BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013769
         (437 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
           Complexed With Adp And Mg2+
 pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
           Complexed With Adp And Mg2+
 pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
           Nucleotide Free Form
 pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
           Nucleotide Free Form
          Length = 610

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 337 SGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGA---GQL 393
           +G+S T  G    ++V Q   +L  KP    F+   LA+  S+ V++ GG AG     Q 
Sbjct: 298 TGESGTNIGGML-EHVRQTMAELTNKPSSEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQA 356

Query: 394 IIIASMILSFELPFALV 410
           + IASM+ S  L  A++
Sbjct: 357 VGIASMVKSDRLQMAMI 373


>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer
 pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer
 pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
          Length = 365

 Score = 32.0 bits (71), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 12/116 (10%)

Query: 250 SRKIPRSVRSIKEACRFYMI-----ESGFALAVAFLINV--SVISVSGAVCSSSNI-NPE 301
            R+IP +  SIK  CRF  +     ++G    V F  NV  + IS++G V     +  P 
Sbjct: 4   EREIP-AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKP- 61

Query: 302 DQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 357
             AS + +    A  ++ +VL  ++  +FA    +SG++ T+ G   G  V QG +
Sbjct: 62  -NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI-GDSVKQGII 115


>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
           Clostridium Acetobutylicum
          Length = 385

 Score = 31.6 bits (70), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 23  NAPLIKNEDADQIVVPDKTSW--KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYEL 80
           N  + KN+  D I++  K  W  KN    I   F  SI   DP N    L+SG + KYE 
Sbjct: 52  NEIIAKNKSIDDILIK-KNDWYEKNNIKVITSEFATSI---DPNNKLVTLKSGEKIKYEK 107

Query: 81  LWI 83
           L I
Sbjct: 108 LII 110


>pdb|2WFO|A Chain A, Crystal Structure Of Machupo Virus Envelope Glycoprotein
           Gp1
          Length = 182

 Score = 28.1 bits (61), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 14/69 (20%)

Query: 266 FYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSW 325
           FY ++ G   A  FLI VS +SV       S   PED  +C    LNK+         SW
Sbjct: 12  FYYMKGG---ANIFLIRVSDVSVLMKEYDVSVYEPEDLGNC----LNKSD-------SSW 57

Query: 326 SSKLFAIAL 334
           +   F+IAL
Sbjct: 58  AIHWFSIAL 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,935,106
Number of Sequences: 62578
Number of extensions: 462479
Number of successful extensions: 1306
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 11
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)