Query 013775
Match_columns 436
No_of_seqs 256 out of 1270
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swy_A Cyclic nucleotide-gated 24.5 32 0.0011 24.4 1.6 18 410-427 29-46 (46)
2 3swf_A CGMP-gated cation chann 22.9 36 0.0012 26.5 1.8 20 410-429 31-50 (74)
3 1z65_A PRPLP, prion-like prote 21.5 61 0.0021 20.8 2.3 17 154-171 5-21 (30)
4 2avu_E Flagellar transcription 19.4 1.1E+02 0.0036 28.1 4.4 38 215-252 37-85 (192)
5 3c01_A Surface presentation of 18.9 1.6E+02 0.0056 20.8 4.4 27 195-221 4-30 (48)
6 3bzy_A ESCU; auto cleavage pro 14.8 2.3E+02 0.0079 20.6 4.4 28 194-221 9-36 (54)
7 4abx_A DNA repair protein RECN 13.6 4.1E+02 0.014 23.1 6.8 44 186-229 95-145 (175)
8 4ea3_A Fusion protein of nocic 12.2 8.3E+02 0.028 23.2 9.3 12 347-358 393-404 (434)
9 2esn_A Probable transcriptiona 11.5 1E+02 0.0035 27.9 2.2 16 412-427 37-52 (310)
10 2kmu_A ATP-dependent DNA helic 10.1 2.5E+02 0.0084 20.5 3.3 42 184-225 3-47 (56)
No 1
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.47 E-value=32 Score=24.36 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.8
Q ss_pred ccchHHHhHHHHHHHHhh
Q 013775 410 ISSSAVLSQRIRSLEKQV 427 (436)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (436)
.|+.+-|-|||..||++|
T Consensus 29 ~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 29 NATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 346778999999999875
No 2
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=22.91 E-value=36 Score=26.51 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=16.9
Q ss_pred ccchHHHhHHHHHHHHhhhc
Q 013775 410 ISSSAVLSQRIRSLEKQVKG 429 (436)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (436)
.++..-|-|||..||+++|.
T Consensus 31 ~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 31 ESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44677899999999999885
No 3
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=21.45 E-value=61 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=12.5
Q ss_pred cCChhHHHHHHHHHHHhh
Q 013775 154 TGFNWWASIIVTTLLIRT 171 (436)
Q Consensus 154 tGLpW~~aIil~Ti~vRl 171 (436)
.| .||++|+..-++--+
T Consensus 5 LG-~~wlai~c~LLfs~L 21 (30)
T 1z65_A 5 LG-TWWVAILCMLLASHL 21 (30)
T ss_dssp CS-SHHHHHHHHHHHHHT
T ss_pred hh-hhHHHHHHHHHHhhH
Confidence 35 699999987776554
No 4
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=19.44 E-value=1.1e+02 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=29.8
Q ss_pred HHHHHHHHHH-hCCCCccchhh----------hhhhhHHHHHHHHHHhh
Q 013775 215 QKRMQNLFKE-YGVHPLTPLKG----------LFIQGPVFISFFLAISN 252 (436)
Q Consensus 215 q~em~~LyKk-~gvnP~~~~l~----------~LiQiPIfi~lf~aIr~ 252 (436)
++++.+|||| +|.+|=+|.+| .=|+.-+|+.+|..+.+
T Consensus 37 ~~rl~rLyke~~G~spPkG~lPfS~dWf~tw~~nIhsSlf~~iY~~l~~ 85 (192)
T 2avu_E 37 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 85 (192)
T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCcHHHHhCccHhHHHHHHHHHHHHHHh
Confidence 4667789998 68988777765 23788899999988876
No 5
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=18.87 E-value=1.6e+02 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=17.4
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHH
Q 013775 195 EEIKQDMQDKAMDPMAVADGQKRMQNL 221 (436)
Q Consensus 195 ~~i~~k~~~~~~D~~~~~~~q~em~~L 221 (436)
++++++|++..+||+-..+.++..+++
T Consensus 4 qEvK~E~Ke~EGdP~iK~~~R~~~~e~ 30 (48)
T 3c01_A 4 EEVKREMKEQEGNPEVKSKRREVHMEI 30 (48)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 678899998778997544333333333
No 6
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=14.81 E-value=2.3e+02 Score=20.60 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=17.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 013775 194 LEEIKQDMQDKAMDPMAVADGQKRMQNL 221 (436)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~q~em~~L 221 (436)
-++++++|++..+||+-..+.++..+++
T Consensus 9 kqEvK~E~Ke~EGdP~iK~r~R~~~re~ 36 (54)
T 3bzy_A 9 KDEVKREAKDTDGNPEIKGERRRLHSEI 36 (54)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3678899998778997544333333333
No 7
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=13.55 E-value=4.1e+02 Score=23.06 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=24.3
Q ss_pred HHhhhhHHHHHHHHHHhh----ccCCHHHHHHHHHHH---HHHHHHhCCCC
Q 013775 186 KLTLMRPRLEEIKQDMQD----KAMDPMAVADGQKRM---QNLFKEYGVHP 229 (436)
Q Consensus 186 Km~~l~Pel~~i~~k~~~----~~~D~~~~~~~q~em---~~LyKk~gvnP 229 (436)
++....-+++++...+.. -..||..+.+..+.+ +.|-+|||+.+
T Consensus 95 ~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~ 145 (175)
T 4abx_A 95 ELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTL 145 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 334444444444433321 235898776666555 45668999653
No 8
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=12.19 E-value=8.3e+02 Score=23.25 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=7.9
Q ss_pred HHhcchhHHhhh
Q 013775 347 LVLKVPGVKKML 358 (436)
Q Consensus 347 ~lLr~p~vRk~l 358 (436)
+.++++.+|+.+
T Consensus 393 Y~~~~~~fR~~~ 404 (434)
T 4ea3_A 393 YAFLDENFKACF 404 (434)
T ss_dssp HHHHCHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677777765
No 9
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=11.49 E-value=1e+02 Score=27.95 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.2
Q ss_pred chHHHhHHHHHHHHhh
Q 013775 412 SSAVLSQRIRSLEKQV 427 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~ 427 (436)
+.+.+|++|++||++.
T Consensus 37 sq~avS~~I~~LE~~l 52 (310)
T 2esn_A 37 SASAFSHALGRLRQGL 52 (310)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhh
Confidence 5889999999999874
No 10
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=10.10 E-value=2.5e+02 Score=20.52 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHhhhhHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHHHh
Q 013775 184 TSKLTLMRPRLEEIKQDMQDKA---MDPMAVADGQKRMQNLFKEY 225 (436)
Q Consensus 184 ~aKm~~l~Pel~~i~~k~~~~~---~D~~~~~~~q~em~~LyKk~ 225 (436)
|.++..++-+|+.+...+..+. -+...+...-.++.++||+|
T Consensus 3 me~~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y 47 (56)
T 2kmu_A 3 MERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREY 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHHHHHHHHHHH
Confidence 5667778888888877766421 12233322223366777765
Done!