Query 013776
Match_columns 436
No_of_seqs 197 out of 1283
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 5.6E-39 1.9E-43 324.9 13.9 207 199-435 6-240 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 8.2E-38 2.8E-42 320.5 11.3 207 199-435 60-277 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.1E-36 3.6E-41 303.9 15.9 208 199-435 7-225 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 8.7E-37 3E-41 305.3 15.3 208 200-436 2-236 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 4.5E-34 1.6E-38 291.8 8.5 199 199-435 12-218 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 6.6E-33 2.3E-37 279.7 14.8 172 199-434 4-179 (353)
7 3ihp_A Ubiquitin carboxyl-term 100.0 1.9E-32 6.5E-37 304.6 13.4 191 198-435 341-572 (854)
8 3mhs_A Ubiquitin carboxyl-term 100.0 6.8E-32 2.3E-36 282.2 14.6 199 199-435 139-347 (476)
9 1vjv_A Ubiquitin carboxyl-term 100.0 5.3E-32 1.8E-36 278.2 12.7 178 197-435 20-210 (415)
10 2f1z_A Ubiquitin carboxyl-term 100.0 4.7E-31 1.6E-35 279.5 13.2 174 197-434 171-348 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.6 3.9E-16 1.3E-20 156.1 2.6 105 200-321 8-114 (374)
12 1qmy_A Protease, leader protea 53.7 6 0.0002 34.0 2.1 22 201-222 13-34 (167)
13 3mp2_A Non-structural protein 50.5 15 0.00051 33.7 4.4 22 204-225 16-37 (211)
14 2fe8_A PP1AB, ORF1AB, replicas 37.9 89 0.0031 30.3 7.9 32 279-316 144-175 (315)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=324.86 Aligned_cols=207 Identities=24% Similarity=0.403 Sum_probs=170.4
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc------CCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR------DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~------~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~ 272 (436)
.+.+||.|+||||||||+||||+++|+|+++|+..... .+.....+++++|+.|+..||..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~------------- 72 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG------------- 72 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSS-------------
T ss_pred CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcC-------------
Confidence 35699999999999999999999999999999875322 12233467999999999999843
Q ss_pred CCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCC-ccCCCcccccchhhhhhHhhh
Q 013776 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST-SINGANTALVSLAEEDEWETV 351 (436)
Q Consensus 273 ~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~ 351 (436)
....++|..|+.++++..+.| .+++||||||||++|||.||+++.+..+++. ......+.++...+.+.|..+
T Consensus 73 -~~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~ 146 (367)
T 2y6e_A 73 -RDAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENH 146 (367)
T ss_dssp -SCSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHH
T ss_pred -CCCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHH
Confidence 256899999999999987765 7999999999999999999999987665543 222333444556678889887
Q ss_pred CCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCC-----------------CCCCHHH
Q 013776 352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE-----------------AVHTIED 413 (436)
Q Consensus 352 ~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~-----------------~~~sLed 413 (436)
..++. ++|.++|+|+++++++|. |++++.++|+|++|+|+||.. ...+|++
T Consensus 147 ~~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~ 215 (367)
T 2y6e_A 147 RLRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRD 215 (367)
T ss_dssp HHHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHH
T ss_pred HHhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHH
Confidence 65544 557899999999999996 999999999999999999863 2469999
Q ss_pred HHHhccCccccCc---cccCCCCCC
Q 013776 414 ALRLFSAPENLEG---YRTSSTGNV 435 (436)
Q Consensus 414 ~L~~f~~~E~Leg---y~C~kC~k~ 435 (436)
||+.|+++|.|++ |+|++|++.
T Consensus 216 ~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 216 CIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp HHHHHTSCEECCC-CCEEETTTTEE
T ss_pred HHHHhcccccCCCCCCccCCCCCCC
Confidence 9999999999987 899999864
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=8.2e-38 Score=320.50 Aligned_cols=207 Identities=27% Similarity=0.352 Sum_probs=167.2
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc------CCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR------DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~------~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~ 272 (436)
.+++||.|+||||||||+||||+++|+|+++|+..... .......+++.+|+.|+..||..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~------------- 126 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG------------- 126 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHS-------------
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcC-------------
Confidence 45799999999999999999999999999999864321 11233467899999999999843
Q ss_pred CCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCc-cCCCcccccchhhhhhHhhh
Q 013776 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTS-INGANTALVSLAEEDEWETV 351 (436)
Q Consensus 273 ~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~ 351 (436)
....|+|..|+.++++..+.| .+++||||||||++|||.||+++.+...+... ....+.......+...|..+
T Consensus 127 -~~~~i~P~~f~~~l~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~ 200 (396)
T 2gfo_A 127 -QYRYISPKDFKITIGKINDQF-----AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKH 200 (396)
T ss_dssp -CEEEECCHHHHHHHHHHCGGG-----SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHH
T ss_pred -CCceECHHHHHHHHHHhchhh-----cCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHh
Confidence 246799999999999987765 89999999999999999999999765433221 11122223345567789877
Q ss_pred CCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---c
Q 013776 352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---Y 427 (436)
Q Consensus 352 ~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y 427 (436)
...+. ++|.++|+|+++++++|. |++.+.++|+|++|+|+||..+..+|++||+.|+++|.|+| |
T Consensus 201 ~~~~~-----------s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~ 269 (396)
T 2gfo_A 201 KQLNE-----------SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRF 269 (396)
T ss_dssp HHHCC-----------SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCE
T ss_pred hhccC-----------CccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCccc
Confidence 55443 567999999999999996 99999999999999999998777899999999999999988 9
Q ss_pred ccCCCCCC
Q 013776 428 RTSSTGNV 435 (436)
Q Consensus 428 ~C~kC~k~ 435 (436)
+|++|++.
T Consensus 270 ~C~~C~~~ 277 (396)
T 2gfo_A 270 YCSHCRAR 277 (396)
T ss_dssp EETTTTEE
T ss_pred ccCCcccc
Confidence 99999864
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.1e-36 Score=303.89 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=170.7
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC----CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD----IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~----~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (436)
.+.+||.|+||||||||+||+|+++|+|+++++...... ......++.++|+.|+..||.. ..
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-------------~~ 73 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTS-------------SP 73 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTC-------------CT
T ss_pred CCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcC-------------CC
Confidence 457999999999999999999999999999998753321 1234568999999999999842 34
Q ss_pred CCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCcc-CCCcccccchhhhhhHhhhCC
Q 013776 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI-NGANTALVSLAEEDEWETVGP 353 (436)
Q Consensus 275 ~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~ 353 (436)
...++|..|+.+++...+.| .+++||||||||++|||.||+++.+....+... ...........+...|..+..
T Consensus 74 ~~~~~p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (348)
T 3nhe_A 74 NDVVSPSEFKTQIQRYAPRF-----VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLE 148 (348)
T ss_dssp TCEECCHHHHHHHHHHSGGG-----SSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHhhhhh-----CCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHh
Confidence 67899999999999997765 789999999999999999999998765444321 122223344566778887766
Q ss_pred CCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCC--CCCHHHHHHhccCccccCc---c
Q 013776 354 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEG---Y 427 (436)
Q Consensus 354 ~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~--~~sLed~L~~f~~~E~Leg---y 427 (436)
.+. ++|.++|+|+++++++|. |++.+.++|+|++|+|+||... ..+|++||+.|+++|.++| |
T Consensus 149 ~~~-----------s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~ 217 (348)
T 3nhe_A 149 RED-----------SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKP 217 (348)
T ss_dssp TCC-----------CHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCC
T ss_pred hcC-----------CccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCce
Confidence 554 557899999999999996 9999999999999999998744 3699999999999999998 8
Q ss_pred ccCCCCCC
Q 013776 428 RTSSTGNV 435 (436)
Q Consensus 428 ~C~kC~k~ 435 (436)
+|++|++.
T Consensus 218 ~C~~C~~~ 225 (348)
T 3nhe_A 218 TCCRCRGR 225 (348)
T ss_dssp EETTTTEE
T ss_pred ECCCCCCc
Confidence 99999864
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=8.7e-37 Score=305.29 Aligned_cols=208 Identities=28% Similarity=0.359 Sum_probs=161.1
Q ss_pred cCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc---CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCC
Q 013776 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (436)
Q Consensus 200 ~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~---~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~ 276 (436)
+.+||.|+||||||||+||+|+++|+|+++++..... .......++..+|+.|+..||... ...
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-------------~~~ 68 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD-------------SCE 68 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS-------------SCC
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCC-------------CCC
Confidence 4689999999999999999999999999999875321 112334589999999999999542 346
Q ss_pred ccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccC----------------CCccccc
Q 013776 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN----------------GANTALV 340 (436)
Q Consensus 277 ~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~----------------~~~~~~~ 340 (436)
.++|..|+.++++..+.| .+++||||||||.+|||.||+++.....+..... .......
T Consensus 69 ~v~p~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (355)
T 3i3t_A 69 AVNPTRFRAVFQKYVPSF-----SGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSD 143 (355)
T ss_dssp CBCCHHHHHHHHHHCGGG-----CSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCH
T ss_pred cccHHHHHHHHHHhChhh-----CCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCH
Confidence 799999999999987765 8999999999999999999999976554322110 0111122
Q ss_pred chhhhhhHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCC----CCCCHHHHH
Q 013776 341 SLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE----AVHTIEDAL 415 (436)
Q Consensus 341 ~~~~~~~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~----~~~sLed~L 415 (436)
...+...|..+..++. ++|.++|+|++.+.++|. |++.+.++|+|++|+|+||.. +..+|++||
T Consensus 144 ~~~~~~~~~~~~~~~~-----------s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L 212 (355)
T 3i3t_A 144 DDRANLMWKRYLERED-----------SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF 212 (355)
T ss_dssp HHHHHHHHHHHHHHCC-----------SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHH
T ss_pred HHHHHHHHHHhhhccC-----------CcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHH
Confidence 3345567877655544 567999999999999996 999999999999999999874 357999999
Q ss_pred HhccCccccCc---cccCCCCCCC
Q 013776 416 RLFSAPENLEG---YRTSSTGNVQ 436 (436)
Q Consensus 416 ~~f~~~E~Leg---y~C~kC~k~~ 436 (436)
+.|+++|.++| |+|++|++.+
T Consensus 213 ~~~~~~e~l~~~n~~~C~~C~~~~ 236 (355)
T 3i3t_A 213 NLFTKEEELESENAPVCDRCRQKT 236 (355)
T ss_dssp HHHHCCEEECGGGCCCCSSSCCCC
T ss_pred HHhCCccccCCCCCeeCCCCCCcc
Confidence 99999999998 9999999763
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=4.5e-34 Score=291.79 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=148.9
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccC--C--CCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--I--PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~--~--~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (436)
..++||.|+||||||||+||||+++|+|+++|+.+.... . .....+++++|+.||..|| ..
T Consensus 12 ~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~---------------~~ 76 (404)
T 2ayn_A 12 ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMD---------------KT 76 (404)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHH---------------HH
T ss_pred CCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHh---------------cC
Confidence 457999999999999999999999999999999865331 0 1123579999999999998 22
Q ss_pred CCccChHHHHHHHHhhCCCCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCC
Q 013776 275 GRPFSPSMFEAVLKNFTPDVPNS-ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGP 353 (436)
Q Consensus 275 ~~~isP~~~~~~l~~~~p~f~n~-~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 353 (436)
..+++|..|+.++++..|.|... .+.++.||||||||++|||.||+++........ ....+...|..+..
T Consensus 77 ~~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~---------~e~~~~~~~~~~~~ 147 (404)
T 2ayn_A 77 SSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV---------KETDSSSASAATPS 147 (404)
T ss_dssp CSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------------------
T ss_pred CCcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc---------cccchhhhhhhhcc
Confidence 47899999999999988877311 134689999999999999999999854321100 00112334544322
Q ss_pred CCCcccccccccCCCccccCceEEEEEEEEeC-CCCee--eeeecceeEEEecCCCCCCCHHHHHHhccCccccCccccC
Q 013776 354 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTS 430 (436)
Q Consensus 354 ~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S--~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Legy~C~ 430 (436)
.. .++|.++|+|+++++++|. |++.+ .++|+|++|+|+||. ...+|++||+.|+. |.++ |+|+
T Consensus 148 ~~-----------~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~-~~~~l~~~L~~~~~-e~l~-~~c~ 213 (404)
T 2ayn_A 148 KK-----------KSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQ-EVKYLFTGLKLRLQ-EEIT-KQSP 213 (404)
T ss_dssp -------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSS-SCCBHHHHHHHTTE-ECCC-CEET
T ss_pred cc-----------CchhhhhccEEEEEEEEecCCCCccCceeeccCceEEeecCC-CcccHHHHHHHhcc-ccee-ecch
Confidence 22 3678999999999999996 99984 799999999999975 34699999999997 5565 8999
Q ss_pred CCCCC
Q 013776 431 STGNV 435 (436)
Q Consensus 431 kC~k~ 435 (436)
+|++.
T Consensus 214 ~c~~~ 218 (404)
T 2ayn_A 214 TLQRN 218 (404)
T ss_dssp TTTEE
T ss_pred hhCCc
Confidence 99863
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6.6e-33 Score=279.71 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=144.0
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCcc
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~i 278 (436)
.+++||.|+||||||||+||||+++|+|+++++...... .....++.++|+.||..|+. ...++
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-~~~~~~~~~~l~~lf~~l~~---------------~~~~~ 67 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-DDSSKSVPLALQRVFYELQH---------------SDKPV 67 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-SCTTTCHHHHHHHHHHHHHH---------------CSSCB
T ss_pred CCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-CcccccHHHHHHHHHHHHhh---------------cCCCC
Confidence 457999999999999999999999999999998654221 22345799999999999972 24578
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcc
Q 013776 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (436)
Q Consensus 279 sP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~ 358 (436)
.|..|+..+.. + .|.++.||||||||++|||.||+++....
T Consensus 68 ~~~~l~~~~~~--~-----~~~~~~QqDA~EFl~~LLd~L~~~~~~~~-------------------------------- 108 (353)
T 1nb8_A 68 GTKKLTKSFGW--E-----TLDSFMQHDVQELCRVLLDNVENKMKGTC-------------------------------- 108 (353)
T ss_dssp CCHHHHHHHTC--C-----BTTTTTTSCHHHHHHHHHHHHHHHTTTST--------------------------------
T ss_pred CCHHHHhhcCC--C-----CCCcccchhHHHHHHHHHHHHHHHhcCCC--------------------------------
Confidence 89988877752 2 35889999999999999999999864210
Q ss_pred cccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCCC
Q 013776 359 VTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGN 434 (436)
Q Consensus 359 ~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~k 434 (436)
..++|.++|+|+++++++|. |++.+.+.|+|++|+|+||. ..+|++||+.|+++|.|+| |.|++|++
T Consensus 109 -------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~--~~~l~~~L~~~~~~E~l~~~~~~~C~~c~~ 179 (353)
T 1nb8_A 109 -------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEHGL 179 (353)
T ss_dssp -------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTT--CSBHHHHHHHHTCCEEECTTTCEECGGGCE
T ss_pred -------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECC--CcchHHHHHHhhCccccCCCccccCCcCcc
Confidence 02567899999999999996 99999999999999999974 5799999999999999997 88999974
No 7
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=304.59 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=152.4
Q ss_pred CccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhc----cCCCCCCCcHHHHHHHHHHhcCCCCCCCCcc------c
Q 013776 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT----RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKK------K 267 (436)
Q Consensus 198 ~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~----~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~------~ 267 (436)
..+.+||.|+||||||||+||+|+++|+|+++|+.... ........++.++|+.|+..||......... .
T Consensus 341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~ 420 (854)
T 3ihp_A 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER 420 (854)
T ss_dssp STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-------------
T ss_pred CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccc
Confidence 45679999999999999999999999999999975322 1233445689999999999998654211000 0
Q ss_pred cccccCCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhh
Q 013776 268 NISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDE 347 (436)
Q Consensus 268 ~~~~~~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (436)
..........|+|..|+.++++..+.| .+++||||||||++||+.||+++..
T Consensus 421 ~~~~~~~~~~isP~~f~~~l~~~~~~F-----~~~~QQDA~EFl~~LLd~L~~el~~----------------------- 472 (854)
T 3ihp_A 421 VPEQKEVQDGIAPRMFKALIGKGHPEF-----STNRQQDAQEFFLHLINMVERNCRS----------------------- 472 (854)
T ss_dssp --------CCBCCHHHHHHHTTTCTTT-----TSSSCCBHHHHHHHHHHHHHHTCTT-----------------------
T ss_pred ccccccCCCccChHHHHHHHhhhcccc-----ccccccCHHHHHHHHHHHHHHHhcc-----------------------
Confidence 001113567999999999999987766 8899999999999999999997631
Q ss_pred HhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCC-------------------
Q 013776 348 WETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA------------------- 407 (436)
Q Consensus 348 w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~------------------- 407 (436)
.++|.++|+|+++++++|. |++++.++++|++|+|+||...
T Consensus 473 -------------------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~ 533 (854)
T 3ihp_A 473 -------------------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEE 533 (854)
T ss_dssp -------------------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHH
T ss_pred -------------------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhccccccccc
Confidence 1346899999999999995 9999999999999999998531
Q ss_pred -----------CCCHHHHHHhccCccccCccccCCCCCC
Q 013776 408 -----------VHTIEDALRLFSAPENLEGYRTSSTGNV 435 (436)
Q Consensus 408 -----------~~sLed~L~~f~~~E~Legy~C~kC~k~ 435 (436)
..+|++||+.|+++|.|+||+|++|++.
T Consensus 534 ~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k 572 (854)
T 3ihp_A 534 EKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAK 572 (854)
T ss_dssp TTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEETTTTEE
T ss_pred ccccccccccCCCCHHHHHHHhcCceEeeeeeccccCCc
Confidence 1599999999999999999999999864
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.97 E-value=6.8e-32 Score=282.23 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=148.2
Q ss_pred ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc---CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCC
Q 013776 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (436)
Q Consensus 199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~---~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~ 275 (436)
.+.+||.|+||||||||+||+|+++|+|+++++..... .......++.++|..++..||..... ........
T Consensus 139 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-----~~~~~~~~ 213 (476)
T 3mhs_A 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNT-----KQASSSST 213 (476)
T ss_dssp TCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC-------------
T ss_pred CCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccc-----cccccccc
Confidence 46799999999999999999999999999999865432 12234568999999999999853211 01111223
Q ss_pred CccChHHHHHHH---HhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhC
Q 013776 276 RPFSPSMFEAVL---KNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (436)
Q Consensus 276 ~~isP~~~~~~l---~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (436)
..+.|..++..+ ++..+.| .+++||||||||++||+.||+++........ +.|...
T Consensus 214 ~~~~~~~~~~~l~~~~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~---------------~~~~~~- 272 (476)
T 3mhs_A 214 STNRQTGFIYLLTCAWKINQNL-----AGYSQQDAHEFWQFIINQIHQSYVLDLPNAK---------------EVSRAN- 272 (476)
T ss_dssp CCCSCHHHHHHHHHHHHHCGGG-----SSSSCEEHHHHHHHHHHHHHHHHHHHCCC----------------------C-
T ss_pred cccCcchHHHHHHHHHHhcccc-----CCCCCcCHHHHHHHHHHHHHHHHhhcccccc---------------cccccc-
Confidence 356666665554 4665554 8999999999999999999999876443211 011111
Q ss_pred CCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeee-eeecceeEEEecCCCCCCCHHHHHHhccCccccCc--cc
Q 013776 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASA-TVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--YR 428 (436)
Q Consensus 353 ~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~-~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg--y~ 428 (436)
.....++|.++|+|+++++++|. |++++. ++|+|++|+|+||. ..+|++||+.|+++|.+++ |+
T Consensus 273 ----------~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~--~~sl~~~L~~~~~~E~l~~~~~~ 340 (476)
T 3mhs_A 273 ----------NKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD--KKKLYECLDSFHKKEQLKDFNYH 340 (476)
T ss_dssp ----------CCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT--CCBHHHHHHHHHCCEECSSCCCE
T ss_pred ----------cccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh--hhHHHHHHHHhcChhhccCCCCc
Confidence 11124678999999999999996 999975 49999999999964 5799999999999999996 99
Q ss_pred cCCCCCC
Q 013776 429 TSSTGNV 435 (436)
Q Consensus 429 C~kC~k~ 435 (436)
|++|++.
T Consensus 341 C~~C~~~ 347 (476)
T 3mhs_A 341 CGECNST 347 (476)
T ss_dssp ETTTTEE
T ss_pred CCccCCc
Confidence 9999865
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.97 E-value=5.3e-32 Score=278.20 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=138.0
Q ss_pred cCccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCC--------CCcHHHHHHHHHHhcCCCCCCCCcccc
Q 013776 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKA--------GYPTLTAFVGFVSDFDTPSGGSSKKKN 268 (436)
Q Consensus 197 ~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~--------~~~l~~~L~~L~~~l~~~~~~~~~~~~ 268 (436)
....++||.|+||||||||+||+|+++|+|+++|+.......... ..+++++|+.||..||..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--------- 90 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNK--------- 90 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcC---------
Confidence 345679999999999999999999999999999988654321111 237999999999999832
Q ss_pred ccccCCCCccChHHHHHHHHhhCCCCCCCCCC--CCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhh
Q 013776 269 ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISG--RPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED 346 (436)
Q Consensus 269 ~~~~~~~~~isP~~~~~~l~~~~p~f~n~~f~--g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~ 346 (436)
...+++|..|+.+++...|.|...... ++.||||||||++||+.|++++..
T Consensus 91 -----~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------- 143 (415)
T 1vjv_A 91 -----SFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------- 143 (415)
T ss_dssp ------CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----------------------
T ss_pred -----CCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----------------------
Confidence 257899999999999988776211111 789999999999999999999842
Q ss_pred hHhhhCCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCee--eeeecceeEEEecCCCCCCCHHHHHHhccCccc
Q 013776 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPEN 423 (436)
Q Consensus 347 ~w~~~~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S--~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~ 423 (436)
++|.++|+ +++++++|. |++.+ .+.|+|++|+|+||. ...+|++||+.|+.+ .
T Consensus 144 ---------------------~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~-~~~~l~~~L~~~~~e-~ 199 (415)
T 1vjv_A 144 ---------------------KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISG-TTNFMRNGLLEGLNE-K 199 (415)
T ss_dssp ---------------------HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCT-TCCBHHHHHHHHHEE-C
T ss_pred ---------------------chHHHHHH-hheEEEEECCCCCCccccccccceeeeecccc-ccchHHHHHHHHhhh-h
Confidence 34689999 999999996 99986 599999999999975 346899999999984 5
Q ss_pred cCccccCCCCCC
Q 013776 424 LEGYRTSSTGNV 435 (436)
Q Consensus 424 Legy~C~kC~k~ 435 (436)
++ |+|++|++.
T Consensus 200 i~-~~c~~c~~~ 210 (415)
T 1vjv_A 200 IE-KRSDLTGAN 210 (415)
T ss_dssp ----------CC
T ss_pred hh-hcccccCCc
Confidence 55 899999875
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.97 E-value=4.7e-31 Score=279.45 Aligned_cols=174 Identities=18% Similarity=0.282 Sum_probs=142.6
Q ss_pred cCccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCC
Q 013776 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (436)
Q Consensus 197 ~~~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~ 276 (436)
...+++||.|+||||||||+||||+++|+|+++++...... .....++.++|+.||..|+. ...
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-~~~~~~~~~~l~~lf~~l~~---------------~~~ 234 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-DDSSKSVPLALQRVFYELQH---------------SDK 234 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-SCTTTCHHHHHHHHHHHHHH---------------CSS
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-CcccchHHHHHHHHHHHHhc---------------CCC
Confidence 34567999999999999999999999999999997654221 22345799999999999972 245
Q ss_pred ccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCC
Q 013776 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (436)
Q Consensus 277 ~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~ 356 (436)
++.|..|+..++. + .|.+++||||||||++|||.||+++....
T Consensus 235 ~~~~~~l~~~~~~--~-----~~~~~~QqDa~Efl~~LLd~L~~~l~~~~------------------------------ 277 (522)
T 2f1z_A 235 PVGTKKLTKSFGW--E-----TLDSFMQHDVQELCRVLLDNVENKMKGTC------------------------------ 277 (522)
T ss_dssp CBCCTTHHHHTCC--C-----TTTSSTTSCHHHHHHHHHHHHHHHHTTST------------------------------
T ss_pred ccCcHHHHhhcCC--c-----cCCCcccccHHHHHHHHHHHHHhhccCCc------------------------------
Confidence 7888888776542 2 35889999999999999999999874311
Q ss_pred cccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCC
Q 013776 357 SAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSST 432 (436)
Q Consensus 357 S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC 432 (436)
..++|.++|+|+++++++|. |++.+.+.|+|++|+|+||. ..+|++||+.|+++|.|+| |.|++|
T Consensus 278 ---------~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~--~~~l~~~L~~~~~~E~l~~~n~~~C~~c 346 (522)
T 2f1z_A 278 ---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEH 346 (522)
T ss_dssp ---------TTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTT--CCBHHHHHHHHTCEEEECTTSCBCCGGG
T ss_pred ---------cccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCC--cccchHHHHHhhceeecCCcceeecCcC
Confidence 02467899999999999996 99999999999999999974 5799999999999999997 889999
Q ss_pred CC
Q 013776 433 GN 434 (436)
Q Consensus 433 ~k 434 (436)
++
T Consensus 347 ~~ 348 (522)
T 2f1z_A 347 GL 348 (522)
T ss_dssp CS
T ss_pred Cc
Confidence 75
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.57 E-value=3.9e-16 Score=156.05 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred cCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCC-CCCCcHHHHH-HHHHHhcCCCCCCCCccccccccCCCCc
Q 013776 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP-KAGYPTLTAF-VGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (436)
Q Consensus 200 ~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~-~~~~~l~~~L-~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (436)
.|+||.|+||||||||+||+|+.+|++...|+.+...... .....+..+| +.++..|. ...
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lr-----------------k~~ 70 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLR-----------------IYG 70 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHH-----------------HTS
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHh-----------------hcC
Confidence 5799999999999999999999999999999987533222 1112477788 78888885 278
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 013776 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE 321 (436)
Q Consensus 278 isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~ee 321 (436)
+.|..++..|++..|+|+...-.++.||||.||+..||..|...
T Consensus 71 ~~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ 114 (374)
T 2vhf_A 71 YVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRV 114 (374)
T ss_dssp EECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCC
T ss_pred CCcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence 99999999999999988544222689999999999999998864
No 12
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=53.67 E-value=6 Score=34.02 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.0
Q ss_pred CcccccCCCcchhHHHHHHHhC
Q 013776 201 PRGLINSGNLCFLNATLQALMS 222 (436)
Q Consensus 201 p~GL~N~GNTCYmNSvLQ~L~~ 222 (436)
..|+.|.-++|++|++||....
T Consensus 13 fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHH
Confidence 3689999999999999998653
No 13
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=50.49 E-value=15 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=16.7
Q ss_pred cccCCCcchhHHHHHHHhCChh
Q 013776 204 LINSGNLCFLNATLQALMSCSP 225 (436)
Q Consensus 204 L~N~GNTCYmNSvLQ~L~~tp~ 225 (436)
|.=.-|+||+||++=+|-++..
T Consensus 16 Lkq~dNNCwVNaa~l~LQ~~~~ 37 (211)
T 3mp2_A 16 LKQGDNNCWINACCYQLQAFDF 37 (211)
T ss_dssp ECCCTTCHHHHHHHHHHTTCTT
T ss_pred EEccCCCcHHHHHHHHHHhcCh
Confidence 4555799999999877766554
No 14
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=37.88 E-value=89 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=20.5
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHH
Q 013776 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMD 316 (436)
Q Consensus 279 sP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd 316 (436)
.|..|...+-..... .-++--||+++|..||.
T Consensus 144 d~~~FVa~~Ya~~~~------~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 144 DAANFCALILAYSNK------TVGELGDVRETMTHLLQ 175 (315)
T ss_dssp CCHHHHHHHHHHTTC------CTTSCCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHhcCC------CCCCCccHHHHHHHHHh
Confidence 455665555444322 34677899999998843
Done!