Query 013776
Match_columns 436
No_of_seqs 197 out of 1283
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 6.2E-35 1.3E-39 299.5 12.1 185 199-435 106-295 (545)
2 cd02660 Peptidase_C19D A subfa 100.0 7.4E-33 1.6E-37 277.5 17.6 185 202-435 1-204 (328)
3 cd02663 Peptidase_C19G A subfa 100.0 4.4E-33 9.4E-38 276.8 15.2 173 203-436 1-177 (300)
4 COG5560 UBP12 Ubiquitin C-term 100.0 8.1E-34 1.8E-38 292.2 9.2 177 199-405 263-450 (823)
5 cd02658 Peptidase_C19B A subfa 100.0 1.8E-32 3.9E-37 273.1 18.4 188 203-436 1-204 (311)
6 COG5533 UBP5 Ubiquitin C-termi 100.0 6.3E-33 1.4E-37 265.8 9.5 208 199-436 69-294 (415)
7 cd02671 Peptidase_C19O A subfa 100.0 6.2E-32 1.4E-36 272.4 17.2 164 200-436 23-210 (332)
8 cd02668 Peptidase_C19L A subfa 100.0 5.9E-32 1.3E-36 271.5 16.2 171 203-435 1-185 (324)
9 cd02661 Peptidase_C19E A subfa 100.0 2.2E-31 4.8E-36 262.7 16.6 186 201-435 1-191 (304)
10 cd02657 Peptidase_C19A A subfa 100.0 1.7E-30 3.7E-35 258.0 16.1 177 203-434 1-183 (305)
11 cd02664 Peptidase_C19H A subfa 100.0 9.6E-30 2.1E-34 256.0 15.1 159 203-436 1-164 (327)
12 cd02659 peptidase_C19C A subfa 100.0 2.4E-29 5.2E-34 252.7 15.1 176 200-435 1-180 (334)
13 cd02669 Peptidase_C19M A subfa 100.0 2.2E-29 4.7E-34 263.0 14.4 168 199-419 117-313 (440)
14 cd02667 Peptidase_C19K A subfa 100.0 3.7E-29 8.1E-34 246.2 13.6 133 203-434 1-139 (279)
15 cd02666 Peptidase_C19J A subfa 99.9 9.6E-28 2.1E-32 242.5 14.3 172 201-425 1-205 (343)
16 KOG1868 Ubiquitin C-terminal h 99.9 5.9E-27 1.3E-31 250.0 10.8 210 197-435 297-526 (653)
17 cd02662 Peptidase_C19F A subfa 99.9 1.8E-26 3.8E-31 222.6 12.0 114 203-432 1-119 (240)
18 KOG0944 Ubiquitin-specific pro 99.9 1.6E-24 3.5E-29 225.4 9.3 186 198-435 304-498 (763)
19 COG5207 UBP14 Isopeptidase T [ 99.9 1.2E-21 2.6E-26 198.4 10.4 178 201-434 303-485 (749)
20 cd02674 Peptidase_C19R A subfa 99.9 9.6E-22 2.1E-26 186.9 9.1 85 303-435 21-113 (230)
21 cd02673 Peptidase_C19Q A subfa 99.8 3.1E-21 6.7E-26 186.8 11.1 107 299-435 28-135 (245)
22 KOG1866 Ubiquitin carboxyl-ter 99.8 6.8E-22 1.5E-26 207.2 6.6 179 196-435 90-275 (944)
23 PF00443 UCH: Ubiquitin carbox 99.8 9.5E-21 2.1E-25 181.1 12.4 149 201-394 1-156 (269)
24 KOG1863 Ubiquitin carboxyl-ter 99.8 3E-21 6.5E-26 220.0 9.2 176 199-436 168-347 (1093)
25 KOG1870 Ubiquitin C-terminal h 99.8 9.4E-21 2E-25 211.1 10.3 178 198-405 243-428 (842)
26 PF13423 UCH_1: Ubiquitin carb 99.8 4.8E-20 1E-24 182.9 13.6 188 202-436 1-190 (295)
27 COG5077 Ubiquitin carboxyl-ter 99.8 2.1E-21 4.6E-26 203.7 3.9 171 199-433 191-362 (1089)
28 KOG1873 Ubiquitin-specific pro 99.8 1.1E-20 2.5E-25 198.5 8.3 177 199-405 203-401 (877)
29 KOG1871 Ubiquitin-specific pro 99.8 1.1E-19 2.4E-24 180.0 13.0 228 199-429 26-285 (420)
30 KOG1867 Ubiquitin-specific pro 99.8 5.2E-20 1.1E-24 193.2 10.5 193 198-436 158-364 (492)
31 cd02665 Peptidase_C19I A subfa 99.8 1.2E-18 2.5E-23 166.7 10.0 97 303-433 21-117 (228)
32 cd02257 Peptidase_C19 Peptidas 99.8 2.7E-18 5.9E-23 161.4 9.7 100 303-433 21-123 (255)
33 cd02672 Peptidase_C19P A subfa 99.7 2.5E-16 5.4E-21 154.5 11.9 126 202-436 16-144 (268)
34 KOG4598 Putative ubiquitin-spe 99.6 5.7E-17 1.2E-21 169.1 -0.6 154 197-436 83-244 (1203)
35 KOG1864 Ubiquitin-specific pro 99.5 7.7E-14 1.7E-18 149.2 8.2 212 200-436 231-451 (587)
36 KOG2026 Spindle pole body prot 99.4 8.2E-13 1.8E-17 131.1 12.0 169 200-424 133-318 (442)
37 KOG1871 Ubiquitin-specific pro 99.3 1.7E-13 3.8E-18 136.3 -1.4 375 1-426 1-404 (420)
38 KOG1872 Ubiquitin-specific pro 99.1 2.1E-11 4.5E-16 124.4 3.7 169 199-419 103-279 (473)
39 KOG1275 PAB-dependent poly(A) 98.9 4.7E-10 1E-14 121.3 4.1 213 155-436 480-711 (1118)
40 cd02670 Peptidase_C19N A subfa 98.2 1.3E-06 2.9E-11 84.5 5.1 72 303-424 22-95 (241)
41 KOG1864 Ubiquitin-specific pro 97.4 0.00011 2.3E-09 79.5 3.9 108 204-323 34-153 (587)
42 PF05408 Peptidase_C28: Foot-a 85.8 0.44 9.6E-06 44.0 1.7 22 201-222 33-54 (193)
43 PF12478 DUF3697: Ubiquitin-as 81.3 0.51 1.1E-05 31.0 0.2 16 42-57 18-33 (33)
44 COG5560 UBP12 Ubiquitin C-term 77.7 1.2 2.6E-05 48.3 1.6 30 406-435 672-704 (823)
45 PF14353 CpXC: CpXC protein 71.1 3 6.5E-05 36.1 2.2 46 381-435 1-47 (128)
46 PF08715 Viral_protease: Papai 63.6 11 0.00023 38.3 4.7 37 279-321 144-180 (320)
47 COG4647 AcxC Acetone carboxyla 58.9 11 0.00023 33.0 3.2 53 380-435 69-129 (165)
48 KOG1870 Ubiquitin C-terminal h 43.2 7.4 0.00016 44.6 -0.3 28 408-435 695-725 (842)
49 KOG1873 Ubiquitin-specific pro 40.2 13 0.00029 41.3 1.2 29 406-434 675-706 (877)
50 KOG3556 Familial cylindromatos 33.4 32 0.00069 36.9 2.6 49 202-253 369-417 (724)
51 PF08882 Acetone_carb_G: Aceto 30.2 26 0.00056 29.9 1.1 52 381-435 24-83 (112)
52 KOG1867 Ubiquitin-specific pro 22.5 18 0.0004 38.8 -1.4 31 200-230 76-106 (492)
53 PF12760 Zn_Tnp_IS1595: Transp 20.3 59 0.0013 22.9 1.2 23 412-434 4-26 (46)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-35 Score=299.52 Aligned_cols=185 Identities=34% Similarity=0.521 Sum_probs=158.1
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhc-cCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~-~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (436)
..++||.|+|||||+|||||||.+||||++||++..+ +.|....+|++|+|+..+.... .+.+.+
T Consensus 106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~--------------~~~g~p 171 (545)
T KOG1865|consen 106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL--------------HNPGHP 171 (545)
T ss_pred cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh--------------cCCCCc
Confidence 4579999999999999999999999999999998754 4556678999999999998654 234669
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCc
Q 013776 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (436)
Q Consensus 278 isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S 357 (436)
|+|..|+..|+.+..+| ..++|+||||||++++|.|+.-+..-.....
T Consensus 172 isP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~--------------------------- 219 (545)
T KOG1865|consen 172 ISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHKQVD--------------------------- 219 (545)
T ss_pred cChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCccCC---------------------------
Confidence 99999999999997776 7899999999999999999998862111100
Q ss_pred ccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCC
Q 013776 358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTG 433 (436)
Q Consensus 358 ~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~ 433 (436)
. ..-..+.|.++|+|-++++|+|. |+++|.++|++++|+|.|. ...+|++||++|+++|.|+| |+|++|+
T Consensus 220 --~--~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck 293 (545)
T KOG1865|consen 220 --P--RSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRCK 293 (545)
T ss_pred --c--ccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchhh
Confidence 0 01113678999999999999997 9999999999999999994 78999999999999999987 9999999
Q ss_pred CC
Q 013776 434 NV 435 (436)
Q Consensus 434 k~ 435 (436)
++
T Consensus 294 ~~ 295 (545)
T KOG1865|consen 294 QK 295 (545)
T ss_pred hh
Confidence 86
No 2
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.4e-33 Score=277.46 Aligned_cols=185 Identities=30% Similarity=0.428 Sum_probs=152.8
Q ss_pred cccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC---CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCcc
Q 013776 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD---IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (436)
Q Consensus 202 ~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~---~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~i 278 (436)
+||.|+||||||||+||+|+++|+|+++++...... ......++.++|+.|+..|+.. .....+
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------------~~~~~~ 67 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS-------------GDRSPY 67 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcC-------------CCCCCc
Confidence 599999999999999999999999999998865432 2344568999999999999522 235678
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcc
Q 013776 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (436)
Q Consensus 279 sP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~ 358 (436)
.|..|+.+++...+.| .++.||||||||.+|||.||+++........
T Consensus 68 ~~~~~l~~~~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~---------------------------- 114 (328)
T cd02660 68 GPINLLYLSWKHSRNL-----AGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN---------------------------- 114 (328)
T ss_pred CHHHHHHHHHhhchhh-----cccccccHHHHHHHHHHHHHHHhhccccccc----------------------------
Confidence 9999999998876654 7899999999999999999999875432100
Q ss_pred cccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCC-------------CCCHHHHHHhccCcccc
Q 013776 359 VTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA-------------VHTIEDALRLFSAPENL 424 (436)
Q Consensus 359 ~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~-------------~~sLed~L~~f~~~E~L 424 (436)
......++|.++|+|++.++++|. |++.+.+.|+|++|+|+||... ..+|++||+.|+++|.+
T Consensus 115 ---~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~ 191 (328)
T cd02660 115 ---DESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL 191 (328)
T ss_pred ---ccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCcccc
Confidence 001113678999999999999996 9999999999999999998642 28999999999999999
Q ss_pred Cc--cccCCCCCC
Q 013776 425 EG--YRTSSTGNV 435 (436)
Q Consensus 425 eg--y~C~kC~k~ 435 (436)
++ |+|++|++.
T Consensus 192 ~~~~~~C~~C~~~ 204 (328)
T cd02660 192 GDFAYKCSGCGST 204 (328)
T ss_pred CCCCccCCCCCCc
Confidence 87 589999985
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.4e-33 Score=276.81 Aligned_cols=173 Identities=26% Similarity=0.346 Sum_probs=141.6
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChHH
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (436)
||.|+||||||||+||+|++ .+++++|+.||..||... ....+|+|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~------------~~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQK------------KRTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCC------------CCCeeECHHH
Confidence 89999999999999999988 468899999999998432 2346799999
Q ss_pred HHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccc
Q 013776 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (436)
Q Consensus 283 ~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~ 362 (436)
|+.+++...+.| .+++||||||||++|||.||+++....+..... ....|.. .
T Consensus 49 f~~~l~~~~~~f-----~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~-----------~~~~~~~-----------~ 101 (300)
T cd02663 49 FITRLKRENELF-----DNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN-----------RKLNNNN-----------N 101 (300)
T ss_pred HHHHHHhhcCCC-----CCCccccHHHHHHHHHHHHHHHHHHHhhccccc-----------ccccccc-----------c
Confidence 999999887665 899999999999999999999998654332210 0000100 0
Q ss_pred cccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCCCCC
Q 013776 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNVQ 436 (436)
Q Consensus 363 ~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~k~~ 436 (436)
.....++|.++|+|++.++++|. |++.+.+.|+|++|+|+||. ..+|++||+.|+++|.++| |+|++|++.+
T Consensus 102 ~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~--~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 177 (300)
T cd02663 102 AEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ--NTSITSCLRQFSATETLCGRNKFYCDECCSLQ 177 (300)
T ss_pred CCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCC--cCCHHHHHHHhhcccccCCCCcEECCCCCCce
Confidence 11224678999999999999996 99999999999999999975 6899999999999999987 8999998753
No 4
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-34 Score=292.16 Aligned_cols=177 Identities=24% Similarity=0.377 Sum_probs=152.9
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhh------ccCCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR------TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~------~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~ 272 (436)
.+.|||+|+||||||||+||||.||+.||.|++.-. ..++.+..+.++.+++.|+.++...
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~------------- 329 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG------------- 329 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc-------------
Confidence 467999999999999999999999999999997543 2344566678999999999999744
Q ss_pred CCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCC----CcccccchhhhhhH
Q 013776 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSING----ANTALVSLAEEDEW 348 (436)
Q Consensus 273 ~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~----~~~~~~~~~~~~~w 348 (436)
...++.|..|+..++.+ |..|.||.|||.|||+.||||.|||+++++.++++.... .....+...+++-|
T Consensus 330 -~~haf~Ps~fK~tIG~f-----n~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW 403 (823)
T COG5560 330 -NLHAFTPSGFKKTIGSF-----NEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECW 403 (823)
T ss_pred -cccccChHHHHHHHhhh-----HHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHH
Confidence 37899999999999998 556699999999999999999999999999998873221 22233567889999
Q ss_pred hhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCC
Q 013776 349 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS 405 (436)
Q Consensus 349 ~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~ 405 (436)
..|..+|+|++ .++|+|.++|++.|. |+.+|+++|||++|+||+|-
T Consensus 404 ~~H~kRNdSiI-----------tdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPv 450 (823)
T COG5560 404 WEHLKRNDSII-----------TDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPV 450 (823)
T ss_pred HHHHhcCcccH-----------HHHHHHHhhceeeccCcCceeeeecchhhccccCch
Confidence 99999999764 899999999999997 99999999999999999984
No 5
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-32 Score=273.10 Aligned_cols=188 Identities=23% Similarity=0.300 Sum_probs=148.8
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC---CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccC
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD---IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~---~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (436)
||.|+||||||||+||||+++|+||++|+...... ......++.++|++|+..|+...................+|+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999998743221 122345799999999999874321100000001112356899
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccc
Q 013776 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (436)
Q Consensus 280 P~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~ 359 (436)
|..|+.+++...|.| ..+.||||||||++|||.|++++....
T Consensus 81 p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 122 (311)
T cd02658 81 PSMFKALIGKGHPEF-----STMRQQDALEFLLHLIDKLDRESFKNL--------------------------------- 122 (311)
T ss_pred cHHHHHHHhccChhh-----cccccccHHHHHHHHHHHHHHhhcccc---------------------------------
Confidence 999999999887776 789999999999999999999875211
Q ss_pred ccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCC------------CCCHHHHHHhccCccccCc
Q 013776 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPENLEG 426 (436)
Q Consensus 360 ~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~------------~~sLed~L~~f~~~E~Leg 426 (436)
...+.++|+|.++++++|. |++++.+.|+|++|+|+||... ..+|++||+.|+.+|.++
T Consensus 123 -------~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~- 194 (311)
T cd02658 123 -------GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE- 194 (311)
T ss_pred -------cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc-
Confidence 1235789999999999996 9999999999999999998643 359999999999999998
Q ss_pred cccCCCCCCC
Q 013776 427 YRTSSTGNVQ 436 (436)
Q Consensus 427 y~C~kC~k~~ 436 (436)
++|++|++.+
T Consensus 195 ~~C~~C~~~~ 204 (311)
T cd02658 195 DFCSTCKEKT 204 (311)
T ss_pred ccccCCCCcc
Confidence 6899999753
No 6
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.3e-33 Score=265.85 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=163.1
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHh------hhccCCCCCCC-cHHHHHHHHHHhcCCCCCCCCccccccc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQE------LRTRDIPKAGY-PTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~------~~~~~~~~~~~-~l~~~L~~L~~~l~~~~~~~~~~~~~~~ 271 (436)
..|.||+|.|||||||++||||+.+..+...|+. .....+.+..+ -+...|.-|...+..
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~------------- 135 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGC------------- 135 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhcccc-------------
Confidence 4579999999999999999999999999874432 22333333333 344556666555542
Q ss_pred cCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCC--ccCC-----Ccccccchhh
Q 013776 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST--SING-----ANTALVSLAE 344 (436)
Q Consensus 272 ~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~--~~~~-----~~~~~~~~~~ 344 (436)
.....|+|..|+..+..+ |++|.+-.|||||||+.|+||.|||+++.-..+.. ++.+ .+..+..-..
T Consensus 136 -Hg~~sis~~nF~~i~~~~-----n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S 209 (415)
T COG5533 136 -HGPKSISPRNFIDILSGR-----NKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFS 209 (415)
T ss_pred -CCCcccchHHHHHHHccc-----cccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhh
Confidence 235679999999999987 55568999999999999999999999986554432 1211 1222233445
Q ss_pred hhhHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccc
Q 013776 345 EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPEN 423 (436)
Q Consensus 345 ~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~ 423 (436)
.-+|+.+.+-+.|+ |.+.|.|++.++++|. |+++|+++.+|..|.+|++.-....|+|||+.|.++|.
T Consensus 210 ~~EWn~~L~sn~S~-----------v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~ 278 (415)
T COG5533 210 HHEWNLHLRSNKSL-----------VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEK 278 (415)
T ss_pred hhhhHHhhccchHH-----------HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHh
Confidence 67899999988866 4799999999999996 99999999999999999987666789999999999999
Q ss_pred cCc---cccCCCCCCC
Q 013776 424 LEG---YRTSSTGNVQ 436 (436)
Q Consensus 424 Leg---y~C~kC~k~~ 436 (436)
|+| |+|++|++.|
T Consensus 279 L~g~d~W~CpkC~~k~ 294 (415)
T COG5533 279 LEGKDAWRCPKCGRKE 294 (415)
T ss_pred hcCcccccCchhcccc
Confidence 987 9999999875
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=6.2e-32 Score=272.37 Aligned_cols=164 Identities=23% Similarity=0.287 Sum_probs=132.3
Q ss_pred cCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHH---HhcCCCCCCCCccccccccCCCC
Q 013776 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFV---SDFDTPSGGSSKKKNISVLDIGR 276 (436)
Q Consensus 200 ~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~---~~l~~~~~~~~~~~~~~~~~~~~ 276 (436)
+.+||.|+||||||||+||+|+++|+|++++....... .....++.++ ..++. ....
T Consensus 23 ~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~------~~~~~~q~~~~~l~~~~~--------------~~~~ 82 (332)
T cd02671 23 PFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI------SSVEQLQSSFLLNPEKYN--------------DELA 82 (332)
T ss_pred CCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc------CcHHHHHHHHHHHHHHHh--------------hccc
Confidence 46999999999999999999999999999987664211 0112222222 22221 1123
Q ss_pred ccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCC
Q 013776 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (436)
Q Consensus 277 ~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~ 356 (436)
.++|..|+.++++..|.| .++.||||||||++|||.|++.
T Consensus 83 ~~~P~~~~~~l~~~~~~f-----~~~~QQDA~EFl~~LLd~L~~~----------------------------------- 122 (332)
T cd02671 83 NQAPRRLLNALREVNPMY-----EGYLQHDAQEVLQCILGNIQEL----------------------------------- 122 (332)
T ss_pred ccCHHHHHHHHHHhcccc-----CCccccCHHHHHHHHHHHHHHH-----------------------------------
Confidence 457999999999987765 8899999999999999999842
Q ss_pred cccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCC-----------------CCCHHHHHHhc
Q 013776 357 SAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA-----------------VHTIEDALRLF 418 (436)
Q Consensus 357 S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~-----------------~~sLed~L~~f 418 (436)
|.++|+|++.++++|. |++.+.+.|+|++|+|||+... ..+|++||+.|
T Consensus 123 -------------i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f 189 (332)
T cd02671 123 -------------VEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQF 189 (332)
T ss_pred -------------HHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHh
Confidence 3689999999999996 9999999999999999998642 36999999999
Q ss_pred cCccccCc---cccCCCCCCC
Q 013776 419 SAPENLEG---YRTSSTGNVQ 436 (436)
Q Consensus 419 ~~~E~Leg---y~C~kC~k~~ 436 (436)
+++|.|+| |+|++|++.+
T Consensus 190 ~~~E~l~g~n~y~C~~C~~~~ 210 (332)
T cd02671 190 ASVERIVGEDKYFCENCHHYT 210 (332)
T ss_pred CCcceecCCCCeeCCCCCCce
Confidence 99999976 9999998763
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=5.9e-32 Score=271.47 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=143.5
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCC----------CCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI----------PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~----------~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~ 272 (436)
||.|+||||||||+||+|+++|+|+++++....... +....+++++|+.|+.+||..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~------------- 67 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG------------- 67 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC-------------
Confidence 899999999999999999999999999987643221 112357999999999999843
Q ss_pred CCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhC
Q 013776 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (436)
Q Consensus 273 ~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (436)
...+++|..|..+++. ..++||||||||.+|||.||+++......
T Consensus 68 -~~~~i~p~~f~~~l~~----------~~~~QqDa~EFl~~lLd~L~~~l~~~~~~------------------------ 112 (324)
T cd02668 68 -NRSVVDPSGFVKALGL----------DTGQQQDAQEFSKLFLSLLEAKLSKSKNP------------------------ 112 (324)
T ss_pred -CCceEChHHHHHHhCC----------CCccccCHHHHHHHHHHHHHHHHhhccCC------------------------
Confidence 3568999999988742 56899999999999999999988632100
Q ss_pred CCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cc
Q 013776 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR 428 (436)
Q Consensus 353 ~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~ 428 (436)
...++|.++|+|++.++++|. |++.+.+.|+|++|+|+||. ..+|++||+.|+++|.++| |.
T Consensus 113 ------------~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~--~~sl~~~L~~~~~~e~l~g~~~~~ 178 (324)
T cd02668 113 ------------DLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG--HKTLEECIDEFLKEEQLTGDNQYF 178 (324)
T ss_pred ------------cccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecc--cCCHHHHHHHhhCceecCCCcccc
Confidence 012567899999999999996 99999999999999999964 5799999999999999987 89
Q ss_pred cCCCCCC
Q 013776 429 TSSTGNV 435 (436)
Q Consensus 429 C~kC~k~ 435 (436)
|++|++.
T Consensus 179 C~~C~~~ 185 (324)
T cd02668 179 CESCNSK 185 (324)
T ss_pred CCCCCce
Confidence 9999975
No 9
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.2e-31 Score=262.72 Aligned_cols=186 Identities=33% Similarity=0.503 Sum_probs=151.9
Q ss_pred CcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc-CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccC
Q 013776 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (436)
Q Consensus 201 p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~-~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (436)
|+||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.++..|+.. ....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~ 66 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS--------------SGPGSA 66 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhC--------------CCCccC
Confidence 689999999999999999999999999999865433 22334568999999999887632 356789
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccc
Q 013776 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (436)
Q Consensus 280 P~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~ 359 (436)
|..|..++..+.+.| ..+.||||+|||.+||+.||+++.........
T Consensus 67 p~~~~~~l~~~~~~f-----~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~---------------------------- 113 (304)
T cd02661 67 PRIFSSNLKQISKHF-----RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA---------------------------- 113 (304)
T ss_pred hHHHHHHHHHHHHhh-----cCcchhhHHHHHHHHHHHHHHHHhhhcccccc----------------------------
Confidence 999999999886665 78999999999999999999987643321100
Q ss_pred ccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCCCC
Q 013776 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNV 435 (436)
Q Consensus 360 ~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~k~ 435 (436)
........++|.++|+|++.++++|. |++.+.++|+|+.|+|+||.. .+|+++|+.|+++|.+++ |+|++|++.
T Consensus 114 ~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~--~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~ 191 (304)
T cd02661 114 VDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA--DSLEDALEQFTKPEQLDGENKYKCERCKKK 191 (304)
T ss_pred cCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC--CcHHHHHHHhcCceeeCCCCCeeCCCCCCc
Confidence 00001113678999999999999996 999999999999999999753 799999999999999987 899999975
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.7e-30 Score=258.04 Aligned_cols=177 Identities=23% Similarity=0.304 Sum_probs=145.0
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC--CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccCh
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 280 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~--~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP 280 (436)
||.|+||||||||+||+|+++|+|++++++..... ......+++++|+.|+..|+. ....++|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~---------------~~~~i~p 65 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDK---------------KQEPVPP 65 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHh---------------CCCcCCc
Confidence 89999999999999999999999999998876431 223456899999999999972 2448999
Q ss_pred HHHHHHHHhhCCCCCCCCC-CCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccc
Q 013776 281 SMFEAVLKNFTPDVPNSIS-GRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (436)
Q Consensus 281 ~~~~~~l~~~~p~f~n~~f-~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~ 359 (436)
..|+..+++..+.|..... .+++|||||||+.+|||.|++++....
T Consensus 66 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~--------------------------------- 112 (305)
T cd02657 66 IEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAG--------------------------------- 112 (305)
T ss_pred HHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccC---------------------------------
Confidence 9999999998777621111 456999999999999999999975310
Q ss_pred ccccccCCCccccCceEEEEEEEEeC-CC-CeeeeeecceeEEEecCCC-CCCCHHHHHHhccCccccCccccCCCCC
Q 013776 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GN-KASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGN 434 (436)
Q Consensus 360 ~r~~~~~~s~I~~lF~G~l~s~I~C~-C~-~~S~~~E~F~~LsL~Ip~~-~~~sLed~L~~f~~~E~Legy~C~kC~k 434 (436)
...++|.++|+|++.+.++|. |+ .++.+.|+|++|+|+||.. ...+|++||+.+++++.. .+|+.|++
T Consensus 113 -----~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~ 183 (305)
T cd02657 113 -----SKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE--KHSPTLGR 183 (305)
T ss_pred -----CCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh--hcCcccCC
Confidence 012557999999999999996 99 7999999999999999864 257899999999987765 46888875
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=9.6e-30 Score=256.00 Aligned_cols=159 Identities=27% Similarity=0.470 Sum_probs=132.6
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChHH
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (436)
||.|+||||||||+||+|+++|+||+++++..... ......+..+|+.++..|... ...++.|..
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~--------------~~~~~~~~~ 65 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHT--------------QRRAEAPPD 65 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhc--------------CCcccCCHH
Confidence 89999999999999999999999999999876432 123456788999999887522 244566665
Q ss_pred -HHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccccc
Q 013776 283 -FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 361 (436)
Q Consensus 283 -~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r 361 (436)
++..+. .+. |..+.|||||||+.+|||.|+.
T Consensus 66 ~~l~~~~--~~~-----f~~~~QqDa~EFl~~lLd~l~~----------------------------------------- 97 (327)
T cd02664 66 YFLEASR--PPW-----FTPGSQQDCSEYLRYLLDRLHT----------------------------------------- 97 (327)
T ss_pred HHHHHhc--ccc-----cCCCCcCCHHHHHHHHHHHHHH-----------------------------------------
Confidence 555443 233 4788999999999999999992
Q ss_pred ccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCCCCC
Q 013776 362 TQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNVQ 436 (436)
Q Consensus 362 ~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~k~~ 436 (436)
+|.++|+|++.++++|. |++++.+.|+|.+|+|+|| +|++||+.|+++|.++| |+|++|++.+
T Consensus 98 -------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-----sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~ 164 (327)
T cd02664 98 -------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-----SVQDLLNYFLSPEKLTGDNQYYCEKCASLQ 164 (327)
T ss_pred -------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC-----CHHHHHHHhcCeeEccCCCceeCCccCCcc
Confidence 14789999999999996 9999999999999999997 89999999999999987 9999998863
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.4e-29 Score=252.70 Aligned_cols=176 Identities=20% Similarity=0.304 Sum_probs=140.0
Q ss_pred cCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccC
Q 013776 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (436)
Q Consensus 200 ~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (436)
+.+||.|+||||||||+||+|+++|+|+++++............++.++|+.|+..|+... ...+.
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~--------------~~~~~ 66 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSE--------------SPVKT 66 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCC--------------ccccC
Confidence 3589999999999999999999999999999986322223345679999999999987432 23344
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccc
Q 013776 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (436)
Q Consensus 280 P~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~ 359 (436)
|..+. .+..+. +..|..++||||||||.+||+.|++++....
T Consensus 67 ~~~~~-~~~~~~----~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 108 (334)
T cd02659 67 TELTD-KTRSFG----WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG--------------------------------- 108 (334)
T ss_pred cchhh-eeccCC----CCCCCcccchhHHHHHHHHHHHHHHHhccCc---------------------------------
Confidence 44433 222221 2235788999999999999999999875311
Q ss_pred ccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCCCC
Q 013776 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNV 435 (436)
Q Consensus 360 ~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~k~ 435 (436)
..++|.++|+|.+...++|. |++.+.+.++|++|+|++|. ..+|+++|+.|+.+|.++| |.|++|++.
T Consensus 109 ------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~--~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~ 180 (334)
T cd02659 109 ------QEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKG--KKNLEESLDAYVQGETLEGDNKYFCEKCGKK 180 (334)
T ss_pred ------ccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCC--CCCHHHHHHHhcCeeEecCCccEecCcCCCc
Confidence 01457899999999999995 99999999999999999964 5799999999999999987 999999975
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.2e-29 Score=262.96 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=131.6
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC-CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~-~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (436)
++.+||.|+|||||||||||+|+++|+||++++...... ......++.++|+.++..||... ....+
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~------------~~~~~ 184 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR------------NFKGH 184 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc------------cCCCc
Confidence 357999999999999999999999999999998764331 11235689999999999998432 23568
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCc
Q 013776 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (436)
Q Consensus 278 isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S 357 (436)
|+|..|+.+++...+. .|.+++||||||||++|||.||+++.+..+.
T Consensus 185 isP~~fl~~l~~~~~~----~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~----------------------------- 231 (440)
T cd02669 185 VSPHELLQAVSKVSKK----KFSITEQSDPVEFLSWLLNTLHKDLGGSKKP----------------------------- 231 (440)
T ss_pred cCHHHHHHHHHhhccc----ccCCcccCCHHHHHHHHHHHHHHHhccCCCC-----------------------------
Confidence 9999999999876432 3589999999999999999999998642110
Q ss_pred ccccccccCCCccccCceEEEEEEEEeC-CC---------------CeeeeeecceeEEEecCCCC------------CC
Q 013776 358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GN---------------KASATVQPFLLLHLDIYSEA------------VH 409 (436)
Q Consensus 358 ~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~---------------~~S~~~E~F~~LsL~Ip~~~------------~~ 409 (436)
..++|.++|+|+++++++|. |. .++.+.+||++|+|+||... ..
T Consensus 232 --------~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~ 303 (440)
T cd02669 232 --------NSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQV 303 (440)
T ss_pred --------CCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcc
Confidence 12568999999999999884 43 35778999999999998642 14
Q ss_pred CHHHHHHhcc
Q 013776 410 TIEDALRLFS 419 (436)
Q Consensus 410 sLed~L~~f~ 419 (436)
+|+++|+.|.
T Consensus 304 ~l~e~L~ky~ 313 (440)
T cd02669 304 PLKQLLKKYD 313 (440)
T ss_pred cHHHHHHhcC
Confidence 6667665544
No 14
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=3.7e-29 Score=246.24 Aligned_cols=133 Identities=31% Similarity=0.525 Sum_probs=118.3
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChHH
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (436)
||.|+||||||||+||+|+++|+|+++++. +|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~----------------------------------------------~P~~ 34 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE----------------------------------------------TPKE 34 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH----------------------------------------------CHHH
Confidence 899999999999999999999999999986 5566
Q ss_pred HHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccc
Q 013776 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (436)
Q Consensus 283 ~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~ 362 (436)
|+..+....+.| .+++||||||||.+|||.|+.
T Consensus 35 ~~~~l~~~~~~f-----~~~~QqDA~Efl~~lld~l~~------------------------------------------ 67 (279)
T cd02667 35 LFSQVCRKAPQF-----KGYQQQDSHELLRYLLDGLRT------------------------------------------ 67 (279)
T ss_pred HHHHHHHhhHhh-----cCCchhhHHHHHHHHHHHHHH------------------------------------------
Confidence 777777665655 789999999999999999992
Q ss_pred cccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCC--CCCCCHHHHHHhccCccccCc---cccCCCCC
Q 013776 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS--EAVHTIEDALRLFSAPENLEG---YRTSSTGN 434 (436)
Q Consensus 363 ~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~--~~~~sLed~L~~f~~~E~Leg---y~C~kC~k 434 (436)
+|.++|+|+++++++|. |++.+.+.|+|++|+||++. ....+|++||+.|+++|.|+| |.|++|++
T Consensus 68 ------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~ 139 (279)
T cd02667 68 ------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK 139 (279)
T ss_pred ------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc
Confidence 14789999999999996 99999999999999999864 345899999999999999987 89999986
No 15
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=9.6e-28 Score=242.48 Aligned_cols=172 Identities=22% Similarity=0.313 Sum_probs=132.6
Q ss_pred CcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC------------CCCC---------CCcHHHHHHHHHHhcCCC
Q 013776 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD------------IPKA---------GYPTLTAFVGFVSDFDTP 259 (436)
Q Consensus 201 p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~------------~~~~---------~~~l~~~L~~L~~~l~~~ 259 (436)
|+||.|+||||||||+||+|+++|+||++++...... ..+. ..+++.+|+.||..|+.
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~- 79 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIH- 79 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHh-
Confidence 6899999999999999999999999999998765210 0001 12588999999999973
Q ss_pred CCCCCccccccccCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccc
Q 013776 260 SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTAL 339 (436)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~ 339 (436)
....++.|..++..+. ..|||||||+..||++||+++........ .+.
T Consensus 80 -------------s~~~~v~P~~~l~~l~-------------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~---~~~--- 127 (343)
T cd02666 80 -------------SNTRSVTPSKELAYLA-------------LRQQDVTECIDNVLFQLEVALEPISNAFA---GPD--- 127 (343)
T ss_pred -------------CCCCccCcHHHHHhcc-------------ccccchHHHHHHHHHHHHHHhcCcccccc---Ccc---
Confidence 2367899999887543 28999999999999999999874332111 000
Q ss_pred cchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CC---CeeeeeecceeEEEecCC--------CC
Q 013776 340 VSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GN---KASATVQPFLLLHLDIYS--------EA 407 (436)
Q Consensus 340 ~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~---~~S~~~E~F~~LsL~Ip~--------~~ 407 (436)
.. ......++|.++|.|+++++++|+ |. ..+.+.|+|++|+|+|+. .+
T Consensus 128 ---------~~-----------~~~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~ 187 (343)
T cd02666 128 ---------TE-----------DDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLE 187 (343)
T ss_pred ---------cc-----------cccchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCC
Confidence 00 001123678999999999999985 65 789999999999999964 15
Q ss_pred CCCHHHHHHhccCccccC
Q 013776 408 VHTIEDALRLFSAPENLE 425 (436)
Q Consensus 408 ~~sLed~L~~f~~~E~Le 425 (436)
..+|.+||+.||+.|.+.
T Consensus 188 ~~~L~d~L~~~~~~e~~~ 205 (343)
T cd02666 188 PKDLYDALDRYFDYDSLT 205 (343)
T ss_pred CCCHHHHHHHhcChhhhc
Confidence 789999999999998754
No 16
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.9e-27 Score=250.04 Aligned_cols=210 Identities=29% Similarity=0.366 Sum_probs=164.8
Q ss_pred cCccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc-----CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 013776 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-----DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (436)
Q Consensus 197 ~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~-----~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~ 271 (436)
...+++||.|+|||||||++||||+.|+.|+..++..... +......++..++..++..+|..
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~------------ 364 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHG------------ 364 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccC------------
Confidence 3356799999999999999999999999999665544221 22334457788888888877744
Q ss_pred cCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCC--ccC-----CCcccccchhh
Q 013776 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST--SIN-----GANTALVSLAE 344 (436)
Q Consensus 272 ~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~--~~~-----~~~~~~~~~~~ 344 (436)
.....+.|..|+..+++..+.| .++.|||||||+.++||.||+++........ +.. ...........
T Consensus 365 -~~~~s~~P~~f~~~~~~y~~~~-----~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s 438 (653)
T KOG1868|consen 365 -HGQFSVLPRRFIRVLKRYSPNF-----SGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKS 438 (653)
T ss_pred -CCceecCcHHHHHHHhhccccc-----ccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchh
Confidence 2466799999999999998776 6789999999999999999999987654211 111 11112233344
Q ss_pred hhhHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCC----CCHHHHHHhcc
Q 013776 345 EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAV----HTIEDALRLFS 419 (436)
Q Consensus 345 ~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~----~sLed~L~~f~ 419 (436)
...|.......++ .|.++|.|++++.++|. |++.+.++++|++|+|+||..+. .+|++|++.|+
T Consensus 439 ~~~w~~~~~~~d~-----------~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft 507 (653)
T KOG1868|consen 439 LAEWLRYLEEEDS-----------KIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFT 507 (653)
T ss_pred HHHHHhhccccch-----------HHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhcccc
Confidence 6678777664443 26899999999999996 99999999999999999997654 45999999999
Q ss_pred CccccCc---cccCCCCCC
Q 013776 420 APENLEG---YRTSSTGNV 435 (436)
Q Consensus 420 ~~E~Leg---y~C~kC~k~ 435 (436)
+.|.+++ |.|++|++.
T Consensus 508 ~~ekle~~~~w~Cp~c~~~ 526 (653)
T KOG1868|consen 508 KEEKLEGDEAWLCPRCKHK 526 (653)
T ss_pred chhhcccccccCCccccCc
Confidence 9999999 999999875
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=1.8e-26 Score=222.60 Aligned_cols=114 Identities=30% Similarity=0.513 Sum_probs=103.9
Q ss_pred ccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChHH
Q 013776 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (436)
Q Consensus 203 GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (436)
||+|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999887432
Q ss_pred HHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccc
Q 013776 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (436)
Q Consensus 283 ~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~ 362 (436)
.||||||||+.||+.|+..
T Consensus 33 --------------------~QqDa~EFl~~ll~~l~~~----------------------------------------- 51 (240)
T cd02662 33 --------------------EQQDAHELFQVLLETLEQL----------------------------------------- 51 (240)
T ss_pred --------------------hhcCHHHHHHHHHHHHHHh-----------------------------------------
Confidence 7999999999999999921
Q ss_pred cccCCCccccCceEEEEEEEEeC-CCCeee-eeecceeEEEecCCCC---CCCHHHHHHhccCccccCccccCCC
Q 013776 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASA-TVQPFLLLHLDIYSEA---VHTIEDALRLFSAPENLEGYRTSST 432 (436)
Q Consensus 363 ~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~-~~E~F~~LsL~Ip~~~---~~sLed~L~~f~~~E~Legy~C~kC 432 (436)
+.++|.|++.+.++|. |++.+. ++|+|++|+|+||... ..+|++||+.|+++|.+++|+|++|
T Consensus 52 -------i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~~~C~~C 119 (240)
T cd02662 52 -------LKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYKCDRC 119 (240)
T ss_pred -------ccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccCcCCCCC
Confidence 3689999999999996 999866 4999999999999764 5899999999999999999999999
No 18
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-24 Score=225.36 Aligned_cols=186 Identities=22% Similarity=0.304 Sum_probs=150.1
Q ss_pred CccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhc-c--CCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc-C
Q 013776 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-R--DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL-D 273 (436)
Q Consensus 198 ~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~-~--~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~-~ 273 (436)
+++.+||+|+||+||||||||+|+++|.|...+....+ - .+.....++.|++.+|...|......+- .+. .
T Consensus 304 gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p-----~~~~~ 378 (763)
T KOG0944|consen 304 GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKP-----LMDPS 378 (763)
T ss_pred CCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCc-----cCCcc
Confidence 35569999999999999999999999999988776621 1 1234456889999999999876543221 001 1
Q ss_pred CCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCC
Q 013776 274 IGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGP 353 (436)
Q Consensus 274 ~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 353 (436)
...-|+|.+|+.++++-+|.| ...+||||||||++||+.|++......
T Consensus 379 ~qngIsP~mFK~~igknHpeF-----st~~QQDA~EFllfLl~ki~~n~rs~~--------------------------- 426 (763)
T KOG0944|consen 379 NQNGISPLMFKALIGKNHPEF-----STNRQQDAQEFLLFLLEKIRENSRSSL--------------------------- 426 (763)
T ss_pred ccCCcCHHHHHHHHcCCCccc-----cchhhhhHHHHHHHHHHHHhhcccccC---------------------------
Confidence 146899999999999998887 889999999999999999997542110
Q ss_pred CCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCC----CCCCCHHHHHHhccCccccCccc
Q 013776 354 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS----EAVHTIEDALRLFSAPENLEGYR 428 (436)
Q Consensus 354 ~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~----~~~~sLed~L~~f~~~E~Legy~ 428 (436)
..+.++|...+..++.|. |.+++.++++-+.|.||||. ...+++..||++||.| .+++|+
T Consensus 427 --------------~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~df~ 491 (763)
T KOG0944|consen 427 --------------PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDDFW 491 (763)
T ss_pred --------------CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchhhh
Confidence 235899999999999997 99999999999999999985 2247999999999999 666799
Q ss_pred cCCCCCC
Q 013776 429 TSSTGNV 435 (436)
Q Consensus 429 C~kC~k~ 435 (436)
|..||..
T Consensus 492 s~ac~~K 498 (763)
T KOG0944|consen 492 STACGEK 498 (763)
T ss_pred hHhhcCc
Confidence 9999853
No 19
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=198.36 Aligned_cols=178 Identities=18% Similarity=0.308 Sum_probs=144.6
Q ss_pred CcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCC---CCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCc
Q 013776 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP---KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (436)
Q Consensus 201 p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~---~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (436)
.+||+|+||+||+|||+|.|++.-.+..-+.-+.+.... -...++.|++.+|+..|...- ......-
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p----------~~~y~ng 372 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETP----------DNEYVNG 372 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCC----------CccccCC
Confidence 589999999999999999999998887665544433222 234577888888888775321 1234567
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCc
Q 013776 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (436)
Q Consensus 278 isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S 357 (436)
|+|..|+.+++.-++.| +..+||||||||.|||+.|++......
T Consensus 373 i~p~~fk~~igq~h~eF-----g~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------- 416 (749)
T COG5207 373 ISPLDFKMLIGQDHPEF-----GKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------- 416 (749)
T ss_pred cChhhHHHHHcCCchhh-----hhhhhhhHHHHHHHHHHHHhhccchhc-------------------------------
Confidence 99999999999988876 789999999999999999987543211
Q ss_pred ccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCC-CCCCHHHHHHhccCccccCccccCCCCC
Q 013776 358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGN 434 (436)
Q Consensus 358 ~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~-~~~sLed~L~~f~~~E~Legy~C~kC~k 434 (436)
.++|.++|...+..++.|. |..++..+++...+-+++... ...++.+++++||.+++++ |.|+.|+.
T Consensus 417 ---------~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE-~~CenCk~ 485 (749)
T COG5207 417 ---------IPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE-WSCENCKG 485 (749)
T ss_pred ---------CCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee-eehhhhcC
Confidence 2668999999999999996 999999999999999988432 2489999999999999998 99999974
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.85 E-value=9.6e-22 Score=186.92 Aligned_cols=85 Identities=42% Similarity=0.665 Sum_probs=77.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEE
Q 013776 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (436)
Q Consensus 303 ~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I 382 (436)
.|||||||+++||+.|+. +|.++|+|++.+++
T Consensus 21 ~QqDa~Ef~~~ll~~l~~------------------------------------------------~i~~~F~~~~~~~~ 52 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS------------------------------------------------IIVDLFQGQLKSRL 52 (230)
T ss_pred hhhhHHHHHHHHHHHHhh------------------------------------------------hHHheeCCEEeCcE
Confidence 799999999999999991 14789999999999
Q ss_pred EeC-CCCeeeeeecceeEEEecCCCC----CCCHHHHHHhccCccccCc---cccCCCCCC
Q 013776 383 KAQ-GNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEG---YRTSSTGNV 435 (436)
Q Consensus 383 ~C~-C~~~S~~~E~F~~LsL~Ip~~~----~~sLed~L~~f~~~E~Leg---y~C~kC~k~ 435 (436)
+|. |++.+.+.|+|+.|+|+||... ..+|+++|+.|+++|.++| +.|++|++.
T Consensus 53 ~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~ 113 (230)
T cd02674 53 TCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKK 113 (230)
T ss_pred EcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCc
Confidence 996 9999999999999999999754 5799999999999999987 899999875
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.85 E-value=3.1e-21 Score=186.80 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=83.6
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEE
Q 013776 299 SGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378 (436)
Q Consensus 299 f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l 378 (436)
|.+++||||||||++|||.|++++......... ...+. ......++|+|++
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~----------------------~~~~~-------~~~~~~~~F~~~l 78 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPP----------------------SNIEI-------KRLNPLEAFKYTI 78 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCCC----------------------Ccccc-------cccCHhHheeeEE
Confidence 388999999999999999999987543211100 00000 0011257899999
Q ss_pred EEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCccccCCCCCC
Q 013776 379 KSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNV 435 (436)
Q Consensus 379 ~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Legy~C~kC~k~ 435 (436)
++.++|. |++++.+.|+|++|+|+||......|++|++.|++.+.++ |+|++|++.
T Consensus 79 ~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e-~~C~~C~~~ 135 (245)
T cd02673 79 ESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE-KDCSSCKCE 135 (245)
T ss_pred EeEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHhhcccccC-ccCCCCCCc
Confidence 9999995 9999999999999999998765678999999999988886 999999874
No 22
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.8e-22 Score=207.21 Aligned_cols=179 Identities=23% Similarity=0.317 Sum_probs=150.5
Q ss_pred ccCccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCC-C--CCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 013776 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI-P--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (436)
Q Consensus 196 ~~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~-~--~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~ 272 (436)
..+.+.+||+|.|+|||||+++|-|+++|.+++.++.....+. + ..+..+++.++.+|..|..
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~-------------- 155 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAA-------------- 155 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHH--------------
Confidence 3445569999999999999999999999999998877654411 1 1223489999999998852
Q ss_pred CCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhC
Q 013776 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (436)
Q Consensus 273 ~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (436)
...+++.|.-|+..++-..-.+ +..+||||-||+..|||.|++.++++...
T Consensus 156 s~lQyyVPeg~Wk~Fr~~~~pl-----n~reqhDA~eFf~sLld~~De~LKklg~p------------------------ 206 (944)
T KOG1866|consen 156 SQLQYYVPEGFWKQFRLWGEPL-----NLREQHDALEFFNSLLDSLDEALKKLGHP------------------------ 206 (944)
T ss_pred HhhhhhcchhHHHHhhccCCcc-----chHhhhhHHHHHHHHHHHHHHHHHHhCCc------------------------
Confidence 3477899999999998775433 67899999999999999999999876532
Q ss_pred CCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cc
Q 013776 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR 428 (436)
Q Consensus 353 ~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~ 428 (436)
..+..-|+|.+..+-.|. |-|.....|+|..|+|+|. ..+|+++|++|.+.|.++| |+
T Consensus 207 ---------------~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~---~~nLeesLeqfv~gevlEG~nAYh 268 (944)
T KOG1866|consen 207 ---------------QLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR---HQNLEESLEQFVKGEVLEGANAYH 268 (944)
T ss_pred ---------------HHHHHHhcCccchhhhhccCCcccCccccceeeeeecc---cchHHHHHHHHHHHHHhcCcchhh
Confidence 235788999999999997 9999999999999999993 6899999999999999999 99
Q ss_pred cCCCCCC
Q 013776 429 TSSTGNV 435 (436)
Q Consensus 429 C~kC~k~ 435 (436)
|+||+++
T Consensus 269 CeKCdeK 275 (944)
T KOG1866|consen 269 CEKCDEK 275 (944)
T ss_pred hhhhhhh
Confidence 9999875
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.84 E-value=9.5e-21 Score=181.11 Aligned_cols=149 Identities=29% Similarity=0.491 Sum_probs=113.9
Q ss_pred CcccccCCCcchhHHHHHHHhCChhHHHHHHhh------hccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 013776 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQEL------RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (436)
Q Consensus 201 p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~------~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (436)
|+||.|.||||||||+||+|+++|+|++++... ..........++.++|+.++..|+... ..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~ 68 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN------------SS 68 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC------------SS
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc------------cc
Confidence 589999999999999999999999999999976 222333445679999999999998441 34
Q ss_pred CCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCC
Q 013776 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (436)
Q Consensus 275 ~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 354 (436)
...+.|..++.+++...+.| ..+.||||+|||.+||+.|++++..... ...|.....
T Consensus 69 ~~~i~~~~~~~~l~~~~~~~-----~~~~qqDa~E~l~~ll~~l~~~~~~~~~-----------------~~~~~~~~~- 125 (269)
T PF00443_consen 69 DSSISPSDFINALSSINPSF-----SNGEQQDAHEFLSFLLDWLDEEFNSSFK-----------------RKSWKNTNS- 125 (269)
T ss_dssp SSEEHCHHHHHHHHHHCGGG-----GSSSTEEHHHHHHHHHHHHHHHHTSCSS-----------------HHHHHHHHC-
T ss_pred ccceeecccccccccccccc-----ccccccchhhhhcccccccchhhccccc-----------------ccccccccc-
Confidence 78899999999999986654 7899999999999999999999865331 111211111
Q ss_pred CCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeee
Q 013776 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQ 394 (436)
Q Consensus 355 n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E 394 (436)
...+++.++|.+++.+.+.|. |+.....+.
T Consensus 126 ----------~~~~~~~~~f~~~~~~~~~c~~c~~~~~~~~ 156 (269)
T PF00443_consen 126 ----------SEDSLISDLFGGQFESSIKCSSCKNSQSSIS 156 (269)
T ss_dssp ----------CEESHHHHHH-EEEEEEEEETTTTCEEEEEE
T ss_pred ----------ccccccccccccccccccccccccccccccc
Confidence 113667999999999999996 987754443
No 24
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3e-21 Score=219.97 Aligned_cols=176 Identities=25% Similarity=0.355 Sum_probs=148.6
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhc-cCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~-~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (436)
..|+||.|+||||||||+||+|++++.||+.+..... .........+..+|+.||..|+.. ..++
T Consensus 168 g~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s--------------~~k~ 233 (1093)
T KOG1863|consen 168 GFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMS--------------KRKY 233 (1093)
T ss_pred CCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhc--------------CCCC
Confidence 4569999999999999999999999999999998873 111233446899999999999733 3569
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCc
Q 013776 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (436)
Q Consensus 278 isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S 357 (436)
|.|..+...+++.. ....+|||+|||++.|+|.|++.+.....
T Consensus 234 Vdt~~~~~~~~~~~-------~~~~~QqDvqEf~~~l~d~LE~~~~~~~~------------------------------ 276 (1093)
T KOG1863|consen 234 VDTSELTKSLGWDS-------NDSFEQQDVQEFLTKLLDWLEDSMIDAKV------------------------------ 276 (1093)
T ss_pred cCchhhhhhhhccc-------ccHHhhhhHHHHHHHHHHHHHhhccchhh------------------------------
Confidence 99999999998853 24579999999999999999998765331
Q ss_pred ccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc--cccCCCCC
Q 013776 358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--YRTSSTGN 434 (436)
Q Consensus 358 ~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg--y~C~kC~k 434 (436)
...|.++|.|.+.+.|.|. |...+.+.|.|+++.|++ .+..+|.++|+.|+..|.++| -.|..|+.
T Consensus 277 ---------~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~--~g~~nl~~sf~~y~~~E~l~gdn~~~~~~~~ 345 (1093)
T KOG1863|consen 277 ---------ENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNG--KGVKNLEDSLHLYFEAEILLGDNKYDAECHG 345 (1093)
T ss_pred ---------hhhhhhhhcCCcceEEEEEeeeeeccccccccCccccc--cchhhHHHHHHHhhhHHHhcCCccccccccc
Confidence 1336899999999999995 888899999999999999 778899999999999999998 45899987
Q ss_pred CC
Q 013776 435 VQ 436 (436)
Q Consensus 435 ~~ 436 (436)
.|
T Consensus 346 ~~ 347 (1093)
T KOG1863|consen 346 LQ 347 (1093)
T ss_pred hh
Confidence 64
No 25
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.4e-21 Score=211.07 Aligned_cols=178 Identities=22% Similarity=0.391 Sum_probs=154.5
Q ss_pred CccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc------CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 013776 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR------DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (436)
Q Consensus 198 ~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~------~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~ 271 (436)
..+.+||.|+|||||||+.+|||.++++++++++..... +.......+..++..++..+|...
T Consensus 243 ~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~----------- 311 (842)
T KOG1870|consen 243 ERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN----------- 311 (842)
T ss_pred cccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC-----------
Confidence 345699999999999999999999999999998765433 334556778899999999999542
Q ss_pred cCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCC-ccCCCcccccchhhhhhHhh
Q 013776 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST-SINGANTALVSLAEEDEWET 350 (436)
Q Consensus 272 ~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~-~~~~~~~~~~~~~~~~~w~~ 350 (436)
...|.|..++..+..+.+.| .|+.|||.|||+.||||.||+++.+...+++ ...+..++++...+.+.|..
T Consensus 312 ---~~~v~~~~~~~~~~~~a~~~-----~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~ 383 (842)
T KOG1870|consen 312 ---KSAVAPTSFRTSLASFASEF-----SGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDY 383 (842)
T ss_pred ---ccccCchhhhhhhhhccccc-----cCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHh
Confidence 24799999999999987765 8999999999999999999999999988865 44567777888899999999
Q ss_pred hCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCC
Q 013776 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS 405 (436)
Q Consensus 351 ~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~ 405 (436)
+..++++++ .++|.|++++++.|. |.++++++++|.+|+||+|.
T Consensus 384 ~~~~~~s~i-----------~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~ 428 (842)
T KOG1870|consen 384 HLKRNRSVI-----------VDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPG 428 (842)
T ss_pred hhhhcccee-----------eeeecceecccccCccCCCceEEeeccccccccCCC
Confidence 999998764 899999999999996 99999999999999999984
No 26
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.83 E-value=4.8e-20 Score=182.94 Aligned_cols=188 Identities=19% Similarity=0.195 Sum_probs=152.8
Q ss_pred cccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChH
Q 013776 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 281 (436)
Q Consensus 202 ~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~ 281 (436)
.||.|.+++||+||+||+|+++|++++.++.+. . .....||+|+|+.||.+|... ..+..+.+.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~-c~~e~cL~cELgfLf~ml~~~-------------~~g~~cq~s 64 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E-CPKEFCLLCELGFLFDMLDSK-------------AKGINCQAS 64 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C-CCccccHHHHHHHHHHHhhhh-------------cCCCcChHH
Confidence 499999999999999999999999999999888 2 445789999999999999721 236778888
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccccc
Q 013776 282 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 361 (436)
Q Consensus 282 ~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r 361 (436)
.|.++++..... ..-+.|+|.|+|++|||++|+.++......... . ...
T Consensus 65 Nflr~l~~~~~a-----~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~---------------------~-----~~~ 113 (295)
T PF13423_consen 65 NFLRALSWIPEA-----AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH---------------------T-----SEN 113 (295)
T ss_pred HHHHHHhcCHHH-----HhcchhHHHHHHHHHHHHHHhHHHHhcCccccc---------------------c-----ccc
Confidence 999999876321 134569999999999999999998865532110 0 000
Q ss_pred ccccCCCccccCceEEEEEEEEe-CCCCeeeeeecceeEEEecCCC-CCCCHHHHHHhccCccccCccccCCCCCCC
Q 013776 362 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNVQ 436 (436)
Q Consensus 362 ~~~~~~s~I~~lF~G~l~s~I~C-~C~~~S~~~E~F~~LsL~Ip~~-~~~sLed~L~~f~~~E~Legy~C~kC~k~~ 436 (436)
......++|.++|+......++| .|++.+.+.+....+.|..|.. ...++.++|+.++..|.....+|++|++++
T Consensus 114 ~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~ 190 (295)
T PF13423_consen 114 SSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKYQ 190 (295)
T ss_pred ccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccccccccccccc
Confidence 01112367899999999999999 5999999999999999999873 458999999999999999999999999874
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.1e-21 Score=203.74 Aligned_cols=171 Identities=22% Similarity=0.301 Sum_probs=145.1
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCcc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~i 278 (436)
.+-+||+|+|.||||||+||+|+.+..||+.+......... ....++.+|+++|..|+. ...++
T Consensus 191 TGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~-grdSValaLQr~Fynlq~---------------~~~Pv 254 (1089)
T COG5077 191 TGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR-GRDSVALALQRLFYNLQT---------------GEEPV 254 (1089)
T ss_pred eeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC-ccchHHHHHHHHHHHHhc---------------cCCCc
Confidence 46699999999999999999999999999999998876533 355788999999999973 46789
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcc
Q 013776 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (436)
Q Consensus 279 sP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~ 358 (436)
+...|.+.+++.. +....|||.|||.+.|.|.|+..+.....
T Consensus 255 dTteltrsfgWds-------~dsf~QHDiqEfnrVl~DnLEksmrgt~V------------------------------- 296 (1089)
T COG5077 255 DTTELTRSFGWDS-------DDSFMQHDIQEFNRVLQDNLEKSMRGTVV------------------------------- 296 (1089)
T ss_pred chHHhhhhcCccc-------chHHHHHhHHHHHHHHHHHHHHhhcCChh-------------------------------
Confidence 9999998877642 35679999999999999999986643221
Q ss_pred cccccccCCCccccCceEEEEEEEEe-CCCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCccccCCCC
Q 013776 359 VTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG 433 (436)
Q Consensus 359 ~~r~~~~~~s~I~~lF~G~l~s~I~C-~C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Legy~C~kC~ 433 (436)
...++.+|-|++++.+.| .-.++|.+.|.||++.|.+ ++..+|++.++.|++.|.++|..|-.|.
T Consensus 297 --------Enaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNv--K~~knLqeSfr~yIqvE~l~GdN~Y~ae 362 (1089)
T COG5077 297 --------ENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNV--KGMKNLQESFRRYIQVETLDGDNRYNAE 362 (1089)
T ss_pred --------hhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcc--cchhhHHHHHHHhhhheeccCCcccccc
Confidence 234689999999999999 4899999999999999999 8899999999999999999994444443
No 28
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-20 Score=198.53 Aligned_cols=177 Identities=22% Similarity=0.289 Sum_probs=125.1
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCC-C-----------------CCCCcHHHHHHHHHHhcCCCC
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI-P-----------------KAGYPTLTAFVGFVSDFDTPS 260 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~-~-----------------~~~~~l~~~L~~L~~~l~~~~ 260 (436)
...+||.|+|||||+|||||+|+.+|.|+..|.+...... - ....++..+|..|..+.
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~---- 278 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMS---- 278 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhh----
Confidence 4568999999999999999999999999999988765421 1 11234444554433332
Q ss_pred CCCCccccccccCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccC-CCcccc
Q 013776 261 GGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-GANTAL 339 (436)
Q Consensus 261 ~~~~~~~~~~~~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~-~~~~~~ 339 (436)
......|.|..|...+...+|+| .||+||||||+|++|||.|..|..+..++....+ +.....
T Consensus 279 -----------e~~ksv~~Pr~lF~~~C~k~pqF-----~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~ 342 (877)
T KOG1873|consen 279 -----------ETTKSVITPRTLFGQFCSKAPQF-----RGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSS 342 (877)
T ss_pred -----------hccCCccCHHHHHHHHHHhCCcc-----cccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccc
Confidence 24577999999999999999997 8999999999999999999988877665542111 111111
Q ss_pred cchhhhh--hHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCC
Q 013776 340 VSLAEED--EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS 405 (436)
Q Consensus 340 ~~~~~~~--~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~ 405 (436)
..+.... ..+.|.+. .....++...|.|-+.+++.|. |. ++.+.+.|.+.+|||-.
T Consensus 343 l~scle~~q~sKvYe~f---------~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~ 401 (877)
T KOG1873|consen 343 LVSCLECGQKSKVYEPF---------KDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLP 401 (877)
T ss_pred hhhhhhccchhhccccc---------ccCCcccccccCCCcccchhhhccc-eeccchhhccccccccc
Confidence 1111111 11222221 1123556789999999999997 77 78888999999999854
No 29
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-19 Score=179.95 Aligned_cols=228 Identities=37% Similarity=0.531 Sum_probs=169.3
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC--CCCCCCcHHHHHHHHHHhcCCCCCCC------Ccccc--
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGS------SKKKN-- 268 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~--~~~~~~~l~~~L~~L~~~l~~~~~~~------~~~~~-- 268 (436)
+.|+|++|-||-|||||+||+|+.|++|.+.+....... ......+++.++..+...+......+ ++...
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 679999999999999999999999999998876655221 12345688888888888876333211 00000
Q ss_pred ------ccccCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCC-------
Q 013776 269 ------ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGA------- 335 (436)
Q Consensus 269 ------~~~~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~------- 335 (436)
.+......++-|..+.-.+... ++| .+...|+|.||.|||.++||.||||+.++.+.....++.
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~--e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i 182 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTM-SRF--ESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLI 182 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccC-Cch--hhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccc
Confidence 0111233345554444333332 221 234668999999999999999999998665432211111
Q ss_pred ---------cccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeCCCCeeeeeecceeEEEecCCC
Q 013776 336 ---------NTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406 (436)
Q Consensus 336 ---------~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~C~~~S~~~E~F~~LsL~Ip~~ 406 (436)
........+..+|...+++++..+.|..++..+||+++|+|++++.+.-...++|.+.+||..|.|+|..+
T Consensus 183 ~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq~~ 262 (420)
T KOG1871|consen 183 NNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQSE 262 (420)
T ss_pred cccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeeecc
Confidence 11112234567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhccCccccCcccc
Q 013776 407 AVHTIEDALRLFSAPENLEGYRT 429 (436)
Q Consensus 407 ~~~sLed~L~~f~~~E~Legy~C 429 (436)
+..+++++|..+...|.+.+|.-
T Consensus 263 ~i~sv~~ales~~~re~lp~~st 285 (420)
T KOG1871|consen 263 KIHSVQDALESLVARESLPGYST 285 (420)
T ss_pred ccCCHHHHhhccChhhcccceec
Confidence 99999999999999999988654
No 30
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.2e-20 Score=193.18 Aligned_cols=193 Identities=27% Similarity=0.359 Sum_probs=153.1
Q ss_pred CccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCC--CCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCC
Q 013776 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (436)
Q Consensus 198 ~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~--~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~ 275 (436)
....+||+|+|+|||||++||+|.+.|..+...+...+...+ ....++.+++.+++..||... ..
T Consensus 158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~-------------~~ 224 (492)
T KOG1867|consen 158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH-------------NR 224 (492)
T ss_pred eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC-------------CC
Confidence 456799999999999999999999999888777665544222 225689999999999998543 17
Q ss_pred CccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCC
Q 013776 276 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKN 355 (436)
Q Consensus 276 ~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n 355 (436)
.+++|..++..+++..|.+ .++.|||||||+..+++.+|.+.. ...+..
T Consensus 225 ~~~sp~~~l~~~~k~~~~~-----~g~~Qqda~eF~~~~~~~~~~~~~-~~~k~~------------------------- 273 (492)
T KOG1867|consen 225 TPYSPFELLNLVWKHSPNL-----AGYEQQDAHEFLIALLDRLHREKD-DCGKSL------------------------- 273 (492)
T ss_pred CCcChHHHHHHHHHhCccc-----ccccccchHHHHHHhccccccccc-cccccc-------------------------
Confidence 8999999999999998876 789999999999999999999871 111100
Q ss_pred CcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCC--------CCCHHHHHHhccCccccC-
Q 013776 356 KSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA--------VHTIEDALRLFSAPENLE- 425 (436)
Q Consensus 356 ~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~--------~~sLed~L~~f~~~E~Le- 425 (436)
+..+......+++..+|.|++.+.++|. |...|.++++|++|+|+||..- ..++.+||+.|...|.+.
T Consensus 274 --~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~ 351 (492)
T KOG1867|consen 274 --IASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGK 351 (492)
T ss_pred --ccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCc
Confidence 0000011235788999999999999996 9999999999999999998521 267999999999998764
Q ss_pred --ccccCCCCCCC
Q 013776 426 --GYRTSSTGNVQ 436 (436)
Q Consensus 426 --gy~C~kC~k~~ 436 (436)
.+.|..|+.+|
T Consensus 352 ~~~~~c~~c~~~~ 364 (492)
T KOG1867|consen 352 DSKYKCSSCKSKQ 364 (492)
T ss_pred ccccccCCccccc
Confidence 38899998764
No 31
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.77 E-value=1.2e-18 Score=166.70 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=76.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEE
Q 013776 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (436)
Q Consensus 303 ~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I 382 (436)
.|||||||++.|||.|++++........ ......++|.++|+|++.+++
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~-------------------------------~~~~~~~~i~~lF~G~~~~~~ 69 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAIS-------------------------------PGEKSKNPMVQLFYGTFLTEG 69 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-------------------------------ccccccchHhhceEEEEEEEE
Confidence 5899999999999999999864321000 000123678999999999887
Q ss_pred EeCCCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCccccCCCC
Q 013776 383 KAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG 433 (436)
Q Consensus 383 ~C~C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Legy~C~kC~ 433 (436)
.| |+..+.+.|+|++|+|+| ++..+|++||+.|+.+|.+++..|.+|.
T Consensus 70 ~~-~~~~s~~~E~F~~L~l~i--~~~~~L~e~L~~~~~ee~l~~~~~~~~~ 117 (228)
T cd02665 70 VL-EGKPFCNCETFGQYPLQV--NGYGNLHECLEAAMFEGEVELLPSDHSV 117 (228)
T ss_pred EE-CCCcccccCccEEEEEEE--CCCCCHHHHHHHhhhhcccccccccchh
Confidence 77 566789999999999999 5678999999999999999986665543
No 32
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.75 E-value=2.7e-18 Score=161.43 Aligned_cols=100 Identities=34% Similarity=0.515 Sum_probs=83.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEE
Q 013776 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (436)
Q Consensus 303 ~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I 382 (436)
.||||+|||.++|+.|+.++........ ......++|.++|.|.+.+.+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~-------------------------------~~~~~~~~i~~~F~~~~~~~~ 69 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTS-------------------------------DSSSLKSLIHDLFGGKLESTI 69 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------------ccccCCchhhhhcccEEeeEE
Confidence 7899999999999999999875432100 001113568999999999999
Q ss_pred EeC-CCCeeeeeecceeEEEecCCCC--CCCHHHHHHhccCccccCccccCCCC
Q 013776 383 KAQ-GNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEGYRTSSTG 433 (436)
Q Consensus 383 ~C~-C~~~S~~~E~F~~LsL~Ip~~~--~~sLed~L~~f~~~E~Legy~C~kC~ 433 (436)
.|. |+..+.+.+.+..++|++|... ..+|+++|+.++.+|.++++.|..|+
T Consensus 70 ~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~c~ 123 (255)
T cd02257 70 VCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCE 123 (255)
T ss_pred ECCCCCCCccCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCCCCcccCC
Confidence 996 9888888889999999998754 78999999999999999999999997
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.67 E-value=2.5e-16 Score=154.53 Aligned_cols=126 Identities=18% Similarity=0.125 Sum_probs=102.9
Q ss_pred cccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChH
Q 013776 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 281 (436)
Q Consensus 202 ~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~ 281 (436)
+||.|+|.|||+||+||+|+++|+||++ +.+. ...+....|++|+|+.||..
T Consensus 16 ~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~~~-~~~~~~~~~l~~el~~lfs~-------------------------- 67 (268)
T cd02672 16 AGLENHITNSYCNSLLQLLYFIPPFRNF-TAII-LVACPKESCLLCELGYLFST-------------------------- 67 (268)
T ss_pred cccccCCccchHHHHHHHHHhcHHHHHH-HHhh-cccCCcCccHHHHHHHHHHH--------------------------
Confidence 8999999999999999999999999998 3332 22345578999999999811
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccccc
Q 013776 282 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 361 (436)
Q Consensus 282 ~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r 361 (436)
=.|-|-++|+++++.+...
T Consensus 68 ------------------------~iq~F~~fll~~i~~~~~~------------------------------------- 86 (268)
T cd02672 68 ------------------------LIQNFTRFLLETISQDQLG------------------------------------- 86 (268)
T ss_pred ------------------------HHHHHHHHHHHHHHHHhcc-------------------------------------
Confidence 0245889999999966421
Q ss_pred ccccCCCccccCceEEEEEEEEeCCCCeeeeeecceeEEEecCCC---CCCCHHHHHHhccCccccCccccCCCCCCC
Q 013776 362 TQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE---AVHTIEDALRLFSAPENLEGYRTSSTGNVQ 436 (436)
Q Consensus 362 ~~~~~~s~I~~lF~G~l~s~I~C~C~~~S~~~E~F~~LsL~Ip~~---~~~sLed~L~~f~~~E~Legy~C~kC~k~~ 436 (436)
.+ ..|++++.+.++|++|+||+|.. ...+|++||+.|+++|.+..++|++|++.|
T Consensus 87 -----------~~---------~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~ 144 (268)
T cd02672 87 -----------TP---------FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQ 144 (268)
T ss_pred -----------cC---------CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcccccccccCccc
Confidence 00 34899999999999999999864 357999999999999999889999999864
No 34
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.7e-17 Score=169.14 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=125.3
Q ss_pred cCccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCC
Q 013776 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (436)
Q Consensus 197 ~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~ 276 (436)
.+-+.+||+|...|||+|+.+|+|+.+|.|+..+.... ..
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~----------------------------------------~~ 122 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE----------------------------------------ND 122 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC----------------------------------------cc
Confidence 33456899999999999999999999999998776221 23
Q ss_pred ccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCC
Q 013776 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (436)
Q Consensus 277 ~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~ 356 (436)
.+-...+.+.+++-.. ..++|||.||+-+.++|+|+-..+....
T Consensus 123 ~~et~dlt~sfgw~s~-------ea~~qhdiqelcr~mfdalehk~k~t~~----------------------------- 166 (1203)
T KOG4598|consen 123 SLETKDLTQSFGWTSN-------EAYDQHDVQELCRLMFDALEHKWKGTEH----------------------------- 166 (1203)
T ss_pred cccchhhHhhcCCCcc-------hhhhhhhHHHHHHHHHHHHHhhhcCchH-----------------------------
Confidence 3444556666655432 4689999999999999999876653221
Q ss_pred cccccccccCCCccccCceEEEEEEEEe-CCCCeeeeeecceeEEEecCCCC----CCCHHHHHHhccCccccCc---cc
Q 013776 357 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEG---YR 428 (436)
Q Consensus 357 S~~~r~~~~~~s~I~~lF~G~l~s~I~C-~C~~~S~~~E~F~~LsL~Ip~~~----~~sLed~L~~f~~~E~Leg---y~ 428 (436)
...|++++.|++..-+.| .|+.++.+.+.|++|+|++.+=+ ..+++++|..|.+||.|+| |-
T Consensus 167 ----------~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ 236 (1203)
T KOG4598|consen 167 ----------EKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYM 236 (1203)
T ss_pred ----------HHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHH
Confidence 145799999999999999 59999999999999999996532 4799999999999999999 99
Q ss_pred cCCCCCCC
Q 013776 429 TSSTGNVQ 436 (436)
Q Consensus 429 C~kC~k~~ 436 (436)
|++|++.|
T Consensus 237 ce~ck~k~ 244 (1203)
T KOG4598|consen 237 CENCKSKQ 244 (1203)
T ss_pred Hhhhhhhh
Confidence 99999875
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.7e-14 Score=149.20 Aligned_cols=212 Identities=22% Similarity=0.287 Sum_probs=147.8
Q ss_pred cCcccccCCCcchhH--HHHHHHhCChhHHHHHHhhhccCCC--CCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCC
Q 013776 200 LPRGLINSGNLCFLN--ATLQALMSCSPFVQLLQELRTRDIP--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (436)
Q Consensus 200 ~p~GL~N~GNTCYmN--SvLQ~L~~tp~f~~~Ll~~~~~~~~--~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~ 275 (436)
...|..|.+++|+.| ++.|.+..+.+++............ .....+...+..++...-. .....
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~ 298 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISS------------RKKLV 298 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhh------------hcccc
Confidence 457999999999999 9999999999988554433322111 1122233333333322110 11234
Q ss_pred CccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcc-cccchhhhhhHhhhCCC
Q 013776 276 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANT-ALVSLAEEDEWETVGPK 354 (436)
Q Consensus 276 ~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~~ 354 (436)
..+.|..++..+++.... |..+.|||||||+.++++.+++.+............... ..........|..-+
T Consensus 299 ~~i~p~~~~~~~~~~~~~-----f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~-- 371 (587)
T KOG1864|consen 299 GRISPTRFISDLIKENEL-----FTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKG-- 371 (587)
T ss_pred cccCcchhhhhhhhcCCc-----cCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccc--
Confidence 578999999999998555 489999999999999999999988765533221111100 000011111121111
Q ss_pred CCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccC
Q 013776 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTS 430 (436)
Q Consensus 355 n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~ 430 (436)
.......++|..+|.|++..+.+|. |...+.+.+.|.|++++++.+...++.+||+.|..+|.+.| |.|+
T Consensus 372 ------~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~ 445 (587)
T KOG1864|consen 372 ------HHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCE 445 (587)
T ss_pred ------cccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCccccc
Confidence 1223335789999999999999995 99999999999999999987678999999999999999998 8999
Q ss_pred CCCCCC
Q 013776 431 STGNVQ 436 (436)
Q Consensus 431 kC~k~~ 436 (436)
+|..+|
T Consensus 446 ~c~s~q 451 (587)
T KOG1864|consen 446 NCCSLQ 451 (587)
T ss_pred ccCchh
Confidence 998765
No 36
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.43 E-value=8.2e-13 Score=131.09 Aligned_cols=169 Identities=22% Similarity=0.272 Sum_probs=133.9
Q ss_pred cCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccC
Q 013776 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (436)
Q Consensus 200 ~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (436)
+.+||.|+-++=|+|++||+|.+.+++|+|++.... .-.....+...|+.+++.+|.+. .....++
T Consensus 133 G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r------------~fk~hvS 198 (442)
T KOG2026|consen 133 GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPR------------NFKGHVS 198 (442)
T ss_pred eeeccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChh------------hhcccCC
Confidence 458999999999999999999999999999986632 12334578899999999999665 5678999
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCccc
Q 013776 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (436)
Q Consensus 280 P~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~ 359 (436)
|..+++++.... .+.|..++|-|+-|||.|||+.||..+....+.
T Consensus 199 phe~lqaV~~~s----~k~f~i~~q~DpveFlswllntlhs~l~~~k~~------------------------------- 243 (442)
T KOG2026|consen 199 PHEFLQAVMKLS----KKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKA------------------------------- 243 (442)
T ss_pred HHHHHHHHHHHh----hhheecCCCCCHHHHHHHHHHHHHHHhCCCCCc-------------------------------
Confidence 999999987763 345788999999999999999999998654411
Q ss_pred ccccccCCCccccCceEEEEEEEEeC-----CCCeeeeeecceeEEEecCCCC------------CCCHHHHHHhccCcc
Q 013776 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-----GNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPE 422 (436)
Q Consensus 360 ~r~~~~~~s~I~~lF~G~l~s~I~C~-----C~~~S~~~E~F~~LsL~Ip~~~------------~~sLed~L~~f~~~E 422 (436)
.++|++.|+|.++..-.-. -....+..-+|+.|+|++|+.. -+.|-++|..|-...
T Consensus 244 -------~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t 316 (442)
T KOG2026|consen 244 -------SSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGET 316 (442)
T ss_pred -------hhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCce
Confidence 1567999999998654432 2334666789999999999632 267999999987655
Q ss_pred cc
Q 013776 423 NL 424 (436)
Q Consensus 423 ~L 424 (436)
.-
T Consensus 317 ~~ 318 (442)
T KOG2026|consen 317 VT 318 (442)
T ss_pred ee
Confidence 43
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-13 Score=136.28 Aligned_cols=375 Identities=21% Similarity=0.143 Sum_probs=242.3
Q ss_pred CCCceEEEEeccchhhhhhhhcccCCCCCCCCCCccccCCcccccccccccceeeccccccCCCCCCCCCccCCCceeec
Q 013776 1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQ 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (436)
|+.+++++||+|+|.|||+++.+.+ -. .|.-+-+--.-+++|+|+...+.+......+. ...++|.++ +
T Consensus 1 ~~~~~~~~~~~~~e~~t~s~~~p~~-i~-------Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~--i~~~~~~~~-~ 69 (420)
T KOG1871|consen 1 MSEKKVFVIGSFLENETRSFFEPVP-ID-------PRGSINKCNICFMNSILQALLYCSPFYNLLEL--IKRADGTVK-E 69 (420)
T ss_pred CCccchhhhhHhhhcccccccCccc-cC-------CccccccceeEeeHHHHHHHHhCccHHHHHHh--hhhhcCcee-c
Confidence 7889999999999999999997766 22 12223334477899999999988877766555 337888887 6
Q ss_pred cC----cccCCcccc---cccCC-CCCCCCCCccccccCCccccCCCC-CCccCCccccCCCCCCccccccCCCCCCCCC
Q 013776 81 PS----TLLKKDDKV---KSVGA-SNDHDLGAVGCPKENGHIKNSTNG-PALSNGVNHLKADGIDFSSFHQNAGGHANPS 151 (436)
Q Consensus 81 ~~----~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (436)
.+ ++.++.... +.+++ +++|.|.+|.+.. .++.+ .+..+|+ ++.++..-+.-+.++.++.....
T Consensus 70 ~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~------~~ses~~~d~~~d-av~~d~~~~~l~t~~~~e~~~~g 142 (420)
T KOG1871|consen 70 GSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVV------EKSESNKSDLQGD-AVKPDPIYLDLLTMSRFESLQVG 142 (420)
T ss_pred ccchhHHHHHHHHhhccccchhhhhhhccCCcccccc------chhhhhhhcccCc-cccCCchhhhcccCCchhhcccc
Confidence 33 333343333 56666 9999999999877 34444 6678888 89999999999988887643322
Q ss_pred CccccccccCCccCCc--ccccccccCCCCCCCCCCccCCCCCcccccCccCcccccCCCcchhHHHHHHHhCChhHHHH
Q 013776 152 PISKFHVLCDGNIDGR--DQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQL 229 (436)
Q Consensus 152 ~~~~~~~~~~e~~~~~--~~~~~~~~s~g~~~~~~~~~~p~~~~~~~~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~ 229 (436)
++.+.|+|-.- |+..-. ....++....+.+...|+|+.|.||-|+.++..|.+.+..++...
T Consensus 143 -----~qedAeefl~~~ld~lhee-----------~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~ 206 (420)
T KOG1871|consen 143 -----KQEDAEEFLLDNLDFLHEE-----------SSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQL 206 (420)
T ss_pred -----ccccHHHHHHHHHhhhhHH-----------HHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhh
Confidence 22233333220 111111 113344455555666789999999999999999999999999999
Q ss_pred HHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChHHHH----------HHHHhhCCCCCCCC-
Q 013776 230 LQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFE----------AVLKNFTPDVPNSI- 298 (436)
Q Consensus 230 Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~~~----------~~l~~~~p~f~n~~- 298 (436)
+.......++.........+.++|.......-..... .-....+++.|..|- .++..+.++-....
T Consensus 207 ~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~n---keS~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp~~ 283 (420)
T KOG1871|consen 207 LGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSN---KESATLQPFFTLQLDIQSEKIHSVQDALESLVARESLPGY 283 (420)
T ss_pred cCCcccCccCCCCCcccCcHHHhhccccccceecccc---ccccccCccceeeeeeeccccCCHHHHhhccChhhcccce
Confidence 8877666555555444445555554432221000000 001222333332222 22333222110101
Q ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccc
Q 013776 299 -------SGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALS 371 (436)
Q Consensus 299 -------f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~ 371 (436)
-....|.++++|..+|+..|+..+-...+.-. .....|+...+.+.+...+. ...++-+
T Consensus 284 st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~------------k~~K~i~~~~~l~i~~~~~s-~gvk~~~- 349 (420)
T KOG1871|consen 284 STKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGAR------------KLGKKIEYPWTLKISKNCFS-QGLKIRI- 349 (420)
T ss_pred ecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchh------------hhchhhhccceeeechhhhc-cccchhh-
Confidence 12357999999999999999999876432211 12344555555554444433 2222333
Q ss_pred cCceEEEEEEEEeCCCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc
Q 013776 372 DIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG 426 (436)
Q Consensus 372 ~lF~G~l~s~I~C~C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg 426 (436)
-+|++.+++...-.....+.+..+++...+.+...+..-|+|++-.+.+.+.+++
T Consensus 350 ~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~ 404 (420)
T KOG1871|consen 350 LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEK 404 (420)
T ss_pred hccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhcc
Confidence 6789999998887777889999999999999987788899999999998888876
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.1e-11 Score=124.36 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=122.2
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC-C---CCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-I---PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~-~---~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (436)
..|+||.|+|||||||+.+|||...|+++..+..+.... . -.....+..+++.+|..|. ..
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~---------------~~ 167 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLC---------------EK 167 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhh---------------cc
Confidence 467999999999999999999999999987776554211 1 1112356778888888875 23
Q ss_pred CCccChHHHHHHHHhhCCCCCC-CCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCC
Q 013776 275 GRPFSPSMFEAVLKNFTPDVPN-SISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGP 353 (436)
Q Consensus 275 ~~~isP~~~~~~l~~~~p~f~n-~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 353 (436)
..+.|..+.+.+.+..|+|.. .....+.||||.|++..+|-.++.-+......+
T Consensus 168 -~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~------------------------ 222 (473)
T KOG1872|consen 168 -GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP------------------------ 222 (473)
T ss_pred -CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc------------------------
Confidence 889999999999999998832 123558999999999999999998664322110
Q ss_pred CCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeee--eecceeEEEecCCCCCCCHHHHHHhcc
Q 013776 354 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASAT--VQPFLLLHLDIYSEAVHTIEDALRLFS 419 (436)
Q Consensus 354 ~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~--~E~F~~LsL~Ip~~~~~sLed~L~~f~ 419 (436)
+ ....|..+|++.+..+..|. ....... .|.|+.|+.-| .+.++.+...|+.=+
T Consensus 223 ~-----------~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i-~~~~~~~k~Gl~~~~ 279 (473)
T KOG1872|consen 223 C-----------LEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCII-NKTVHDMRFGLKSGL 279 (473)
T ss_pred c-----------hhHHHHHhhccccccceeeccCcccccccccccccccceEE-eeeechhhhhhhhhh
Confidence 0 01346788999999999995 4333222 78999999888 344556666665544
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.94 E-value=4.7e-10 Score=121.27 Aligned_cols=213 Identities=13% Similarity=0.120 Sum_probs=131.3
Q ss_pred ccccccCCccCCcccccccccCCCCCCCCCCccCCCCCcccccCccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhh
Q 013776 155 KFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR 234 (436)
Q Consensus 155 ~~~~~~~e~~~~~~~~~~~~~s~g~~~~~~~~~~p~~~~~~~~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~ 234 (436)
|......|+|++++||.+.+ +||.-.+-+-|+||+||.|+++|++|.+++++.
T Consensus 480 kysk~G~edFDF~~~NqT~y---------------------------aGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~ 532 (1118)
T KOG1275|consen 480 KYSKFGTEDFDFQDYNQTTY---------------------------AGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI 532 (1118)
T ss_pred eecccccccCCCccccccee---------------------------eccCCCCchHHHHHHHHHHHhccHHHHHHHcCc
Confidence 44445678888888888887 799999999999999999999999999999883
Q ss_pred ccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCccChHHHHHHHHhhCCCCC-CCCCCCC----------C
Q 013776 235 TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVP-NSISGRP----------R 303 (436)
Q Consensus 235 ~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~~~~~l~~~~p~f~-n~~f~g~----------~ 303 (436)
+....||+|+|+.||.+|... .+.+...+.|.++++.....-. ...+... -
T Consensus 533 ----C~~e~CL~CELGFLF~Ml~~S--------------~G~~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~l 594 (1118)
T KOG1275|consen 533 ----CTKEFCLLCELGFLFTMLDSS--------------TGDPCQANNFLRAFRTNPEASALGLVLSDTQISGTVNDDVL 594 (1118)
T ss_pred ----cchhHHHHHHHHHHHHHHhhh--------------cCCccchhHHHHHHhhChHhhhhcccccchhhccccchHHH
Confidence 455789999999999999743 2446666777777765421100 0000000 0
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEEE
Q 013776 304 QEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVK 383 (436)
Q Consensus 304 QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~ 383 (436)
-|||..|.....+ .|.++.+...-. .....++.+.. ......+.++|+-.+....+
T Consensus 595 iq~~~~~~~set~-~~~d~~~~~~~~-------------------~s~~~~~~~~~----vn~~~~l~q~F~~~~e~~~~ 650 (1118)
T KOG1275|consen 595 IQDAEGFISSETS-RHLDCQDCRGLQ-------------------QSESVDGESFK----VNYAPVLQQSFCQEIEKSLR 650 (1118)
T ss_pred hhhhhhccchhhh-hhhhHHHhhhhh-------------------hhhcccCceee----ecchhHHHHHhhhHHHHhhh
Confidence 1222222111111 111111110000 00000000000 01124678999999999999
Q ss_pred e-CCCCeeeeeecceeEEEecCCCC-------CCCHHHHHHhccCccccCccccCCCCCCC
Q 013776 384 A-QGNKASATVQPFLLLHLDIYSEA-------VHTIEDALRLFSAPENLEGYRTSSTGNVQ 436 (436)
Q Consensus 384 C-~C~~~S~~~E~F~~LsL~Ip~~~-------~~sLed~L~~f~~~E~Legy~C~kC~k~~ 436 (436)
| .|+..+.+......++|..|+.. .....+.|+.-..-+.-...+|+.|+|.|
T Consensus 651 Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~e 711 (1118)
T KOG1275|consen 651 CGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPE 711 (1118)
T ss_pred cccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCCC
Confidence 9 79999888888888889888632 23455566543332222227899999975
No 40
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.22 E-value=1.3e-06 Score=84.48 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcccccccccCCCccccCceEEEE-EE
Q 013776 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLK-SV 381 (436)
Q Consensus 303 ~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~-s~ 381 (436)
+|||+.||+.+|+++|..-+.. +.-++|.|-.. ..
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~--------------------------------------------~~~~~~~~g~~~~~ 57 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE--------------------------------------------PKVDIIHGGKKDQD 57 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh--------------------------------------------HHHHHHhcCccccc
Confidence 5789999999999998865432 12455554221 11
Q ss_pred EEeCCCCeeeeeecceeEEEecCC-CCCCCHHHHHHhccCcccc
Q 013776 382 VKAQGNKASATVQPFLLLHLDIYS-EAVHTIEDALRLFSAPENL 424 (436)
Q Consensus 382 I~C~C~~~S~~~E~F~~LsL~Ip~-~~~~sLed~L~~f~~~E~L 424 (436)
.. +...|.|+.|++|.+. .+..+|++||+.|++.|.|
T Consensus 58 ~~------~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~i 95 (241)
T cd02670 58 DD------KLVNERLLQIPVPDDDDGGGITLEQCLEQYFNNSVF 95 (241)
T ss_pred cc------cccccceEEeecccCCCCCcCCHHHHHHHHhchhhh
Confidence 11 3344666776666543 2569999999999999975
No 41
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00011 Score=79.52 Aligned_cols=108 Identities=28% Similarity=0.341 Sum_probs=60.9
Q ss_pred cccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCC---------CCCC---cHHHHHHHHHHhcCCCCCCCCccccccc
Q 013776 204 LINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP---------KAGY---PTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (436)
Q Consensus 204 L~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~---------~~~~---~l~~~L~~L~~~l~~~~~~~~~~~~~~~ 271 (436)
|+|.||+||.||+||+|.++|+|+..+..+.....+ .... .-.+.+........... ..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 104 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNS---------SS 104 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccC---------Cc
Confidence 999999999999999999999999877665432111 0011 11122222222221110 00
Q ss_pred cCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 013776 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELL 323 (436)
Q Consensus 272 ~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~ 323 (436)
.. ...++-..+.+.+...... ...|....|+|||+++.-++..+.+-+.
T Consensus 105 ~~-~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 105 NE-SFNLSVTQLVQSRLNNGKK--YAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred cc-cccchHHHHHHHHhhhhhh--hhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 01 1222223333333322111 2235778999999999999988887665
No 42
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=85.77 E-value=0.44 Score=43.96 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=15.6
Q ss_pred CcccccCCCcchhHHHHHHHhC
Q 013776 201 PRGLINSGNLCFLNATLQALMS 222 (436)
Q Consensus 201 p~GL~N~GNTCYmNSvLQ~L~~ 222 (436)
.+|+-|.+|+|++||++|.+..
T Consensus 33 ft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp EE----SSSTHHHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHHHH
Confidence 4699999999999999998754
No 43
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00627 from PFAM. There are two conserved sequence motifs: AVEMPG and QFG.
Probab=81.31 E-value=0.51 Score=31.01 Aligned_cols=16 Identities=44% Similarity=0.929 Sum_probs=12.7
Q ss_pred ccccccccccceeecc
Q 013776 42 AEDKELQFGSLNFGTE 57 (436)
Q Consensus 42 ~~~~~~~~~~~~~~~~ 57 (436)
..--.+|||.|+|+++
T Consensus 18 i~~LdvQFGal~fGse 33 (33)
T PF12478_consen 18 ISSLDVQFGALDFGSE 33 (33)
T ss_pred cCceeEEeccccccCC
Confidence 3346799999999975
No 44
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=1.2 Score=48.35 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHhccCccccCc---cccCCCCCC
Q 013776 406 EAVHTIEDALRLFSAPENLEG---YRTSSTGNV 435 (436)
Q Consensus 406 ~~~~sLed~L~~f~~~E~Leg---y~C~kC~k~ 435 (436)
+...||++||.+|.++|.|.- ++|+.|+.+
T Consensus 672 ~rtiTL~dCl~eFskpEqLgl~DswyCpgCkef 704 (823)
T COG5560 672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEF 704 (823)
T ss_pred cCCCcHHHHHHHhccHhhcCCcccccCCchHhh
Confidence 356899999999999999953 999999854
No 45
>PF14353 CpXC: CpXC protein
Probab=71.12 E-value=3 Score=36.13 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=26.4
Q ss_pred EEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCccccCCCCCC
Q 013776 381 VVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNV 435 (436)
Q Consensus 381 ~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Legy~C~kC~k~ 435 (436)
+|+|+ |++.. .++.+..|.....+ ++.+..+..+ +--+.|++||+.
T Consensus 1 ~itCP~C~~~~-~~~v~~~I~~~~~p-------~l~e~il~g~-l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 1 EITCPHCGHEF-EFEVWTSINADEDP-------ELKEKILDGS-LFSFTCPSCGHK 47 (128)
T ss_pred CcCCCCCCCee-EEEEEeEEcCcCCH-------HHHHHHHcCC-cCEEECCCCCCc
Confidence 37897 98843 44555555544421 2333333333 334999999974
No 46
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=63.57 E-value=11 Score=38.32 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=19.3
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 013776 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE 321 (436)
Q Consensus 279 sP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~ee 321 (436)
.|..|...+-..... ..++--||+++|..||..++.+
T Consensus 144 ~~~~fVa~~Ya~~~~------~~G~~gDa~~~L~~ll~~~~~~ 180 (320)
T PF08715_consen 144 DPAPFVAWCYASTNA------KKGDPGDAEYVLSKLLKDADLD 180 (320)
T ss_dssp --HHHHHHHHHHTT--------TTS---HHHHHHHHHTTB-TT
T ss_pred ChHHHHHHHHHHcCC------CCCCCcCHHHHHHHHHHhcccc
Confidence 455555555443222 3467889999999998776643
No 47
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.85 E-value=11 Score=33.03 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=39.3
Q ss_pred EEEEeCCCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc--------cccCCCCCC
Q 013776 380 SVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--------YRTSSTGNV 435 (436)
Q Consensus 380 s~I~C~C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg--------y~C~kC~k~ 435 (436)
..++|.|++.-.-++..|-|.-.|. +.+-++-|++-.-.-.+.+ |.|+.||-+
T Consensus 69 rv~rcecghsf~d~r~nwkl~a~i~---vrdtee~lreiyp~s~ipdp~wme~reficpecg~l 129 (165)
T COG4647 69 RVIRCECGHSFGDYRENWKLHANIY---VRDTEEKLREIYPKSDIPDPQWMEIREFICPECGIL 129 (165)
T ss_pred cEEEEeccccccChhhCceeeeEEE---EcchHHHHHHhCcccCCCCchHHHHHHhhCccccce
Confidence 3789999998888899999998883 4566777766554433332 789999864
No 48
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=43.18 E-value=7.4 Score=44.63 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=25.4
Q ss_pred CCCHHHHHHhccCccccCc---cccCCCCCC
Q 013776 408 VHTIEDALRLFSAPENLEG---YRTSSTGNV 435 (436)
Q Consensus 408 ~~sLed~L~~f~~~E~Leg---y~C~kC~k~ 435 (436)
..+|++||+.|+.+|.|.. +.|++|+++
T Consensus 695 ~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~ 725 (842)
T KOG1870|consen 695 PNSLESCLELFSEPETLGKDDRWYCPQCKEL 725 (842)
T ss_pred cccHHHHHHhhcchhcCCccccccChHHHHH
Confidence 6899999999999999973 999999875
No 49
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=13 Score=41.30 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHhccCccccCc---cccCCCCC
Q 013776 406 EAVHTIEDALRLFSAPENLEG---YRTSSTGN 434 (436)
Q Consensus 406 ~~~~sLed~L~~f~~~E~Leg---y~C~kC~k 434 (436)
+...+++.||..|++-|.|.| +.|+.|-|
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk 706 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTK 706 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhc
Confidence 346899999999999999998 88999965
No 50
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=33.35 E-value=32 Score=36.93 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=28.7
Q ss_pred cccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHH
Q 013776 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFV 253 (436)
Q Consensus 202 ~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~ 253 (436)
.|+.-+-|.||+||.|=+++. |..-+.....+.++..+..-..++++++
T Consensus 369 kgiqgh~nscyldstlf~~f~---f~sv~dS~l~rrp~p~d~~nYse~q~~L 417 (724)
T KOG3556|consen 369 KGIQGHPNSCYLDSTLFKPFE---FDSVTDSTLPRRPPPSDSMNYSEMQHSL 417 (724)
T ss_pred ccccCCcchhhcccccccccc---ccccccccccCCCCcccccccHHHHHHH
Confidence 688888899999999887765 3333334444443333332233444444
No 51
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=30.22 E-value=26 Score=29.90 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=32.4
Q ss_pred EEEeCCCCeeeeeecceeEEEecCCCCCCCHHHHH----HhccCcc----ccCccccCCCCCC
Q 013776 381 VVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDAL----RLFSAPE----NLEGYRTSSTGNV 435 (436)
Q Consensus 381 ~I~C~C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L----~~f~~~E----~Legy~C~kC~k~ 435 (436)
.|+|.|+|.-......+-+..-|... .=.+.+ ...++++ .+-.|.|+.||-+
T Consensus 24 ~vkc~CGh~f~d~r~NwK~~alv~vR---d~~E~~~~iYp~~~aPdp~w~~irEyyCP~Cgt~ 83 (112)
T PF08882_consen 24 VVKCDCGHEFCDARENWKLGALVYVR---DPEEIHPEIYPFTMAPDPEWQVIREYYCPGCGTQ 83 (112)
T ss_pred eeeccCCCeecChhcChhhCcEEEec---ChHHhhhhhcccccCCCCCcEEEEEEECCCCcce
Confidence 67899999876666677777666332 223333 3335543 2334999999854
No 52
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=18 Score=38.81 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=27.1
Q ss_pred cCcccccCCCcchhHHHHHHHhCChhHHHHH
Q 013776 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLL 230 (436)
Q Consensus 200 ~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~L 230 (436)
...|+.+.+|||+||..+|.++.++.|....
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~ 106 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIYDA 106 (492)
T ss_pred cccccccccccceeehhhheeccCCcEeecc
Confidence 3579999999999999999999999887554
No 53
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.34 E-value=59 Score=22.88 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHHHhccCccccCccccCCCCC
Q 013776 412 EDALRLFSAPENLEGYRTSSTGN 434 (436)
Q Consensus 412 ed~L~~f~~~E~Legy~C~kC~k 434 (436)
++|++.+.+.---+|+.|++||.
T Consensus 4 ~~c~~~l~~~RW~~g~~CP~Cg~ 26 (46)
T PF12760_consen 4 EACREYLEEIRWPDGFVCPHCGS 26 (46)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCC
Confidence 45555555555556788999985
Done!