-|..|||+|+-
T Consensus 20 DaAFrerarLl~amER~~WLnSYMqkLLv 48 (51)
T PF14980_consen 20 DAAFRERARLLTAMERQKWLNSYMQKLLV 48 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456655 689999999999974
No 87
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.70 E-value=33 Score=40.90 Aligned_cols=17 Identities=53% Similarity=0.716 Sum_probs=15.6
Q ss_pred HHHhhhhhhHhhhhhcc
Q 013768 420 ITRLNQEMTVKDYLMTK 436 (437)
Q Consensus 420 i~rlnqe~avk~~l~tk 436 (437)
+.||-||||||+-||+|
T Consensus 1315 LdRLRQeVavke~lt~k 1331 (1714)
T KOG0241|consen 1315 LDRLRQEVAVKEALTTK 1331 (1714)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 36999999999999998
No 88
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.24 E-value=1e+02 Score=29.67 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=28.0
Q ss_pred hHhHHHHHHHHHHHhhc-------ccHHHHHHHhhhhhhH
Q 013768 397 KLSRVLLTMERRLVTAK-------TDMEDLITRLNQEMTV 429 (437)
Q Consensus 397 k~~r~l~t~~~rl~tak-------tdmedli~rlnqe~av 429 (437)
+=|++|-.+|.|..-|- +||-.||++-|.||-|
T Consensus 33 ~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~ 72 (194)
T PF15619_consen 33 KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRV 72 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34889999999977664 8999999999999975
No 89
>PF08951 EntA_Immun: Enterocin A Immunity; InterPro: IPR015046 Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species []. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc PF10439 from PFAM). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin []. The C-terminal hair-pin recognises the C terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates []. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, PF01721 from PFAM. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids []. ; PDB: 2BL8_C 2BL7_A 2K19_A 2FU2_A 1TDP_A 2IP6_A.
Probab=20.48 E-value=1.7e+02 Score=22.53 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=29.0
Q ss_pred hhhHhHHHHHHHHHHHhhcccHHHHHHHhhhhhh
Q 013768 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT 428 (437)
Q Consensus 395 r~k~~r~l~t~~~rl~taktdmedli~rlnqe~a 428 (437)
-..+..+|.+-..+|...+. .+-++.||++.++
T Consensus 22 ~~~lr~iL~~a~~~l~~~~~-~~~v~~~L~~~l~ 54 (75)
T PF08951_consen 22 NEELRKILLKAKNELEKGEN-VPLVASRLNNDLS 54 (75)
T ss_dssp GHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHH
Confidence 34688999999999999988 9999999998764
Done!