Query 013769
Match_columns 437
No_of_seqs 145 out of 1217
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 16:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013769.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013769hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 52.2 94 0.0069 29.0 26.3 59 59-117 17-80 (509)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 11.3 1.1E+02 0.0083 17.5 3.0 13 154-166 2-14 (34)
3 d2yvxa3 f.57.1.1 (A:276-448) M 10.0 3.3E+02 0.024 21.3 7.0 41 243-283 57-97 (173)
4 d1tdja2 d.58.18.2 (A:336-423) 7.5 57 0.0042 23.3 0.8 18 35-52 9-26 (88)
5 d1tdja3 d.58.18.2 (A:424-514) 7.4 75 0.0054 22.8 1.4 21 34-54 15-35 (91)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 4.9 9.3E+02 0.067 21.0 13.1 45 312-356 136-188 (444)
7 d2bs2c1 f.21.2.1 (C:1-254) Fum 4.9 7.8E+02 0.057 20.0 7.9 57 60-117 153-209 (254)
8 d2qfia2 f.59.1.1 (A:5-208) Fer 3.0 19 0.0014 29.8 -5.7 16 176-191 69-84 (204)
9 d2hkua2 a.121.1.1 (A:88-208) P 2.7 1E+02 0.0074 22.9 -0.9 19 64-82 85-103 (121)
10 d1fp1d1 a.4.5.29 (D:19-128) Ch 2.2 1.9E+02 0.014 21.2 0.0 16 36-51 60-75 (110)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=52.17 E-value=94 Score=29.03 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=32.1
Q ss_pred hhcCCCchhHHHHHHHhh-hhH----HHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhC
Q 013769 59 AYIDPGNFETDLQSGAQY-KYE----LLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEY 117 (437)
Q Consensus 59 a~ig~G~i~t~~~aGA~~-Gy~----LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~ 117 (437)
..+|.||+=--...=.++ |-. -+-.+.+..+....++...+|++-....+..+.+.++.
T Consensus 17 ~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~ 80 (509)
T d2a65a1 17 NAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL 80 (509)
T ss_dssp HHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred HHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence 368888886544442222 322 22333344455556677777876655555555554443
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.28 E-value=1.1e+02 Score=17.51 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=6.6
Q ss_pred chhHHHHHHHHHH
Q 013769 154 IPVWIGVLLTGFS 166 (437)
Q Consensus 154 ip~~~~~~i~~~~ 166 (437)
+|+|+...+.++.
T Consensus 2 iPLWlv~tv~G~~ 14 (34)
T d2axtj1 2 IPLWIVATVAGMG 14 (34)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcEEEeeehhhhh
Confidence 4666554444433
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=10.04 E-value=3.3e+02 Score=21.34 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013769 243 LHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINV 283 (437)
Q Consensus 243 ~~ssl~~~k~~~~~~~~~~~~~~~~~~d~~~g~~~~~~i~~ 283 (437)
.|++...-|+...++.+.++..|..+.|...|...+.++..
T Consensus 57 ~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 57 NQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 46665544443221111223344555677777766555543
No 4
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.50 E-value=57 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=12.5
Q ss_pred cccCCcchHHHHHHhhhh
Q 013769 35 IVVPDKTSWKNLFAYIGP 52 (437)
Q Consensus 35 ~~~~~~~~~~~~~~~lGP 52 (437)
..|++|..+++++..+||
T Consensus 9 ~iPErpGaf~~F~~~lg~ 26 (88)
T d1tdja2 9 TIPEEKGSFLKFCQLLGG 26 (88)
T ss_dssp ECCBSSSCSHHHHHTTSS
T ss_pred EcCCCccHHHHHHHhcCc
Confidence 356677777777777776
No 5
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.36 E-value=75 Score=22.77 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHhhhhHH
Q 013769 34 QIVVPDKTSWKNLFAYIGPGF 54 (437)
Q Consensus 34 ~~~~~~~~~~~~~~~~lGPG~ 54 (437)
-..|++|..+++++..+||-+
T Consensus 15 v~iPErpGal~~Fl~~l~~~~ 35 (91)
T d1tdja3 15 FEFPESPGALLRFLNTLGTYW 35 (91)
T ss_dssp EECCCCTTHHHHHHHHHCSCC
T ss_pred EECCCCccHHHHHHHHhCCCC
Confidence 357889999999999999975
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=9.3e+02 Score=20.97 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHhHH-------HHHHHHHHHHHHhhhhhhhhhhhhHH-HHhhh
Q 013769 312 NKASFLLRNVLGSW-------SSKLFAIALLASGQSSTITGTYAGQY-VMQGF 356 (437)
Q Consensus 312 ~~~a~~l~~~lG~~-------a~~lF~igl~aa~fss~i~~~~a~~~-~~~g~ 356 (437)
.|++..+...++++ -+-.+..+--+|++++...+..++.. .+|..
T Consensus 136 v~iga~i~~~l~~~~~~~~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l 188 (444)
T d1otsa_ 136 VQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEM 188 (444)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHH
Confidence 35566666666654 22355666678888888877887764 34544
No 7
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=4.88 E-value=7.8e+02 Score=20.02 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=39.5
Q ss_pred hcCCCchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHhhC
Q 013769 60 YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEY 117 (437)
Q Consensus 60 ~ig~G~i~t~~~aGA~~Gy~LLW~ill~~~~~~~~q~~~~R~g~vTG~~l~~~ir~~~ 117 (437)
.+|+.......+.+-...+.+++++.+..=...=+..++.++|..++++- +..|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~fY~l~l~av~lH~~~Gl~s~~~~wG~~~~~~~-~~~R~~~ 209 (254)
T d2bs2c1 153 TIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDGETP-DKTRANL 209 (254)
T ss_dssp GCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCH-HHHHHHH
T ss_pred CCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCcch-HhHHHHH
Confidence 45666666666666566666777777776677788899999999888883 3445443
No 8
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=19 Score=29.77 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=11.6
Q ss_pred cchhHHHHHHHHHHHH
Q 013769 176 YGVRKLEFLIAFLVFT 191 (437)
Q Consensus 176 ~~y~~~E~~~~~lv~~ 191 (437)
|||.++|.+..++.++
T Consensus 69 yG~~r~E~l~~l~~~~ 84 (204)
T d2qfia2 69 FGHGKAESLAALAQSM 84 (204)
T ss_dssp CSCCTHHHHHHHTTTT
T ss_pred cchhHHHHHHHHHHHH
Confidence 5688999988765443
No 9
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=2.74 E-value=1e+02 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.8
Q ss_pred CchhHHHHHHHhhhhHHHH
Q 013769 64 GNFETDLQSGAQYKYELLW 82 (437)
Q Consensus 64 G~i~t~~~aGA~~Gy~LLW 82 (437)
|-+.+-...|..|||+|==
T Consensus 85 G~Vlq~~a~g~sfgysle~ 103 (121)
T d2hkua2 85 GLVIQKTATGESFGYSLEE 103 (121)
T ss_dssp HHHHHHHHTTSCTTCSHHH
T ss_pred HHHHHhhhccccccccHHH
Confidence 3467788889999999853
No 10
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=2.23 E-value=1.9e+02 Score=21.19 Aligned_cols=16 Identities=0% Similarity=-0.006 Sum_probs=10.6
Q ss_pred ccCCcchHHHHHHhhh
Q 013769 36 VVPDKTSWKNLFAYIG 51 (437)
Q Consensus 36 ~~~~~~~~~~~~~~lG 51 (437)
-++.+..+.|.+|++.
T Consensus 60 ~p~~~~~L~RiLRlLa 75 (110)
T d1fp1d1 60 HSDLPNRLDRMLRLLA 75 (110)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 3444567888888764
Done!