Query 013772
Match_columns 436
No_of_seqs 299 out of 1409
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.7E-62 5.9E-67 486.2 38.6 330 73-427 81-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 4.6E-57 9.9E-62 450.7 33.8 318 63-430 109-453 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 1.2E-55 2.7E-60 436.5 36.4 338 66-426 36-397 (398)
4 cd05472 cnd41_like Chloroplast 100.0 2.3E-55 5E-60 420.1 33.7 287 76-425 1-299 (299)
5 cd05475 nucellin_like Nucellin 100.0 2.3E-55 5.1E-60 413.9 31.5 270 75-425 1-273 (273)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.3E-55 9.3E-60 422.6 33.2 296 75-426 2-326 (326)
7 cd05478 pepsin_A Pepsin A, asp 100.0 9.7E-55 2.1E-59 418.9 32.6 296 73-422 7-317 (317)
8 cd05490 Cathepsin_D2 Cathepsin 100.0 3.8E-54 8.1E-59 416.4 33.2 299 73-422 3-325 (325)
9 cd05486 Cathespin_E Cathepsin 100.0 2.1E-54 4.5E-59 416.4 30.7 294 77-422 1-316 (316)
10 cd05477 gastricsin Gastricsins 100.0 1.4E-53 3.1E-58 411.1 34.0 298 75-423 2-318 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.9E-53 4.1E-58 410.3 32.2 297 73-422 7-320 (320)
12 cd05487 renin_like Renin stimu 100.0 4.1E-53 8.8E-58 409.1 32.9 302 72-423 4-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 5.7E-53 1.2E-57 406.3 33.0 288 72-422 6-317 (317)
14 PTZ00147 plasmepsin-1; Provisi 100.0 8.3E-53 1.8E-57 417.0 34.1 308 60-424 125-450 (453)
15 cd05485 Cathepsin_D_like Cathe 100.0 1.2E-52 2.5E-57 406.0 32.0 300 72-422 7-329 (329)
16 cd05489 xylanase_inhibitor_I_l 100.0 3.4E-52 7.4E-57 405.2 34.3 323 83-423 2-361 (362)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.5E-52 1.6E-56 409.3 34.8 307 61-424 125-449 (450)
18 cd05473 beta_secretase_like Be 100.0 1.2E-51 2.7E-56 404.5 32.7 317 76-430 3-352 (364)
19 cd05476 pepsin_A_like_plant Ch 100.0 6.9E-51 1.5E-55 382.2 29.9 246 76-425 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 1.2E-49 2.6E-54 376.6 27.3 265 77-422 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 4.7E-49 1E-53 376.2 28.7 265 76-423 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1E-48 2.2E-53 377.8 20.3 298 76-423 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 6.3E-46 1.4E-50 352.5 29.3 266 77-422 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1E-29 2.3E-34 219.9 14.5 156 77-246 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 9.3E-25 2E-29 188.9 14.8 151 266-422 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 3.3E-22 7.1E-27 161.6 12.9 106 79-209 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 3.9E-06 8.5E-11 65.4 7.0 93 76-211 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.1 0.0039 8.5E-08 50.8 9.2 100 66-210 3-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.4 0.023 4.9E-07 43.2 8.3 89 79-210 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.3 0.16 3.4E-06 41.5 9.1 91 74-210 14-106 (124)
31 cd05479 RP_DDI RP_DDI; retrope 92.7 1.3 2.9E-05 36.0 9.7 26 395-420 99-124 (124)
32 COG3577 Predicted aspartyl pro 92.5 0.75 1.6E-05 40.4 8.0 88 61-187 92-179 (215)
33 cd05484 retropepsin_like_LTR_2 91.9 0.2 4.3E-06 38.3 3.6 28 77-106 1-28 (91)
34 cd06095 RP_RTVL_H_like Retrope 91.6 0.91 2E-05 34.3 6.9 25 80-106 2-26 (86)
35 TIGR02281 clan_AA_DTGA clan AA 88.5 0.68 1.5E-05 37.6 4.1 41 258-306 3-43 (121)
36 PF13975 gag-asp_proteas: gag- 88.5 0.87 1.9E-05 33.1 4.3 32 73-106 5-36 (72)
37 TIGR03698 clan_AA_DTGF clan AA 86.8 2 4.4E-05 34.0 5.8 24 395-418 84-107 (107)
38 PF08284 RVP_2: Retroviral asp 85.8 1 2.2E-05 37.4 3.7 28 396-423 105-132 (135)
39 PF13650 Asp_protease_2: Aspar 81.6 1.8 3.8E-05 32.5 3.4 29 274-307 3-31 (90)
40 PF00077 RVP: Retroviral aspar 80.6 2.7 5.8E-05 32.5 4.1 27 78-106 7-33 (100)
41 cd05484 retropepsin_like_LTR_2 79.0 2.6 5.6E-05 32.1 3.5 30 273-307 4-33 (91)
42 PF13975 gag-asp_proteas: gag- 78.1 3.5 7.7E-05 29.9 3.8 30 273-307 12-41 (72)
43 cd05483 retropepsin_like_bacte 72.4 6 0.00013 29.9 4.0 30 273-307 6-35 (96)
44 cd05482 HIV_retropepsin_like R 71.4 5.9 0.00013 30.0 3.6 25 80-106 2-26 (87)
45 PF07172 GRP: Glycine rich pro 71.3 2.2 4.8E-05 32.9 1.3 20 1-21 1-20 (95)
46 cd06095 RP_RTVL_H_like Retrope 69.3 5.5 0.00012 30.0 3.1 29 274-307 3-31 (86)
47 PF12384 Peptidase_A2B: Ty3 tr 67.5 7.4 0.00016 33.0 3.6 29 78-106 34-62 (177)
48 PF00077 RVP: Retroviral aspar 62.3 6.3 0.00014 30.4 2.3 26 272-302 8-33 (100)
49 COG3577 Predicted aspartyl pro 59.8 24 0.00053 31.2 5.6 42 256-305 95-136 (215)
50 PF02160 Peptidase_A3: Caulifl 55.6 34 0.00074 30.3 5.9 27 395-422 91-117 (201)
51 cd05481 retropepsin_like_LTR_1 53.5 9.9 0.00021 29.2 2.0 31 274-308 3-33 (93)
52 TIGR03698 clan_AA_DTGF clan AA 53.5 76 0.0016 24.9 7.1 63 79-175 2-69 (107)
53 KOG0012 DNA damage inducible p 47.8 1.6E+02 0.0034 28.6 9.2 40 381-424 307-347 (380)
54 COG5550 Predicted aspartyl pro 46.8 13 0.00027 30.0 1.6 89 287-418 28-117 (125)
55 PF09668 Asp_protease: Asparty 46.4 13 0.00028 30.2 1.7 37 74-113 22-58 (124)
56 PF05984 Cytomega_UL20A: Cytom 44.1 19 0.0004 26.6 2.0 26 4-29 2-27 (100)
57 PF09668 Asp_protease: Asparty 43.5 26 0.00057 28.5 3.0 29 273-306 28-56 (124)
58 PF12508 DUF3714: Protein of u 39.4 1.3E+02 0.0027 26.8 6.9 70 244-316 81-151 (200)
59 cd05475 nucellin_like Nucellin 33.7 56 0.0012 30.4 4.1 32 75-106 157-194 (273)
60 cd05472 cnd41_like Chloroplast 29.6 40 0.00086 31.8 2.4 32 75-106 146-188 (299)
61 cd06098 phytepsin Phytepsin, a 28.9 60 0.0013 31.0 3.6 32 75-106 188-227 (317)
62 cd06094 RP_Saci_like RP_Saci_l 28.2 2.7E+02 0.0059 21.2 7.8 18 89-106 9-26 (89)
63 cd05476 pepsin_A_like_plant Ch 27.7 79 0.0017 29.2 4.0 18 89-106 176-193 (265)
64 PF08284 RVP_2: Retroviral asp 24.2 1.1E+02 0.0024 25.1 3.9 29 76-106 21-49 (135)
65 cd05471 pepsin_like Pepsin-lik 23.8 72 0.0016 29.4 3.0 42 63-106 170-219 (283)
66 PF15240 Pro-rich: Proline-ric 23.5 47 0.001 28.8 1.5 12 4-15 2-13 (179)
67 PF13956 Ibs_toxin: Toxin Ibs, 22.9 45 0.00098 17.0 0.7 6 4-9 2-7 (19)
68 TIGR03779 Bac_Flav_CT_M Bacter 22.7 3.2E+02 0.0069 27.3 7.2 51 264-316 303-354 (410)
69 COG3317 NlpB Uncharacterized l 20.8 99 0.0021 29.7 3.1 26 81-106 75-106 (342)
70 PF13752 DUF4165: Domain of un 20.4 1.5E+02 0.0034 23.9 3.7 49 242-293 74-122 (124)
71 cd05486 Cathespin_E Cathepsin 20.3 81 0.0018 30.0 2.6 32 75-106 177-215 (316)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.7e-62 Score=486.22 Aligned_cols=330 Identities=28% Similarity=0.539 Sum_probs=274.5
Q ss_pred CCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCC
Q 013772 73 PTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSND----LVPCEDPICASLHAPGQHKCEDP 148 (436)
Q Consensus 73 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S----~~~c~s~~c~~~~~~~~~~c~~~ 148 (436)
.++.|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|||++| .++|+++.|..++. ...|..+
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence 4668999999999999999999999999999999 999999988999999998 58999999987653 2347665
Q ss_pred CCCeeeeeeCCCceEEEEEEEEEEEeecCCC-CcCCCceEEeeeeecCCCCCCCCCceeeeecCCCCcHHHHhhhccccc
Q 013772 149 TQCDYEVEYADGGSSLGVLVKDAFAFNYTNG-QRLNPRLALGCGYDQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 227 (436)
Q Consensus 149 ~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~ 227 (436)
+.|.|.+.|+||+.+.|.+++|+|+|+...+ ...++++.|||++.+ .+......+||||||+.+.|+++||..+ +.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~-~g~f~~~~~GilGLG~~~~Sl~sql~~~--~~ 234 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNN-GGTFDEKGSGIVGLGGGPLSLISQLGSS--IG 234 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCC-CCCccCCCceeEecCCCCccHHHHhhHh--hC
Confidence 6799999999998889999999999965322 246889999999875 4422235899999999999999999763 55
Q ss_pred eeeEEEeCC-----CCCceEEeCCCCCCC-CCcEEEEcccC-CCCceeeEeeEEEECCEEeccCC--------CCEEEec
Q 013772 228 NVVGHCLSG-----RGGGFLFFGDDLYDS-SRVVWTSMSSD-YTKYYSPGVAELFFGGKTTGLKN--------LPVVFDS 292 (436)
Q Consensus 228 ~~Fs~~l~~-----~~~G~l~fG~~~~~~-~~~~~~p~~~~-~~~~~~v~l~~i~v~g~~i~~~~--------~~~iiDS 292 (436)
++||+||.+ ...|.|+||+..+.. ..+.|+|++.+ +..+|.|.+++|+||++.+.++. ..+||||
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDS 314 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDS 314 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeC
Confidence 699999963 247999999865544 45899999854 34799999999999999887643 4799999
Q ss_pred cccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCcee
Q 013772 293 GSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAY 372 (436)
Q Consensus 293 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y 372 (436)
||++++||+++|+++.++|.+++..... ......++.|+.... ...+|+|+|+|+| +.+.|++++|
T Consensus 315 GTt~t~Lp~~~y~~l~~~~~~~~~~~~~--~~~~~~~~~C~~~~~--------~~~~P~i~~~F~G----a~~~l~~~~~ 380 (431)
T PLN03146 315 GTTLTLLPSDFYSELESAVEEAIGGERV--SDPQGLLSLCYSSTS--------DIKLPIITAHFTG----ADVKLQPLNT 380 (431)
T ss_pred CccceecCHHHHHHHHHHHHHHhccccC--CCCCCCCCccccCCC--------CCCCCeEEEEECC----CeeecCccee
Confidence 9999999999999999999998863211 112234668987432 1248999999996 9999999999
Q ss_pred EEEeCCCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCCCCC
Q 013772 373 LIISNRGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPANCDR 427 (436)
Q Consensus 373 ~~~~~~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c~~ 427 (436)
++...++..|+++.... +.+|||+.|||++|+|||++++|||||+.+|++
T Consensus 381 ~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 381 FVKVSEDLVCFAMIPTS-----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEEcCCCcEEEEEecCC-----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 99877778999987643 469999999999999999999999999999986
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=4.6e-57 Score=450.67 Aligned_cols=318 Identities=23% Similarity=0.412 Sum_probs=253.3
Q ss_pred eEEEEeecccCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 013772 63 LLFRVQGNVYPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQ 142 (436)
Q Consensus 63 ~~~~l~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~ 142 (436)
...||. .|.+.+|+++|+||||||+|.|+|||||+++||+|. .|..|....++.|||++|+ ++.....
T Consensus 109 ~~~~l~--n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SS------Ty~~~~~--- 176 (482)
T PTZ00165 109 LQQDLL--NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSS------TYTKLKL--- 176 (482)
T ss_pred cceecc--cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccC------CcEecCC---
Confidence 445555 457889999999999999999999999999999998 8986444457889999883 2332110
Q ss_pred CCCCCCCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCCCC------
Q 013772 143 HKCEDPTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKGKS------ 214 (436)
Q Consensus 143 ~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~------ 214 (436)
......+.+.|++| ++.|.+++|+|+| |+..++++.||+++.. .+ +...++|||||||++..
T Consensus 177 ----~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~-s~~~f~~~~~DGILGLg~~~~s~~s~~ 246 (482)
T PTZ00165 177 ----GDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEE-SLHPFADLPFDGLVGLGFPDKDFKESK 246 (482)
T ss_pred ----CCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEec-cccccccccccceeecCCCcccccccC
Confidence 00122577999999 7889999999999 5678999999999885 33 55567999999998753
Q ss_pred ---cHHHHhhhcccc-ceeeEEEeCC--CCCceEEeCCCCC--C--CCCcEEEEcccCCCCceeeEeeEEEECCEEecc-
Q 013772 215 ---SIVSQLHSQKLI-RNVVGHCLSG--RGGGFLFFGDDLY--D--SSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGL- 283 (436)
Q Consensus 215 ---s~~~ql~~~g~i-~~~Fs~~l~~--~~~G~l~fG~~~~--~--~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~- 283 (436)
+++++|++||+| +++||+||++ ..+|+|+||+.+. . .+++.|+|+.. ..||.|.+++|+|+++.+..
T Consensus 247 ~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~--~~yW~i~l~~i~vgg~~~~~~ 324 (482)
T PTZ00165 247 KALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS--TDYWEIEVVDILIDGKSLGFC 324 (482)
T ss_pred CCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc--cceEEEEeCeEEECCEEeeec
Confidence 589999999999 8999999973 4579999998763 2 46899999975 48999999999999987654
Q ss_pred -CCCCEEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCC-Cc
Q 013772 284 -KNLPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDG-KT 361 (436)
Q Consensus 284 -~~~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g-~~ 361 (436)
....+|+||||+++++|++++++|.+++... .+|+... .+|+|+|+|++. +.
T Consensus 325 ~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------------~~C~~~~-----------~lP~itf~f~g~~g~ 378 (482)
T PTZ00165 325 DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE---------------EDCSNKD-----------SLPRISFVLEDVNGR 378 (482)
T ss_pred CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------ccccccc-----------cCCceEEEECCCCCc
Confidence 3578999999999999999999888877421 1487532 379999999851 22
Q ss_pred ceEEEEcCceeEEEe----CCCeEE-EEEEeCCcCC-CCCceeeChhhhcceEEEEECCCCEEEEEeCCCCCCcc
Q 013772 362 RTLFELTTEAYLIIS----NRGNVC-LGILNGAEVG-LQDLNVIGDISMQDRVVIYDNEKQRIGWMPANCDRIPK 430 (436)
Q Consensus 362 ~~~~~i~~~~y~~~~----~~~~~C-l~~~~~~~~~-~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c~~~~~ 430 (436)
.+++.++|++|+++. ..+..| ++++..+..+ .++.||||++|||++|+|||++++|||||+++|+....
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~~ 453 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSGP 453 (482)
T ss_pred eEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCCC
Confidence 359999999999863 234589 5787654211 24679999999999999999999999999999876554
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-55 Score=436.45 Aligned_cols=338 Identities=33% Similarity=0.641 Sum_probs=278.6
Q ss_pred EEeecccCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCC-CCCCCCCCCCCCCCC----CCCCCCcccccCCCC
Q 013772 66 RVQGNVYPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCV-QCVEAPHPLYRPSND----LVPCEDPICASLHAP 140 (436)
Q Consensus 66 ~l~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~-~C~~~~~~~y~p~~S----~~~c~s~~c~~~~~~ 140 (436)
+.....+..+.|+++|.||||||+|.|+|||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|.....
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~- 113 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ- 113 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc-
Confidence 33334556779999999999999999999999999999998 999 898876666999998 69999999998754
Q ss_pred CCCCCCCCCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC-CCC-CCCceeeeecCCCCcHHH
Q 013772 141 GQHKCEDPTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG-ASY-HPLDGILGLGKGKSSIVS 218 (436)
Q Consensus 141 ~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~-~~~~GIlGLg~~~~s~~~ 218 (436)
.|..++.|.|.+.|+||++++|.+++|+|+|+..+ ...++++.|||+..+ .+ +.. .+.+||||||+..++++.
T Consensus 114 ---~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~-~g~~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 114 ---SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNN-PGSFGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred ---CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecC-ccccccccccceEeecCCCCcccee
Confidence 37777999999999998899999999999995322 266778999999987 43 222 578999999999999999
Q ss_pred HhhhccccceeeEEEeCCC-----CCceEEeCCCCC--CCCCcEEEEcccCCCCceeeEeeEEEECCEE------eccCC
Q 013772 219 QLHSQKLIRNVVGHCLSGR-----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGKT------TGLKN 285 (436)
Q Consensus 219 ql~~~g~i~~~Fs~~l~~~-----~~G~l~fG~~~~--~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~------i~~~~ 285 (436)
|+...+...++||+||.+. ..|.|+||+.+. ..+.+.|+|++.+...+|.|.+.+|+|+++. ...+.
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~ 268 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDG 268 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCC
Confidence 9999887777999999854 379999998763 4578999999976445999999999999843 22224
Q ss_pred CCEEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEE
Q 013772 286 LPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLF 365 (436)
Q Consensus 286 ~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~ 365 (436)
.++|+||||++++||+++|++|.++|.+.+. . ....+.++..|+...... ..+|.|+|+|++ ++.|
T Consensus 269 ~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-------~~~P~i~~~f~~---g~~~ 334 (398)
T KOG1339|consen 269 GGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-------VKLPDITFHFGG---GAVF 334 (398)
T ss_pred CCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-------ccCCcEEEEECC---CcEE
Confidence 8899999999999999999999999998641 0 111344556799765311 348999999996 3999
Q ss_pred EEcCceeEEEeCCCeE-EEEEEeCCcCCCCCceeeChhhhcceEEEEECC-CCEEEEEe--CCCC
Q 013772 366 ELTTEAYLIISNRGNV-CLGILNGAEVGLQDLNVIGDISMQDRVVIYDNE-KQRIGWMP--ANCD 426 (436)
Q Consensus 366 ~i~~~~y~~~~~~~~~-Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~-~~riGfa~--~~c~ 426 (436)
.+++++|+++..++.. |+++....... ..||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 335 ~l~~~~y~~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 335 SLPPKNYLVEVSDGGGVCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EeCccceEEEECCCCCceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999999998766544 99888765321 58999999999999999999 99999999 6675
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.3e-55 Score=420.09 Aligned_cols=287 Identities=32% Similarity=0.573 Sum_probs=237.2
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeee
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEV 155 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~ 155 (436)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-----------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-----------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-----------------------------------------Ceeee
Confidence 4999999999999999999999999999886 43 36889
Q ss_pred eeCCCceEEEEEEEEEEEeecCCCCc-CCCceEEeeeeecCCCCCCCCCceeeeecCCCCcHHHHhhhccccceeeEEEe
Q 013772 156 EYADGGSSLGVLVKDAFAFNYTNGQR-LNPRLALGCGYDQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCL 234 (436)
Q Consensus 156 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~-~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~~l 234 (436)
.|++|+.++|.+++|+|+| ++. .++++.|||+..+ .+. ....+||||||+...+++.|+..+ .+++||+||
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~i----g~~~~~~~~~Fg~~~~~-~~~-~~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L 110 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTL----GSSDVVPGFAFGCGHDN-EGL-FGGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCL 110 (299)
T ss_pred EeCCCceEEEEEEEEEEEe----CCCCccCCEEEECCccC-CCc-cCCCCEEEECCCCcchHHHHhhHh--hcCceEEEc
Confidence 9999987899999999999 444 6889999999875 442 237899999999999999998765 468999999
Q ss_pred CC---CCCceEEeCCCCCCCCCcEEEEcccCC--CCceeeEeeEEEECCEEeccC-----CCCEEEeccccccccCHHHH
Q 013772 235 SG---RGGGFLFFGDDLYDSSRVVWTSMSSDY--TKYYSPGVAELFFGGKTTGLK-----NLPVVFDSGSSYTYLSHVAY 304 (436)
Q Consensus 235 ~~---~~~G~l~fG~~~~~~~~~~~~p~~~~~--~~~~~v~l~~i~v~g~~i~~~-----~~~~iiDSGTt~~~lp~~~~ 304 (436)
.+ ...|+|+||+.+...+++.|+|++.++ ..+|.|.+++|+|+++.+... ...++|||||++++||+++|
T Consensus 111 ~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred cCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 85 457999999987658899999998654 379999999999999988652 46899999999999999999
Q ss_pred HHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEe-CCCeEEE
Q 013772 305 QTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIIS-NRGNVCL 383 (436)
Q Consensus 305 ~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~-~~~~~Cl 383 (436)
++|.+++.++.... ........++.|++... .....+|+|+|+|++ +..+.|++++|++.. ..+..|+
T Consensus 191 ~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~------~~~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C~ 259 (299)
T cd05472 191 AALRDAFRAAMAAY--PRAPGFSILDTCYDLSG------FRSVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVCL 259 (299)
T ss_pred HHHHHHHHHHhccC--CCCCCCCCCCccCcCCC------CcCCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEEE
Confidence 99999998876421 11212334446986432 012358999999985 399999999999843 4567899
Q ss_pred EEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCCC
Q 013772 384 GILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPANC 425 (436)
Q Consensus 384 ~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c 425 (436)
++..... ..+.+|||+.|||++|+|||++++|||||+++|
T Consensus 260 ~~~~~~~--~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 260 AFAGTSD--DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEeCCCC--CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 8876531 245799999999999999999999999999999
No 5
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.3e-55 Score=413.94 Aligned_cols=270 Identities=65% Similarity=1.158 Sum_probs=229.4
Q ss_pred eeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeee
Q 013772 75 GYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYE 154 (436)
Q Consensus 75 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~ 154 (436)
++|+++|.||||+|++.|+|||||+++||+|..+|..| .|.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 47999999999999999999999999999984245444 25799
Q ss_pred eeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCC--CCCCCceeeeecCCCCcHHHHhhhccccceeeEE
Q 013772 155 VEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGA--SYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGH 232 (436)
Q Consensus 155 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~ 232 (436)
+.|+||+.++|.+++|+|+|+..+++..++++.|||+..+.... .....+||||||+.+.++++||+++++|+++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 99998889999999999999765566678899999998752221 3356899999999999999999999988999999
Q ss_pred EeCCCCCceEEeCCCCCCCCCcEEEEcccCC-CCceeeEeeEEEECCEEeccCCCCEEEeccccccccCHHHHHHHHHHH
Q 013772 233 CLSGRGGGFLFFGDDLYDSSRVVWTSMSSDY-TKYYSPGVAELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTLTSMM 311 (436)
Q Consensus 233 ~l~~~~~G~l~fG~~~~~~~~~~~~p~~~~~-~~~~~v~l~~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l~~~i 311 (436)
||++...|.|+||+..++.+++.|+|+..++ ..+|.|++.+|+||++.+......++|||||++++||+++|
T Consensus 124 ~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y------- 196 (273)
T cd05475 124 CLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------- 196 (273)
T ss_pred EccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-------
Confidence 9997777999999876677889999998643 37999999999999997665567899999999999999654
Q ss_pred HHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCCCeEEEEEEeCCcC
Q 013772 312 KRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNRGNVCLGILNGAEV 391 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~~~~Cl~~~~~~~~ 391 (436)
+|+|+|+|+++..+++++|+|++|++...++..|++++.....
T Consensus 197 -------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~ 239 (273)
T cd05475 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEI 239 (273)
T ss_pred -------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCc
Confidence 2788999986222379999999999876667799999876432
Q ss_pred CCCCceeeChhhhcceEEEEECCCCEEEEEeCCC
Q 013772 392 GLQDLNVIGDISMQDRVVIYDNEKQRIGWMPANC 425 (436)
Q Consensus 392 ~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c 425 (436)
...+.||||+.|||++|+|||++++|||||+++|
T Consensus 240 ~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 240 GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 2346799999999999999999999999999999
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.3e-55 Score=422.61 Aligned_cols=296 Identities=24% Similarity=0.473 Sum_probs=241.3
Q ss_pred eeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCCCC
Q 013772 75 GYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSND----LVPCEDPICASLHAPGQHKCEDPTQ 150 (436)
Q Consensus 75 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S----~~~c~s~~c~~~~~~~~~~c~~~~~ 150 (436)
+.|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++| .+.|++..|.. ...|.+ +.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~~-~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCLN-NK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCCC-Cc
Confidence 47999999999999999999999999999999 999999888889999988 58899988843 234543 67
Q ss_pred CeeeeeeCCCceEEEEEEEEEEEeecCCCC---cCCCceEEeeeeecCCCCCCCCCceeeeecCCCC----cHHHHhhhc
Q 013772 151 CDYEVEYADGGSSLGVLVKDAFAFNYTNGQ---RLNPRLALGCGYDQVPGASYHPLDGILGLGKGKS----SIVSQLHSQ 223 (436)
Q Consensus 151 ~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~----s~~~ql~~~ 223 (436)
|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+..+...+.....+||||||+... +...+|.++
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~ 154 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK 154 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh
Confidence 999999999988999999999999642110 1123678999988622344567899999999863 233446666
Q ss_pred ccc-c--eeeEEEeCCCCCceEEeCCCCC--CC----------CCcEEEEcccCCCCceeeEeeEEEECCEE---eccCC
Q 013772 224 KLI-R--NVVGHCLSGRGGGFLFFGDDLY--DS----------SRVVWTSMSSDYTKYYSPGVAELFFGGKT---TGLKN 285 (436)
Q Consensus 224 g~i-~--~~Fs~~l~~~~~G~l~fG~~~~--~~----------~~~~~~p~~~~~~~~~~v~l~~i~v~g~~---i~~~~ 285 (436)
+.+ . ++||+||++ ..|.|+||+.+. .. +++.|+|+... .+|.|.+++|+|+++. ....+
T Consensus 155 ~~~~~~~~~FS~~l~~-~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~--~~y~v~l~~i~vg~~~~~~~~~~~ 231 (326)
T cd06096 155 RPKLKKDKIFSICLSE-DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK--YYYYVKLEGLSVYGTTSNSGNTKG 231 (326)
T ss_pred cccccCCceEEEEEcC-CCeEEEECccChhhhcccccccccccCCceEEeccCC--ceEEEEEEEEEEcccccceecccC
Confidence 655 3 899999995 469999998753 23 78999999754 8999999999999875 23346
Q ss_pred CCEEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEE
Q 013772 286 LPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLF 365 (436)
Q Consensus 286 ~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~ 365 (436)
..+++||||++++||+++|++|.+++ |+|+|.|++ +.++
T Consensus 232 ~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------------P~i~~~f~~---g~~~ 270 (326)
T cd06096 232 LGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------------PTITIIFEN---NLKI 270 (326)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------------CcEEEEEcC---CcEE
Confidence 78999999999999999988877544 588999985 3999
Q ss_pred EEcCceeEEEeCCCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCCCC
Q 013772 366 ELTTEAYLIISNRGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPANCD 426 (436)
Q Consensus 366 ~i~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c~ 426 (436)
+++|++|++...+..+|+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 271 ~i~p~~y~~~~~~~~c~~~~~~~-----~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 271 DWKPSSYLYKKESFWCKGGEKSV-----SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EECHHHhccccCCceEEEEEecC-----CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999976555566666543 357999999999999999999999999999994
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.7e-55 Score=418.91 Aligned_cols=296 Identities=21% Similarity=0.413 Sum_probs=243.3
Q ss_pred CCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCe
Q 013772 73 PTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCD 152 (436)
Q Consensus 73 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~ 152 (436)
.+..|+++|.||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++|. +++. ..+.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Ss------t~~~------------~~~~ 67 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSS------TYQS------------TGQP 67 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCc------ceee------------CCcE
Confidence 4779999999999999999999999999999998 8986554567899998883 2222 3568
Q ss_pred eeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCC--CCCCCceeeeecCCCC------cHHHHhhhcc
Q 013772 153 YEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGA--SYHPLDGILGLGKGKS------SIVSQLHSQK 224 (436)
Q Consensus 153 ~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~--~~~~~~GIlGLg~~~~------s~~~ql~~~g 224 (436)
|.+.|++| ++.|.+++|+|+| |+..++++.|||++.. .+. .....+||||||++.. +++++|+++|
T Consensus 68 ~~~~yg~g-s~~G~~~~D~v~i----g~~~i~~~~fg~~~~~-~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g 141 (317)
T cd05478 68 LSIQYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETE-PGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQG 141 (317)
T ss_pred EEEEECCc-eEEEEEeeeEEEE----CCEEECCEEEEEEEec-CccccccccccceeeeccchhcccCCCCHHHHHHhCC
Confidence 99999999 5899999999999 5677899999999875 432 2235899999998743 4899999999
Q ss_pred cc-ceeeEEEeCCC--CCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccC-CCCEEEeccccccc
Q 013772 225 LI-RNVVGHCLSGR--GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLK-NLPVVFDSGSSYTY 298 (436)
Q Consensus 225 ~i-~~~Fs~~l~~~--~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~-~~~~iiDSGTt~~~ 298 (436)
+| +++||+||.++ ..|.|+||+.+ ++.+++.|+|+.. ..+|.|.+++|.|+++.+... +..++|||||++++
T Consensus 142 ~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~--~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~ 219 (317)
T cd05478 142 LVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA--ETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLV 219 (317)
T ss_pred CCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC--CcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhh
Confidence 99 79999999854 46899999875 4679999999964 489999999999999988653 46899999999999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCC
Q 013772 299 LSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNR 378 (436)
Q Consensus 299 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~ 378 (436)
+|++++++|.+++..... . ......+|+... .+|.|+|+|++ ..+.|+|++|+.+.
T Consensus 220 lp~~~~~~l~~~~~~~~~------~-~~~~~~~C~~~~-----------~~P~~~f~f~g----~~~~i~~~~y~~~~-- 275 (317)
T cd05478 220 GPSSDIANIQSDIGASQN------Q-NGEMVVNCSSIS-----------SMPDVVFTING----VQYPLPPSAYILQD-- 275 (317)
T ss_pred CCHHHHHHHHHHhCCccc------c-CCcEEeCCcCcc-----------cCCcEEEEECC----EEEEECHHHheecC--
Confidence 999999999988854321 1 122223587532 37999999975 99999999999864
Q ss_pred CeEEE-EEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 379 GNVCL-GILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 379 ~~~Cl-~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
+..|+ ++.... ..+.||||+.|||++|+|||++++|||||+
T Consensus 276 ~~~C~~~~~~~~---~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 QGSCTSGFQSMG---LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCEEeEEEEeCC---CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 56896 565543 246799999999999999999999999996
No 8
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.8e-54 Score=416.44 Aligned_cols=299 Identities=21% Similarity=0.388 Sum_probs=240.6
Q ss_pred CCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCC----CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 013772 73 PTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCV----QCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDP 148 (436)
Q Consensus 73 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~----~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~ 148 (436)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|. ++..
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~--~~~~y~~~~Ss------T~~~------------ 61 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACW--LHHKYNSSKSS------TYVK------------ 61 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCcccc--CcCcCCcccCc------ceee------------
Confidence 4669999999999999999999999999999998 897 454 35689998883 2222
Q ss_pred CCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCCCC------cHHHHh
Q 013772 149 TQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKGKS------SIVSQL 220 (436)
Q Consensus 149 ~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~------s~~~ql 220 (436)
..|.|.+.|++| ++.|.+++|+|+| |+..++++.|||++.. .+ +.....+||||||++.. +++++|
T Consensus 62 ~~~~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~-~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 62 NGTEFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQ-PGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred CCcEEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeec-cCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 357899999999 6899999999999 5677899999999875 33 33456899999998754 578899
Q ss_pred hhcccc-ceeeEEEeCCC----CCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEecc-CCCCEEEec
Q 013772 221 HSQKLI-RNVVGHCLSGR----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGL-KNLPVVFDS 292 (436)
Q Consensus 221 ~~~g~i-~~~Fs~~l~~~----~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~-~~~~~iiDS 292 (436)
++||.| +++||+||.++ ..|+|+||+.+ ++.+++.|+|+.. ..+|.|.+++|+|++..... ....+||||
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~--~~~w~v~l~~i~vg~~~~~~~~~~~aiiDS 213 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR--KAYWQIHMDQVDVGSGLTLCKGGCEAIVDT 213 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc--ceEEEEEeeEEEECCeeeecCCCCEEEECC
Confidence 999999 89999999742 36999999865 4678999999964 48999999999999875432 346899999
Q ss_pred cccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCcee
Q 013772 293 GSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAY 372 (436)
Q Consensus 293 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y 372 (436)
||+++++|++++++|.+++.+. ... ...+..+|+... .+|+|+|+|++ ..++|+|++|
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~------~~~-~~~~~~~C~~~~-----------~~P~i~f~fgg----~~~~l~~~~y 271 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAV------PLI-QGEYMIDCEKIP-----------TLPVISFSLGG----KVYPLTGEDY 271 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCc------ccc-CCCEEecccccc-----------cCCCEEEEECC----EEEEEChHHe
Confidence 9999999999999999888542 111 222344697532 37999999986 9999999999
Q ss_pred EEEeC--CCeEEE-EEEeCCc-CCCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 373 LIISN--RGNVCL-GILNGAE-VGLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 373 ~~~~~--~~~~Cl-~~~~~~~-~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
+++.. ....|+ +++.... ....+.||||+.|||++|+|||++++|||||+
T Consensus 272 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 272 ILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 98653 235796 5654321 11245899999999999999999999999996
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.1e-54 Score=416.41 Aligned_cols=294 Identities=20% Similarity=0.377 Sum_probs=238.3
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceEEecCCCCC--CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeee
Q 013772 77 YNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCV--QCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYE 154 (436)
Q Consensus 77 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~--~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~ 154 (436)
|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|. +|.. ..|.|.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~--~~~~y~~~~Ss------T~~~------------~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACT--KHNRFQPSESS------TYVS------------NGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccC--ccceECCCCCc------cccc------------CCcEEE
Confidence 899999999999999999999999999998 897 465 45789998883 2322 467999
Q ss_pred eeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCCCC------cHHHHhhhcccc
Q 013772 155 VEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKGKS------SIVSQLHSQKLI 226 (436)
Q Consensus 155 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~------s~~~ql~~~g~i 226 (436)
+.|++| ++.|.+++|+|+| ++..+.++.|||+..+ .+ +.....+||||||++.. +++++|++||+|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~-~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSE-PGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred EEeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeecc-CcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 999999 6899999999999 5678899999998765 33 33457899999998754 368999999999
Q ss_pred -ceeeEEEeCCC----CCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEecc-CCCCEEEeccccccc
Q 013772 227 -RNVVGHCLSGR----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGL-KNLPVVFDSGSSYTY 298 (436)
Q Consensus 227 -~~~Fs~~l~~~----~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~-~~~~~iiDSGTt~~~ 298 (436)
+++||+||.++ ..|.|+||+.+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+.. ....+||||||++++
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~--~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~ 211 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV--QGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLIT 211 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC--ceEEEEEeeEEEEecceEecCCCCEEEECCCcchhh
Confidence 89999999842 46999999875 5679999999974 48999999999999987654 346899999999999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEe--
Q 013772 299 LSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIIS-- 376 (436)
Q Consensus 299 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~-- 376 (436)
+|++++++|.+++.+.. . ...+..+|.... .+|+|+|+|++ ..++|+|++|++..
T Consensus 212 lP~~~~~~l~~~~~~~~-------~-~~~~~~~C~~~~-----------~~p~i~f~f~g----~~~~l~~~~y~~~~~~ 268 (316)
T cd05486 212 GPSGDIKQLQNYIGATA-------T-DGEYGVDCSTLS-----------LMPSVTFTING----IPYSLSPQAYTLEDQS 268 (316)
T ss_pred cCHHHHHHHHHHhCCcc-------c-CCcEEEeccccc-----------cCCCEEEEECC----EEEEeCHHHeEEeccc
Confidence 99999999888774321 1 122233586532 37999999985 99999999999864
Q ss_pred CCCeEEE-EEEeCCc-CCCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 377 NRGNVCL-GILNGAE-VGLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 377 ~~~~~Cl-~~~~~~~-~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
..+..|+ +++.... ....+.||||+.|||++|+|||.+++|||||+
T Consensus 269 ~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 269 DGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 2346895 5654321 11245799999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-53 Score=411.12 Aligned_cols=298 Identities=23% Similarity=0.439 Sum_probs=242.6
Q ss_pred eeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeee
Q 013772 75 GYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYE 154 (436)
Q Consensus 75 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~ 154 (436)
..|+++|.||||||++.|+|||||+++||+|. .|..|....++.|+|++|. +|.. ..|.|+
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~Ss------T~~~------------~~~~~~ 62 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSS------TYST------------NGETFS 62 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCC------CceE------------CCcEEE
Confidence 47999999999999999999999999999998 8974322346789999883 2222 467999
Q ss_pred eeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCC------CCcHHHHhhhcccc
Q 013772 155 VEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKG------KSSIVSQLHSQKLI 226 (436)
Q Consensus 155 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~------~~s~~~ql~~~g~i 226 (436)
+.|++| ++.|.+++|+|++ |+..++++.|||++.. .+ +.....+||||||++ ..+++++|+++|.|
T Consensus 63 ~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~-~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i 136 (318)
T cd05477 63 LQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETE-PGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLL 136 (318)
T ss_pred EEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEec-ccccccccceeeEeecCcccccccCCCCHHHHHHhcCCc
Confidence 999999 6899999999999 5678899999999875 33 333568999999986 35799999999999
Q ss_pred -ceeeEEEeCCC---CCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEecc--CCCCEEEeccccccc
Q 013772 227 -RNVVGHCLSGR---GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGL--KNLPVVFDSGSSYTY 298 (436)
Q Consensus 227 -~~~Fs~~l~~~---~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~--~~~~~iiDSGTt~~~ 298 (436)
+++||+||.+. ..|.|+||+.+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+.. .+..+||||||++++
T Consensus 137 ~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~ 214 (318)
T cd05477 137 QAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS--ETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLT 214 (318)
T ss_pred CCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC--ceEEEEEeeEEEECCEEecccCCCceeeECCCCccEE
Confidence 89999999853 46999999875 5668999999964 48999999999999988653 245799999999999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCC
Q 013772 299 LSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNR 378 (436)
Q Consensus 299 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~ 378 (436)
+|++++++|++++.+.... ......+|.... .+|+|+|+|++ +++.|++++|+...
T Consensus 215 lP~~~~~~l~~~~~~~~~~-------~~~~~~~C~~~~-----------~~p~l~~~f~g----~~~~v~~~~y~~~~-- 270 (318)
T cd05477 215 APQQVMSTLMQSIGAQQDQ-------YGQYVVNCNNIQ-----------NLPTLTFTING----VSFPLPPSAYILQN-- 270 (318)
T ss_pred CCHHHHHHHHHHhCCcccc-------CCCEEEeCCccc-----------cCCcEEEEECC----EEEEECHHHeEecC--
Confidence 9999999999988654321 122334587532 37999999986 99999999999864
Q ss_pred CeEE-EEEEeCCcC--CCCCceeeChhhhcceEEEEECCCCEEEEEeC
Q 013772 379 GNVC-LGILNGAEV--GLQDLNVIGDISMQDRVVIYDNEKQRIGWMPA 423 (436)
Q Consensus 379 ~~~C-l~~~~~~~~--~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~ 423 (436)
...| +++.+.... ...+.||||+.|||++|+|||++++|||||++
T Consensus 271 ~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 4568 577653211 11357999999999999999999999999985
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.9e-53 Score=410.33 Aligned_cols=297 Identities=22% Similarity=0.391 Sum_probs=240.9
Q ss_pred CCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCC--CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 013772 73 PTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCV--QCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQ 150 (436)
Q Consensus 73 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~--~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~ 150 (436)
.+..|+++|+||||+|++.|+|||||+++||+|. +|. .|. .++.|+|++|. +|.. ..
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~--~~~~y~~~~Ss------t~~~------------~~ 65 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACF--LHSKYDSSASS------TYKA------------NG 65 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccC--CcceECCCCCc------ceee------------CC
Confidence 4668999999999999999999999999999999 897 465 45689998883 2222 46
Q ss_pred CeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCCCCc------HHHHhhh
Q 013772 151 CDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKGKSS------IVSQLHS 222 (436)
Q Consensus 151 ~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~ 222 (436)
|.|.+.|++| +++|.+++|+|++ ++..++++.|||++.. .+ +.....+||||||++..+ .+.+|++
T Consensus 66 ~~~~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~-~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 66 TEFKIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSE-PGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CEEEEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecC-CCcceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 7999999999 5899999999999 5677889999999875 44 234468999999998643 5568999
Q ss_pred cccc-ceeeEEEeCC--CCCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccCCCCEEEecccccc
Q 013772 223 QKLI-RNVVGHCLSG--RGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLKNLPVVFDSGSSYT 297 (436)
Q Consensus 223 ~g~i-~~~Fs~~l~~--~~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~~~~iiDSGTt~~ 297 (436)
||.| +++||+||.+ ...|.|+||+.+ ++.++++|+|+.. ..+|.|.+++|+||++.+...+..++|||||+++
T Consensus 140 qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~--~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~ 217 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR--KAYWEVELEKIGLGDEELELENTGAAIDTGTSLI 217 (320)
T ss_pred cCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc--CcEEEEEeCeEEECCEEeccCCCeEEEcCCcccc
Confidence 9999 8999999985 357999999875 4578999999974 4799999999999999887777899999999999
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeC
Q 013772 298 YLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISN 377 (436)
Q Consensus 298 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~ 377 (436)
++|+++++++.+++.+... ....+. .+|++.. .+|.|+|+|++ .++.|+|++|+++.
T Consensus 218 ~lp~~~~~~l~~~~~~~~~------~~~~~~-~~C~~~~-----------~~P~i~f~f~g----~~~~i~~~~y~~~~- 274 (320)
T cd05488 218 ALPSDLAEMLNAEIGAKKS------WNGQYT-VDCSKVD-----------SLPDLTFNFDG----YNFTLGPFDYTLEV- 274 (320)
T ss_pred cCCHHHHHHHHHHhCCccc------cCCcEE-eeccccc-----------cCCCEEEEECC----EEEEECHHHheecC-
Confidence 9999999998888754321 112222 3587532 37999999986 99999999999853
Q ss_pred CCeEEEEEEeCCc-C-CCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 378 RGNVCLGILNGAE-V-GLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 378 ~~~~Cl~~~~~~~-~-~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
+..|+..+.... . ...+.||||+.|||++|+|||++++|||||+
T Consensus 275 -~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 -SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred -CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 346965443221 1 1234799999999999999999999999996
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.1e-53 Score=409.05 Aligned_cols=302 Identities=19% Similarity=0.304 Sum_probs=241.4
Q ss_pred cCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCC--CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 013772 72 YPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQC--VEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPT 149 (436)
Q Consensus 72 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C--~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~ 149 (436)
+.+..|+++|+||||+|++.|+|||||+++||+|. .|..| ....++.|+|++|. +|+. .
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss------T~~~------------~ 64 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS------TYKE------------N 64 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe------eeeE------------C
Confidence 34679999999999999999999999999999998 88752 12346689998882 3433 4
Q ss_pred CCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecC-CCCCCCCCceeeeecCCCC------cHHHHhhh
Q 013772 150 QCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQV-PGASYHPLDGILGLGKGKS------SIVSQLHS 222 (436)
Q Consensus 150 ~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~-~~~~~~~~~GIlGLg~~~~------s~~~ql~~ 222 (436)
.|.|++.|++| ++.|.+++|+|+++ +..+ ++.||++.... ..+.....+||||||++.. +++++|++
T Consensus 65 ~~~~~~~Yg~g-~~~G~~~~D~v~~g----~~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 65 GTEFTIHYASG-TVKGFLSQDIVTVG----GIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CEEEEEEeCCc-eEEEEEeeeEEEEC----CEEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 67999999999 69999999999994 4444 47899998741 1233456899999998753 57889999
Q ss_pred cccc-ceeeEEEeCC----CCCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccC-CCCEEEeccc
Q 013772 223 QKLI-RNVVGHCLSG----RGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLK-NLPVVFDSGS 294 (436)
Q Consensus 223 ~g~i-~~~Fs~~l~~----~~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~-~~~~iiDSGT 294 (436)
||.| +++||+||.+ ...|.|+||+.+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+... +..++|||||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~--~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGt 216 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK--TGFWQIQMKGVSVGSSTLLCEDGCTAVVDTGA 216 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc--CceEEEEecEEEECCEEEecCCCCEEEECCCc
Confidence 9999 8999999984 247999999875 4678999999864 479999999999999987543 3679999999
Q ss_pred cccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEE
Q 013772 295 SYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLI 374 (436)
Q Consensus 295 t~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~ 374 (436)
+++++|.++++++++++.+... ...+..+|+... .+|+|+|+|++ ..++|++++|++
T Consensus 217 s~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~~~-----------~~P~i~f~fgg----~~~~v~~~~yi~ 273 (326)
T cd05487 217 SFISGPTSSISKLMEALGAKER--------LGDYVVKCNEVP-----------TLPDISFHLGG----KEYTLSSSDYVL 273 (326)
T ss_pred cchhCcHHHHHHHHHHhCCccc--------CCCEEEeccccC-----------CCCCEEEEECC----EEEEeCHHHhEE
Confidence 9999999999999988854321 122344697532 37999999975 999999999998
Q ss_pred EeCC--CeEE-EEEEeCCcC-CCCCceeeChhhhcceEEEEECCCCEEEEEeC
Q 013772 375 ISNR--GNVC-LGILNGAEV-GLQDLNVIGDISMQDRVVIYDNEKQRIGWMPA 423 (436)
Q Consensus 375 ~~~~--~~~C-l~~~~~~~~-~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~ 423 (436)
+..+ +..| ++++..+.. ...+.||||+.|||++|+|||++++|||||++
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 7543 4578 467654311 12357999999999999999999999999985
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.7e-53 Score=406.26 Aligned_cols=288 Identities=23% Similarity=0.398 Sum_probs=233.7
Q ss_pred cCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCC---CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 013772 72 YPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCV---QCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDP 148 (436)
Q Consensus 72 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~---~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~ 148 (436)
+.+..|+++|+||||+|++.|+|||||+++||+|. .|. .|.. ++.|+|++|. +|+.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~~--~~~y~~~~Ss------T~~~------------ 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACYF--HSKYKSSKSS------TYKK------------ 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCccccc--cCcCCcccCC------Cccc------------
Confidence 45779999999999999999999999999999998 896 6864 5689999883 2322
Q ss_pred CCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCCCC------cHHHHh
Q 013772 149 TQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKGKS------SIVSQL 220 (436)
Q Consensus 149 ~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~------s~~~ql 220 (436)
..+.+.+.|++| .+.|.+++|+|+| |+..++++.||+++.+ .+ +.....+||||||++.. +++.+|
T Consensus 65 ~~~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~-~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 138 (317)
T cd06098 65 NGTSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKE-PGLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 138 (317)
T ss_pred CCCEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEec-CCccccccccceeccccccchhhcCCCCHHHHH
Confidence 245889999999 6899999999999 5677899999999875 33 44567899999998754 477899
Q ss_pred hhcccc-ceeeEEEeCCC----CCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEecc--CCCCEEEe
Q 013772 221 HSQKLI-RNVVGHCLSGR----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGL--KNLPVVFD 291 (436)
Q Consensus 221 ~~~g~i-~~~Fs~~l~~~----~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~--~~~~~iiD 291 (436)
++||+| +++||+||.+. ..|.|+||+.+ ++.+++.|+|+.. ..||.|.+++|+|+++.+.. ....++||
T Consensus 139 ~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~~~~aivD 216 (317)
T cd06098 139 VEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR--KGYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216 (317)
T ss_pred HhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc--CcEEEEEeCeEEECCEEeeecCCCcEEEEe
Confidence 999999 88999999742 47999999875 5679999999974 47999999999999987654 23679999
Q ss_pred ccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCce
Q 013772 292 SGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEA 371 (436)
Q Consensus 292 SGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~ 371 (436)
|||+++++|+++++++. +. .+|+... .+|+|+|+|++ ..+.|+|++
T Consensus 217 TGTs~~~lP~~~~~~i~------------------~~-~~C~~~~-----------~~P~i~f~f~g----~~~~l~~~~ 262 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN------------------SA-VDCNSLS-----------SMPNVSFTIGG----KTFELTPEQ 262 (317)
T ss_pred cCCcceeCCHHHHHhhh------------------cc-CCccccc-----------cCCcEEEEECC----EEEEEChHH
Confidence 99999999997665442 11 2487532 37999999975 999999999
Q ss_pred eEEEeCC--CeEEE-EEEeCCcC-CCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 372 YLIISNR--GNVCL-GILNGAEV-GLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 372 y~~~~~~--~~~Cl-~~~~~~~~-~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
|+++..+ ...|+ +++..... ...+.||||+.|||++|+|||++++|||||+
T Consensus 263 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 263 YILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred eEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9986543 35895 56543211 1235799999999999999999999999995
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.3e-53 Score=417.00 Aligned_cols=308 Identities=19% Similarity=0.286 Sum_probs=243.9
Q ss_pred CcceEEEEeecccCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC
Q 013772 60 GSSLLFRVQGNVYPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHA 139 (436)
Q Consensus 60 ~~~~~~~l~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~ 139 (436)
.....+||.. +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|||++|. +|..
T Consensus 125 ~~~~~v~L~n--~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss------T~~~--- 192 (453)
T PTZ00147 125 SEFDNVELKD--LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK------TYEK--- 192 (453)
T ss_pred CCCCeeeccc--cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc------ceEE---
Confidence 4456677763 35679999999999999999999999999999998 8985444456789999883 3333
Q ss_pred CCCCCCCCCCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCC----CCCCCceeeeecCCCC-
Q 013772 140 PGQHKCEDPTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGA----SYHPLDGILGLGKGKS- 214 (436)
Q Consensus 140 ~~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~----~~~~~~GIlGLg~~~~- 214 (436)
..+.|++.|++| ++.|.+++|+|+| |+..++ ..|+++... .++ .....|||||||++..
T Consensus 193 ---------~~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~-~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 193 ---------DGTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDT-NGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred ---------CCCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEec-cCcccccccccccceecccCCccc
Confidence 356899999999 6999999999999 555565 579988764 332 3346899999999864
Q ss_pred -----cHHHHhhhcccc-ceeeEEEeCC--CCCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccC
Q 013772 215 -----SIVSQLHSQKLI-RNVVGHCLSG--RGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLK 284 (436)
Q Consensus 215 -----s~~~ql~~~g~i-~~~Fs~~l~~--~~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~ 284 (436)
+++.+|++|++| +++||+||++ ...|.|+||+.+ ++.+++.|+|+.. ..+|.|.++ +.+++.. ..
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~--~~~W~V~l~-~~vg~~~--~~ 331 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH--DLYWQVDLD-VHFGNVS--SE 331 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC--CceEEEEEE-EEECCEe--cC
Confidence 478899999999 8899999984 357999999876 4579999999963 489999998 5777654 24
Q ss_pred CCCEEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceE
Q 013772 285 NLPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTL 364 (436)
Q Consensus 285 ~~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~ 364 (436)
...+|+||||+++++|+++++++.+++.+... +. ......+|+.. .+|+|+|.|++ ..
T Consensus 332 ~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~~--~~~y~~~C~~~------------~lP~~~f~f~g----~~ 389 (453)
T PTZ00147 332 KANVIVDSGTSVITVPTEFLNKFVESLDVFKV----PF--LPLYVTTCNNT------------KLPTLEFRSPN----KV 389 (453)
T ss_pred ceeEEECCCCchhcCCHHHHHHHHHHhCCeec----CC--CCeEEEeCCCC------------CCCeEEEEECC----EE
Confidence 57899999999999999999999988854211 11 12234468742 37999999986 99
Q ss_pred EEEcCceeEEEeC--CCeEEE-EEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCC
Q 013772 365 FELTTEAYLIISN--RGNVCL-GILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPAN 424 (436)
Q Consensus 365 ~~i~~~~y~~~~~--~~~~Cl-~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~ 424 (436)
++|+|++|+.+.. ....|+ +++.... ..+.||||++|||++|+|||++++|||||+++
T Consensus 390 ~~L~p~~yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 390 YTLEPEYYLQPIEDIGSALCMLNIIPIDL--EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECHHHheeccccCCCcEEEEEEEECCC--CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999999997532 234795 6776431 23579999999999999999999999999986
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.2e-52 Score=405.95 Aligned_cols=300 Identities=20% Similarity=0.365 Sum_probs=243.2
Q ss_pred cCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCC----CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 013772 72 YPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCV----QCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCED 147 (436)
Q Consensus 72 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~----~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~ 147 (436)
+.+..|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|. +|..
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss------t~~~----------- 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACL--LHNKYDSTKSS------TYKK----------- 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCcccc--CCCeECCcCCC------CeEE-----------
Confidence 35679999999999999999999999999999998 897 464 35679998883 3332
Q ss_pred CCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCCCCc------HHHH
Q 013772 148 PTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKGKSS------IVSQ 219 (436)
Q Consensus 148 ~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~q 219 (436)
..|.|.+.|++| ++.|.+++|+|+| ++..++++.|||+..+ .+ +.....+||||||++..+ ++.+
T Consensus 67 -~~~~~~i~Y~~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~-~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 67 -NGTEFAIQYGSG-SLSGFLSTDTVSV----GGVSVKGQTFAEAINE-PGLTFVAAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred -CCeEEEEEECCc-eEEEEEecCcEEE----CCEEECCEEEEEEEec-CCccccccccceEEEcCCccccccCCCCHHHH
Confidence 357999999999 5899999999999 5667889999999875 43 334568999999998654 6789
Q ss_pred hhhcccc-ceeeEEEeCCC----CCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccCCCCEEEec
Q 013772 220 LHSQKLI-RNVVGHCLSGR----GGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLKNLPVVFDS 292 (436)
Q Consensus 220 l~~~g~i-~~~Fs~~l~~~----~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~~~~iiDS 292 (436)
|++||+| +++||+||.+. ..|+|+||+.+ ++.+++.|+|+.. ..+|.|.++++.++++.+...+..+||||
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~--~~~~~v~~~~i~v~~~~~~~~~~~~iiDS 217 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR--KGYWQFKMDSVSVGEGEFCSGGCQAIADT 217 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC--ceEEEEEeeEEEECCeeecCCCcEEEEcc
Confidence 9999999 89999999842 46999999875 4568999999974 58999999999999988776667899999
Q ss_pred cccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCcee
Q 013772 293 GSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAY 372 (436)
Q Consensus 293 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y 372 (436)
||+++++|++++++|.+++.+.. + . ...+..+|.... .+|+|+|+|++ +.+.|+|++|
T Consensus 218 Gtt~~~lP~~~~~~l~~~~~~~~----~--~-~~~~~~~C~~~~-----------~~p~i~f~fgg----~~~~i~~~~y 275 (329)
T cd05485 218 GTSLIAGPVDEIEKLNNAIGAKP----I--I-GGEYMVNCSAIP-----------SLPDITFVLGG----KSFSLTGKDY 275 (329)
T ss_pred CCcceeCCHHHHHHHHHHhCCcc----c--c-CCcEEEeccccc-----------cCCcEEEEECC----EEeEEChHHe
Confidence 99999999999999988875421 1 1 122334687532 37999999986 9999999999
Q ss_pred EEEeCC--CeEEE-EEEeCCc-CCCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 373 LIISNR--GNVCL-GILNGAE-VGLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 373 ~~~~~~--~~~Cl-~~~~~~~-~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
+++... ...|+ +++.... ....+.||||+.|||++|+|||++++|||||+
T Consensus 276 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 276 VLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 987532 35796 5665321 11245799999999999999999999999985
No 16
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.4e-52 Score=405.21 Aligned_cols=323 Identities=22% Similarity=0.361 Sum_probs=251.2
Q ss_pred eCCCCce-EEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC---------CCCCCCCCCe
Q 013772 83 VGQPPKP-YFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQ---------HKCEDPTQCD 152 (436)
Q Consensus 83 iGtP~q~-~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~---------~~c~~~~~~~ 152 (436)
+|||-.+ +.|+|||||+++||+|. +|. ...|. .++|+++.|+..+++.. ..|.. +.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCCC-CcCe
Confidence 6888778 99999999999999997 642 22343 38999999987765422 24533 4688
Q ss_pred eeee-eCCCceEEEEEEEEEEEeecCCCC----cCCCceEEeeeeecCCCCCCCCCceeeeecCCCCcHHHHhhhccccc
Q 013772 153 YEVE-YADGGSSLGVLVKDAFAFNYTNGQ----RLNPRLALGCGYDQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 227 (436)
Q Consensus 153 ~~~~-Y~~Gs~~~G~~~~D~v~~~~~~g~----~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~ 227 (436)
|... |++|+...|.+++|+|+|+..+++ .+++++.|||+............|||||||++++|++.||..++.++
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~ 149 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVA 149 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCC
Confidence 8765 889999999999999999765544 26889999999875211123458999999999999999998876668
Q ss_pred eeeEEEeCC--CCCceEEeCCCCC--------CCCCcEEEEcccCC--CCceeeEeeEEEECCEEeccC----------C
Q 013772 228 NVVGHCLSG--RGGGFLFFGDDLY--------DSSRVVWTSMSSDY--TKYYSPGVAELFFGGKTTGLK----------N 285 (436)
Q Consensus 228 ~~Fs~~l~~--~~~G~l~fG~~~~--------~~~~~~~~p~~~~~--~~~~~v~l~~i~v~g~~i~~~----------~ 285 (436)
++||+||.+ ...|.|+||+.+. ..+.+.|+|++.++ ..+|.|.+++|+||++.+.++ .
T Consensus 150 ~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~ 229 (362)
T cd05489 150 RKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP 229 (362)
T ss_pred cceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence 999999985 3579999998652 13789999999753 479999999999999988653 3
Q ss_pred CCEEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEE
Q 013772 286 LPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLF 365 (436)
Q Consensus 286 ~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~ 365 (436)
..+||||||++++||+++|++|.++|.+++........ .....+.||..... ...+....+|+|+|+|+++ +++|
T Consensus 230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~--~~~~~~~~~P~it~~f~g~--g~~~ 304 (362)
T cd05489 230 GGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASAL--GNTRLGYAVPAIDLVLDGG--GVNW 304 (362)
T ss_pred CcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCc--CCcccccccceEEEEEeCC--CeEE
Confidence 58999999999999999999999999988764221111 11123679875421 0111234689999999861 3999
Q ss_pred EEcCceeEEEeCCCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeC
Q 013772 366 ELTTEAYLIISNRGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPA 423 (436)
Q Consensus 366 ~i~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~ 423 (436)
.|+|++|+++..++..|++|...... ..+.||||+.|||++|++||++++|||||+.
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~-~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSE-PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCC-CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999987777899999876421 1357999999999999999999999999975
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.5e-52 Score=409.33 Aligned_cols=307 Identities=20% Similarity=0.298 Sum_probs=239.0
Q ss_pred cceEEEEeecccCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 013772 61 SSLLFRVQGNVYPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAP 140 (436)
Q Consensus 61 ~~~~~~l~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~ 140 (436)
....+++.. +.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+..+.++.|+|++|. +++.
T Consensus 125 ~~~~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss------T~~~---- 191 (450)
T PTZ00013 125 ENDVIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK------SYEK---- 191 (450)
T ss_pred CCCceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc------cccc----
Confidence 444556653 34668999999999999999999999999999998 8974322346789998872 2222
Q ss_pred CCCCCCCCCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC----CCCCCCceeeeecCCCC--
Q 013772 141 GQHKCEDPTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG----ASYHPLDGILGLGKGKS-- 214 (436)
Q Consensus 141 ~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~----~~~~~~~GIlGLg~~~~-- 214 (436)
..|.|.+.|++| ++.|.+++|+|+| |+.+++ ..|+++... .. +.....+||||||++..
T Consensus 192 --------~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~-~~~~~~~~~~~~dGIlGLg~~~~s~ 256 (450)
T PTZ00013 192 --------DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDT-DDLEPIYSSSEFDGILGLGWKDLSI 256 (450)
T ss_pred --------CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEec-cccccceecccccceecccCCcccc
Confidence 357899999999 5999999999999 455555 578888764 21 23346899999999854
Q ss_pred ----cHHHHhhhcccc-ceeeEEEeCC--CCCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccCC
Q 013772 215 ----SIVSQLHSQKLI-RNVVGHCLSG--RGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLKN 285 (436)
Q Consensus 215 ----s~~~ql~~~g~i-~~~Fs~~l~~--~~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~ 285 (436)
+++.+|++||+| +++||+||++ ...|.|+|||.+ ++.+++.|+|+.. ..+|.|.++ +.++.... ..
T Consensus 257 ~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~--~~yW~I~l~-v~~G~~~~--~~ 331 (450)
T PTZ00013 257 GSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH--DLYWQIDLD-VHFGKQTM--QK 331 (450)
T ss_pred ccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc--CceEEEEEE-EEECceec--cc
Confidence 578999999999 8899999984 357999999876 4579999999963 489999997 66765443 35
Q ss_pred CCEEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEE
Q 013772 286 LPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLF 365 (436)
Q Consensus 286 ~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~ 365 (436)
..+++||||+++++|+++++++.+++..... +. ...+..+|+. ..+|+|+|.|++ .++
T Consensus 332 ~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~--~~~y~~~C~~------------~~lP~i~F~~~g----~~~ 389 (450)
T PTZ00013 332 ANVIVDSGTTTITAPSEFLNKFFANLNVIKV----PF--LPFYVTTCDN------------KEMPTLEFKSAN----NTY 389 (450)
T ss_pred cceEECCCCccccCCHHHHHHHHHHhCCeec----CC--CCeEEeecCC------------CCCCeEEEEECC----EEE
Confidence 7899999999999999999988887753211 11 1223446864 237999999986 999
Q ss_pred EEcCceeEEEe--CCCeEEE-EEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCC
Q 013772 366 ELTTEAYLIIS--NRGNVCL-GILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPAN 424 (436)
Q Consensus 366 ~i~~~~y~~~~--~~~~~Cl-~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~ 424 (436)
+|+|++|+.+. .++..|+ ++.+... ..+.||||++|||++|+|||++++|||||+++
T Consensus 390 ~L~p~~Yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 390 TLEPEYYMNPLLDVDDTLCMITMLPVDI--DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EECHHHheehhccCCCCeeEEEEEECCC--CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99999998743 2346895 6665431 23579999999999999999999999999985
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.2e-51 Score=404.48 Aligned_cols=317 Identities=19% Similarity=0.275 Sum_probs=238.1
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeee
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEV 155 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~ 155 (436)
.|+++|.||||+|++.|+|||||+++||+|. +|..| ++.|+|++|. +|+. ..|.|++
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~~----~~~f~~~~Ss------T~~~------------~~~~~~i 59 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPFI----HTYFHRELSS------TYRD------------LGKGVTV 59 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCccc----cccCCchhCc------Cccc------------CCceEEE
Confidence 6999999999999999999999999999998 77433 5689999883 3332 4679999
Q ss_pred eeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCC--CCCCCceeeeecCCCC--------cHHHHhhhccc
Q 013772 156 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGA--SYHPLDGILGLGKGKS--------SIVSQLHSQKL 225 (436)
Q Consensus 156 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~--~~~~~~GIlGLg~~~~--------s~~~ql~~~g~ 225 (436)
.|++| ++.|.+++|+|+|+. .......+.|+++... .++ .....+||||||++.+ +++++|.+|+.
T Consensus 60 ~Yg~G-s~~G~~~~D~v~ig~--~~~~~~~~~~~~~~~~-~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~ 135 (364)
T cd05473 60 PYTQG-SWEGELGTDLVSIPK--GPNVTFRANIAAITES-ENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTG 135 (364)
T ss_pred EECcc-eEEEEEEEEEEEECC--CCccceEEeeEEEecc-ccceecccccceeeeecccccccCCCCCCCHHHHHHhccC
Confidence 99999 689999999999953 1111122345666543 332 1235799999998754 57889999988
Q ss_pred cceeeEEEeCC-----------CCCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccCC-----CC
Q 013772 226 IRNVVGHCLSG-----------RGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLKN-----LP 287 (436)
Q Consensus 226 i~~~Fs~~l~~-----------~~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~-----~~ 287 (436)
++++||+||.. ...|.|+||+.+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+.... ..
T Consensus 136 ~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~--~~~~~v~l~~i~vg~~~~~~~~~~~~~~~ 213 (364)
T cd05473 136 IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE--EWYYEVIILKLEVGGQSLNLDCKEYNYDK 213 (364)
T ss_pred CccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc--ceeEEEEEEEEEECCEecccccccccCcc
Confidence 88899998731 236999999875 5678999999974 3799999999999999876532 36
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCC--CcceEE
Q 013772 288 VVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDG--KTRTLF 365 (436)
Q Consensus 288 ~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g--~~~~~~ 365 (436)
+|+||||++++||+++|++|.+++.++......+.........+|+.... .....+|+|+|+|++. +...++
T Consensus 214 ~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 214 AIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT------TPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred EEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC------chHhhCCcEEEEEccCCCCceEEE
Confidence 99999999999999999999999988754211111000111246976431 0123589999999852 123688
Q ss_pred EEcCceeEEEeC---CCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCCCCCCcc
Q 013772 366 ELTTEAYLIISN---RGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPANCDRIPK 430 (436)
Q Consensus 366 ~i~~~~y~~~~~---~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c~~~~~ 430 (436)
.|+|++|+.... .+..|+++.... ..+.||||+.|||++|+|||++++|||||+++|...+.
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~---~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~ 352 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQ---STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDG 352 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeec---CCCceEEeeeeEcceEEEEECCCCEEeeEecccccccC
Confidence 999999997542 245897543322 13569999999999999999999999999999987653
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.9e-51 Score=382.18 Aligned_cols=246 Identities=41% Similarity=0.732 Sum_probs=215.9
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeee
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEV 155 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~ 155 (436)
.|+++|+||||+|++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 499999999999999999999999999974 15788
Q ss_pred eeCCCceEEEEEEEEEEEeecCCCCc--CCCceEEeeeeecCCCCCCCCCceeeeecCCCCcHHHHhhhccccceeeEEE
Q 013772 156 EYADGGSSLGVLVKDAFAFNYTNGQR--LNPRLALGCGYDQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHC 233 (436)
Q Consensus 156 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~--~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~~ 233 (436)
.|+||+.++|.+++|+|+|+ +. .++++.|||++.. .++.....+||||||+...|++.||..++ ++||+|
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g----~~~~~~~~~~Fg~~~~~-~~~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~ 107 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFG----DSSVSVPNVAFGCGTDN-EGGSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYC 107 (265)
T ss_pred EeCCCceeeeeEEEEEEEec----CCCCccCCEEEEecccc-cCCccCCCCEEEECCCCcccHHHHhhccc---CeeEEE
Confidence 99999899999999999994 44 7899999999986 44556679999999999999999999887 899999
Q ss_pred eCC----CCCceEEeCCCCC-CCCCcEEEEcccCC--CCceeeEeeEEEECCEEecc----------CCCCEEEeccccc
Q 013772 234 LSG----RGGGFLFFGDDLY-DSSRVVWTSMSSDY--TKYYSPGVAELFFGGKTTGL----------KNLPVVFDSGSSY 296 (436)
Q Consensus 234 l~~----~~~G~l~fG~~~~-~~~~~~~~p~~~~~--~~~~~v~l~~i~v~g~~i~~----------~~~~~iiDSGTt~ 296 (436)
|.+ ...|+|+||+.+. +.+++.|+|++.++ ..+|.|.+++|+|+++.+.+ ....++|||||++
T Consensus 108 l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~ 187 (265)
T cd05476 108 LVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTL 187 (265)
T ss_pred ccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcc
Confidence 984 4579999998753 57899999998653 58999999999999998752 3478999999999
Q ss_pred cccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEe
Q 013772 297 TYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIIS 376 (436)
Q Consensus 297 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~ 376 (436)
++||+++| |+|+|+|++ +.++.+++++|+++.
T Consensus 188 ~~lp~~~~---------------------------------------------P~i~~~f~~---~~~~~i~~~~y~~~~ 219 (265)
T cd05476 188 TYLPDPAY---------------------------------------------PDLTLHFDG---GADLELPPENYFVDV 219 (265)
T ss_pred eEcCcccc---------------------------------------------CCEEEEECC---CCEEEeCcccEEEEC
Confidence 99999654 578999995 399999999999976
Q ss_pred CCCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCCC
Q 013772 377 NRGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPANC 425 (436)
Q Consensus 377 ~~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~c 425 (436)
.++..|+++.... ..+.||||++|||++|++||++++|||||+++|
T Consensus 220 ~~~~~C~~~~~~~---~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 220 GEGVVCLAILSSS---SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCCEEEEEecCC---CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 7778999998763 357899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.2e-49 Score=376.58 Aligned_cols=265 Identities=21% Similarity=0.367 Sum_probs=217.0
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeeee
Q 013772 77 YNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEVE 156 (436)
Q Consensus 77 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~~ 156 (436)
|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++|. +|... ..|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss------t~~~~-----------~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS------TAKLL-----------PGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc------cceec-----------CCcEEEEE
Confidence 789999999999999999999999999999 9999988788889998872 22221 35789999
Q ss_pred eCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC-CCCCCCceeeeecCCCC---------cHHHHhhhcccc
Q 013772 157 YADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG-ASYHPLDGILGLGKGKS---------SIVSQLHSQKLI 226 (436)
Q Consensus 157 Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~---------s~~~ql~~~g~i 226 (436)
|++|+.+.|.+++|+|+| |+.+++++.||+++..... +.....+||||||++.. +++++|.+++.
T Consensus 63 Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~- 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD- 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-
Confidence 999977999999999999 5677899999999886221 34467999999998743 47778888865
Q ss_pred ceeeEEEeCCCCCceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCEE-eccCCCCEEEeccccccccCHHH
Q 013772 227 RNVVGHCLSGRGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGKT-TGLKNLPVVFDSGSSYTYLSHVA 303 (436)
Q Consensus 227 ~~~Fs~~l~~~~~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~-i~~~~~~~iiDSGTt~~~lp~~~ 303 (436)
+++||+||.+...|.|+||+.+ ++.+++.|+|+... ..+|.|.+++|+|+++. ....+..++|||||+++++|+++
T Consensus 138 ~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 138 APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS-SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC-CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 8999999997678999999876 46799999999742 58999999999999873 33346789999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCCCeEEE
Q 013772 304 YQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNRGNVCL 383 (436)
Q Consensus 304 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~~~~Cl 383 (436)
++++.+++.+.. +... ...+..+|.. .+|+|+|+|
T Consensus 217 ~~~l~~~l~g~~----~~~~-~~~~~~~C~~-------------~~P~i~f~~--------------------------- 251 (278)
T cd06097 217 VEAYYSQVPGAY----YDSE-YGGWVFPCDT-------------TLPDLSFAV--------------------------- 251 (278)
T ss_pred HHHHHHhCcCCc----ccCC-CCEEEEECCC-------------CCCCEEEEE---------------------------
Confidence 999988884221 1111 1222345753 168887777
Q ss_pred EEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 384 GILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 384 ~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 499999999999999999999999995
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.7e-49 Score=376.23 Aligned_cols=265 Identities=25% Similarity=0.420 Sum_probs=225.0
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeee
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEV 155 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~ 155 (436)
.|+++|.||||+|++.|+|||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999997 2678
Q ss_pred eeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCCCCCCCceeeeecCCCC-----------cHHHHhhhcc
Q 013772 156 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGASYHPLDGILGLGKGKS-----------SIVSQLHSQK 224 (436)
Q Consensus 156 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~g 224 (436)
.|++|+.+.|.+++|+|+| ++..+.++.|||+++. ...+||||||+.+. +|++||++||
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSI----GGATVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEE----CCeEecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 8999889999999999999 4567889999999873 35799999999875 7999999999
Q ss_pred cc-ceeeEEEeCC--CCCceEEeCCCC--CCCCCcEEEEcccCCC----CceeeEeeEEEECCEEec----cCCCCEEEe
Q 013772 225 LI-RNVVGHCLSG--RGGGFLFFGDDL--YDSSRVVWTSMSSDYT----KYYSPGVAELFFGGKTTG----LKNLPVVFD 291 (436)
Q Consensus 225 ~i-~~~Fs~~l~~--~~~G~l~fG~~~--~~~~~~~~~p~~~~~~----~~~~v~l~~i~v~g~~i~----~~~~~~iiD 291 (436)
+| +++||+||.+ ...|.|+||+.+ ++.+++.|+|+..... .+|.|.+++|.++++.+. .....++||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiD 184 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLD 184 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEEC
Confidence 99 8999999985 367999999865 4568999999997543 799999999999998753 335799999
Q ss_pred ccccccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCce
Q 013772 292 SGSSYTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEA 371 (436)
Q Consensus 292 SGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~ 371 (436)
|||++++||++++++|.+++.+.... . ......+|+... . |+|+|+|++ .++.||+++
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~~-----~-~~~~~~~C~~~~-----------~-p~i~f~f~g----~~~~i~~~~ 242 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYDS-----D-EGLYVVDCDAKD-----------D-GSLTFNFGG----ATISVPLSD 242 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEcC-----C-CcEEEEeCCCCC-----------C-CEEEEEECC----eEEEEEHHH
Confidence 99999999999999999999765431 1 223345687532 2 999999986 999999999
Q ss_pred eEEEeC----CCeEE-EEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeC
Q 013772 372 YLIISN----RGNVC-LGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPA 423 (436)
Q Consensus 372 y~~~~~----~~~~C-l~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~ 423 (436)
|+++.. .+..| +++.+.. .+.||||++|||++|++||.+++|||||++
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPST----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCC----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 998764 24567 6887754 268999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1e-48 Score=377.81 Aligned_cols=298 Identities=27% Similarity=0.474 Sum_probs=241.8
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCC-CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeee
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQC-VEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYE 154 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C-~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~ 154 (436)
+|+++|.||||+|++.|++||||+++||++. .|..| .......|++.+|. +|.. ..+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~------t~~~------------~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS------TFSN------------QGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST------TEEE------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc------cccc------------ceeeee
Confidence 5999999999999999999999999999998 88876 33455688887662 2332 245799
Q ss_pred eeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeeecCC-------CCcHHHHhhhccc
Q 013772 155 VEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGLGKG-------KSSIVSQLHSQKL 225 (436)
Q Consensus 155 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGLg~~-------~~s~~~ql~~~g~ 225 (436)
+.|++|+ ++|.+++|+|+| ++..+.++.||++... .+ +.....+||||||++ ..+++.+|+++|.
T Consensus 62 ~~y~~g~-~~G~~~~D~v~i----g~~~~~~~~f~~~~~~-~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSI----GGLTIPNQTFGLADSY-SGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEE----TTEEEEEEEEEEEEEE-ESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred eeccCcc-cccccccceEee----eeccccccceeccccc-cccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 9999995 999999999999 6677889999999984 23 345679999999975 2579999999999
Q ss_pred c-ceeeEEEeCCCC--CceEEeCCCC--CCCCCcEEEEcccCCCCceeeEeeEEEECCE-EeccCCCCEEEecccccccc
Q 013772 226 I-RNVVGHCLSGRG--GGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGK-TTGLKNLPVVFDSGSSYTYL 299 (436)
Q Consensus 226 i-~~~Fs~~l~~~~--~G~l~fG~~~--~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~-~i~~~~~~~iiDSGTt~~~l 299 (436)
| +++||++|.+.. .|.|+||+.+ ++.+++.|+|+. ...+|.+.+.+|.+++. ........++|||||++++|
T Consensus 136 i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~--~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~l 213 (317)
T PF00026_consen 136 ISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV--SSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYL 213 (317)
T ss_dssp SSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS--STTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEE
T ss_pred ccccccceeeeecccccchheeeccccccccCceeccCcc--cccccccccccccccccccccccceeeecccccccccc
Confidence 9 899999998643 7999999875 456899999998 45899999999999998 44444468999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCCC
Q 013772 300 SHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNRG 379 (436)
Q Consensus 300 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~~ 379 (436)
|.+++++|++.+...... .....+|... ..+|.|+|.|++ .++.|+|++|+.+..+.
T Consensus 214 p~~~~~~i~~~l~~~~~~--------~~~~~~c~~~-----------~~~p~l~f~~~~----~~~~i~~~~~~~~~~~~ 270 (317)
T PF00026_consen 214 PRSIFDAIIKALGGSYSD--------GVYSVPCNST-----------DSLPDLTFTFGG----VTFTIPPSDYIFKIEDG 270 (317)
T ss_dssp EHHHHHHHHHHHTTEEEC--------SEEEEETTGG-----------GGSEEEEEEETT----EEEEEEHHHHEEEESST
T ss_pred cchhhHHHHhhhcccccc--------eeEEEecccc-----------cccceEEEeeCC----EEEEecchHhccccccc
Confidence 999999999999775541 2233458543 247999999996 99999999999987554
Q ss_pred --eEE-EEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeC
Q 013772 380 --NVC-LGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPA 423 (436)
Q Consensus 380 --~~C-l~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~ 423 (436)
..| ++|.........+.+|||.+|||++|++||.|++|||||++
T Consensus 271 ~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 271 NGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 378 56665221224678999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.3e-46 Score=352.45 Aligned_cols=266 Identities=28% Similarity=0.504 Sum_probs=219.4
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeee
Q 013772 77 YNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPL--YRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYE 154 (436)
Q Consensus 77 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~--y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~ 154 (436)
|+++|.||+|+|++.|+|||||+++||+|. .|..|..+.... |++..|. .|. ...|.|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~------~~~------------~~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS------TYK------------DTGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc------eee------------cCCCEEE
Confidence 789999999999999999999999999999 999887655544 4444431 111 2578999
Q ss_pred eeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCCCCCCCceeeeecCCC------CcHHHHhhhcccc-c
Q 013772 155 VEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGASYHPLDGILGLGKGK------SSIVSQLHSQKLI-R 227 (436)
Q Consensus 155 ~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~g~i-~ 227 (436)
+.|++| .+.|.+++|+|+| ++..++++.|||++...........+||||||+.. .++++||.+++.| +
T Consensus 62 ~~Y~~g-~~~g~~~~D~v~~----~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~ 136 (283)
T cd05471 62 ITYGDG-SVTGGLGTDTVTI----GGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS 136 (283)
T ss_pred EEECCC-eEEEEEEEeEEEE----CCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence 999998 8999999999999 45568899999999863224566899999999998 7899999999998 9
Q ss_pred eeeEEEeCC----CCCceEEeCCCCC--CCCCcEEEEcccCCCCceeeEeeEEEECCE--EeccCCCCEEEecccccccc
Q 013772 228 NVVGHCLSG----RGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGK--TTGLKNLPVVFDSGSSYTYL 299 (436)
Q Consensus 228 ~~Fs~~l~~----~~~G~l~fG~~~~--~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~--~i~~~~~~~iiDSGTt~~~l 299 (436)
++||+||.+ ...|.|+||+.+. ..+++.|+|++.....+|.|.+++|.+++. ........++|||||++++|
T Consensus 137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~l 216 (283)
T cd05471 137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYL 216 (283)
T ss_pred CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeC
Confidence 999999986 3789999998764 578999999996546899999999999997 44445689999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCCC
Q 013772 300 SHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNRG 379 (436)
Q Consensus 300 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~~ 379 (436)
|++++++|.+++.+.... . .......|.. ...+|+|+|+|
T Consensus 217 p~~~~~~l~~~~~~~~~~-----~-~~~~~~~~~~-----------~~~~p~i~f~f----------------------- 256 (283)
T cd05471 217 PSSVYDAILKALGAAVSS-----S-DGGYGVDCSP-----------CDTLPDITFTF----------------------- 256 (283)
T ss_pred CHHHHHHHHHHhCCcccc-----c-CCcEEEeCcc-----------cCcCCCEEEEE-----------------------
Confidence 999999999999876541 0 1111112322 23479999988
Q ss_pred eEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 380 NVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 380 ~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
.+|||++|||++|++||++++|||||+
T Consensus 257 ----------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1e-29 Score=219.95 Aligned_cols=156 Identities=42% Similarity=0.799 Sum_probs=124.0
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCCCCCe
Q 013772 77 YNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSND----LVPCEDPICASLHAPGQHKCEDPTQCD 152 (436)
Q Consensus 77 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S----~~~c~s~~c~~~~~~~~~~c~~~~~~~ 152 (436)
|+++|.||||+|++.|+|||||+++|++|. .+.|+|++| .++|.++.|...+......|..+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999999999999999999873 568999988 699999999987654223333448999
Q ss_pred eeeeeCCCceEEEEEEEEEEEeecCCC-CcCCCceEEeeeeecCCCCCCCCCceeeeecCCCCcHHHHhhhccccceeeE
Q 013772 153 YEVEYADGGSSLGVLVKDAFAFNYTNG-QRLNPRLALGCGYDQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVG 231 (436)
Q Consensus 153 ~~~~Y~~Gs~~~G~~~~D~v~~~~~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~i~~~Fs 231 (436)
|.+.|++|+.+.|.+++|+|+++..++ ...+.++.|||++.. .+. ....+||||||+.++||+.||.++ ..++||
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~-~g~-~~~~~GilGLg~~~~Sl~sQl~~~--~~~~FS 146 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSN-SGL-FYGADGILGLGRGPLSLPSQLASS--SGNKFS 146 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GG-GTS-STTEEEEEE-SSSTTSHHHHHHHH----SEEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecc-ccC-CcCCCcccccCCCcccHHHHHHHh--cCCeEE
Confidence 999999999999999999999976532 245679999999987 453 238999999999999999999988 678999
Q ss_pred EEeCC---CCCceEEeCC
Q 013772 232 HCLSG---RGGGFLFFGD 246 (436)
Q Consensus 232 ~~l~~---~~~G~l~fG~ 246 (436)
+||.+ +..|.|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 99986 6789999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=9.3e-25 Score=188.94 Aligned_cols=151 Identities=26% Similarity=0.467 Sum_probs=115.4
Q ss_pred ceeeEeeEEEECCEEeccCC---------CCEEEeccccccccCHHHHHHHHHHHHHhhccCCCcc-CCCCCCCCccccC
Q 013772 266 YYSPGVAELFFGGKTTGLKN---------LPVVFDSGSSYTYLSHVAYQTLTSMMKRELSAKSLKE-APEDRTLPLCWKG 335 (436)
Q Consensus 266 ~~~v~l~~i~v~g~~i~~~~---------~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 335 (436)
+|.|.+.+|+||++.+.++. +.++|||||++++||+++|+++++++.+++....+.+ ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999987653 5799999999999999999999999999998543332 2345677789987
Q ss_pred CCCCCcccccccccceEEEEEeCCCcceEEEEcCceeEEEeCCCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCC
Q 013772 336 KRPFKNVRDVKKYFKSLALSFTDGKTRTLFELTTEAYLIISNRGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEK 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~~i~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~ 415 (436)
.... .......+|+|+|+|.+ ++.++|++++|++...++.+|+++.++. .+..+..|||..+|++++++||+++
T Consensus 81 ~~~~--~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~~~~~Cla~~~~~-~~~~~~~viG~~~~~~~~v~fDl~~ 154 (161)
T PF14541_consen 81 SSFG--VNRDWAKFPTITLHFEG---GADLTLPPENYFVQVSPGVFCLAFVPSD-ADDDGVSVIGNFQQQNYHVVFDLEN 154 (161)
T ss_dssp GCS---EETTEESS--EEEEETT---SEEEEE-HHHHEEEECTTEEEESEEEET-STTSSSEEE-HHHCCTEEEEEETTT
T ss_pred cccc--cccccccCCeEEEEEeC---CcceeeeccceeeeccCCCEEEEEEccC-CCCCCcEEECHHHhcCcEEEEECCC
Confidence 6410 12345679999999997 4999999999999988889999999981 1235789999999999999999999
Q ss_pred CEEEEEe
Q 013772 416 QRIGWMP 422 (436)
Q Consensus 416 ~riGfa~ 422 (436)
+||||++
T Consensus 155 ~~igF~~ 161 (161)
T PF14541_consen 155 GRIGFAP 161 (161)
T ss_dssp TEEEEEE
T ss_pred CEEEEeC
Confidence 9999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=3.3e-22 Score=161.57 Aligned_cols=106 Identities=32% Similarity=0.595 Sum_probs=87.7
Q ss_pred EEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCC-CCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeeeee
Q 013772 79 VTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLY-RPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEVEY 157 (436)
Q Consensus 79 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y-~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~~Y 157 (436)
++|.||||+|++.|+|||||+++||+|. +|..|..+.++.| +|++|. ++. ...|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss------t~~------------~~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS------TYS------------DNGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC------CCC------------CCCcEEEEEe
Confidence 4799999999999999999999999998 8988876666666 887762 111 1468999999
Q ss_pred CCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCC--CCCCCCceeeee
Q 013772 158 ADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPG--ASYHPLDGILGL 209 (436)
Q Consensus 158 ~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~--~~~~~~~GIlGL 209 (436)
++| .+.|.+++|+|+| ++..++++.|||++.. .+ +.....+|||||
T Consensus 62 ~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~-~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDE-PGATFLPALFDGILGL 109 (109)
T ss_pred CCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEec-CCccccccccccccCC
Confidence 999 6889999999999 5567889999999986 44 234578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.23 E-value=3.9e-06 Score=65.38 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=66.4
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeee
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEV 155 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~ 155 (436)
.|++++.|+ .+++.++|||||+.+|+... ....+.. .. .......+
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~----~~---------------------------~~~~~~~~ 47 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL----PL---------------------------TLGGKVTV 47 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC----Cc---------------------------cCCCcEEE
Confidence 689999999 69999999999999999864 1111110 00 01235667
Q ss_pred eeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCCCCCCCceeeeecC
Q 013772 156 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGASYHPLDGILGLGK 211 (436)
Q Consensus 156 ~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~ 211 (436)
..++|.........+.+++ |+....++.+...... . ...+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~-~----~~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGD-A----LGVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEE----CCcEEeccEEEEeCCc-c----cCCceEeChHH
Confidence 7888876777777999999 5666777887777553 1 16899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.13 E-value=0.0039 Score=50.79 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred EEeecccCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 013772 66 RVQGNVYPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKC 145 (436)
Q Consensus 66 ~l~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c 145 (436)
++..+ .+|.|++++.|. .+++.++||||++.+-+... --.... .++..
T Consensus 3 ~i~~~--~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~-~A~~Lg------l~~~~--------------------- 50 (121)
T TIGR02281 3 QLAKD--GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE-DAQRLG------LDLNR--------------------- 50 (121)
T ss_pred EEEEc--CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC------CCccc---------------------
Confidence 44443 577999999997 47999999999999988754 111000 01100
Q ss_pred CCCCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCCCCCCCceeeeec
Q 013772 146 EDPTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGASYHPLDGILGLG 210 (436)
Q Consensus 146 ~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 210 (436)
......+.-+.|......+.-|.+.+ |.....|+.+.+.... ...+|+||+.
T Consensus 51 ---~~~~~~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~------~~~~~LLGm~ 102 (121)
T TIGR02281 51 ---LGYTVTVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG------ALSESLLGMS 102 (121)
T ss_pred ---CCceEEEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC------cCCceEcCHH
Confidence 11234455566755556668899999 6677888887776431 1247999985
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.43 E-value=0.023 Score=43.22 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=54.4
Q ss_pred EEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCeeeeeeC
Q 013772 79 VTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDYEVEYA 158 (436)
Q Consensus 79 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~~~~Y~ 158 (436)
+++.|+ .+++.+++|||++.+.+... -+.... ..+.. ......+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~~------------------------~~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKPRP------------------------KSVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCCcC------------------------CceeEEEEeC
Confidence 356776 47999999999998877654 111110 00000 1113444555
Q ss_pred CCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCCCCCCCceeeeec
Q 013772 159 DGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGASYHPLDGILGLG 210 (436)
Q Consensus 159 ~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 210 (436)
+|.........+.+++ |+....++.|-+... ....+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~------~~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITI----GGITLKNVPFLVVDL------GDPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEE----CCEEEEeEEEEEECC------CCCCEEEeCCc
Confidence 6655556666778888 556666777666552 35689999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.29 E-value=0.16 Score=41.55 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=55.8
Q ss_pred CeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCee
Q 013772 74 TGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDY 153 (436)
Q Consensus 74 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~ 153 (436)
...+++++.|+ ++++.++||||++..++... -+..+.-... ....+
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~-~a~~lgl~~~-------------------------------~~~~~ 59 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA-CAEKCGLMRL-------------------------------IDKRF 59 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH-HHHHcCCccc-------------------------------cCcce
Confidence 34789999998 57899999999999998764 2233321100 00122
Q ss_pred e-eeeC-CCceEEEEEEEEEEEeecCCCCcCCCceEEeeeeecCCCCCCCCCceeeeec
Q 013772 154 E-VEYA-DGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYDQVPGASYHPLDGILGLG 210 (436)
Q Consensus 154 ~-~~Y~-~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 210 (436)
. ...+ ++....|..-.+.+.+ ++... ...|.+... ...|+|||+.
T Consensus 60 ~~~~~g~g~~~~~g~~~~~~l~i----~~~~~-~~~~~Vl~~-------~~~d~ILG~d 106 (124)
T cd05479 60 QGIAKGVGTQKILGRIHLAQVKI----GNLFL-PCSFTVLED-------DDVDFLIGLD 106 (124)
T ss_pred EEEEecCCCcEEEeEEEEEEEEE----CCEEe-eeEEEEECC-------CCcCEEecHH
Confidence 2 2233 2335677777788888 34332 355554432 2689999984
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.75 E-value=1.3 Score=36.01 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.9
Q ss_pred CceeeChhhhcceEEEEECCCCEEEE
Q 013772 395 DLNVIGDISMQDRVVIYDNEKQRIGW 420 (436)
Q Consensus 395 ~~~iLG~~fl~~~yvvfD~~~~riGf 420 (436)
...|||..||+.+-.+.|+.+.+|.|
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 34699999999999999999998854
No 32
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=92.50 E-value=0.75 Score=40.37 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=60.5
Q ss_pred cceEEEEeecccCCeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 013772 61 SSLLFRVQGNVYPTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAP 140 (436)
Q Consensus 61 ~~~~~~l~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~ 140 (436)
....+.+..+ .+|.|.++..|- .|++..++|||-+..-++.. .-. .--+++..
T Consensus 92 g~~~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA~------RlGid~~~---------------- 144 (215)
T COG3577 92 GYQEVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DAR------RLGIDLNS---------------- 144 (215)
T ss_pred CceEEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HHH------HhCCCccc----------------
Confidence 3445666654 588999999996 69999999999998888754 211 11132211
Q ss_pred CCCCCCCCCCCeeeeeeCCCceEEEEEEEEEEEeecCCCCcCCCceE
Q 013772 141 GQHKCEDPTQCDYEVEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLA 187 (436)
Q Consensus 141 ~~~~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~ 187 (436)
...++.+.-++|..-...+-.|.|.| |.....++.
T Consensus 145 --------l~y~~~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~ 179 (215)
T COG3577 145 --------LDYTITVSTANGRARAAPVTLDRVQI----GGIRVKNVD 179 (215)
T ss_pred --------cCCceEEEccCCccccceEEeeeEEE----ccEEEcCch
Confidence 23467777888977777888899999 555455543
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.92 E-value=0.2 Score=38.34 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=24.6
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceEEecC
Q 013772 77 YNVTVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 77 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
|++++.|+ .+++.+++||||+..++..+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 58999999999999999865
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.60 E-value=0.91 Score=34.31 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEeCCCCceEEEEEecCCCceEEecC
Q 013772 80 TVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 80 ~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
.+.|. .+++++++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34554 57999999999999999765
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=88.50 E-value=0.68 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.3
Q ss_pred EcccCCCCceeeEeeEEEECCEEeccCCCCEEEeccccccccCHHHHHH
Q 013772 258 SMSSDYTKYYSPGVAELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQT 306 (436)
Q Consensus 258 p~~~~~~~~~~v~l~~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~ 306 (436)
++.....++|.+. +.|||+. ..+++|||++.+.++.++.++
T Consensus 3 ~i~~~~~g~~~v~---~~InG~~-----~~flVDTGAs~t~is~~~A~~ 43 (121)
T TIGR02281 3 QLAKDGDGHFYAT---GRVNGRN-----VRFLVDTGATSVALNEEDAQR 43 (121)
T ss_pred EEEEcCCCeEEEE---EEECCEE-----EEEEEECCCCcEEcCHHHHHH
Confidence 3443444666554 5788874 379999999999999966544
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.49 E-value=0.87 Score=33.14 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCeeEEEEEEeCCCCceEEEEEecCCCceEEecC
Q 013772 73 PTGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 73 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
..+.+++++.||. +.+..++||||+...++..
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 4568999999995 8999999999999988765
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.81 E-value=2 Score=33.98 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred CceeeChhhhcceEEEEECCCCEE
Q 013772 395 DLNVIGDISMQDRVVIYDNEKQRI 418 (436)
Q Consensus 395 ~~~iLG~~fl~~~yvvfD~~~~ri 418 (436)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999987653
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=85.81 E-value=1 Score=37.42 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=25.5
Q ss_pred ceeeChhhhcceEEEEECCCCEEEEEeC
Q 013772 396 LNVIGDISMQDRVVIYDNEKQRIGWMPA 423 (436)
Q Consensus 396 ~~iLG~~fl~~~yvvfD~~~~riGfa~~ 423 (436)
..|||..+|+.+..+-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4799999999999999999999999753
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.65 E-value=1.8 Score=32.48 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=22.9
Q ss_pred EEECCEEeccCCCCEEEeccccccccCHHHHHHH
Q 013772 274 LFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTL 307 (436)
Q Consensus 274 i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l 307 (436)
++|||+. ..+++|||++.+.++++.++++
T Consensus 3 v~vng~~-----~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKP-----VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEE-----EEEEEcCCCCcEEECHHHHHHc
Confidence 5677764 3699999999999999666554
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.64 E-value=2.7 Score=32.51 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=22.2
Q ss_pred EEEEEeCCCCceEEEEEecCCCceEEecC
Q 013772 78 NVTVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 78 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
+++|.|. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 4667776 46999999999999988765
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.03 E-value=2.6 Score=32.08 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=24.3
Q ss_pred EEEECCEEeccCCCCEEEeccccccccCHHHHHHH
Q 013772 273 ELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTL 307 (436)
Q Consensus 273 ~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l 307 (436)
.+.|||+.+ .+++|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i-----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-----EEEEcCCcceEEeCHHHHHHh
Confidence 467888865 589999999999999776544
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=78.13 E-value=3.5 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=23.5
Q ss_pred EEEECCEEeccCCCCEEEeccccccccCHHHHHHH
Q 013772 273 ELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTL 307 (436)
Q Consensus 273 ~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l 307 (436)
.+.|+|..+ .+++|||++-.+++....+.+
T Consensus 12 ~~~I~g~~~-----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-----EEEEeCCCcceecCHHHHHHh
Confidence 356777654 499999999999999666554
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.42 E-value=6 Score=29.89 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=23.0
Q ss_pred EEEECCEEeccCCCCEEEeccccccccCHHHHHHH
Q 013772 273 ELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTL 307 (436)
Q Consensus 273 ~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l 307 (436)
.+.+|++. ..+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~-----~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQP-----VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEE-----EEEEEECCCCcEEcCHHHHHHc
Confidence 45677664 3699999999999999665543
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.42 E-value=5.9 Score=30.04 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEeCCCCceEEEEEecCCCceEEecC
Q 013772 80 TVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 80 ~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
.+.|+ .|.+.+++|||+.++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 69999999999999998754
No 45
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.30 E-value=2.2 Score=32.88 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=13.3
Q ss_pred CCCcchhhHHHHHHhhhhhcc
Q 013772 1 MGKERVGLVLALLLMSFVIST 21 (436)
Q Consensus 1 m~~~~~~~~~~ll~~~~~~~~ 21 (436)
|. +|.+|+|+|+++++++..
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 77 788888888766443333
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.25 E-value=5.5 Score=29.97 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=23.4
Q ss_pred EEECCEEeccCCCCEEEeccccccccCHHHHHHH
Q 013772 274 LFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTL 307 (436)
Q Consensus 274 i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l 307 (436)
+.|||+.+ .+++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56777754 589999999999999777654
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=67.53 E-value=7.4 Score=33.03 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.1
Q ss_pred EEEEEeCCCCceEEEEEecCCCceEEecC
Q 013772 78 NVTVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 78 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
+..+.++....++.++|||||+...+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555567999999999999988764
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=62.26 E-value=6.3 Score=30.38 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.0
Q ss_pred eEEEECCEEeccCCCCEEEeccccccccCHH
Q 013772 272 AELFFGGKTTGLKNLPVVFDSGSSYTYLSHV 302 (436)
Q Consensus 272 ~~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~ 302 (436)
..|.++|+.+ .+++|||+..+.++.+
T Consensus 8 i~v~i~g~~i-----~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 8 ITVKINGKKI-----KALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEETTEEE-----EEEEETTBSSEEESSG
T ss_pred EEEeECCEEE-----EEEEecCCCcceeccc
Confidence 3467777754 6999999999999984
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=59.82 E-value=24 Score=31.18 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=30.7
Q ss_pred EEEcccCCCCceeeEeeEEEECCEEeccCCCCEEEeccccccccCHHHHH
Q 013772 256 WTSMSSDYTKYYSPGVAELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQ 305 (436)
Q Consensus 256 ~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~ 305 (436)
.+-+....+++|.++ ..|||+.+ ..++|||.|.+.++++...
T Consensus 95 ~v~Lak~~~GHF~a~---~~VNGk~v-----~fLVDTGATsVal~~~dA~ 136 (215)
T COG3577 95 EVSLAKSRDGHFEAN---GRVNGKKV-----DFLVDTGATSVALNEEDAR 136 (215)
T ss_pred EEEEEecCCCcEEEE---EEECCEEE-----EEEEecCcceeecCHHHHH
Confidence 344444445777655 68899876 5799999999999996544
No 50
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=55.60 E-value=34 Score=30.30 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=20.2
Q ss_pred CceeeChhhhcceEEEEECCCCEEEEEe
Q 013772 395 DLNVIGDISMQDRVVIYDNEKQRIGWMP 422 (436)
Q Consensus 395 ~~~iLG~~fl~~~yvvfD~~~~riGfa~ 422 (436)
-..|||.+|+|.|+=..+.+ .+|-|-.
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 35799999999887666665 4677765
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=53.50 E-value=9.9 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=22.6
Q ss_pred EEECCEEeccCCCCEEEeccccccccCHHHHHHHH
Q 013772 274 LFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQTLT 308 (436)
Q Consensus 274 i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~l~ 308 (436)
+.++|+ .+-.+.+|||++...+|...++.+-
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 1347899999999999997666543
No 52
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=53.46 E-value=76 Score=24.93 Aligned_cols=63 Identities=21% Similarity=0.123 Sum_probs=39.2
Q ss_pred EEEEeCCCCc----eEEEEEecCCCceE-EecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCee
Q 013772 79 VTVYVGQPPK----PYFLDLDTGSDLIW-LQCDAPCVQCVEAPHPLYRPSNDLVPCEDPICASLHAPGQHKCEDPTQCDY 153 (436)
Q Consensus 79 ~~i~iGtP~q----~~~v~~DTGSs~~w-v~~~~~c~~C~~~~~~~y~p~~S~~~c~s~~c~~~~~~~~~~c~~~~~~~~ 153 (436)
+++.|..|.| ++.+++|||.+..- ++.. --.. - ...+ ....
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~-~a~~-----l-gl~~---------------------------~~~~ 47 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPD-IVNK-----L-GLPE---------------------------LDQR 47 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHH-HHHH-----c-CCCc---------------------------ccCc
Confidence 5778888733 67899999988664 5533 0000 0 0010 1133
Q ss_pred eeeeCCCceEEEEEEEEEEEee
Q 013772 154 EVEYADGGSSLGVLVKDAFAFN 175 (436)
Q Consensus 154 ~~~Y~~Gs~~~G~~~~D~v~~~ 175 (436)
.+.-++|+...-....+++.++
T Consensus 48 ~~~tA~G~~~~~~v~~~~v~ig 69 (107)
T TIGR03698 48 RVYLADGREVLTDVAKASIIIN 69 (107)
T ss_pred EEEecCCcEEEEEEEEEEEEEC
Confidence 5667788777788889999994
No 53
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=47.77 E-value=1.6e+02 Score=28.59 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=32.3
Q ss_pred EE-EEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEEEEEeCC
Q 013772 381 VC-LGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRIGWMPAN 424 (436)
Q Consensus 381 ~C-l~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~riGfa~~~ 424 (436)
.| +.++... .-...||...||.+--.-|++++++-|+...
T Consensus 307 ~c~ftV~d~~----~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 307 PCSFTVLDRR----DMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred ccceEEecCC----CcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 47 6777654 2346999999999999999999999888753
No 54
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=13 Score=30.04 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=49.6
Q ss_pred CEEEecccc-ccccCHHHHHHHHHHHHHhhccCCCccCCCCCCCCccccCCCCCCcccccccccceEEEEEeCCCcceEE
Q 013772 287 PVVFDSGSS-YTYLSHVAYQTLTSMMKRELSAKSLKEAPEDRTLPLCWKGKRPFKNVRDVKKYFKSLALSFTDGKTRTLF 365 (436)
Q Consensus 287 ~~iiDSGTt-~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~~g~~~~~~ 365 (436)
..++|||-+ ++.+|..+++++-. +.. .....|-.. .-.+...+.- +.+
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~~-----------~~~---~~~~~~~a~-------------~~~v~t~V~~----~~i 76 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLGL-----------PLF---STIRIVLAD-------------GGVVKTSVAL----ATI 76 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcCC-----------Ccc---CChhhhhhc-------------CCEEEEEEEE----EEE
Confidence 348999999 99999977765421 111 001112111 1123344443 556
Q ss_pred EEcCceeEEEeCCCeEEEEEEeCCcCCCCCceeeChhhhcceEEEEECCCCEE
Q 013772 366 ELTTEAYLIISNRGNVCLGILNGAEVGLQDLNVIGDISMQDRVVIYDNEKQRI 418 (436)
Q Consensus 366 ~i~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~ri 418 (436)
++....+... +..+. . ....++|-..|+..-.++|....++
T Consensus 77 ki~g~e~~~~---------Vl~s~-~--~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 77 KIDGVEKVAF---------VLASD-N--LPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred EECCEEEEEE---------EEccC-C--CcccchhhhhhhhccEEEcCCcceE
Confidence 6655554431 11111 1 2234899999999999999866654
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.44 E-value=13 Score=30.22 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=24.9
Q ss_pred CeeEEEEEEeCCCCceEEEEEecCCCceEEecCCCCCCCC
Q 013772 74 TGYYNVTVYVGQPPKPYFLDLDTGSDLIWLQCDAPCVQCV 113 (436)
Q Consensus 74 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~~c~~C~ 113 (436)
...+|++++|. .+++..++|||...+-+... -+..|+
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~-~a~r~g 58 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS-CAERCG 58 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHH-HHHHTT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHH-HHHHcC
Confidence 33789999998 58999999999999988764 224564
No 56
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=44.11 E-value=19 Score=26.60 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=19.1
Q ss_pred cchhhHHHHHHhhhhhccCCcccccc
Q 013772 4 ERVGLVLALLLMSFVISTSSSDEHQL 29 (436)
Q Consensus 4 ~~~~~~~~ll~~~~~~~~~~~~~~~~ 29 (436)
.|-+++|.||++.++++.....++..
T Consensus 2 aRRlwiLslLAVtLtVALAAPsQKsK 27 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALAAPSQKSK 27 (100)
T ss_pred chhhHHHHHHHHHHHHHhhccccccc
Confidence 46778999999988888777654433
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=43.54 E-value=26 Score=28.49 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=21.7
Q ss_pred EEEECCEEeccCCCCEEEeccccccccCHHHHHH
Q 013772 273 ELFFGGKTTGLKNLPVVFDSGSSYTYLSHVAYQT 306 (436)
Q Consensus 273 ~i~v~g~~i~~~~~~~iiDSGTt~~~lp~~~~~~ 306 (436)
.+++||+.+ .|++|||+..+.++....++
T Consensus 28 ~~~ing~~v-----kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV-----KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE-----EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE-----EEEEeCCCCccccCHHHHHH
Confidence 467788865 69999999999999966554
No 58
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=39.35 E-value=1.3e+02 Score=26.84 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=48.3
Q ss_pred eCCCCCCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccCCCCEEEec-cccccccCHHHHHHHHHHHHHhhc
Q 013772 244 FGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLKNLPVVFDS-GSSYTYLSHVAYQTLTSMMKRELS 316 (436)
Q Consensus 244 fG~~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~~~~iiDS-GTt~~~lp~~~~~~l~~~i~~~~~ 316 (436)
+|+.-.+++.+.|- +..-...+-.+.+++|.++|..+++. ..+.|. |-.-+|+|.+......+++.+.+.
T Consensus 81 i~g~~IPkgt~l~G-~~~~~~~Rl~i~I~SI~~~~~IipV~--L~vYD~DG~eGlyVP~s~~~~a~ke~~~~~~ 151 (200)
T PF12508_consen 81 IGGILIPKGTYLYG-VASFQGQRLLITITSIEYGGNIIPVE--LSVYDLDGQEGLYVPNSAEREAAKEMAANAG 151 (200)
T ss_pred ECCEEeCCCCEEEE-EEeeeccEEEEEEEEEEECCEEEEEE--EEEECCCCCcccccCCchHHHHHHHHHHHHh
Confidence 34433344444444 22222366789999999999988774 667776 888899999888888887777654
No 59
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=33.71 E-value=56 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=23.4
Q ss_pred eeEEEE---EEeCC---CCceEEEEEecCCCceEEecC
Q 013772 75 GYYNVT---VYVGQ---PPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 75 ~~Y~~~---i~iGt---P~q~~~v~~DTGSs~~wv~~~ 106 (436)
..|.++ |+||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 356655 57874 223467999999999999975
No 60
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=29.62 E-value=40 Score=31.83 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=22.5
Q ss_pred eeEEEE---EEeCCCC--------ceEEEEEecCCCceEEecC
Q 013772 75 GYYNVT---VYVGQPP--------KPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 75 ~~Y~~~---i~iGtP~--------q~~~v~~DTGSs~~wv~~~ 106 (436)
..|.++ |+||... ....++||||++.+++|..
T Consensus 146 ~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 146 TFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 356655 5777421 2236899999999999964
No 61
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=28.92 E-value=60 Score=30.97 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=23.1
Q ss_pred eeEEEE---EEeCCC-----CceEEEEEecCCCceEEecC
Q 013772 75 GYYNVT---VYVGQP-----PKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 75 ~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~wv~~~ 106 (436)
++|.++ |+||.. .+...++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 356665 677753 23457999999999999864
No 62
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=28.20 E-value=2.7e+02 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.6
Q ss_pred eEEEEEecCCCceEEecC
Q 013772 89 PYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 89 ~~~v~~DTGSs~~wv~~~ 106 (436)
....++|||+...-+|..
T Consensus 9 ~~~fLVDTGA~vSviP~~ 26 (89)
T cd06094 9 GLRFLVDTGAAVSVLPAS 26 (89)
T ss_pred CcEEEEeCCCceEeeccc
Confidence 567899999999999865
No 63
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=27.70 E-value=79 Score=29.22 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.5
Q ss_pred eEEEEEecCCCceEEecC
Q 013772 89 PYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 89 ~~~v~~DTGSs~~wv~~~ 106 (436)
...++||||++.+.+|..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 456899999999999875
No 64
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.23 E-value=1.1e+02 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCCceEEEEEecCCCceEEecC
Q 013772 76 YYNVTVYVGQPPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 76 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 106 (436)
.-.+.+.|.+ ++..++||+|++...+...
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 5677888885 7899999999999988754
No 65
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=23.85 E-value=72 Score=29.41 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=28.1
Q ss_pred eEEEEeecccCCeeEEEE---EEeCC-----CCceEEEEEecCCCceEEecC
Q 013772 63 LLFRVQGNVYPTGYYNVT---VYVGQ-----PPKPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 63 ~~~~l~~~~~~~~~Y~~~---i~iGt-----P~q~~~v~~DTGSs~~wv~~~ 106 (436)
..+|+... ....|.+. |.||. ......++||||++.+|+|..
T Consensus 170 ~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 170 TYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred EEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 34455432 13456655 56765 245679999999999999965
No 66
>PF15240 Pro-rich: Proline-rich
Probab=23.51 E-value=47 Score=28.77 Aligned_cols=12 Identities=42% Similarity=0.301 Sum_probs=6.8
Q ss_pred cchhhHHHHHHh
Q 013772 4 ERVGLVLALLLM 15 (436)
Q Consensus 4 ~~~~~~~~ll~~ 15 (436)
+.|+|.+|||+|
T Consensus 2 LlVLLSvALLAL 13 (179)
T PF15240_consen 2 LLVLLSVALLAL 13 (179)
T ss_pred hhHHHHHHHHHh
Confidence 345555666665
No 67
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.87 E-value=45 Score=17.00 Aligned_cols=6 Identities=0% Similarity=0.285 Sum_probs=2.7
Q ss_pred cchhhH
Q 013772 4 ERVGLV 9 (436)
Q Consensus 4 ~~~~~~ 9 (436)
||+..+
T Consensus 2 Mk~vII 7 (19)
T PF13956_consen 2 MKLVII 7 (19)
T ss_pred ceehHH
Confidence 444444
No 68
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=22.68 E-value=3.2e+02 Score=27.27 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=42.7
Q ss_pred CCceeeEeeEEEECCEEeccCCCCEEEec-cccccccCHHHHHHHHHHHHHhhc
Q 013772 264 TKYYSPGVAELFFGGKTTGLKNLPVVFDS-GSSYTYLSHVAYQTLTSMMKRELS 316 (436)
Q Consensus 264 ~~~~~v~l~~i~v~g~~i~~~~~~~iiDS-GTt~~~lp~~~~~~l~~~i~~~~~ 316 (436)
..+-.|.+++|.++|..+++. ..+.|+ |-.-+|+|.+......+++.+.+.
T Consensus 303 g~R~~i~I~si~~~g~iipV~--L~vyD~DG~eGiyVP~s~~~~a~ke~~~~~~ 354 (410)
T TIGR03779 303 GERLDIKISSIEYNGTILPVE--LSVYDTDGQEGIYVPGSAERDAAKEVAANMG 354 (410)
T ss_pred cceEEEEEEEEEECCEEEEEE--EEEEcCCCCCccccCCcHHHHHHHHHHHhhc
Confidence 366789999999999998874 788887 888999999999888888877554
No 69
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.79 E-value=99 Score=29.67 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEeCCCCceE------EEEEecCCCceEEecC
Q 013772 81 VYVGQPPKPY------FLDLDTGSDLIWLQCD 106 (436)
Q Consensus 81 i~iGtP~q~~------~v~~DTGSs~~wv~~~ 106 (436)
+.|=+|.|++ .+.+|.++.++|++-.
T Consensus 75 ~dIrpP~~pL~~Isg~r~erdGd~~~lv~~~~ 106 (342)
T COG3317 75 LDIRPPAQPLALISGSRAERDGDTRWLVVENQ 106 (342)
T ss_pred cccCCCCCchhhcccchheecCCeeEEEEeCC
Confidence 4455566665 5567999999999876
No 70
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=20.41 E-value=1.5e+02 Score=23.94 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=34.0
Q ss_pred EEeCCCCCCCCCcEEEEcccCCCCceeeEeeEEEECCEEeccCCCCEEEecc
Q 013772 242 LFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGKTTGLKNLPVVFDSG 293 (436)
Q Consensus 242 l~fG~~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~g~~i~~~~~~~iiDSG 293 (436)
+.+.|.+++...++.-++ .++.|.|..+=+...|..+.......+|||-
T Consensus 74 ~s~~G~efYGk~ltlp~l---~dG~ytvk~eiL~s~g~vV~t~s~~~~IDtt 122 (124)
T PF13752_consen 74 ISSNGKEFYGKELTLPAL---GDGTYTVKSEILDSQGTVVQTYSYPFTIDTT 122 (124)
T ss_pred EEeCCceeeeeEEEeccC---CCCcEEEEEEeeccCCCEEEeeeEeEEEecc
Confidence 444454444444443333 2488999988888889988888889999973
No 71
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=20.28 E-value=81 Score=30.04 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=22.6
Q ss_pred eeEEEE---EEeCCCC----ceEEEEEecCCCceEEecC
Q 013772 75 GYYNVT---VYVGQPP----KPYFLDLDTGSDLIWLQCD 106 (436)
Q Consensus 75 ~~Y~~~---i~iGtP~----q~~~v~~DTGSs~~wv~~~ 106 (436)
++|.++ |.||... ....++||||++.+++|..
T Consensus 177 ~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 177 GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSG 215 (316)
T ss_pred eEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHH
Confidence 456654 6777421 2347999999999999864
Done!