Query 013775
Match_columns 436
No_of_seqs 256 out of 1270
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 2.8E-52 6E-57 407.5 23.3 209 140-358 41-249 (255)
2 PRK00145 putative inner membra 100.0 8.1E-50 1.7E-54 383.3 22.9 194 151-357 24-217 (223)
3 PRK01622 OxaA-like protein pre 100.0 4.7E-48 1E-52 378.0 23.4 204 140-352 42-250 (256)
4 PRK01318 membrane protein inse 100.0 3.1E-48 6.8E-53 411.1 20.4 201 135-352 299-507 (521)
5 PRK02463 OxaA-like protein pre 100.0 3.6E-47 7.8E-52 379.5 24.3 209 139-357 41-258 (307)
6 TIGR03592 yidC_oxa1_cterm memb 100.0 2.8E-47 6E-52 354.9 20.4 181 157-351 1-181 (181)
7 PF02096 60KD_IMP: 60Kd inner 100.0 2.2E-47 4.7E-52 358.9 19.8 189 157-352 2-196 (198)
8 PRK01001 putative inner membra 100.0 5.4E-46 1.2E-50 398.4 21.9 199 142-351 561-776 (795)
9 COG0706 YidC Preprotein transl 100.0 1.9E-44 4.2E-49 362.1 21.5 209 137-356 89-300 (314)
10 PRK02201 putative inner membra 100.0 4.2E-43 9.1E-48 355.3 24.0 208 140-352 109-341 (357)
11 KOG1239 Inner membrane protein 100.0 1.2E-42 2.7E-47 355.1 21.0 345 79-434 18-368 (372)
12 PRK01315 putative inner membra 100.0 1.2E-42 2.7E-47 349.1 19.7 192 153-351 37-256 (329)
13 PRK03449 putative inner membra 100.0 3E-42 6.5E-47 343.3 22.0 209 136-350 5-267 (304)
14 PRK00247 putative inner membra 100.0 4.1E-39 9E-44 332.0 24.1 220 140-362 6-281 (429)
15 PRK02654 putative inner membra 100.0 5.5E-33 1.2E-37 275.5 19.7 203 138-352 8-342 (375)
16 COG1422 Predicted membrane pro 97.9 0.00031 6.8E-09 66.4 13.2 149 156-361 44-198 (201)
17 PF01956 DUF106: Integral memb 91.8 0.95 2.1E-05 41.6 8.5 98 155-254 12-115 (168)
18 COG1422 Predicted membrane pro 79.8 8.8 0.00019 36.8 7.9 19 182-200 76-94 (201)
19 KOG1239 Inner membrane protein 76.6 8.7 0.00019 40.2 7.6 193 158-360 35-258 (372)
20 PF01956 DUF106: Integral memb 70.1 27 0.00059 32.0 8.5 67 187-253 42-110 (168)
21 PRK12772 bifunctional flagella 57.9 36 0.00077 38.0 8.0 30 194-223 480-509 (609)
22 COG1377 FlhB Flagellar biosynt 57.4 62 0.0013 33.9 9.1 43 174-221 209-251 (363)
23 PRK12721 secretion system appa 55.3 49 0.0011 34.4 8.0 30 194-223 217-246 (349)
24 TIGR01404 FlhB_rel_III type II 54.9 49 0.0011 34.3 7.9 45 175-224 202-246 (342)
25 PRK13109 flhB flagellar biosyn 54.0 54 0.0012 34.2 8.1 29 194-222 226-254 (358)
26 PRK09108 type III secretion sy 53.9 53 0.0012 34.2 8.0 43 175-222 205-247 (353)
27 TIGR00328 flhB flagellar biosy 52.2 59 0.0013 33.8 8.0 30 194-223 217-246 (347)
28 PRK05702 flhB flagellar biosyn 50.8 63 0.0014 33.8 8.0 29 194-222 224-252 (359)
29 PRK08156 type III secretion sy 49.3 69 0.0015 33.5 8.0 30 194-223 212-241 (361)
30 PRK06298 type III secretion sy 48.7 72 0.0016 33.3 8.0 30 194-223 218-247 (356)
31 PF05280 FlhC: Flagellar trans 48.2 27 0.00059 32.8 4.4 39 215-253 37-86 (175)
32 PRK12468 flhB flagellar biosyn 43.5 94 0.002 32.8 8.0 30 194-223 224-253 (386)
33 TIGR03142 cytochro_ccmI cytoch 41.8 97 0.0021 26.8 6.6 61 159-219 3-70 (117)
34 PF07074 TRAP-gamma: Transloco 40.0 1.7E+02 0.0036 27.5 8.1 56 174-229 62-117 (170)
35 PF12794 MscS_TM: Mechanosensi 39.4 4.4E+02 0.0096 27.1 14.3 41 226-267 76-117 (340)
36 PF06695 Sm_multidrug_ex: Puta 37.7 1.6E+02 0.0034 25.8 7.3 48 153-201 11-58 (121)
37 PF09973 DUF2208: Predicted me 32.6 1.7E+02 0.0038 28.8 7.4 84 153-252 20-110 (233)
38 COG3105 Uncharacterized protei 32.6 1.5E+02 0.0032 26.8 6.2 15 158-172 15-29 (138)
39 PRK12773 flhB flagellar biosyn 32.1 1.7E+02 0.0038 32.8 8.0 30 194-223 515-544 (646)
40 TIGR03593 yidC_nterm membrane 31.0 26 0.00056 36.1 1.5 54 101-155 300-366 (366)
41 PF10268 Tmemb_161AB: Predicte 29.8 6.4E+02 0.014 27.6 11.8 28 160-187 316-343 (486)
42 KOG3817 Uncharacterized conser 25.8 2.4E+02 0.0051 29.8 7.2 90 141-233 254-352 (452)
43 KOG2966 Uncharacterized conser 25.5 2.4E+02 0.0051 29.1 7.0 11 1-11 1-11 (325)
44 PF01312 Bac_export_2: FlhB Hr 25.4 97 0.0021 32.1 4.5 38 174-216 204-241 (343)
45 PF05377 FlaC_arch: Flagella a 25.2 1.6E+02 0.0036 22.6 4.5 37 187-230 16-54 (55)
46 PRK13453 F0F1 ATP synthase sub 24.8 5.4E+02 0.012 23.6 9.0 8 153-160 13-20 (173)
47 PF09958 DUF2192: Uncharacteri 24.5 1.4E+02 0.003 29.4 5.1 28 206-236 26-53 (231)
48 COG1133 SbmA ABC-type long-cha 24.0 2.8E+02 0.006 28.8 7.2 116 132-253 106-232 (405)
49 PRK11546 zraP zinc resistance 22.3 6E+02 0.013 23.2 8.8 34 188-221 57-101 (143)
50 COG3105 Uncharacterized protei 22.2 5.6E+02 0.012 23.2 8.0 46 154-202 4-51 (138)
51 PRK11281 hypothetical protein; 21.5 1.5E+03 0.033 27.5 16.0 31 236-267 581-611 (1113)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=2.8e-52 Score=407.48 Aligned_cols=209 Identities=31% Similarity=0.553 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 013775 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQ 219 (436)
Q Consensus 140 v~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~ 219 (436)
+.++.++|+++|.++|.|||++|+++|+++|++++|++++|+++++||+++|||+++||+||++ +|++++++.++|++
T Consensus 41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~--~~~~~~~k~~~e~~ 118 (255)
T PRK02944 41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS--KDQATQQKLQQEMM 118 (255)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999985 37777788899999
Q ss_pred HHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHhhccC
Q 013775 220 NLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299 (436)
Q Consensus 220 ~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el~~~~~ 299 (436)
+|||||||||+++|+|+|+|+|||+++|.+||++.+ +.++||+|| ||+.+|||++||++++++++++.+++....
T Consensus 119 ~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~----l~~~~flW~-dLs~~Dp~~iLPil~~~~~~~~~~~~~~~~ 193 (255)
T PRK02944 119 QLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE----ISKHSFLWF-DLGQADPYYILPIVAGITTFIQQKLMMAGT 193 (255)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH----HhhcCCCcc-ccCcchHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999998865 778999999 999999999999999999999988765321
Q ss_pred CCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcchhHHhhh
Q 013775 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKML 358 (436)
Q Consensus 300 ~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk~l 358 (436)
.. .+..|+.+++++|+++++++.++|+|+.+||++||+|+++|++++++|.||+-.
T Consensus 194 ~~---~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~ 249 (255)
T PRK02944 194 AG---QNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASK 249 (255)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhh
Confidence 11 234577788999999999999999999999999999999999999999999744
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=8.1e-50 Score=383.30 Aligned_cols=194 Identities=28% Similarity=0.515 Sum_probs=175.9
Q ss_pred HhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCCc
Q 013775 151 HNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPL 230 (436)
Q Consensus 151 H~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP~ 230 (436)
|..+|+|||++|+++|+++|++++|++++|.++++||++++||++++++||++ |+++ .++|+++|||||||||+
T Consensus 24 ~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~---d~~~---~~~e~~~Lyk~~~inp~ 97 (223)
T PRK00145 24 ISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKN---DPQK---LQQEMMKLYKEKGVNPL 97 (223)
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc---cHHH---HHHHHHHHHHHhCCCch
Confidence 44458999999999999999999999999999999999999999999999986 6654 48999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhHHHHH
Q 013775 231 TPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMK 310 (436)
Q Consensus 231 ~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el~~~~~~~~~p~~~~mk 310 (436)
++|+|+++|+|||+++|+++|++++ +.++||+||+||+.+||+++||++++++++++.+++... .+...+.|+
T Consensus 98 ~~~lp~liQiPif~~l~~~i~~~~~----~~~~~flW~~dLt~~Dp~~iLPil~~~~~~l~~~~~~~~---~~~~~~~~k 170 (223)
T PRK00145 98 GGCLPLLIQWPILIALYYVFNNLTG----INGVSFLWIKDLAKPDITWILPILSGATTYLSGYLMTKA---DSSQAGQMK 170 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCccChhhccCcchHHHHHHHHHHHHHHHHHHcCCC---ChhHHHHHH
Confidence 9999999999999999999999865 778999999999999999999999999999998876543 223345678
Q ss_pred HHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcchhHHhh
Q 013775 311 NISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKM 357 (436)
Q Consensus 311 ~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk~ 357 (436)
.+++++|+++++++.++|+|+++||++||+|+++|+++++++..||.
T Consensus 171 ~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~ 217 (223)
T PRK00145 171 TMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKK 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 88899999999999999999999999999999999999998766653
No 3
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=4.7e-48 Score=378.02 Aligned_cols=204 Identities=27% Similarity=0.505 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHH----HHHHhhhhHHHHHHHHHHhhccCCHHHHHHHH
Q 013775 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKS----TSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQ 215 (436)
Q Consensus 140 v~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~----~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q 215 (436)
+.++.++++++|+.+|.|||++|+++|+++|++++|++++|+|+ ++||+++|||+++||+||++++ |++++++.+
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~-d~~~~~~~~ 120 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTK-DLEKQKEYQ 120 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccC-CHHHHHHHH
Confidence 67889999999999999999999999999999999999999999 9999999999999999998754 788777889
Q ss_pred HHHHHHHHHhCCCCcc-chhhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHH
Q 013775 216 KRMQNLFKEYGVHPLT-PLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVEC 294 (436)
Q Consensus 216 ~em~~LyKk~gvnP~~-~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el 294 (436)
+|++++||||||||++ +|+|+++|+|||+++|.++|++. ++.++||+|| ||+.+| +|||+++++++++++++
T Consensus 121 ~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~----~l~~~~flW~-dLs~~D--~ILPil~~~~~~~~~~~ 193 (256)
T PRK01622 121 KEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE----EIASHSFLWF-NLGHAD--HILPIIAGLTYFIQMKV 193 (256)
T ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh----hccCCCceee-CCcchh--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999864 5889999999 999999 89999999999999888
Q ss_pred hhccCCCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcch
Q 013775 295 NMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVP 352 (436)
Q Consensus 295 ~~~~~~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p 352 (436)
+...+.+ ....+.||.+++++|+++++++.++|+|+.+||++||+|+++|++++++.
T Consensus 194 ~~~~~~~-~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~ 250 (256)
T PRK01622 194 SQSNGTS-PEQVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250 (256)
T ss_pred cCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7633221 12234567777899999999999999999999999999999999999864
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=3.1e-48 Score=411.06 Aligned_cols=201 Identities=27% Similarity=0.585 Sum_probs=183.8
Q ss_pred CCcc--cHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHH
Q 013775 135 DSFL--PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVA 212 (436)
Q Consensus 135 ~~~~--Pv~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~ 212 (436)
.||+ .+.+++++|+++|.++| |||++||++|+++|++++|++++|+++++||+.++|+|++||+||++ |++++
T Consensus 299 ~G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~---d~~k~- 373 (521)
T PRK01318 299 YGWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKD---DPQKM- 373 (521)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHh---hHHHH-
Confidence 3554 58999999999999999 99999999999999999999999999999999999999999999986 66654
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcc-cccCCCCcchhhHH-----HHHHHH
Q 013775 213 DGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF-WFTDLSTPDSFYIL-----PILTGL 286 (436)
Q Consensus 213 ~~q~em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~l-Wf~DLt~pDp~~IL-----Pil~~l 286 (436)
++||++|||||||||+++|+|+|+|+||||++|.+++++.+ +++++|+ ||+||+++||++|| |+++++
T Consensus 374 --~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e----l~~~~fl~Wi~DLs~~Dp~~il~~~~lPil~~~ 447 (521)
T PRK01318 374 --QQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE----LRHAPFIGWIHDLSAPDPYFILHIGLLPILMGI 447 (521)
T ss_pred --HHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH----hccCchheeeccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 6778887 99999999999999 999999
Q ss_pred HHHHHHHHhhccCCCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcch
Q 013775 287 SFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVP 352 (436)
Q Consensus 287 ~~l~~~el~~~~~~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p 352 (436)
+++++++++.+. .+++ +++++++||+++++++.+||+||++||++||+++++|++++++.
T Consensus 448 ~~~~~~~l~~~~---~~~~---q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~ 507 (521)
T PRK01318 448 TMFLQQKLNPTP---TDPM---QAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRR 507 (521)
T ss_pred HHHHHHHhcCCC---CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999988653 2333 45567779999999999999999999999999999999999864
No 5
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=3.6e-47 Score=379.46 Aligned_cols=209 Identities=21% Similarity=0.386 Sum_probs=185.6
Q ss_pred cHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHH----HHHHhhhhHHHHHHHHHHhhccCCHHHHHHH
Q 013775 139 PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKS----TSKLTLMRPRLEEIKQDMQDKAMDPMAVADG 214 (436)
Q Consensus 139 Pv~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~----~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~ 214 (436)
-+.++.++++++|+.+|++||++||++|++||++++||+++|.++ ++||+.++||+++|++||+++. |+++.++.
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~-~~~~~~~~ 119 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNAT-TQEEKMAA 119 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCC-ChHHHHHH
Confidence 367899999999999999999999999999999999999988864 6999999999999999999754 66666678
Q ss_pred HHHHHHHHHHhCCCCcc--chhhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHH
Q 013775 215 QKRMQNLFKEYGVHPLT--PLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITV 292 (436)
Q Consensus 215 q~em~~LyKk~gvnP~~--~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~ 292 (436)
++|++++||||||||++ ||+|+|+|+|||+++|.+++. +|++.+++|+|| ||+.|| ++||++++++++++.
T Consensus 120 q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~----~~~l~~~~flwi-dL~~p~--~iLpii~~v~~~~q~ 192 (307)
T PRK02463 120 QTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQY----TKGVSTSTFLGI-DLGSPS--LVLTAIIGVLYFFQS 192 (307)
T ss_pred HHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhc----chhhccCCeeee-ecCchh--HHHHHHHHHHHHHHH
Confidence 99999999999999998 899999999999999999985 567999999999 998755 799999999999998
Q ss_pred HHhhccCCCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhc---chhHHhh
Q 013775 293 ECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLK---VPGVKKM 357 (436)
Q Consensus 293 el~~~~~~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr---~p~vRk~ 357 (436)
+++... .. +...+.||.+++++|+++++++.++|+||.+||++||+|+++|+++++ +|++|+.
T Consensus 193 ~~~~~~-~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk~~~~ 258 (307)
T PRK02463 193 WLSMMG-VP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPRLRKQ 258 (307)
T ss_pred HHhccC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 876542 22 223456888999999999999999999999999999999999999976 7777764
No 6
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=2.8e-47 Score=354.90 Aligned_cols=181 Identities=31% Similarity=0.637 Sum_probs=166.4
Q ss_pred hhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 013775 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (436)
Q Consensus 157 pW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP~~~~l~~ 236 (436)
|||++|+++|+++|++++|++++|.++++||++++||++++++||++ |+++ .++|++++||||||||+++|+|+
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~---~~~~---~~~e~~~l~k~~~~~p~~~~lp~ 74 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKD---DPQK---LQQEMMKLYKEEGVNPLGGCLPL 74 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hHHH---HHHHHHHHHHHhCCCcHHHHHHH
Confidence 69999999999999999999999999999999999999999999985 5544 58999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHh
Q 013775 237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGF 316 (436)
Q Consensus 237 LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el~~~~~~~~~p~~~~mk~~~rvm 316 (436)
++|+|||+++|.++|++. ++.++||+||+||+.+|||++||++++++++++++++...+ +..+.+|.+++++
T Consensus 75 liQ~Pif~~~~~~lr~~~----~l~~~~flW~~dL~~~Dp~~iLPii~~~~~~~~~~~~~~~~----~~~~~~k~m~~~~ 146 (181)
T TIGR03592 75 LIQMPIFIALYQVLRRSI----ELRHAPFLWIKDLSAPDPYYILPILMGATMFLQQKLSPSGP----PDPAQQKIMMYIM 146 (181)
T ss_pred HHHHHHHHHHHHHHHhhH----HhccCCCcCccccCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHH
Confidence 999999999999999874 48899999999999999999999999999999999876532 1234567778999
Q ss_pred HHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcc
Q 013775 317 AVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKV 351 (436)
Q Consensus 317 ~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~ 351 (436)
|+++++++.++|+|+.+||++||+|+++|++++++
T Consensus 147 p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 147 PLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999873
No 7
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-47 Score=358.94 Aligned_cols=189 Identities=41% Similarity=0.716 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 013775 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (436)
Q Consensus 157 pW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP~~~~l~~ 236 (436)
+||++|+++|+++|++++|++++|+|+++||++++||+++|++||++ |+++ .++|++++||||||||+++|+++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~---~~~~---~~~~~~~l~k~~~~~p~~~~~~~ 75 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKE---DQQK---MQQEMQKLYKKHGVNPLKGCLPP 75 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHH---HHHHHHHHHHHcCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999964 4444 58999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcc-----hhhHHHHHHHHHHHHHHHHhhc-cCCCCChhHHHHH
Q 013775 237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPD-----SFYILPILTGLSFLITVECNMQ-EGLEGNPAAVTMK 310 (436)
Q Consensus 237 LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pD-----p~~ILPil~~l~~l~~~el~~~-~~~~~~p~~~~mk 310 (436)
++|+|||+++|.++|+|++ +|++.++|++||+||+.+| ||++||++++++++++++++.. ....++.....+|
T Consensus 76 liq~Pif~~~~~~lr~~~~-~~~~~~~g~lw~~dL~~~D~~~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k 154 (198)
T PF02096_consen 76 LIQIPIFIGLFRALRRMAE-VPSLATGGFLWFPDLTAPDPTMGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMK 154 (198)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccccCceeChHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHH
Confidence 9999999999999999998 8999999999999999999 9999999999999999999764 1222344566788
Q ss_pred HHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcch
Q 013775 311 NISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVP 352 (436)
Q Consensus 311 ~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p 352 (436)
.+.+++|+++++++.++|+|+++||++||+|+++|++++|++
T Consensus 155 ~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~ 196 (198)
T PF02096_consen 155 IMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP 196 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888999999999999999999999999999999999999975
No 8
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.4e-46 Score=398.40 Aligned_cols=199 Identities=23% Similarity=0.421 Sum_probs=175.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 013775 142 ALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNL 221 (436)
Q Consensus 142 ~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~L 221 (436)
++.+++.++|..+| |||++||++||+||++++||+++|+++++||+.+||+|++||+||++ |++++ |+|||+|
T Consensus 561 ~L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKd---D~qK~---QqEmMkL 633 (795)
T PRK01001 561 LLFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKK---EPKRA---QMEIMAL 633 (795)
T ss_pred HHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHh---HHHHH---HHHHHHH
Confidence 34666788999999 99999999999999999999999999999999999999999999986 66654 9999999
Q ss_pred HHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcc--cccCCCCcchhh--------------HHHHHHH
Q 013775 222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF--WFTDLSTPDSFY--------------ILPILTG 285 (436)
Q Consensus 222 yKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~l--Wf~DLt~pDp~~--------------ILPil~~ 285 (436)
||||||||++||+|+|+|+||||++|.+|+++.+ ++..+|+ |++||+++||++ ||||+++
T Consensus 634 YKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie----LRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILmg 709 (795)
T PRK01001 634 YKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL----LRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILLG 709 (795)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH----hcCCchhhhhHhhccCCCccccccccccccccchhHHHHHHH
Confidence 9999999999999999999999999999999875 5667776 999999999865 9999999
Q ss_pred HHHHHHHHHhhccCC-CCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcc
Q 013775 286 LSFLITVECNMQEGL-EGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKV 351 (436)
Q Consensus 286 l~~l~~~el~~~~~~-~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~ 351 (436)
++|++++++++.... ..++.+++++.|+.+||+++++++.++|+||++||++||+++++|++++++
T Consensus 710 vtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k 776 (795)
T PRK01001 710 VVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNK 776 (795)
T ss_pred HHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999998764321 112233445566688999999999999999999999999999999999975
No 9
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-44 Score=362.06 Aligned_cols=209 Identities=30% Similarity=0.547 Sum_probs=188.2
Q ss_pred cccHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHH
Q 013775 137 FLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216 (436)
Q Consensus 137 ~~Pv~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~ 216 (436)
|.+...+..+++++|.+.|+|||++|+++|++||++++|++.++.++++||+.+||++++|++||++ .|++++ |+
T Consensus 89 ~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~--~~~~~~---q~ 163 (314)
T COG0706 89 WNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKG--TDKQKQ---QQ 163 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCC--CCHHHH---HH
Confidence 4455558899999999999999999999999999999999999999999999999999999999994 367665 88
Q ss_pred HHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcc-cccCCCCcchhhHH--HHHHHHHHHHHHH
Q 013775 217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF-WFTDLSTPDSFYIL--PILTGLSFLITVE 293 (436)
Q Consensus 217 em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~l-Wf~DLt~pDp~~IL--Pil~~l~~l~~~e 293 (436)
|+++|||||||||++||+|+++|+|||+++|.+++++.+ +...+|+ |++||+.+||++++ ||+++++++++.+
T Consensus 164 e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~----l~~~~f~~w~~dl~~~dp~~~~~~pii~gv~~f~q~~ 239 (314)
T COG0706 164 EMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE----LRGAPFLGWITDLSLPDPDYILLLPILAGVTMFLQQK 239 (314)
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc----ccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876 5556665 99999999999976 9999999999999
Q ss_pred HhhccCCCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcchhHHh
Q 013775 294 CNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKK 356 (436)
Q Consensus 294 l~~~~~~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk 356 (436)
++..... ++..+++++++++||+++++++.++|+||++||++||+|+++|+++++++..++
T Consensus 240 ls~~~~~--~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~ 300 (314)
T COG0706 240 LSPRNLS--TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK 300 (314)
T ss_pred hccccCC--cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 9876421 334456788889999999999999999999999999999999999999987765
No 10
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.2e-43 Score=355.32 Aligned_cols=208 Identities=17% Similarity=0.295 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHH------hhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHH
Q 013775 140 VAALQHFIDAMH------NFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVAD 213 (436)
Q Consensus 140 v~~lq~lLe~iH------~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~ 213 (436)
+.++.+++.++| ...|+|||++||++|+++|++++|++++|+++++||+++|||+++|++||++++.|+++.++
T Consensus 109 v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k 188 (357)
T PRK02201 109 VYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQR 188 (357)
T ss_pred HHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 567777777775 56799999999999999999999999999999999999999999999999986568888888
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcc---------hhhHHHHHH
Q 013775 214 GQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPD---------SFYILPILT 284 (436)
Q Consensus 214 ~q~em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pD---------p~~ILPil~ 284 (436)
.++|+++|||||||||+++|+|+|+|+|||+++|.++|.+.+ +....|+|+ ||+.+| +++++++++
T Consensus 189 ~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~----l~~~~flgi-dLs~~~~~~~~~~~~~~l~l~ii~ 263 (357)
T PRK02201 189 KQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS----IKVTTWLGI-DLSATSWQEIFAGNWIYLPILIIV 263 (357)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh----hccCCCccc-ccCCCChhhhccccchHHHHHHHH
Confidence 999999999999999999999999999999999999998865 677899999 999988 345555666
Q ss_pred HHHHHHHHHH----hhccCC------CCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcch
Q 013775 285 GLSFLITVEC----NMQEGL------EGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVP 352 (436)
Q Consensus 285 ~l~~l~~~el----~~~~~~------~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p 352 (436)
++++++++.+ +...+. +..+..+.|+.++++||+++++++.++|+||.+||++||+|+++|+++++.-
T Consensus 264 ~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 264 VPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555433 322111 1122345677889999999999999999999999999999999999999864
No 11
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=355.13 Aligned_cols=345 Identities=33% Similarity=0.547 Sum_probs=270.8
Q ss_pred CCCccccccccccCCCCCCcccccccccc-cccch----hhHHHHHhhcCcchHHHHHHhcCCcccHHHHHHHHHHHHhh
Q 013775 79 VPSVGSAFCRYMSTTVGEGADKIELISDV-ADVFT----ETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNF 153 (436)
Q Consensus 79 ~~~~~~~~~R~~St~~~~~~~~i~~~~~~-~~v~~----~~~~~~v~~~~p~~~e~~~~~~~~~~Pv~~lq~lLe~iH~~ 153 (436)
+...+...+|.+|+....+.+..+.+.-+ .+..+ +.....+........+.+...+++|.|++.+|++|+.+|.+
T Consensus 18 ~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~ 97 (372)
T KOG1239|consen 18 RLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRPVATLQNELERLHVY 97 (372)
T ss_pred HHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCchhHHHHHHHHHHHH
Confidence 33445556777777665555543222100 11111 11111111122233444667779999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCCccch
Q 013775 154 TGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPL 233 (436)
Q Consensus 154 tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP~~~~ 233 (436)
+|+|||++|+.+|+.+|.+++|+.+.++++.+|+..+.|+|.++.++++.++.|.......++++++++++||++| +.+
T Consensus 98 ~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l 176 (372)
T KOG1239|consen 98 SGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQL 176 (372)
T ss_pred hCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chh
Confidence 9999999999999999999999999999999999999999999999999877677777778889999999999999 999
Q ss_pred hhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Q 013775 234 KGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNIS 313 (436)
Q Consensus 234 l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el~~~~~~~~~p~~~~mk~~~ 313 (436)
..+++|+|+|+++|.+||.|+.+++++.++|++||+||+.+||+++||++++++++..+|++.+.+...+.+...|+.++
T Consensus 177 ~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (372)
T KOG1239|consen 177 ALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPDPLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFI 256 (372)
T ss_pred hhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccCcchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877777888899999
Q ss_pred HHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcchhHHhhhCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhhh
Q 013775 314 RGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPEIPVVQQTTDPKPSFSLFSAIKQASEAKAARQ 393 (436)
Q Consensus 314 rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk~lgiP~~~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~ 393 (436)
+.++++++++++++|+|+++||+ |+++|..++|. .||..+|+|+.+++++ ...--.++++.+++..+..+-.+
T Consensus 257 ~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 329 (372)
T KOG1239|consen 257 RILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVRKKLGIPDVPSIPP--KASLVSNLFLLWKNLYKESQDHE 329 (372)
T ss_pred HHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHHHhcCCCCCCCCcc--hhhhhHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999 99999999999 9999999999986622 22222256667777666643112
Q ss_pred hcccccccCCCC-ccccccchHHHhHHHHHHHHhhhcccccc
Q 013775 394 ASASVTAEQPKS-TEQKISSSAVLSQRIRSLEKQVKGRKKNK 434 (436)
Q Consensus 394 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (436)
+... +..+. ..+-..-+++...+...+|.+.|.|++++
T Consensus 330 ~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~ 368 (372)
T KOG1239|consen 330 RGQD---EEAAGVLRRTVATSSTYKPLLEQLEDRLKLRSKKV 368 (372)
T ss_pred cchh---hhcccccccccccCccccchhhcchhhhhcccccc
Confidence 2221 11111 11112233788888899998877766543
No 12
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.2e-42 Score=349.14 Aligned_cols=192 Identities=25% Similarity=0.451 Sum_probs=159.2
Q ss_pred hcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCCccc
Q 013775 153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP 232 (436)
Q Consensus 153 ~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP~~~ 232 (436)
.+|+|||++|+++|+++|++++||+++|+++++||++++||+++|++||++ |+++ +++|+++|||||||||+++
T Consensus 37 ~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~---~~~~---~~~e~~~Lykk~ginp~~g 110 (329)
T PRK01315 37 DSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKG---DRER---MSQEMMKLYKETGTNPLSS 110 (329)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHh---HHHH---HHHHHHHHHHHcCCCchHH
Confidence 568999999999999999999999999999999999999999999999986 5544 5899999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhcc-----------CCccccCCcccccCCCC----------cch---hhHHHHHHHHHH
Q 013775 233 LKGLFIQGPVFISFFLAISNMAEK-----------VPSFKNGGAFWFTDLST----------PDS---FYILPILTGLSF 288 (436)
Q Consensus 233 ~l~~LiQiPIfi~lf~aIr~ma~~-----------vpsl~~~G~lWf~DLt~----------pDp---~~ILPil~~l~~ 288 (436)
|+|+|+|+|||+++|.+||++++. ++++...+++|+ +|+. .|. ++|||+++++++
T Consensus 111 clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~f~~~~~~~~~~~~ii~~iL~il~~~~~ 189 (329)
T PRK01315 111 CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAATFLQALNAGNTAVQVVAAVLIILMSASQ 189 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-cccccccccccccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999987642 234555566654 3322 222 468999999998
Q ss_pred HHHHHHhhcc----CCCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcc
Q 013775 289 LITVECNMQE----GLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKV 351 (436)
Q Consensus 289 l~~~el~~~~----~~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~ 351 (436)
+++....+.. ....+++.+.||.|+++||+++++++.+||+||.+||++||+|+++|++++.+
T Consensus 190 ~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW~~snl~si~Qq~~v~r 256 (329)
T PRK01315 190 FITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIR 256 (329)
T ss_pred HHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8875422221 11235666778888999999999999999999999999999999999988653
No 13
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3e-42 Score=343.29 Aligned_cols=209 Identities=20% Similarity=0.365 Sum_probs=170.8
Q ss_pred CcccHHHHHHHHHHHHh-----hcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHH
Q 013775 136 SFLPVAALQHFIDAMHN-----FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMA 210 (436)
Q Consensus 136 ~~~Pv~~lq~lLe~iH~-----~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~ 210 (436)
.|.|++.+.+++++++. .+|+|||++|+++|+++|++++|++++|+++++||+++|||+++|++||++ |+++
T Consensus 5 ~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~---~~~~ 81 (304)
T PRK03449 5 IYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGN---DRQK 81 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhh---hHHH
Confidence 46788888777777653 579999999999999999999999999999999999999999999999985 5544
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCcccc---------------------CCcc---
Q 013775 211 VADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKN---------------------GGAF--- 266 (436)
Q Consensus 211 ~~~~q~em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~---------------------~G~l--- 266 (436)
.++|+++|||||||||+++|+|+|+|+|||+++|.+||+|+...++..+ ++|+
T Consensus 82 ---~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~ 158 (304)
T PRK03449 82 ---MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR 158 (304)
T ss_pred ---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh
Confidence 5899999999999999999999999999999999999999653222110 1343
Q ss_pred --------ccc----------CCCCcchh---hHHHHHHHHHHHHHHHHhhccCC---CCChhHHH-HHHHHHHhHHHHH
Q 013775 267 --------WFT----------DLSTPDSF---YILPILTGLSFLITVECNMQEGL---EGNPAAVT-MKNISRGFAVLSI 321 (436)
Q Consensus 267 --------Wf~----------DLt~pDp~---~ILPil~~l~~l~~~el~~~~~~---~~~p~~~~-mk~~~rvm~v~~v 321 (436)
|+. |++..|.. ++|||+++++++++.++++.... ..++.+.. +|.|+++||++++
T Consensus 159 ~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~~~mP~m~~ 238 (304)
T PRK03449 159 LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLALWVFPLGVL 238 (304)
T ss_pred hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHHHHhHHHHH
Confidence 333 56656643 46889999999999887654321 12333333 4667799999999
Q ss_pred hHhcchhhHHHHHHHHhHHHHHHHHHHhc
Q 013775 322 PLTMTFPKAIFCYWITSNFFSLVYGLVLK 350 (436)
Q Consensus 322 p~~~~~PagL~lYWitSnlfsl~Q~~lLr 350 (436)
+++.++|+||.+||++||+|+++|+++++
T Consensus 239 ~~~~~~Pagl~LYW~~snl~~i~Qq~~i~ 267 (304)
T PRK03449 239 VGGPFLPLAILLYWVSNNIWTFGQQHYVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985
No 14
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=4.1e-39 Score=332.04 Aligned_cols=220 Identities=19% Similarity=0.393 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHhh----c----CChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHH
Q 013775 140 VAALQHFIDAMHNF----T----GFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAV 211 (436)
Q Consensus 140 v~~lq~lLe~iH~~----t----GLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~ 211 (436)
+.++.++|.++|.. . |++||++|+++||+||++++||+++|+++++||+.++|++++|+++|+++. |++.+
T Consensus 6 ~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~-d~e~~ 84 (429)
T PRK00247 6 IYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKT-DEASI 84 (429)
T ss_pred HHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCC-CHHHH
Confidence 45566777766643 2 578999999999999999999999999999999999999999999999864 77777
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCcccc-----------------------------
Q 013775 212 ADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKN----------------------------- 262 (436)
Q Consensus 212 ~~~q~em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~----------------------------- 262 (436)
+++++|+++|||+|||||+.+|+|+|+|+|||+++|.+||+|+.+.+++.+
T Consensus 85 ~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvpL~~ 164 (429)
T PRK00247 85 RELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVPLPA 164 (429)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCCccc
Confidence 888999999999999999999999999999999999999999875555432
Q ss_pred ------CCcccccCCCCcch-hhHHHHHH--HHHHHHHHHHhhccC----CCCCh----hHHHHHHHHHHhHHHHHhHhc
Q 013775 263 ------GGAFWFTDLSTPDS-FYILPILT--GLSFLITVECNMQEG----LEGNP----AAVTMKNISRGFAVLSIPLTM 325 (436)
Q Consensus 263 ------~G~lWf~DLt~pDp-~~ILPil~--~l~~l~~~el~~~~~----~~~~p----~~~~mk~~~rvm~v~~vp~~~ 325 (436)
++++|+ +.+.+|. +++||+++ +++++++..+++... ...++ +++.|..+++++|+|++.+++
T Consensus 165 ~~sm~~e~~~~~-~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~~g~ 243 (429)
T PRK00247 165 YVSMPAEQLAYL-GTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGL 243 (429)
T ss_pred ccccchhhhhhc-cCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 122233 2344453 47888554 444456665554321 12233 333455556778877766444
Q ss_pred --chhhHHHHHHHHhHHHHHHHHHHhcchhHHhhhCCCC
Q 013775 326 --TFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPE 362 (436)
Q Consensus 326 --~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk~lgiP~ 362 (436)
.||+||.+||++||+|+++|++++.. .+++.+-+++
T Consensus 244 ~~~~PaallLYWv~snlwtl~Qq~i~~~-~l~~~~P~~~ 281 (429)
T PRK00247 244 TGPFPTAIALYWVANNLWTLIQNIIMYL-ILERKYPLTD 281 (429)
T ss_pred hccchHHHHHHHHHhhHHHHHHHHHHHH-HHHHhcCCCc
Confidence 48999999999999999999997763 3566555544
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.5e-33 Score=275.47 Aligned_cols=203 Identities=23% Similarity=0.450 Sum_probs=164.3
Q ss_pred ccHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHH----HHHHHHhhccCCHHHHHH
Q 013775 138 LPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE----EIKQDMQDKAMDPMAVAD 213 (436)
Q Consensus 138 ~Pv~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~----~i~~k~~~~~~D~~~~~~ 213 (436)
+-..++.++++++|.++| +||++|+++|++||++++||+++|+|+++||+.+||+|+ +|++||++ |++++
T Consensus 8 i~~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKd---Dpqk~-- 81 (375)
T PRK02654 8 ISNNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKN---DPQKQ-- 81 (375)
T ss_pred HHHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcC---CHHHH--
Confidence 334678889999999999 999999999999999999999999999999999999985 79999975 77654
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhh--c-------------------c----------------
Q 013775 214 GQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMA--E-------------------K---------------- 256 (436)
Q Consensus 214 ~q~em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma--~-------------------~---------------- 256 (436)
++||++|||||| ||++||+|+|+|+|||+++|.+||... . +
T Consensus 82 -QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~~~~ 159 (375)
T PRK02654 82 -QEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFITDGV 159 (375)
T ss_pred -HHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEecCc
Confidence 999999999999 999999999999999999999999841 0 0
Q ss_pred ------------------------------------------------------------------------------CC
Q 013775 257 ------------------------------------------------------------------------------VP 258 (436)
Q Consensus 257 ------------------------------------------------------------------------------vp 258 (436)
+|
T Consensus 160 h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~~ip 239 (375)
T PRK02654 160 HFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQGTIP 239 (375)
T ss_pred cceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEEeec
Confidence 02
Q ss_pred ccc-cCCcccccCCCC-----cch-----hhHHHHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHhHHH--HHhHhc
Q 013775 259 SFK-NGGAFWFTDLST-----PDS-----FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVL--SIPLTM 325 (436)
Q Consensus 259 sl~-~~G~lWf~DLt~-----pDp-----~~ILPil~~l~~l~~~el~~~~~~~~~p~~~~mk~~~rvm~v~--~vp~~~ 325 (436)
+++ ..|||++.-|.. .|. ..++-+..|++.+++..++.+ ++.++|.+.++.+ +.|++ .+++++
T Consensus 240 g~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~-~~~~~~qq~t~nk---itpv~~sgmflff 315 (375)
T PRK02654 240 GLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQ-GMPANPQQSTANK---ITPVMFSGMFLFF 315 (375)
T ss_pred ceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcC-CCCCChhHHHHHh---hhhHHHhhhHhcc
Confidence 222 357777777764 233 235556678889999888765 4456777666654 45555 356778
Q ss_pred chhhHHHHHHHHhHHHHHHHHHHhcch
Q 013775 326 TFPKAIFCYWITSNFFSLVYGLVLKVP 352 (436)
Q Consensus 326 ~~PagL~lYWitSnlfsl~Q~~lLr~p 352 (436)
.+|||+.+||+.+|+|..+|+++|.+.
T Consensus 316 plpagvllym~ianifq~~qt~~l~re 342 (375)
T PRK02654 316 PLPAGVLLYMVIANIFQTLQTFLLSRE 342 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999753
No 16
>COG1422 Predicted membrane protein [Function unknown]
Probab=97.85 E-value=0.00031 Score=66.40 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHH---HhCCCCc
Q 013775 156 FNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDK--AMDPMAVADGQKRMQNLFK---EYGVHPL 230 (436)
Q Consensus 156 LpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~--~~D~~~~~~~q~em~~LyK---k~gvnP~ 230 (436)
.|--++|+++++++-+. +-+.-+-....+||+++|-+++|+|++++++ .+|.+++++.|++.+++.. |-=-..|
T Consensus 44 ~~p~lvilV~avi~gl~-~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 44 LPPHLVILVAAVITGLY-ITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred cccHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777777766554 3333444567799999999999999999874 3477766665555444332 2111123
Q ss_pred cchh-hhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhHHHH
Q 013775 231 TPLK-GLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTM 309 (436)
Q Consensus 231 ~~~l-~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el~~~~~~~~~p~~~~m 309 (436)
++++ -.++.||+|..+++-+...... ...|+..+|.+.-.. |-
T Consensus 123 kPM~~~~v~tI~~F~Wl~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~------------------- 166 (201)
T COG1422 123 KPMLYISVLTIPFFAWLRWFVGTGGYL----------------VSEPNMALPTLFHIL-YH------------------- 166 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCccc----------------ccCccchhHHhhhhh-hh-------------------
Confidence 3332 2356777777777777654331 112556666554221 10
Q ss_pred HHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcchhHHhhhCCC
Q 013775 310 KNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVP 361 (436)
Q Consensus 310 k~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk~lgiP 361 (436)
.+....+|.-+.+|.+||-.++-+ +||.+++-
T Consensus 167 -----------~~~~~~~~gWi~WYfLcS~~vs~i---------lrk~l~i~ 198 (201)
T COG1422 167 -----------TAVFGDFLGWIGWYFLCSFVVSQI---------LRKVLNIA 198 (201)
T ss_pred -----------ccccccchHHHHHHHHHHHHHHHH---------HHHHHhcc
Confidence 011346777789999999988877 67777664
No 17
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=91.76 E-value=0.95 Score=41.61 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHHhhcchhhhH-----HHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCC
Q 013775 155 GFNWWASIIVTTLLIRTATVPLLI-----NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHP 229 (436)
Q Consensus 155 GLpW~~aIil~Ti~vRl~llPL~i-----~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP 229 (436)
-+|..++|++++++.-++.-=+.. +.-+...++++++-+.++++++-+. ...++.++.++++++..++---..
T Consensus 12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01956_consen 12 LLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDF--KKPKKLEKRQMELMEKQQEMMMMM 89 (168)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468877777777766655321111 1122333444444444444442221 134455445555554444331122
Q ss_pred ccc-hhhhhhhhHHHHHHHHHHhhhh
Q 013775 230 LTP-LKGLFIQGPVFISFFLAISNMA 254 (436)
Q Consensus 230 ~~~-~l~~LiQiPIfi~lf~aIr~ma 254 (436)
+++ +.-+++++|+|..+++.+....
T Consensus 90 mK~~~~~~v~~i~i~~wi~~~f~g~v 115 (168)
T PF01956_consen 90 MKPMFVTMVPQIPIFYWINYFFSGFV 115 (168)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcc
Confidence 333 2235678888887777776543
No 18
>COG1422 Predicted membrane protein [Function unknown]
Probab=79.80 E-value=8.8 Score=36.81 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=13.7
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 013775 182 KSTSKLTLMRPRLEEIKQD 200 (436)
Q Consensus 182 r~~aKm~~l~Pel~~i~~k 200 (436)
+-+..|++.|.|.+|.+++
T Consensus 76 ~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 76 ELQKMMKEFQKEFREAQES 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888774
No 19
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.63 E-value=8.7 Score=40.22 Aligned_cols=193 Identities=17% Similarity=0.137 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCCccchhhhh
Q 013775 158 WWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLF 237 (436)
Q Consensus 158 W~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP~~~~l~~L 237 (436)
.+.++...|+++.+...|+..-+.....=+...+|-...+...+.. .-+-. ..|.++..+|+-.|++++++|....
T Consensus 35 ~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~--~~p~~--~lq~~l~~~h~~~g~pww~~i~~~t 110 (372)
T KOG1239|consen 35 SGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSS--WRPVA--TLQNELERLHVYSGLPWWASIVATT 110 (372)
T ss_pred ccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcc--cCchh--HHHHHHHHHHHHhCCcchHHHHHhH
Confidence 5567777779999999999977777777777788877776555543 12322 3588999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhh-----cc---CCcc----------ccCCcccc-------cCCCCc-ch--hhHHHHHHHHHHH
Q 013775 238 IQGPVFISFFLAISNMA-----EK---VPSF----------KNGGAFWF-------TDLSTP-DS--FYILPILTGLSFL 289 (436)
Q Consensus 238 iQiPIfi~lf~aIr~ma-----~~---vpsl----------~~~G~lWf-------~DLt~p-Dp--~~ILPil~~l~~l 289 (436)
+-++.++..+.+..+-. .. .|.+ .+.++.|- .-.... |+ +.++++.+.++++
T Consensus 111 ~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sff 190 (372)
T KOG1239|consen 111 VLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISFF 190 (372)
T ss_pred hhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCcchhhhhhhcchhHHHHH
Confidence 99999999998886311 01 1111 01223331 111222 32 3344444555555
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhc---chhHHhhhCC
Q 013775 290 ITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLK---VPGVKKMLGV 360 (436)
Q Consensus 290 ~~~el~~~~~~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr---~p~vRk~lgi 360 (436)
+.++.-. ....+.+ ......++-+..+.-...+.++..||+++++-.-.|+.... .+..+..+.+
T Consensus 191 ~air~ma-~~v~~f~-----t~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (372)
T KOG1239|consen 191 MAIRVMA-VPVPSFT-----TGGLLWFPDLTGPDPLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRI 258 (372)
T ss_pred HHHHHhh-ccccccc-----hhhHHhcccccccCcchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHH
Confidence 5544222 1111111 11334555556666678888999999999999888876666 2344555544
No 20
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=70.14 E-value=27 Score=31.95 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=35.9
Q ss_pred HhhhhHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhh
Q 013775 187 LTLMRPRLEEIKQDMQDK--AMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNM 253 (436)
Q Consensus 187 m~~l~Pel~~i~~k~~~~--~~D~~~~~~~q~em~~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~m 253 (436)
|...+-+.+++++++++. ..|....++.+++.+++.++..=-....+.++++.+-+++.+|..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~ 110 (168)
T PF01956_consen 42 MDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYF 110 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455555556666665542 3444455555555555555443222333556666666666666666543
No 21
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=57.94 E-value=36 Score=38.03 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++.+
T Consensus 480 kqEvK~E~Ke~EGdP~iK~r~R~~~re~~~ 509 (609)
T PRK12772 480 KQEVKEEYKQDEGDPQIKAKIKQKQREMAM 509 (609)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 478899999988899855555555555544
No 22
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.41 E-value=62 Score=33.91 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 013775 174 VPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNL 221 (436)
Q Consensus 174 lPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~L 221 (436)
++...+++...-||. -+|+|++|++..+||+=..+.++.++++
T Consensus 209 ~~~qr~~~~k~lkMt-----KqEVKdE~K~sEGdPeVKsr~Rq~~re~ 251 (363)
T COG1377 209 YFYQRFQYIKKLKMT-----KQEVKDEYKQSEGDPEVKSRIRQMQREI 251 (363)
T ss_pred HHHHHHHHHHHccCc-----HHHHHHHHhhccCChhhhHHHHHHHHHH
Confidence 444455555444553 3678899998888997544444444433
No 23
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=55.35 E-value=49 Score=34.43 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++.+
T Consensus 217 kqEvKdE~Ke~EGdP~iK~rrR~~~re~~~ 246 (349)
T PRK12721 217 KDDVKQEYKDSEGDPEIKQKRRELQSEIQS 246 (349)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 478889999988899855454555554443
No 24
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=54.88 E-value=49 Score=34.26 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 013775 175 PLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (436)
Q Consensus 175 PL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk 224 (436)
++..+.+...-||. -+|+|++||+..+||+-..+.++.++++.++
T Consensus 202 ~~qr~~~~k~lkMs-----kqEvKdE~Ke~EGdP~iK~r~R~~~re~~~~ 246 (342)
T TIGR01404 202 AFQRYLFMKDLKMS-----KDEVKREYKEQEGDPEIKSKRRELHQEILSE 246 (342)
T ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 44444444444443 3688899999888998554555555555443
No 25
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=54.01 E-value=54 Score=34.23 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=19.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLF 222 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~Ly 222 (436)
-+|+|++||+..+||+-..+.++.++++.
T Consensus 226 kqEVKdE~Ke~EGdP~iK~r~Rq~~re~~ 254 (358)
T PRK13109 226 KQEIKDEHKQAEGDPSVKARLRSLAQDRA 254 (358)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 47888999988889985444444444443
No 26
>PRK09108 type III secretion system protein HrcU; Validated
Probab=53.88 E-value=53 Score=34.19 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 013775 175 PLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLF 222 (436)
Q Consensus 175 PL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~Ly 222 (436)
+...+++...-||. -+|+|++||+..+||+-..+.++.++++.
T Consensus 205 ~~qr~~~~k~lkMS-----kqEvK~E~K~~EGdP~iK~rrRq~~re~a 247 (353)
T PRK09108 205 KIQRWLFIRDNRMS-----KDEVKREHKESEGDPHIKGERKRLARELA 247 (353)
T ss_pred HHHHHHHHHHCCCC-----HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34444444444443 37888999988889975444444444444
No 27
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=52.18 E-value=59 Score=33.81 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++-+
T Consensus 217 kqEVKdE~K~~EGdP~iK~rrR~~~re~a~ 246 (347)
T TIGR00328 217 KQEVKDELKQSEGDPEVKGRIRQMQREAAR 246 (347)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 478889999988899855444444444443
No 28
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=50.85 E-value=63 Score=33.76 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLF 222 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~Ly 222 (436)
-+|+|++||+..+||+-..+.++.++++-
T Consensus 224 kqEVKdE~Ke~EGdP~iK~rrR~~~re~a 252 (359)
T PRK05702 224 KQEVKDEHKQSEGDPEVKGRIRQLQREMA 252 (359)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 47888999998889985444444444444
No 29
>PRK08156 type III secretion system protein SpaS; Validated
Probab=49.32 E-value=69 Score=33.51 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=20.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++.+
T Consensus 212 kqEvKdE~Ke~EGdP~iK~r~R~~~re~a~ 241 (361)
T PRK08156 212 KQEVKREYKEQEGNPEIKSKRREAHQEILS 241 (361)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 478889999888899855444444444443
No 30
>PRK06298 type III secretion system protein; Validated
Probab=48.75 E-value=72 Score=33.30 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=20.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++.+
T Consensus 218 kqEvKdE~K~~EGdP~iK~rrR~~~re~~~ 247 (356)
T PRK06298 218 KFEVKQEFKDTEGNPEIKGRRRQIAQEIAY 247 (356)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 478889999888899855454554544443
No 31
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=48.24 E-value=27 Score=32.78 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=24.7
Q ss_pred HHHHHHHHHH-hCCCCccchhhh----------hhhhHHHHHHHHHHhhh
Q 013775 215 QKRMQNLFKE-YGVHPLTPLKGL----------FIQGPVFISFFLAISNM 253 (436)
Q Consensus 215 q~em~~LyKk-~gvnP~~~~l~~----------LiQiPIfi~lf~aIr~m 253 (436)
.+++.+|||| +|++|=+|++|. -++.-+|+.+|..+++-
T Consensus 37 ~~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~~ 86 (175)
T PF05280_consen 37 RERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRKN 86 (175)
T ss_dssp HHHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHhc
Confidence 5677899999 899988887762 36788888888888753
No 32
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.50 E-value=94 Score=32.83 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=20.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++.+
T Consensus 224 kqEvKdE~K~~EGdP~iK~r~Rq~~re~a~ 253 (386)
T PRK12468 224 KQDIRDEFKNQEGDPHVKGRIRQQQRAMAR 253 (386)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 478889999888899855444444444443
No 33
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=41.78 E-value=97 Score=26.81 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHh-hcchhhhHHH------HHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 013775 159 WASIIVTTLLIR-TATVPLLINQ------LKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQ 219 (436)
Q Consensus 159 ~~aIil~Ti~vR-l~llPL~i~q------~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~ 219 (436)
|+.+.++++++= ++++|+.-.. .+...-...++-++.|+.+...+-..|+++.++.++|++
T Consensus 3 Wl~~a~l~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~ 70 (117)
T TIGR03142 3 WIVAALLTLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLAEGLLDEAEAEAARAELQ 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444444433 3456775321 112233456778888887777654456665555555553
No 34
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=39.96 E-value=1.7e+02 Score=27.54 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCCC
Q 013775 174 VPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHP 229 (436)
Q Consensus 174 lPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyKk~gvnP 229 (436)
+-+.++..+..-|-+...-+-+++.+++.++-.|..++.+..++-+-++|++.|--
T Consensus 62 l~fAYkNvk~~lKhKIa~kR~~aVt~ev~~k~~~dKK~~~kekderil~kkneVad 117 (170)
T PF07074_consen 62 LAFAYKNVKFVLKHKIAVKREEAVTREVNKKLADDKKMSKKEKDERILWKKNEVAD 117 (170)
T ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhccccccchHHHHHHHHHHhhhhhh
Confidence 44444444444443333333344444443322122223333444457778775543
No 35
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.43 E-value=4.4e+02 Score=27.06 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCCCccchh-hhhhhhHHHHHHHHHHhhhhccCCccccCCccc
Q 013775 226 GVHPLTPLK-GLFIQGPVFISFFLAISNMAEKVPSFKNGGAFW 267 (436)
Q Consensus 226 gvnP~~~~l-~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lW 267 (436)
..+|+..-+ ..+.++.++..+|..++.++.+ .|+...+|.|
T Consensus 76 ~~~~~~~~l~~~l~~~a~~~~~~~~~~~l~rp-~Gl~~~HF~w 117 (340)
T PF12794_consen 76 WSSPFSVALGAALLAMALFWLVFEFFRRLLRP-NGLAERHFGW 117 (340)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCeEeccCCC
Confidence 345654433 3467888888899999999873 4677778888
No 36
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=37.67 E-value=1.6e+02 Score=25.84 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=25.5
Q ss_pred hcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 013775 153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDM 201 (436)
Q Consensus 153 ~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~ 201 (436)
..|+||+.++++..+.- ++..|+.+.-.+...+.-.-.|.++++-+++
T Consensus 11 ~~Gl~p~~~~~~~~lGN-~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~ 58 (121)
T PF06695_consen 11 ALGLPPWEAFLLAFLGN-ILPVPFILLFLDKILKWLKRKPWLKKFYEWL 58 (121)
T ss_pred HcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46899987777665443 5556666655544333322234444333333
No 37
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=32.61 E-value=1.7e+02 Score=28.77 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=42.9
Q ss_pred hcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHH---HHHhhccCCHHHH----HHHHHHHHHHHHHh
Q 013775 153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIK---QDMQDKAMDPMAV----ADGQKRMQNLFKEY 225 (436)
Q Consensus 153 ~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~---~k~~~~~~D~~~~----~~~q~em~~LyKk~ 225 (436)
+.+-.||..+++-.+++=.+++=...++.+ + -.++.+|+. --++++ |..+. .+.++|+++..|..
T Consensus 20 ~~p~y~~~~filYfiv~~~i~~~~~~Rs~r-----r-~~~~~~Ei~~g~~L~eEk--~~~kl~~kD~el~~E~~~~~k~~ 91 (233)
T PF09973_consen 20 FFPQYYFEVFILYFIVFFGIMIVMGIRSYR-----R-GRKPRSEISKGRPLFEEK--NANKLMEKDKELQKEYKKQMKAS 91 (233)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhhhcc-----C-CcccHHHHhcCCcccccc--cHHHHHHhCHHHHHHHHHHHHHH
Confidence 334357777777777766666666666655 1 112333331 011111 11111 13455666665554
Q ss_pred CCCCccchhhhhhhhHHHHHHHHHHhh
Q 013775 226 GVHPLTPLKGLFIQGPVFISFFLAISN 252 (436)
Q Consensus 226 gvnP~~~~l~~LiQiPIfi~lf~aIr~ 252 (436)
+.+ ++-+||++.++..+.+
T Consensus 92 -------~~~-ll~~~i~ii~~~~~~~ 110 (233)
T PF09973_consen 92 -------MMN-LLILPIYIILFFLLYP 110 (233)
T ss_pred -------HHH-HHHHHHHHHHHHHHHH
Confidence 333 4447888887777754
No 38
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.57 E-value=1.5e+02 Score=26.79 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHhhc
Q 013775 158 WWASIIVTTLLIRTA 172 (436)
Q Consensus 158 W~~aIil~Ti~vRl~ 172 (436)
..+.|++..+++|+.
T Consensus 15 LvvGi~IG~li~Rlt 29 (138)
T COG3105 15 LVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHc
Confidence 444555566666654
No 39
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=32.09 E-value=1.7e+02 Score=32.82 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=21.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~LyK 223 (436)
-+|+|++||+..+||+-..+.++.++++.+
T Consensus 515 KQEVKdE~KEsEGDPeIKaRRRqlqREmar 544 (646)
T PRK12773 515 PSEAKREAKESDGDRSLQARRRQLARDMMN 544 (646)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 478889999988899865555555555553
No 40
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=31.04 E-value=26 Score=36.07 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=37.4
Q ss_pred ccccccccccchhhHHHHHhh---cCcchHHHHHHhcC--------Cc--ccHHHHHHHHHHHHhhcC
Q 013775 101 IELISDVADVFTETTVQAIAN---QAPAVNEVAIAAAD--------SF--LPVAALQHFIDAMHNFTG 155 (436)
Q Consensus 101 i~~~~~~~~v~~~~~~~~v~~---~~p~~~e~~~~~~~--------~~--~Pv~~lq~lLe~iH~~tG 155 (436)
+++..+...+.++...+ +.. .||...++..+.++ || +-+.++.|+|+++|.++|
T Consensus 300 ~~~~~~~~~v~pg~~~~-~~~~ly~GPK~~~~L~~~~~~Le~~VDyGw~~~iakPlf~lL~~~~~~vg 366 (366)
T TIGR03593 300 AGFVSPVVTVAPGQSAT-IKSRLYAGPKEQDVLKAIAPGLDLAVDYGWLWFIAKPLFWLLDFFHSLVG 366 (366)
T ss_pred EEEecCceEECCCCEEE-EEEEEEecHHHHHHHHHHhcCcccEEeeecHHHHHHHHHHHHHHHHHhcC
Confidence 45556666667776542 222 58888888776653 33 457899999999999876
No 41
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=29.83 E-value=6.4e+02 Score=27.60 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHH
Q 013775 160 ASIIVTTLLIRTATVPLLINQLKSTSKL 187 (436)
Q Consensus 160 ~aIil~Ti~vRl~llPL~i~q~r~~aKm 187 (436)
+.+++++.++|+++.+..+.++-+.|+-
T Consensus 316 l~~vi~~~~lrl~~~r~hLQaYLnlA~~ 343 (486)
T PF10268_consen 316 LWLVILLCLLRLALMRPHLQAYLNLAQD 343 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888776654
No 42
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.85 E-value=2.4e+02 Score=29.82 Aligned_cols=90 Identities=7% Similarity=0.099 Sum_probs=47.2
Q ss_pred HHHHHHHHHHH---hhcCChh----HHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHH--HHHHhhccCCHHHH
Q 013775 141 AALQHFIDAMH---NFTGFNW----WASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEI--KQDMQDKAMDPMAV 211 (436)
Q Consensus 141 ~~lq~lLe~iH---~~tGLpW----~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i--~~k~~~~~~D~~~~ 211 (436)
.+++|.|..+- .+.| -| ..++|+..++...+-+|+-+..+.--+--+..+|--.++ .++|.+++ |.+ -
T Consensus 254 ~ilmWtLqli~lvl~Yfs-vq~p~~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQa-eve-T 330 (452)
T KOG3817|consen 254 TILMWTLQLIGLVLAYFS-VQHPSAAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQA-EVE-T 330 (452)
T ss_pred hHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHH-HHH-H
Confidence 46677666543 3445 23 334455555555667899776553211111122222222 35565432 222 1
Q ss_pred HHHHHHHHHHHHHhCCCCccch
Q 013775 212 ADGQKRMQNLFKEYGVHPLTPL 233 (436)
Q Consensus 212 ~~~q~em~~LyKk~gvnP~~~~ 233 (436)
.+.-+|+++..++.+|++|+-.
T Consensus 331 ~kaLaeLReycnkpd~~~Wkvv 352 (452)
T KOG3817|consen 331 SKALAELREYCNKPDCKQWKVV 352 (452)
T ss_pred HHHHHHHHHHhCCCCCchhhhh
Confidence 2345677888899999998654
No 43
>KOG2966 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.48 E-value=2.4e+02 Score=29.06 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=9.6
Q ss_pred Ccchhhhhhhh
Q 013775 1 MAYRRSLTTRA 11 (436)
Q Consensus 1 ma~~r~l~~r~ 11 (436)
||.+|+|.+|-
T Consensus 1 ma~~~~l~~~l 11 (325)
T KOG2966|consen 1 MAMRKLLVKRL 11 (325)
T ss_pred CcchhhhHHHH
Confidence 89999999884
No 44
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=25.45 E-value=97 Score=32.07 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHH
Q 013775 174 VPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216 (436)
Q Consensus 174 lPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~ 216 (436)
++...+.+...-||. -+|+|+++|+..+||+-..+.++
T Consensus 204 ~~~qr~~~~k~lkMs-----kqEvK~E~Ke~EGdP~iK~rrR~ 241 (343)
T PF01312_consen 204 FAYQRFEFEKKLKMS-----KQEVKDEHKESEGDPEIKSRRRQ 241 (343)
T ss_dssp -------------HH-----HHHH--HHHCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHHHHHHHHH
Confidence 444445554444553 47889999998889974433333
No 45
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.18 E-value=1.6e+02 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.470 Sum_probs=22.8
Q ss_pred HhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH--HhCCCCc
Q 013775 187 LTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFK--EYGVHPL 230 (436)
Q Consensus 187 m~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~LyK--k~gvnP~ 230 (436)
+..++-|.++|++...+ +.+--+.++.||. ..|+|||
T Consensus 16 i~tvk~en~~i~~~ve~-------i~envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 16 INTVKKENEEISESVEK-------IEENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHccCCCC
Confidence 44556666666655432 3333466778885 5799998
No 46
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.78 E-value=5.4e+02 Score=23.62 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=4.7
Q ss_pred hcCChhHH
Q 013775 153 FTGFNWWA 160 (436)
Q Consensus 153 ~tGLpW~~ 160 (436)
..|++||.
T Consensus 13 ~~~~~~~t 20 (173)
T PRK13453 13 AGGVEWGT 20 (173)
T ss_pred hcCCCHHH
Confidence 35677753
No 47
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=24.53 E-value=1.4e+02 Score=29.39 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 013775 206 MDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (436)
Q Consensus 206 ~D~~~~~~~q~em~~LyKk~gvnP~~~~l~~ 236 (436)
.|..++ -..+++.|+++|+.|++|..|.
T Consensus 26 ~~R~~l---v~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 26 LDREEL---VELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred CCHHHH---HHHHHHHHHHcCCCcCCCCCcc
Confidence 455554 6778999999999999997653
No 48
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=23.95 E-value=2.8e+02 Score=28.78 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=62.8
Q ss_pred HhcCCccc-HHHHHHHHHHHHhhc------CChhHHHHHHHHHHHhhc-chhhhHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013775 132 AAADSFLP-VAALQHFIDAMHNFT------GFNWWASIIVTTLLIRTA-TVPLLINQLKSTSKLTLMRPRLEEIKQDMQD 203 (436)
Q Consensus 132 ~~~~~~~P-v~~lq~lLe~iH~~t------GLpW~~aIil~Ti~vRl~-llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~ 203 (436)
++...|.| -+++|+.|..-+..+ |+--.+.|.+..+.+-.+ .+=...+-.|....|+.. -|..++ |.++
T Consensus 106 ain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~vln~ffvShyiFrWRtAMn~~--ym~~W~-klrh 182 (405)
T COG1133 106 AVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNEY--YMANWQ-KLRH 182 (405)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHH--HHHhhh-hhcc
Confidence 33344555 356666655444332 222334555555665555 344455666766666642 233333 3332
Q ss_pred ccCCHHHHHHHHHHHH---HHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhh
Q 013775 204 KAMDPMAVADGQKRMQ---NLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNM 253 (436)
Q Consensus 204 ~~~D~~~~~~~q~em~---~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~m 253 (436)
-.+..++ .|+..| .....-|++-...+..+..-+||.+.+...+.++
T Consensus 183 IEGasQR---vQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~L 232 (405)
T COG1133 183 IEGASQR---VQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSEL 232 (405)
T ss_pred ccchHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 2112223 344444 4445678887777777788899999887776643
No 49
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.31 E-value=6e+02 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHhh-----------ccCCHHHHHHHHHHHHHH
Q 013775 188 TLMRPRLEEIKQDMQD-----------KAMDPMAVADGQKRMQNL 221 (436)
Q Consensus 188 ~~l~Pel~~i~~k~~~-----------~~~D~~~~~~~q~em~~L 221 (436)
+...++..+|++++.. ...|++++.+..+|+.+|
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~L 101 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENL 101 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3455566666555432 234777666666666544
No 50
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.22 E-value=5.6e+02 Score=23.17 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=28.4
Q ss_pred cCChhHHHHHHHHHHHhh--cchhhhHHHHHHHHHHhhhhHHHHHHHHHHh
Q 013775 154 TGFNWWASIIVTTLLIRT--ATVPLLINQLKSTSKLTLMRPRLEEIKQDMQ 202 (436)
Q Consensus 154 tGLpW~~aIil~Ti~vRl--~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~ 202 (436)
+-..|-.++|.+.+.|=+ +..-|.-.+.+.+.| ++-||+..|.++.
T Consensus 4 t~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~---~q~ELe~~K~~ld 51 (138)
T COG3105 4 TFMTWEYALIGLVVGIIIGALIARLTNRKLKQQQK---LQYELEKVKAQLD 51 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhHHH---HHHHHHHHHHHHH
Confidence 335788888877666544 455666666655554 4456776666654
No 51
>PRK11281 hypothetical protein; Provisional
Probab=21.49 E-value=1.5e+03 Score=27.50 Aligned_cols=31 Identities=6% Similarity=-0.053 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHhhhhccCCccccCCccc
Q 013775 236 LFIQGPVFISFFLAISNMAEKVPSFKNGGAFW 267 (436)
Q Consensus 236 ~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lW 267 (436)
.+.+++++..+|..++.++.+ -|+...+|.|
T Consensus 581 ~~~~~~~~w~~~~~~~~~~~~-~Gl~~~HF~w 611 (1113)
T PRK11281 581 WSLKLALFWLVFATCYRVLRP-NGVAERHFGM 611 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCeeHHhcCC
Confidence 467888888888788888763 3566667777
Done!