Query 013768
Match_columns 437
No_of_seqs 176 out of 1122
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq2_A Sorting nexin-7; SNX7, 99.9 3.1E-25 1E-29 195.4 11.1 118 48-167 9-130 (138)
2 3lui_A Sorting nexin-17, SNX17 99.9 1.3E-25 4.3E-30 191.7 8.1 107 48-163 4-110 (115)
3 2csk_A Sorting nexin 12; SNX12 99.9 2.2E-24 7.7E-29 190.3 9.3 114 48-164 11-133 (146)
4 2i4k_A Sorting nexin-1, SNX1; 99.9 3.9E-25 1.3E-29 189.0 3.3 112 48-161 4-127 (128)
5 1ocs_A Sorting nexin GRD19; so 99.9 8.7E-24 3E-28 190.6 10.8 115 48-162 36-159 (162)
6 3p0c_A Nischarin; structural g 99.9 4.2E-24 1.4E-28 186.5 6.5 109 49-163 17-126 (130)
7 1xte_A Serine/threonine-protei 99.9 1.5E-23 5.2E-28 187.2 9.4 109 48-164 8-117 (154)
8 1kmd_A VAM7P, vacuolar morphog 99.9 2.5E-23 8.5E-28 177.5 7.3 99 48-162 6-115 (117)
9 2v14_A Kinesin-like motor prot 99.9 7.5E-23 2.6E-27 179.2 10.3 100 48-154 6-106 (134)
10 4az9_A Sorting nexin-24; prote 99.9 1.7E-22 5.7E-27 176.7 11.3 106 47-163 22-127 (129)
11 1h6h_A Neutrophil cytosol fact 99.9 3.5E-22 1.2E-26 175.2 11.5 111 45-163 18-137 (143)
12 2ar5_A Phosphoinositide 3-kina 99.8 4.2E-21 1.4E-25 165.2 11.3 112 45-162 3-116 (121)
13 2ett_A Sorting nexin-22; PX do 99.8 2.1E-21 7.3E-26 169.5 8.6 92 63-164 28-119 (128)
14 4akv_A Sorting nexin-33; trans 99.8 8.3E-22 2.8E-26 199.1 5.2 108 48-162 42-149 (386)
15 3hpc_X SNX5 protein; sprting n 99.8 7.6E-21 2.6E-25 172.8 10.3 114 44-163 8-152 (161)
16 3dyt_A Sorting nexin-9; 3-heli 99.8 1.3E-21 4.4E-26 195.8 5.5 109 48-163 21-130 (366)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.8 2.8E-20 9.5E-25 163.5 12.9 110 45-163 4-123 (141)
18 2iwl_X Phosphatidylinositol-4- 99.8 7.7E-21 2.6E-25 167.1 7.3 112 44-161 17-130 (140)
19 2v6v_A BUD emergence protein 1 99.8 6.9E-19 2.4E-23 158.7 11.9 106 46-163 17-137 (156)
20 2l73_A NADPH oxidase organizer 99.7 2.3E-18 8E-23 154.2 9.3 96 63-162 22-128 (149)
21 2wwe_A Phosphoinositide-3-kina 99.7 5.7E-18 2E-22 149.2 7.3 106 42-160 20-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.6 1.5E-15 5.1E-20 150.1 11.3 111 45-163 21-140 (341)
23 3ra3_B P2F; coiled coil domain 52.3 6 0.00021 26.0 1.4 14 420-433 9-22 (28)
24 2k53_A A3DK08 protein; NESG, C 40.1 20 0.00069 28.3 3.1 30 405-434 41-70 (76)
25 1t3j_A Mitofusin 1; coiled coi 37.5 18 0.00061 30.5 2.5 40 396-435 32-71 (96)
26 2xv5_A Lamin-A/C; structural p 25.7 72 0.0024 25.3 4.0 29 393-421 5-33 (74)
27 3ogl_Q JAZ1 incomplete degron 23.9 42 0.0014 21.1 1.8 12 130-141 5-16 (21)
28 2xzd_B Caspase-3; hydrolase-pr 22.4 83 0.0028 26.7 4.1 20 411-430 52-71 (118)
29 2ql9_B Caspase-7; cysteine pro 22.4 81 0.0028 25.4 3.9 19 412-430 48-66 (97)
No 1
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.92 E-value=3.1e-25 Score=195.43 Aligned_cols=118 Identities=24% Similarity=0.306 Sum_probs=97.7
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CC
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MK 123 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r----~~ 123 (437)
+.|.|.....+.+ +.++||+|.|.|.+..+.+....|.|.||||||.+||+.|++.||...+|+||+|.+++ .+
T Consensus 9 l~i~V~dp~~~~~--g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ 86 (138)
T 3iq2_A 9 LFITVDEPESHVT--TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERF 86 (138)
T ss_dssp CEEEEEEEEEEEC--SSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGG
T ss_pred EEEEECCCEEecC--CCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccC
Confidence 3444555554433 46789999999977666666789999999999999999999999999999999998654 34
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhhhhh
Q 013768 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167 (437)
Q Consensus 124 d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~Rs~ 167 (437)
+++|||+||++||.||++|+++|.|++|+.|+.||+.+...++.
T Consensus 87 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~~~~~ 130 (138)
T 3iq2_A 87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSS 130 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCBC---
T ss_pred CHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCCCccc
Confidence 79999999999999999999999999999999999999887764
No 2
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.92 E-value=1.3e-25 Score=191.66 Aligned_cols=107 Identities=26% Similarity=0.372 Sum_probs=93.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
+.|+||++..+.+..+.++|++|.|+|. ..|.|.||||||.+||+.|++.||...+|+||+|.+++ .+++|
T Consensus 4 l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ 74 (115)
T 3lui_A 4 MHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPAE 74 (115)
T ss_dssp -CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHHH
T ss_pred EEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHHH
Confidence 5799999998765556689999999982 48999999999999999999999988899999998875 57899
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
||+||++||.||+.|+.||.+++|+.|+.||+.+..
T Consensus 75 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 75 VEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHH
Confidence 999999999999999999999999999999987754
No 3
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=190.35 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=96.4
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL------- 120 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~------- 120 (437)
+.|.|.....+.+ +.++|++|.|+|.+..+......|.|.||||||.+||+.|++. |...+|+||+|.++
T Consensus 11 l~i~V~dp~~~~~--g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~ 87 (146)
T 2csk_A 11 LEIDIFNPQTVGV--GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG 87 (146)
T ss_dssp CEEEEEEEEEESS--SSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCC
T ss_pred EEEEEcCceEecC--CCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccccc
Confidence 4455555554333 4678999999997665555567999999999999999999886 77889999999876
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhh
Q 013768 121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 121 --r~~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~ 164 (437)
++++++|||+||++||.||+.|++||.+++++.|+.||+.+...
T Consensus 88 ~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 133 (146)
T 2csk_A 88 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAID 133 (146)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchh
Confidence 46789999999999999999999999999999999999998654
No 4
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.90 E-value=3.9e-25 Score=188.97 Aligned_cols=112 Identities=29% Similarity=0.452 Sum_probs=96.5
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--CCCCCCCCCcccCC---
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--KNIPPAPPKGLLRM--- 122 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--~~LPpLPpK~l~r~--- 122 (437)
+.|.|++...+.+ +.++|++|.|+|.+..+.+....|.|.||||||.+||+.|++.||. ..+||||+|.+++.
T Consensus 4 l~v~V~~~~~~~~--g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~ 81 (128)
T 2i4k_A 4 LTVGITDPEKIGD--GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81 (128)
T ss_dssp CCCCBCCCCBCCC--SSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC
T ss_pred EEEEECCceEecC--CCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh
Confidence 4577888776543 4678999999997655555568999999999999999999999974 68999999987653
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcc
Q 013768 123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (437)
Q Consensus 123 -------~d~efLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele 161 (437)
++++|||+||++||.||+.|++||.+++|+.|+.||+.+
T Consensus 82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 378999999999999999999999999999999999876
No 5
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.90 E-value=8.7e-24 Score=190.63 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=98.2
Q ss_pred EEEEeCCeEecc--CCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-----CCCCCCCCCCCccc
Q 013768 48 YCVTIPSWVVLP--KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-----PKKNIPPAPPKGLL 120 (437)
Q Consensus 48 y~VsIPSw~~v~--~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~f-----p~~~LPpLPpK~l~ 120 (437)
+.|.|.....+. ...+.++|++|.|+|.+..+.+....|.|.||||||.+||+.|++.| |...+|+||+|.++
T Consensus 36 l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~ 115 (162)
T 1ocs_A 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL 115 (162)
T ss_dssp EEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCS
T ss_pred EEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCccc
Confidence 566665555431 11356789999999987766666789999999999999999999999 88999999999876
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCcCC-CHHHHhccCcch
Q 013768 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLELEA 162 (437)
Q Consensus 121 -r~~d~efLEERR~aLE~YLq~LLs~P~L~~-S~~V~eFLele~ 162 (437)
++++++|||+||++||.||+.|+.||.+++ |+.|+.||+.+.
T Consensus 116 ~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 116 SNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence 456899999999999999999999999998 999999998764
No 6
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.89 E-value=4.2e-24 Score=186.50 Aligned_cols=109 Identities=25% Similarity=0.277 Sum_probs=92.5
Q ss_pred EEEeCCeEeccC-CCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 49 CVTIPSWVVLPK-SRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 49 ~VsIPSw~~v~~-s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
+|.||++.+... ....++|++|.|+|... ...|.|.||||||.+||++|++.+|. .+|+||+|+++++++++|
T Consensus 17 ~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~g~~~~~~ 90 (130)
T 3p0c_A 17 NLYFQSMEARVVGSELVDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKIIGKNSRSL 90 (130)
T ss_dssp CCCEECCEEEEEEEECSSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCCSCCCSCS
T ss_pred eeEeeeeEEEEEeccccCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccccccCCHHH
Confidence 455666554221 12357899999999542 47999999999999999999999985 478999999988888999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
||+||++||.||+.|+++|.+++|+.|++||+.+.+
T Consensus 91 ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 126 (130)
T 3p0c_A 91 VEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCcc
Confidence 999999999999999999999999999999998765
No 7
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.89 E-value=1.5e-23 Score=187.22 Aligned_cols=109 Identities=27% Similarity=0.449 Sum_probs=96.6
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA 126 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r-~~d~e 126 (437)
..|+|+++..+.+ +.+.|++|.|+|... ...|.|.||||||.+||+.|++.||...+ |||+|++++ +++++
T Consensus 8 ~~v~I~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~~~~~~ 79 (154)
T 1xte_A 8 PSVSIPSSDEHRE--KKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDNFDPD 79 (154)
T ss_dssp CEEEEEEEEEEEE--TTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSCTTCHH
T ss_pred CEEEECCcEEEec--CCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCCCCCHH
Confidence 5789999987654 467899999999642 36899999999999999999999997654 599999888 77899
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchhh
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~~ 164 (437)
|||+||++||.||+.|+.+|.+++|+.|+.||+.+...
T Consensus 80 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~ 117 (154)
T 1xte_A 80 FIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPR 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGG
T ss_pred HHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCCc
Confidence 99999999999999999999999999999999998654
No 8
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.88 E-value=2.5e-23 Score=177.50 Aligned_cols=99 Identities=24% Similarity=0.417 Sum_probs=88.7
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCC-CCCCCccc------
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIP-PAPPKGLL------ 120 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LP-pLPpK~l~------ 120 (437)
+.|+||++.. .++|++|.|+| ..|.|.||||||.+||+.|++.|| ..+| +||+|.++
T Consensus 6 ~~v~I~~~~~------~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~ 69 (117)
T 1kmd_A 6 LRIKVDDVKI------NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQ 69 (117)
T ss_dssp CCCEEEEEEE------CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTC
T ss_pred EEEEECCcee------cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccc
Confidence 5688999886 35799999998 389999999999999999999998 6789 99999865
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCc---CCCHHHHhccCcch
Q 013768 121 -RMKSRALLEERRCSLEEWMTKLLSDIDL---SRSVSVASFLELEA 162 (437)
Q Consensus 121 -r~~d~efLEERR~aLE~YLq~LLs~P~L---~~S~~V~eFLele~ 162 (437)
++++++|||+||++||.||+.|++||.+ ++|+.|++||+.+.
T Consensus 70 ~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 70 RRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp CCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 5678999999999999999999999964 78999999999875
No 9
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.88 E-value=7.5e-23 Score=179.17 Aligned_cols=100 Identities=24% Similarity=0.397 Sum_probs=90.1
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
.+|+||++..+.+ +.+.|++|.|+|... ...|.|.||||||.+||++|++.||...+|+||+|+++++++++|
T Consensus 6 i~VsIp~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ 78 (134)
T 2v14_A 6 IKISIPRYVLCGQ--GKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERV 78 (134)
T ss_dssp EEEEEEEEEEESS--TTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHH
T ss_pred EEEEECcEEEEec--CCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHH
Confidence 6899999998654 467899999999543 379999999999999999999999988899999999998889999
Q ss_pred HHHHHHHHHHHHHHHhcccC-cCCCHHH
Q 013768 128 LEERRCSLEEWMTKLLSDID-LSRSVSV 154 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~-L~~S~~V 154 (437)
||+||++||.||+.|+++|. +++|+.+
T Consensus 79 ie~Rr~~Le~yL~~ll~~~~~l~~sp~~ 106 (134)
T 2v14_A 79 IAERRSHLEKYLRDFFSVMLQSATSPLH 106 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhChHhhcCCHHH
Confidence 99999999999999999997 8888753
No 10
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=176.73 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=88.6
Q ss_pred EEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 013768 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (437)
Q Consensus 47 Sy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~e 126 (437)
+..|+||++...... .+++|++|.|+|... ...|.|.||||||.+||++|++.++ +|+||+|+++ +.+++
T Consensus 22 ~~~V~Ip~~~~~~~~-~~k~y~vY~I~v~~~-----~~~w~V~RRYsdF~~L~~~L~~~~~---~p~lP~K~~~-~~~~~ 91 (129)
T 4az9_A 22 SMEVYIPSFRYEESD-LERGYTVFKIEVLMN-----GRKHFVEKRYSEFHALHKKLKKCIK---TPEIPSKHVR-NWVPK 91 (129)
T ss_dssp CCEEEEEEEEEECCT-TSCCEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHTTTSC---CCCCCCSCCS-CCCHH
T ss_pred eeEEEECcEEEEecC-CCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHhCC---CCCCCccccc-CCCHH
Confidence 368999999875443 457899999999542 3689999999999999999999886 6888988764 56799
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
|||+||++||.||+.|+.+|.+. +..|++||+++..
T Consensus 92 ~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~~ 127 (129)
T 4az9_A 92 VLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRHL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCCC
Confidence 99999999999999999999875 7899999998754
No 11
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.87 E-value=3.5e-22 Score=175.25 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=95.2
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCC
Q 013768 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPP 116 (437)
Q Consensus 45 gwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--------~~LPpLPp 116 (437)
+..+.|+|+++.... +...|++|.|.|.... ...|.|+||||||.+||++|++.||. +.+|+||+
T Consensus 18 ~~~i~v~I~~~e~~~---~~~~~~vY~I~v~~~~----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~ 90 (143)
T 1h6h_A 18 DVAISANIADIEEKR---GFTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPA 90 (143)
T ss_dssp TCEEEEEEEEEEEEC---SSSCEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCC
T ss_pred CCeEEEEEcCccccC---CCCCeEEEEEEEEEcC----CCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCC
Confidence 456889999986422 2347999999996432 37999999999999999999999993 36899999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhcccC-cCCCHHHHhccCcchh
Q 013768 117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEAA 163 (437)
Q Consensus 117 K~l~r~~d~efLEERR~aLE~YLq~LLs~P~-L~~S~~V~eFLele~~ 163 (437)
|+++++ +++|+|+||++||.||+.|+.+|. +++|+.|++||+....
T Consensus 91 K~~~~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~ 137 (143)
T 1h6h_A 91 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 137 (143)
T ss_dssp CCCSSC-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred CcccCc-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCcc
Confidence 998876 789999999999999999999997 9999999999998653
No 12
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.85 E-value=4.2e-21 Score=165.23 Aligned_cols=112 Identities=19% Similarity=0.301 Sum_probs=93.2
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC-
Q 013768 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK- 123 (437)
Q Consensus 45 gwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~- 123 (437)
|....|.|.++..... +.+.| +|.|+|..... ...|.|+||||||.+||++|++.||...+|+||+|++++++
T Consensus 3 ~~i~~v~V~~~ek~~~--~~k~y-~Y~I~v~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~ 76 (121)
T 2ar5_A 3 GRIKEVSVFTYHKKYN--PDKHY-IYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTH 76 (121)
T ss_dssp SSEEEEEEEEEECCCS--SSSCC-EEEEEEEETTC---SSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSS
T ss_pred CeEEEEEECcEEEEec--CCCcE-EEEEEEEECCC---ceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccC
Confidence 4456788888876432 23444 59999965432 25899999999999999999999999899999999877754
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc-cCcCCCHHHHhccCcch
Q 013768 124 SRALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELEA 162 (437)
Q Consensus 124 d~efLEERR~aLE~YLq~LLs~-P~L~~S~~V~eFLele~ 162 (437)
+++|+|+||.+||.||+.|++. |.+++|+.|+.||+...
T Consensus 77 ~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 77 IKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 5799999999999999999985 79999999999998753
No 13
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=169.50 Aligned_cols=92 Identities=26% Similarity=0.346 Sum_probs=81.9
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~efLEERR~aLE~YLq~L 142 (437)
+.++|++|.|+|... ...|.|.||||||.+||++|++.|+ +|+||+|.++ +++++|||+||++||.||+.|
T Consensus 28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~-~~~~~~ie~Rr~~Le~yL~~l 98 (128)
T 2ett_A 28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP-NWRTRGLEQRRQGLEAYIQGI 98 (128)
T ss_dssp SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC-CSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999653 3689999999999999999999986 8999999976 456899999999999999999
Q ss_pred hcccCcCCCHHHHhccCcchhh
Q 013768 143 LSDIDLSRSVSVASFLELEAAA 164 (437)
Q Consensus 143 Ls~P~L~~S~~V~eFLele~~~ 164 (437)
+.+|.+. ++.|++||+.+...
T Consensus 99 l~~p~~~-s~~l~~FL~~~~~~ 119 (128)
T 2ett_A 99 LYLNQEV-PKELLEFLRLRHFP 119 (128)
T ss_dssp HHHSSSS-CHHHHHHHTCTTCC
T ss_pred HhCchhc-CHHHHHhcCCccCC
Confidence 9999887 79999999988754
No 14
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.84 E-value=8.3e-22 Score=199.13 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=82.2
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~d~ef 127 (437)
|.|.|.......+..+.++||+|.|.+. . ..|.|.||||||.+||+.|.+.||.+.+||||+|.++++++++|
T Consensus 42 ~~i~V~dp~k~~~~~g~~~y~~Y~I~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~g~~~~~f 114 (386)
T 4akv_A 42 FACSVEDPTKQTKFKGIKSYISYKLTPT--H-----AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATGRFEEDF 114 (386)
T ss_dssp CCEEEECC------------CCEEEEET--T-----SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC------CCT
T ss_pred eEEEEcCceEecCCCCCcCeEEEEEEEE--e-----CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCcccCCCCHHH
Confidence 4555555554332235578999999983 2 47999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcch
Q 013768 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (437)
Q Consensus 128 LEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~ 162 (437)
||+||++||.||++|+.||.+++|+.|+.||+.+.
T Consensus 115 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 115 IEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp TTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC
Confidence 99999999999999999999999999999999864
No 15
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.83 E-value=7.6e-21 Score=172.77 Aligned_cols=114 Identities=25% Similarity=0.284 Sum_probs=96.0
Q ss_pred CCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC
Q 013768 44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR 121 (437)
Q Consensus 44 tgwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk--~fp~~~LPpLPpK~l~r 121 (437)
++-.+.|.|...... + .||.|.|.+.+..|.+....|.|.||||||.|||+.|.+ .||.+.+||+|+|.+++
T Consensus 8 ~~~~l~i~V~dp~~~-----~-~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~ 81 (161)
T 3hpc_X 8 VDPSLQIDIPDALSE-----R-DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFD 81 (161)
T ss_dssp CSCSEEEEEEEEEEE-----T-TEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCH
T ss_pred CCCeEEEEECCCeEe-----c-CCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCccccc
Confidence 344477777777653 2 299999999888777778899999999999999999999 89999999999998652
Q ss_pred ---------------C-----------CCHHHHHHHH---HHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 122 ---------------M-----------KSRALLEERR---CSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 122 ---------------~-----------~d~efLEERR---~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
+ ++++|||+|| ++||.||++|+.||.+++++.|+.||+.+..
T Consensus 82 ~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 82 GPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp HHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSC
T ss_pred chhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCcc
Confidence 1 2468999754 4699999999999999999999999998854
No 16
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.83 E-value=1.3e-21 Score=195.78 Aligned_cols=109 Identities=21% Similarity=0.288 Sum_probs=84.3
Q ss_pred EEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHH
Q 013768 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRA 126 (437)
Q Consensus 48 y~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~-~~LPpLPpK~l~r~~d~e 126 (437)
+.|.|.......+..+.++||+|.|.+. . ..|.|.||||||.+||+.|.+.||. +.+||||+|.++++++++
T Consensus 21 ~~i~V~dp~k~~~~~g~~~y~~Y~I~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g~~~~~ 93 (366)
T 3dyt_A 21 FDCVVADPRKGSKMYGLKSYIEYQLTPT--N-----TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEE 93 (366)
T ss_dssp CCEEEECGGGSSSCCCCCSSCEEEEEET--T-----CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-----------
T ss_pred eEEEEcCceeecCCCCCcCeEEEEEEEe--c-----CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcccCCCCHH
Confidence 4566655554332235578999999983 2 4899999999999999999999998 899999999988888899
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCCHHHHhccCcchh
Q 013768 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 127 fLEERR~aLE~YLq~LLs~P~L~~S~~V~eFLele~~ 163 (437)
|||+||++||.||++|+.||.+++|+.|+.||+.+..
T Consensus 94 fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~ 130 (366)
T 3dyt_A 94 FIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 130 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCch
Confidence 9999999999999999999999999999999998643
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.83 E-value=2.8e-20 Score=163.52 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=92.0
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---------CCCCCC
Q 013768 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---------NIPPAP 115 (437)
Q Consensus 45 gwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~---------~LPpLP 115 (437)
+....|.|+++..... .+.|++|.|.|.... ...|.|+||||||.+||++|++.||.. .+|+||
T Consensus 4 ~~i~~v~V~~~ek~~~---~~~~~~Y~I~V~~~~----~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP 76 (141)
T 1kq6_A 4 TFIRHIALLGFEKRFV---PSQHYVYMFLVKWQD----LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLP 76 (141)
T ss_dssp SCEEEEEEEEEEEECS---SSCEEEEEEEEEETT----CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCC
T ss_pred ceEEEEEEccEEEecC---CCCeEEEEEEEEEcC----CCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCC
Confidence 4445788888875432 345778999996543 268999999999999999999999964 689999
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHhccc-CcCCCHHHHhccCcchh
Q 013768 116 PKGLLRMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLELEAA 163 (437)
Q Consensus 116 pK~l~r~~d~efLEERR~aLE~YLq~LLs~P-~L~~S~~V~eFLele~~ 163 (437)
+|.++++ .+|+|+||.+||.||+.|+.+| .+++|+.|++||+....
T Consensus 77 ~K~~~~~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~ 123 (141)
T 1kq6_A 77 APKWFDG--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD 123 (141)
T ss_dssp CCCCCCS--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred CccccCC--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcc
Confidence 9988764 7999999999999999999976 58999999999988654
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.82 E-value=7.7e-21 Score=167.11 Aligned_cols=112 Identities=20% Similarity=0.313 Sum_probs=87.9
Q ss_pred CCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC
Q 013768 44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK 123 (437)
Q Consensus 44 tgwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r~~ 123 (437)
.+....|.|+++..... .+.|++|.|+|..... ...|.|.||||||.+||++|++.||...+|+||+|++++++
T Consensus 17 ~~~i~~v~I~~~ek~~~---~~k~~~Y~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~ 90 (140)
T 2iwl_X 17 DGRIKEVSVFTYHKKYN---PDKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT 90 (140)
T ss_dssp HCCEEEEEEEEEEECCS---SSSCEEEEEEEEETTC---SSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-------
T ss_pred CCeeEEEEECcEEEEec---CCCeEEEEEEEEECCC---ceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCcc
Confidence 35556889999886432 2346679999965432 25899999999999999999999999899999999877654
Q ss_pred -CHHHHHHHHHHHHHHHHHHhc-ccCcCCCHHHHhccCcc
Q 013768 124 -SRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELE 161 (437)
Q Consensus 124 -d~efLEERR~aLE~YLq~LLs-~P~L~~S~~V~eFLele 161 (437)
+.+|+|+||.+||.||+.|++ ++.+++|+.|++||...
T Consensus 91 ~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 91 HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 578999999999999999998 67999999999999864
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.78 E-value=6.9e-19 Score=158.69 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=88.9
Q ss_pred cEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------------CCC
Q 013768 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------------KNI 111 (437)
Q Consensus 46 wSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~--------------~~L 111 (437)
+-..|+|+++... . .+.+|.|.|.... ...|.|+||||||.+||.+|++.||. +.+
T Consensus 17 ~~~~~sI~~~~~~-----~-~~y~Y~I~V~~~d----~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~l 86 (156)
T 2v6v_A 17 LLVKASVESFGLE-----D-EKYWFLVCCELSN----GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIM 86 (156)
T ss_dssp CEEEEEEEEEEEE-----T-TEEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCS
T ss_pred cceEEEEeeEEEE-----C-CEEEEEEEEEEcC----CCEEEEEEEhHHHHHHHHHHHHHcchhhccccccccccccccc
Confidence 4467999999863 2 3556999996543 36999999999999999999999984 458
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc-ccCcCCCHHHHhccCcchh
Q 013768 112 PPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELEAA 163 (437)
Q Consensus 112 PpLPpK~l~r~~d~efLEERR~aLE~YLq~LLs-~P~L~~S~~V~eFLele~~ 163 (437)
|+||+|.++. +++|+|+||.+||.||+.|+. .+.+++|+.|+.||+....
T Consensus 87 P~LP~K~~~~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~ 137 (156)
T 2v6v_A 87 PYIPGPVPYV--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNN 137 (156)
T ss_dssp CCCCCCCSSC--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSS
T ss_pred CCCCCCcccC--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCc
Confidence 9999998763 579999999999999999998 5569999999999988753
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=154.20 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=83.3
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCC-CHHHHHHHH
Q 013768 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMK-SRALLEERR 132 (437)
Q Consensus 63 ~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~---------~~LPpLPpK~l~r~~-d~efLEERR 132 (437)
.++.|++|.|.|.... ...|.|+|||+||.+||++|++.||. +.+|.||+|.+++++ +++++|+||
T Consensus 22 ~~~~y~~Y~I~V~~~d----~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~~~~~~e~R~ 97 (149)
T 2l73_A 22 QIKRLQTFAFSVRWSD----GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARL 97 (149)
T ss_dssp CCSSSCEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCCHHHHHHHHH
T ss_pred CCCceEEEEEEEEEeC----CCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccccchHHHHHHH
Confidence 3668999999996543 36899999999999999999999982 358999999877643 589999999
Q ss_pred HHHHHHHHHHhccc-CcCCCHHHHhccCcch
Q 013768 133 CSLEEWMTKLLSDI-DLSRSVSVASFLELEA 162 (437)
Q Consensus 133 ~aLE~YLq~LLs~P-~L~~S~~V~eFLele~ 162 (437)
.+||.||+.|++.| .+++|+.|++||+...
T Consensus 98 ~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 128 (149)
T 2l73_A 98 QLLETYSRRLLATAERVARSPTITGFFAPQP 128 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHSHHHHHHHSCCG
T ss_pred HHHHHHHHHHHhCCccccCCHHHHHHhCCCc
Confidence 99999999999866 5999999999998865
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.72 E-value=5.7e-18 Score=149.21 Aligned_cols=106 Identities=23% Similarity=0.253 Sum_probs=88.4
Q ss_pred CCCCcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 013768 42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121 (437)
Q Consensus 42 ~rtgwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~~LPpLPpK~l~r 121 (437)
..++..-.|+|.++.. . ....|.|+|.... ...|.|.|||+||..||++|++.||...+|+||+|++++
T Consensus 20 ~~~~~i~~~~v~~~~k------~-~~~~Yvi~V~~sd----~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~ 88 (127)
T 2wwe_A 20 FQSMSIERATILGFSK------K-SSNLYLIQVTHSN----NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP 88 (127)
T ss_dssp SCSSSEEEEEEEEEET------T-EEEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH
T ss_pred ecCCcEEEEEEEEEEe------c-ccEEEEEEEEEeC----CCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC
Confidence 4456666888888863 1 4567999996554 379999999999999999999999999999999999776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc-ccCcCCCHHHHhccCc
Q 013768 122 MKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160 (437)
Q Consensus 122 ~~d~efLEERR~aLE~YLq~LLs-~P~L~~S~~V~eFLel 160 (437)
... .-++ ||++||+||+.|++ +++|++|+.|.+||..
T Consensus 89 ~t~-~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 89 FTN-SDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHH-CHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred cCH-HHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 532 3344 99999999999999 8999999999999964
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=150.15 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=92.9
Q ss_pred CcEEEEEeCCeEeccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC--------CCCCCCC
Q 013768 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK--------NIPPAPP 116 (437)
Q Consensus 45 gwSy~VsIPSw~~v~~s~~sk~yVvY~IqV~vqspeg~~~~w~V~RRYSDF~~Lh~~Lkk~fp~~--------~LPpLPp 116 (437)
+....|+|+++..... ...|++|.|+|.... ...|.|+|||+||..||++|++.||.. .+|.||+
T Consensus 21 ~~~~~v~I~~~~~~~~---~~~~~~Y~i~v~~~~----~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~ 93 (341)
T 2dyb_A 21 DVAISANIADIEEKRG---FTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPA 93 (341)
T ss_dssp TSEEEEEEEEEEEEES---SSEEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCC
T ss_pred CCcEEEEECCeEEecC---CCcEEEEEEEEEEcC----CcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCC
Confidence 4557899999975422 235889999996432 368999999999999999999999943 4899999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhcccC-cCCCHHHHhccCcchh
Q 013768 117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEAA 163 (437)
Q Consensus 117 K~l~r~~d~efLEERR~aLE~YLq~LLs~P~-L~~S~~V~eFLele~~ 163 (437)
|.++++ ..+++|+||+.|+.||+.|+..|. +++|+.|+.||.....
T Consensus 94 k~~~~~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~ 140 (341)
T 2dyb_A 94 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 140 (341)
T ss_dssp CCCCSC-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHH
T ss_pred ccccCc-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Confidence 988866 468999999999999999999886 9999999999987653
No 23
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=52.31 E-value=6 Score=25.96 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHhhhhhhHhhhh
Q 013768 420 ITRLNQEMTVKDYL 433 (437)
Q Consensus 420 i~rlnqe~avk~~l 433 (437)
-|||-||+|.-+|=
T Consensus 9 narlkqeiaaleye 22 (28)
T 3ra3_B 9 NARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 47999999988873
No 24
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=40.08 E-value=20 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHhhcccHHHHHHHhhhhhhHhhhhh
Q 013768 405 MERRLVTAKTDMEDLITRLNQEMTVKDYLM 434 (437)
Q Consensus 405 ~~~rl~taktdmedli~rlnqe~avk~~l~ 434 (437)
+.+=.....-|.+.|++.||+-++-|+.|.
T Consensus 41 LeeA~~~hgiD~d~ll~eLn~~i~~~~~~~ 70 (76)
T 2k53_A 41 IEDACAVHGIDADKLVKELNEYFEKKEVLE 70 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcchHh
Confidence 334444556799999999999999998874
No 25
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.52 E-value=18 Score=30.46 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHHHHhhcccHHHHHHHhhhhhhHhhhhhc
Q 013768 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMT 435 (437)
Q Consensus 396 ~k~~r~l~t~~~rl~taktdmedli~rlnqe~avk~~l~t 435 (437)
+-|.-+..-|.+-...++.|||+=|++|++||++=|-+..
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666778999999999999999998776543
No 26
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.73 E-value=72 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.0
Q ss_pred cchhhHhHHHHHHHHHHHhhcccHHHHHH
Q 013768 393 DQRHKLSRVLLTMERRLVTAKTDMEDLIT 421 (437)
Q Consensus 393 d~r~k~~r~l~t~~~rl~taktdmedli~ 421 (437)
.+|..++++|..+..-|..+|.||+....
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~ 33 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLD 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999986543
No 27
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=23.86 E-value=42 Score=21.13 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 013768 130 ERRCSLEEWMTK 141 (437)
Q Consensus 130 ERR~aLE~YLq~ 141 (437)
.|+..|+.||++
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 477778888775
No 28
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=22.41 E-value=83 Score=26.72 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=17.9
Q ss_pred hhcccHHHHHHHhhhhhhHh
Q 013768 411 TAKTDMEDLITRLNQEMTVK 430 (437)
Q Consensus 411 taktdmedli~rlnqe~avk 430 (437)
..+.|++||..+.|++||.+
T Consensus 52 ~~~~dl~~ilT~Vn~~Va~~ 71 (118)
T 2xzd_B 52 ADKLEFMHILTRVNRKVATE 71 (118)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHH
Confidence 45689999999999999987
No 29
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=22.38 E-value=81 Score=25.44 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=17.4
Q ss_pred hcccHHHHHHHhhhhhhHh
Q 013768 412 AKTDMEDLITRLNQEMTVK 430 (437)
Q Consensus 412 aktdmedli~rlnqe~avk 430 (437)
.+.|++||..+.|++||.+
T Consensus 48 ~~~dl~~ilt~Vn~~V~~~ 66 (97)
T 2ql9_B 48 KDLEIMQILTRVNDRVARH 66 (97)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 5689999999999999976
Done!