Query 013775
Match_columns 436
No_of_seqs 256 out of 1270
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 16:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013775.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013775hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 24.1 38 0.0028 27.8 4.6 39 215-253 33-82 (156)
2 d1ixca1 a.4.5.37 (A:1-89) LysR 12.5 48 0.0035 24.0 2.1 16 412-427 28-43 (89)
3 d2hzta1 a.4.5.69 (A:4-98) Puta 12.2 47 0.0034 24.6 2.0 15 412-426 38-52 (95)
4 d2esna1 a.4.5.37 (A:3-91) Prob 10.6 60 0.0043 23.4 2.1 16 412-427 33-48 (89)
5 d2fswa1 a.4.5.69 (A:3-104) Hyp 10.6 56 0.0041 24.5 2.0 15 412-426 47-61 (102)
6 d2ca5a1 a.2.20.1 (A:20-78) Mxi 9.6 2.6E+02 0.019 18.8 5.1 32 189-220 6-37 (59)
7 d1yyva1 a.4.5.69 (A:9-122) Put 9.1 68 0.005 24.5 2.0 15 412-426 51-65 (114)
8 d2cfxa1 a.4.5.32 (A:1-63) Tran 9.0 74 0.0054 21.5 2.0 17 411-427 31-47 (63)
9 d2b7ea1 a.159.2.1 (A:4-59) Pre 7.9 1.4E+02 0.0099 20.2 2.9 19 214-232 2-20 (56)
10 d1z7ua1 a.4.5.69 (A:1-108) Hyp 7.8 87 0.0063 23.6 2.1 15 412-426 46-60 (108)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=24.13 E-value=38 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-hCCCCccchhh----------hhhhhHHHHHHHHHHhhh
Q 013775 215 QKRMQNLFKE-YGVHPLTPLKG----------LFIQGPVFISFFLAISNM 253 (436)
Q Consensus 215 q~em~~LyKk-~gvnP~~~~l~----------~LiQiPIfi~lf~aIr~m 253 (436)
.+++.+|||| +|.+|-+|++| .-|+.-+|+.+|..+.+.
T Consensus 33 ~~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~~ 82 (156)
T d2avue1 33 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKT 82 (156)
T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHhc
Confidence 4567899998 89998888765 247788888999777654
No 2
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=12.47 E-value=48 Score=24.01 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.7
Q ss_pred chHHHhHHHHHHHHhh
Q 013775 412 SSAVLSQRIRSLEKQV 427 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~ 427 (436)
+.+.+|++|++||+..
T Consensus 28 sq~avs~~i~~LE~~l 43 (89)
T d1ixca1 28 SQPPITRQMQALEADL 43 (89)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC
Confidence 4778999999999763
No 3
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=12.16 E-value=47 Score=24.60 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=13.1
Q ss_pred chHHHhHHHHHHHHh
Q 013775 412 SSAVLSQRIRSLEKQ 426 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (436)
+..+||+||+.||..
T Consensus 38 s~~~Ls~rLk~Le~~ 52 (95)
T d2hzta1 38 TQKMLTQQLRELEAD 52 (95)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHh
Confidence 588999999999964
No 4
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.62 E-value=60 Score=23.39 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.0
Q ss_pred chHHHhHHHHHHHHhh
Q 013775 412 SSAVLSQRIRSLEKQV 427 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~ 427 (436)
+.+.+|++|++||+..
T Consensus 33 sq~avs~~l~~lE~~~ 48 (89)
T d2esna1 33 SASAFSHALGRLRQGL 48 (89)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCcHhhHHHHHHHhcC
Confidence 5789999999999874
No 5
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.59 E-value=56 Score=24.49 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.1
Q ss_pred chHHHhHHHHHHHHh
Q 013775 412 SSAVLSQRIRSLEKQ 426 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (436)
+..+||+||+.||..
T Consensus 47 s~~~Ls~rLkeL~~~ 61 (102)
T d2fswa1 47 SEKMLIDELKFLCGK 61 (102)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHC
Confidence 588999999999964
No 6
>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri [TaxId: 623]}
Probab=9.58 E-value=2.6e+02 Score=18.85 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 013775 189 LMRPRLEEIKQDMQDKAMDPMAVADGQKRMQN 220 (436)
Q Consensus 189 ~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~~ 220 (436)
.++-+++.-.++++..-.||..+++.|..+.+
T Consensus 6 ~l~~~l~~Al~~L~~~pSdp~~LA~YQ~klsE 37 (59)
T d2ca5a1 6 TLQGELTLALDKLAKNPSNPQLLAEYQSKLSE 37 (59)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34556666666777666789988888877763
No 7
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=9.08 E-value=68 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=13.1
Q ss_pred chHHHhHHHHHHHHh
Q 013775 412 SSAVLSQRIRSLEKQ 426 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (436)
++.+|++||+.||..
T Consensus 51 s~~~Ls~rL~~Le~~ 65 (114)
T d1yyva1 51 SEKMLAQSLQALEQD 65 (114)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 578999999999965
No 8
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=8.96 E-value=74 Score=21.47 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.8
Q ss_pred cchHHHhHHHHHHHHhh
Q 013775 411 SSSAVLSQRIRSLEKQV 427 (436)
Q Consensus 411 ~~~~~~~~~~~~~~~~~ 427 (436)
-+.+.+.+||++||++.
T Consensus 31 is~~tv~~Ri~~L~~~g 47 (63)
T d2cfxa1 31 LSPPSVTERVRQLESFG 47 (63)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 35678999999999863
No 9
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.87 E-value=1.4e+02 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCCCccc
Q 013775 214 GQKRMQNLFKEYGVHPLTP 232 (436)
Q Consensus 214 ~q~em~~LyKk~gvnP~~~ 232 (436)
+.+..++|.++++|+|...
T Consensus 2 a~~aF~~lL~e~~V~s~wt 20 (56)
T d2b7ea1 2 AEKEFITMLKENQVDSTWS 20 (56)
T ss_dssp HHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHcCCCCCCc
Confidence 4567789999999999765
No 10
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.85 E-value=87 Score=23.60 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=13.2
Q ss_pred chHHHhHHHHHHHHh
Q 013775 412 SSAVLSQRIRSLEKQ 426 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (436)
+..+|++||+.||..
T Consensus 46 S~~~Ls~rLk~L~~~ 60 (108)
T d1z7ua1 46 TQRVLTDRLREMEKD 60 (108)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHC
Confidence 578999999999965
Done!