BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013771
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 229/427 (53%), Gaps = 24/427 (5%)
Query: 4 ALEVEILARETIKPSSPTPHNLRNFKLSLLDQIMPVEYTAAILFYSNN-GHHADGAEMSQ 62
A ++E ++ E I PSSPTP +L+ +K+S LDQ++ + ILFY N + D A+ SQ
Sbjct: 2 APQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQ 61
Query: 63 RLKAALPETLKNFYPFAGIIKDNVLVECNDNGAVFVEARANYPLSEVLQQ-HDHKLLREF 121
LK +L + L +FYP AG I N V+CND+G FVEAR LS+ +Q + + L ++
Sbjct: 62 HLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY 121
Query: 122 LPIEIESTKAGSGPL-------LLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAKSWAA 174
LP S G + L +++ F+CGG A+G LSHKIAD + + +W A
Sbjct: 122 LP----SAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
Query: 175 TVLDPGNKAKVNTPEYVIAASLFPPDDSLEPHADVTGQNYITKRFVFHASKIAQLKAKVT 234
T + ++ P + +AA FPP D+ V +N + KRFVF KI L+A+ +
Sbjct: 178 TC---RGETEIVLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQAS 234
Query: 235 SASVPKP-TRVEAIVALIWKSTITASRSIRGFPRVSLTAHSMNLRRMVSPPLPDNCVGNF 293
SAS K +RV+ +VA IWK I +R+ G + ++NLR ++PPLP +GN
Sbjct: 235 SASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNI 294
Query: 294 VG-DFPAKATQREIELQDLVHQLRKGKDEFCKNGMQNILEKKSSLMHGVEGDAVDFYMYS 352
F A + + + DL+ LR ++ + +L+ + L E + + ++
Sbjct: 295 ATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLY---ELEPQELLSFT 351
Query: 353 DLSRLPMYDTDFGLGKPVWVTIPNY-MHNMIMLLSTRNGEGIEALVSLSEEDMALFERDE 411
RL YD DFG GKP+ + N +L+ TR+G+G+EA + ++E++MA+
Sbjct: 352 SWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAMLPV-- 409
Query: 412 ELLAFAD 418
ELL+ D
Sbjct: 410 ELLSLVD 416
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/441 (24%), Positives = 180/441 (40%), Gaps = 48/441 (10%)
Query: 4 ALEVEILARETIKPSSPTPHNLRNFKLSLLDQIMPVEYTAAILFYSNNGHHADGAEMSQR 63
A+++E+ ++P+ TP RN S +D ++P +T ++ FY G + ++
Sbjct: 2 AMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTG--SSNFFDAKV 57
Query: 64 LKAALPETLKNFYPFAGIIKDN----VLVECNDNGAVFVEARANYPLSEVLQQHDHKLLR 119
LK AL L FYP AG +K + + +ECN G +FVEA ++ + + LR
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 117
Query: 120 EFLPIEIESTKAGSGPLLLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAKSWAATVLDP 179
+P S S LL+ QVT FKCGGV++G + H ADG + SW+ D
Sbjct: 118 RLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWS----DM 173
Query: 180 GNKAKVNTPEYVIAASLF---PPDDSLE-------PHADVTGQNYITKR--------FVF 221
V P ++ L PP + P V+ Q + F
Sbjct: 174 ARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKL 233
Query: 222 HASKIAQLKAKVT-SASVPKPTRVEAIVALIWKSTITASRSIRGFPRVSLTAH--SMNLR 278
+I+ LKAK + + E + +W+ A RG T + + R
Sbjct: 234 TREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA----RGLEVDQGTKLYIATDGR 289
Query: 279 RMVSPPLPDNCVGNFVGDFPAKATQREIELQDLVHQLRKGKDEFCK------NGMQNILE 332
+ P LP GN + A ++E + + + K D + + LE
Sbjct: 290 ARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 349
Query: 333 KK---SSLMHGVEGDAVDFYMYSDLSRLPMYDTDFGLGKPVWVTIPNYMHNMI--MLLST 387
+ +L+ G + RLP++D DFG G+P+++ + + +L S
Sbjct: 350 LQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSP 409
Query: 388 RNGEGIEALVSLSEEDMALFE 408
N + +SL E M LF+
Sbjct: 410 TNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 182/442 (41%), Gaps = 50/442 (11%)
Query: 4 ALEVEILARETIKPSSPTPHNLRNFKLSLLDQIMPVEYTAAILFYSNNGHHADGAEMSQR 63
++++E+ ++P+ TP RN S +D ++P +T ++ FY G + ++
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTG--SSNFFDAKV 60
Query: 64 LKAALPETLKNFYPFAGIIKDN----VLVECNDNGAVFVEARANYPLSEVLQQHDHKLLR 119
LK AL L FYP AG +K + + +ECN G +FVEA ++ + + LR
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 120 EFLPIEIESTKAGSGPLLLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAKSWAATVLDP 179
+P S S LL+ QVT FKCGGV++G + H ADG + SW+ D
Sbjct: 121 RLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWS----DM 176
Query: 180 GNKAKVNTPEYVIAASLF----------------PPDDSLEPHADVTGQNYITKRFVFHA 223
V P ++ L PP ++ P + T +F
Sbjct: 177 ARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKL 236
Query: 224 SK--IAQLKAKVT-SASVPKPTRVEAIVALIWKSTITASRSIRGFPRVSLTAH--SMNLR 278
++ I+ LKAK + + E + +W+ A RG T + + R
Sbjct: 237 TREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA----RGLEVDQGTKLYIATDGR 292
Query: 279 RMVSPPLPDNCVGNFVGDFPAKATQREIELQDLVHQLRKGKDEFCK------NGMQNILE 332
+ P LP GN + A ++E + + + K D + + LE
Sbjct: 293 ARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 352
Query: 333 KKSSLMHGVEGDAVDFYM----YSDLSRLPMYDTDFGLGKPVWVTIPNYMHNMI--MLLS 386
+ L V G A F + RLP++D DFG G+P+++ + + +L S
Sbjct: 353 LQPDLKALVRG-AHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPS 411
Query: 387 TRNGEGIEALVSLSEEDMALFE 408
N + +SL E M LF+
Sbjct: 412 PTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 181/442 (40%), Gaps = 50/442 (11%)
Query: 4 ALEVEILARETIKPSSPTPHNLRNFKLSLLDQIMPVEYTAAILFYSNNGHHADGAEMSQR 63
++++E+ ++P+ TP RN S +D ++P +T ++ FY G + ++
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTG--SSNFFDAKV 60
Query: 64 LKAALPETLKNFYPFAGIIKDN----VLVECNDNGAVFVEARANYPLSEVLQQHDHKLLR 119
LK AL L FYP AG +K + + +ECN G +FVEA ++ + + LR
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 120 EFLPIEIESTKAGSGPLLLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAKSWAATVLDP 179
+P S S LL+ QVT FK GGV++G + H ADG + SW+ D
Sbjct: 121 RLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWS----DM 176
Query: 180 GNKAKVNTPEYVIAASLF----------------PPDDSLEPHADVTGQNYITKRFVFHA 223
V P ++ L PP ++ P + T +F
Sbjct: 177 ARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKL 236
Query: 224 SK--IAQLKAKVT-SASVPKPTRVEAIVALIWKSTITASRSIRGFPRVSLTAH--SMNLR 278
++ I+ LKAK + + E + +W+ A RG T + + R
Sbjct: 237 TREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA----RGLEVDQGTKLYIATDGR 292
Query: 279 RMVSPPLPDNCVGNFVGDFPAKATQREIELQDLVHQLRKGKDEFCK------NGMQNILE 332
+ P LP GN + A ++E + + + K D + + LE
Sbjct: 293 ARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 352
Query: 333 KKSSLMHGVEGDAVDFYM----YSDLSRLPMYDTDFGLGKPVWVTIPNYMHNMI--MLLS 386
+ L V G A F + RLP++D DFG G+P+++ + + +L S
Sbjct: 353 LQPDLKALVRG-AHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPS 411
Query: 387 TRNGEGIEALVSLSEEDMALFE 408
N + +SL E M LF+
Sbjct: 412 PTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 157/393 (39%), Gaps = 64/393 (16%)
Query: 64 LKAALPETLKNFYPFAGII--------KDNVLVECNDNGAVFVEARANYPLSEVLQQHDH 115
+K +L TLK+FYPF G + K + D+ AV A N L+E+ H
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAV-TFAECNLDLNELTGNHPR 123
Query: 116 KL--LREFLPIEIESTKAGSG---PLLLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAK 170
+ +PI EST+ PL QVT+F G+A+G H + D K
Sbjct: 124 NCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLK 183
Query: 171 SWAATVLDPGNK----AKVNTPEY--VIAASLFPPDDSLEPHADVTG--QNYITKR---- 218
+W + N A P Y +I + D++ A V ++Y+T+
Sbjct: 184 AWTSIARSGNNDESFLANGTRPLYDRIIKYPML--DEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 219 -------FVFHASKIAQLKAKVTSASVPKPTRVEAI---VALIWKSTITASRSIRGFPRV 268
F+ + I QLK +V A +P V + A IW S I SR+ ++
Sbjct: 242 SDKLRATFILTRAVINQLKDRVL-AQLPTLEYVSSFTVACAYIW-SCIAKSRN----DKL 295
Query: 269 SLTAHSMNLRRMVSPPLPDNCVGNFVGDFPAKA------------TQREIELQDLVHQLR 316
L ++ R + PP+P GN VG A A T ++ ++L L
Sbjct: 296 QLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLT 355
Query: 317 KGKDEFCKNGMQNILEKKSSLMHGVEGDAVDFYMYSDLSRLPMYDTDFGLGKPVWVTIPN 376
KD K+ M++ + S EG S +L YD DFG GKP + +
Sbjct: 356 DYKDGVLKDDMESFNDLVS------EGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVS 409
Query: 377 YMHNMIMLLST--RNGEGIEALVSLSEEDMALF 407
HN + +++ + E +E V +S M F
Sbjct: 410 IDHNGAISINSCKESNEDLEIGVCISATQMEDF 442
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 150/384 (39%), Gaps = 60/384 (15%)
Query: 64 LKAALPETLKNFYPFAGII--------KDNVLVECNDNGAVFVEARANYPLSEVLQQHDH 115
+K +L TLK+FYPF G + K + D+ AV A N L+E+ H
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAV-TFAECNLDLNELTGNHPR 123
Query: 116 KL--LREFLPIEIESTKAGSG---PLLLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAK 170
+ +PI EST+ PL QVT+F G+A+G H + D K
Sbjct: 124 NCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLK 183
Query: 171 SWAATVLDPGNK----AKVNTPEYVIAASLFPPDDSLEPHADVTG--QNYITKR------ 218
+W + N A P Y D++ A V ++Y+T+
Sbjct: 184 AWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSD 243
Query: 219 -----FVFHASKIAQLKAKVTSASVPKPTRVEAI---VALIWKSTITASRSIRGFPRVSL 270
F+ + I QLK +V A +P V + A IW S I SR+ ++ L
Sbjct: 244 KLRATFILTRAVINQLKDRVL-AQLPTLEYVSSFTVACAYIW-SCIAKSRN----DKLQL 297
Query: 271 TAHSMNLRRMVSPPLPDNCVGNFVGDFPAKA------------TQREIELQDLVHQLRKG 318
++ R PP+P GN VG A A T ++ ++L L
Sbjct: 298 FGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDY 357
Query: 319 KDEFCKNGMQNILEKKSSLMHGVEGDAVDFYMYSDLSRLPMYDTDFGLGKPVWVTIPNYM 378
KD K+ ++ + S EG S +L YD DFG GKP + +
Sbjct: 358 KDGVLKDDXESFNDLVS------EGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSID 411
Query: 379 HNMIMLLST--RNGEGIEALVSLS 400
HN + +++ + E +E V +S
Sbjct: 412 HNGAISINSCKESNEDLEIGVCIS 435
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 127/359 (35%), Gaps = 71/359 (19%)
Query: 64 LKAALPETLKNFYPFAGIIK---------DNVLVECNDNGAVFVEARANYPLSEVLQQHD 114
LK +L TLK + P AG + + V N +F E+ ++ +
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRN 119
Query: 115 HKLLREFLPIEIESTKAGS---GPLLLTQVTIFKCGGVAVGNCLSHKIADGCAASFLAKS 171
K F+P E A P+L QVT+F G+++G H DG ++
Sbjct: 120 TKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRA 179
Query: 172 WA----------------------ATVLDPGNKAKVNTPEYVIAASLFPPDDSLEPHADV 209
WA + + DP E D + P V
Sbjct: 180 WALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKV 239
Query: 210 TGQNYITKRFVFHASKIAQLKAKVTSASVPKPTRVEAIV---ALIWKSTITASRSIRGFP 266
G IT+ I +LK V + PK T V + A +W + I S + G
Sbjct: 240 RGTFIITRH------DIGKLKNLVLTRR-PKLTHVTSFTVTCAYVW-TCIIKSEAATGEE 291
Query: 267 ----RVSLTAHSMNLRRMVSPPLPDNCVGNFVGDFPAKATQREIELQDLVHQLRKGKD-- 320
+ + R +PPLP + GN + + A+ R+++L GK+
Sbjct: 292 IDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVART--RQVDLA--------GKEGF 341
Query: 321 ----EFCKNGMQNILEKKSSLMHGV---EGDAVDFYMYSDLS---RLPMYDTDFGLGKP 369
E ++ + + ++ G E D VD ++ +L +Y DFG G+P
Sbjct: 342 TIAVELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 219 FVFHASKIAQLK---AKVTSASVPKPTRVEAIVALIWKSTITASRSIRGFPRVSLTAHSM 275
F F +++LK K AS + +A+ A IWKS ASR +R R+ +A +
Sbjct: 234 FTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKS---ASR-VR-LERIDGSAPTE 288
Query: 276 NLRRMVSPP---LPDNCVGNFVGDFPAKATQREIELQDLVHQLRKGKDEFCKNGMQNILE 332
R + + P + +N G +T EI + L + + E M+
Sbjct: 289 FCRAVDARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASMRQRTR 348
Query: 333 KKSSLMHG----------VEGDAVDFYMYSDLSRLPMYDTDFG--LGKPVWVTIPNY--M 378
++ +H + D M S +++ ++D DFG LGKP V P + +
Sbjct: 349 GLATYLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFGLGLGKPETVRRPIFEPV 408
Query: 379 HNMIMLLSTR-NGEGIEALVSLSEEDMALFERDEELLAFA 417
+++ + + +GE AL SL +EDM + D+E +A
Sbjct: 409 ESLMYFMPKKPDGEFCAAL-SLRDEDMDRLKADKEWTKYA 447
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 360 YDTDFGLGKPVWVTIPNY--MHNMIMLLSTRNGEGIEALVSLSEEDMALFERDEELLAFA 417
YD FGLGKP V P + ++ + A +SL +ED + DEE +A
Sbjct: 396 YDFGFGLGKPESVRRPRFEPFESLXYFXPKKPDGEFTASISLRDEDXERLKADEEWTKYA 455
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 106 LSEVLQQHDHKLLREFLPIEIESTKAGS 133
+ E +++H K +R+F+PI++E +AG+
Sbjct: 250 IGEHMEEHGIKFIRQFVPIKVEQIEAGT 277
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 106 LSEVLQQHDHKLLREFLPIEIESTKAGS 133
+ E +++H K +R+F+PI++E +AG+
Sbjct: 256 IGEHMEEHGIKFIRQFVPIKVEQIEAGT 283
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 106 LSEVLQQHDHKLLREFLPIEIESTKAGS 133
+ E +++H K +R+F+PI++E +AG+
Sbjct: 256 IGEHMEEHGIKFIRQFVPIKVEQIEAGT 283
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 106 LSEVLQQHDHKLLREFLPIEIESTKAGS 133
+ E +++H K +R+F+PI++E +AG+
Sbjct: 258 IGEHMEEHGIKFIRQFVPIKVEQIEAGT 285
>pdb|1NEC|A Chain A, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|B Chain B, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|C Chain C, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|D Chain D, Nitroreductase From Enterobacter Cloacae
Length = 216
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 351 YSDLSRLPMYDTDFGLGKPVWVTIPNYMHNM-IMLLSTRNGEGIEALVSLSEEDMALFER 409
++D+ R+ + D D + K V++ + N++ + M L EG +A ++ +E+ L E+
Sbjct: 123 FADMHRVDLKDDDQWMAKQVYLNVGNFLLGVGAMGLDAVPIEGFDA--AILDEEFGLKEK 180
Query: 410 DEELLAFADPNPSVLPVANHSTRKFAA 436
L V+PV +HS F A
Sbjct: 181 GFTSLV-------VVPVGHHSVEDFNA 200
>pdb|1KQB|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQC|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQD|A Chain A, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|B Chain B, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|C Chain C, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|D Chain D, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
Length = 217
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 351 YSDLSRLPMYDTDFGLGKPVWVTIPNYMHNM-IMLLSTRNGEGIEALVSLSEEDMALFER 409
++D+ R+ + D D + K V++ + N++ + M L EG +A ++ +E+ L E+
Sbjct: 124 FADMHRVDLKDDDQWMAKQVYLNVGNFLLGVGAMGLDAVPIEGFDA--AILDEEFGLKEK 181
Query: 410 DEELLAFADPNPSVLPVANHSTRKFAA 436
L V+PV +HS F A
Sbjct: 182 GFTSLV-------VVPVGHHSVEDFNA 201
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 106 LSEVLQQHDHKLLREFLPIEIESTKAGS 133
+ E +++H K +R+F+P +IE +AG+
Sbjct: 236 IGEHMEEHGIKFIRQFVPTKIEQIEAGT 263
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 106 LSEVLQQHDHKLLREFLPIEIESTKAGS 133
+ E +++H K +R+F+P +IE +AG+
Sbjct: 236 IGEHMEEHGIKFIRQFVPTKIEQIEAGT 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,024,171
Number of Sequences: 62578
Number of extensions: 526662
Number of successful extensions: 1226
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 20
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)