Query 013769
Match_columns 437
No_of_seqs 145 out of 1217
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00701 manganese transport p 100.0 8.8E-82 1.9E-86 651.3 47.0 411 18-437 5-419 (439)
2 KOG1291 Mn2+ and Fe2+ transpor 100.0 1.5E-78 3.2E-83 604.9 27.6 400 37-436 19-428 (503)
3 TIGR01197 nramp NRAMP (natural 100.0 1E-74 2.3E-79 589.0 44.5 373 44-422 1-390 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 2.2E-72 4.9E-77 571.5 43.6 392 34-437 4-395 (416)
5 PF01566 Nramp: Natural resist 100.0 2.4E-68 5.2E-73 540.7 38.0 356 66-429 1-358 (358)
6 PF03222 Trp_Tyr_perm: Tryptop 98.9 3.4E-06 7.3E-11 87.1 32.5 158 48-208 4-169 (394)
7 TIGR00813 sss transporter, SSS 98.9 1E-05 2.2E-10 83.7 35.1 119 54-175 12-135 (407)
8 TIGR02119 panF sodium/pantothe 98.9 2.4E-05 5.1E-10 82.6 37.5 120 55-174 50-175 (471)
9 PRK09442 panF sodium/panthothe 98.7 0.00028 6.1E-09 74.8 39.7 118 57-174 53-176 (483)
10 PF00474 SSF: Sodium:solute sy 98.7 1.6E-05 3.5E-10 82.1 29.4 113 56-168 17-132 (406)
11 TIGR02121 Na_Pro_sym sodium/pr 98.7 0.0002 4.4E-09 75.9 37.3 119 57-175 48-175 (487)
12 PRK15132 tyrosine transporter 98.7 5.3E-05 1.1E-09 78.3 31.5 158 48-208 4-169 (403)
13 PRK15419 proline:sodium sympor 98.7 0.0002 4.3E-09 76.3 35.6 120 56-175 51-179 (502)
14 PRK13629 threonine/serine tran 98.6 0.0003 6.5E-09 73.1 34.5 151 54-209 26-188 (443)
15 TIGR02711 symport_actP cation/ 98.6 0.0005 1.1E-08 74.1 37.2 122 53-175 75-199 (549)
16 PRK09395 actP acetate permease 98.6 0.00054 1.2E-08 73.9 36.9 122 53-175 77-201 (551)
17 PRK12488 acetate permease; Pro 98.6 0.00081 1.7E-08 72.5 37.8 122 53-175 75-199 (549)
18 PRK09664 tryptophan permease T 98.5 0.00024 5.2E-09 73.5 30.5 153 48-210 10-179 (415)
19 PRK10483 tryptophan permease; 98.5 0.00015 3.2E-09 75.1 28.7 156 46-210 10-180 (414)
20 COG0591 PutP Na+/proline sympo 98.5 0.0015 3.3E-08 69.5 36.8 126 48-174 38-173 (493)
21 TIGR00814 stp serine transport 98.5 0.00043 9.2E-09 71.6 31.2 146 60-207 16-170 (397)
22 PRK10249 phenylalanine transpo 98.5 0.0012 2.7E-08 69.4 35.3 160 23-186 3-165 (458)
23 PRK11375 allantoin permease; P 98.4 0.0022 4.7E-08 68.1 35.9 51 78-128 60-110 (484)
24 PF01235 Na_Ala_symp: Sodium:a 98.4 0.00027 5.8E-09 73.0 27.7 273 58-357 30-338 (416)
25 TIGR00837 araaP aromatic amino 98.4 0.00073 1.6E-08 69.1 30.4 72 312-384 253-325 (381)
26 PRK11387 S-methylmethionine tr 98.4 0.0041 8.9E-08 65.6 36.1 41 313-353 276-316 (471)
27 TIGR03648 Na_symport_lg probab 98.3 0.0095 2.1E-07 64.3 38.6 120 53-175 40-164 (552)
28 TIGR00905 2A0302 transporter, 98.2 0.0091 2E-07 63.1 34.9 40 314-353 270-309 (473)
29 TIGR00835 agcS amino acid carr 98.2 0.0068 1.5E-07 63.0 32.1 283 56-360 56-368 (425)
30 TIGR00800 ncs1 NCS1 nucleoside 98.1 0.006 1.3E-07 63.9 31.2 80 55-135 22-104 (442)
31 PRK10484 putative transporter; 98.1 0.02 4.2E-07 61.5 36.9 71 54-124 47-118 (523)
32 PRK11049 D-alanine/D-serine/gl 98.1 0.02 4.3E-07 60.5 36.5 40 314-353 282-321 (469)
33 COG3949 Uncharacterized membra 98.1 0.0074 1.6E-07 60.0 28.5 146 44-196 7-153 (349)
34 TIGR00796 livcs branched-chain 98.1 0.02 4.3E-07 58.9 35.1 104 311-423 254-357 (378)
35 COG1457 CodB Purine-cytosine p 98.1 0.0078 1.7E-07 62.7 29.0 120 79-201 53-172 (442)
36 TIGR03810 arg_ornith_anti argi 98.0 0.033 7.1E-07 58.8 34.0 40 314-353 266-305 (468)
37 COG0814 SdaC Amino acid permea 97.9 0.019 4.1E-07 59.8 29.2 156 50-209 12-178 (415)
38 PRK11021 putative transporter; 97.9 0.043 9.2E-07 56.8 37.3 40 314-353 248-287 (410)
39 TIGR01773 GABAperm gamma-amino 97.9 0.048 1E-06 57.2 35.9 138 47-188 19-158 (452)
40 PRK11357 frlA putative fructos 97.9 0.049 1.1E-06 57.0 32.4 38 85-124 54-91 (445)
41 TIGR02358 thia_cytX probable h 97.9 0.047 1E-06 56.3 34.1 57 78-134 29-85 (386)
42 COG0733 Na+-dependent transpor 97.9 0.034 7.4E-07 57.6 29.4 146 179-344 165-322 (439)
43 TIGR00909 2A0306 amino acid tr 97.8 0.053 1.1E-06 56.3 33.6 43 314-356 266-308 (429)
44 PRK15049 L-asparagine permease 97.8 0.067 1.5E-06 57.0 38.2 144 49-197 37-185 (499)
45 PF02133 Transp_cyt_pur: Perme 97.8 0.0063 1.4E-07 63.6 23.0 80 54-134 16-98 (440)
46 TIGR00908 2A0305 ethanolamine 97.7 0.08 1.7E-06 55.3 37.0 101 86-188 52-153 (442)
47 PRK10238 aromatic amino acid t 97.7 0.09 2E-06 55.3 37.8 137 48-188 20-158 (456)
48 PRK11017 codB cytosine permeas 97.7 0.084 1.8E-06 54.8 31.0 108 79-187 43-151 (404)
49 COG4147 DhlC Predicted symport 97.7 0.064 1.4E-06 55.8 28.2 72 104-175 101-173 (529)
50 TIGR00907 2A0304 amino acid pe 97.5 0.11 2.4E-06 54.8 28.7 40 314-353 291-331 (482)
51 PF05525 Branch_AA_trans: Bran 97.5 0.18 3.9E-06 52.6 32.3 328 53-414 9-354 (427)
52 PRK10580 proY putative proline 97.5 0.21 4.5E-06 52.5 36.0 68 50-125 19-91 (457)
53 PF13520 AA_permease_2: Amino 97.4 0.21 4.6E-06 51.6 30.8 39 315-353 261-299 (426)
54 PRK10197 gamma-aminobutyrate t 97.4 0.25 5.4E-06 51.8 35.6 38 316-353 255-292 (446)
55 PRK10655 potE putrescine trans 97.2 0.34 7.4E-06 50.5 32.5 41 313-353 259-299 (438)
56 TIGR00913 2A0310 amino acid pe 97.2 0.37 8.1E-06 50.8 35.1 39 86-125 48-86 (478)
57 PRK10746 putative transport pr 97.2 0.45 9.8E-06 50.2 36.4 98 88-187 57-155 (461)
58 COG1115 AlsT Na+/alanine sympo 97.1 0.43 9.3E-06 49.6 32.6 277 57-359 73-384 (452)
59 TIGR00906 2A0303 cationic amin 97.1 0.61 1.3E-05 50.5 31.6 39 315-353 302-340 (557)
60 PRK10644 arginine:agmatin anti 97.1 0.51 1.1E-05 49.3 36.5 38 85-124 51-88 (445)
61 TIGR00911 2A0308 L-type amino 96.9 0.85 1.8E-05 48.5 35.3 38 86-125 89-126 (501)
62 COG4145 PanF Na+/panthothenate 96.8 0.75 1.6E-05 46.8 26.5 119 53-177 47-177 (473)
63 TIGR00910 2A0307_GadC glutamat 96.7 1.2 2.7E-05 47.5 33.5 50 74-124 29-83 (507)
64 PRK10435 cadB lysine/cadaverin 96.6 1.1 2.5E-05 46.7 33.5 38 85-125 48-85 (435)
65 PRK15433 branched-chain amino 96.4 1.6 3.4E-05 45.7 31.0 75 52-127 13-87 (439)
66 COG1113 AnsP Gamma-aminobutyra 96.3 1.8 4E-05 45.2 30.6 134 60-197 28-168 (462)
67 PRK10836 lysine transporter; P 96.0 2.7 5.8E-05 44.6 34.7 39 315-353 285-323 (489)
68 TIGR00930 2a30 K-Cl cotranspor 96.0 4.4 9.5E-05 46.8 35.7 29 326-354 386-414 (953)
69 TIGR03428 ureacarb_perm permea 95.5 4 8.8E-05 43.1 34.9 46 78-125 51-96 (475)
70 TIGR00912 2A0309 spore germina 95.5 3.3 7.2E-05 41.8 34.9 101 85-195 45-151 (359)
71 TIGR03813 put_Glu_GABA_T putat 95.4 4.4 9.6E-05 42.7 34.4 67 52-124 8-79 (474)
72 COG0531 PotE Amino acid transp 95.3 4.3 9.2E-05 42.1 36.3 41 313-353 273-313 (466)
73 PF00324 AA_permease: Amino ac 94.3 0.14 3E-06 54.1 8.0 39 315-353 277-315 (478)
74 COG0833 LysP Amino acid transp 92.9 15 0.00033 39.3 24.4 141 50-201 60-205 (541)
75 PF02554 CstA: Carbon starvati 92.9 4.8 0.0001 41.1 15.7 57 71-128 75-135 (376)
76 KOG1289 Amino acid transporter 92.2 19 0.00041 38.6 23.0 89 224-328 251-341 (550)
77 COG1114 BrnQ Branched-chain am 91.1 21 0.00046 37.1 29.2 73 52-125 10-82 (431)
78 COG1953 FUI1 Cytosine/uracil/t 90.7 26 0.00056 37.3 31.2 135 63-198 54-213 (497)
79 PF00209 SNF: Sodium:neurotran 87.9 18 0.00039 38.8 15.7 58 58-115 16-75 (523)
80 PF03845 Spore_permease: Spore 87.2 33 0.00072 34.0 32.0 128 82-221 36-172 (320)
81 KOG1286 Amino acid transporter 86.5 53 0.0012 35.7 18.7 41 316-356 306-350 (554)
82 KOG2349 Na+:iodide/myo-inosito 86.1 14 0.00031 40.0 13.4 114 56-174 56-175 (585)
83 PRK15015 carbon starvation pro 85.0 34 0.00073 37.7 15.5 90 23-125 68-163 (701)
84 PRK15238 inner membrane transp 80.0 86 0.0019 33.2 37.3 74 47-124 9-87 (496)
85 COG1966 CstA Carbon starvation 78.2 1.1E+02 0.0023 33.2 29.2 69 44-125 60-132 (575)
86 PF02028 BCCT: BCCT family tra 77.4 1.1E+02 0.0023 32.8 23.0 80 329-415 393-475 (485)
87 PRK09509 fieF ferrous iron eff 72.2 1E+02 0.0023 30.3 17.7 89 176-274 73-161 (299)
88 PRK15433 branched-chain amino 66.0 1.2E+02 0.0025 32.1 13.0 84 85-168 233-326 (439)
89 PF05525 Branch_AA_trans: Bran 64.7 1.9E+02 0.0041 30.4 14.3 102 85-192 229-341 (427)
90 COG1292 BetT Choline-glycine b 64.6 2.1E+02 0.0045 30.9 22.4 45 145-189 216-266 (537)
91 PRK04125 murein hydrolase regu 59.7 1.1E+02 0.0024 27.0 9.8 51 150-201 28-78 (141)
92 PRK09928 choline transport pro 59.2 3E+02 0.0064 30.8 26.7 42 336-377 417-464 (679)
93 COG0053 MMT1 Predicted Co/Zn/C 58.9 1.3E+02 0.0028 30.0 11.5 92 175-276 74-165 (304)
94 TIGR01297 CDF cation diffusion 56.5 1.9E+02 0.004 27.7 14.2 17 176-192 52-68 (268)
95 COG3949 Uncharacterized membra 55.9 1.3E+02 0.0028 30.6 10.6 87 316-416 70-157 (349)
96 KOG1303 Amino acid transporter 54.4 2.9E+02 0.0062 29.2 26.5 175 64-243 54-248 (437)
97 PRK03557 zinc transporter ZitB 52.2 2.5E+02 0.0055 27.9 17.8 17 176-192 81-97 (312)
98 PRK09950 putative transporter; 50.3 3.6E+02 0.0077 29.1 23.2 12 145-156 213-224 (506)
99 PF01545 Cation_efflux: Cation 44.0 94 0.002 30.0 7.8 65 176-246 61-125 (284)
100 PF11654 DUF2665: Protein of u 38.9 64 0.0014 23.0 4.0 38 80-120 9-46 (47)
101 COG1230 CzcD Co/Zn/Cd efflux s 38.0 4.2E+02 0.0092 26.4 16.5 60 176-242 84-143 (296)
102 PF13253 DUF4044: Protein of u 37.2 59 0.0013 21.6 3.4 25 178-202 6-30 (35)
103 PF01914 MarC: MarC family int 33.8 76 0.0016 29.7 5.0 54 60-113 121-179 (203)
104 PRK01658 holin-like protein; V 28.5 3.8E+02 0.0082 23.0 9.4 52 149-201 24-75 (122)
105 COG1114 BrnQ Branched-chain am 28.0 7.3E+02 0.016 26.1 14.4 103 81-189 227-340 (431)
No 1
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=8.8e-82 Score=651.35 Aligned_cols=411 Identities=43% Similarity=0.750 Sum_probs=374.6
Q ss_pred CCCCCCCCCccccCCcccccCCcchHHHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013769 18 NRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSL 97 (437)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~ 97 (437)
+|+..+.|+..+.|.+....++++.+|++++.+|||++++++|+|||+++|++++||+|||+|+|++++++++++++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~ 84 (439)
T PRK00701 5 PRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSL 84 (439)
T ss_pred cccccCCCChhhhcccccCCCcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666655556667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcc
Q 013769 98 AANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYG 177 (437)
Q Consensus 98 ~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~ 177 (437)
++|+|++|||++.|.|||||||+++|+.|+..++++++++++|++|+++++|+++|+|.+++++++++.+++++++.+++
T Consensus 85 ~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~~ 164 (439)
T PRK00701 85 SAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRG 164 (439)
T ss_pred HhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998887766666555667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccc---cCCCChHHHHHHHhccchhhHHHHHHHHHHhhccCC
Q 013769 178 VRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP 254 (437)
Q Consensus 178 y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~---~p~~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~ 254 (437)
||++||+++.++.+|.+||+++++.++|||+|+++| ++|+ +|+++....++|++|+|++||++|+||++++||+++
T Consensus 165 y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~ 243 (439)
T PRK00701 165 FRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVG 243 (439)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999 8999 886556788999999999999999999999888655
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCccccccccHHHHHHHHHHhHhHHHHHHHHHH
Q 013769 255 RSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNIN-PEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIA 333 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~-~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~ig 333 (437)
+++++.++++|++|+|+.+|+.+++++|.++++++|+++|++|.+ ++ +..|++++|||.+|++++++|++|
T Consensus 244 ~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~~~--------~~~~~a~~L~p~~G~~a~~lFaiG 315 (439)
T PRK00701 244 RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVA--------DIEDAYLLLSPLLGAAAATLFGIA 315 (439)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcC--------CHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555566778999999999999999999999999999999988754 22 578999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHHHHHHHHHH
Q 013769 334 LLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLL 413 (437)
Q Consensus 334 l~aa~fss~i~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~LP~~~~~ll 413 (437)
+++|+++|++++++++++++|++++++.+++.||..++.+.++|++++.++.+..+|.++++++|++|++.+|++++|++
T Consensus 316 L~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~~ll 395 (439)
T PRK00701 316 LLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALIPLL 395 (439)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888888899887766544346999999999999999999999999
Q ss_pred HHhcCccccCCCCCchhhHHhhcC
Q 013769 414 KFTSSKVKMGMHANSIAFSGKSML 437 (437)
Q Consensus 414 ~l~n~k~img~~rn~~~~~~l~~~ 437 (437)
+++|||++||||||+++.|+++|+
T Consensus 396 ~l~~~~~imG~~~~~~~~~~~~~~ 419 (439)
T PRK00701 396 LFTSDRKLMGELVNPRWVKIIAWI 419 (439)
T ss_pred HHHCCHHhhccchhhHHHHHHHHH
Confidence 999999999999999999999884
No 2
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-78 Score=604.85 Aligned_cols=400 Identities=54% Similarity=0.870 Sum_probs=371.2
Q ss_pred cCCcchHHHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhh
Q 013769 37 VPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNE 116 (437)
Q Consensus 37 ~~~~~~~~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~ 116 (437)
.+++.+|||+++++|||++++++|+||||+.|+.|+||++||+|||++++++++...+|.+++|+|++|||+++|.||++
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 013769 117 YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (437)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f 196 (437)
|+|+.+|.+|+.++++.+++|++|++|+|+++|+|+++|+|.+++++++++++++++.+||.|++|.+..+++..|.+||
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai~F 178 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAISF 178 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHhhccccccccCC--CChHHHHHHHhccchhhHHHHHHHHHHhhccCCCCh-hhHHHHHHHHHHHHHH
Q 013769 197 FAELGYAKPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV-RSIKEACRFYMIESGF 273 (437)
Q Consensus 197 v~~~~~~~p~~~~v~~g~~~P~~p~--~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~~~~-~~~~~~~~~~~~d~~~ 273 (437)
.++...++|+.+|++.|.++|+..+ .+....++|++|+++||||+|+||+++++|+.|++. ++.+|++++.-+|..+
T Consensus 179 ~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~i 258 (503)
T KOG1291|consen 179 GVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAI 258 (503)
T ss_pred heeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHHH
Confidence 9999999999999999889999885 346788999999999999999999999999988754 4467888999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhccCC-CCCCC-----ccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhh
Q 013769 274 ALAVAFLINVSVISVS-GAVCSSSN-INPED-----QASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (437)
Q Consensus 274 g~~~~~~i~~~i~i~a-A~vl~~~g-~~~~~-----~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~ 346 (437)
++.+++.+|.+++.+. |..+++.. .+..+ .....+.|+.+++..|...+|+++.++|++|++++|+||+++++
T Consensus 259 al~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~Ifai~lLasGQSstitgT 338 (503)
T KOG1291|consen 259 ALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYIFAIGLLASGQSSTITGT 338 (503)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHHHHHHHHHHHHCCCcccceee
Confidence 9999999999998766 66665443 22211 11123457888999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCccccCCCC
Q 013769 347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHA 426 (437)
Q Consensus 347 ~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~LP~~~~~ll~l~n~k~img~~r 426 (437)
++||+++|||+|+++++|.||.+||.++++|++.+.+..|.++..++.++.|++++++|||+++|++.++++|++||+|+
T Consensus 339 yaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~~~ 418 (503)
T KOG1291|consen 339 YAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGVFK 418 (503)
T ss_pred eeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhhhc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CchhhHHhhc
Q 013769 427 NSIAFSGKSM 436 (437)
Q Consensus 427 n~~~~~~l~~ 436 (437)
|++..+...|
T Consensus 419 ~~~~~~~~~~ 428 (503)
T KOG1291|consen 419 NGLVTEELTW 428 (503)
T ss_pred cCccceeeee
Confidence 9998887766
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=1e-74 Score=588.97 Aligned_cols=373 Identities=50% Similarity=0.813 Sum_probs=334.3
Q ss_pred HHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHH
Q 013769 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (437)
Q Consensus 44 ~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~ 123 (437)
|++++.+|||++++++|+|||+++|++++|++|||+|+|++++++++++++||+++|+|++|||++.|.|||+|||+..+
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 013769 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA 203 (437)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~ 203 (437)
..|+..+++.++++++|+.|+++++|+++|+|.+++++++.+.++++++..+++||++||++..++.+|.+||+++++.+
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~ 160 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYA 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999998888766555554455566799999999999999999999999999
Q ss_pred CCCHHHhhccccccccCC--CChHHHHHHHhccchhhHHHHHHHHHHhhccCCCChh-hHH-------------HHHHHH
Q 013769 204 KPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVR-SIK-------------EACRFY 267 (437)
Q Consensus 204 ~p~~~~v~~g~~~P~~p~--~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~~~~~-~~~-------------~~~~~~ 267 (437)
+|||+|+++|.++|+.|. ++.+..++|++|+|++||++|+||++++||+++++++ .+| ...++.
T Consensus 161 ~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
T TIGR01197 161 KPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSFS 240 (390)
T ss_pred CCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHHH
Confidence 999999999988998763 3557889999999999999999999999999876542 222 234678
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhh
Q 013769 268 MIESGFALAVAFL-INVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT 346 (437)
Q Consensus 268 ~~d~~~g~~~~~~-i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~ 346 (437)
|.|+.+++....+ +|.++++++|+++|+++.. .+ +.++.|++++|||.+|++++++|++|+++|++||+++++
T Consensus 241 ~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~-~~-----~~~~~~~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~ 314 (390)
T TIGR01197 241 INEFVIALFTAALFVNTNILVVAGATLFNSNNN-AD-----AADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGT 314 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cC-----cCCHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8999999987666 7999999999999875321 11 236889999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccc
Q 013769 347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKM 422 (437)
Q Consensus 347 ~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~LP~~~~~ll~l~n~k~im 422 (437)
++++++++|++|+|.++|.|+..++.++++|++++..+.+..+|.++++++|++|++.||++++|+++++|||++|
T Consensus 315 ~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 315 YSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 9999999999999999999999998888899887766655557999999999999999999999999999999998
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-72 Score=571.49 Aligned_cols=392 Identities=42% Similarity=0.646 Sum_probs=360.3
Q ss_pred ccccCCcchHHHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Q 013769 34 QIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHC 113 (437)
Q Consensus 34 ~~~~~~~~~~~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~i 113 (437)
+..+.+..++|+.++++|||++++.+|+||||++|++|+|++|||+|+|++++++++++++|++++|+|++|||++.|.|
T Consensus 4 ~~~~~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~i 83 (416)
T COG1914 4 VASKKKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAI 83 (416)
T ss_pred ccccchHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 013769 114 RNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMA 193 (437)
Q Consensus 114 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~ 193 (437)
||||+|+++++.|+.++++++++|++|++|+|+++|+++|+|+.++++++++.+++++..+ +||++||+...++.++.
T Consensus 84 r~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~ 161 (416)
T COG1914 84 RERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLV 161 (416)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776666554 69999999999999999
Q ss_pred HHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHH
Q 013769 194 GCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGF 273 (437)
Q Consensus 194 l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~~~~~~~~~~~~~~~~d~~~ 273 (437)
+||+++++..+|+|+++.++.++|+.|..+.+.++++++|+|+|||+.|.||+.++|++. ++++.+++.|+.++|+.+
T Consensus 162 i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~--~~~~~~~~~~~~~~d~~i 239 (416)
T COG1914 162 ILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI--KGEENLRALRYSRIDTII 239 (416)
T ss_pred HHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--cchhHHHHHHHHHHHHHH
Confidence 999999999999999999998899988645688999999999999999999999987432 234456778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 274 ALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 274 g~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
++....+++.+++++++..+|.++.. ++ ..+++|+.+.+.|.+|+.+..+|++++++++++|++++++++++++
T Consensus 240 ~~~~a~lv~~ail~~aa~~~~~~~~~-~~-----~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~ 313 (416)
T COG1914 240 GMIIALLVNLAILIVAAAGFHNSGPN-QD-----VADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVM 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc-cc-----ccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHH
Confidence 99999999999999999999877642 11 1267788899999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCccccCCCCCchhhHH
Q 013769 354 QGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAFSG 433 (437)
Q Consensus 354 ~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~LP~~~~~ll~l~n~k~img~~rn~~~~~~ 433 (437)
+++.+++.++|.||..++.+.++|++.+.+..| +|.++++++|+++++.+|+.++|++.+++||++||||+|++++|+
T Consensus 314 ~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~ 391 (416)
T COG1914 314 EGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTV 391 (416)
T ss_pred HhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHH
Confidence 999999988999999999999999888878887 599999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 013769 434 KSML 437 (437)
Q Consensus 434 l~~~ 437 (437)
++|.
T Consensus 392 ~~~~ 395 (416)
T COG1914 392 LGWI 395 (416)
T ss_pred HHHH
Confidence 9984
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=2.4e-68 Score=540.70 Aligned_cols=356 Identities=40% Similarity=0.637 Sum_probs=323.8
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 013769 66 FETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTA 145 (437)
Q Consensus 66 i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a 145 (437)
++|++|+||+|||+|+|+++++++++|++||+++|+|++|||++.|.+||||||++.|+.++...++++.++.+|+.|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChH
Q 013769 146 FALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGAT 225 (437)
Q Consensus 146 ~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~ 225 (437)
+++++++|+|.+.++++.++.+++++++.+++||++||++++++.+|.+||+++++.++|||+++.+|++.|++|+.+.+
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~ 160 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSL 160 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHH
Confidence 99999999999999999998888888855566999999999999999999999999999999999999766999975668
Q ss_pred HHHHHHhccchhhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 013769 226 GLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQAS 305 (437)
Q Consensus 226 ~~~valiG~ti~p~~~f~~ssl~~~k~~~~~~~~~~~~~~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~ 305 (437)
..++|++|||++||++|+|||.++||+|+.+++..++++|.+|+|+.+|++++.+++.++++++|.++|+++.+.+
T Consensus 161 ~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~---- 236 (358)
T PF01566_consen 161 LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVE---- 236 (358)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh----
Confidence 8899999999999999999999999999774321125688999999999999999999999999999995554322
Q ss_pred cccccHHHHHHHHHHhHh-HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 013769 306 CKDLDLNKASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALI 384 (437)
Q Consensus 306 ~~~~~~~~~a~~l~~~lG-~~a~~lF~igl~aa~fss~i~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~ 384 (437)
+.+|++++|||.+| +|++++|++|+++++|+|++++++++++.++++++++.+++.|+..++...+.|+..+...
T Consensus 237 ----~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (358)
T PF01566_consen 237 ----TAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALL 312 (358)
T ss_pred ----hHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999 8999999999999999999999999999999999998888777766677777777766666
Q ss_pred cCccc-hHHHHHHHHHHHHhHHHHHHHHHHHHhcCccccCCCCCch
Q 013769 385 GGSAG-AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSI 429 (437)
Q Consensus 385 ~g~~~-~~~Ll~~a~v~~~i~LP~~~~~ll~l~n~k~img~~rn~~ 429 (437)
.+.+. |.++++++|+++++.+|++.+++++++|||++||||||+|
T Consensus 313 ~~~~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 313 IGAPGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 55432 5789999999999999999999999999999999999986
No 6
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.94 E-value=3.4e-06 Score=87.06 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=103.1
Q ss_pred HhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCHHHHHHhhCCChhHHHH
Q 013769 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT--GKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 48 ~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vT--G~~l~~~ir~~~~~~~~~~~ 125 (437)
|.+|--.+++...+|+|=+.-=.+++...=.-.+..++++.++++.-+.+..|...-+ +.++.+..+|.+||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 4567778888889999988777665444434456666777777788888888887765 78889999999999988876
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhh------CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013769 126 WVLAEIAIVACDIPEVIGTAFALNMLF------KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (437)
Q Consensus 126 ~~~~~l~~~~~~~~~~~G~a~~l~ll~------gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~ 199 (437)
++...+.......+-+.|.+.-+.-++ ++|.+....+..+....+++.+. |.++|+...++..|.+.|+..
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~---~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT---KAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 654333222222233333333332233 34555555444443333444544 688998888888898888877
Q ss_pred HhhcCCCHH
Q 013769 200 LGYAKPEAK 208 (437)
Q Consensus 200 ~~~~~p~~~ 208 (437)
....-|+|.
T Consensus 161 ~~~~~p~~~ 169 (394)
T PF03222_consen 161 VVYLIPHWN 169 (394)
T ss_pred HHHHhhhcC
Confidence 766656554
No 7
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.91 E-value=1e-05 Score=83.67 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=81.2
Q ss_pred HhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHhhhhcCCCHHHHHHhhCCCh-hHHHHHHH
Q 013769 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC----AALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILWVL 128 (437)
Q Consensus 54 ~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~----~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~-~~~~~~~~ 128 (437)
+-.+++.++.++....+..+-++|+..+|..+...+ ..+++...--|.+ ..+..|.+++||+++ .....-+.
T Consensus 12 ~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~~ 88 (407)
T TIGR00813 12 ASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVLS 88 (407)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHHH
Confidence 344566888999999999999999888775554332 2233333333433 678899999999984 33333333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 129 AEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 129 ~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
..+..+.....++.|.+..++.++|+|.+.++++.++++.+....+.
T Consensus 89 ~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG 135 (407)
T TIGR00813 89 LILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGG 135 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcc
Confidence 44555666677888888888888999998888777765554444543
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.89 E-value=2.4e-05 Score=82.60 Aligned_cols=120 Identities=10% Similarity=0.143 Sum_probs=74.6
Q ss_pred hHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHh---h-hhcCCCHHHHHHhhCCChh-HHHHHHH
Q 013769 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII-QSLAANL---G-VVTGKHLAEHCRNEYPKVP-NFILWVL 128 (437)
Q Consensus 55 l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~-q~~~~R~---g-~vTG~~l~~~ir~~~~~~~-~~~~~~~ 128 (437)
-+.++.+++++....+..+.++|+...|......+..+++ -..+.|+ . -..-.++.|.+++||+++. .+...+.
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~ 129 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSIS 129 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHH
Confidence 3455678888888888888888887433322222222211 1122222 1 1234789999999999553 4444444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHh
Q 013769 129 AEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (437)
Q Consensus 129 ~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~ 174 (437)
..+..+.....++.|.+..++.++|+|.+.++++.++++.+....+
T Consensus 130 ~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 175 (471)
T TIGR02119 130 LLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFG 175 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 4444555556788888888998999999888877766544444444
No 9
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.74 E-value=0.00028 Score=74.77 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=72.3
Q ss_pred hHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHh---h-hhcCCCHHHHHHhhCCChh-HHHHHHHHH
Q 013769 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANL---G-VVTGKHLAEHCRNEYPKVP-NFILWVLAE 130 (437)
Q Consensus 57 a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~-~~q~~~~R~---g-~vTG~~l~~~ir~~~~~~~-~~~~~~~~~ 130 (437)
.++.++.++....+....++|++..|......+..+ .+...+.|+ + -.-..+..|.+++||+++. .+...+...
T Consensus 53 ~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~ 132 (483)
T PRK09442 53 IATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLL 132 (483)
T ss_pred HHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHH
Confidence 355678888888888888888875554332222111 111122222 1 2245788999999998654 333333333
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHh
Q 013769 131 IAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (437)
Q Consensus 131 l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~ 174 (437)
+..+.....++.|.+..++.++|+|.+.++++..+++.+...++
T Consensus 133 ~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 176 (483)
T PRK09442 133 VFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFG 176 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 44445556778888888898999999888877666544444443
No 10
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.74 E-value=1.6e-05 Score=82.12 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=79.5
Q ss_pred HhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhhcCCCHHHHHHhhCCChh--HHHHHHHHHHH
Q 013769 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII-QSLAANLGVVTGKHLAEHCRNEYPKVP--NFILWVLAEIA 132 (437)
Q Consensus 56 ~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~-q~~~~R~g~vTG~~l~~~ir~~~~~~~--~~~~~~~~~l~ 132 (437)
..++.+++++....+..+.++|+.-+|..+-..+...++ ..++.|+=.....+..|.+++|||+.. .....+...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 446688999999999999999999888877666555443 446778888888999999999999877 44433333444
Q ss_pred HHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 013769 133 IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTL 168 (437)
Q Consensus 133 ~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~ 168 (437)
.+.....++.|.+..++.++|+|...++++.+++..
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~ 132 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVI 132 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHH
Confidence 445556788888888888999998887777655433
No 11
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.71 E-value=0.0002 Score=75.93 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=71.3
Q ss_pred hHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHhhhh-----cCCCHHHHHHhhCCChhHH---HHHH
Q 013769 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI-IQSLAANLGVV-----TGKHLAEHCRNEYPKVPNF---ILWV 127 (437)
Q Consensus 57 a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~-~q~~~~R~g~v-----TG~~l~~~ir~~~~~~~~~---~~~~ 127 (437)
++++++..+....+....++|+...|..+-..+..++ ....+.|+-.. .-.+..|.+++|||+.... ..-+
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai 127 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISAL 127 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHH
Confidence 3455666666777777788888877775422221111 12233343322 2356899999999853222 2222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 128 ~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
...+..+.....++.|.+..++.++|+|.+.++++..+++.+....+.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 128 IILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhh
Confidence 222333344556677788888888999999888877765555555543
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.70 E-value=5.3e-05 Score=78.35 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=94.2
Q ss_pred HhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHhhCCChhHHHH
Q 013769 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 48 ~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~v--TG~~l~~~ir~~~~~~~~~~~ 125 (437)
|.+|-.++++.+.+|+|-+.-=.++|...=+-.+-.++++.+++...-....|...- .|.++.+..+|.+||.+++..
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 678889999999999999988777766433333333444444233222224554333 357788899999999988876
Q ss_pred HHHHHHHHHHhhHHHHHHHHH----HHHHhh--CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013769 126 WVLAEIAIVACDIPEVIGTAF----ALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (437)
Q Consensus 126 ~~~~~l~~~~~~~~~~~G~a~----~l~ll~--gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~ 199 (437)
++.-.+.......+-..|.+. .++-.+ ++|.+.+.++..+....+++.+. |.++|+...++..|.++|+..
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~---~~v~~~n~~L~~~~ii~~~~~ 160 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGT---SSVDLFNRFLFSAKIIFLVVM 160 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 554433322222222223211 111112 34655555444433333444443 789999999998888888876
Q ss_pred HhhcCCCHH
Q 013769 200 LGYAKPEAK 208 (437)
Q Consensus 200 ~~~~~p~~~ 208 (437)
....-|+|.
T Consensus 161 ~~~l~p~~~ 169 (403)
T PRK15132 161 LALMMPHIH 169 (403)
T ss_pred HHHHHHhcC
Confidence 666667666
No 13
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.66 E-value=0.0002 Score=76.31 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=76.7
Q ss_pred HhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHhhhh-----cCCCHHHHHHhhCCCh---hHHHHH
Q 013769 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVV-----TGKHLAEHCRNEYPKV---PNFILW 126 (437)
Q Consensus 56 ~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~-~~q~~~~R~g~v-----TG~~l~~~ir~~~~~~---~~~~~~ 126 (437)
+.++.++..+.......+.++|++..|..+-..+..+ .......|+-.- --.+..|.+++||++. ......
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 3456788888888888888999998776543322211 223345555432 2358899999999863 222222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 127 VLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 127 ~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
+...+..+.....++.|.+..++.++|+|.+.++++.++++.+...++.
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGG 179 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 2233334444556677888888888999988888777665555555544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.63 E-value=0.0003 Score=73.08 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=103.0
Q ss_pred HhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCCHHHHHHhhCCChhHHHHHHHH-
Q 013769 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT---GKHLAEHCRNEYPKVPNFILWVLA- 129 (437)
Q Consensus 54 ~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vT---G~~l~~~ir~~~~~~~~~~~~~~~- 129 (437)
+..+...+|+|=+.-=.++|...=+-.+-..+++.++++.......|..... |.+..+..+|++||.++.+.++.-
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 5667778999999988888888777778888888888888877778887765 678999999999998887654332
Q ss_pred --HHHHHHh---hHHHHHHHHHHHHHhhC---chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 013769 130 --EIAIVAC---DIPEVIGTAFALNMLFK---IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (437)
Q Consensus 130 --~l~~~~~---~~~~~~G~a~~l~ll~g---ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~ 201 (437)
....+.. .+.|....-. .|- +| +|.++..++..+.-..+++.++ |.++|++..++..+.++|+...+
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl-~~q-l~~~~~~r~l~slifv~~l~~iv~~G~---~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFW-ENQ-LGFAPLNRGFVALFLLLLMAFVIWFGK---DLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhh-cCcCCccHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1222221110 111 23 3565555444333333444444 89999999999999999998888
Q ss_pred hcCCCHHH
Q 013769 202 YAKPEAKE 209 (437)
Q Consensus 202 ~~~p~~~~ 209 (437)
..-|+|..
T Consensus 181 ~LiP~w~~ 188 (443)
T PRK13629 181 SLIPYWNS 188 (443)
T ss_pred HHHHHcCH
Confidence 88888873
No 15
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.61 E-value=0.0005 Score=74.12 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=83.9
Q ss_pred HHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHhhhhcCCCHHHHHHhhCC-ChhHHHHHHHH
Q 013769 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL--IIQSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (437)
Q Consensus 53 G~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~--~~q~~~~R~g~vTG~~l~~~ir~~~~-~~~~~~~~~~~ 129 (437)
|+-.++.+++..+..-....+.++|++-+|..+ ...+.+ ....++.|+--....+..|.+++||+ |..+....+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445566678888888888888899999877553 332222 11223444444445889999999997 54565544555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 130 ~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
.+..+.....++.|.+..++.++|+|.+.++++.++++.+....+.
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GG 199 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGG 199 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 5555666678888999889999999999888887776555555553
No 16
>PRK09395 actP acetate permease; Provisional
Probab=98.59 E-value=0.00054 Score=73.89 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=85.2
Q ss_pred HHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHhhhhcCCCHHHHHHhhCCC-hhHHHHHHHH
Q 013769 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI--IQSLAANLGVVTGKHLAEHCRNEYPK-VPNFILWVLA 129 (437)
Q Consensus 53 G~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~--~q~~~~R~g~vTG~~l~~~ir~~~~~-~~~~~~~~~~ 129 (437)
|+-+.+.++++.+.......+.++|+.-.|..+-. .+.++ ......|+=-..-.+..|.+++||++ ..+...-+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~-~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGF-LVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 45566677888888888888999999876654422 22221 12235555555568899999999984 4565554555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 130 ~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
.+..+.....++.|.+..++.++|+|.+.++++.++++.+....+.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GG 201 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGG 201 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Confidence 5566666678888888888889999999888887776555555554
No 17
>PRK12488 acetate permease; Provisional
Probab=98.58 E-value=0.00081 Score=72.50 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHhhhhcCCCHHHHHHhhCC-ChhHHHHHHHH
Q 013769 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (437)
Q Consensus 53 G~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~--q~~~~R~g~vTG~~l~~~ir~~~~-~~~~~~~~~~~ 129 (437)
|+-+++.++++.+....+..+.++|++.+|..+ +..+.+++ ...+.|+=-..-.+..|.+.+||+ |..+....+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 455667788888888888889999999877653 33333322 234444444445789999999998 55666555555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 130 ~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
.+..+.....++.|.+..++.++|+|.+.++++.++++.+....+.
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GG 199 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGG 199 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc
Confidence 5566677778888999889999999999888777765555555543
No 18
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.53 E-value=0.00024 Score=73.47 Aligned_cols=153 Identities=10% Similarity=0.025 Sum_probs=87.9
Q ss_pred HhhhhHHhHhHhhcCCCchhHHHHHHHhhhh--HHHHHHHHHHHHHH----HHHHHHHHhhhhcCCCHHHHHHhhCCChh
Q 013769 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKY--ELLWIILVASCAAL----IIQSLAANLGVVTGKHLAEHCRNEYPKVP 121 (437)
Q Consensus 48 ~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy--~LLW~ill~~~~~~----~~q~~~~R~g~vTG~~l~~~ir~~~~~~~ 121 (437)
|.+|=..+++...+|+|=+. -..+.+..|+ +.+- ++++.+++. .+-|..-|+. .|.++....|+..||.+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLa-LP~~~a~~Gf~~s~~l-l~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFA-LPVDLAGAWFFWGAFI-LIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTW 85 (415)
T ss_pred chhhhhHHhhhccHhHHHHH-HHHHHhcccHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHH
Confidence 77898888888899998664 3444455554 2222 222222222 3667776664 57778888888899988
Q ss_pred HHHHHHHHH---HHHHHhhHHHHHHHHHHHHHh----h--CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 013769 122 NFILWVLAE---IAIVACDIPEVIGTAFALNML----F--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTM 192 (437)
Q Consensus 122 ~~~~~~~~~---l~~~~~~~~~~~G~a~~l~ll----~--gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m 192 (437)
.++.|+... .+.....+ .|.+.-++-. . ++|...+.++..+....+++.+. |.+||+...++..|
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYi---sggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt---~~vd~~nr~l~~~~ 159 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYI---SANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS---LAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHH
Confidence 877665432 23332222 2222222222 2 45666544444444344555554 56777777777778
Q ss_pred HHHHHHHHhhc--CCCHHHh
Q 013769 193 AGCFFAELGYA--KPEAKEV 210 (437)
Q Consensus 193 ~l~fv~~~~~~--~p~~~~v 210 (437)
.++|+...... +-|+..+
T Consensus 160 ii~f~~~~~~l~~~i~~~~L 179 (415)
T PRK09664 160 IISFVIVFGSFFFQVDYSIL 179 (415)
T ss_pred HHHHHHHHHHHhhcccHHHH
Confidence 88888655543 4455544
No 19
>PRK10483 tryptophan permease; Provisional
Probab=98.52 E-value=0.00015 Score=75.09 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=91.0
Q ss_pred HHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhh--HHHHHHHHHHHHHH---HHHHHHHHhhhhcCCCHHHHHHhhCCCh
Q 013769 46 LFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKY--ELLWIILVASCAAL---IIQSLAANLGVVTGKHLAEHCRNEYPKV 120 (437)
Q Consensus 46 ~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy--~LLW~ill~~~~~~---~~q~~~~R~g~vTG~~l~~~ir~~~~~~ 120 (437)
-.+.+|=.++++...+|+|=+.- ..+-+..|| +.+-.++.-..+.+ .+-|..-|+. -|.++....+|..||.
T Consensus 10 ~~~~~g~~~iIaGT~IGaGMLaL-P~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~ 86 (414)
T PRK10483 10 SPSLLGGVVIIGGTIIGAGMFSL-PVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKG 86 (414)
T ss_pred CCcHHHHHHHHHHchHhHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChH
Confidence 35678999999999999987654 333344444 33322222222222 3666666653 4667778888888998
Q ss_pred hHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhh-----CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 013769 121 PNFILWVLA---EIAIVACDIPEVIGTAFALNMLF-----KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTM 192 (437)
Q Consensus 121 ~~~~~~~~~---~l~~~~~~~~~~~G~a~~l~ll~-----gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m 192 (437)
+.++.|+.. ..+.+... +.|.+.-++-.+ ++|.+.+.++..+....+++.+. |.+||+..+++..|
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AY---isg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt---~~vd~~n~~l~~~~ 160 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAY---ISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST---KAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHH
Confidence 877655433 23333222 223332222222 45777776665554444555554 67777777788888
Q ss_pred HHHHHHHHhhc--CCCHHHh
Q 013769 193 AGCFFAELGYA--KPEAKEV 210 (437)
Q Consensus 193 ~l~fv~~~~~~--~p~~~~v 210 (437)
.++|+...... +-+...+
T Consensus 161 i~~f~~~~~~l~~~i~~~~L 180 (414)
T PRK10483 161 VITFFLTFGSLLGHVQPATL 180 (414)
T ss_pred HHHHHHHHHHHHhhcCHHHH
Confidence 88887665543 4444443
No 20
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.50 E-value=0.0015 Score=69.46 Aligned_cols=126 Identities=14% Similarity=0.227 Sum_probs=80.8
Q ss_pred HhhhhHHhHhHh--hcCCCchhHHHHHHHh--hhhHHHHHHHHHHHHHH-HHHHHHHHhhhhc----CCCHHHHHHhhCC
Q 013769 48 AYIGPGFLVSIA--YIDPGNFETDLQSGAQ--YKYELLWIILVASCAAL-IIQSLAANLGVVT----GKHLAEHCRNEYP 118 (437)
Q Consensus 48 ~~lGPG~l~a~a--~ig~G~i~t~~~aGA~--~Gy~LLW~ill~~~~~~-~~q~~~~R~g~vT----G~~l~~~ir~~~~ 118 (437)
|.+||. +.+.+ ..+-+.++---..|.- +|+.-+|..+...+..+ .......|+=..+ =.++.|.+++||+
T Consensus 38 R~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~ 116 (493)
T COG0591 38 RSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFG 116 (493)
T ss_pred CcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcC
Confidence 346666 33332 3444444444444444 49999998887643333 3344455555555 5788999999999
Q ss_pred -ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHh
Q 013769 119 -KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (437)
Q Consensus 119 -~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~ 174 (437)
+..+...-+...+..+.....++.|.+..++..+|+|...+..+....+.+...++
T Consensus 117 s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~g 173 (493)
T COG0591 117 SKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLG 173 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHc
Confidence 66666555556666667777888888888888899988777766555444444444
No 21
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.48 E-value=0.00043 Score=71.60 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=70.3
Q ss_pred hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--hhhc-CCCHHHHHHhhCCChhHHHHHHHHHHHHH--
Q 013769 60 YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANL--GVVT-GKHLAEHCRNEYPKVPNFILWVLAEIAIV-- 134 (437)
Q Consensus 60 ~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~--g~vT-G~~l~~~ir~~~~~~~~~~~~~~~~l~~~-- 134 (437)
.+|.|=+.-=.++|.+-=+..+-..+++.++.+..+....|. .--. ++++.|..+|.+||++++...+.-.+...
T Consensus 16 ~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i 95 (397)
T TIGR00814 16 AIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPI 95 (397)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 344443333333443321223333333444445555544444 3333 77999999999999888765332221111
Q ss_pred ----HhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 013769 135 ----ACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 207 (437)
Q Consensus 135 ----~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~ 207 (437)
....++..+.-..-.+....|+..... .+...++.+.-+.|-|.+.|+..+++..+.+.++...+..-|+|
T Consensus 96 ~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~--lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 96 LLIYSVAITNDSASFLVNQLGTAPPLRGLLS--LALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH--HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111222222111111112234432121 11122222333345688999998888777776766665555554
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=98.48 E-value=0.0012 Score=69.41 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=75.1
Q ss_pred CCCCccccCCcccccCCcchHH-HHHHhhhhHHhHhHh-hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013769 23 NAPLIKNEDADQIVVPDKTSWK-NLFAYIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAAN 100 (437)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~lGPG~l~a~a-~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R 100 (437)
||++-+.++.+.+.++.+++++ +....++=|-++..+ +++||......-.++-.+| +-.-++..+....+.|++.|
T Consensus 3 ~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~--li~~~~~~~~~~~~aEl~~~ 80 (458)
T PRK10249 3 NASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY--GVAGIIAFLIMRQLGEMVVE 80 (458)
T ss_pred CccccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 4444444444333333344432 223345555454444 5677776553322222222 22233445556677788877
Q ss_pred hhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHHHhhcchh
Q 013769 101 LGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVR 179 (437)
Q Consensus 101 ~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~g-ip~~~~~~i~~~~~~~ll~~~~~~y~ 179 (437)
+=. +| +..+..++.+|+.+++......-+........|....+.-++.+++ .|.+....+..+...++-..+.+.+.
T Consensus 81 ~P~-~G-g~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~~gv~~~~ 158 (458)
T PRK10249 81 EPV-SG-SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYG 158 (458)
T ss_pred CCC-CC-CHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhcchhhh
Confidence 766 44 6677888999998776542111122222233444434433444443 45554332222211222223333366
Q ss_pred HHHHHHH
Q 013769 180 KLEFLIA 186 (437)
Q Consensus 180 ~~E~~~~ 186 (437)
++|.++.
T Consensus 159 ~i~~~~~ 165 (458)
T PRK10249 159 ETEFWFA 165 (458)
T ss_pred hHHHHHH
Confidence 7776653
No 23
>PRK11375 allantoin permease; Provisional
Probab=98.44 E-value=0.0022 Score=68.10 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHH
Q 013769 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVL 128 (437)
Q Consensus 78 y~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~ 128 (437)
++.++.+++++++..++.-..++.|..+|.+-.-..|..||++.+.+.-+.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~~~~ 110 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLL 110 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHHHHH
Confidence 346788889999999999999999999999999999999998776554333
No 24
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.42 E-value=0.00027 Score=73.01 Aligned_cols=273 Identities=16% Similarity=0.145 Sum_probs=146.6
Q ss_pred HhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---------HHHHHHhhCCChhHHHHHHH
Q 013769 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKH---------LAEHCRNEYPKVPNFILWVL 128 (437)
Q Consensus 58 ~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~---------l~~~ir~~~~~~~~~~~~~~ 128 (437)
++-+|+||++--+.+=+.=|-.-+..+.++.++.......-..++...++. +.--+++.++++|.-.+..+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 457899998888777777788877667777777766666666666665433 55567777765432221111
Q ss_pred HHHHHH--HhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhh---c
Q 013769 129 AEIAIV--ACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY---A 203 (437)
Q Consensus 129 ~~l~~~--~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~---~ 203 (437)
..+... .....+.--++.+++.-|++|.|...++..+++ .+..++. -|++-|+...++=+|.+.|+...+. .
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~-~~vi~GG--ikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~ 186 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILV-ALVIFGG--IKRIAKVSEKLVPFMAILYILGGLIIIII 186 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHH-HHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 112222223455566668998877655544432 3334433 6788888888888888888865542 2
Q ss_pred C-C----CHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHHHH-----hhccCCCC---------hhhHHHHH
Q 013769 204 K-P----EAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALV-----LSRKIPRS---------VRSIKEAC 264 (437)
Q Consensus 204 ~-p----~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ssl~-----~~k~~~~~---------~~~~~~~~ 264 (437)
+ + -..++.++.|.|+-- .-|.+|.+++--. +...- .|.|.... |+-.|+.+
T Consensus 187 n~~~ip~~~~~If~~AF~~~aa-------~GG~~G~~i~~ai---~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl 256 (416)
T PF01235_consen 187 NIDQIPAAFSLIFSSAFTPKAA-------FGGFAGSTIMMAI---RQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGL 256 (416)
T ss_pred hhhhHHHHHHHHHHHHcCCccc-------hhhHHHHHHHHHH---HHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHee
Confidence 2 1 234455554444321 2345565553211 11110 12222110 11112211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 013769 265 ---RFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSS 341 (437)
Q Consensus 265 ---~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss 341 (437)
-...+|+.+ + +-++..++++++.- + ..++.+ ..+=..++++..+|+|+.++..+.++.=+|||
T Consensus 257 ~~~~~vFiDTii---V-Ct~TalvIl~tG~~-~----~~~~~~-----g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTT 322 (416)
T PF01235_consen 257 VQMFEVFIDTII---V-CTITALVILVTGVW-S----WGSGLE-----GAALTQAAFSTVLGSWGPYFVAIALFLFAFTT 322 (416)
T ss_pred eeeehHhHHHHH---H-HHHHHHHhhccCCC-C----CCCcch-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 012234322 2 22222223222210 0 111111 12223568999999999999999999999999
Q ss_pred hhhhhhhhHHHHhhhc
Q 013769 342 TITGTYAGQYVMQGFL 357 (437)
Q Consensus 342 ~i~~~~a~~~~~~g~~ 357 (437)
.++..+.+....+-..
T Consensus 323 ilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 323 ILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9988877665555444
No 25
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.40 E-value=0.00073 Score=69.11 Aligned_cols=72 Identities=19% Similarity=0.094 Sum_probs=38.0
Q ss_pred HHHHHHHHHhHhH-HHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 013769 312 NKASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALI 384 (437)
Q Consensus 312 ~~~a~~l~~~lG~-~a~~lF~igl~aa~fss~i~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~ 384 (437)
+++.+.++..+|. |...+..++...+..+|.+...++..-.+.+.++++.++. +|.....+..+|.+++..+
T Consensus 253 ~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~-~~~~~~~~~~~~pl~~a~~ 325 (381)
T TIGR00837 253 DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKK-GRFKTGLLTFLPPLVFALF 325 (381)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCchhhhhhHHhHHHHHHH
Confidence 3445556655554 4677778887788878877766653323444444322221 1233334444555554444
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.37 E-value=0.0041 Score=65.64 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 313 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 313 ~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
...++++...|+++..++.++.+.+.+++..+..++..+.+
T Consensus 276 p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 276 PFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34556777777888888888888888887776666655544
No 27
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.31 E-value=0.0095 Score=64.31 Aligned_cols=120 Identities=12% Similarity=0.156 Sum_probs=81.4
Q ss_pred HHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHH---HH-HHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCCh-hHHHHHH
Q 013769 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIIL---VA-SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILWV 127 (437)
Q Consensus 53 G~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~il---l~-~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~-~~~~~~~ 127 (437)
|+-+.++.++..+.......+.++|++.+|... ++ .++.+++-...-|.+. .+..|.+.+||+++ .++...+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 444566678888888888888889988766643 11 2233455555556654 58899999999854 4554444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 128 ~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
...+..+.....++.|.+..++.++|+|.+.++++.++++.+....+.
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG 164 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGG 164 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 444555566667778888889989999999888877765554444543
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.23 E-value=0.0091 Score=63.08 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=30.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 314 ~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
+.+..+..+|+++..++.++...+.+++..+...++.+..
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677789998889999888888888777666665554
No 29
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.20 E-value=0.0068 Score=63.02 Aligned_cols=283 Identities=16% Similarity=0.115 Sum_probs=133.5
Q ss_pred HhHhhcCCCchhHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHhhhhcCCC-H----HHHHHhhCC-ChhHHHH
Q 013769 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVA----SCAALIIQSLAANLGVVTGKH-L----AEHCRNEYP-KVPNFIL 125 (437)
Q Consensus 56 ~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~----~~~~~~~q~~~~R~g~vTG~~-l----~~~ir~~~~-~~~~~~~ 125 (437)
..++-+|.||+..-..+=+.=|.+-+..+.++ ...++.--.++.||--..+++ . ..-++++.+ |+++..+
T Consensus 56 ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lf 135 (425)
T TIGR00835 56 SLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLF 135 (425)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHH
Confidence 34567888888777777444455543333333 334444445555554333333 1 234555554 5444432
Q ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhc-
Q 013769 126 WVLAEIAIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA- 203 (437)
Q Consensus 126 ~~~~~l~~~~-~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~- 203 (437)
-++ .+..+. ...-+.--.+..++..+++|.|...++..+++. ++.++ |.|++-|+...++-.|.+.|+...+..
T Consensus 136 a~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~-~vi~G--Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii 211 (425)
T TIGR00835 136 AVF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTA-LIIFG--GLKRIAKISSVVVPFMALLYVIMALYII 211 (425)
T ss_pred HHH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 111111 011111112333443468888776555443322 22333 478888988888888888875443321
Q ss_pred -------CCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHHHH--hhccCCC---------ChhhHHHHHH
Q 013769 204 -------KPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALV--LSRKIPR---------SVRSIKEACR 265 (437)
Q Consensus 204 -------~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ssl~--~~k~~~~---------~~~~~~~~~~ 265 (437)
.|-+..+.++-|.|+- ..=|.+|++++--.-+--+... .|.|... .++-.|+.+
T Consensus 212 ~~n~~~lp~~~~~If~~AF~~~a-------~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl- 283 (425)
T TIGR00835 212 IMNIEQLPAVISLIFRSAFGGDA-------AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGL- 283 (425)
T ss_pred HHhHHHHHHHHHHHHHHhCCchh-------hHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHH-
Confidence 2445555565544431 1233455443321111000000 1222110 011122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhh
Q 013769 266 FYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITG 345 (437)
Q Consensus 266 ~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~ 345 (437)
...++..+--++-+-++..++++++. +.+ +++.+ ...+. .++++..+|+|+.++..+.++.-+|+|.++.
T Consensus 284 ~~~~~vfiDTivvCt~Talvil~tg~--~~~---~~~~~---g~~lt--~~af~~~~g~~g~~~v~i~~~lFaftTii~~ 353 (425)
T TIGR00835 284 VQMLGVFIDTMIVCTATALVILLSGV--WNN---GEGLS---GAQLT--QQALSYGLGSFGAVFVAVALFLFAFSTIIGW 353 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCc--cCC---CCCCc---HHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22233333222223333333333221 110 11110 01222 2578888999999999999999999999988
Q ss_pred hhhhHHHHhhhcCCC
Q 013769 346 TYAGQYVMQGFLDLR 360 (437)
Q Consensus 346 ~~a~~~~~~g~~~~~ 360 (437)
.+.+....+=.++.|
T Consensus 354 ~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 354 YYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHHhcCCC
Confidence 776655554443444
No 30
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.15 E-value=0.006 Score=63.94 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=56.2
Q ss_pred hHhHhhcCCCchhHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHH
Q 013769 55 LVSIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (437)
Q Consensus 55 l~a~a~ig~G~i~t~~~aGA~~G---y~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l 131 (437)
+.....+...++.+..... .+| ++-++.+++++++...+.-..++.|..+|.+-....|..||++.+.+.-+...+
T Consensus 22 ~W~~~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i 100 (442)
T TIGR00800 22 LWLGAAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIV 100 (442)
T ss_pred HHHHHhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHH
Confidence 3344444445555554443 233 346788888899999999999999999999999999999998877665444444
Q ss_pred HHHH
Q 013769 132 AIVA 135 (437)
Q Consensus 132 ~~~~ 135 (437)
..+.
T Consensus 101 ~~ig 104 (442)
T TIGR00800 101 MAIG 104 (442)
T ss_pred HHHH
Confidence 4433
No 31
>PRK10484 putative transporter; Provisional
Probab=98.14 E-value=0.02 Score=61.48 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=42.7
Q ss_pred HhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCHHHHHHhhCCChhHHH
Q 013769 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (437)
Q Consensus 54 ~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~-~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~ 124 (437)
+=+.++.++.++.......+.++|+..+|......+... .......|+--.-=.|..|.+++||+++....
T Consensus 47 ~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~ 118 (523)
T PRK10484 47 GSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRI 118 (523)
T ss_pred HHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHH
Confidence 334455788888888888888899886532222221111 11122444433333578999999999765443
No 32
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.12 E-value=0.02 Score=60.50 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=23.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 314 ~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
..+.++...+++...++.+..+.+.+++.....++..+.+
T Consensus 282 ~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 282 FVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344454455666667766666666666655555554444
No 33
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.11 E-value=0.0074 Score=59.95 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=95.9
Q ss_pred HHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHhhCCChhH
Q 013769 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPN 122 (437)
Q Consensus 44 ~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~v-TG~~l~~~ir~~~~~~~~ 122 (437)
|..+..+| .++.+++--.=++.+. =.+||+.=.|-++++.++..+.-....+++-. .-++..|.++.-.|++++
T Consensus 7 ~~~f~~ig--~~vGAGfAsGqEi~QF---F~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ 81 (349)
T COG3949 7 RWAFAFIG--TVVGAGFASGQEIMQF---FGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFA 81 (349)
T ss_pred HHHHHHHH--HhhcccccchHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHH
Confidence 33455555 3333333333344433 34689999999999998888777777777766 445667777777788777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 013769 123 FILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (437)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f 196 (437)
...=....+..+.+..-...|++..+|-.+|+|.|+++++......+.++++| .++++++...++=++..+.
T Consensus 82 ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI~P~LIi~l 153 (349)
T COG3949 82 KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR--VEGIITVNGIITPFLIIIL 153 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeHHHHHHHHH
Confidence 76544455556666666777888778888999999997766655555555554 5677776665544444443
No 34
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.07 E-value=0.02 Score=58.88 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccch
Q 013769 311 LNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGA 390 (437)
Q Consensus 311 ~~~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~ 390 (437)
.+-+++.-+..+|+++..+.++...-|++++.++-..+....+++... |..++...... .+.+..+ ... +.
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~----k~~y~~~v~~~-~l~s~~i-a~~---Gl 324 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP----KLSYKTWVIVF-TLFSFIV-ANL---GL 324 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHH-HHHHHHH-HHh---CH
Confidence 344667788999999999999999999999988655543322333222 23333222222 2223322 222 46
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCccccC
Q 013769 391 GQLIIIASMILSFELPFALVPLLKFTSSKVKMG 423 (437)
Q Consensus 391 ~~Ll~~a~v~~~i~LP~~~~~ll~l~n~k~img 423 (437)
++++.++.=+..+.-|...+.++.-.-||+...
T Consensus 325 ~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~ 357 (378)
T TIGR00796 325 TQIISISIPVLMIIYPLAIVLILLSFLRKLWDS 357 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 677777766677778888777665222444433
No 35
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.06 E-value=0.0078 Score=62.66 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHH
Q 013769 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWI 158 (437)
Q Consensus 79 ~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~ 158 (437)
+.++.+++.+++..++.-..+-.|..||.+-...-|..+|++.++..-+...+.++....-|..-.+.+.+...++|.++
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 35789999999999999999999999999988888888998888765555555555544444333333333335789999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 013769 159 GVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (437)
Q Consensus 159 ~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~ 201 (437)
++++.++.+.+...+ |||.++++-+..+..+.+.|.+..+
T Consensus 133 ~ili~g~l~~l~~if---G~r~l~~l~~~a~~~~~~lf~~l~~ 172 (442)
T COG1457 133 GILIIGVLMTLVTIF---GYRALHKLERIAVPLLLLLFLYLLA 172 (442)
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887654444444 3565555555555556666665544
No 36
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.00 E-value=0.033 Score=58.78 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 314 ~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
..++++..+|+|+..++.++.+.+.+++..+..+...+..
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~ 305 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIP 305 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999988887777665554
No 37
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.92 E-value=0.019 Score=59.82 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=93.9
Q ss_pred hhhHHhHhHhhcCCCchhHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhcCC---CHHHHHHhhCCChhHHHH
Q 013769 50 IGPGFLVSIAYIDPGNFETDLQSGAQYKYE-LLWIILVASCAALIIQSLAANLGVVTGK---HLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 50 lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~-LLW~ill~~~~~~~~q~~~~R~g~vTG~---~l~~~ir~~~~~~~~~~~ 125 (437)
.|=-++++.+.+|+|=+.- ..+-+..||- .+-.++++.++.+..+++..|.-.-+++ +..+..++++||.+++..
T Consensus 12 ~~~vl~l~gT~IGAGvL~l-P~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li 90 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFL-PVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILI 90 (415)
T ss_pred HHHHHHHHccccccchhhh-hHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHH
Confidence 3444556667888886554 4444445554 3344556677888888888888877665 688899999999999887
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh----hC---chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 013769 126 WVLAEIAIVACDIPEVIGTAFALNML----FK---IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (437)
Q Consensus 126 ~~~~~l~~~~~~~~~~~G~a~~l~ll----~g---ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~ 198 (437)
.+...+.......+-..+.+--+.-. ++ .++.+..++.......+.+.++ +...|....++..++..+++
T Consensus 91 ~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~---~~~lk~ts~l~~~~v~~~~~ 167 (415)
T COG0814 91 GLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGT---LAVLKITSLLVFGKVIYLVL 167 (415)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHH
Confidence 55544433333222222222211111 22 4555555444433334555554 56777777777777777777
Q ss_pred HHhhcCCCHHH
Q 013769 199 ELGYAKPEAKE 209 (437)
Q Consensus 199 ~~~~~~p~~~~ 209 (437)
.....-|+|..
T Consensus 168 l~~~~~~~~~~ 178 (415)
T COG0814 168 LVVYLIPHWNP 178 (415)
T ss_pred HHHHHhcccCH
Confidence 77666677654
No 38
>PRK11021 putative transporter; Provisional
Probab=97.90 E-value=0.043 Score=56.78 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=27.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 314 ~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
..+.++..+|+++..++.+..+.+.+++..+...+..+.+
T Consensus 248 ~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l 287 (410)
T PRK11021 248 LPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLV 287 (410)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889988888888777777777665555544444
No 39
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.89 E-value=0.048 Score=57.19 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHhhhhHHhHhHh-hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH
Q 013769 47 FAYIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 47 ~~~lGPG~l~a~a-~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~ 125 (437)
...++=|-++..+ +++||...... |..-=...+..-++..+....+.|++.|+-.. -+..+-.++.+||.+++..
T Consensus 19 ~~~i~ig~~IGsGif~~~g~~~~~~--G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 19 VTMLSIAGVIGAGLFVGSGSAIASA--GPAALLAYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHHHHhhhhhchHHHhhHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHhCcHHHHHH
Confidence 3445555555443 56666555432 32111122233344455666788888877652 3567788899999877654
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 013769 126 WVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (437)
Q Consensus 126 ~~~~~l~~~~~~~~~~~G~a~~l~ll~g-ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~l 188 (437)
-....++.+.....+....+.-++.+++ .|.|....+..+....+-..+.+.+.++|..+..+
T Consensus 95 gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ 158 (452)
T TIGR01773 95 GWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI 158 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 2211112111122222222222333333 45554333332222222223333367788865543
No 40
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.88 E-value=0.049 Score=56.98 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHH
Q 013769 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (437)
Q Consensus 85 ll~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~ 124 (437)
++..+..+.+-|++.++=..-| ...-.++.+||.+++.
T Consensus 54 v~~l~~al~~aEl~s~~P~~GG--~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPENGA--DYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC--ceeeHHHhcCChhHHH
Confidence 4556677788899988875433 3345677889876654
No 41
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.87 E-value=0.047 Score=56.31 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHH
Q 013769 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIV 134 (437)
Q Consensus 78 y~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~ 134 (437)
++-+..+++++++...+.-..++.|..||.+-....|..||++.+.+.-+...+..+
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~i 85 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLV 85 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 567788899999999999999999999999999999999998877665444334333
No 42
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.87 E-value=0.034 Score=57.61 Aligned_cols=146 Identities=19% Similarity=0.163 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh--hcCCCHHHhhccccccccCC---CChH-------HHHHHHhccchhhHHHHHHHH
Q 013769 179 RKLEFLIAFLVFTMAGCFFAELG--YAKPEAKEVLHGLFVPQLKG---NGAT-------GLAISLLGAMVMPHNLFLHSA 246 (437)
Q Consensus 179 ~~~E~~~~~lv~~m~l~fv~~~~--~~~p~~~~v~~g~~~P~~p~---~~~~-------~~~valiG~ti~p~~~f~~ss 246 (437)
+-+||..++++=++.++|++.++ ++.|.-.|=.+-.+.|+... .+.+ .+..+ +|.. .++-|-|+
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLS-lG~g---~mitYsSY 240 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLS-LGFG---IMITYSSY 240 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHH-HHHH---HHHHHHhh
Confidence 44999999988888888887665 33454444344445554321 0111 12222 2221 22224444
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHH
Q 013769 247 LVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWS 326 (437)
Q Consensus 247 l~~~k~~~~~~~~~~~~~~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a 326 (437)
+ +|+.|- .+++.-....|+.++...+..+=-+.. .+ +.++++...-.-..+.++-+.+ | +|+.-
T Consensus 241 L--~k~~~l----~~sa~~v~~~n~~~s~lAGl~Ifpa~f-----~~---g~~~~~GpgL~Fi~LP~if~~m-p-~G~~~ 304 (439)
T COG0733 241 L--SKKSDL----VSSALSIVLLNTLISLLAGLVIFPALF-----SF---GADASQGPGLVFIVLPAVFNQM-P-LGTLF 304 (439)
T ss_pred c--Ccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHH-----Hh---ccCCCCCCeeehhHHHHHHHhC-c-hhHHH
Confidence 3 333211 223344455666666554432211111 11 2222211100011222222233 3 78888
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 013769 327 SKLFAIALLASGQSSTIT 344 (437)
Q Consensus 327 ~~lF~igl~aa~fss~i~ 344 (437)
..+|-+.++.|++||.+.
T Consensus 305 ~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 305 GILFFLLLLFAALTSAIS 322 (439)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999999874
No 43
>TIGR00909 2A0306 amino acid transporter.
Probab=97.85 E-value=0.053 Score=56.28 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=32.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 013769 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 356 (437)
Q Consensus 314 ~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~~g~ 356 (437)
.....+...|+++..++.++...+.+++..+...+..+.+..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 266 LSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667788998888889998888888887777766555433
No 44
>PRK15049 L-asparagine permease; Provisional
Probab=97.83 E-value=0.067 Score=57.04 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred hhhhHHhHhHh-hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH-H
Q 013769 49 YIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-W 126 (437)
Q Consensus 49 ~lGPG~l~a~a-~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~-~ 126 (437)
.++=|-++..+ +++||......-.++-.+ .+..-++..+....+-|++.++=. +| +...-.++.+|+.+++.. |
T Consensus 37 ~i~~G~~IGsGiF~~~g~~~~~aGp~~il~--~li~~i~~~~v~~slaELas~~P~-aG-g~y~y~~~~~G~~~gf~~GW 112 (499)
T PRK15049 37 MIAIGGAIGTGLFLGAGARLQMAGPALALV--YLICGLFSFFILRALGELVLHRPS-SG-SFVSYAREFLGEKAAYVAGW 112 (499)
T ss_pred HHhhhccccchHHHhhHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhCcHhHHHHHH
Confidence 34444444444 466666554333223222 233334445555667788887765 33 566777888898766543 2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--h-CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 013769 127 VLAEIAIVACDIPEVIGTAFALNML--F-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (437)
Q Consensus 127 ~~~~l~~~~~~~~~~~G~a~~l~ll--~-gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv 197 (437)
.. .++-......|....+...+.. + +.|.|....+..++..++-..+.+.+.++|.++..+-.+..+.|+
T Consensus 113 ~~-~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~i 185 (499)
T PRK15049 113 MY-FINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFL 185 (499)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111222222222223322 2 356665443333322222233433477888887644333333443
No 45
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.77 E-value=0.0063 Score=63.58 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=53.8
Q ss_pred HhHhHhhcCCCchhHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHH
Q 013769 54 FLVSIAYIDPGNFETDLQSGAQYKY---ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE 130 (437)
Q Consensus 54 ~l~a~a~ig~G~i~t~~~aGA~~Gy---~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~ 130 (437)
.+.....+...++.+.... ..+|. +.+..+++++++..+.--..++.|..||.+-....|..||++.+.+.-+...
T Consensus 16 ~iW~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~ 94 (440)
T PF02133_consen 16 WIWFGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRA 94 (440)
T ss_dssp HHHCHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHH
Confidence 3445555666666666655 55664 4668888899999999999999999999999999999999877665544433
Q ss_pred HHHH
Q 013769 131 IAIV 134 (437)
Q Consensus 131 l~~~ 134 (437)
+..+
T Consensus 95 i~~i 98 (440)
T PF02133_consen 95 ISAI 98 (440)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 46
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.75 E-value=0.08 Score=55.29 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHH
Q 013769 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTG 164 (437)
Q Consensus 86 l~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~g-ip~~~~~~i~~ 164 (437)
...+..+.+-|++.|+-.. | +...-.++.+||.+++.......+........+..+.+.-++.+++ .+.+....+..
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~ 129 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFY 129 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 3345666799999998753 3 5566778899998776542222222222222222223323333444 34444333222
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHH
Q 013769 165 FSTLILLALQQYGVRKLEFLIAFL 188 (437)
Q Consensus 165 ~~~~~ll~~~~~~y~~~E~~~~~l 188 (437)
.....+-..+-+.+.++|.++.++
T Consensus 130 ~~~~~ln~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 130 IVFIGINILGVGEAAKLEFVVTAV 153 (442)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 221222223333366777766554
No 47
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.72 E-value=0.09 Score=55.32 Aligned_cols=137 Identities=12% Similarity=0.145 Sum_probs=68.2
Q ss_pred HhhhhHHhHhHh-hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHH
Q 013769 48 AYIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILW 126 (437)
Q Consensus 48 ~~lGPG~l~a~a-~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~ 126 (437)
..++=|-++..+ +++||......-.++-++| +..-++..+....+-|++.|+=. +| +..+-.++.+||..++..-
T Consensus 20 ~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~g~~~gf~~G 95 (456)
T PRK10238 20 QLIALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYWGSFAGFASG 95 (456)
T ss_pred HHHHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHcCcHHHHHHH
Confidence 335555444443 5777776665422333332 22223334445556688888775 33 5666677889987776542
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 013769 127 VLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (437)
Q Consensus 127 ~~~~l~~~~~~~~~~~G~a~~l~ll~g-ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~l 188 (437)
-...++.......+..+.+.-++..++ .|.|....+.......+-..+.+.+.++|.+...+
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~i 158 (456)
T PRK10238 96 WNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAII 158 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 222222222223333333434444443 56665544433322222233433477888866443
No 48
>PRK11017 codB cytosine permease; Provisional
Probab=97.72 E-value=0.084 Score=54.77 Aligned_cols=108 Identities=12% Similarity=0.109 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCchhH
Q 013769 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIV-ACDIPEVIGTAFALNMLFKIPVW 157 (437)
Q Consensus 79 ~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~-~~~~~~~~G~a~~l~ll~gip~~ 157 (437)
+-++.+++++++...+.-..++.|..+|.+-....|..||++...+..+...+..+ .+.+.... .+..++-++|++..
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~-~~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAM-FAIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhCCCHH
Confidence 35678888888899999999999999999999999999998777655444333333 23333333 23445556788766
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 013769 158 IGVLLTGFSTLILLALQQYGVRKLEFLIAF 187 (437)
Q Consensus 158 ~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~ 187 (437)
.+.++..++.....+++.+..+++|++...
T Consensus 122 ~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p 151 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFGISALTILSRIAVP 151 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444443333333433334455554433
No 49
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.71 E-value=0.064 Score=55.82 Aligned_cols=72 Identities=15% Similarity=0.353 Sum_probs=54.7
Q ss_pred hcCCCHHHHHHhhCC-ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhh
Q 013769 104 VTGKHLAEHCRNEYP-KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQ 175 (437)
Q Consensus 104 vTG~~l~~~ir~~~~-~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~ 175 (437)
.-+-+..|-+.+||. ++.++...+...+......++++.|++.-+.+++|+|..+++++..++.++...++.
T Consensus 101 ~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GG 173 (529)
T COG4147 101 LGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGG 173 (529)
T ss_pred cCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcc
Confidence 345567899989985 566666666666677778899999999999999999988888887766555555543
No 50
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.54 E-value=0.11 Score=54.84 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=25.2
Q ss_pred HHHHHHHhHhH-HHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 314 ASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 314 ~a~~l~~~lG~-~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
.++.++..+|. ++..++.+..+.+.+++..+...+..+.+
T Consensus 291 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 331 (482)
T TIGR00907 291 IAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMI 331 (482)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777 66666666666677776665555554443
No 51
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.49 E-value=0.18 Score=52.57 Aligned_cols=328 Identities=16% Similarity=0.152 Sum_probs=150.0
Q ss_pred HHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHhhCCChhHHHHHHHHHH
Q 013769 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILWVLAEI 131 (437)
Q Consensus 53 G~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~v-TG~~l~~~ir~~~~~~~~~~~~~~~~l 131 (437)
|+..=+-+.|+||++-=...|.+.|-+..|.++=-++-.+.+= +.+.+++. +|.+.. .+-+|-||+.+..+.....+
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP-~Lgvia~~~~~~~~~-~l~~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLP-LLGVIAVAKSGGGIE-DLASRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCHH-HHhcccCcHHHHHHHHHHHH
Confidence 5566677999999999999999999988777665554444443 44455555 444544 45556777666654433332
Q ss_pred HHH-HhhHHH--HHHHHHHHHHhhC----chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013769 132 AIV-ACDIPE--VIGTAFALNMLFK----IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAK 204 (437)
Q Consensus 132 ~~~-~~~~~~--~~G~a~~l~ll~g----ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~~ 204 (437)
+.- ...+.- ...-.++..-+++ ++.++..++...++..+....++-.|++-|+++=+..++.+..++..+ .+
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i-~~ 165 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGI-FS 165 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 211 011100 0001112222334 333333333222222222222212455555555433333222222223 23
Q ss_pred CC--HHHhhccccccccCC-----CChH-HHHH-H-HhccchhhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHH
Q 013769 205 PE--AKEVLHGLFVPQLKG-----NGAT-GLAI-S-LLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFA 274 (437)
Q Consensus 205 p~--~~~v~~g~~~P~~p~-----~~~~-~~~v-a-liG~ti~p~~~f~~ssl~~~k~~~~~~~~~~~~~~~~~~d~~~g 274 (437)
|. ..+. ++- ..+-|- +|+. .-++ + .+|.++. +..++||.+++ + +..|....-..++
T Consensus 166 p~g~~~~~-~~~-y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi--------~~i~~~g~~~~-k---~~~~~~~~ag~ia 231 (427)
T PF05525_consen 166 PIGPPQAP-SGA-YASNPFFKGFLEGYQTMDALAALAFGIIII--------NAIRQKGYKDK-K---EIKKYTIKAGLIA 231 (427)
T ss_pred CCCCcccc-chh-hhhhHHHHHHHHHHhhhhHHHHHHHHHHHH--------HHHHHhCCCCH-H---HHHHHHHHHHHHH
Confidence 32 1110 000 011110 0110 1111 1 1222211 12256666532 2 2222222222233
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 013769 275 LAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 354 (437)
Q Consensus 275 ~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~~ 354 (437)
.+.-.++-....-+||..- +.-+++. ...+-+.+.-+..+|+.+..++++..+-|+++++++-..+.+-.++
T Consensus 232 ~~lL~~IY~gL~~lGa~~~---~~~~~~~-----~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~ 303 (427)
T PF05525_consen 232 GILLALIYGGLAYLGATSS---GSFPDDI-----NGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS 303 (427)
T ss_pred HHHHHHHHHHHHHHccCCc---ccccCCC-----CHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333444321 1111111 1233456677888999999999999999999999865554433334
Q ss_pred hhcCCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHHHHHHHHHHH
Q 013769 355 GFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLK 414 (437)
Q Consensus 355 g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~LP~~~~~ll~ 414 (437)
+..+ |..++.......++ +..+. -. +..+++.++.=+..+.=|.+.+.++.
T Consensus 304 ~~~~----kisY~~~v~i~~i~-S~~ia-n~---Gl~~Ii~~s~PiL~~iYP~~IvLIll 354 (427)
T PF05525_consen 304 ELFP----KISYKVWVIIFTIF-SFIIA-NL---GLDQIIKISVPILMFIYPVAIVLILL 354 (427)
T ss_pred HHhc----ccChHHHHHHHHHH-HHHHH-Hh---CHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4433 22222222222222 23222 22 35677777766666777777666554
No 52
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.45 E-value=0.21 Score=52.51 Aligned_cols=68 Identities=6% Similarity=0.164 Sum_probs=38.2
Q ss_pred hhhHHhHhHh-hcCCCchhHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHH
Q 013769 50 IGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVA----SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (437)
Q Consensus 50 lGPG~l~a~a-~ig~G~i~t~~~aGA~~Gy~LLW~ill~----~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~ 124 (437)
++=|-++..+ +..||..... +|. +.+|..+++ .+....+.|++.|+-.. -+..+-.++.+||.+++.
T Consensus 19 i~vg~~IG~Gif~~~g~~~~~--aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~--Gg~y~y~~~~~G~~~gf~ 90 (457)
T PRK10580 19 MALGSAIGTGLFYGSADAIKM--AGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPAA--SSFSRYAQENLGPLAGYI 90 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHcCcHHHHH
Confidence 4444444333 4566654442 333 333433333 44455678888876642 355567788899987765
Q ss_pred H
Q 013769 125 L 125 (437)
Q Consensus 125 ~ 125 (437)
.
T Consensus 91 ~ 91 (457)
T PRK10580 91 T 91 (457)
T ss_pred H
Confidence 4
No 53
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.41 E-value=0.21 Score=51.56 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=28.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 315 a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
....+...|++...++.+++..+.+.+..+...+..+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l 299 (426)
T PF13520_consen 261 AVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLL 299 (426)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccccccccccccccccccccccccchhhcchhhcc
Confidence 344555556899999999999999888877766655554
No 54
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.38 E-value=0.25 Score=51.84 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=25.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 316 ~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
.+++..-++++..++.+....+.+++..+..++..+.+
T Consensus 255 ~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l 292 (446)
T PRK10197 255 SVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRML 292 (446)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35565666777777777777777777666666655554
No 55
>PRK10655 potE putrescine transporter; Provisional
Probab=97.24 E-value=0.34 Score=50.47 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 313 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 313 ~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
..++.++..+|++...+..++...+.+++..+...++.+.+
T Consensus 259 p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~ 299 (438)
T PRK10655 259 PFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVF 299 (438)
T ss_pred hHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889887777776666666666665555544444
No 56
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.24 E-value=0.37 Score=50.80 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH
Q 013769 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 86 l~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~ 125 (437)
+..+....+-|++.++=.. |-+..+-.++.+|+.+++..
T Consensus 48 ~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~gf~~ 86 (478)
T TIGR00913 48 IIYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFGFAV 86 (478)
T ss_pred HHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHHHHH
Confidence 4455556678888877643 33556677888998877654
No 57
>PRK10746 putative transport protein YifK; Provisional
Probab=97.15 E-value=0.45 Score=50.16 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC-chhHHHHHHHHHH
Q 013769 88 SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFS 166 (437)
Q Consensus 88 ~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~g-ip~~~~~~i~~~~ 166 (437)
.+....+-|++.++=. +| +..+-.++.+|+.+++..-..--+.-+.....|..+.+.-++..++ .|.+....+..+.
T Consensus 57 ~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~ 134 (461)
T PRK10746 57 FFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVAL 134 (461)
T ss_pred HHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 3444566788877753 33 5677778888887765431111111122223344434433444443 5655544333222
Q ss_pred HHHHHHHhhcchhHHHHHHHH
Q 013769 167 TLILLALQQYGVRKLEFLIAF 187 (437)
Q Consensus 167 ~~~ll~~~~~~y~~~E~~~~~ 187 (437)
..++-..+-+.+.++|.....
T Consensus 135 ~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 135 VALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 122222333337778876544
No 58
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.13 E-value=0.43 Score=49.60 Aligned_cols=277 Identities=16% Similarity=0.097 Sum_probs=138.7
Q ss_pred hHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC----C-----CHHHHHHhhCCChhHHHHHH
Q 013769 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTG----K-----HLAEHCRNEYPKVPNFILWV 127 (437)
Q Consensus 57 a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG----~-----~l~~~ir~~~~~~~~~~~~~ 127 (437)
.++-+|.||++--+.+=+-=|-.-+..+.+..++.......=+-++..=+ + ++.--+.+.++.+ |.-.+
T Consensus 73 la~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r--~l~v~ 150 (452)
T COG1115 73 LAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMR--WLAVL 150 (452)
T ss_pred HHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCc--HHHHH
Confidence 34579999998877777777777666666666665554444444444322 1 1223344444432 22222
Q ss_pred HH--HHHHHH--hhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 013769 128 LA--EIAIVA--CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA 203 (437)
Q Consensus 128 ~~--~l~~~~--~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~ 203 (437)
++ .+..+. .+..+.-.++.+++.-|++|++...++..+... +..++ |.|++-|+...+|=.|.+.|+...+..
T Consensus 151 FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~-~VI~G--Gi~rIa~v~~~vVPfMA~~Yi~~~~~I 227 (452)
T COG1115 151 FAFALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVA-LVIFG--GIKRIAKVSSKVVPFMAILYVLVALVI 227 (452)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HHHHc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222 222223345666777899997765544443322 23333 368899999998889999998755422
Q ss_pred ---C-----CCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHHH--HhhccCCCC---------hhhHHHHH
Q 013769 204 ---K-----PEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSAL--VLSRKIPRS---------VRSIKEAC 264 (437)
Q Consensus 204 ---~-----p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ssl--~~~k~~~~~---------~~~~~~~~ 264 (437)
+ |-...+.++-|.|+ ..+-|.+|.+++--...--+.. -.|.|.... ++-.|+.+
T Consensus 228 i~~n~~~iP~~i~~If~sAF~~~-------aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGl 300 (452)
T COG1115 228 IVLNISQIPAVIALIFSSAFGPK-------AAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGL 300 (452)
T ss_pred HHhhHhhhHHHHHHHHHhcCCch-------hhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhH
Confidence 1 12233333333222 2234555655443321110000 012221110 00012211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 013769 265 ---RFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSS 341 (437)
Q Consensus 265 ---~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~~~~~~~~~~~~~~~~a~~l~~~lG~~a~~lF~igl~aa~fss 341 (437)
-...+|+.+ + +-.+..+++++.. +..+...++. .+.| ++++..+|+|+.+..+++++.=+|||
T Consensus 301 v~~~gvfiDT~i---V-Ct~Ta~iIL~sg~--~~~~~~~~G~------~ltq--~A~~~~~g~~G~~fv~i~l~lFafTT 366 (452)
T COG1115 301 VQMLGVFIDTLV---V-CTATAFIILLSGA--WNSGGGLSGA------ALTQ--AAFSSHLGSWGSYFVAIALFLFAFTT 366 (452)
T ss_pred HHHhhhhhhhhH---H-hhHHHHHHHHcCC--cccCCCCchH------HHHH--HHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 012233322 2 1122222222221 0001000111 2333 57999999999999999999999999
Q ss_pred hhhhhhhhHHHHhhhcCC
Q 013769 342 TITGTYAGQYVMQGFLDL 359 (437)
Q Consensus 342 ~i~~~~a~~~~~~g~~~~ 359 (437)
.+...+.+....+=..+.
T Consensus 367 Ilg~yyyge~~~~fl~~~ 384 (452)
T COG1115 367 ILGWYYYGEKNIEFLFGS 384 (452)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 998877776555444443
No 59
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.08 E-value=0.61 Score=50.48 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=28.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 315 a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
+.+++..-.+++..++.++.+.+.+++..+..++..+.+
T Consensus 302 ~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 302 PVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555445788889999999888888877777665554
No 60
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.07 E-value=0.51 Score=49.33 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHH
Q 013769 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (437)
Q Consensus 85 ll~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~ 124 (437)
+.+.+....+-|++.++=. +| +..+-.|+.|||.+++.
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4556667788899888764 33 55667888999987753
No 61
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.86 E-value=0.85 Score=48.50 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH
Q 013769 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 86 l~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~ 125 (437)
+..+..+.+-|++.++-. +| +..+-.++.|||.+++..
T Consensus 89 ~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~~ 126 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFLR 126 (501)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHHH
Confidence 334555677788777653 22 455667888999877643
No 62
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=96.78 E-value=0.75 Score=46.76 Aligned_cols=119 Identities=22% Similarity=0.286 Sum_probs=70.1
Q ss_pred HHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhcCCCHHHHHHhhCC-Ch
Q 013769 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC-----------AALIIQSLAANLGVVTGKHLAEHCRNEYP-KV 120 (437)
Q Consensus 53 G~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~-----------~~~~~q~~~~R~g~vTG~~l~~~ir~~~~-~~ 120 (437)
+...++.|+++++.+... |+.|-|.+-|+ +++++ +.--+...+-|+.. -++.|.+|+||. +.
T Consensus 47 Amt~~aTYisaSSFigGp--gaayk~Glgwv-lLa~iqvp~~~l~lgvlgkk~~~~ar~~nA---ltI~D~l~~RY~s~f 120 (473)
T COG4145 47 AMTFTATYISASSFIGGP--GAAYKYGLGWV-LLAMIQVPTVWLALGVLGKKFAILAREYNA---LTINDLLFARYQSRF 120 (473)
T ss_pred hhHHHHHHHHHhhhcCCC--cHHHHhchHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhCC---eeHHHHHHHHhcchH
Confidence 444556677766666655 45556666673 33322 11112233333333 357889999984 44
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcc
Q 013769 121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYG 177 (437)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~ 177 (437)
..|..-+...+.-+.....+++|.|=-++...|+|-..+.++.+....+.-.+|..+
T Consensus 121 l~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGFR 177 (473)
T COG4145 121 LVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGFR 177 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhccee
Confidence 455433333344444556778888877887789998888888776655555565543
No 63
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.65 E-value=1.2 Score=47.53 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=31.1
Q ss_pred HhhhhHHHHHHHHHHH-----HHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHH
Q 013769 74 AQYKYELLWIILVASC-----AALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (437)
Q Consensus 74 A~~Gy~LLW~ill~~~-----~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~ 124 (437)
+++|+++....+++.+ ....+.|++.++.-.+| +..+-.|+.+|+++++.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 5778887644444333 45566777776541233 56677788899877664
No 64
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.62 E-value=1.1 Score=46.65 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH
Q 013769 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 85 ll~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~ 125 (437)
+...+....+.|++.|+=. +| +..+-.|| +|+.+++..
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~~ 85 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQT 85 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHHH
Confidence 3455667788999998875 44 56666677 788776543
No 65
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.39 E-value=1.6 Score=45.74 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=49.7
Q ss_pred hHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHH
Q 013769 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWV 127 (437)
Q Consensus 52 PG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~ 127 (437)
=|+..=+-+.|+||++-=...|.+-|-+..+.++--++-.+.+=.+..=--..+|.+.. .+.+|-||+.+..+..
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~-~l~~rv~~~f~~~f~~ 87 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVD-SLSTPIGKVAGVLLAT 87 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHhhhcchHHHHHHHH
Confidence 47788888999999999999999999888777665555555444443333333553444 4555677766655433
No 66
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.27 E-value=1.8 Score=45.18 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=83.7
Q ss_pred hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHhhCCChhHHHH----HHHHHHHH
Q 013769 60 YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL----WVLAEIAI 133 (437)
Q Consensus 60 ~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~v--TG~~l~~~ir~~~~~~~~~~~----~~~~~l~~ 133 (437)
.||.|=..-+.++=+.-|-+.+-+-.++-++.+++.+..+-.... +-.+..+-.+|.+|++.++.. |+.-.
T Consensus 28 aIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv--- 104 (462)
T COG1113 28 AIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWV--- 104 (462)
T ss_pred hhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHHH---
Confidence 344444444444445668888888888888888888888888777 456889999999998765432 33222
Q ss_pred HHhhHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 013769 134 VACDIPEVIGTAFALNMLF-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (437)
Q Consensus 134 ~~~~~~~~~G~a~~l~ll~-gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv 197 (437)
...++|..+.+.=++.-| ++|.|+.+++..++...+=...-+.|..+|.....+=+...++|+
T Consensus 105 -~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~I 168 (462)
T COG1113 105 -LVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFI 168 (462)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233566666666667666 589998887766543333233333367777665444333333444
No 67
>PRK10836 lysine transporter; Provisional
Probab=96.00 E-value=2.7 Score=44.63 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=24.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 315 a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
.+.+++.-++++..++.+.++.+.+++..+..++..+.+
T Consensus 285 ~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 285 TLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444566677777777777777766666665554
No 68
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.97 E-value=4.4 Score=46.83 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 013769 326 SSKLFAIALLASGQSSTITGTYAGQYVMQ 354 (437)
Q Consensus 326 a~~lF~igl~aa~fss~i~~~~a~~~~~~ 354 (437)
..++..+|.+.+.+++..+...+..+++.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~ 414 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQ 414 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998877777666654
No 69
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=95.50 E-value=4 Score=43.05 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH
Q 013769 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 78 y~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~ 125 (437)
|..+...+...+....+.|++.|+=. +| +..+-.++.+||.++|..
T Consensus 51 ~~~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~~ 96 (475)
T TIGR03428 51 WTWPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWFA 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHHH
Confidence 33444445556666788888888764 33 455666778888766553
No 70
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=95.45 E-value=3.3 Score=41.77 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHH-HH--H---HHHHhhHHHHHHHHHHHHHhhCchhHH
Q 013769 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVL-AE--I---AIVACDIPEVIGTAFALNMLFKIPVWI 158 (437)
Q Consensus 85 ll~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~-~~--l---~~~~~~~~~~~G~a~~l~ll~gip~~~ 158 (437)
+++.+..+.+-+++.|+ .|+++.|..++.+||+.++.+... .. + +....+.+++. ....+-..|.+.
T Consensus 45 ~~~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~tp~~~ 117 (359)
T TIGR00912 45 LIIIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFI----KTYLLPRTPIIV 117 (359)
T ss_pred HHHHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCHHH
Confidence 33444455555555554 478999999999999877764221 11 1 11111222221 111112356655
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 013769 159 GVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGC 195 (437)
Q Consensus 159 ~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~ 195 (437)
..++..+ +..+..+.|.|.+.|+..++..++.+.
T Consensus 118 ~~l~~l~---~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 118 IIILIII---VSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHH---HHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 4433322 222333445677777776665555554
No 71
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=95.37 E-value=4.4 Score=42.70 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=38.0
Q ss_pred hHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHH
Q 013769 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVAS-----CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (437)
Q Consensus 52 PG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~-----~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~ 124 (437)
-.++..++.++-.++.+. +++|.+.+...+++. +....+-|++.++-- + -+..+-.||.+|+.+++.
T Consensus 8 l~~~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~-GG~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 8 LAIMNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-K-GGVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-C-CCceeeHhhhcChhHHHH
Confidence 334444555555555433 456666543333332 344466777776644 2 256677888999877654
No 72
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.31 E-value=4.3 Score=42.14 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 313 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 313 ~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
...+......|.+...+..+..+.+.+++..+...+..+..
T Consensus 273 p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~ 313 (466)
T COG0531 273 PLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313 (466)
T ss_pred cHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556676777788889999999888888776666654443
No 73
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.29 E-value=0.14 Score=54.13 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 315 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 315 a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
..+.+...+++...++.++.+.+.+++...+.++..+.+
T Consensus 277 ~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l 315 (478)
T PF00324_consen 277 VIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLL 315 (478)
T ss_pred hhhhhhcccccccceecccchhhhhhhhhhhhcccceee
Confidence 445666667888899999999999988887666654433
No 74
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=92.94 E-value=15 Score=39.34 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=77.0
Q ss_pred hhhHHhHhHhhcCCCchhHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhC-CChhHHHH-H
Q 013769 50 IGPGFLVSIAYIDPGNFETD-LQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEY-PKVPNFIL-W 126 (437)
Q Consensus 50 lGPG~l~a~a~ig~G~i~t~-~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~-~~~~~~~~-~ 126 (437)
+|.|+.++.+ +-... =-+|+--+|.+.-.++.. ++.-+=||+..+= ++|. .+....|| ++-+++.+ |
T Consensus 60 IGTGLfvgsG-----~~l~~aGP~g~li~y~i~G~~vy~--vm~sLGEma~~~P-~sGs--F~~ya~rfvdpa~GFa~gW 129 (541)
T COG0833 60 IGTGLFVGSG-----KALSQAGPAGLLIAYLIIGIMVYF--VMQSLGELAVFYP-VSGS--FSTYATRFVDPAFGFALGW 129 (541)
T ss_pred cccceeeecc-----hhhhccCcHHHHHHHHHHHHHHHH--HHHHHHHHHhhcC-CCCc--hhhhhhhhcCchHHHHHHH
Confidence 6777665443 32222 245667777776666554 3456779999998 6773 23333344 33333221 1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhh--CchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 013769 127 VLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (437)
Q Consensus 127 ~~~~l~~~~~~~~~~~G~a~~l~ll~--gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~ 201 (437)
..-. .-..+.-.|+..++.-++.-+ .+|.+.|+.+..++.+++=.++-++|--.|-.+..+=+++.+.|++..+
T Consensus 130 nYw~-~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gi 205 (541)
T COG0833 130 NYWL-NWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGI 205 (541)
T ss_pred HHHH-HHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHH
Confidence 1100 111122345555666666554 2588888877666555554555556777777766555555566665544
No 75
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=92.93 E-value=4.8 Score=41.12 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=44.0
Q ss_pred HHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHhhCCChhHHHHHHH
Q 013769 71 QSGAQYKYE--LLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFILWVL 128 (437)
Q Consensus 71 ~aGA~~Gy~--LLW~ill~~~~~~~~q~~~~R~g~v--TG~~l~~~ir~~~~~~~~~~~~~~ 128 (437)
..|+.|||- ++|++ +.+++.-.+|++.+=..-+ -||++.|.++|..||+.+....++
T Consensus 75 i~aa~~GwlPa~lWI~-~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~~f 135 (376)
T PF02554_consen 75 ILAAQFGWLPALLWIV-FGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFLIF 135 (376)
T ss_pred HHHHHhcchHHHHHHH-HccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 455999997 77765 5667777788888777766 799999999999998877654433
No 76
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.17 E-value=19 Score=38.63 Aligned_cols=89 Identities=8% Similarity=0.031 Sum_probs=41.6
Q ss_pred hHHHHHHHhcc--chhhHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 013769 224 ATGLAISLLGA--MVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPE 301 (437)
Q Consensus 224 ~~~~~valiG~--ti~p~~~f~~ssl~~~k~~~~~~~~~~~~~~~~~~d~~~g~~~~~~i~~~i~i~aA~vl~~~g~~~~ 301 (437)
++.+++++... |++.|+--.|-+.+.++ .++...+. -.....++++...++++.=+..+.+ |.+
T Consensus 251 G~afil~f~~~~wt~sGyDa~~H~aEE~~n----Ask~aPrg-------Ii~s~~i~~i~gw~~~I~i~~~i~~---D~~ 316 (550)
T KOG1289|consen 251 GWAFILGFFNPAWTMSGYDAAAHMAEETKN----ASKAAPRG-------IISSIAIGFILGWIIIIGIAYTIPD---DLD 316 (550)
T ss_pred hHHHHHhhccceeEEeccCchHHHHHHhcc----hhhhccHH-------HHHHHHHHHHHHHHHHHHHHHhccc---hHH
Confidence 46677887764 57777766665532211 11112222 2223344444444444444444421 100
Q ss_pred CccccccccHHHHHHHHHHhHhHHHHH
Q 013769 302 DQASCKDLDLNKASFLLRNVLGSWSSK 328 (437)
Q Consensus 302 ~~~~~~~~~~~~~a~~l~~~lG~~a~~ 328 (437)
. ...+..-+..++.|...+|+-+..
T Consensus 317 ~--v~ns~~g~p~~~i~~~~lg~k~~v 341 (550)
T KOG1289|consen 317 A--VLNSSLGQPIVQIYYQALGKKGAV 341 (550)
T ss_pred H--HhcCCCCChHHHHHHHhcCCCceE
Confidence 0 000001234677899999986543
No 77
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.12 E-value=21 Score=37.07 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=48.4
Q ss_pred hHHhHhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHH
Q 013769 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 52 PG~l~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~ 125 (437)
-|++.=+-+.|+||++-=...|.+.|....|..+=-.+-.+-+=.+.-=-....|++..+.- ++-||+.+...
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~-~~i~~~fg~~f 82 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLA-TRIGPWFGVLF 82 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHh-hhccchHHHHH
Confidence 47777888999999999999999999987666554443333333333333344777766544 45677655543
No 78
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=90.68 E-value=26 Score=37.30 Aligned_cols=135 Identities=21% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCchhHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhH-HHHHHHHHHHHHHh
Q 013769 63 PGNFETDLQSGAQYKYE-----LLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPN-FILWVLAEIAIVAC 136 (437)
Q Consensus 63 ~G~i~t~~~aGA~~Gy~-----LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~ 136 (437)
.=++-++..++.-+-.. -+-.+++++++-.++..+.+|-|...|-+-...+|.-||-+.+ +...+=..++++..
T Consensus 54 ~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~Wy 133 (497)
T COG1953 54 VHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWY 133 (497)
T ss_pred hccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 33444444444443333 3445667778888889999999999999999999999985543 33333345666666
Q ss_pred hHHHHHHHHHHHHHhh----C-------------chh--HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 013769 137 DIPEVIGTAFALNMLF----K-------------IPV--WIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (437)
Q Consensus 137 ~~~~~~G~a~~l~ll~----g-------------ip~--~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv 197 (437)
.+....|.- +++++. | ++. +++-.+.=++...+++.+-+.-|++|..-..++-++.+.++
T Consensus 134 Gvqty~Gg~-av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~ 212 (497)
T COG1953 134 GVQTYAGGL-AVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLA 212 (497)
T ss_pred HHHHHHhHH-HHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHH
Confidence 666655432 334432 1 111 11111111122223334444467888877666665555544
Q ss_pred H
Q 013769 198 A 198 (437)
Q Consensus 198 ~ 198 (437)
+
T Consensus 213 I 213 (497)
T COG1953 213 I 213 (497)
T ss_pred H
Confidence 3
No 79
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=87.88 E-value=18 Score=38.84 Aligned_cols=58 Identities=12% Similarity=-0.043 Sum_probs=30.6
Q ss_pred HhhcCCCchhHHHHHHHhhhh-HHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHh
Q 013769 58 IAYIDPGNFETDLQSGAQYKY-ELLW-IILVASCAALIIQSLAANLGVVTGKHLAEHCRN 115 (437)
Q Consensus 58 ~a~ig~G~i~t~~~aGA~~Gy-~LLW-~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~ 115 (437)
...+|-||+---...=.++|- ..+- -++...++.++...+=.-+|-.++++..+..++
T Consensus 16 g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~ 75 (523)
T PF00209_consen 16 GYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKR 75 (523)
T ss_dssp HHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-H
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346888888888877677662 2222 222223333333333333455566777766533
No 80
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=87.19 E-value=33 Score=34.01 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHhhCCChhHHHHHHHHHH---HHHHhh---HHHHHHHHHHHHHhhCc
Q 013769 82 WIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILWVLAEI---AIVACD---IPEVIGTAFALNMLFKI 154 (437)
Q Consensus 82 W~ill~~~~~~~~q~~~~R~g~v-TG~~l~~~ir~~~~~~~~~~~~~~~~l---~~~~~~---~~~~~G~a~~l~ll~gi 154 (437)
..++++.+....+-.+..|+.-- .|+++.|..++.+||+.++.+.+...+ ...+.. .+++.. ..++-..
T Consensus 36 i~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~----~~~lp~T 111 (320)
T PF03845_consen 36 ISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIK----TYLLPET 111 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcC
Confidence 34455556666666666666654 899999999999999888764322211 111222 222221 1122246
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHhhccccccccCC
Q 013769 155 PVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA--KPEAKEVLHGLFVPQLKG 221 (437)
Q Consensus 155 p~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~--~p~~~~v~~g~~~P~~p~ 221 (437)
|.+....+..+. ..+..++|.+.+-|....+...+.+.++...... +-||.. +.|-.+.
T Consensus 112 P~~~i~~~~ll~---~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~-----l~P~~~~ 172 (320)
T PF03845_consen 112 PIWVIILLFLLV---AAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDN-----LLPVLES 172 (320)
T ss_pred CHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH-----eeCcccC
Confidence 776655444322 2333345566666654444444444444333333 445555 4565543
No 81
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=86.45 E-value=53 Score=35.66 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHhHh-HHHHH---HHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 013769 316 FLLRNVLG-SWSSK---LFAIALLASGQSSTITGTYAGQYVMQGF 356 (437)
Q Consensus 316 ~~l~~~lG-~~a~~---lF~igl~aa~fss~i~~~~a~~~~~~g~ 356 (437)
..++=..| +++++ ++.++++.+..|+..++.+++.+.+..+
T Consensus 306 spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 306 SPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred cHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 34542333 35777 9999999999999998888887666443
No 82
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=86.07 E-value=14 Score=40.03 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred HhHhhcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHH
Q 013769 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQ----SLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (437)
Q Consensus 56 ~a~a~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q----~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l 131 (437)
.-++.++.+++..-+..|++||.+..|.-+-..+.....- -.--|.++. +.-|-.++||++..+.. +.+..+
T Consensus 56 L~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~l-~~l~f~ 131 (585)
T KOG2349|consen 56 LFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRYL-ATLSFI 131 (585)
T ss_pred hhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchhh-HHHHHH
Confidence 3467889999999999999999998766554433332221 122333442 34577888998763322 111111
Q ss_pred HHHHhhH--HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHh
Q 013769 132 AIVACDI--PEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (437)
Q Consensus 132 ~~~~~~~--~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~ 174 (437)
-....-+ -.++ -+.++|..+|+..+....+..++|...-.++
T Consensus 132 l~~~~~l~v~~y~-pal~~~qvtg~~~~l~~~~~~~ic~~YT~~G 175 (585)
T KOG2349|consen 132 LMIFLYLPVDMYA-PALAINQVTGINLYLIVVILGLICVFYTALG 175 (585)
T ss_pred HHHHhheeeeEee-hHHHHHHHhccCceeehHHHHHHHHHHHHhc
Confidence 1111111 1112 3556777788776655555554444333343
No 83
>PRK15015 carbon starvation protein A; Provisional
Probab=85.03 E-value=34 Score=37.71 Aligned_cols=90 Identities=23% Similarity=0.355 Sum_probs=59.4
Q ss_pred CCCCccccCCcccccCCcc-hH-HHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHH
Q 013769 23 NAPLIKNEDADQIVVPDKT-SW-KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYE--LLWIILVASCAALIIQSLA 98 (437)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy~--LLW~ill~~~~~~~~q~~~ 98 (437)
.+|.-.-+|--|=+|.++. -| ++|.+.-|.|=++ -....++|||- +||++ +.+++.-.+|++.
T Consensus 68 ~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPiv------------GPvlAa~~GwlP~~LWIl-~G~vf~GaVhD~~ 134 (701)
T PRK15015 68 MTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLV------------GPVLAAQMGYLPGMIWLL-AGVVLAGAVQDFM 134 (701)
T ss_pred CCCceECCCCCCcCcCCccchhHHHHHHHhccCccH------------HHHHHHHHcchHHHHHHH-Hcceeechhhhhh
Confidence 4444444444444455443 33 5566555555543 23456689995 78865 5666667789988
Q ss_pred HHhhhh--cCCCHHHHHHhhCCChhHHHH
Q 013769 99 ANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (437)
Q Consensus 99 ~R~g~v--TG~~l~~~ir~~~~~~~~~~~ 125 (437)
+=..-+ -||++.|.+||+.|++.+...
T Consensus 135 ~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 135 VLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred heeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 877666 799999999999998766554
No 84
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=79.98 E-value=86 Score=33.22 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=41.6
Q ss_pred HHhhhhHHhHhHhhcCCCchhHHHHHHHhhhh-HHHHHHHHHHH----HHHHHHHHHHHhhhhcCCCHHHHHHhhCCChh
Q 013769 47 FAYIGPGFLVSIAYIDPGNFETDLQSGAQYKY-ELLWIILVASC----AALIIQSLAANLGVVTGKHLAEHCRNEYPKVP 121 (437)
Q Consensus 47 ~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy-~LLW~ill~~~----~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~ 121 (437)
++..+=..+...+.+|-+++..+.. ..|. ..+|.++.+.+ ....+-|++.++=-.+| +..+-.|+.+|+++
T Consensus 9 l~~~~l~~~~~~~vig~~~~~~~~~---~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~ 84 (496)
T PRK15238 9 LSLIGLILMIFTSVFGFANSPRAFY---LMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKF 84 (496)
T ss_pred eeHHHHHHHHHHHHHhCCchHHHHH---HcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchH
Confidence 3344444555556666666654332 2333 34455544433 34456777776543223 67778889999888
Q ss_pred HHH
Q 013769 122 NFI 124 (437)
Q Consensus 122 ~~~ 124 (437)
++.
T Consensus 85 gf~ 87 (496)
T PRK15238 85 AFI 87 (496)
T ss_pred HHH
Confidence 764
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=78.21 E-value=1.1e+02 Score=33.22 Aligned_cols=69 Identities=20% Similarity=0.343 Sum_probs=50.3
Q ss_pred HHHHHhhhhHHhHhHhhcCCCchhHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHhhCCC
Q 013769 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKY--ELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPK 119 (437)
Q Consensus 44 ~~~~~~lGPG~l~a~a~ig~G~i~t~~~aGA~~Gy--~LLW~ill~~~~~~~~q~~~~R~g~v--TG~~l~~~ir~~~~~ 119 (437)
+++...-|-|=++ -...+|+||| .+||++ +.+++.-.+|++..=..-+ -|||+.|..+|..|+
T Consensus 60 hHFaaIAGAGPiv------------GPvlAAq~G~Lp~~LWIl-~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~ 126 (575)
T COG1966 60 HHFASIAGAGPIV------------GPALAAQYGWLPAFLWIL-LGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGR 126 (575)
T ss_pred HHHHHHhccCcch------------hHHHHHHhcCcHHHHHHH-HhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhh
Confidence 5666655555443 3567899997 588864 6777777888887655544 699999999999998
Q ss_pred hhHHHH
Q 013769 120 VPNFIL 125 (437)
Q Consensus 120 ~~~~~~ 125 (437)
..+...
T Consensus 127 ~a~~~~ 132 (575)
T COG1966 127 TAKVFF 132 (575)
T ss_pred hHHHHH
Confidence 776653
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=77.44 E-value=1.1e+02 Score=32.82 Aligned_cols=80 Identities=26% Similarity=0.327 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHhhhc---CCCcchhhhHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhHH
Q 013769 329 LFAIALLASGQSSTITGTYAGQYVMQGFL---DLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFEL 405 (437)
Q Consensus 329 lF~igl~aa~fss~i~~~~a~~~~~~g~~---~~~~~~~~~~~~~~~~~iv~a~~i~~~~g~~~~~~Ll~~a~v~~~i~L 405 (437)
+..+..+...+...+|...++.+++...- +.+.+++.|-+....+..++.. +....|.+...++.+ ...+
T Consensus 393 i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~-ll~~ggl~~lq~~~i------i~~l 465 (485)
T PF02028_consen 393 ILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIV-LLLIGGLDALQSASI------IGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHH-HHHHHSSHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHH------HHHH
Confidence 33444444444555666666656654443 3334445554333444444433 334455432222222 2446
Q ss_pred HHHHHHHHHH
Q 013769 406 PFALVPLLKF 415 (437)
Q Consensus 406 P~~~~~ll~l 415 (437)
|+..+.++..
T Consensus 466 P~~~v~~~~~ 475 (485)
T PF02028_consen 466 PFSFVMLLMC 475 (485)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655443
No 87
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=72.21 E-value=1e+02 Score=30.32 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=42.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHHHHhhccCCC
Q 013769 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPR 255 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~~ 255 (437)
|||.++|.+..++.+++.+...+..+ . +-.+.++.|+.+......+.++.++..+......++....++ . +
T Consensus 73 yG~~r~E~l~~l~~~~~l~~~~~~~~--~----esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~--~ 143 (299)
T PRK09509 73 FGHGKAESLAALAQSMFISGSALFLF--L----TGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWVVRK-T--Q 143 (299)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-h--C
Confidence 67899999987766544322211111 1 222333345443323343455566655555544443332221 1 1
Q ss_pred ChhhHHHHHHHHHHHHHHH
Q 013769 256 SVRSIKEACRFYMIESGFA 274 (437)
Q Consensus 256 ~~~~~~~~~~~~~~d~~~g 274 (437)
...++...+..+.|...+
T Consensus 144 -s~~l~a~~~~~~~D~~~s 161 (299)
T PRK09509 144 -SQAVRADMLHYQSDVMMN 161 (299)
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 123444344566776655
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=66.02 E-value=1.2e+02 Score=32.08 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC----------HHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCc
Q 013769 85 LVASCAALIIQSLAANLGVVTGKH----------LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKI 154 (437)
Q Consensus 85 ll~~~~~~~~q~~~~R~g~vTG~~----------l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~gi 154 (437)
+++.++..++--.-+.+|..+... +....++.+|+...+.+-+...++++.+.++...+.+.-.+-++++
T Consensus 233 ~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~i 312 (439)
T PRK15433 233 LMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPL 312 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344444444444555555544321 2334677788888888778888899999999988888877777777
Q ss_pred hhHHHHHHHHHHHH
Q 013769 155 PVWIGVLLTGFSTL 168 (437)
Q Consensus 155 p~~~~~~i~~~~~~ 168 (437)
+-..++.+..+.++
T Consensus 313 sY~~~v~i~~l~S~ 326 (439)
T PRK15433 313 SYRTLVFILGGFSM 326 (439)
T ss_pred cHHHHHHHHHHHHH
Confidence 76666666554443
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=64.73 E-value=1.9e+02 Score=30.41 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC----------HHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC-
Q 013769 85 LVASCAALIIQSLAANLGVVTGKH----------LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK- 153 (437)
Q Consensus 85 ll~~~~~~~~q~~~~R~g~vTG~~----------l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~ll~g- 153 (437)
+++.++...+.-.-+.+|..+... +.+..++.+|+.....+-+...++|+.+.++-...++.-.+-+++
T Consensus 229 ~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k 308 (427)
T PF05525_consen 229 LIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK 308 (427)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444445555544332 234456668888888888888899999998887777777777776
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 013769 154 IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTM 192 (437)
Q Consensus 154 ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m 192 (437)
++-..++.+..+.++++ .+.| +|++++..+=++
T Consensus 309 isY~~~v~i~~i~S~~i---an~G---l~~Ii~~s~PiL 341 (427)
T PF05525_consen 309 ISYKVWVIIFTIFSFII---ANLG---LDQIIKISVPIL 341 (427)
T ss_pred cChHHHHHHHHHHHHHH---HHhC---HHHHHHHHHHHH
Confidence 77666676665544333 3333 555555443333
No 90
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=64.64 E-value=2.1e+02 Score=30.90 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHhhCch--hHHHHHHHHHHHHHHH---HHh-hcchhHHHHHHHHHH
Q 013769 145 AFALNMLFKIP--VWIGVLLTGFSTLILL---ALQ-QYGVRKLEFLIAFLV 189 (437)
Q Consensus 145 a~~l~ll~gip--~~~~~~i~~~~~~~ll---~~~-~~~y~~~E~~~~~lv 189 (437)
..+++.++|+| .+..+.+.++.+.+.. +.| ++|-|++.++...+.
T Consensus 216 ~~Gl~~l~gip~~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~~n~~la 266 (537)
T COG1292 216 TAGLSYLFGIPNSFAVQAIIIAVITALFTISVWSGLDKGIRVLSNINMVLA 266 (537)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55788899997 2322222222222222 122 345777777776543
No 91
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=59.71 E-value=1.1e+02 Score=27.00 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=29.5
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 013769 150 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (437)
Q Consensus 150 ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~ 201 (437)
-++++|..-+++-..+. ++.+..+.-..+.+|.....+..-|.+.|+....
T Consensus 28 ~ll~lPiPGsViGMlLL-~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPagV 78 (141)
T PRK04125 28 SFLPIPMPASVIGLVLL-FVLLCTKVVKLEQVESLGTALTNNIGFLFVPSGI 78 (141)
T ss_pred HHcCCCCcHHHHHHHHH-HHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 45565544333222221 2233333333678999999998889888885543
No 92
>PRK09928 choline transport protein BetT; Provisional
Probab=59.18 E-value=3e+02 Score=30.81 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHhhhhhhhhhhhhHHHHhhhcC------CCcchhhhHHHHHHHHHHH
Q 013769 336 ASGQSSTITGTYAGQYVMQGFLD------LRLKPWLRNFLTRCLAIVP 377 (437)
Q Consensus 336 aa~fss~i~~~~a~~~~~~g~~~------~~~~~~~~~~~~~~~~iv~ 377 (437)
...+...+|...++.++++.+-. .+.++|.|-+....+..++
T Consensus 417 il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la 464 (679)
T PRK09928 417 ITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLT 464 (679)
T ss_pred HHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 33344556666777777755422 2344565544434444443
No 93
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=58.86 E-value=1.3e+02 Score=29.96 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=48.5
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHHHHhhccCC
Q 013769 175 QYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP 254 (437)
Q Consensus 175 ~~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ssl~~~k~~~ 254 (437)
+||+.|.|.+..++++++.+..-+.. .. .+ ....+.|+.+........+++++..++-+...+.-...+ +.+
T Consensus 74 pyGh~k~E~l~sl~~~~~i~~~g~~i--~~---~a-~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~k--k~~ 145 (304)
T COG0053 74 PYGHGKAETLASLIVSILIFAAGFEI--LL---EA-IKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGK--KTN 145 (304)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH--HH---HH-HHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH--HhC
Confidence 37899999998877665533222222 11 12 222244665554556667777777777666665544332 211
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q 013769 255 RSVRSIKEACRFYMIESGFALA 276 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~d~~~g~~ 276 (437)
+ .-++......|-|...+..
T Consensus 146 -S-~aL~Ada~h~~sD~~ts~~ 165 (304)
T COG0053 146 -S-QALIADALHHRSDVLTSLA 165 (304)
T ss_pred -C-HHHHHHhHHHHHHHHHHHH
Confidence 1 1123223345667655443
No 94
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=56.46 E-value=1.9e+02 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.4
Q ss_pred cchhHHHHHHHHHHHHH
Q 013769 176 YGVRKLEFLIAFLVFTM 192 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m 192 (437)
|||.++|.+..++.+++
T Consensus 52 yG~~r~E~l~~l~~~~~ 68 (268)
T TIGR01297 52 FGHGRAEILAALLNGLF 68 (268)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 78999999887766553
No 95
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=55.92 E-value=1.3e+02 Score=30.55 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=54.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHHHHcC-ccchHHHH
Q 013769 316 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGG-SAGAGQLI 394 (437)
Q Consensus 316 ~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~iv~a~~i~~~~g-~~~~~~Ll 394 (437)
+.++.++|++...++=+.++...|+++.+....++..+|+.+|. +.|.-..+ ++....+..+.+ .+...
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--P~wiGali-----~i~~v~i~lfl~~vegi~--- 139 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--PYWIGALI-----IILLVLILLFLGRVEGII--- 139 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--cHHHHHHH-----HHHHHHHHHHHhccccee---
Confidence 56888999999999999999999999886555555677777664 44433221 111122223333 22222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 013769 395 IIASMILSFELPFALVPLLKFT 416 (437)
Q Consensus 395 ~~a~v~~~i~LP~~~~~ll~l~ 416 (437)
-+|++..|+..+.++..+
T Consensus 140 ----tvn~iI~P~LIi~l~~v~ 157 (349)
T COG3949 140 ----TVNGIITPFLIIILVLVT 157 (349)
T ss_pred ----eeheeHHHHHHHHHHHHH
Confidence 245678898888766543
No 96
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=54.42 E-value=2.9e+02 Score=29.17 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=77.3
Q ss_pred CchhHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHH----hhhhcC---CCHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 013769 64 GNFETDLQSGAQYKYEL-LWIILVASCAALIIQSLAAN----LGVVTG---KHLAEHCRNEYPKVPNFILWVLAEIAIVA 135 (437)
Q Consensus 64 G~i~t~~~aGA~~Gy~L-LW~ill~~~~~~~~q~~~~R----~g~vTG---~~l~~~ir~~~~~~~~~~~~~~~~l~~~~ 135 (437)
+.+.+...+=++-||-- +-++++..++.+.--.+..| .-.+.| ++-.|+.++.||++..+.......+-.+.
T Consensus 54 ~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg 133 (437)
T KOG1303|consen 54 AGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKGRLLVSVLQYLELFG 133 (437)
T ss_pred hhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCceEeeeHHHHHHHHH
Confidence 34455556666666655 33333333333322111111 111222 33667777888866654444433333333
Q ss_pred hhHHHHHHHHHHHHHhh-----Cc-h--hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 013769 136 CDIPEVIGTAFALNMLF-----KI-P--VWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 207 (437)
Q Consensus 136 ~~~~~~~G~a~~l~ll~-----gi-p--~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~ 207 (437)
..+.-++-.+..++.++ +. + .....++.+++++.+.++.+. +.+ +.......+|.+++...++....-.
T Consensus 134 ~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~--~~l-~~~S~~~avmS~~~a~~~~~~g~~~ 210 (437)
T KOG1303|consen 134 ICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF--HSL-SYLSLVGAVMSTLYAVILIVLGIAD 210 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc--chh-HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333333333 12 1 123344455555555665442 223 2334445556666665555432211
Q ss_pred H----HhhccccccccCCCChHHHHHHHhccchhhHHHHH
Q 013769 208 K----EVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFL 243 (437)
Q Consensus 208 ~----~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~ 243 (437)
+ +...+ .++.-..+....++|++......|+.+.
T Consensus 211 g~~~~~~~~~--~~~~~~~~~~f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 211 GVGFCAPSGG--YLDLGTIPTVFTALGIIAFAYGGHAVLP 248 (437)
T ss_pred ccccCCcccC--cccCCCCcchhhhhhheeeeecCCeeee
Confidence 1 11111 1111111111467888887777777664
No 97
>PRK03557 zinc transporter ZitB; Provisional
Probab=52.16 E-value=2.5e+02 Score=27.89 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.4
Q ss_pred cchhHHHHHHHHHHHHH
Q 013769 176 YGVRKLEFLIAFLVFTM 192 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m 192 (437)
|||.++|.+..++.+++
T Consensus 81 yG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIA 97 (312)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 78999999887766554
No 98
>PRK09950 putative transporter; Provisional
Probab=50.34 E-value=3.6e+02 Score=29.08 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=8.5
Q ss_pred HHHHHHhhCchh
Q 013769 145 AFALNMLFKIPV 156 (437)
Q Consensus 145 a~~l~ll~gip~ 156 (437)
..+++.++|+|.
T Consensus 213 ~~gl~~l~Gi~~ 224 (506)
T PRK09950 213 TRGLSALTGLPN 224 (506)
T ss_pred HHHHHHHcCCCC
Confidence 456777889863
No 99
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=44.05 E-value=94 Score=29.95 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHHHH
Q 013769 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSA 246 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ss 246 (437)
|||.++|.+..+..++..+......+. +-.+.++.|+.+........+++++..+.-...+++..
T Consensus 61 fG~~r~e~l~~~~~~~~l~~~~~~~~~------~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~ 125 (284)
T PF01545_consen 61 FGYGRLEPLAALIVSILLIFLGLFLIV------ESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRR 125 (284)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHH------HHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHhhhhhhhhHhhhHHHHHH------HHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhh
Confidence 578999999877655443322222222 22233334433222222223356665555555555433
No 100
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=38.88 E-value=64 Score=22.96 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCCh
Q 013769 80 LLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120 (437)
Q Consensus 80 LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~ 120 (437)
.+..+.+.+..-+..+. |.+.-.|+++.|+++++|.++
T Consensus 9 P~~av~iG~~ayyl~e~---R~~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYEN---REGRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred hHHHHHHHHHHHHHHHH---hccCCCCCcHHHHHHHHhhcc
Confidence 34455555554444444 999999999999999998653
No 101
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=37.97 E-value=4.2e+02 Score=26.40 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHH
Q 013769 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLF 242 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f 242 (437)
|||+|+|-+....-+++.++ +..++. | |..+-++.|...+. ...+.+|++|-.+--...+
T Consensus 84 fGy~R~eiLaa~~nav~Li~--~s~~I~---~-EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ 143 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIV--VSLLIL---W-EAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSAL 143 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHH--HHHHHH---H-HHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHH
Confidence 68999998776543333221 112221 1 44555566765443 4456677777655444333
No 102
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=37.25 E-value=59 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 013769 178 VRKLEFLIAFLVFTMAGCFFAELGY 202 (437)
Q Consensus 178 y~~~E~~~~~lv~~m~l~fv~~~~~ 202 (437)
-..+||+..+++.+|.+..+...+.
T Consensus 6 KS~fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 6 KSTFEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998887766543
No 103
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=33.85 E-value=76 Score=29.66 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=32.2
Q ss_pred hcCCCchhHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Q 013769 60 YIDPGNFETDLQSGAQYKY-----ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHC 113 (437)
Q Consensus 60 ~ig~G~i~t~~~aGA~~Gy-----~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~i 113 (437)
..|||.+++....+++++. ..+-.+++.+.+.|.+...+.++.-.-|++-.+.+
T Consensus 121 laGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi 179 (203)
T PF01914_consen 121 LAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVI 179 (203)
T ss_pred ccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence 3577777788888888773 23344445555555666666655555555544443
No 104
>PRK01658 holin-like protein; Validated
Probab=28.47 E-value=3.8e+02 Score=22.95 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 013769 149 NMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (437)
Q Consensus 149 ~ll~gip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~fv~~~~ 201 (437)
+-++++|..-.++-..+ -++.+..+.-..+++|+....+..-|.+-|+....
T Consensus 24 ~~~l~lpiPGsViGmlL-L~~~L~~~~ik~~~v~~~a~~Ll~~m~llFVPa~V 75 (122)
T PRK01658 24 QEQLHLPIPGSIIGIFL-LLLLLSFKILKLKWIELGAETLLAELPLFFIPSAV 75 (122)
T ss_pred HHHcCCCCCHHHHHHHH-HHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566654433322221 12233343334789999999998889888886544
No 105
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=28.03 E-value=7.3e+02 Score=26.10 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCC----------HHHHHHhhCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 013769 81 LWIILVASCAALIIQSLAANLGVVTGKH----------LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNM 150 (437)
Q Consensus 81 LW~ill~~~~~~~~q~~~~R~g~vTG~~----------l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~a~~l~l 150 (437)
.+.=+++.+....+-....|+|..+++- |.+..++.+|+...+.+-+...++|+.+.++-+..++.=.+-
T Consensus 227 ~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~ 306 (431)
T COG1114 227 IKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSK 306 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556667777554431 233344556777777777777888888888877767766666
Q ss_pred hhC-chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 013769 151 LFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLV 189 (437)
Q Consensus 151 l~g-ip~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~lv 189 (437)
+++ ++-..++.+..+.++++ .+.| +|++++.-+
T Consensus 307 ~~p~~SY~~~v~if~i~sflv---an~G---L~~Ii~isv 340 (431)
T COG1114 307 LVPKLSYKTWVIIFTLISFLV---ANLG---LEQIIKISV 340 (431)
T ss_pred hcccccHHHHHHHHHHHHHHH---HHhh---HHHHHHHHH
Confidence 665 66666666665544322 2323 566655443
Done!