Query 013773
Match_columns 436
No_of_seqs 276 out of 733
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g2k_A EIF-5, eukaryotic trans 100.0 3.5E-65 1.2E-69 465.6 14.3 150 1-152 1-151 (170)
2 2e9h_A EIF-5, eukaryotic trans 100.0 1.2E-63 3.9E-68 450.8 15.4 147 1-149 8-155 (157)
3 2d74_B Translation initiation 100.0 1.1E-45 3.7E-50 331.1 10.7 116 13-135 25-140 (148)
4 1nee_A EIF-2-beta, probable tr 100.0 8.1E-46 2.8E-50 328.9 9.7 115 13-134 23-137 (138)
5 3cw2_K Translation initiation 100.0 1.1E-46 3.7E-51 334.8 -8.7 117 12-134 22-138 (139)
6 2ful_A EIF-5, eukaryotic trans 100.0 1.9E-29 6.3E-34 233.3 12.6 148 285-436 11-166 (177)
7 2iu1_A EIF5, eukaryotic transl 100.0 5.4E-28 1.8E-32 228.6 16.0 146 286-435 8-159 (208)
8 3jui_A Translation initiation 100.0 8.1E-28 2.8E-32 223.2 14.6 146 289-436 17-180 (182)
9 1paq_A Translation initiation 99.9 1.5E-27 5.1E-32 222.6 15.5 148 287-436 23-186 (189)
10 3d3m_A Eukaryotic translation 99.9 1E-22 3.5E-27 186.4 15.6 113 317-430 35-168 (168)
11 3l6a_A Eukaryotic translation 99.8 1.4E-19 4.7E-24 184.3 15.1 143 286-430 196-364 (364)
12 1k8b_A EIF-2-beta, probable tr 99.8 1.6E-20 5.3E-25 140.0 5.6 52 24-81 1-52 (52)
13 1k81_A EIF-2-beta, probable tr 99.4 1.7E-13 5.9E-18 94.6 2.8 35 99-134 1-35 (36)
14 1ug3_A EIF4GI, eukaryotic prot 99.4 1.6E-12 5.4E-17 130.8 10.5 120 286-407 207-336 (339)
15 1h2v_C 80 kDa nuclear CAP bind 94.0 0.57 2E-05 51.8 14.0 117 285-406 476-607 (771)
16 2ogh_A Eukaryotic translation 88.9 1.8 6.2E-05 36.3 8.5 85 1-94 1-96 (108)
17 1qyp_A RNA polymerase II; tran 83.7 0.87 3E-05 33.5 3.4 33 98-130 15-53 (57)
18 1tfi_A Transcriptional elongat 82.7 1.2 4.1E-05 32.3 3.7 32 98-129 9-46 (50)
19 1pft_A TFIIB, PFTFIIBN; N-term 81.4 0.74 2.5E-05 32.9 2.1 31 98-131 5-35 (50)
20 2pk7_A Uncharacterized protein 81.3 0.42 1.4E-05 37.1 0.9 35 95-133 5-39 (69)
21 2if1_A EIF1, SUI1; translation 80.2 2 7E-05 37.0 4.9 68 20-93 41-113 (126)
22 1dl6_A Transcription factor II 77.2 1 3.5E-05 33.6 1.8 28 99-129 12-39 (58)
23 4h62_V Mediator of RNA polymer 74.5 1.7 5.8E-05 27.6 2.0 20 81-100 8-27 (31)
24 2lo3_A SAGA-associated factor 72.5 1.1 3.9E-05 31.4 0.9 28 106-133 1-30 (44)
25 2jr6_A UPF0434 protein NMA0874 72.1 1.2 4.2E-05 34.4 1.1 33 97-133 7-39 (68)
26 1twf_I B12.6, DNA-directed RNA 71.2 1.7 5.9E-05 37.0 2.0 39 99-137 73-117 (122)
27 2hf1_A Tetraacyldisaccharide-1 70.6 1.4 4.9E-05 34.0 1.2 33 97-133 7-39 (68)
28 2js4_A UPF0434 protein BB2007; 69.8 1.9 6.3E-05 33.5 1.7 33 97-133 7-39 (70)
29 4bbr_M Transcription initiatio 69.4 2 6.7E-05 42.9 2.3 43 99-142 22-67 (345)
30 2vut_I AREA, nitrogen regulato 68.6 0.95 3.2E-05 31.9 -0.2 29 100-129 3-31 (43)
31 3po3_S Transcription elongatio 67.2 1.7 5.7E-05 39.6 1.1 33 98-130 137-175 (178)
32 3h0g_I DNA-directed RNA polyme 66.4 3.4 0.00012 34.7 2.8 32 99-130 73-110 (113)
33 1gnf_A Transcription factor GA 65.9 1.1 3.6E-05 32.2 -0.4 30 99-129 5-34 (46)
34 3k1f_M Transcription initiatio 65.8 2.7 9.4E-05 38.4 2.2 42 99-141 22-66 (197)
35 1gh9_A 8.3 kDa protein (gene M 64.8 2.8 9.4E-05 32.7 1.8 34 99-138 5-38 (71)
36 2fiy_A Protein FDHE homolog; F 64.6 3.1 0.00011 41.0 2.6 37 97-133 181-221 (309)
37 1wii_A Hypothetical UPF0222 pr 63.0 5.4 0.00019 32.1 3.3 38 95-132 20-59 (85)
38 1d0q_A DNA primase; zinc-bindi 62.7 7.9 0.00027 31.6 4.3 33 99-132 38-70 (103)
39 2jny_A Uncharacterized BCR; st 62.4 1.4 4.9E-05 33.9 -0.3 36 94-133 6-41 (67)
40 1pqv_S STP-alpha, transcriptio 58.7 4.7 0.00016 39.6 2.7 32 98-129 268-305 (309)
41 2au3_A DNA primase; zinc ribbo 58.2 6.8 0.00023 39.6 3.9 32 100-132 36-67 (407)
42 3a43_A HYPD, hydrogenase nicke 57.8 6.8 0.00023 34.0 3.3 16 98-113 107-122 (139)
43 1qxf_A GR2, 30S ribosomal prot 57.2 2.5 8.4E-05 32.5 0.2 43 98-143 7-51 (66)
44 3dfx_A Trans-acting T-cell-spe 56.6 1.5 5.1E-05 33.5 -1.1 31 99-130 8-38 (63)
45 2kae_A GATA-type transcription 56.0 2.1 7.3E-05 33.3 -0.3 30 99-129 9-39 (71)
46 2xzm_F EIF1; ribosome, transla 55.4 13 0.00045 30.6 4.5 68 20-93 16-88 (101)
47 3k7a_M Transcription initiatio 54.2 3.4 0.00012 41.0 0.8 31 98-129 21-51 (345)
48 3j20_Y 30S ribosomal protein S 51.4 8.1 0.00028 27.8 2.2 30 97-130 18-47 (50)
49 1vk6_A NADH pyrophosphatase; 1 51.4 8.9 0.0003 36.7 3.2 41 87-131 96-136 (269)
50 1x0t_A Ribonuclease P protein 51.2 9.4 0.00032 32.4 3.0 34 100-133 67-107 (120)
51 4gat_A Nitrogen regulatory pro 50.9 2.5 8.7E-05 32.4 -0.6 31 99-130 10-40 (66)
52 3j20_W 30S ribosomal protein S 50.4 3.8 0.00013 31.2 0.3 29 98-129 15-43 (63)
53 3c5t_B Exendin-4, exenatide; l 48.9 6.9 0.00024 25.7 1.3 13 418-430 9-21 (31)
54 2k3r_A Ribonuclease P protein 48.5 10 0.00034 32.4 2.7 34 100-133 62-102 (123)
55 1nui_A DNA primase/helicase; z 47.9 10 0.00035 35.5 3.0 30 98-130 14-43 (255)
56 2nsz_A Programmed cell death p 46.0 1.2E+02 0.0041 25.4 9.3 105 293-399 13-123 (129)
57 3u5c_b RP61, YS20, 40S ribosom 45.1 6.2 0.00021 31.5 0.8 30 98-130 34-63 (82)
58 2xzm_6 RPS27E; ribosome, trans 45.1 4.4 0.00015 32.4 -0.1 29 98-129 32-60 (81)
59 2kpi_A Uncharacterized protein 44.2 12 0.00042 27.5 2.3 33 95-133 7-41 (56)
60 3h0g_I DNA-directed RNA polyme 43.4 8.4 0.00029 32.2 1.4 35 99-134 5-40 (113)
61 3cng_A Nudix hydrolase; struct 43.2 5.5 0.00019 35.3 0.2 35 98-132 3-37 (189)
62 3cc2_Z 50S ribosomal protein L 42.9 27 0.00092 29.6 4.5 82 39-132 9-90 (116)
63 3qt1_I DNA-directed RNA polyme 42.6 5.2 0.00018 34.7 0.0 32 99-130 93-130 (133)
64 1uw4_B UPF2, regulator of nons 42.5 2.3E+02 0.0077 26.8 12.2 110 285-402 2-125 (248)
65 1x3z_A Peptide: N-glycanase; h 42.1 17 0.00057 36.3 3.5 50 84-133 99-168 (335)
66 3mhs_E SAGA-associated factor 42.1 6.1 0.00021 32.4 0.3 26 106-131 59-86 (96)
67 3ga8_A HTH-type transcriptiona 40.8 19 0.00065 27.7 3.1 33 100-132 4-48 (78)
68 1vq8_Z 50S ribosomal protein L 40.6 11 0.00038 30.0 1.7 31 98-132 27-57 (83)
69 1twf_I B12.6, DNA-directed RNA 39.7 20 0.00068 30.3 3.2 36 98-133 4-39 (122)
70 3iz6_X 40S ribosomal protein S 38.6 6 0.0002 31.9 -0.2 29 99-130 37-65 (86)
71 2kdx_A HYPA, hydrogenase/ureas 37.1 22 0.00076 29.6 3.1 16 98-113 89-105 (119)
72 2ion_A PDCD4, programmed cell 37.1 1.9E+02 0.0065 25.0 9.3 105 294-401 16-127 (152)
73 2g49_C Glucagon preproprotein; 36.8 14 0.00047 23.9 1.3 12 418-429 17-28 (29)
74 1ltl_A DNA replication initiat 36.8 11 0.00037 36.2 1.2 108 33-142 40-177 (279)
75 3o9x_A Uncharacterized HTH-typ 36.4 20 0.00068 29.7 2.7 33 99-131 3-47 (133)
76 2l63_A GLP-2, glucagon-like pe 35.5 16 0.00055 24.3 1.5 13 418-430 17-29 (33)
77 1d4u_A Nucleotide excision rep 34.5 6.7 0.00023 33.1 -0.6 49 97-146 4-56 (111)
78 1t5q_A Gastric inhibitory poly 33.8 18 0.00061 23.5 1.5 12 418-429 17-28 (30)
79 1jrj_A Exendin-4; Trp-CAGE, GL 33.0 17 0.00057 25.1 1.3 12 418-429 17-28 (39)
80 3qt1_I DNA-directed RNA polyme 31.0 17 0.00059 31.4 1.4 37 98-134 24-60 (133)
81 2j9u_B VPS36, vacuolar protein 30.9 16 0.00053 28.8 1.0 31 99-137 18-57 (76)
82 3iol_B Glucagon; receptor-liga 30.8 21 0.00073 23.2 1.5 12 418-429 17-28 (31)
83 1twf_L ABC10-alpha, DNA-direct 30.2 9.1 0.00031 29.6 -0.4 34 99-137 29-62 (70)
84 2b4n_A Gastric inhibitory poly 30.1 20 0.00068 25.1 1.3 14 418-431 17-30 (42)
85 2apo_B Ribosome biogenesis pro 29.5 23 0.00079 26.6 1.7 26 98-133 6-31 (60)
86 2qkd_A Zinc finger protein ZPR 29.0 33 0.0011 35.0 3.4 37 15-51 86-124 (404)
87 3j21_g 50S ribosomal protein L 28.2 13 0.00043 27.1 0.0 27 95-129 11-37 (51)
88 2jrp_A Putative cytoplasmic pr 27.6 36 0.0012 27.1 2.6 9 99-107 3-11 (81)
89 2zjr_Z 50S ribosomal protein L 27.3 17 0.00058 27.2 0.6 25 96-129 28-52 (60)
90 3iz5_m 60S ribosomal protein L 26.6 33 0.0011 27.9 2.3 43 85-132 24-66 (92)
91 4hc9_A Trans-acting T-cell-spe 26.3 12 0.00041 31.6 -0.4 31 99-130 60-90 (115)
92 4hc9_A Trans-acting T-cell-spe 26.2 12 0.00041 31.6 -0.4 30 99-129 6-35 (115)
93 1d1r_A Hypothetical 11.4 KD pr 25.9 25 0.00085 29.8 1.5 65 23-93 33-99 (116)
94 3mn2_A Probable ARAC family tr 23.4 57 0.0019 25.7 3.2 29 39-67 19-47 (108)
95 2aus_D NOP10, ribosome biogene 23.2 31 0.0011 25.9 1.4 26 98-133 5-30 (60)
96 3h0g_L DNA-directed RNA polyme 23.0 35 0.0012 25.8 1.7 35 98-137 21-55 (63)
97 3lsg_A Two-component response 22.9 60 0.0021 25.3 3.2 29 39-67 20-48 (103)
98 2jne_A Hypothetical protein YF 21.1 57 0.002 26.9 2.7 27 97-129 31-57 (101)
99 2qkd_A Zinc finger protein ZPR 21.1 35 0.0012 34.8 1.8 32 99-130 13-51 (404)
100 2k9s_A Arabinose operon regula 20.9 68 0.0023 25.2 3.2 29 39-67 21-49 (107)
101 2k5r_A Uncharacterized protein 20.6 24 0.00082 29.0 0.3 15 119-133 52-66 (97)
102 2rrh_A VIP peptides; peptide h 20.4 41 0.0014 21.5 1.3 12 418-429 17-28 (29)
103 1lko_A Rubrerythrin all-iron(I 20.3 75 0.0026 28.6 3.7 40 85-130 133-181 (191)
104 1u8b_A ADA polyprotein; protei 20.1 68 0.0023 26.4 3.2 28 39-66 94-121 (133)
105 3oou_A LIN2118 protein; protei 20.1 72 0.0025 25.1 3.2 29 39-67 22-50 (108)
No 1
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=3.5e-65 Score=465.57 Aligned_cols=150 Identities=56% Similarity=0.996 Sum_probs=145.4
Q ss_pred CceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEe
Q 013773 1 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNG 80 (436)
Q Consensus 1 Ma~ini~~~~~~D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G 80 (436)
|+ ||| +++++||||||+||+|++++||+||||||+|+||.|||++|+|||+||+|||++||||+|+||++++||||||
T Consensus 1 ~~-~Ni-~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG 78 (170)
T 2g2k_A 1 LS-VNV-NRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 78 (170)
T ss_dssp CC-SCC-CSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEB
T ss_pred Cc-ccc-cCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 64 999 9999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ccCHHHHHHHHHHHHhhccccCCCCCCCceEEEe-cCceeeeeccccCcccccCchhhhhhhhhcCCCccccc
Q 013773 81 SHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPESKKA 152 (436)
Q Consensus 81 ~~~~~~l~~~l~~fi~~yVlC~~C~~peT~l~~~-k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pp~~~~~ 152 (436)
+|++.+||++|++||++||+|++|+||||.|+++ ++++++++|.|||++++|+++|||+|||+||||+.+++
T Consensus 79 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~~ 151 (170)
T 2g2k_A 79 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDS 151 (170)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCSS
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCCCCCcc
Confidence 9999999999999999999999999999999996 68999999999999999999999999999999986653
No 2
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-63 Score=450.75 Aligned_cols=147 Identities=58% Similarity=1.024 Sum_probs=143.4
Q ss_pred CceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEe
Q 013773 1 MALLNIGADNRGDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNG 80 (436)
Q Consensus 1 Ma~ini~~~~~~D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G 80 (436)
|| ||| +|+++||||||+||+|++++||+||||||+|+||.|||++|+|||+||+|||++||||+|+||++++||||||
T Consensus 8 m~-~nI-~r~~~d~~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G 85 (157)
T 2e9h_A 8 MS-VNV-NRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 85 (157)
T ss_dssp CE-EES-STTCCCSCCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEB
T ss_pred cE-Eec-cCCCCCcccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 77 999 8999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred ccCHHHHHHHHHHHHhhccccCCCCCCCceEEEe-cCceeeeeccccCcccccCchhhhhhhhhcCCCcc
Q 013773 81 SHDTAKLAGLLENFIKKYVQCYGCGNPETEIIIT-KTQMIQLKCAACGFVSDVDMRDKLNTFILKNPPES 149 (436)
Q Consensus 81 ~~~~~~l~~~l~~fi~~yVlC~~C~~peT~l~~~-k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pp~~ 149 (436)
+|++++||++|++||++||+|++|+||||.|+++ ++++++++|.|||++++|+++|||++||+||||+.
T Consensus 86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~~Kl~~~i~knpp~~ 155 (157)
T 2e9h_A 86 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPEN 155 (157)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCCSSHHHHHHHSCCCC
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccchhhhhhhhhcCCCCC
Confidence 9999999999999999999999999999999985 68999999999999999999999999999999964
No 3
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=1.1e-45 Score=331.14 Aligned_cols=116 Identities=32% Similarity=0.544 Sum_probs=112.3
Q ss_pred CCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEeccCHHHHHHHHH
Q 013773 13 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLE 92 (436)
Q Consensus 13 D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~ 92 (436)
+..|||+||+|++++||+ ||+|+||.|||++|+|||+||+|||++||||+|+|| ++||||||+|++++||++|+
T Consensus 25 ~~~~RykmP~~~v~~eGk----KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~ 98 (148)
T 2d74_B 25 HHKSRFEVPGALVTIEGN----KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE--GRRVVLQGRFTPYLIANKLK 98 (148)
T ss_dssp SSSCCCCCCCCCEEEETT----EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE--TTEEEESSCCCHHHHHHHHH
T ss_pred CCCCceecCCCeEEEecC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHH
Confidence 457999999999999998 999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhccccCCCCCCCceEEEecCceeeeeccccCcccccCch
Q 013773 93 NFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMR 135 (436)
Q Consensus 93 ~fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~ 135 (436)
+||++||+|++|+||||.|++ ++++++++|.|||++++|+++
T Consensus 99 ~yI~~yVlC~~C~sPdT~L~k-~~r~~~l~C~ACGa~~~V~~~ 140 (148)
T 2d74_B 99 KYIKEYVICPVCGSPDTKIIK-RDRFHFLKCEACGAETPIQHL 140 (148)
T ss_dssp HHHHHHSSCSSSCCTTCCCCB-SSSSBCCCCSSSCCCCCCCC-
T ss_pred HHHHHEEECCCCCCcCcEEEE-eCCEEEEEecCCCCCccccch
Confidence 999999999999999999999 889999999999999999975
No 4
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=8.1e-46 Score=328.89 Aligned_cols=115 Identities=29% Similarity=0.548 Sum_probs=111.7
Q ss_pred CCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEeccCHHHHHHHHH
Q 013773 13 DAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLE 92 (436)
Q Consensus 13 D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~ 92 (436)
...|||+||+|++++||+ ||+|+||.|||++|+|||+||+|||++||||+|+|| ++|+||||+|++++||++|+
T Consensus 23 ~~~~R~~mp~~~v~~eG~----kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~ 96 (138)
T 1nee_A 23 FETKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRAILQGKFTHFLINERIE 96 (138)
T ss_dssp CCCCCCCCSCCCCCEETT----EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB--TTTEEEESSCSSSHHHHHHH
T ss_pred CCccceecCCCeEEEECC----cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHH
Confidence 447999999999999999 899999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhccccCCCCCCCceEEEecCceeeeeccccCcccccCc
Q 013773 93 NFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDM 134 (436)
Q Consensus 93 ~fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (436)
+||++||+|++|+||||.|++ ++++++++|.|||++++|++
T Consensus 97 ~yI~~yVlC~~C~sPdT~l~k-~~r~~~l~C~ACGa~~~V~~ 137 (138)
T 1nee_A 97 DYVNKFVICHECNRPDTRIIR-EGRISLLKCEACGAKAPLKN 137 (138)
T ss_dssp HHHTHHHHHTCCSSCSSCCEE-ETTTTEEECSTTSCCCCSCC
T ss_pred HHHhhEEECCCCCCcCcEEEE-cCCeEEEEccCCCCCcccCC
Confidence 999999999999999999999 88999999999999999974
No 5
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=1.1e-46 Score=334.83 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=105.8
Q ss_pred CCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEeccCHHHHHHHH
Q 013773 12 GDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLL 91 (436)
Q Consensus 12 ~D~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l 91 (436)
.+.+|||+||+|++++||+ ||+|+||.|||++|+|||+||+|||++||||+|+||+ ++|+||||+|++++||++|
T Consensus 22 ~~~~~R~kmp~~~v~~eG~----kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-~~rlii~G~~~~~~i~~~L 96 (139)
T 3cw2_K 22 GRKEGTQSLPNMIILNIGN----TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD-KGELVIQGKFSSQVINTLM 96 (139)
T ss_dssp SSCSSCCSCCCCCCCCCSS----SCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS-SCCCTTTCSCCSCCSCSTT
T ss_pred cCCccceecCCCeEEEECC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC-CCeEEEEeeeCHHHHHHHH
Confidence 4788999999999999999 8999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHhhccccCCCCCCCceEEEecCceeeeeccccCcccccCc
Q 013773 92 ENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDM 134 (436)
Q Consensus 92 ~~fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (436)
++||++||+|++|+||||.|++ ++++++++|.|||++++|++
T Consensus 97 ~~yI~~yVlC~~C~sPdT~l~k-~~r~~~l~C~ACGa~~~V~~ 138 (139)
T 3cw2_K 97 ERFLKAYVECSTCKSLDTILKK-EKKSWYIVCLACGAQTPVKP 138 (139)
T ss_dssp TTTSSCCSSCCSSSSSCCCSCS-SCSTTTSSCCC---------
T ss_pred HHHHHHeeECCCCCCcCcEEEE-eCCeEEEEecCCCCCCccCC
Confidence 9999999999999999999999 88999999999999999974
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=233.30 Aligned_cols=148 Identities=21% Similarity=0.337 Sum_probs=125.0
Q ss_pred cchHHHHHHHHHHHhc-CC---ChhHHHHHHHhcCC-ChHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHhcCChHHH
Q 013773 285 QSHENLVDELKANLQK-SI---TGMQLQTILGSLSG-SAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQ 359 (436)
Q Consensus 285 ~~~~e~v~~l~~~~~~-~~---s~~ei~~~~~~l~l-s~~~~~~vl~eaLf~~v~~~i~k~I~k~~~lL~r~~~~~~~~Q 359 (436)
+.++.|+.||++.... +. ++-+|...+.++++ ..++++.++|++||+. +++++|++|++||.+|++ +..+|
T Consensus 11 ~~~d~~~~~i~~~~~~~~~~~~~~~~i~~~a~~l~~~~~~~~~~vl~~~lf~~---~i~~~l~k~~~lL~~~~~-~~~~q 86 (177)
T 2ful_A 11 TQLDEYGEWILEQAGEDKENLPSDVELYKKAAELDVLNDPKIGCVLAQCLFDE---DIVNEIAEHNAFFTKILV-TPEYE 86 (177)
T ss_dssp HHHHHHHHHHHHHHCTTSTTCCCHHHHHHHHHHTTCTTCTTHHHHHHHHSCST---THHHHTTSCHHHHHHHCC-SHHHH
T ss_pred hHHHHHHHHHHHhcccccccccchHHHHHHHHhcCcchhhHHHHHHHHHHhch---hHHHHHHHHHHHHHHHcC-CcHHH
Confidence 4689999999986321 21 11278888888886 4589999999999986 899999999999999998 89999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHhhccccchHHHHHHhhccCCCCcc---hhHHHHhhhHHHHHhcccccccCC
Q 013773 360 LLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSK---NSQIWKNAKPFIEWLQSAESESEE 436 (436)
Q Consensus 360 ~~lL~alE~~~~~~~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s~~~~~---~~~vrk~a~pFI~WLeEAEEEsee 436 (436)
+++|++||.||..+++.+++.|++||+.|||.|||+||+|++||++++++++. .+++|++++|||+||++||||||+
T Consensus 87 ~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEsee 166 (177)
T 2ful_A 87 KNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDE 166 (177)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHcccccccc
Confidence 99999999999756889999999999999999999999999999998877752 357999999999999999987763
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.95 E-value=5.4e-28 Score=228.58 Aligned_cols=146 Identities=25% Similarity=0.377 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHhcCC---ChhHHHHHHHhcCCChHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHhcCChHHHHHH
Q 013773 286 SHENLVDELKANLQKSI---TGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLL 362 (436)
Q Consensus 286 ~~~e~v~~l~~~~~~~~---s~~ei~~~~~~l~ls~~~~~~vl~eaLf~~v~~~i~k~I~k~~~lL~r~~~~~~~~Q~~l 362 (436)
.++.|+.|++..-..|. ...+|...+.++++ .++++.+|+++||+. +++++|++|++||.+|++++...|+++
T Consensus 8 ~~d~~~~~~~~~~~~~~~~~~~~~i~~ea~~l~~-k~~~~~vl~e~lf~~---~i~~~l~k~~~lL~~~~~~~~~~Q~~l 83 (208)
T 2iu1_A 8 RVNILFDFVKKKKEEGVIDSSDKEIVAEAERLDV-KAMGPLVLTEVLFNE---KIREQIKKYRRHFLRFCHNNKKAQRYL 83 (208)
T ss_dssp HHHHHHHHHHHHHHHTCGGGCHHHHHHHHHHTTC-GGGHHHHHHHHHCST---THHHHHHHTHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHhcch-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 47788899888322233 24589999999998 578899999999986 899999999999999997567999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhhccccchHHHHHHhhccCCCCcc---hhHHHHhhhHHHHHhcccccccC
Q 013773 363 LRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSK---NSQIWKNAKPFIEWLQSAESESE 435 (436)
Q Consensus 363 L~alE~~~~~~~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s~~~~~---~~~vrk~a~pFI~WLeEAEEEse 435 (436)
|++||.||..++|.+++.|+.||+.|||.|||+|++|++||++++++++. .+++|++++|||+||++||||||
T Consensus 84 L~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEEs~ 159 (208)
T 2iu1_A 84 LHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESS 159 (208)
T ss_dssp HHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHccccccc
Confidence 99999998776788999999999999999999999999999998887762 24799999999999999998765
No 8
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.95 E-value=8.1e-28 Score=223.22 Aligned_cols=146 Identities=21% Similarity=0.270 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCCCh----hHHHHHHHhcCCChHHHHHHHHHHHHhhhhh-------------hHHHHHHhhHHHHHHH
Q 013773 289 NLVDELKANLQKSITG----MQLQTILGSLSGSAQEKMTALFEALFDGVEK-------------GFSKEVVKKKNFLGAA 351 (436)
Q Consensus 289 e~v~~l~~~~~~~~s~----~ei~~~~~~l~ls~~~~~~vl~eaLf~~v~~-------------~i~k~I~k~~~lL~r~ 351 (436)
+.+.-|.+.+..+.+. .||+++++++|++.++++.+++.++|+.+.. .+.++|++|+++|.+|
T Consensus 17 Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ll~~~ 96 (182)
T 3jui_A 17 EVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNY 96 (182)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 4444454444455543 4899999999999999999999999987521 4567899999999999
Q ss_pred hcCChHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhccccchHHHHHHhhccCCCCcc-hhHHHHhhhHHHHHhccc
Q 013773 352 VAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSK-NSQIWKNAKPFIEWLQSA 430 (436)
Q Consensus 352 ~~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s~~~~~-~~~vrk~a~pFI~WLeEA 430 (436)
++ +...|+++|++||.||.. ++.+++.|+.||+.|||.|||+||+|++||+++++.+.. ...+|++++|||+||+||
T Consensus 97 ~~-~~~~q~~lL~ale~~~~~-~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi~WL~eA 174 (182)
T 3jui_A 97 IK-RAADHLEALAAIEDFFLE-HEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEA 174 (182)
T ss_dssp CC-SHHHHHHHHHHHHHHHHH-CGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-CHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhcc
Confidence 99 899999999999999976 688899999999999999999999999999998876532 237899999999999999
Q ss_pred ccccCC
Q 013773 431 ESESEE 436 (436)
Q Consensus 431 EEEsee 436 (436)
||||||
T Consensus 175 EEEs~e 180 (182)
T 3jui_A 175 EEESSE 180 (182)
T ss_dssp HC----
T ss_pred CcccCC
Confidence 998774
No 9
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.95 E-value=1.5e-27 Score=222.63 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhcCCCh----hHHHHHHHhcCCChHHHHHHHHHHHHhhhhh-----------hHHHHHHhhHHHHHHH
Q 013773 287 HENLVDELKANLQKSITG----MQLQTILGSLSGSAQEKMTALFEALFDGVEK-----------GFSKEVVKKKNFLGAA 351 (436)
Q Consensus 287 ~~e~v~~l~~~~~~~~s~----~ei~~~~~~l~ls~~~~~~vl~eaLf~~v~~-----------~i~k~I~k~~~lL~r~ 351 (436)
+.+++.-|.+.+..|.+. .+|+.+++++|++.++++.+++.++|..+.. .+.+.|++|++||.+|
T Consensus 23 ~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~~~ 102 (189)
T 1paq_A 23 EKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQ 102 (189)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGGT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 446677777777766655 4788899999999999999999999987621 3567799999999999
Q ss_pred hcCChHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHhhccccchHHHHHHhhccCCCCcchhHHHHhhhHHHHHhccc
Q 013773 352 VAEDEGLQLLLLRAIEAFCG-KSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSA 430 (436)
Q Consensus 352 ~~~~~~~Q~~lL~alE~~~~-~~~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s~~~~~~~~vrk~a~pFI~WLeEA 430 (436)
++ +.++|+++|++||.||. .++|.+++.|++||+.|||.|||+||+|++||++++... ...++|++++|||+||++|
T Consensus 103 ~~-~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~-~~~~v~~~~~~Fi~WL~eA 180 (189)
T 1paq_A 103 AF-DEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDP-RYDEVKKLTVKWVEWLQNA 180 (189)
T ss_dssp CC-SHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCG-GGHHHHHHHHHHHHHHHHT
T ss_pred Hc-CcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchH-HHHHHHHHHHHHHHHHhcc
Confidence 98 89999999999999998 457899999999999999999999999999999876322 3458999999999999999
Q ss_pred ccccCC
Q 013773 431 ESESEE 436 (436)
Q Consensus 431 EEEsee 436 (436)
||||||
T Consensus 181 EeEs~~ 186 (189)
T 1paq_A 181 DEESSS 186 (189)
T ss_dssp C-----
T ss_pred Cccccc
Confidence 988764
No 10
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=186.44 Aligned_cols=113 Identities=15% Similarity=0.297 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHHHhhhhh---------------------hHHHHHHhhHHHHHHHhcCChHHHHHHHHHHHHHHhcCCh
Q 013773 317 SAQEKMTALFEALFDGVEK---------------------GFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSS 375 (436)
Q Consensus 317 s~~~~~~vl~eaLf~~v~~---------------------~i~k~I~k~~~lL~r~~~~~~~~Q~~lL~alE~~~~~~~~ 375 (436)
+.++++.+++.++|..+.+ .+.++|++|+++|.+|++++.++|+++|++||.||.. ++
T Consensus 35 s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~-~~ 113 (168)
T 3d3m_A 35 VDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN-SN 113 (168)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-Cc
Confidence 6789999999999976633 2346799999999999983489999999999999987 66
Q ss_pred hhHHHHHHHHHHHhhccccchHHHHHHhhccCCCCcchhHHHHhhhHHHHHhccc
Q 013773 376 YATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSA 430 (436)
Q Consensus 376 ~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s~~~~~~~~vrk~a~pFI~WLeEA 430 (436)
.+++.|+.||+.|||.|||+||+|++||+++++.+...+++|++++|||+||+||
T Consensus 114 ~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~~~~~~Fi~WL~eA 168 (168)
T 3d3m_A 114 FPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 168 (168)
T ss_dssp CCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 7889999999999999999999999999988655434578999999999999987
No 11
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=184.28 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHHHHhc----CCChHHHHHHHHHHHHhhhh--hh-------------------HHHH
Q 013773 286 SHENLVDELKANLQKSITGMQLQTILGSL----SGSAQEKMTALFEALFDGVE--KG-------------------FSKE 340 (436)
Q Consensus 286 ~~~e~v~~l~~~~~~~~s~~ei~~~~~~l----~ls~~~~~~vl~eaLf~~v~--~~-------------------i~k~ 340 (436)
++.++...|.+++..+.++.+|....+.. +++.+..+.+|+.+++..+. ++ ..+.
T Consensus 196 ~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~ 275 (364)
T 3l6a_A 196 PLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQL 275 (364)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHH
Confidence 34566667777777777777777666552 35677888999999998762 11 1356
Q ss_pred HHhhHHHHHHHhcCChHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHhhccccchHHHHHHhhccCCCCcchhHHHHh
Q 013773 341 VVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKS-SSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKN 419 (436)
Q Consensus 341 I~k~~~lL~r~~~~~~~~Q~~lL~alE~~~~~~-~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s~~~~~~~~vrk~ 419 (436)
|++|+++|.+|+++..+.|+++|+|||.||+.. .| .+.++.||+.|||.|||+||+|++||++.++.++....+|++
T Consensus 276 l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~--~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~ 353 (364)
T 3l6a_A 276 LLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFP--KGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQ 353 (364)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHH
Confidence 899999999999933467999999999999863 33 245789999999999999999999999887666656789999
Q ss_pred hhHHHHHhccc
Q 013773 420 AKPFIEWLQSA 430 (436)
Q Consensus 420 a~pFI~WLeEA 430 (436)
++|||+||+||
T Consensus 354 ~~~Fi~WL~eA 364 (364)
T 3l6a_A 354 VNQWLTWLETA 364 (364)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999987
No 12
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.81 E-value=1.6e-20 Score=140.03 Aligned_cols=52 Identities=29% Similarity=0.440 Sum_probs=49.5
Q ss_pred eEEEeccCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEec
Q 013773 24 ITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGS 81 (436)
Q Consensus 24 ~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~ 81 (436)
++.++|+ ||+|+||.|||++|+|||+|++|||++||||+|++| ++||||||+
T Consensus 1 ~v~~eG~----kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEGN----RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE--GGRLILQRR 52 (52)
T ss_dssp CEEEETT----EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE--TTEEEEECC
T ss_pred CcEEEcC----eEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec--CCEEEEeCC
Confidence 4778988 999999999999999999999999999999999999 799999996
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=99.37 E-value=1.7e-13 Score=94.59 Aligned_cols=35 Identities=43% Similarity=0.896 Sum_probs=33.4
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcccccCc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDM 134 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (436)
|+|++|+||||.|++ ++++++++|+|||++++|++
T Consensus 1 VlC~~C~~peT~l~~-~~~~~~l~C~aCG~~~~v~~ 35 (36)
T 1k81_A 1 VICRECGKPDTKIIK-EGRVHLLKCMACGAIRPIRM 35 (36)
T ss_dssp CCCSSSCSCEEEEEE-ETTEEEEEEETTTEEEEECC
T ss_pred CCCcCCCCCCcEEEE-eCCcEEEEhhcCCCcccccc
Confidence 899999999999999 88999999999999999974
No 14
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.36 E-value=1.6e-12 Score=130.77 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHHHHh----cCCChHHHHHHHHHHHHhhh-hh-----hHHHHHHhhHHHHHHHhcCC
Q 013773 286 SHENLVDELKANLQKSITGMQLQTILGS----LSGSAQEKMTALFEALFDGV-EK-----GFSKEVVKKKNFLGAAVAED 355 (436)
Q Consensus 286 ~~~e~v~~l~~~~~~~~s~~ei~~~~~~----l~ls~~~~~~vl~eaLf~~v-~~-----~i~k~I~k~~~lL~r~~~~~ 355 (436)
+..++...|.+.+..+.++++|...... .+++.++++.+++.++|..+ .+ ...+.+++|.++|.+|++ +
T Consensus 207 ~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~pll~~~~~-~ 285 (339)
T 1ug3_A 207 PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLC-D 285 (339)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSSCEECHHHHHHHHHHHHHHCC-S
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHcC-C
Confidence 4567888888888878888777766654 45678999999999999762 21 134678999999999998 8
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhccccchHHHHHHhhccC
Q 013773 356 EGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGL 407 (436)
Q Consensus 356 ~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~s 407 (436)
...|+++|++||.||... ....+.|..|++.|||.|||+||+|++||+...
T Consensus 286 ~~~ql~~L~alQ~~~~~~-~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~d 336 (339)
T 1ug3_A 286 EQKELQALYALQALVVTL-EQPPNLLRMFFDALYDEDVVKEDAFYSWESSKD 336 (339)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCTTHHHHHHHHHHHTTSSCHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHhCcchhhHHHHHHHHhcCC
Confidence 999999999999999863 345678999999999999999999999998743
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=93.97 E-value=0.57 Score=51.79 Aligned_cols=117 Identities=11% Similarity=0.178 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHHHHhcCCC--h----------HHHHHHHHHHHHhhhhh---hHHHHHHhhHHHHH
Q 013773 285 QSHENLVDELKANLQKSITGMQLQTILGSLSGS--A----------QEKMTALFEALFDGVEK---GFSKEVVKKKNFLG 349 (436)
Q Consensus 285 ~~~~e~v~~l~~~~~~~~s~~ei~~~~~~l~ls--~----------~~~~~vl~eaLf~~v~~---~i~k~I~k~~~lL~ 349 (436)
.|+......|...+....++.+|...+....-+ . ...+.+++++++....+ .+...|.+|+.+|+
T Consensus 476 ~p~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~GskS~SH~~~~lery~~~lk 555 (771)
T 1h2v_C 476 LPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFK 555 (771)
T ss_dssp STTHHHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHH
T ss_pred CcchHHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 377778888888887667888888888774311 0 14566778888764333 46678999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhccccchHHHHHHhhcc
Q 013773 350 AAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEG 406 (436)
Q Consensus 350 r~~~~~~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~LYd~DIleEE~Il~W~~k~ 406 (436)
.++. ++..|..+|.++-+|... +|. ....|+..|-..+||+-.+|..|.=..
T Consensus 556 ~l~~-~~~~q~~il~~v~~~W~~-~~q---~~~ividkll~~~iv~p~~Vv~w~f~~ 607 (771)
T 1h2v_C 556 TLAE-SDEGKLHVLRVMFEVWRN-HPQ---MIAVLVDKMIRTQIVDCAAVANWIFSS 607 (771)
T ss_dssp HHTS-SHHHHHHHHHHHHHHHTT-CHH---HHHHHHHHHHHTTSSCHHHHHHHHTSG
T ss_pred HHcC-CHHHHHHHHHHHHHHHhc-CCc---eEehHHHHHHhcCCCCHHHHHHHHcCc
Confidence 9998 889999999999999865 566 355678888899999999999998443
No 16
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=88.89 E-value=1.8 Score=36.27 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=60.3
Q ss_pred CceeccCCCCCCCCccc------ccCCCceEEEeccCCCce--EEEechHHHHHHhCCCchhHHHHHHhhhcccccccCC
Q 013773 1 MALLNIGADNRGDAFYR------YKMPKMITKIEGRGNGIK--TNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 72 (436)
Q Consensus 1 Ma~ini~~~~~~D~~~R------ykmp~~~~k~eG~gng~k--T~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~ 72 (436)
|++-|. ..-|||+- =..|.+.++++-| ||-| |+|.+|.. .-++.-+.|.|...+|+.+++-..
T Consensus 1 m~~~~~---~~~dpf~~~~~~~~~~~~~V~Ir~~~R-~g~K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~ 71 (108)
T 2ogh_A 1 MSIENL---KSFDPFADTGDDETATSNYIHIRIQQR-NGRKTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKD 71 (108)
T ss_dssp CCSSCC---SCCCCCCCCCCCCCCCSCSEEEEEECC-SSSCCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECC
T ss_pred Cccccc---CCCCccccccccccCCCCeEEEEEEEc-cCCceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecC
Confidence 664444 23477754 3456788999866 6545 56788862 458999999999999999999531
Q ss_pred ---CCeEEEEeccCHHHHHHHHHHH
Q 013773 73 ---TGTSLVNGSHDTAKLAGLLENF 94 (436)
Q Consensus 73 ---~~~~ii~G~~~~~~l~~~l~~f 94 (436)
.....|+|-|...-.+=|+..+
T Consensus 72 ~~~g~~I~iQGD~r~~v~~~L~~~g 96 (108)
T 2ogh_A 72 PEMGEIIQLQGDQRAKVCEFMISQL 96 (108)
T ss_dssp TTSSCEEEEESSCHHHHHHHHHHHH
T ss_pred CCCceEEEEcCCHHHHHHHHHHHcC
Confidence 1289999999877666666554
No 17
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=83.68 E-value=0.87 Score=33.51 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=25.3
Q ss_pred ccccCCCCCCCceEEEe------cCceeeeeccccCccc
Q 013773 98 YVQCYGCGNPETEIIIT------KTQMIQLKCAACGFVS 130 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~ 130 (436)
.|.||.|++.+....-. ...++|..|..||++-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 58899999977765541 2357899999999863
No 18
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=82.71 E-value=1.2 Score=32.31 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=25.9
Q ss_pred ccccCCCCCCCceEEEe------cCceeeeeccccCcc
Q 013773 98 YVQCYGCGNPETEIIIT------KTQMIQLKCAACGFV 129 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~ 129 (436)
-+.||.|++++..+... +.-++|..|..||++
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 46899999999987752 246789999999986
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.40 E-value=0.74 Score=32.90 Aligned_cols=31 Identities=29% Similarity=0.699 Sum_probs=21.7
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcccc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSD 131 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~ 131 (436)
.+.||.|+++ .|+.+ ...-.+.|..||..-+
T Consensus 5 ~~~CP~C~~~--~l~~d-~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYD-PERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEE-TTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEc-CCCCeEECcccCCccc
Confidence 3579999985 46663 2334589999999543
No 20
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=81.28 E-value=0.42 Score=37.07 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=25.4
Q ss_pred HhhccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 95 IKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 95 i~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
+-....||.|+.| |..+ ...-.+.|.+||...+|.
T Consensus 5 LLeiL~CP~ck~~---L~~~-~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 5 LLDILACPICKGP---LKLS-ADKTELISKGAGLAYPIR 39 (69)
T ss_dssp GGGTCCCTTTCCC---CEEC-TTSSEEEETTTTEEEEEE
T ss_pred HHhheeCCCCCCc---CeEe-CCCCEEEcCCCCcEecCc
Confidence 4456889999986 4442 223467899999999885
No 21
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=80.20 E-value=2 Score=37.03 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCCceEEEeccCCCce--EEEechHHHHHHhCCCchhHHHHHHhhhcccccccCC---CCeEEEEeccCHHHHHHHHHH
Q 013773 20 MPKMITKIEGRGNGIK--TNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK---TGTSLVNGSHDTAKLAGLLEN 93 (436)
Q Consensus 20 mp~~~~k~eG~gng~k--T~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~---~~~~ii~G~~~~~~l~~~l~~ 93 (436)
.|.+.++++-| ||-| |+|.+|.. .-++.-+.|.|...+|+.|++-.. .+...|+|-|...-.+=|+..
T Consensus 41 ~~~V~Ir~~~R-~grK~VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 41 EDYIHIRIQQR-NGRKTLTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp TTCEECCCCCS-SSSCCBCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred CCeEEEEEEee-cCCccEEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 35677888854 6655 77888862 447899999999999999998531 237999999987655544444
No 22
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=77.16 E-value=1 Score=33.59 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=20.9
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
..||.|++.. |+. ....-.+.|..||..
T Consensus 12 ~~Cp~C~~~~--lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAI--LVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSC--CEE-CSSSCCEECTTTCCE
T ss_pred ccCcCCCCCc--eeE-eCCCCeEEeCCCCCE
Confidence 4799999865 666 334456999999976
No 23
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=74.45 E-value=1.7 Score=27.62 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.0
Q ss_pred ccCHHHHHHHHHHHHhhccc
Q 013773 81 SHDTAKLAGLLENFIKKYVQ 100 (436)
Q Consensus 81 ~~~~~~l~~~l~~fi~~yVl 100 (436)
+|+.++|+.+||.-|+.||-
T Consensus 8 rfdekqieelldncietfva 27 (31)
T 4h62_V 8 RFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 58889999999999999985
No 24
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=72.46 E-value=1.1 Score=31.38 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=21.5
Q ss_pred CCCceEEEe--cCceeeeeccccCcccccC
Q 013773 106 NPETEIIIT--KTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 106 ~peT~l~~~--k~~~~~~~C~aCG~~~~v~ 133 (436)
||.|.|+.+ +...-|..|.+||..-.+.
T Consensus 1 n~n~~ii~~ple~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 1 NPNAQLIEDPLDKPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCSSCCCCCCCCCCCCEEECTTTCCEEETT
T ss_pred CCccchhhcccCccccchhhcccCCcchHH
Confidence 688888875 4577899999999765443
No 25
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=72.11 E-value=1.2 Score=34.35 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=23.8
Q ss_pred hccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 97 KYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 97 ~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
..+.||.|+.| |..+. ..-.+.|.+||...||.
T Consensus 7 ~iL~CP~ck~~---L~~~~-~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 7 DILVCPVTKGR---LEYHQ-DKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCCBCSSSCCB---CEEET-TTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CeEeC-CCCEEEcCCCCcEecCC
Confidence 45789999985 44421 22357899999999985
No 26
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=71.23 E-value=1.7 Score=36.99 Aligned_cols=39 Identities=18% Similarity=0.496 Sum_probs=29.8
Q ss_pred cccCCCCCCCceEEEe------cCceeeeeccccCcccccCchhh
Q 013773 99 VQCYGCGNPETEIIIT------KTQMIQLKCAACGFVSDVDMRDK 137 (436)
Q Consensus 99 VlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~~v~~~~k 137 (436)
+.||.|++.+..+.-. +.-++|..|..||++-......|
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~~~ 117 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNK 117 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTTCC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCChhh
Confidence 7899999999887752 24678999999999865554433
No 27
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=70.62 E-value=1.4 Score=33.98 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=23.8
Q ss_pred hccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 97 KYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 97 ~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
..+.||.|+.| |..+. ..-.+.|.+||...||.
T Consensus 7 ~iL~CP~ck~~---L~~~~-~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 7 EILVCPLCKGP---LVFDK-SKDELICKGDRLAFPIK 39 (68)
T ss_dssp EECBCTTTCCB---CEEET-TTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CeEeC-CCCEEEcCCCCcEecCC
Confidence 45789999985 44422 22357899999999985
No 28
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=69.81 E-value=1.9 Score=33.51 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.4
Q ss_pred hccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 97 KYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 97 ~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
..+.||.|+.| |..+. ..-.+.|.+||...||.
T Consensus 7 ~iL~CP~ck~~---L~~~~-~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 7 DILVCPVCKGR---LEFQR-AQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCCBCTTTCCB---EEEET-TTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCc---CEEeC-CCCEEEcCCCCceecCC
Confidence 45789999995 55522 22367899999999985
No 29
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=69.43 E-value=2 Score=42.93 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=31.0
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcc---cccCchhhhhhhh
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFV---SDVDMRDKLNTFI 142 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~---~~v~~~~kl~~~i 142 (436)
+.||.|+++.|.|+. +-..-.+.|..||-. +.+|...---+|-
T Consensus 22 ~~Cp~C~~~~~~lv~-D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~ 67 (345)
T 4bbr_M 22 LTCPECKVYPPKIVE-RFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67 (345)
T ss_dssp CCCSSCCCSSCCEEE-EGGGTEEEETTTCBEEESCCBCHHHHHTTTS
T ss_pred CcCCCCCCCCCceeE-ECCCCcEEeCCCCCCccCcccccCccccCCC
Confidence 479999996677877 334558899999965 6677655555553
No 30
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=68.60 E-value=0.95 Score=31.92 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.2
Q ss_pred ccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 100 QCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 100 lC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
.|..|+..+|-+-+ ++..-..-|+|||-.
T Consensus 3 ~C~~C~tt~Tp~WR-~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWR-RNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCE-ECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccc-cCCCCCcccHHHHHH
Confidence 59999999999988 332223789999954
No 31
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=67.24 E-value=1.7 Score=39.58 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.3
Q ss_pred ccccCCCCCCCceEEEe------cCceeeeeccccCccc
Q 013773 98 YVQCYGCGNPETEIIIT------KTQMIQLKCAACGFVS 130 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~~ 130 (436)
-+.||.|++++..+.-. ..-++|..|..||++-
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 35899999999876541 2357899999999863
No 32
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=66.42 E-value=3.4 Score=34.66 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=25.8
Q ss_pred cccCCCCCCCceEEE------ecCceeeeeccccCccc
Q 013773 99 VQCYGCGNPETEIII------TKTQMIQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~peT~l~~------~k~~~~~~~C~aCG~~~ 130 (436)
+.||.|++.+..+.- ++.-++|..|..||++-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 899999999987764 13467889999999874
No 33
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=65.87 E-value=1.1 Score=32.15 Aligned_cols=30 Identities=27% Similarity=0.665 Sum_probs=23.2
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
..|..|+..+|-+-+ ++..-..-|+|||-.
T Consensus 5 ~~C~~C~tt~Tp~WR-~gp~G~~LCNaCGl~ 34 (46)
T 1gnf_A 5 RECVNCGATATPLWR-RDRTGHYLCNACGLY 34 (46)
T ss_dssp CCCTTTCCCCCSSCB-CCTTCCCBCSHHHHH
T ss_pred CCCCCcCCCCCCcCc-cCCCCCccchHHHHH
Confidence 469999999999988 442223789999964
No 34
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=65.83 E-value=2.7 Score=38.39 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=28.8
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcc---cccCchhhhhhh
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFV---SDVDMRDKLNTF 141 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~---~~v~~~~kl~~~ 141 (436)
..||.|++..+.|+. +...-.+.|..||.. +.+|....--+|
T Consensus 22 ~~CPECGs~~t~IV~-D~erGE~VCsdCGLVLEEriID~GPEWRAF 66 (197)
T 3k1f_M 22 LTCPECKVYPPKIVE-RFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66 (197)
T ss_dssp CCCTTTCCSSCCEEE-EGGGTEEEETTTCBBCCCCCBCHHHHHHHH
T ss_pred eECcCCCCcCCeEEE-eCCCCEEEEcCCCCCcCCceeECCCCCcCc
Confidence 479999996688887 334457889999976 445544444343
No 35
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=64.83 E-value=2.8 Score=32.68 Aligned_cols=34 Identities=26% Similarity=0.608 Sum_probs=25.4
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcccccCchhhh
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDKL 138 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~kl 138 (436)
|-|| |++. ++. +.+.-...|. ||+.-.+...-.|
T Consensus 5 v~C~-C~~~---~~~-~~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 5 FRCD-CGRA---LYS-REGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEET-TSCC---EEE-ETTCSEEEET-TTEEEECCSSSCB
T ss_pred EECC-CCCE---EEE-cCCCcEEECC-CCCeeeeceEEEE
Confidence 6799 9998 444 4566789998 9999888854443
No 36
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.55 E-value=3.1 Score=41.01 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=26.0
Q ss_pred hccccCCCCCCC-ceEEEe---cCceeeeeccccCcccccC
Q 013773 97 KYVQCYGCGNPE-TEIIIT---KTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 97 ~yVlC~~C~~pe-T~l~~~---k~~~~~~~C~aCG~~~~v~ 133 (436)
..-.||.|+++= ..++.. .++.-++.|.-||..-.+.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~ 221 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV 221 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec
Confidence 357899999954 445442 2567799999999875553
No 37
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=63.01 E-value=5.4 Score=32.06 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.1
Q ss_pred HhhccccCCCCCCCceEEE-e-cCceeeeeccccCccccc
Q 013773 95 IKKYVQCYGCGNPETEIII-T-KTQMIQLKCAACGFVSDV 132 (436)
Q Consensus 95 i~~yVlC~~C~~peT~l~~-~-k~~~~~~~C~aCG~~~~v 132 (436)
+.++-.||-|+...+.-++ + +.+.-.+.|..||.....
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 3456789999999765555 3 457889999999987654
No 38
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=62.75 E-value=7.9 Score=31.63 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=22.0
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCccccc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVSDV 132 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (436)
.+||-|.--.-.+.++.+ .-.-.|-+||..+.+
T Consensus 38 ~~CPfh~e~~pSf~V~~~-k~~~~Cf~cg~gGd~ 70 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPE-KQIFHCFGCGAGGNA 70 (103)
T ss_dssp ECCSSSCCSSCCEEEETT-TTEEEETTTCCEECH
T ss_pred EECCCCCCCCCcEEEEcC-CCEEEECCCCCCCCH
Confidence 489999743336777432 235789999987654
No 39
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=62.38 E-value=1.4 Score=33.90 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHhhccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 94 FIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 94 fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
.+-....||.|+.| |..+. ..-.+.|.+||...||.
T Consensus 6 ~LLeiL~CP~ck~~---L~~~~-~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 6 QLLEVLACPKDKGP---LRYLE-SEQLLVNERLNLAYRID 41 (67)
T ss_dssp GGTCCCBCTTTCCB---CEEET-TTTEEEETTTTEEEEEE
T ss_pred HHHHHhCCCCCCCc---CeEeC-CCCEEEcCCCCccccCC
Confidence 34557889999995 33321 12257799999998885
No 40
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=58.71 E-value=4.7 Score=39.60 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=25.5
Q ss_pred ccccCCCCCCCceEEEe------cCceeeeeccccCcc
Q 013773 98 YVQCYGCGNPETEIIIT------KTQMIQLKCAACGFV 129 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~------k~~~~~~~C~aCG~~ 129 (436)
-+.|+.|+..++.+.-- ..-++|..|..||++
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 46899999999977541 245789999999986
No 41
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=58.24 E-value=6.8 Score=39.61 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=22.1
Q ss_pred ccCCCCCCCceEEEecCceeeeeccccCccccc
Q 013773 100 QCYGCGNPETEIIITKTQMIQLKCAACGFVSDV 132 (436)
Q Consensus 100 lC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (436)
+||-|+--.-++.++.++ -+-+|-.||..+.+
T Consensus 36 ~CPfh~ektpSf~V~~~k-~~~~CFgCg~gGd~ 67 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSK-QIFKCFGCGVGGDA 67 (407)
T ss_dssp CCSSSCCSSCCEEEETTT-TEEEETTTCCEECH
T ss_pred eCcCCCCCCCeEEEECCC-CEEEECCCCCCCCH
Confidence 899997543457774322 25789999987654
No 42
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=57.79 E-value=6.8 Score=33.99 Aligned_cols=16 Identities=25% Similarity=0.835 Sum_probs=12.5
Q ss_pred ccccCCCCCCCceEEE
Q 013773 98 YVQCYGCGNPETEIII 113 (436)
Q Consensus 98 yVlC~~C~~peT~l~~ 113 (436)
|..||.|++|+..++.
T Consensus 107 ~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 107 FLACPKCGSHDFEVVK 122 (139)
T ss_dssp GCSCSSSSCCCEEEEE
T ss_pred CCcCccccCCccEEec
Confidence 5778888888887765
No 43
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=57.20 E-value=2.5 Score=32.52 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=28.6
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCccc--ccCchhhhhhhhh
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVS--DVDMRDKLNTFIL 143 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~--~v~~~~kl~~~i~ 143 (436)
-|.||.|.|.-|.+.. -.....|..||..= |-..+-+|..-|+
T Consensus 7 ~VKCp~C~niq~VFSh---A~tvV~C~~Cg~~L~~PTGGKA~l~~~i~ 51 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDH---PSTIVKCIICGRTVAEPTGGKGNIKAEII 51 (66)
T ss_dssp EEECTTTCCEEEEESS---CSSCEECSSSCCEEEECCSSSCEECSEEE
T ss_pred EEECCCCCCceEEEec---CceEEEcccCCCEEeecCCcceeeehhHH
Confidence 4899999997665543 45678999999863 3333444444433
No 44
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=56.57 E-value=1.5 Score=33.46 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=23.3
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
..|..|+..+|-+-. ++..-..-|+|||-.-
T Consensus 8 ~~C~~C~tt~Tp~WR-~gp~G~~LCNACGl~~ 38 (63)
T 3dfx_A 8 TSCANCQTTTTTLWR-RNANGDPVCNACGLYY 38 (63)
T ss_dssp CCCTTTCCSCCSSCC-CCTTSCCCCHHHHHHH
T ss_pred CcCCCcCCCCCCccC-CCCCCCchhhHHHHHH
Confidence 469999999999988 4322237899999543
No 45
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=55.99 E-value=2.1 Score=33.33 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=22.8
Q ss_pred cccCCCCCCCceEEEec-CceeeeeccccCcc
Q 013773 99 VQCYGCGNPETEIIITK-TQMIQLKCAACGFV 129 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k-~~~~~~~C~aCG~~ 129 (436)
..|..|+..+|-+-+.. ... ..-|.|||-.
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~-g~LCNACGl~ 39 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKE-GIQCNACFIY 39 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSS-CCCSSHHHHH
T ss_pred CcCCccCCCCCCccccCCCCC-CccchHHHHH
Confidence 67999999999999831 222 2789999954
No 46
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=55.43 E-value=13 Score=30.61 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=48.5
Q ss_pred CCCceEEEeccCCCce--EEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCC---eEEEEeccCHHHHHHHHHH
Q 013773 20 MPKMITKIEGRGNGIK--TNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTG---TSLVNGSHDTAKLAGLLEN 93 (436)
Q Consensus 20 mp~~~~k~eG~gng~k--T~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~---~~ii~G~~~~~~l~~~l~~ 93 (436)
-+.+.++++-| ||-| |+|.+|. -.-++.-+.|.|...+|+.|++-...+ ...|+|-|...-.+=|+..
T Consensus 16 ~~~v~I~~~~R-~g~K~VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 16 QTHIHIRVEQR-RGRKCFTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp SCCEEEEEEEE-ETTEEEEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEEec-cCCccEEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 45677888776 4434 5677884 355788999999999999999843111 8999999987655544443
No 47
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=54.20 E-value=3.4 Score=40.98 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=23.5
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
-..||.|+++.+.++. +...-.+.|..||..
T Consensus 21 ~~~Cp~Cg~~~~~iv~-D~~~G~~vC~~CG~V 51 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE-RFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCCSTTCCSCCCCCC-CSSSCSCCCSSSCCC
T ss_pred CCcCcCCCCCCCceEE-ECCCCCEecCCCCeE
Confidence 3579999998667776 334457899999985
No 48
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.43 E-value=8.1 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=19.9
Q ss_pred hccccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 97 KYVQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 97 ~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
.+-.||.|+++- .+.- .. --+.|..||.+-
T Consensus 18 ~~k~CP~CG~~~-fm~~-~~--~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGV-FMAD-HG--DRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSC-EEEE-CS--SEEECSSSCCEE
T ss_pred ecccCCCCCCce-EEec-CC--CeEECCCCCCEE
Confidence 456799999863 2332 22 357999999763
No 49
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=51.42 E-value=8.9 Score=36.69 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccccCCCCCCCceEEEecCceeeeeccccCcccc
Q 013773 87 LAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSD 131 (436)
Q Consensus 87 l~~~l~~fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~ 131 (436)
-...|..|-..+--|+.|+.|-.. ....+...|.+||....
T Consensus 96 ~a~~l~~w~~~~~fC~~CG~~~~~----~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 96 RGVQLAEFYRSHKYCGYCGHEMYP----SKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHHHHHTTSBCTTTCCBEEE----CSSSSCEEESSSSCEEC
T ss_pred HHHHHHhhhhcCCccccCCCcCcc----CCCceeeeCCCCCCEec
Confidence 345577788899999999988432 23556889999998754
No 50
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=51.22 E-value=9.4 Score=32.36 Aligned_cols=34 Identities=21% Similarity=0.664 Sum_probs=24.5
Q ss_pred ccCCCCC---CCceEEEe-cCc---eeeeeccccCcccccC
Q 013773 100 QCYGCGN---PETEIIIT-KTQ---MIQLKCAACGFVSDVD 133 (436)
Q Consensus 100 lC~~C~~---peT~l~~~-k~~---~~~~~C~aCG~~~~v~ 133 (436)
+|..|++ |-.+..+. .++ .+...|..||+..-.+
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 7999999 55333321 333 6899999999987666
No 51
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=50.85 E-value=2.5 Score=32.42 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=22.8
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
..|..|+.-+|-+-.. +..-..-|.|||-..
T Consensus 10 ~~C~~C~t~~Tp~WR~-gp~G~~LCNaCGl~~ 40 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRR-NPEGQPLCNACGLFL 40 (66)
T ss_dssp CCCTTTCCCCCSSCEE-ETTTEEECHHHHHHH
T ss_pred CCCCCCCCCCCCcCCc-CCCCCCccHHHHHHH
Confidence 4799999999999883 222226799999543
No 52
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.43 E-value=3.8 Score=31.22 Aligned_cols=29 Identities=28% Similarity=0.728 Sum_probs=22.2
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
-|.||.|.+.-|.+. .-.....|..||..
T Consensus 15 ~VkCp~C~~~q~VFS---ha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFS---HPATKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEES---SCSSCEECSSSCCE
T ss_pred EEECCCCCCeeEEEe---cCCeEEEccCcCCE
Confidence 489999998765543 34567899999986
No 53
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=48.92 E-value=6.9 Score=25.68 Aligned_cols=13 Identities=38% Similarity=0.951 Sum_probs=10.5
Q ss_pred HhhhHHHHHhccc
Q 013773 418 KNAKPFIEWLQSA 430 (436)
Q Consensus 418 k~a~pFI~WLeEA 430 (436)
++|+.||.||...
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 5788999999753
No 54
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=48.52 E-value=10 Score=32.37 Aligned_cols=34 Identities=24% Similarity=0.603 Sum_probs=24.4
Q ss_pred ccCCCCC---CCceEEEe-cCc---eeeeeccccCcccccC
Q 013773 100 QCYGCGN---PETEIIIT-KTQ---MIQLKCAACGFVSDVD 133 (436)
Q Consensus 100 lC~~C~~---peT~l~~~-k~~---~~~~~C~aCG~~~~v~ 133 (436)
+|..|++ |-.+..+. .++ .+...|..||+..-.+
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 7999999 55333321 333 6889999999987766
No 55
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=47.92 E-value=10 Score=35.51 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=22.4
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
...||.|+.-+. +.+..++ ...|..||+..
T Consensus 14 ~~~CP~Cg~~d~-~~~~~dg--~~~C~~Cg~~~ 43 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLFSDG--HTFCYVCEKWT 43 (255)
T ss_dssp EECCSSSCCSSC-EEEETTS--CEEETTTCCEE
T ss_pred CCcCCCCCCCCC-ceEeCCC--CeecccCCCcC
Confidence 578999999775 5543444 48999999864
No 56
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.03 E-value=1.2e+02 Score=25.39 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=53.4
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCChHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 013773 293 ELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGK 372 (436)
Q Consensus 293 ~l~~~~~~~~s~~ei~~~~~~l~ls~~~~~~vl~eaLf~~v~~~i~k~I~k~~~lL~r~~~~~~~~Q~~lL~alE~~~~~ 372 (436)
-|++++.. .+..|.....+.++++ +.-..++..++-..+..+--.....-..||..++...--..-++..|+++++..
T Consensus 13 ll~EY~~~-~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~ 90 (129)
T 2nsz_A 13 LLKEYLLS-GDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 90 (129)
T ss_dssp HHHHHHHH-CCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhh
Confidence 34445443 4556777777888875 333333333333332211101112223455544431111222344444444322
Q ss_pred ------CChhhHHHHHHHHHHHhhccccchHHH
Q 013773 373 ------SSSYATKEVALVLKALYDSDVLEEEYI 399 (436)
Q Consensus 373 ------~~~~l~~~~~~ILk~LYd~DIleEE~I 399 (436)
.-|..-..+..++-.....++|+-.-+
T Consensus 91 l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~ 123 (129)
T 2nsz_A 91 IPDINLDVPHSYSVLERFVEECFQAGIISKQLR 123 (129)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHH
Confidence 146777788899999999999986444
No 57
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=45.13 E-value=6.2 Score=31.53 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=22.6
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
-|.|+.|.+.-|.+.. -.....|..||..=
T Consensus 34 ~VkCp~C~~~q~VFSh---a~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSH---AQTAVTCESCSTIL 63 (82)
T ss_dssp EEECTTSCSCEEEESB---CSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeEEEec---CCeEEEccccCCEE
Confidence 4899999997665543 45578899999763
No 58
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=45.12 E-value=4.4 Score=32.36 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=22.4
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
-|.||.|.|.-|... .-.....|..||..
T Consensus 32 ~VkCp~C~n~q~VFS---hA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFS---NAQSTIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEET---TCSSCEECSSSCCE
T ss_pred EeECCCCCCeeEEEe---cCccEEEccCCCCE
Confidence 489999999765544 34567899999987
No 59
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=44.17 E-value=12 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.628 Sum_probs=24.7
Q ss_pred HhhccccCCCCCCCceEEEecCceeeeecc--ccCcccccC
Q 013773 95 IKKYVQCYGCGNPETEIIITKTQMIQLKCA--ACGFVSDVD 133 (436)
Q Consensus 95 i~~yVlC~~C~~peT~l~~~k~~~~~~~C~--aCG~~~~v~ 133 (436)
+-...-||.|+.| |..+. -.+.|. +||...+|.
T Consensus 7 lL~iL~CP~c~~~---L~~~~---~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 7 LLEILACPACHAP---LEERD---AELICTGQDCGLAYPVR 41 (56)
T ss_dssp CTTSCCCSSSCSC---EEEET---TEEEECSSSCCCEEEEE
T ss_pred HHhheeCCCCCCc---ceecC---CEEEcCCcCCCcEEeeE
Confidence 3456789999996 55523 357899 999998874
No 60
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=43.38 E-value=8.4 Score=32.22 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=24.8
Q ss_pred cccCCCCCCCceEEEec-CceeeeeccccCcccccCc
Q 013773 99 VQCYGCGNPETEIIITK-TQMIQLKCAACGFVSDVDM 134 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k-~~~~~~~C~aCG~~~~v~~ 134 (436)
-.||.|+|.= .+...+ ++.+.+.|..||+..+++.
T Consensus 5 ~FCp~Cgn~L-~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNML-YPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCCC-EECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCEe-eEcccCCCCeeEEECCCCCCeEEcCC
Confidence 4699999972 222211 3567889999999998874
No 61
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=43.17 E-value=5.5 Score=35.29 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=24.6
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCccccc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDV 132 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (436)
|--||.|+.+.+...-+........|..||.....
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~ 37 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQ 37 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEECC
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCccCC
Confidence 66899999998865542234456789999965443
No 62
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.91 E-value=27 Score=29.60 Aligned_cols=82 Identities=15% Similarity=0.294 Sum_probs=33.5
Q ss_pred echHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEeccCHHHHHHHHHHHHhhccccCCCCCCCceEEEecCce
Q 013773 39 VNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQM 118 (436)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~~fi~~yVlC~~C~~peT~l~~~k~~~ 118 (436)
+|+.-+-..|++.-+...+- ..-.|..|.|- -|| |+--...+.++... -..-..||.|+. +.+...--+
T Consensus 9 ~~~~~~~~~~~~~~~~Makr-tKkVGi~GkyG---~RY---GaslRK~vkkiE~~-q~akytCPfCGk--~~vKR~avG- 77 (116)
T 3cc2_Z 9 PNLEGLMWPLGGQQTTMASK-SGKTGSSGRFG---ARY---GRVSRRRVAEIESE-MNEDHACPNCGE--DRVDRQGTG- 77 (116)
T ss_dssp --------------------------CGGGGT---TCS---CHHHHHHHHHHHHH-HHSCEECSSSCC--EEEEEEETT-
T ss_pred CchhhhhhhhhhhHHHHHhc-cCccccccccc---ccc---chHHHHHHHHHHHH-hccCCcCCCCCC--ceeEecCce-
Confidence 45555566666664433322 22356667663 355 55444455444322 233457999997 456552223
Q ss_pred eeeeccccCccccc
Q 013773 119 IQLKCAACGFVSDV 132 (436)
Q Consensus 119 ~~~~C~aCG~~~~v 132 (436)
.-.|..||..-.-
T Consensus 78 -IW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 78 -IWQCSYCDYKFTG 90 (116)
T ss_dssp -EEEETTTCCEEEC
T ss_pred -eEECCCCCCEEEC
Confidence 4599999988433
No 63
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=42.58 E-value=5.2 Score=34.69 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=0.0
Q ss_pred cccCCCCCCCceEEE------ecCceeeeeccccCccc
Q 013773 99 VQCYGCGNPETEIII------TKTQMIQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~peT~l~~------~k~~~~~~~C~aCG~~~ 130 (436)
+.||.|++.+..+.. ++.-++|..|..||++-
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w 130 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRW 130 (133)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEe
Confidence 799999999986653 13467899999999863
No 64
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=42.50 E-value=2.3e+02 Score=26.84 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=61.5
Q ss_pred cchHHHHHHHHHHHhcCCChhHHHHHHHhcCCChHHHHHHHHHHHHhhhh---------hhHHHHHHhhHHH-HHHHhcC
Q 013773 285 QSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVE---------KGFSKEVVKKKNF-LGAAVAE 354 (436)
Q Consensus 285 ~~~~e~v~~l~~~~~~~~s~~ei~~~~~~l~ls~~~~~~vl~eaLf~~v~---------~~i~k~I~k~~~l-L~r~~~~ 354 (436)
+|..+|+-.|--..-...+.+.+...++.++++...+...++.++...-. ..++..+.+|.+- ..+++.
T Consensus 2 ~P~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD- 80 (248)
T 1uw4_B 2 PPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVD- 80 (248)
T ss_dssp CHHHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHH-
Confidence 35666666554222223355677888888999877777777777665310 0233334444332 222332
Q ss_pred ChHHHHHHHHHHHHHHhcCC----hhhHHHHHHHHHHHhhccccchHHHHHH
Q 013773 355 DEGLQLLLLRAIEAFCGKSS----SYATKEVALVLKALYDSDVLEEEYIVQW 402 (436)
Q Consensus 355 ~~~~Q~~lL~alE~~~~~~~----~~l~~~~~~ILk~LYd~DIleEE~Il~W 402 (436)
.+|..|...+.... ...+ .-.+.|-.||+..+|++.+|+.=
T Consensus 81 ------~vlE~Ir~gLE~n~~~~nQrRi-a~vkyLgELYny~lv~s~vIf~~ 125 (248)
T 1uw4_B 81 ------GVLEDIRLGMEVNQPKFNQRRI-SSAKFLGELYNYRMVESAVIFRT 125 (248)
T ss_dssp ------HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHTTSSCHHHHHHH
T ss_pred ------HHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHhcCCChHHHHHH
Confidence 24444433332222 2222 35677999999999999999654
No 65
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=42.15 E-value=17 Score=36.31 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhc------cccCCCCCCC--ceEEE-------e-----cCceeeeeccccCcccccC
Q 013773 84 TAKLAGLLENFIKKY------VQCYGCGNPE--TEIII-------T-----KTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 84 ~~~l~~~l~~fi~~y------VlC~~C~~pe--T~l~~-------~-----k~~~~~~~C~aCG~~~~v~ 133 (436)
.--|+.||.=|=..| -.|+.|+++. |...+ + -+++-..+|..||+..--+
T Consensus 99 d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFP 168 (335)
T 1x3z_A 99 DYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFP 168 (335)
T ss_dssp HHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccC
Confidence 346788888886664 3699999986 33320 0 0145678899999976543
No 66
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=42.10 E-value=6.1 Score=32.44 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.3
Q ss_pred CCCceEEEe--cCceeeeeccccCcccc
Q 013773 106 NPETEIIIT--KTQMIQLKCAACGFVSD 131 (436)
Q Consensus 106 ~peT~l~~~--k~~~~~~~C~aCG~~~~ 131 (436)
+|.|.|+.+ +...-|..|.+||..=.
T Consensus 59 n~nt~ii~~~Ld~~~~YRvCn~CGkPI~ 86 (96)
T 3mhs_E 59 NPNAQLIEDPLDKPIQYRVCEKCGKPLA 86 (96)
T ss_dssp CTTCCCCSSTTSSSCCCEEETTTCCEEC
T ss_pred CCcchhhcccCCCcccchhhhccCCcee
Confidence 678887764 34577999999997543
No 67
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.78 E-value=19 Score=27.71 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=20.3
Q ss_pred ccCCCCCCCce-----EEEe-cCc------eeeeeccccCccccc
Q 013773 100 QCYGCGNPETE-----IIIT-KTQ------MIQLKCAACGFVSDV 132 (436)
Q Consensus 100 lC~~C~~peT~-----l~~~-k~~------~~~~~C~aCG~~~~v 132 (436)
.||.|+..++. +..+ ++. +....|..||..-.-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 69999986442 1121 332 235689999987543
No 68
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=40.64 E-value=11 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=20.7
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCccccc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDV 132 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (436)
--.||.|+.+ ++. .-..-.++|..||..-.-
T Consensus 27 ~y~Cp~CG~~---~v~-r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGED---RVD-RQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCE---EEE-EEETTEEEETTTCCEEEC
T ss_pred cCcCCCCCCc---cee-ccCCCeEECCCCCCEecC
Confidence 3479999973 333 223447899999997443
No 69
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=39.74 E-value=20 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.461 Sum_probs=24.8
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
..-||.|+|.=.--.-...+...+.|..||+..+++
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 357999998432111102467789999999998876
No 70
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.58 E-value=6 Score=31.89 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=21.7
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
|.|+.|.+.-|.+. .-.....|..||..=
T Consensus 37 VkCp~C~~~~~VFS---hA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 37 VKCQGCFNITTVFS---HSQTVVVCPGCQTVL 65 (86)
T ss_dssp EECTTTCCEEEEET---TCSSCCCCSSSCCCC
T ss_pred EECCCCCCeeEEEe---cCCcEEEccCCCCEe
Confidence 99999998655443 345678999999763
No 71
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.09 E-value=22 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=11.0
Q ss_pred cc-ccCCCCCCCceEEE
Q 013773 98 YV-QCYGCGNPETEIII 113 (436)
Q Consensus 98 yV-lC~~C~~peT~l~~ 113 (436)
+. .||.|++|.+.++-
T Consensus 89 ~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 89 DYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp TTCCCSSSSSCCCEEEE
T ss_pred CCCcCccccCCCcEEec
Confidence 45 67777777776654
No 72
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.05 E-value=1.9e+02 Score=24.97 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=55.2
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCChHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHhcCChHHHHHHHHHHH------
Q 013773 294 LKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFDGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIE------ 367 (436)
Q Consensus 294 l~~~~~~~~s~~ei~~~~~~l~ls~~~~~~vl~eaLf~~v~~~i~k~I~k~~~lL~r~~~~~~~~Q~~lL~alE------ 367 (436)
|++++.. .+..|.....+.++++ +.-..++..++...+...--.....-..||..++...--..-++..|++
T Consensus 16 L~EY~~~-~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~l 93 (152)
T 2ion_A 16 LKEYLLS-GDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEI 93 (152)
T ss_dssp HHHHHHH-CCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhC
Confidence 4444443 4567777788888875 3333333333333322110111122234555444311112223333444
Q ss_pred -HHHhcCChhhHHHHHHHHHHHhhccccchHHHHH
Q 013773 368 -AFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQ 401 (436)
Q Consensus 368 -~~~~~~~~~l~~~~~~ILk~LYd~DIleEE~Il~ 401 (436)
.+... -|..-..+..++-.....++|.-..+..
T Consensus 94 dDl~lD-iP~A~~~la~~v~~ai~~g~l~~~~~~~ 127 (152)
T 2ion_A 94 PDINLD-VPHSYSVLERFVEECFQAGIISKQLRDL 127 (152)
T ss_dssp HHHHHH-STTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred hHhccC-ccchHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 44433 4777778999999999999999766654
No 73
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=36.83 E-value=14 Score=23.90 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=9.7
Q ss_pred HhhhHHHHHhcc
Q 013773 418 KNAKPFIEWLQS 429 (436)
Q Consensus 418 k~a~pFI~WLeE 429 (436)
.+|+.||+||..
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 468899999964
No 74
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=36.83 E-value=11 Score=36.20 Aligned_cols=108 Identities=18% Similarity=0.315 Sum_probs=62.5
Q ss_pred CceEEEechHH-------HHHHhCCCchhHHHHHHhhhcccccccCC-CCeEEEEeccCHHHHHHHHHHHHhhcc-----
Q 013773 33 GIKTNIVNMVD-------IAKALARPASYTTKYFGCELGAQSKFDEK-TGTSLVNGSHDTAKLAGLLENFIKKYV----- 99 (436)
Q Consensus 33 g~kT~i~N~~~-------ia~~L~R~p~~~~ky~~~ELg~~~~~~~~-~~~~ii~G~~~~~~l~~~l~~fi~~yV----- 99 (436)
+..++.+||.+ +|..|-..|..++.+|..-+-.-..++.. .=.+.+.|-.....|.++=-.+|.++|
T Consensus 40 ~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~vr~~~~~~~~~iR~L~~~~igkLV~v~Gi 119 (279)
T 1ltl_A 40 NVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNVIPLRELRSKFIGKFVAVDGI 119 (279)
T ss_dssp SCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCTTCCCCCCEEEEECCSCBCCGGGCCGGGTTSEEEEEEE
T ss_pred CCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhccccCCeeEEEEEECCCCCCCcccCChhhCCCEEEEEEE
Confidence 35899999986 56688888888888886544221111110 013334554444555555556666655
Q ss_pred ----------------ccCCCCCCCceEEEecCc-eeeeeccccCcccccCchhhhhhhh
Q 013773 100 ----------------QCYGCGNPETEIIITKTQ-MIQLKCAACGFVSDVDMRDKLNTFI 142 (436)
Q Consensus 100 ----------------lC~~C~~peT~l~~~k~~-~~~~~C~aCG~~~~v~~~~kl~~~i 142 (436)
.|..|+. .+.+..+.++ ..-..|..||..+ ....+..+.|+
T Consensus 120 V~r~S~V~p~~~~~~f~C~~C~~-~~~v~~~~~~~~~P~~Cp~C~~~~-f~l~~~~s~f~ 177 (279)
T 1ltl_A 120 VRKTDEIRPRIVKAVFECRGCMR-HHAVTQSTNMITEPSLCSECGGRS-FRLLQDESEFL 177 (279)
T ss_dssp EEEECCCEEEEEEEEEEETTTCC-EEEEECSSSSCCCCSCCTTTCCCC-EEECGGGCEEE
T ss_pred EEEecceEEEEEEEEEEcCCCCC-EEEEEecCCcccCCCcCCCCCCCC-cEEeccccEEE
Confidence 6888984 2322221111 1235788898876 55556666665
No 75
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=36.41 E-value=20 Score=29.71 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=20.5
Q ss_pred cccCCCCCCCceEE-----Ee-cCc------eeeeeccccCcccc
Q 013773 99 VQCYGCGNPETEII-----IT-KTQ------MIQLKCAACGFVSD 131 (436)
Q Consensus 99 VlC~~C~~peT~l~-----~~-k~~------~~~~~C~aCG~~~~ 131 (436)
-.||.|+...+... .+ ++. +....|..||..-.
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 37999998754321 11 332 24567999998743
No 76
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=35.55 E-value=16 Score=24.27 Aligned_cols=13 Identities=38% Similarity=0.795 Sum_probs=10.4
Q ss_pred HhhhHHHHHhccc
Q 013773 418 KNAKPFIEWLQSA 430 (436)
Q Consensus 418 k~a~pFI~WLeEA 430 (436)
.+++.||+||...
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4688999999753
No 77
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=34.48 E-value=6.7 Score=33.06 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=29.3
Q ss_pred hccccCCCCCCCceEEEecCceeeeeccccCcc----cccCchhhhhhhhhcCC
Q 013773 97 KYVQCYGCGNPETEIIITKTQMIQLKCAACGFV----SDVDMRDKLNTFILKNP 146 (436)
Q Consensus 97 ~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~----~~v~~~~kl~~~i~k~p 146 (436)
.|..|-.|+++..+-.. .+..-...|.+|-.. +.+...+-..+|.|+.+
T Consensus 4 ~~~~C~eC~~~~~d~~l-~~~F~~~VC~~Cr~~~~~~~liTkt~ak~dYlL~d~ 56 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYL-MDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDC 56 (111)
T ss_dssp CCEECTTTCCEESCSSS-TTTTSCCCCTTTCSSSSSCCCEEHHHHTTTTTCCSS
T ss_pred CCCccccCCChhhHHHH-HHhCCeeechhhcccccccccccHHHHHHHHcCCch
Confidence 47789999987643332 334446788888643 23333344456777654
No 78
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.84 E-value=18 Score=23.51 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.5
Q ss_pred HhhhHHHHHhcc
Q 013773 418 KNAKPFIEWLQS 429 (436)
Q Consensus 418 k~a~pFI~WLeE 429 (436)
.+++.||+||..
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 468899999963
No 79
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.05 E-value=17 Score=25.08 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=10.0
Q ss_pred HhhhHHHHHhcc
Q 013773 418 KNAKPFIEWLQS 429 (436)
Q Consensus 418 k~a~pFI~WLeE 429 (436)
.+|+.||+||..
T Consensus 17 ~aak~fv~wL~~ 28 (39)
T 1jrj_A 17 EAVRLFIEWLKN 28 (39)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 468899999974
No 80
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=30.98 E-value=17 Score=31.37 Aligned_cols=37 Identities=16% Similarity=0.436 Sum_probs=24.3
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcccccCc
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDM 134 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~ 134 (436)
+-.||.|+|-=.--.-..++.+.+.|..||+..+++.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS 60 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC
Confidence 4569999993111010013567899999999887764
No 81
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=30.86 E-value=16 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=22.0
Q ss_pred cccCCCC---------CCCceEEEecCceeeeeccccCcccccCchhh
Q 013773 99 VQCYGCG---------NPETEIIITKTQMIQLKCAACGFVSDVDMRDK 137 (436)
Q Consensus 99 VlC~~C~---------~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~k 137 (436)
-.|+.|. .|+| .-.-.|.+||...+.++..+
T Consensus 18 WVCpICsfsN~v~s~fdp~~--------~~lPpC~aCGIkP~~~~i~~ 57 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDT--------LPTPICINCGVPADYELTKS 57 (76)
T ss_dssp EECTTTCCEEEESSCCCTTC--------SSCCBCTTTCCBCCHHHHGG
T ss_pred eECccccccCcCccccCCCC--------CCCCcccccCccCCHHHHHH
Confidence 3699998 4443 55778999999888775333
No 82
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=30.81 E-value=21 Score=23.21 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=9.8
Q ss_pred HhhhHHHHHhcc
Q 013773 418 KNAKPFIEWLQS 429 (436)
Q Consensus 418 k~a~pFI~WLeE 429 (436)
+.++.||.||..
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 578899999953
No 83
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.19 E-value=9.1 Score=29.59 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=21.7
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcccccCchhh
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDK 137 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~k 137 (436)
-+|+.|+..-. +. .. --.+|..||++-....|.+
T Consensus 29 Y~C~~CG~~~e-~~--~~--d~irCp~CG~RILyK~R~~ 62 (70)
T 1twf_L 29 YICAECSSKLS-LS--RT--DAVRCKDCGHRILLKARTK 62 (70)
T ss_dssp EECSSSCCEEC-CC--TT--STTCCSSSCCCCCBCCCCS
T ss_pred EECCCCCCcce-eC--CC--CCccCCCCCceEeEecCCC
Confidence 47999997422 11 12 2358999999766665543
No 84
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=30.10 E-value=20 Score=25.08 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=11.0
Q ss_pred HhhhHHHHHhcccc
Q 013773 418 KNAKPFIEWLQSAE 431 (436)
Q Consensus 418 k~a~pFI~WLeEAE 431 (436)
.+++.||.||...-
T Consensus 17 ~~akdFv~WL~~~k 30 (42)
T 2b4n_A 17 IHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 56889999997543
No 85
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.55 E-value=23 Score=26.58 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=17.3
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
.+.|+.|+.. +| ...|..||..+.+.
T Consensus 6 mr~C~~CgvY--TL--------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 6 MKKCPKCGLY--TL--------KEICPKCGEKTVIP 31 (60)
T ss_dssp CEECTTTCCE--ES--------SSBCSSSCSBCBCC
T ss_pred ceeCCCCCCE--ec--------cccCcCCCCcCCCC
Confidence 4679999432 11 23499999887776
No 86
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=28.98 E-value=33 Score=34.95 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=23.3
Q ss_pred cccccCCCceEEEec-cCCCceEEEec-hHHHHHHhCCC
Q 013773 15 FYRYKMPKMITKIEG-RGNGIKTNIVN-MVDIAKALARP 51 (436)
Q Consensus 15 ~~Rykmp~~~~k~eG-~gng~kT~i~N-~~~ia~~L~R~ 51 (436)
+...++|.|.+.|.. .+.|.=|.|.. +..|...|.+.
T Consensus 86 tati~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~ 124 (404)
T 2qkd_A 86 SATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQD 124 (404)
T ss_dssp TCEEEEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTT
T ss_pred CcEEEeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhh
Confidence 566788999999985 24454444433 34556666665
No 87
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.23 E-value=13 Score=27.14 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=19.4
Q ss_pred HhhccccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 95 IKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 95 i~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
....-+|+.|+.. . ..-.-.|.-||+.
T Consensus 11 ~~~k~iCpkC~a~-----~---~~gaw~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGAT-----N---PWGAKKCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCE-----E---CTTCSSCSSSSSC
T ss_pred HhCCccCCCCCCc-----C---CCCceecCCCCCc
Confidence 3445679999986 2 2336789999998
No 88
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.62 E-value=36 Score=27.06 Aligned_cols=9 Identities=22% Similarity=0.733 Sum_probs=6.1
Q ss_pred cccCCCCCC
Q 013773 99 VQCYGCGNP 107 (436)
Q Consensus 99 VlC~~C~~p 107 (436)
+.||.|.+|
T Consensus 3 ~~CP~C~~~ 11 (81)
T 2jrp_A 3 ITCPVCHHA 11 (81)
T ss_dssp CCCSSSCSC
T ss_pred CCCCCCCCc
Confidence 567777765
No 89
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.34 E-value=17 Score=27.21 Aligned_cols=25 Identities=20% Similarity=0.652 Sum_probs=17.8
Q ss_pred hhccccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 96 KKYVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 96 ~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
-..|.|+.|+.+ + +....|..||.=
T Consensus 28 p~l~~c~~cG~~-----~----~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 28 PNLTECPQCHGK-----K----LSHHICPNCGYY 52 (60)
T ss_dssp CCCEECTTTCCE-----E----CTTBCCTTTCBS
T ss_pred CCceECCCCCCE-----e----CCceEcCCCCcC
Confidence 457889999876 2 346678888854
No 90
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.61 E-value=33 Score=27.94 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCceEEEecCceeeeeccccCccccc
Q 013773 85 AKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDV 132 (436)
Q Consensus 85 ~~l~~~l~~fi~~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v 132 (436)
..+.++...=-.+| .||.|+.. .+.+ ...-+-+|..||..-.-
T Consensus 24 K~vkkie~~q~~ky-~CpfCgk~--~vkR--~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 24 KQIKKMEVSQHSKY-FCEFCGKF--AVKR--KAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp HHHHHHHHHHHSCB-CCTTTCSS--CBEE--EETTEEECSSSCCEEEC
T ss_pred HHHHHHHHHHhccc-cCcccCCC--eeEe--cCcceEEcCCCCCEEeC
Confidence 33444433333445 79999987 3444 12335689999987544
No 91
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.32 E-value=12 Score=31.60 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
..|..|+..+|.+-. ++..-..-|.|||-..
T Consensus 60 ~~C~~C~t~~tp~WR-r~~~g~~lCNaCgl~~ 90 (115)
T 4hc9_A 60 TSCANCQTTTTTLWR-RNANGDPVCNACGLYY 90 (115)
T ss_dssp CCCTTTCCSCCSSCE-ECTTSCEECHHHHHHH
T ss_pred ccCCCcCCCCcceeE-ECCCCCCcchHHHHHH
Confidence 689999999999988 3322256799999543
No 92
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.23 E-value=12 Score=31.58 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=23.4
Q ss_pred cccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 99 VQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 99 VlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
-.|..|+..+|-+-. .+..-..-|.|||-.
T Consensus 6 ~~C~~Cg~~~Tp~WR-r~~~g~~lCnaCgl~ 35 (115)
T 4hc9_A 6 RECVNCGATSTPLWR-RDGTGHYLCNACGLY 35 (115)
T ss_dssp CCCTTTCCSCCSSCE-ECTTSCEECHHHHHH
T ss_pred CCCCCCCCccCCcce-ECCCCCCcCcchhhh
Confidence 469999999999988 433335799999963
No 93
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=25.88 E-value=25 Score=29.76 Aligned_cols=65 Identities=9% Similarity=-0.044 Sum_probs=44.6
Q ss_pred ceEEEec--cCCCceEEEechHHHHHHhCCCchhHHHHHHhhhcccccccCCCCeEEEEeccCHHHHHHHHHH
Q 013773 23 MITKIEG--RGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHDTAKLAGLLEN 93 (436)
Q Consensus 23 ~~~k~eG--~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l~~~l~~ 93 (436)
+.++++- |++=.=|+|.+|..- .-++.-+.|+|...+|+.|++- ++...|+|.|...-.+=|+..
T Consensus 33 V~I~~er~gR~GK~VT~V~Gl~~~----~~dlk~laK~LKkk~acgGtVk--~~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 33 VRIQRQTSGRKGKGVCLITGVDLD----DAELTKLAAELKKKCGCGGAVK--DGVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp EEEEECCCSSSSCCCEEEECCCSC----HHHHHHHHHHHTTSSSSCCBCC--SSCEEECSCCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCeEEEEeCCcCc----hhhHHHHHHHHHHHhcCCcEEc--CCEEEEeCcHHHHHHHHHHHc
Confidence 4565662 222235788888631 1135668899999999999994 689999999987655555444
No 94
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=23.44 E-value=57 Score=25.72 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=26.3
Q ss_pred echHHHHHHhCCCchhHHHHHHhhhcccc
Q 013773 39 VNMVDIAKALARPASYTTKYFGCELGAQS 67 (436)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~ 67 (436)
.++.+||+.++-+|.|+.+.|-..+|..-
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~~G~s~ 47 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRSRGYSP 47 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHTSSCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHhCcCH
Confidence 46899999999999999999999999754
No 95
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.17 E-value=31 Score=25.91 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=16.2
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcccccC
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVD 133 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~ 133 (436)
...|+.|+. .+| .-.|..||..+.+.
T Consensus 5 mr~C~~Cg~--YTL--------k~~CP~CG~~t~~a 30 (60)
T 2aus_D 5 IRKCPKCGR--YTL--------KETCPVCGEKTKVA 30 (60)
T ss_dssp CEECTTTCC--EES--------SSBCTTTCSBCEES
T ss_pred ceECCCCCC--EEc--------cccCcCCCCccCCC
Confidence 356888832 111 22489999887766
No 96
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.01 E-value=35 Score=25.82 Aligned_cols=35 Identities=31% Similarity=0.629 Sum_probs=24.1
Q ss_pred ccccCCCCCCCceEEEecCceeeeeccccCcccccCchhh
Q 013773 98 YVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRDK 137 (436)
Q Consensus 98 yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~k 137 (436)
.-+|..|+..-. + + ..-.++|.-||++-....|.+
T Consensus 21 ~Y~C~~Cg~~~~---l-~-~~~~iRC~~CG~RILyK~Rt~ 55 (63)
T 3h0g_L 21 IYLCADCGARNT---I-Q-AKEVIRCRECGHRVMYKMRTK 55 (63)
T ss_dssp CCBCSSSCCBCC---C-C-SSSCCCCSSSCCCCCBCCCCC
T ss_pred EEECCCCCCeee---c-C-CCCceECCCCCcEEEEEecCC
Confidence 458999976543 3 2 234689999999877765543
No 97
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.90 E-value=60 Score=25.30 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=26.2
Q ss_pred echHHHHHHhCCCchhHHHHHHhhhcccc
Q 013773 39 VNMVDIAKALARPASYTTKYFGCELGAQS 67 (436)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~ 67 (436)
.++.+||+.++-++.|+.+.|..++|..-
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~~g~s~ 48 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKNFGIPF 48 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 46899999999999999999999999753
No 98
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.12 E-value=57 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=17.8
Q ss_pred hccccCCCCCCCceEEEecCceeeeeccccCcc
Q 013773 97 KYVQCYGCGNPETEIIITKTQMIQLKCAACGFV 129 (436)
Q Consensus 97 ~yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~ 129 (436)
.-.+||.|+.+ |.. .++ +..|.+|+..
T Consensus 31 M~~~CP~Cq~e---L~~-~g~--~~hC~~C~~~ 57 (101)
T 2jne_A 31 MELHCPQCQHV---LDQ-DNG--HARCRSCGEF 57 (101)
T ss_dssp CCCBCSSSCSB---EEE-ETT--EEEETTTCCE
T ss_pred ccccCccCCCc---cee-cCC--EEECccccch
Confidence 34899999986 444 344 2357777764
No 99
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=21.10 E-value=35 Score=34.78 Aligned_cols=32 Identities=25% Similarity=0.706 Sum_probs=21.3
Q ss_pred cccCCCCC-CCceEEEec----Cce--eeeeccccCccc
Q 013773 99 VQCYGCGN-PETEIIITK----TQM--IQLKCAACGFVS 130 (436)
Q Consensus 99 VlC~~C~~-peT~l~~~k----~~~--~~~~C~aCG~~~ 130 (436)
.+||.|+. -.|.+...+ +.+ ....|..||++.
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 58999995 445555422 222 357899999985
No 100
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=20.94 E-value=68 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.2
Q ss_pred echHHHHHHhCCCchhHHHHHHhhhcccc
Q 013773 39 VNMVDIAKALARPASYTTKYFGCELGAQS 67 (436)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~ 67 (436)
.++.+||+.++-++.|+.+.|..++|..-
T Consensus 21 ~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 49 (107)
T 2k9s_A 21 FDIASVAQHVCLSPSRLSHLFRQQLGISV 49 (107)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCcCH
Confidence 46899999999999999999999999754
No 101
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=20.60 E-value=24 Score=28.97 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=12.8
Q ss_pred eeeeccccCcccccC
Q 013773 119 IQLKCAACGFVSDVD 133 (436)
Q Consensus 119 ~~~~C~aCG~~~~v~ 133 (436)
-.+.|..||...||.
T Consensus 52 ~~LvC~~c~~~YPI~ 66 (97)
T 2k5r_A 52 EALITRDRKQVFRIE 66 (97)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred CeEEcCCCCCCcccc
Confidence 368899999999985
No 102
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=20.43 E-value=41 Score=21.54 Aligned_cols=12 Identities=8% Similarity=0.240 Sum_probs=9.5
Q ss_pred HhhhHHHHHhcc
Q 013773 418 KNAKPFIEWLQS 429 (436)
Q Consensus 418 k~a~pFI~WLeE 429 (436)
.+|+.||.||..
T Consensus 17 ~~ak~fl~~l~~ 28 (29)
T 2rrh_A 17 MAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 468899999953
No 103
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.30 E-value=75 Score=28.57 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhh---------ccccCCCCCCCceEEEecCceeeeeccccCccc
Q 013773 85 AKLAGLLENFIKK---------YVQCYGCGNPETEIIITKTQMIQLKCAACGFVS 130 (436)
Q Consensus 85 ~~l~~~l~~fi~~---------yVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~ 130 (436)
..++.+|+++-.. +-.|+.|+..-+ +...--.|..||+..
T Consensus 133 ~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~------g~~~p~~CP~C~~~k 181 (191)
T 1lko_A 133 KRFLDFARNIKEGRVFLREQATKWRCRNCGYVHE------GTGAPELCPACAHPK 181 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEE------EEECCSBCTTTCCBG
T ss_pred HHHHHHHHhhhcccccccCCCceEEECCCCCEee------CCCCCCCCCCCcCCH
Confidence 5666777775443 345999986422 111222899999853
No 104
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=20.13 E-value=68 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=26.0
Q ss_pred echHHHHHHhCCCchhHHHHHHhhhccc
Q 013773 39 VNMVDIAKALARPASYTTKYFGCELGAQ 66 (436)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~ 66 (436)
.++.+||..++-+|.|+.+.|-.++|..
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4699999999999999999999999975
No 105
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=20.12 E-value=72 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=26.3
Q ss_pred echHHHHHHhCCCchhHHHHHHhhhcccc
Q 013773 39 VNMVDIAKALARPASYTTKYFGCELGAQS 67 (436)
Q Consensus 39 ~N~~~ia~~L~R~p~~~~ky~~~ELg~~~ 67 (436)
.++.+||+.++-+|.|+.+.|...+|..-
T Consensus 22 ~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 50 (108)
T 3oou_A 22 MSLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 47899999999999999999999999754
Done!