Query 013769
Match_columns 437
No_of_seqs 145 out of 1217
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 98.8 1.4E-05 4.7E-10 83.7 35.2 133 54-188 34-174 (501)
2 3l1l_A Arginine/agmatine antip 98.5 0.00019 6.5E-09 72.9 31.4 40 314-353 262-301 (445)
3 3dh4_A Sodium/glucose cotransp 98.3 0.00029 1E-08 74.0 26.2 123 49-174 21-151 (530)
4 3gia_A Uncharacterized protein 98.2 0.0011 3.9E-08 67.1 29.3 41 313-353 259-299 (444)
5 2xq2_A Sodium/glucose cotransp 98.2 0.00088 3E-08 71.3 29.1 127 58-187 62-197 (593)
6 4djk_A Probable glutamate/gamm 97.9 0.02 6.8E-07 58.9 31.7 30 324-353 287-316 (511)
7 2a65_A Leutaa, Na(+):neurotran 88.9 24 0.0008 36.5 28.8 62 58-119 20-87 (519)
8 3h90_A Ferrous-iron efflux pum 57.1 27 0.00091 32.7 7.7 63 176-244 66-128 (283)
9 3j1z_P YIIP, cation efflux fam 43.0 50 0.0017 31.3 7.1 17 176-192 75-91 (306)
10 2jln_A MHP1; hydantoin, transp 10.7 1.1E+03 0.039 23.2 12.4 82 105-188 279-366 (501)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.84 E-value=1.4e-05 Score=83.65 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=82.2
Q ss_pred HhHhHhhcCCCchhHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHH
Q 013769 54 FLVSIAYIDPGNFETDLQSGAQYKY---ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE 130 (437)
Q Consensus 54 ~l~a~a~ig~G~i~t~~~aGA~~Gy---~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~ 130 (437)
.+.....+..+++.......+ |. +.++.+++++++...+.-..++.|..+|.+-.+..|..||++.+.+.-+...
T Consensus 34 ~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~ 111 (501)
T 2jln_A 34 AIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKA 111 (501)
T ss_dssp HHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHH
Confidence 455555666666655544443 43 3456777888888888888999999999999999999999988776544444
Q ss_pred HHHHHhhHHHHHHHHHHHHHhh----Cch-hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 013769 131 IAIVACDIPEVIGTAFALNMLF----KIP-VWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL 188 (437)
Q Consensus 131 l~~~~~~~~~~~G~a~~l~ll~----gip-~~~~~~i~~~~~~~ll~~~~~~y~~~E~~~~~l 188 (437)
+..+....-+....+.+++.++ |.+ .+++.++..++..++.+.+-+..+++|++...+
T Consensus 112 i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 112 LLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPV 174 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4444433334344444444443 776 566666665544444433332244555554433
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.51 E-value=0.00019 Score=72.85 Aligned_cols=40 Identities=15% Similarity=-0.040 Sum_probs=32.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 314 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 314 ~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
..+..+...|++...++.++.+.+.+++..+..++..+.+
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 301 (445)
T 3l1l_A 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999998887777665544
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.26 E-value=0.00029 Score=74.02 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=73.2
Q ss_pred hhhhHHh---HhHhhcCCCchhHHHHHHHhhhhHHH---HHHHHHH-HHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChh
Q 013769 49 YIGPGFL---VSIAYIDPGNFETDLQSGAQYKYELL---WIILVAS-CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVP 121 (437)
Q Consensus 49 ~lGPG~l---~a~a~ig~G~i~t~~~aGA~~Gy~LL---W~ill~~-~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~ 121 (437)
.+||..+ +.+++++..++...+..+.++|+.-. |...++. ++.+++-...-|.+ -.+..|.+++||+++.
T Consensus 21 ~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~---~~T~~e~l~~Rfg~~~ 97 (530)
T 3dh4_A 21 SLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---IYTIPEFVEKRFNKKL 97 (530)
T ss_dssp CCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTT---CCSHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHcCcHH
Confidence 3566544 35668999999999999999998754 3322222 22222222233433 3789999999999876
Q ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHh
Q 013769 122 NFILWVLAEIAIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (437)
Q Consensus 122 ~~~~~~~~~l~~~~-~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~ 174 (437)
....-+...+..+. ....++.+.+..++.++|+|.+.++++.++++.+...++
T Consensus 98 ~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~G 151 (530)
T 3dh4_A 98 KTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 151 (530)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 54432222211111 223344556677888999999988887776544333343
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.24 E-value=0.0011 Score=67.09 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 313 KASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 313 ~~a~~l~~~lG~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
...+..++..|++...++.++.+.+.+++..+..++..+.+
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999888887776655444
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.22 E-value=0.00088 Score=71.32 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=73.6
Q ss_pred HhhcCCCchhHHHHHHHhhhhHHH---HHHHHHH-HHHHHHHHHHHHhhhhcCCCHHHHHHhhCCChhHHHHHHHHHHHH
Q 013769 58 IAYIDPGNFETDLQSGAQYKYELL---WIILVAS-CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133 (437)
Q Consensus 58 ~a~ig~G~i~t~~~aGA~~Gy~LL---W~ill~~-~~~~~~q~~~~R~g~vTG~~l~~~ir~~~~~~~~~~~~~~~~l~~ 133 (437)
+++++..+.......+.++|+... |...++. ++.+++-...-|.+ -.+..|.+++|||+..+...-+...+..
T Consensus 62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~---~~T~~e~l~~Rfg~~~~~~~ai~~l~~~ 138 (593)
T 2xq2_A 62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---IYTIPEFVEKRFNKKLKTILAVFWISLY 138 (593)
T ss_dssp GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTT---CCSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCcHHHHHHHccCchHHHHHHHHHHHH
Confidence 456788888888888889998744 3222222 22222222233443 4679999999999876544322222222
Q ss_pred H-HhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHH
Q 013769 134 V-ACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYG----VRKLEFLIAF 187 (437)
Q Consensus 134 ~-~~~~~~~~G~a~~l~ll~gip~~~~~~i~~~~~~~ll~~~~~~----y~~~E~~~~~ 187 (437)
+ .....++.+.+..++.++|+|.+.++++.++++.+...++... =+.++.++++
T Consensus 139 ~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml 197 (593)
T 2xq2_A 139 IFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 197 (593)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 2 2223445566777888999999888877766544444444321 2455555443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.92 E-value=0.02 Score=58.93 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 013769 324 SWSSKLFAIALLASGQSSTITGTYAGQYVM 353 (437)
Q Consensus 324 ~~a~~lF~igl~aa~fss~i~~~~a~~~~~ 353 (437)
+|...++.++.+.+.+++..+...+..+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGM 316 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888887766655554444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=88.90 E-value=24 Score=36.55 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=40.4
Q ss_pred HhhcCCCchhHHHHHHHhhhhH-H----HHHHHHHHHHHHHHHHHHHHhhh-hcCCCHHHHHHhhCCC
Q 013769 58 IAYIDPGNFETDLQSGAQYKYE-L----LWIILVASCAALIIQSLAANLGV-VTGKHLAEHCRNEYPK 119 (437)
Q Consensus 58 ~a~ig~G~i~t~~~aGA~~Gy~-L----LW~ill~~~~~~~~q~~~~R~g~-vTG~~l~~~ir~~~~~ 119 (437)
...+|-||+=--...=.++|=. . +-.+++..+.........+|++- .++++..+..|+--++
T Consensus 20 G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~ 87 (519)
T 2a65_A 20 GNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87 (519)
T ss_dssp HHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCS
T ss_pred HHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCC
Confidence 3479999997776666666533 1 22233334445566667778777 6899999988776544
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=57.09 E-value=27 Score=32.71 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhccchhhHHHHHH
Q 013769 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLH 244 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m~l~fv~~~~~~~p~~~~v~~g~~~P~~p~~~~~~~~valiG~ti~p~~~f~~ 244 (437)
|||.++|.+..++.+++.+.... ... .|-.+.++.|+.+......+.++.+|..+.....++.
T Consensus 66 yG~~r~E~l~~l~~~~~l~~~~~--~i~----~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~ 128 (283)
T 3h90_A 66 FGHGKAESLAALAQSMFISGSAL--FLF----LTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQ 128 (283)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHH--HHH----HHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 67999999887766654332222 211 1333343445544322223345555555555544443
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=42.97 E-value=50 Score=31.33 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=13.0
Q ss_pred cchhHHHHHHHHHHHHH
Q 013769 176 YGVRKLEFLIAFLVFTM 192 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~m 192 (437)
|||.|.|.+..++.+++
T Consensus 75 yG~~R~E~l~al~~~~~ 91 (306)
T 3j1z_P 75 YGHGKAEPLAALAQSAF 91 (306)
T ss_dssp SCCTTHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHH
Confidence 68999999887665544
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=10.68 E-value=1.1e+03 Score=23.24 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=48.4
Q ss_pred cCCCHHHHHHhhC-CChh-HHHHH-HHHHHHHHHhhH-HHHHHHHHHHHHhhC--chhHHHHHHHHHHHHHHHHHhhcch
Q 013769 105 TGKHLAEHCRNEY-PKVP-NFILW-VLAEIAIVACDI-PEVIGTAFALNMLFK--IPVWIGVLLTGFSTLILLALQQYGV 178 (437)
Q Consensus 105 TG~~l~~~ir~~~-~~~~-~~~~~-~~~~l~~~~~~~-~~~~G~a~~l~ll~g--ip~~~~~~i~~~~~~~ll~~~~~~y 178 (437)
...+..+.+.+.+ ++.+ ..+.. +...++.+.+++ +++...+..+..+++ ++...+.++.++++.++.... .+
T Consensus 279 ~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~~~~~~i~~vi~~~i~~~~--~~ 356 (501)
T 2jln_A 279 GEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQ--FA 356 (501)
T ss_dssp SCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHTCGGG--TH
T ss_pred cccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHH--hH
Confidence 4467777776644 3433 45555 556667777776 477777777766665 366666666555444332222 24
Q ss_pred hHHHHHHHHH
Q 013769 179 RKLEFLIAFL 188 (437)
Q Consensus 179 ~~~E~~~~~l 188 (437)
+.+|.++..+
T Consensus 357 ~~f~~FL~~l 366 (501)
T 2jln_A 357 GVLNTFLNLL 366 (501)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677776554
Done!