Query 013777
Match_columns 436
No_of_seqs 372 out of 2047
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 4.6E-35 1E-39 284.0 22.3 248 158-419 22-281 (281)
2 COG2730 BglC Endoglucanase [Ca 100.0 3.9E-29 8.4E-34 255.1 18.2 296 131-433 47-381 (407)
3 cd00257 Fascin Fascin-like dom 99.8 1.4E-17 3E-22 141.4 13.2 104 1-112 7-110 (119)
4 PF07745 Glyco_hydro_53: Glyco 99.6 3.1E-14 6.8E-19 140.1 19.6 226 158-413 25-294 (332)
5 PF06268 Fascin: Fascin domain 99.6 2E-14 4.4E-19 120.4 11.0 100 6-112 2-102 (111)
6 PF02449 Glyco_hydro_42: Beta- 99.5 8.9E-13 1.9E-17 133.8 17.4 247 153-418 6-338 (374)
7 COG3867 Arabinogalactan endo-1 99.4 2.5E-11 5.4E-16 114.3 21.4 230 159-414 65-341 (403)
8 PRK10150 beta-D-glucuronidase; 99.4 7.2E-11 1.6E-15 127.1 24.0 225 160-417 316-557 (604)
9 TIGR03356 BGL beta-galactosida 99.3 1.9E-11 4.1E-16 125.8 15.2 141 152-304 51-212 (427)
10 COG3934 Endo-beta-mannanase [C 99.1 1.7E-10 3.7E-15 115.1 9.4 242 153-418 22-281 (587)
11 PF02836 Glyco_hydro_2_C: Glyc 99.1 1.3E-08 2.7E-13 100.2 21.0 120 160-308 39-158 (298)
12 cd00257 Fascin Fascin-like dom 99.1 3E-10 6.6E-15 96.2 8.0 69 4-78 51-119 (119)
13 smart00633 Glyco_10 Glycosyl h 99.0 8.8E-08 1.9E-12 92.1 21.3 195 196-423 14-233 (254)
14 PRK09852 cryptic 6-phospho-bet 99.0 2.1E-09 4.6E-14 111.6 10.1 114 152-275 68-182 (474)
15 COG2723 BglB Beta-glucosidase/ 99.0 1E-08 2.2E-13 104.0 14.3 145 152-306 56-222 (460)
16 PF06268 Fascin: Fascin domain 98.9 4.1E-09 8.9E-14 88.3 9.0 69 4-78 43-111 (111)
17 PRK15014 6-phospho-beta-glucos 98.9 5.1E-09 1.1E-13 109.0 10.7 114 152-275 66-180 (477)
18 TIGR01233 lacG 6-phospho-beta- 98.9 2.6E-08 5.7E-13 103.5 14.1 112 152-276 50-162 (467)
19 PF01229 Glyco_hydro_39: Glyco 98.8 2.1E-08 4.5E-13 105.3 12.4 267 134-417 23-324 (486)
20 PRK13511 6-phospho-beta-galact 98.8 2.2E-08 4.8E-13 104.3 10.2 112 152-276 51-163 (469)
21 PF00232 Glyco_hydro_1: Glycos 98.8 2E-08 4.3E-13 104.5 9.1 141 152-304 55-217 (455)
22 PRK09593 arb 6-phospho-beta-gl 98.8 3.9E-08 8.5E-13 102.5 11.0 115 152-276 70-185 (478)
23 PRK09589 celA 6-phospho-beta-g 98.7 4E-08 8.6E-13 102.4 10.4 114 152-275 64-178 (476)
24 PF06229 FRG1: FRG1-like famil 98.7 7.4E-08 1.6E-12 87.7 10.4 97 2-110 6-104 (191)
25 PLN02849 beta-glucosidase 98.7 4.7E-08 1E-12 102.3 9.9 114 152-276 76-190 (503)
26 PLN02814 beta-glucosidase 98.7 5.1E-08 1.1E-12 102.1 10.0 114 152-276 74-188 (504)
27 PLN02998 beta-glucosidase 98.7 4.8E-08 1E-12 102.1 9.7 114 152-276 79-193 (497)
28 PF12876 Cellulase-like: Sugar 98.6 5.4E-08 1.2E-12 77.9 5.1 78 255-335 1-88 (88)
29 PRK09525 lacZ beta-D-galactosi 98.6 4.3E-06 9.2E-11 94.8 21.6 112 160-308 374-489 (1027)
30 PF06229 FRG1: FRG1-like famil 98.6 1.3E-07 2.8E-12 86.2 6.7 74 4-82 46-119 (191)
31 PRK10340 ebgA cryptic beta-D-g 98.5 4.6E-06 1E-10 94.6 19.6 114 160-307 358-475 (1021)
32 PF03198 Glyco_hydro_72: Gluca 98.5 5.9E-06 1.3E-10 80.1 17.3 122 160-307 56-180 (314)
33 PF13204 DUF4038: Protein of u 98.5 7.1E-06 1.5E-10 80.3 16.5 137 160-309 33-187 (289)
34 PF01301 Glyco_hydro_35: Glyco 98.4 2.8E-06 6E-11 84.3 12.6 136 160-307 27-179 (319)
35 PF14488 DUF4434: Domain of un 98.3 2.7E-05 5.9E-10 69.8 15.5 135 160-308 23-161 (166)
36 PF00331 Glyco_hydro_10: Glyco 98.1 8.6E-05 1.9E-09 73.8 16.4 233 162-423 26-292 (320)
37 COG1874 LacA Beta-galactosidas 98.0 5.8E-05 1.2E-09 80.9 12.2 135 159-300 32-191 (673)
38 PF14587 Glyco_hydr_30_2: O-Gl 97.8 0.0046 1E-07 62.0 21.7 204 203-417 109-358 (384)
39 COG3693 XynA Beta-1,4-xylanase 97.8 0.0024 5.2E-08 62.0 18.9 197 196-418 80-305 (345)
40 KOG0626 Beta-glucosidase, lact 97.8 0.00014 2.9E-09 75.1 10.0 114 153-276 89-204 (524)
41 PF02055 Glyco_hydro_30: O-Gly 97.7 0.0035 7.7E-08 65.8 19.9 229 167-416 110-380 (496)
42 PLN03059 beta-galactosidase; P 97.6 0.0013 2.9E-08 71.8 14.7 142 160-309 62-223 (840)
43 COG3250 LacZ Beta-galactosidas 97.3 0.012 2.5E-07 65.1 18.1 109 160-307 324-432 (808)
44 PF11790 Glyco_hydro_cc: Glyco 97.3 0.0092 2E-07 56.8 14.9 133 251-405 55-200 (239)
45 COG5309 Exo-beta-1,3-glucanase 97.2 0.041 8.9E-07 52.2 17.3 207 160-413 66-279 (305)
46 PF04601 DUF569: Protein of un 97.0 0.012 2.6E-07 50.9 11.1 96 1-103 13-118 (142)
47 COG5520 O-Glycosyl hydrolase [ 96.9 0.083 1.8E-06 52.1 17.2 254 131-418 40-312 (433)
48 TIGR01515 branching_enzym alph 96.5 0.1 2.2E-06 56.7 17.0 146 160-308 160-349 (613)
49 PRK12313 glycogen branching en 96.5 0.14 3E-06 55.9 17.5 144 160-308 174-362 (633)
50 PLN02447 1,4-alpha-glucan-bran 96.3 0.14 3.1E-06 56.2 16.4 146 160-308 254-446 (758)
51 KOG2233 Alpha-N-acetylglucosam 96.3 0.069 1.5E-06 54.5 12.8 148 160-307 81-281 (666)
52 TIGR02402 trehalose_TreZ malto 96.2 0.18 3.8E-06 53.9 16.1 138 161-307 115-280 (542)
53 smart00642 Aamy Alpha-amylase 96.1 0.021 4.6E-07 51.2 7.7 59 161-219 23-91 (166)
54 PF03662 Glyco_hydro_79n: Glyc 96.1 0.007 1.5E-07 59.7 4.8 170 196-383 107-298 (319)
55 PRK05402 glycogen branching en 96.1 0.24 5.3E-06 54.8 17.3 145 160-308 269-458 (726)
56 TIGR02104 pulA_typeI pullulana 95.9 2.4 5.3E-05 46.0 23.6 136 161-307 168-348 (605)
57 PLN02960 alpha-amylase 95.7 0.42 9.1E-06 53.1 16.7 148 159-308 419-611 (897)
58 PRK10785 maltodextrin glucosid 95.7 0.43 9.4E-06 51.6 16.7 59 160-218 182-246 (598)
59 COG1523 PulA Type II secretory 95.6 0.081 1.8E-06 57.6 10.8 68 156-223 199-293 (697)
60 PF05089 NAGLU: Alpha-N-acetyl 95.6 0.046 1E-06 54.0 8.0 170 160-333 22-250 (333)
61 KOG3962 Predicted actin-bundli 95.4 0.051 1.1E-06 50.0 7.0 92 4-101 55-149 (246)
62 PLN02877 alpha-amylase/limit d 95.3 0.4 8.7E-06 54.0 15.2 112 196-311 464-599 (970)
63 PLN02161 beta-amylase 95.3 0.29 6.3E-06 50.7 13.0 134 160-311 120-265 (531)
64 PF13200 DUF4015: Putative gly 95.2 1.4 3E-05 43.6 17.0 141 160-301 16-189 (316)
65 TIGR02102 pullulan_Gpos pullul 95.2 0.61 1.3E-05 53.6 16.4 103 196-310 553-673 (1111)
66 PRK14705 glycogen branching en 95.2 0.67 1.5E-05 53.7 16.7 146 160-307 769-957 (1224)
67 PF00128 Alpha-amylase: Alpha 95.0 0.048 1E-06 52.9 6.3 58 161-218 8-72 (316)
68 TIGR02100 glgX_debranch glycog 95.0 0.48 1E-05 52.0 14.4 58 161-218 188-265 (688)
69 PLN02803 beta-amylase 95.0 0.4 8.7E-06 50.0 12.8 134 160-311 110-255 (548)
70 PRK12568 glycogen branching en 94.9 1.4 2.9E-05 48.6 17.3 144 160-307 273-461 (730)
71 PF14871 GHL6: Hypothetical gl 94.6 0.57 1.2E-05 40.3 11.0 98 160-259 3-123 (132)
72 PLN02801 beta-amylase 94.5 0.39 8.5E-06 49.8 11.4 59 160-222 40-100 (517)
73 PLN00197 beta-amylase; Provisi 94.4 0.38 8.3E-06 50.3 11.1 59 160-222 130-190 (573)
74 PF07468 Agglutinin: Agglutini 94.1 0.57 1.2E-05 40.9 9.9 96 4-100 13-123 (153)
75 PLN02705 beta-amylase 94.0 0.47 1E-05 50.1 10.8 60 160-223 271-332 (681)
76 PLN02905 beta-amylase 94.0 1 2.2E-05 47.9 13.2 134 160-311 289-435 (702)
77 PRK14706 glycogen branching en 94.0 2.3 5E-05 46.4 16.6 144 160-308 171-358 (639)
78 PF14200 RicinB_lectin_2: Rici 94.0 0.43 9.3E-06 38.9 8.6 78 1-78 20-104 (105)
79 KOG2230 Predicted beta-mannosi 93.9 0.4 8.6E-06 50.1 9.9 150 159-338 359-524 (867)
80 PLN00196 alpha-amylase; Provis 93.4 0.26 5.7E-06 51.0 7.8 59 160-218 47-112 (428)
81 KOG0496 Beta-galactosidase [Ca 93.2 0.39 8.4E-06 51.2 8.8 57 160-219 52-109 (649)
82 PF01373 Glyco_hydro_14: Glyco 93.1 0.14 3.1E-06 51.8 5.2 127 160-306 19-150 (402)
83 PF02638 DUF187: Glycosyl hydr 93.1 1.2 2.7E-05 44.1 11.7 146 160-308 22-229 (311)
84 PLN02361 alpha-amylase 93.0 0.34 7.4E-06 49.7 7.9 64 153-218 27-96 (401)
85 PF01120 Alpha_L_fucos: Alpha- 92.4 1.6 3.5E-05 43.9 11.8 136 159-305 93-242 (346)
86 PF14200 RicinB_lectin_2: Rici 92.3 1.1 2.4E-05 36.5 8.7 71 31-103 4-80 (105)
87 PF12891 Glyco_hydro_44: Glyco 92.3 0.47 1E-05 44.8 7.1 60 251-310 109-181 (239)
88 TIGR02403 trehalose_treC alpha 92.1 0.47 1E-05 50.8 7.8 59 160-218 30-95 (543)
89 PRK10933 trehalose-6-phosphate 92.0 0.47 1E-05 50.8 7.7 58 161-219 37-102 (551)
90 COG3623 SgaU Putative L-xylulo 91.8 4.2 9.2E-05 38.2 12.6 71 193-276 91-161 (287)
91 PRK03705 glycogen debranching 91.8 0.4 8.7E-06 52.4 7.0 57 161-218 183-262 (658)
92 PRK09441 cytoplasmic alpha-amy 91.8 0.46 9.9E-06 50.0 7.3 58 161-218 26-101 (479)
93 TIGR02103 pullul_strch alpha-1 91.6 2.9 6.4E-05 47.2 13.5 104 196-311 402-528 (898)
94 PRK07379 coproporphyrinogen II 91.5 2.1 4.5E-05 44.0 11.6 123 157-303 112-248 (400)
95 TIGR02456 treS_nterm trehalose 91.4 0.59 1.3E-05 50.0 7.7 58 161-218 32-96 (539)
96 PRK05628 coproporphyrinogen II 91.0 2.8 6.1E-05 42.6 11.9 123 157-303 105-241 (375)
97 PRK05904 coproporphyrinogen II 90.8 3.4 7.3E-05 41.7 12.0 126 156-305 99-233 (353)
98 PRK08208 coproporphyrinogen II 90.7 2.1 4.5E-05 44.4 10.8 123 157-302 138-267 (430)
99 PRK06294 coproporphyrinogen II 90.5 3.7 8E-05 41.7 12.2 123 157-303 100-236 (370)
100 PRK09505 malS alpha-amylase; R 90.1 0.92 2E-05 49.7 7.8 58 161-218 234-312 (683)
101 PRK08599 coproporphyrinogen II 89.9 2.9 6.3E-05 42.4 10.9 123 156-302 96-232 (377)
102 cd02742 GH20_hexosaminidase Be 89.8 14 0.0003 36.4 15.2 144 160-308 19-192 (303)
103 PRK05799 coproporphyrinogen II 89.6 4.6 9.9E-05 41.0 12.1 124 156-303 95-232 (374)
104 PF04601 DUF569: Protein of un 89.5 1.8 3.9E-05 37.6 7.6 64 38-103 6-69 (142)
105 PRK13347 coproporphyrinogen II 89.4 2.8 6.1E-05 43.8 10.6 123 156-302 148-283 (453)
106 PRK14510 putative bifunctional 89.3 0.82 1.8E-05 53.5 7.0 64 160-223 190-275 (1221)
107 PF00167 FGF: Fibroblast growt 89.2 6.2 0.00013 33.2 10.7 90 5-101 9-101 (122)
108 PRK09058 coproporphyrinogen II 89.1 3.9 8.5E-05 42.7 11.4 123 157-303 160-297 (449)
109 PLN02784 alpha-amylase 88.9 1.2 2.6E-05 49.4 7.6 59 160-218 524-588 (894)
110 COG0635 HemN Coproporphyrinoge 88.9 5.7 0.00012 41.0 12.2 123 157-302 134-268 (416)
111 PRK05660 HemN family oxidoredu 88.8 4.8 0.0001 41.0 11.5 124 156-303 103-236 (378)
112 TIGR00539 hemN_rel putative ox 88.7 5.7 0.00012 40.1 12.0 122 156-301 96-227 (360)
113 PRK09249 coproporphyrinogen II 87.8 3.8 8.3E-05 42.8 10.3 122 157-302 148-282 (453)
114 COG0296 GlgB 1,4-alpha-glucan 87.8 1.3 2.8E-05 47.8 6.7 58 159-218 167-234 (628)
115 KOG0470 1,4-alpha-glucan branc 87.6 0.83 1.8E-05 49.4 5.1 61 158-218 256-331 (757)
116 PRK09057 coproporphyrinogen II 87.4 5.5 0.00012 40.5 10.9 122 157-302 101-235 (380)
117 PRK08446 coproporphyrinogen II 87.3 7.2 0.00016 39.3 11.6 124 156-303 94-224 (350)
118 COG0366 AmyA Glycosidases [Car 87.2 1.5 3.2E-05 46.0 6.8 59 161-219 33-98 (505)
119 TIGR01212 radical SAM protein, 87.1 7.8 0.00017 38.2 11.5 126 156-304 119-257 (302)
120 KOG2566 Beta-glucocerebrosidas 87.0 37 0.00081 34.4 16.7 228 168-418 135-407 (518)
121 TIGR02401 trehalose_TreY malto 86.9 2.1 4.6E-05 47.6 7.9 60 160-219 19-86 (825)
122 cd06565 GH20_GcnA-like Glycosy 85.9 30 0.00064 34.1 14.9 144 160-308 20-186 (301)
123 cd06564 GH20_DspB_LnbB-like Gl 85.9 19 0.00042 35.8 13.7 144 160-308 20-201 (326)
124 PLN03244 alpha-amylase; Provis 85.8 14 0.00031 41.0 13.2 113 195-308 438-586 (872)
125 PRK06582 coproporphyrinogen II 85.7 9 0.00019 39.2 11.4 124 157-303 108-243 (390)
126 cd06568 GH20_SpHex_like A subg 85.7 40 0.00087 33.6 15.8 135 160-300 21-189 (329)
127 cd06562 GH20_HexA_HexB-like Be 84.6 21 0.00046 35.9 13.3 146 160-307 21-209 (348)
128 PRK14511 maltooligosyl trehalo 84.1 3.5 7.5E-05 46.3 8.0 59 160-219 23-90 (879)
129 PRK08207 coproporphyrinogen II 83.1 12 0.00026 39.5 11.3 123 157-303 266-400 (488)
130 COG3589 Uncharacterized conser 81.2 3.4 7.3E-05 40.9 5.8 52 160-219 19-70 (360)
131 cd06563 GH20_chitobiase-like T 80.3 69 0.0015 32.3 15.3 147 160-308 21-226 (357)
132 TIGR00538 hemN oxygen-independ 80.0 8.4 0.00018 40.2 8.8 120 157-300 148-280 (455)
133 PRK08898 coproporphyrinogen II 79.9 18 0.00039 37.0 11.0 124 156-303 118-250 (394)
134 PRK14507 putative bifunctional 79.8 5.4 0.00012 48.0 7.8 59 160-219 761-828 (1693)
135 TIGR02455 TreS_stutzeri trehal 79.7 5.8 0.00013 42.9 7.4 60 160-219 77-151 (688)
136 PRK04302 triosephosphate isome 77.2 58 0.0013 30.4 12.8 108 160-311 75-183 (223)
137 PF14701 hDGE_amylase: glucano 76.4 21 0.00045 36.9 10.0 61 160-220 25-99 (423)
138 KOG0471 Alpha-amylase [Carbohy 74.2 5.8 0.00013 42.5 5.7 60 160-219 43-109 (545)
139 cd02875 GH18_chitobiase Chitob 72.6 38 0.00083 34.2 10.9 89 201-307 67-157 (358)
140 PF01261 AP_endonuc_2: Xylose 72.5 33 0.00071 30.8 9.7 129 160-307 30-164 (213)
141 PF01261 AP_endonuc_2: Xylose 71.6 5.2 0.00011 36.1 4.1 63 160-222 74-136 (213)
142 PRK09856 fructoselysine 3-epim 71.0 53 0.0012 31.3 11.2 95 194-307 86-181 (275)
143 PF00167 FGF: Fibroblast growt 70.9 26 0.00056 29.4 7.9 64 42-110 3-67 (122)
144 TIGR00433 bioB biotin syntheta 70.4 59 0.0013 31.5 11.5 125 157-308 120-248 (296)
145 PRK14565 triosephosphate isome 69.9 88 0.0019 29.7 12.0 132 160-321 75-209 (237)
146 KOG4518 Hydroxypyruvate isomer 69.8 71 0.0015 29.5 10.6 127 162-306 21-177 (264)
147 KOG3962 Predicted actin-bundli 69.5 16 0.00034 34.1 6.5 40 69-110 79-118 (246)
148 cd07938 DRE_TIM_HMGL 3-hydroxy 68.9 32 0.00069 33.4 9.1 63 159-221 75-137 (274)
149 cd06570 GH20_chitobiase-like_1 68.3 78 0.0017 31.3 11.8 58 160-220 21-90 (311)
150 PRK13209 L-xylulose 5-phosphat 68.2 22 0.00048 34.2 7.9 59 160-220 102-160 (283)
151 COG0276 HemH Protoheme ferro-l 67.9 58 0.0012 32.4 10.6 142 152-312 98-269 (320)
152 TIGR01531 glyc_debranch glycog 67.8 20 0.00043 42.4 8.3 70 136-218 123-205 (1464)
153 PRK12858 tagatose 1,6-diphosph 67.7 68 0.0015 32.2 11.3 59 161-223 110-168 (340)
154 COG1649 Uncharacterized protei 67.2 42 0.00091 34.6 9.8 146 160-308 67-272 (418)
155 cd02871 GH18_chitinase_D-like 66.9 90 0.002 30.7 12.0 95 197-307 59-154 (312)
156 COG3623 SgaU Putative L-xylulo 66.6 70 0.0015 30.3 10.1 108 160-296 21-142 (287)
157 TIGR01210 conserved hypothetic 66.2 8.5 0.00018 38.1 4.6 64 155-219 112-176 (313)
158 PF05913 DUF871: Bacterial pro 65.9 10 0.00023 38.3 5.1 53 160-220 17-69 (357)
159 TIGR01211 ELP3 histone acetylt 65.6 7 0.00015 41.6 4.0 64 154-219 200-263 (522)
160 cd00058 FGF Acidic and basic f 65.1 84 0.0018 26.5 11.3 89 6-101 8-99 (123)
161 cd07948 DRE_TIM_HCS Saccharomy 64.1 9 0.0002 36.9 4.2 63 158-220 72-134 (262)
162 PF07488 Glyco_hydro_67M: Glyc 63.7 41 0.0009 33.0 8.4 159 160-338 60-239 (328)
163 PF04055 Radical_SAM: Radical 62.6 12 0.00025 32.0 4.3 62 159-223 89-153 (166)
164 cd07939 DRE_TIM_NifV Streptomy 61.8 19 0.00042 34.4 6.0 60 159-218 71-130 (259)
165 cd06593 GH31_xylosidase_YicI Y 61.2 1.1E+02 0.0025 29.9 11.5 60 160-220 27-88 (308)
166 cd07937 DRE_TIM_PC_TC_5S Pyruv 61.0 41 0.00089 32.6 8.2 49 158-220 92-140 (275)
167 cd07944 DRE_TIM_HOA_like 4-hyd 60.9 40 0.00087 32.5 8.1 50 158-221 83-132 (266)
168 PRK09997 hydroxypyruvate isome 60.4 1.5E+02 0.0033 27.9 12.8 131 159-307 41-178 (258)
169 smart00791 Agglutinin Amaranth 60.4 1.1E+02 0.0024 26.3 10.1 90 5-100 14-111 (139)
170 smart00812 Alpha_L_fucos Alpha 60.2 2.1E+02 0.0044 29.3 14.6 139 159-311 83-236 (384)
171 TIGR03471 HpnJ hopanoid biosyn 60.2 22 0.00049 37.2 6.7 63 158-223 285-349 (472)
172 PF10566 Glyco_hydro_97: Glyco 60.0 19 0.00042 34.9 5.6 50 160-221 109-158 (273)
173 PRK13210 putative L-xylulose 5 60.0 19 0.0004 34.6 5.7 59 160-220 97-155 (284)
174 TIGR03234 OH-pyruv-isom hydrox 59.5 36 0.00079 32.1 7.5 60 160-221 87-146 (254)
175 PLN02746 hydroxymethylglutaryl 58.3 25 0.00055 35.4 6.3 62 159-220 123-184 (347)
176 TIGR00542 hxl6Piso_put hexulos 57.8 23 0.0005 34.0 5.9 59 160-220 97-155 (279)
177 TIGR00542 hxl6Piso_put hexulos 57.8 1.2E+02 0.0027 28.9 11.0 148 165-337 60-212 (279)
178 PTZ00333 triosephosphate isome 57.7 1.4E+02 0.0031 28.6 11.1 52 160-219 79-130 (255)
179 PRK07094 biotin synthase; Prov 57.4 71 0.0015 31.5 9.4 128 158-310 127-258 (323)
180 PRK06256 biotin synthase; Vali 57.3 84 0.0018 31.2 10.0 127 157-310 149-279 (336)
181 cd06545 GH18_3CO4_chitinase Th 57.1 1.5E+02 0.0032 28.1 11.3 85 198-298 46-131 (253)
182 cd06601 GH31_lyase_GLase GLase 57.1 1.6E+02 0.0034 29.5 11.7 106 161-275 28-135 (332)
183 PRK09997 hydroxypyruvate isome 56.9 22 0.00048 33.8 5.5 59 160-220 88-146 (258)
184 TIGR02090 LEU1_arch isopropylm 56.2 26 0.00056 35.5 6.1 61 159-219 73-133 (363)
185 PRK04161 tagatose 1,6-diphosph 55.1 20 0.00044 35.5 4.9 62 158-223 108-169 (329)
186 PF03659 Glyco_hydro_71: Glyco 54.9 84 0.0018 32.2 9.5 49 160-219 20-68 (386)
187 PRK05692 hydroxymethylglutaryl 54.8 16 0.00034 35.8 4.1 61 159-219 81-141 (287)
188 cd06547 GH85_ENGase Endo-beta- 54.8 54 0.0012 32.9 8.0 97 203-307 51-147 (339)
189 cd00019 AP2Ec AP endonuclease 54.7 24 0.00052 33.9 5.4 114 160-295 88-204 (279)
190 cd02874 GH18_CFLE_spore_hydrol 54.7 60 0.0013 31.9 8.3 89 201-299 48-137 (313)
191 cd00842 MPP_ASMase acid sphing 54.0 88 0.0019 30.3 9.3 80 145-224 135-226 (296)
192 TIGR02660 nifV_homocitr homoci 53.6 31 0.00066 35.0 6.1 60 159-218 74-133 (365)
193 PRK11858 aksA trans-homoaconit 53.3 34 0.00074 34.8 6.4 60 159-218 77-136 (378)
194 PRK13210 putative L-xylulose 5 53.3 1.8E+02 0.004 27.6 11.4 95 163-272 58-155 (284)
195 cd03174 DRE_TIM_metallolyase D 53.1 16 0.00035 34.7 3.9 60 160-219 77-136 (265)
196 PRK09936 hypothetical protein; 52.0 1.4E+02 0.003 29.3 9.8 136 160-308 41-180 (296)
197 PRK12399 tagatose 1,6-diphosph 51.8 24 0.00052 34.9 4.8 62 158-223 106-167 (324)
198 PLN02449 ferrochelatase 50.6 1.3E+02 0.0027 31.9 10.1 142 153-312 188-364 (485)
199 PRK13209 L-xylulose 5-phosphat 50.5 2.3E+02 0.0049 27.0 11.6 118 195-337 96-217 (283)
200 PRK00979 tetrahydromethanopter 50.3 1.3E+02 0.0029 29.7 9.6 86 160-275 136-231 (308)
201 COG3664 XynB Beta-xylosidase [ 50.2 1.6E+02 0.0034 30.3 10.2 124 196-337 38-169 (428)
202 PF10566 Glyco_hydro_97: Glyco 50.2 51 0.0011 32.0 6.7 121 160-308 35-157 (273)
203 cd07945 DRE_TIM_CMS Leptospira 50.1 17 0.00037 35.4 3.5 61 160-220 77-137 (280)
204 TIGR02026 BchE magnesium-proto 49.9 42 0.0009 35.5 6.7 57 159-218 286-343 (497)
205 TIGR01232 lacD tagatose 1,6-di 49.5 25 0.00054 34.8 4.5 61 159-223 108-168 (325)
206 COG3280 TreY Maltooligosyl tre 49.3 29 0.00063 38.2 5.2 67 136-219 11-89 (889)
207 smart00791 Agglutinin Amaranth 49.3 1E+02 0.0023 26.5 7.6 68 41-111 7-76 (139)
208 PRK07535 methyltetrahydrofolat 48.2 2E+02 0.0044 27.6 10.6 87 160-267 106-195 (261)
209 PRK09989 hypothetical protein; 48.1 2.4E+02 0.0053 26.5 11.5 130 160-307 43-178 (258)
210 PF07468 Agglutinin: Agglutini 48.0 1.3E+02 0.0027 26.6 8.1 63 42-104 8-74 (153)
211 cd06542 GH18_EndoS-like Endo-b 47.5 2.4E+02 0.0052 26.6 11.0 99 196-307 49-151 (255)
212 KOG3770 Acid sphingomyelinase 47.5 1.8E+02 0.0039 31.3 10.7 107 148-267 284-405 (577)
213 PRK08195 4-hyroxy-2-oxovalerat 46.8 91 0.002 31.2 8.2 49 159-221 90-138 (337)
214 cd00419 Ferrochelatase_C Ferro 46.3 94 0.002 26.6 7.2 84 210-311 17-102 (135)
215 COG1099 Predicted metal-depend 46.3 63 0.0014 30.4 6.3 118 159-308 13-134 (254)
216 PF07555 NAGidase: beta-N-acet 46.2 62 0.0014 32.0 6.8 57 160-220 18-78 (306)
217 smart00442 FGF Acidic and basi 46.2 1.8E+02 0.004 24.5 11.4 90 5-101 11-103 (126)
218 TIGR03217 4OH_2_O_val_ald 4-hy 45.9 1E+02 0.0022 30.8 8.4 48 159-220 89-136 (333)
219 PRK09856 fructoselysine 3-epim 45.7 37 0.00081 32.4 5.2 59 160-220 93-151 (275)
220 PRK13397 3-deoxy-7-phosphohept 45.3 85 0.0018 30.1 7.3 57 161-221 33-89 (250)
221 cd06589 GH31 The enzymes of gl 44.9 2.3E+02 0.0051 27.0 10.6 57 161-220 28-88 (265)
222 PF00728 Glyco_hydro_20: Glyco 44.9 35 0.00075 34.0 4.9 146 160-310 21-219 (351)
223 PF04343 DUF488: Protein of un 44.7 35 0.00077 28.5 4.2 27 200-226 2-28 (122)
224 smart00518 AP2Ec AP endonuclea 44.6 2.3E+02 0.005 26.8 10.5 63 194-272 80-142 (273)
225 PLN02849 beta-glucosidase 44.0 21 0.00045 37.9 3.2 51 367-417 382-441 (503)
226 TIGR03356 BGL beta-galactosida 43.9 24 0.00052 36.6 3.7 56 367-423 334-399 (427)
227 TIGR03234 OH-pyruv-isom hydrox 43.4 2.8E+02 0.0061 25.9 12.4 130 160-307 41-177 (254)
228 PF00232 Glyco_hydro_1: Glycos 43.3 13 0.00028 38.9 1.6 65 367-432 352-426 (455)
229 COG1082 IolE Sugar phosphate i 43.2 2.2E+02 0.0048 26.7 10.2 156 160-338 48-208 (274)
230 COG1441 MenC O-succinylbenzoat 43.0 24 0.00053 33.1 3.1 25 193-217 239-263 (321)
231 TIGR01305 GMP_reduct_1 guanosi 42.5 79 0.0017 31.6 6.8 72 146-217 140-218 (343)
232 PRK09389 (R)-citramalate synth 42.1 57 0.0012 34.5 6.2 61 160-220 76-136 (488)
233 PF02879 PGM_PMM_II: Phosphogl 42.0 45 0.00099 26.8 4.4 83 196-307 3-91 (104)
234 COG0641 AslB Arylsulfatase reg 41.8 4E+02 0.0086 27.2 13.7 121 157-300 101-228 (378)
235 PLN02814 beta-glucosidase 41.7 24 0.00051 37.5 3.3 51 367-417 384-441 (504)
236 cd07941 DRE_TIM_LeuA3 Desulfob 41.4 35 0.00075 33.0 4.2 59 159-217 80-138 (273)
237 PRK14567 triosephosphate isome 41.2 3.3E+02 0.0071 26.2 10.6 52 160-219 75-126 (253)
238 COG2108 Uncharacterized conser 41.2 81 0.0018 31.3 6.5 56 157-223 121-176 (353)
239 cd02872 GH18_chitolectin_chito 40.0 3.5E+02 0.0077 26.9 11.4 95 197-307 55-159 (362)
240 PLN02389 biotin synthase 39.6 2.7E+02 0.0059 28.4 10.4 154 157-336 175-333 (379)
241 cd07947 DRE_TIM_Re_CS Clostrid 38.7 37 0.0008 33.1 3.9 61 158-218 75-135 (279)
242 KOG1643 Triosephosphate isomer 38.4 3.3E+02 0.0072 25.3 11.9 139 160-323 76-224 (247)
243 cd00311 TIM Triosephosphate is 38.1 3.6E+02 0.0078 25.6 13.1 52 160-219 74-125 (242)
244 cd06522 GH25_AtlA-like AtlA is 38.1 3E+02 0.0066 24.8 13.3 122 153-307 8-130 (192)
245 PRK05301 pyrroloquinoline quin 37.8 57 0.0012 33.0 5.3 59 157-218 101-161 (378)
246 PRK09240 thiH thiamine biosynt 37.6 2.4E+02 0.0052 28.6 9.7 133 157-309 160-299 (371)
247 PF09270 BTD: Beta-trefoil DNA 37.1 62 0.0014 28.6 4.6 37 6-45 22-66 (158)
248 cd06591 GH31_xylosidase_XylS X 36.5 3.8E+02 0.0083 26.4 10.8 59 161-220 28-88 (319)
249 COG3422 Uncharacterized conser 35.7 43 0.00093 24.4 2.7 24 75-98 4-27 (59)
250 cd07940 DRE_TIM_IPMS 2-isoprop 35.5 85 0.0018 30.1 5.9 59 159-217 71-133 (268)
251 TIGR02109 PQQ_syn_pqqE coenzym 35.5 69 0.0015 32.0 5.4 60 157-219 92-153 (358)
252 COG5016 Pyruvate/oxaloacetate 35.5 50 0.0011 33.8 4.2 53 152-218 93-145 (472)
253 PRK00278 trpC indole-3-glycero 35.2 1.2E+02 0.0027 29.0 6.8 48 160-221 123-170 (260)
254 PRK13511 6-phospho-beta-galact 34.9 51 0.0011 34.6 4.5 50 368-417 365-426 (469)
255 PLN02998 beta-glucosidase 34.8 35 0.00075 36.2 3.2 51 367-417 389-446 (497)
256 PRK13398 3-deoxy-7-phosphohept 34.3 1.5E+02 0.0033 28.6 7.3 58 160-221 44-101 (266)
257 TIGR02171 Fb_sc_TIGR02171 Fibr 34.2 1.3E+02 0.0028 34.2 7.4 70 194-276 804-876 (912)
258 PF04273 DUF442: Putative phos 34.1 32 0.00069 28.5 2.2 46 158-214 15-60 (110)
259 COG1306 Uncharacterized conser 34.0 56 0.0012 32.1 4.1 60 160-219 80-145 (400)
260 cd02068 radical_SAM_B12_BD B12 34.0 2.1E+02 0.0046 23.6 7.5 46 261-316 38-83 (127)
261 COG0134 TrpC Indole-3-glycerol 33.7 72 0.0016 30.6 4.8 50 158-221 117-166 (254)
262 PRK14334 (dimethylallyl)adenos 33.6 4.3E+02 0.0094 27.3 11.1 55 156-215 230-289 (440)
263 cd02877 GH18_hevamine_XipI_cla 33.6 4.6E+02 0.0099 25.5 10.8 26 197-222 58-83 (280)
264 TIGR01233 lacG 6-phospho-beta- 32.8 40 0.00087 35.4 3.3 47 371-417 368-424 (467)
265 PF00682 HMGL-like: HMGL-like 32.7 71 0.0015 29.8 4.7 61 159-219 65-129 (237)
266 PF13378 MR_MLE_C: Enolase C-t 32.5 1.4E+02 0.003 24.1 5.9 47 157-216 4-51 (111)
267 TIGR02631 xylA_Arthro xylose i 32.4 4.5E+02 0.0096 26.8 10.7 91 195-299 112-205 (382)
268 TIGR02351 thiH thiazole biosyn 32.1 2.9E+02 0.0063 27.9 9.3 133 157-310 159-299 (366)
269 PRK00865 glutamate racemase; P 32.1 1.9E+02 0.0041 27.7 7.6 59 249-308 18-76 (261)
270 PF10035 DUF2179: Uncharacteri 31.4 49 0.0011 23.3 2.6 22 287-308 28-49 (55)
271 cd06603 GH31_GANC_GANAB_alpha 31.3 5.3E+02 0.012 25.6 11.6 59 160-221 27-87 (339)
272 TIGR02867 spore_II_P stage II 31.2 1.5E+02 0.0033 27.2 6.4 55 160-221 37-92 (196)
273 KOG1066 Glucosidase II catalyt 30.9 1.7E+02 0.0037 32.3 7.4 118 156-276 367-513 (915)
274 PF01041 DegT_DnrJ_EryC1: DegT 30.7 95 0.0021 31.1 5.5 28 197-224 126-153 (363)
275 TIGR02666 moaA molybdenum cofa 30.5 1.7E+02 0.0036 29.0 7.2 60 160-222 102-164 (334)
276 PRK14047 putative methyltransf 30.4 1.4E+02 0.003 29.4 6.2 65 152-223 128-201 (310)
277 PRK10673 acyl-CoA esterase; Pr 30.2 1.4E+02 0.0031 27.3 6.4 60 252-311 32-91 (255)
278 TIGR01114 mtrH N5-methyltetrah 29.6 1.5E+02 0.0032 29.3 6.2 77 138-223 116-201 (314)
279 PRK09613 thiH thiamine biosynt 29.5 3.8E+02 0.0081 28.3 9.7 131 158-309 178-318 (469)
280 cd00161 RICIN Ricin-type beta- 29.5 2.8E+02 0.006 21.7 9.0 74 5-81 9-85 (124)
281 cd07943 DRE_TIM_HOA 4-hydroxy- 29.1 1.5E+02 0.0033 28.2 6.5 47 159-219 87-133 (263)
282 COG1137 YhbG ABC-type (unclass 28.9 5E+02 0.011 24.4 10.2 151 41-222 22-200 (243)
283 cd06569 GH20_Sm-chitobiase-lik 28.7 1.6E+02 0.0034 30.8 6.8 24 196-219 95-118 (445)
284 TIGR01125 MiaB-like tRNA modif 28.7 4.5E+02 0.0098 27.1 10.3 59 157-218 229-292 (430)
285 TIGR03128 RuMP_HxlA 3-hexulose 28.6 1.7E+02 0.0037 26.5 6.5 44 162-220 68-111 (206)
286 COG2945 Predicted hydrolase of 28.5 84 0.0018 29.0 4.1 55 153-211 43-99 (210)
287 cd04502 SGNH_hydrolase_like_7 28.4 2.8E+02 0.006 24.0 7.6 45 262-307 50-95 (171)
288 COG0293 FtsJ 23S rRNA methylas 28.4 1.4E+02 0.003 27.7 5.6 42 203-271 33-79 (205)
289 PRK12331 oxaloacetate decarbox 28.2 1.1E+02 0.0025 31.9 5.7 47 158-218 97-143 (448)
290 KOG0564 5,10-methylenetetrahyd 28.2 84 0.0018 33.0 4.5 58 196-264 90-149 (590)
291 PRK05664 threonine-phosphate d 27.6 1.5E+02 0.0032 29.2 6.2 56 163-220 100-166 (330)
292 smart00729 Elp3 Elongator prot 27.5 95 0.0021 27.5 4.5 59 157-218 97-157 (216)
293 PRK09852 cryptic 6-phospho-bet 27.1 85 0.0018 33.1 4.5 48 370-417 365-423 (474)
294 TIGR03849 arch_ComA phosphosul 27.1 1.8E+02 0.0039 27.6 6.2 49 160-220 74-122 (237)
295 PRK12595 bifunctional 3-deoxy- 27.0 2.1E+02 0.0045 29.0 7.1 58 160-221 135-192 (360)
296 PF02007 MtrH: Tetrahydrometha 26.8 1.9E+02 0.004 28.4 6.3 68 149-223 120-196 (296)
297 PF05013 FGase: N-formylglutam 26.3 1.2E+02 0.0027 28.1 5.1 73 197-276 116-193 (222)
298 PRK13361 molybdenum cofactor b 26.0 2.4E+02 0.0051 27.9 7.3 55 161-218 105-161 (329)
299 cd00058 FGF Acidic and basic f 25.9 3.2E+02 0.0068 23.0 7.0 54 48-106 7-61 (123)
300 KOG4589 Cell division protein 25.7 1.5E+02 0.0032 27.3 5.1 36 213-275 71-108 (232)
301 PRK13957 indole-3-glycerol-pho 25.6 1.7E+02 0.0037 27.9 5.9 50 158-221 112-161 (247)
302 PRK09589 celA 6-phospho-beta-g 25.5 95 0.0021 32.7 4.5 53 370-423 367-431 (476)
303 TIGR03235 DNA_S_dndA cysteine 25.5 96 0.0021 30.7 4.5 58 164-221 106-178 (353)
304 PF07454 SpoIIP: Stage II spor 25.3 2E+02 0.0042 27.9 6.3 55 160-221 114-169 (268)
305 COG5483 Uncharacterized conser 25.3 1E+02 0.0022 29.1 4.1 29 200-228 13-41 (289)
306 PF14883 GHL13: Hypothetical g 25.2 6.6E+02 0.014 24.7 12.2 137 160-301 20-186 (294)
307 PF01212 Beta_elim_lyase: Beta 25.0 69 0.0015 31.3 3.2 23 196-218 143-165 (290)
308 PRK15014 6-phospho-beta-glucos 24.9 1.1E+02 0.0024 32.2 4.9 48 370-417 368-427 (477)
309 COG3661 AguA Alpha-glucuronida 24.8 8.2E+02 0.018 25.6 11.3 98 160-271 186-286 (684)
310 PF01341 Glyco_hydro_6: Glycos 24.7 4.2E+02 0.009 26.1 8.5 103 196-309 45-164 (298)
311 PRK14331 (dimethylallyl)adenos 24.7 7.2E+02 0.016 25.6 10.9 63 158-223 240-308 (437)
312 TIGR01302 IMP_dehydrog inosine 24.7 2.5E+02 0.0055 29.2 7.5 60 157-217 273-333 (450)
313 COG2100 Predicted Fe-S oxidore 24.6 2.4E+02 0.0053 28.2 6.7 132 156-311 200-341 (414)
314 PF00218 IGPS: Indole-3-glycer 24.5 2.6E+02 0.0056 26.9 6.9 49 158-220 119-167 (254)
315 PF08373 RAP: RAP domain; Int 24.0 42 0.0009 23.8 1.1 20 163-182 24-43 (58)
316 cd03751 proteasome_alpha_type_ 23.9 54 0.0012 30.4 2.1 53 113-165 135-187 (212)
317 TIGR03279 cyano_FeS_chp putati 23.8 2.3E+02 0.005 29.5 6.8 95 157-271 125-220 (433)
318 PF01791 DeoC: DeoC/LacD famil 23.8 55 0.0012 30.7 2.2 53 160-217 79-131 (236)
319 TIGR01370 cysRS possible cyste 23.7 6.6E+02 0.014 24.9 9.8 46 264-309 168-214 (315)
320 PRK10076 pyruvate formate lyas 23.6 2.8E+02 0.006 25.8 6.8 21 196-216 191-211 (213)
321 PRK14340 (dimethylallyl)adenos 23.6 2E+02 0.0044 29.9 6.6 60 157-219 242-306 (445)
322 PLN02607 1-aminocyclopropane-1 23.4 2E+02 0.0042 30.0 6.4 24 196-219 218-241 (447)
323 PF05270 AbfB: Alpha-L-arabino 23.4 4.9E+02 0.011 22.6 8.1 62 43-106 4-73 (142)
324 PF00224 PK: Pyruvate kinase, 23.3 1.3E+02 0.0028 30.3 4.9 53 159-221 16-70 (348)
325 PF07071 DUF1341: Protein of u 23.2 2.3E+02 0.005 26.3 5.9 43 160-214 138-180 (218)
326 smart00442 FGF Acidic and basi 23.2 4E+02 0.0087 22.4 7.2 60 43-107 6-66 (126)
327 PLN02623 pyruvate kinase 23.1 87 0.0019 33.8 3.7 53 159-221 124-179 (581)
328 PRK14327 (dimethylallyl)adenos 23.1 8.4E+02 0.018 25.9 11.1 57 157-218 306-369 (509)
329 PRK10425 DNase TatD; Provision 22.9 4.4E+02 0.0095 25.2 8.3 44 371-414 85-128 (258)
330 COG1692 Calcineurin-like phosp 22.9 1.7E+02 0.0037 28.0 5.1 29 194-222 126-154 (266)
331 TIGR00109 hemH ferrochelatase. 22.7 7.5E+02 0.016 24.4 10.4 99 195-311 167-271 (322)
332 COG1167 ARO8 Transcriptional r 22.7 2.3E+02 0.005 29.6 6.8 59 160-219 190-268 (459)
333 PLN02429 triosephosphate isome 22.7 7.7E+02 0.017 24.5 11.7 52 160-219 137-188 (315)
334 PRK12677 xylose isomerase; Pro 22.6 8.3E+02 0.018 24.9 10.6 72 195-275 111-185 (384)
335 PF02208 Sorb: Sorbin homologo 22.5 89 0.0019 21.5 2.3 37 263-299 4-40 (47)
336 cd06600 GH31_MGAM-like This fa 22.4 7.5E+02 0.016 24.3 12.0 59 160-221 27-87 (317)
337 PRK05826 pyruvate kinase; Prov 22.4 1.8E+02 0.004 30.5 5.9 53 159-221 18-72 (465)
338 PRK09593 arb 6-phospho-beta-gl 22.3 1.3E+02 0.0028 31.7 4.8 48 370-417 368-427 (478)
339 KOG0256 1-aminocyclopropane-1- 22.2 2.7E+02 0.0058 28.8 6.6 53 160-219 214-267 (471)
340 cd01299 Met_dep_hydrolase_A Me 22.0 3.1E+02 0.0068 26.8 7.4 56 160-216 123-178 (342)
341 PF13199 Glyco_hydro_66: Glyco 22.0 2.5E+02 0.0055 30.2 6.9 57 160-217 121-189 (559)
342 PLN02461 Probable pyruvate kin 22.0 2.1E+02 0.0046 30.4 6.3 53 159-221 35-89 (511)
343 COG1501 Alpha-glucosidases, fa 21.9 9.1E+02 0.02 27.3 11.5 149 157-307 276-462 (772)
344 PRK11449 putative deoxyribonuc 21.8 5.6E+02 0.012 24.4 8.8 37 371-407 91-127 (258)
345 TIGR03551 F420_cofH 7,8-dideme 21.8 5.4E+02 0.012 25.6 9.0 160 158-337 139-310 (343)
346 cd04726 KGPDC_HPS 3-Keto-L-gul 21.7 2.8E+02 0.0061 24.8 6.5 45 162-221 69-113 (202)
347 PF01619 Pro_dh: Proline dehyd 21.6 1.7E+02 0.0036 28.9 5.2 25 196-220 90-114 (313)
348 PRK05839 hypothetical protein; 21.5 2.6E+02 0.0055 28.1 6.7 24 196-219 173-196 (374)
349 cd06602 GH31_MGAM_SI_GAA This 21.4 8.1E+02 0.018 24.3 12.8 59 160-221 27-89 (339)
350 PLN02763 hydrolase, hydrolyzin 21.3 1.3E+03 0.029 26.8 13.3 54 163-219 207-262 (978)
351 PF03992 ABM: Antibiotic biosy 21.2 2.6E+02 0.0057 20.2 5.2 33 244-276 14-47 (78)
352 cd00019 AP2Ec AP endonuclease 21.2 6.3E+02 0.014 23.9 9.1 94 194-307 81-176 (279)
353 cd06598 GH31_transferase_CtsZ 21.2 7.9E+02 0.017 24.1 10.4 62 160-221 27-93 (317)
354 PRK13125 trpA tryptophan synth 21.0 2.7E+02 0.0059 26.3 6.3 126 162-336 93-219 (244)
355 PF02679 ComA: (2R)-phospho-3- 20.8 2.6E+02 0.0056 26.7 6.0 49 159-219 86-134 (244)
356 PF02310 B12-binding: B12 bind 20.8 2.3E+02 0.005 22.9 5.2 49 261-318 50-98 (121)
357 PRK07807 inosine 5-monophospha 20.7 2.8E+02 0.0061 29.2 6.9 60 158-217 277-336 (479)
358 PLN02681 proline dehydrogenase 20.7 2.8E+02 0.0061 29.0 6.9 26 195-220 217-242 (455)
359 PRK13745 anaerobic sulfatase-m 20.6 9.1E+02 0.02 24.6 12.7 60 156-216 111-171 (412)
360 COG3684 LacD Tagatose-1,6-bisp 20.6 1.2E+02 0.0026 29.2 3.6 59 160-223 114-172 (306)
361 cd00288 Pyruvate_Kinase Pyruva 20.6 2.4E+02 0.0052 29.8 6.3 53 159-221 16-70 (480)
362 PRK05096 guanosine 5'-monophos 20.4 3.3E+02 0.0071 27.4 6.8 60 158-217 160-219 (346)
363 TIGR00067 glut_race glutamate 20.2 4.4E+02 0.0096 25.0 7.6 59 249-308 11-70 (251)
364 PRK06247 pyruvate kinase; Prov 20.1 2.6E+02 0.0055 29.6 6.4 53 159-221 19-73 (476)
365 PRK14012 cysteine desulfurase; 20.1 1.8E+02 0.004 29.4 5.3 29 195-223 158-186 (404)
366 TIGR01579 MiaB-like-C MiaB-lik 20.0 9.3E+02 0.02 24.5 11.6 60 157-219 232-296 (414)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=4.6e-35 Score=284.03 Aligned_cols=248 Identities=29% Similarity=0.422 Sum_probs=174.9
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~ 237 (436)
+++++|+.|+++|+|+|||||.|..+.++.++..+.+..+++||++|++|+++||+||||+|..|+..++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~-------- 93 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGD-------- 93 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTS--------
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc--------
Confidence 889999999999999999999986665555544566789999999999999999999999999865421111
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC-------hhHHHHHHHHHHHHHHhhCCCeEEEEeCC
Q 013777 238 QEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYVIMSNR 309 (436)
Q Consensus 238 ~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~Viv~~~ 309 (436)
.... +...+.+.++|+.||+||++++.+++|||+|||...... .+.+.+++++++++||+++|+++|++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~ 173 (281)
T PF00150_consen 94 GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGG 173 (281)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEH
T ss_pred ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCC
Confidence 1111 345667788999999999999999999999999974332 37789999999999999999999999852
Q ss_pred -CCCCChhh-hhccC-CCCCcEEEEEeecCcCCCCCCCC-ChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccCCCC
Q 013777 310 -LGPADHKE-LLSFA-SGLSRVVIDVHYYNLFSNNFNGL-NVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVK 385 (436)
Q Consensus 310 -~~~~~~~~-~~~~~-~~~~nvv~~~H~Y~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~~~~ 385 (436)
|+ ..... ....+ ....+++|++|.|.++....... ........+........... ...+.|++|||||......
T Consensus 174 ~~~-~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 174 GWG-ADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWA-KKNGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHH-TBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHH-HHTTSEEEEEEEESSTTTS
T ss_pred ccc-cccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHH-HHcCCeEEEeCcCCcCCCC
Confidence 33 22222 22232 24789999999999764211111 11111222222223333333 3445679999999863211
Q ss_pred CcCHHHHHHHHHHHHHHHccCCCcEEEEceecCC
Q 013777 386 DASKQDYQRFANAQLDVYGRATFGWAYWAHKCEA 419 (436)
Q Consensus 386 ~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~~ 419 (436)
. ...++..+.++.+++.++||+||+||.++
T Consensus 252 ~----~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 252 N----GSTDYADAWLDYLEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp C----HHHHHHHHHHHHHHHTTCEEEECEESSSS
T ss_pred C----cCHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 1 23344444477788889999999999863
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=255.09 Aligned_cols=296 Identities=29% Similarity=0.478 Sum_probs=204.9
Q ss_pred cccchhhhhccCcChhhHHHHHhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCC-CCCCcc--chHHHHHHHHHHH
Q 013777 131 LRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVG--GSSKVLDNAFDWA 207 (436)
Q Consensus 131 ~~~e~~~~~~~G~~~a~~~~~~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~-~~~~~~--~~l~~ld~~v~~a 207 (436)
+.++...+..+|...+...++.||.+++++++|..|+++|||+||||++||.+ .+.. ..|+.. ..+.+||++|+||
T Consensus 47 ~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a 125 (407)
T COG2730 47 LVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWA 125 (407)
T ss_pred eecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHH
Confidence 45566667777877888899999999999999999999999999999999987 3322 345543 5677999999999
Q ss_pred HHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHH
Q 013777 208 EKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSY 287 (436)
Q Consensus 208 ~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~ 287 (436)
+++||+|+||+|.+||++++.++++..+.... ...+.+++++.|++||.||++.+.|+++|++|||+. -...+.|...
T Consensus 126 ~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~~ 203 (407)
T COG2730 126 KKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKE-ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNGG 203 (407)
T ss_pred HhcCeeEEEEecccCCCCCCcCcccccccccc-cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccccc
Confidence 99999999999999999999999986655443 567889999999999999999999999999999995 1223445555
Q ss_pred HHHHHHHHH-hhCCCe---EEEEeCC-CCC---CChhhh-----------hc-cC-CC---CCcEEEEEeecCcCC---C
Q 013777 288 YKAGYDAVR-KYTSTA---YVIMSNR-LGP---ADHKEL-----------LS-FA-SG---LSRVVIDVHYYNLFS---N 340 (436)
Q Consensus 288 ~~~~~~aIR-~~~p~~---~Viv~~~-~~~---~~~~~~-----------~~-~~-~~---~~nvv~~~H~Y~~~~---~ 340 (436)
..++++.|| +....+ +|.+++. +.. .....+ .. +. .. ....+++.|.|.+.. .
T Consensus 204 ~~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 283 (407)
T COG2730 204 DDEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGG 283 (407)
T ss_pred hHHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCC
Confidence 577888885 444444 3444321 111 000000 00 11 12 234455555553211 0
Q ss_pred CCC---CCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccCC-C----CCcCHHHHHHHHHHHHHHHccCCCcEEE
Q 013777 341 NFN---GLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-V----KDASKQDYQRFANAQLDVYGRATFGWAY 412 (436)
Q Consensus 341 ~~~---~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~~-~----~~~~~~~~~~~~~~q~~~~~~~~~Gw~~ 412 (436)
.+. ..+..+. .+..+...+....+.++.++++||||...+ . .....+..+.++..+.+++.. ..+|.+
T Consensus 284 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~ 359 (407)
T COG2730 284 SWTVGGEFDLAET---DCAIWLNYVGHGARKNGYPTVIGEFGGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWIN 359 (407)
T ss_pred CCCccCCcccccc---cceeeecceeecccccceeeeeccccCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEe
Confidence 011 1111111 111222233333345677899999998773 1 245667788999999999996 899999
Q ss_pred EceecC-CCCCChHHHHhCCCc
Q 013777 413 WAHKCE-ANHWSLKWMIENGYI 433 (436)
Q Consensus 413 W~~k~~-~~~Ws~~~~~~~g~~ 433 (436)
|+++.+ ...|+++.....+.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ 381 (407)
T COG2730 360 NPWSGGNDTGYDIEDDINLGLF 381 (407)
T ss_pred ecccCCCCCccchhhcchhhcc
Confidence 999997 478888776665544
No 3
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.75 E-value=1.4e-17 Score=141.36 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=92.3
Q ss_pred CCcccccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEE
Q 013777 1 MSTKFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVR 80 (436)
Q Consensus 1 ~s~~~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~ 80 (436)
||. +|||||+|.+| ..|.|||+.+++||+|+|.+.++++++||+.||+||+++.. +.|.|+++ ++++|+|++..
T Consensus 7 rs~-~gkyl~~~~~g-~~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~~---g~l~~~~~-~~~~e~F~~e~ 80 (119)
T cd00257 7 RSV-NGRYLSAEAGG-DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADSD---GGVQLEGH-PNADCRFTLEF 80 (119)
T ss_pred EEc-CCCEEEEeccC-CEEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEECC---CCEEecCC-CCCCcEEEEEE
Confidence 466 99999999988 58999999999999999999999999999999999999873 35899999 99999999998
Q ss_pred cCCCCcceEEeccCCceEEEeeCeEEEcCCCC
Q 013777 81 KDGDSSRVRLSASNGMFIQAISETRLTADYGS 112 (436)
Q Consensus 81 ~~~~~~~v~i~~~nG~~lq~~~~~~v~a~~~~ 112 (436)
.+++ .+.||+.||+||.++....+.++...
T Consensus 81 ~~~g--~~al~~~~G~yl~~~~~g~l~~~~~~ 110 (119)
T cd00257 81 HGDG--KWALRAENGRYLGGDGSGTLKASSET 110 (119)
T ss_pred CCCC--eEEEEcCCCCEEeecCCCeEEEecCC
Confidence 7644 68999999999999877777777653
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.62 E-value=3.1e-14 Score=140.11 Aligned_cols=226 Identities=22% Similarity=0.330 Sum_probs=134.3
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC-----CCCCCCCCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA-----APGSQNGNEHSA 232 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~-----~pg~qng~~~sg 232 (436)
..++-|+.||+.|+|+|||-+ +.+|...+ -..++...++.+.|+++||+|+||+|- .||.|.
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRv----wv~P~~~g---~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~------ 91 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRV----WVNPYDGG---YNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN------ 91 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-----SS-TTTT---TTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B------
T ss_pred CCCCHHHHHHhcCCCeEEEEe----ccCCcccc---cCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC------
Confidence 347889999999999999977 34554311 136788888899999999999999994 455543
Q ss_pred CCCCCCCCC----hhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCC-------CCCCChhHHHHHHHHHHHHHHhhCC
Q 013777 233 TRDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINEPL-------APGVALDTLKSYYKAGYDAVRKYTS 300 (436)
Q Consensus 233 ~~~~~~~w~----~~~~~~~~~~~~~lA~ry~~~~-~v~g~eL~NEP~-------~~~~~~~~~~~~~~~~~~aIR~~~p 300 (436)
-+..|. +...+...++-+.+.+.+++.- ..-.+++-||-. ....+.+.+.++...++++||+.+|
T Consensus 92 ---~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p 168 (332)
T PF07745_consen 92 ---KPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP 168 (332)
T ss_dssp -----TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS
T ss_pred ---CCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 234565 2222333334444444444432 233478999943 3345678899999999999999999
Q ss_pred CeEEEEeCCCCCCCh---hhhhccC--CCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEe
Q 013777 301 TAYVIMSNRLGPADH---KELLSFA--SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFV 375 (436)
Q Consensus 301 ~~~Viv~~~~~~~~~---~~~~~~~--~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~v 375 (436)
+..|+++-.-+ .+. ..|++.. .+.+-.|+.+++|+.|+. .++.+.. .+..+.++.+++|+|
T Consensus 169 ~~kV~lH~~~~-~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---------~l~~l~~----~l~~l~~ry~K~V~V 234 (332)
T PF07745_consen 169 NIKVMLHLANG-GDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---------TLEDLKN----NLNDLASRYGKPVMV 234 (332)
T ss_dssp TSEEEEEES-T-TSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------HHHHHH----HHHHHHHHHT-EEEE
T ss_pred CCcEEEEECCC-CchHHHHHHHHHHHhcCCCcceEEEecCCCCcc---------hHHHHHH----HHHHHHHHhCCeeEE
Confidence 99999982211 121 2232211 356778999999976542 2233322 233343334667999
Q ss_pred ecccccCCC------------------CCcCHHHHHHHHHHHHHHHcc----CCCcEEEE
Q 013777 376 GEWTCEWNV------------------KDASKQDYQRFANAQLDVYGR----ATFGWAYW 413 (436)
Q Consensus 376 GEwg~~~~~------------------~~~~~~~~~~~~~~q~~~~~~----~~~Gw~~W 413 (436)
-|.+..+.. -..+.+..++|+++.+++-.+ .+.|-+||
T Consensus 235 ~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYW 294 (332)
T PF07745_consen 235 VETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYW 294 (332)
T ss_dssp EEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE
T ss_pred EeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEee
Confidence 999865541 113567788888888776544 78999999
No 5
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.57 E-value=2e-14 Score=120.44 Aligned_cols=100 Identities=33% Similarity=0.464 Sum_probs=88.5
Q ss_pred ccEEEEecCCCceEEEcCCCCCCcceEEEEEecC-CeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEEcCCC
Q 013777 6 QKYIAAESGGGTIVVANRTSASGWETFRLWRVNE-TFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGD 84 (436)
Q Consensus 6 ~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~~ 84 (436)
++|+++|..|+. |.|||...+.||+|+|...++ ..+.||+++|+|++++. .+.|+|++++++++++|+|+.+
T Consensus 2 ~~~~~~~k~~~~-l~an~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~---~G~v~~~~~~~~~~~~F~i~~~--- 74 (111)
T PF06268_consen 2 NGYLVSEKFGAH-LNANRASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDS---DGSVVADSETPGPDEFFEIEWH--- 74 (111)
T ss_dssp TEEEEETTCTCB-EEEEESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEET---TSEEEEEESSSSGGGCBEEEEE---
T ss_pred CcEEEEEEcCCE-EECChhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcC---CCeEEecCCCCCCCcEEEEEEC---
Confidence 689999998655 899999999999999997775 44689999999999987 4569999999999999999999
Q ss_pred CcceEEeccCCceEEEeeCeEEEcCCCC
Q 013777 85 SSRVRLSASNGMFIQAISETRLTADYGS 112 (436)
Q Consensus 85 ~~~v~i~~~nG~~lq~~~~~~v~a~~~~ 112 (436)
+..+.++++||+||++.....+.|+...
T Consensus 75 ~~~~~~~~~nGkYl~~~~~g~l~a~~~~ 102 (111)
T PF06268_consen 75 GGKVALRASNGKYLSAGPNGQLKANATS 102 (111)
T ss_dssp TTEEEEECTTSCEEEEETTTEEEEEESS
T ss_pred CCEEEEECCCCCEEeeCCCCeEEEcCCC
Confidence 3578899999999999988888887764
No 6
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.49 E-value=8.9e-13 Score=133.78 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=131.3
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc--CCCCCC---CCC
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL--HAAPGS---QNG 227 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl--H~~pg~---qng 227 (436)
||+.-..++|++.|+++|+|+|||....|...+|.+ +.| .+..||++|+.|+++||+|||.+ +..|.. ..+
T Consensus 6 ~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~P 81 (374)
T PF02449_consen 6 QWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQY---DFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYP 81 (374)
T ss_dssp GS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSG
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Cee---ecHHHHHHHHHHHhccCeEEEEecccccccchhhhcc
Confidence 455545599999999999999999655555667755 355 57889999999999999999977 333321 000
Q ss_pred ----CCCCCC------CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-C------------------
Q 013777 228 ----NEHSAT------RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-G------------------ 278 (436)
Q Consensus 228 ----~~~sg~------~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-~------------------ 278 (436)
.+..|. +.......+..++...++++.|++||+++|+|++|+|-|||... .
T Consensus 82 e~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 82 EILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp CCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHS
T ss_pred cccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhC
Confidence 011111 11111112677888999999999999999999999999998641 0
Q ss_pred -----------------------C----------C-----------hhHHHHHHHHHHHHHHhhCCCeEEEEe--CC-CC
Q 013777 279 -----------------------V----------A-----------LDTLKSYYKAGYDAVRKYTSTAYVIMS--NR-LG 311 (436)
Q Consensus 279 -----------------------~----------~-----------~~~~~~~~~~~~~aIR~~~p~~~Viv~--~~-~~ 311 (436)
+ . .+.+..+++...++||+++|+++|... +. ..
T Consensus 162 ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~ 241 (374)
T PF02449_consen 162 TIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFN 241 (374)
T ss_dssp SHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---
T ss_pred CHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccC
Confidence 0 0 123557888999999999999988754 11 11
Q ss_pred CCChhhhhccCCCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeeccccc---CCCCC--
Q 013777 312 PADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCE---WNVKD-- 386 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~---~~~~~-- 386 (436)
..+...+.. .-.+++.+.|........ ......+....+ . ...+ ..+.|.+|.|.... |...+
T Consensus 242 ~~d~~~~a~-----~~D~~~~d~Y~~~~~~~~-~~~~~~~a~~~d-l---~R~~--~~~kpf~v~E~~~g~~~~~~~~~~ 309 (374)
T PF02449_consen 242 GIDYFKWAK-----YLDVVSWDSYPDGSFDFY-DDDPYSLAFNHD-L---MRSL--AKGKPFWVMEQQPGPVNWRPYNRP 309 (374)
T ss_dssp SS-HHHHGG-----GSSSEEEEE-HHHHHTTT-T--TTHHHHHHH-H---HHHH--TTT--EEEEEE--S--SSSSS---
T ss_pred cCCHHHHHh-----hCCcceeccccCcccCCC-CCCHHHHHHHHH-H---HHhh--cCCCceEeecCCCCCCCCccCCCC
Confidence 122222222 224677888865100000 111111222111 1 1111 24556999999543 21111
Q ss_pred cCHHHHHHHHHHHHHHHccCCCcEEEEceecC
Q 013777 387 ASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 418 (436)
Q Consensus 387 ~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~ 418 (436)
.....++.+.- ..+....-|-.||.|+..
T Consensus 310 ~~pg~~~~~~~---~~~A~Ga~~i~~~~wr~~ 338 (374)
T PF02449_consen 310 PRPGELRLWSW---QAIAHGADGILFWQWRQS 338 (374)
T ss_dssp --TTHHHHHHH---HHHHTT-S-EEEC-SB--
T ss_pred CCCCHHHHHHH---HHHHHhCCeeEeeeccCC
Confidence 11223333322 223335558889999874
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.5e-11 Score=114.31 Aligned_cols=230 Identities=20% Similarity=0.302 Sum_probs=143.5
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCC--CCCCCccc--hHHHHHHHHHHHHHcCCEEEEEcCC-----CCCCCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPT--PPKPFVGG--SSKVLDNAFDWAEKYGVKVIVDLHA-----APGSQNGNE 229 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~--~~~~~~~~--~l~~ld~~v~~a~~~Gi~VilDlH~-----~pg~qng~~ 229 (436)
.++-|+.|++.|+|.|||.+ +.+|. ++.+|..+ .++..-.+-+.|++.||+|++|+|- .|+.|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv----wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~--- 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV----WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK--- 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE----ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC---
Confidence 35678999999999999976 34553 23345443 4666666778899999999999993 444442
Q ss_pred CCCCCCCCCCCC----hhHHHHHHHHHHHHHHHhCCCCc-eeEEEeecCCCC-------CCCChhHHHHHHHHHHHHHHh
Q 013777 230 HSATRDGFQEWG----DSNVADTVAVIDFLAARYANRPS-LAAIELINEPLA-------PGVALDTLKSYYKAGYDAVRK 297 (436)
Q Consensus 230 ~sg~~~~~~~w~----~~~~~~~~~~~~~lA~ry~~~~~-v~g~eL~NEP~~-------~~~~~~~~~~~~~~~~~aIR~ 297 (436)
.+..|. +.......++-+...+++++.-. +-..++-||-.. .+.+.+.+..+..+++.+||+
T Consensus 138 ------kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avre 211 (403)
T COG3867 138 ------KPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVRE 211 (403)
T ss_pred ------CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhh
Confidence 334565 23333444566666667776543 234788999653 233678899999999999999
Q ss_pred hCCCeEEEEeCCCCC--CChhhhhcc--CCCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeE
Q 013777 298 YTSTAYVIMSNRLGP--ADHKELLSF--ASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLT 373 (436)
Q Consensus 298 ~~p~~~Viv~~~~~~--~~~~~~~~~--~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v 373 (436)
++|+.+|+++-.-+. .-+..+++- ...-+-.|+...+|+.|+.. +..+.. .+.+++....+.|
T Consensus 212 v~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgt---------l~nL~~----nl~dia~rY~K~V 278 (403)
T COG3867 212 VSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGT---------LNNLTT----NLNDIASRYHKDV 278 (403)
T ss_pred cCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCc---------HHHHHh----HHHHHHHHhcCeE
Confidence 999999999822111 112222221 13456788999988766531 222222 2333444456679
Q ss_pred EeecccccCCC---------------C-------CcCHHHHHHHHHHHHHHHccCCCcEEEEc
Q 013777 374 FVGEWTCEWNV---------------K-------DASKQDYQRFANAQLDVYGRATFGWAYWA 414 (436)
Q Consensus 374 ~vGEwg~~~~~---------------~-------~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~ 414 (436)
||-|-+-.+.. . +......++.++++..+=..++.|-+||.
T Consensus 279 mV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWE 341 (403)
T COG3867 279 MVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWE 341 (403)
T ss_pred EEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEec
Confidence 99998753310 0 01122344455555555555799999994
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.38 E-value=7.2e-11 Score=127.08 Aligned_cols=225 Identities=19% Similarity=0.164 Sum_probs=137.2
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC--CCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA--APGSQNGNEHSATRDGF 237 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~--~pg~qng~~~sg~~~~~ 237 (436)
+.||+.||++|+|+||+. .. |. . .++++.|.++||.|+-++-. ...... ..........
T Consensus 316 ~~d~~l~K~~G~N~vR~s-----h~-p~--~----------~~~~~~cD~~GllV~~E~p~~~~~~~~~-~~~~~~~~~~ 376 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTS-----HY-PY--S----------EEMLDLADRHGIVVIDETPAVGLNLSFG-AGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHCCCCEEEec-----cC-CC--C----------HHHHHHHHhcCcEEEEeccccccccccc-cccccccccc
Confidence 578999999999999982 11 11 1 25678999999999987632 110000 0000000011
Q ss_pred CCCC-----hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCC-
Q 013777 238 QEWG-----DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG- 311 (436)
Q Consensus 238 ~~w~-----~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~- 311 (436)
..|. +...+...+.++.+.+|++++|+|++|.+.|||.. ..+....+++++++.+|+.||+++|.......
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~ 453 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMFA 453 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEecccC
Confidence 1222 34566778889999999999999999999999863 23566789999999999999999998864211
Q ss_pred CCChhhhhccCCCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccCC-------C
Q 013777 312 PADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-------V 384 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~~-------~ 384 (436)
...... ....-.|+++|.|..|.... ......... ....+..+.+...+|+++.|+|+... .
T Consensus 454 ~~~~~~-----~~~~~Dv~~~N~Y~~wy~~~--~~~~~~~~~----~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~ 522 (604)
T PRK10150 454 TPDTDT-----VSDLVDVLCLNRYYGWYVDS--GDLETAEKV----LEKELLAWQEKLHKPIIITEYGADTLAGLHSMYD 522 (604)
T ss_pred Cccccc-----ccCcccEEEEcccceecCCC--CCHHHHHHH----HHHHHHHHHHhcCCCEEEEccCCccccccccCCC
Confidence 000011 12235788998886543111 111111111 11122222222256699999995321 1
Q ss_pred CCcCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 385 KDASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 385 ~~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
...+.+....+++...+++++ .-+|-+.|++..
T Consensus 523 ~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D 557 (604)
T PRK10150 523 DMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFAD 557 (604)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEEeeec
Confidence 223455556677777777764 567888898775
No 9
>TIGR03356 BGL beta-galactosidase.
Probab=99.33 E-value=1.9e-11 Score=125.77 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=102.9
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||..| ++|++.|+++|+|++|++|.|-.+ .|...+.+++..++.++++|+.|.++||.+||+||+..-.+.
T Consensus 51 d~y~~y--~eDi~l~~~~G~~~~R~si~Wsri-~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~----- 122 (427)
T TIGR03356 51 DHYHRY--EEDVALMKELGVDAYRFSIAWPRI-FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQA----- 122 (427)
T ss_pred cHHHhH--HHHHHHHHHcCCCeEEcccchhhc-ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHH-----
Confidence 566666 899999999999999999998755 444224677789999999999999999999999997532110
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-------CC-C-----hh-------HHHHHHHH
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GV-A-----LD-------TLKSYYKA 290 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-------~~-~-----~~-------~~~~~~~~ 290 (436)
......|. +..++.++++++.+++||++.... |.++|||... +. + .. .+.....+
T Consensus 123 --l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~--w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~ 198 (427)
T TIGR03356 123 --LEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKH--WITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGL 198 (427)
T ss_pred --HHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCE--EEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 00112455 688899999999999999995433 6899999841 00 1 01 12234557
Q ss_pred HHHHHHhhCCCeEE
Q 013777 291 GYDAVRKYTSTAYV 304 (436)
Q Consensus 291 ~~~aIR~~~p~~~V 304 (436)
+++++|+..|+..|
T Consensus 199 A~~~~~~~~~~~~I 212 (427)
T TIGR03356 199 AVQALRANGPGAQV 212 (427)
T ss_pred HHHHHHHhCCCCeE
Confidence 77888888876444
No 10
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.7e-10 Score=115.08 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=152.5
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCC-----CCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCC
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNG 227 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~-----~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng 227 (436)
||..---.+|++-++.+|++.+|+- + .|..+ +....+....+++..++.|..++|+|+|.+-.-
T Consensus 22 ~~~~~ei~~dle~a~~vg~k~lR~f----i-LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg------ 90 (587)
T COG3934 22 AIGNREIKADLEPAGFVGVKDLRLF----I-LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVG------ 90 (587)
T ss_pred HhhhhhhhcccccccCccceeEEEE----E-ecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeec------
Confidence 4433333678888999999999993 2 23211 111223349999999999999999999987532
Q ss_pred CCCCCCCCCCCCCC-----------hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC-CCCChhHHHHHHHHHHHHH
Q 013777 228 NEHSATRDGFQEWG-----------DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA-PGVALDTLKSYYKAGYDAV 295 (436)
Q Consensus 228 ~~~sg~~~~~~~w~-----------~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~-~~~~~~~~~~~~~~~~~aI 295 (436)
+.|-|.+.-...|. +..+....++.+.|.+.||.+|+|+||.+-|||.. ...+...+..|...++..|
T Consensus 91 ~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yi 170 (587)
T COG3934 91 LKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYI 170 (587)
T ss_pred ccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHh
Confidence 22222111112221 34556678999999999999999999999999986 3456788999999999999
Q ss_pred HhhCCCeEEEEeCCCCCCChhhhhccCCCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCC-CeEE
Q 013777 296 RKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNG-PLTF 374 (436)
Q Consensus 296 R~~~p~~~Viv~~~~~~~~~~~~~~~~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~-p~v~ 374 (436)
+.+||+|+|-+++...+ +..+.++-....-..-+.|.|.-|+.+. -.++.+.+. ..+....+.-+ .||+
T Consensus 171 K~ldd~hlvsvGD~~sp--~~~~~pyN~r~~vDya~~hLY~hyd~sl---~~r~s~~yg-----~~~l~i~~~~g~~pV~ 240 (587)
T COG3934 171 KWLDDGHLVSVGDPASP--WPQYAPYNARFYVDYAANHLYRHYDTSL---VSRVSTVYG-----KPYLDIPTIMGWQPVN 240 (587)
T ss_pred hccCCCCeeecCCcCCc--ccccCCcccceeeccccchhhhhccCCh---hheeeeeec-----chhhccchhcccceee
Confidence 99999999988864321 1222221111111234778886443211 011111111 11111122234 5799
Q ss_pred eecccccCCCCCcCHHHHHHHHHHHHHHHccCCCcEEEEceecC
Q 013777 375 VGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 418 (436)
Q Consensus 375 vGEwg~~~~~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~ 418 (436)
+-|||............++.|... ++.-.+.|-.+||+..-
T Consensus 241 leefGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwclsdf 281 (587)
T COG3934 241 LEEFGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWCLSDF 281 (587)
T ss_pred ccccCCcccccccccchhhhhhhh---HHhhcCCceEEEEecCC
Confidence 999998765444444556666554 45556789999999763
No 11
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.09 E-value=1.3e-08 Score=100.22 Aligned_cols=120 Identities=20% Similarity=0.294 Sum_probs=82.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
+.|+..||++|+|+||+.- .| + =.++++.|.++||.|+.++-..... .+...+.. ....
T Consensus 39 ~~d~~l~k~~G~N~iR~~h------~p--~----------~~~~~~~cD~~GilV~~e~~~~~~~--~~~~~~~~-~~~~ 97 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHH------YP--P----------SPRFYDLCDELGILVWQEIPLEGHG--SWQDFGNC-NYDA 97 (298)
T ss_dssp HHHHHHHHHTT-SEEEETT------S--------------SHHHHHHHHHHT-EEEEE-S-BSCT--SSSSTSCT-SCTT
T ss_pred HHHHHHHHhcCcceEEccc------cc--C----------cHHHHHHHhhcCCEEEEeccccccC--ccccCCcc-ccCC
Confidence 6899999999999999821 11 1 1356789999999999988542110 00101100 0000
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
-.+...+...+-++.+.+|++++|+|+.|.+.||+ ....+++++++.+|+.||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeecc
Confidence 01456777888999999999999999999999999 46778899999999999999998764
No 12
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.09 E-value=3e-10 Score=96.20 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=62.6
Q ss_pred ccccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEE
Q 013777 4 KFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQI 78 (436)
Q Consensus 4 ~~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~ 78 (436)
.+||||+++..| .|.|+++ ++.||+|++-..+++.++||+.||+||+++. ++.|.|++++|+++|.|.+
T Consensus 51 ~~G~yls~~~~g--~l~~~~~-~~~~e~F~~e~~~~g~~al~~~~G~yl~~~~---~g~l~~~~~~~~~~e~f~~ 119 (119)
T cd00257 51 HDGKYLSADSDG--GVQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGDG---SGTLKASSETVGPDELFEL 119 (119)
T ss_pred CCCcEEEEECCC--CEEecCC-CCCCcEEEEEECCCCeEEEEcCCCCEEeecC---CCeEEEecCCCCccceecC
Confidence 599999998766 5899999 9999999999998899999999999999986 3479999999999999974
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.98 E-value=8.8e-08 Score=92.09 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC-----hhHHHHHHHHHHHHHHHhCCCCceeEEEe
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSLAAIEL 270 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~-----~~~~~~~~~~~~~lA~ry~~~~~v~g~eL 270 (436)
.++.+|+++++|+++||+| .-|..- +++ ..+.|. +...+.+.++++.+++||++. |..||+
T Consensus 14 n~~~~D~~~~~a~~~gi~v--~gH~l~------W~~----~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~--i~~wdV 79 (254)
T smart00633 14 NFSGADAIVNFAKENGIKV--RGHTLV------WHS----QTPDWVFNLSKETLLARLENHIKTVVGRYKGK--IYAWDV 79 (254)
T ss_pred ChHHHHHHHHHHHHCCCEE--EEEEEe------ecc----cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCc--ceEEEE
Confidence 5899999999999999998 344320 111 112232 345677889999999999875 677999
Q ss_pred ecCCCCCCCC---hhHH-----HHHHHHHHHHHHhhCCCeEEEEeCCC-CCC--Ch---hhh----hccCCCCCcEEEEE
Q 013777 271 INEPLAPGVA---LDTL-----KSYYKAGYDAVRKYTSTAYVIMSNRL-GPA--DH---KEL----LSFASGLSRVVIDV 332 (436)
Q Consensus 271 ~NEP~~~~~~---~~~~-----~~~~~~~~~aIR~~~p~~~Viv~~~~-~~~--~~---~~~----~~~~~~~~nvv~~~ 332 (436)
+|||...... ...| ..|+..+++++|+++|+..+++.+-. ... .. ..+ .....+.+.+-+..
T Consensus 80 ~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~ 159 (254)
T smart00633 80 VNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQS 159 (254)
T ss_pred eeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeee
Confidence 9999863211 0122 26899999999999999999987411 111 01 111 11123456677788
Q ss_pred eecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccCCCCCcCHHHHHHHHHHHHHHHcc--CCCcE
Q 013777 333 HYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGR--ATFGW 410 (436)
Q Consensus 333 H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~~~~~~~~~~~~~~~~~q~~~~~~--~~~Gw 410 (436)
|.+... .+. +.+. +.+..+.+. +.||+|+|+...... +.+...++++..++++-+ ...|.
T Consensus 160 H~~~~~------~~~----~~~~----~~l~~~~~~-g~pi~iTE~dv~~~~---~~~~qA~~~~~~l~~~~~~p~v~gi 221 (254)
T smart00633 160 HLSLGS------PNI----AEIR----AALDRFASL-GLEIQITELDISGYP---NPQAQAADYEEVFKACLAHPAVTGV 221 (254)
T ss_pred eecCCC------CCH----HHHH----HHHHHHHHc-CCceEEEEeecCCCC---cHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 876321 122 2222 223334444 556999999876532 224556667777666654 45799
Q ss_pred EEEceecCCCCCC
Q 013777 411 AYWAHKCEANHWS 423 (436)
Q Consensus 411 ~~W~~k~~~~~Ws 423 (436)
++|.+... .+|.
T Consensus 222 ~~Wg~~d~-~~W~ 233 (254)
T smart00633 222 TVWGVTDK-YSWL 233 (254)
T ss_pred EEeCCccC-Cccc
Confidence 99998763 4553
No 14
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=98.97 E-value=2.1e-09 Score=111.64 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=89.1
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||+.| ++|++.|+++|+|+.|+++.|..+.+...++...+..++..+++|+.|.++||.+||+||+..--+.-
T Consensus 68 D~Yhry--~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l---- 141 (474)
T PRK09852 68 DFYHRY--KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHL---- 141 (474)
T ss_pred chhhhh--HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHH----
Confidence 577777 89999999999999999999986654322223467799999999999999999999999986432110
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
.+....|. +..++.+.++++.++++|++.-.. |=.+|||.
T Consensus 142 --~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~--WiTfNEPn 182 (474)
T PRK09852 142 --VTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKY--WLTFNEIN 182 (474)
T ss_pred --HHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCe--EEeecchh
Confidence 01123466 688999999999999999986544 55889997
No 15
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1e-08 Score=104.04 Aligned_cols=145 Identities=18% Similarity=0.217 Sum_probs=104.9
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||..| ++|++.+|++|+|+.|+.|.|-...+....+...+..|+..+++++.|.++||..+|.||+..--+.=.
T Consensus 56 d~YhrY--keDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~--- 130 (460)
T COG2723 56 DFYHRY--KEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQ--- 130 (460)
T ss_pred chhhhh--HHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHh---
Confidence 567777 899999999999999999999765542222245677999999999999999999999999975432111
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC--------CC--hhHHHHHH----------HH
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG--------VA--LDTLKSYY----------KA 290 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~--------~~--~~~~~~~~----------~~ 290 (436)
+....|. ...++.++++.+.+++||++.-.. |=.+|||.... .+ ....+..+ ..
T Consensus 131 ---~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~--W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~ 205 (460)
T COG2723 131 ---KPYGGWENRETVDAFARYAATVFERFGDKVKY--WFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHAL 205 (460)
T ss_pred ---hccCCccCHHHHHHHHHHHHHHHHHhcCcceE--EEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 1123576 789999999999999999975433 56899998521 11 11133332 35
Q ss_pred HHHHHHhhCCC-eEEEE
Q 013777 291 GYDAVRKYTST-AYVIM 306 (436)
Q Consensus 291 ~~~aIR~~~p~-~~Viv 306 (436)
+++++|+..|+ .+=++
T Consensus 206 avk~~~~~~~~~kIG~~ 222 (460)
T COG2723 206 AVKAIKKINPKGKVGII 222 (460)
T ss_pred HHHHHHhhCCcCceEEE
Confidence 66788888887 44333
No 16
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.94 E-value=4.1e-09 Score=88.25 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=62.7
Q ss_pred ccccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEE
Q 013777 4 KFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQI 78 (436)
Q Consensus 4 ~~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~ 78 (436)
.+||||+++.-| .|+|++..++.|++|+|..- ++.+.||..||+||++.. ++.|.|++++|+.+|.|++
T Consensus 43 ~~GkYls~~~~G--~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~---~g~l~a~~~~~~~~elf~~ 111 (111)
T PF06268_consen 43 HNGKYLSVDSDG--SVVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGP---NGQLKANATSPGKDELFEY 111 (111)
T ss_dssp TTSEEEEEETTS--EEEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEET---TTEEEEEESSSSGGGEEEE
T ss_pred CCCCEEEEcCCC--eEEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCC---CCeEEEcCCCCCcceEEeC
Confidence 589999998877 79999999999999999998 788899999999999875 4569999999999999985
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.92 E-value=5.1e-09 Score=108.96 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=89.1
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||+.| ++|++.|+++|+|+.|++|.|-.+++....+...+..++..+++|+.|.++||.+||+||+..--|.=
T Consensus 66 D~Yhry--~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L---- 139 (477)
T PRK15014 66 DFYGHY--KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHL---- 139 (477)
T ss_pred Cccccc--HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHH----
Confidence 678777 99999999999999999999976643222233567799999999999999999999999876432110
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
.+....|. +..++.+.++.+.++++|++.-.. |-.+|||.
T Consensus 140 --~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~--WiT~NEp~ 180 (477)
T PRK15014 140 --VQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKY--WMTFNEIN 180 (477)
T ss_pred --HHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE--EEEecCcc
Confidence 01123465 788999999999999999987543 55899996
No 18
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=98.87 E-value=2.6e-08 Score=103.54 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=89.8
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||+.| ++|++.|+++|+|+.|+.+.|-.+. |...+++++..++..+++|+.|.++||..||.||+..--|.=
T Consensus 50 d~yhry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L---- 122 (467)
T TIGR01233 50 DFYHKY--PVDLELAEEYGVNGIRISIAWSRIF-PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEAL---- 122 (467)
T ss_pred chhhhH--HHHHHHHHHcCCCEEEEecchhhcc-CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHH----
Confidence 577777 8999999999999999999987554 433346778899999999999999999999999986432210
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
.....|. +..++.+.++.+.++++|++ |--|-.+|||..
T Consensus 123 ---~~~GGW~n~~~v~~F~~YA~~~f~~fgd---Vk~WiT~NEP~~ 162 (467)
T TIGR01233 123 ---HSNGDFLNRENIEHFIDYAAFCFEEFPE---VNYWTTFNEIGP 162 (467)
T ss_pred ---HHcCCCCCHHHHHHHHHHHHHHHHHhCC---CCEEEEecchhh
Confidence 1123566 78999999999999999984 434778999984
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.85 E-value=2.1e-08 Score=105.25 Aligned_cols=267 Identities=17% Similarity=0.208 Sum_probs=132.7
Q ss_pred chhhhhccCcChhhHHHHHhhhhcCCHHHHHHHH-hCCCCEEEecCccccccCCCCCCCCc----cc----hHHHHHHHH
Q 013777 134 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLS-SNGINAVRIPVGWWIANDPTPPKPFV----GG----SSKVLDNAF 204 (436)
Q Consensus 134 e~~~~~~~G~~~a~~~~~~h~~~~ite~d~~~ia-~~G~N~VRipv~~~~~~~~~~~~~~~----~~----~l~~ld~~v 204 (436)
-|..|-+. ..+...++..| ...++.++ +.||..||+ ++++.+.- ..+. ++ .+..||+++
T Consensus 23 ~W~~~~~~--g~a~~~l~~~~-----q~~l~~~~~~~gf~yvR~---h~l~~ddm--~~~~~~~~~~~~~Ynf~~lD~i~ 90 (486)
T PF01229_consen 23 FWRFCVGS--GRANLLLRADW-----QEQLRELQEELGFRYVRF---HGLFSDDM--MVYSESDEDGIPPYNFTYLDQIL 90 (486)
T ss_dssp GGGSEEEE--S-GGGGGBHHH-----HHHHHHHHCCS--SEEEE---S-TTSTTT--T-EEEEETTEEEEE--HHHHHHH
T ss_pred hhhhhcCC--CchHHHhhHHH-----HHHHHHHHhccCceEEEE---EeeccCch--hhccccccCCCCcCChHHHHHHH
Confidence 34444333 34666676677 46677775 789999999 34442221 0110 11 589999999
Q ss_pred HHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC-----hhHHHHHHHHHHHHHHHhCCC----C-ceeEEEeecCC
Q 013777 205 DWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANR----P-SLAAIELINEP 274 (436)
Q Consensus 205 ~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~-----~~~~~~~~~~~~~lA~ry~~~----~-~v~g~eL~NEP 274 (436)
+...++||+..|.|--.|..- .++.. ..-.|. +...+.+.++++.+++||.+. . .-+-||+.|||
T Consensus 91 D~l~~~g~~P~vel~f~p~~~----~~~~~-~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEP 165 (486)
T PF01229_consen 91 DFLLENGLKPFVELGFMPMAL----ASGYQ-TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEP 165 (486)
T ss_dssp HHHHHCT-EEEEEE-SB-GGG----BSS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-T
T ss_pred HHHHHcCCEEEEEEEechhhh----cCCCC-ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCC
Confidence 999999999999997655321 01100 011111 466778888877777766432 1 22459999999
Q ss_pred CCCC----CChhHHHHHHHHHHHHHHhhCCCeEEEEeC-CCCCCC-hhhhhccC--CCCCcEEEEEeecCcCCCCCCCCC
Q 013777 275 LAPG----VALDTLKSYYKAGYDAVRKYTSTAYVIMSN-RLGPAD-HKELLSFA--SGLSRVVIDVHYYNLFSNNFNGLN 346 (436)
Q Consensus 275 ~~~~----~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~-~~~~~~-~~~~~~~~--~~~~nvv~~~H~Y~~~~~~~~~~~ 346 (436)
.... .+.+.+.++|+.++++||+++|...|--.. .++... ...++.+. ...+-..+++|.|..-........
T Consensus 166 d~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~ 245 (486)
T PF01229_consen 166 DLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINEN 245 (486)
T ss_dssp TSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchh
Confidence 8642 234568899999999999999998753221 122111 13333321 234557899999974111101111
Q ss_pred hhh---hHHHHHHhhhhhHHHhhhcCC--CeEEeecccccCCCCCcCH--HHHHHHH-HHHHHHHccCCCcEEEEceec
Q 013777 347 VQQ---NIDYVNNQRASDLGAVTTSNG--PLTFVGEWTCEWNVKDASK--QDYQRFA-NAQLDVYGRATFGWAYWAHKC 417 (436)
Q Consensus 347 ~~~---~i~~i~~~~~~~~~~~~~~~~--p~v~vGEwg~~~~~~~~~~--~~~~~~~-~~q~~~~~~~~~Gw~~W~~k~ 417 (436)
... ..+.+..........+..... .++.+.||+.......... .....|+ +..++.++..--+..||++-.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD 324 (486)
T PF01229_consen 246 MYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSD 324 (486)
T ss_dssp EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhh
Confidence 111 112222222111122222322 3599999987543211111 1223443 335666654344688999965
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=98.79 E-value=2.2e-08 Score=104.33 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=89.5
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||+.| ++|++.|+++|+|+.|+.|.|-.+. |...+..++..++..+++|+.|.++||..||+||+..--+.=
T Consensus 51 d~Y~ry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L---- 123 (469)
T PRK13511 51 DFYHRY--PEDLKLAEEFGVNGIRISIAWSRIF-PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEAL---- 123 (469)
T ss_pred chhhhh--HHHHHHHHHhCCCEEEeeccHhhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHH----
Confidence 577777 9999999999999999999987554 433345678899999999999999999999999986432210
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
.....|. +...+.+.++.+.++++|++ |--|-.+|||..
T Consensus 124 ---~~~GGW~n~~~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~~ 163 (469)
T PRK13511 124 ---HSNGDWLNRENIDHFVRYAEFCFEEFPE---VKYWTTFNEIGP 163 (469)
T ss_pred ---HHcCCCCCHHHHHHHHHHHHHHHHHhCC---CCEEEEccchhh
Confidence 0123466 78899999999999999998 333668999974
No 21
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=98.77 E-value=2e-08 Score=104.54 Aligned_cols=141 Identities=20% Similarity=0.267 Sum_probs=99.5
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 230 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~-~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~ 230 (436)
+||..| ++|++.|+++|+|+.|+.|.|-.+ .|.+ .+.+++..++..+++|+.++++||.+||+||+..--+.
T Consensus 55 d~y~~y--~eDi~l~~~lg~~~yRfsi~W~Ri-~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~---- 127 (455)
T PF00232_consen 55 DHYHRY--KEDIALMKELGVNAYRFSISWSRI-FPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLW---- 127 (455)
T ss_dssp GHHHHH--HHHHHHHHHHT-SEEEEE--HHHH-STTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHH----
T ss_pred cchhhh--hHHHHHHHhhccceeeeecchhhe-eecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccc----
Confidence 577666 899999999999999999998655 4543 45677889999999999999999999999997521100
Q ss_pred CCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------------CC-Ch-------hHHHHHHH
Q 013777 231 SATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------GV-AL-------DTLKSYYK 289 (436)
Q Consensus 231 sg~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~------------~~-~~-------~~~~~~~~ 289 (436)
......|. +...+.+.++.+.++++|++.-.. |-.+|||... +. +. ..+.....
T Consensus 128 ---l~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~--w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa 202 (455)
T PF00232_consen 128 ---LEDYGGWLNRETVDWFARYAEFVFERFGDRVKY--WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHA 202 (455)
T ss_dssp ---HHHHTGGGSTHHHHHHHHHHHHHHHHHTTTBSE--EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHH
T ss_pred ---eeecccccCHHHHHHHHHHHHHHHHHhCCCcce--EEeccccceeeccccccccccccccccchhhHHHhhHHHHHH
Confidence 00012354 688999999999999999986443 5689999841 10 11 11334456
Q ss_pred HHHHHHHhhCCCeEE
Q 013777 290 AGYDAVRKYTSTAYV 304 (436)
Q Consensus 290 ~~~~aIR~~~p~~~V 304 (436)
++++++|+..++..|
T Consensus 203 ~A~~~~~~~~~~~~I 217 (455)
T PF00232_consen 203 KAVKAIKEKYPDGKI 217 (455)
T ss_dssp HHHHHHHHHTCTSEE
T ss_pred HHHHHHhhcccceEE
Confidence 788899998887655
No 22
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.76 E-value=3.9e-08 Score=102.49 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=89.2
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||..| ++|++.|+++|+|+.|+.|.|-.+++...++...+..++..+++|+.|.++||.+||.||+..--|.=.
T Consensus 70 d~Yhry--~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~--- 144 (478)
T PRK09593 70 DMYHHY--KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI--- 144 (478)
T ss_pred chHHhh--HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH---
Confidence 577777 999999999999999999999755432112335778999999999999999999999999864322100
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
+....|. +...+.+.++.+.++++|++.-.. |=.+|||..
T Consensus 145 ---~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~~ 185 (478)
T PRK09593 145 ---EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKY--WLTFNEINM 185 (478)
T ss_pred ---hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE--EEeecchhh
Confidence 1123566 678899999999999999986544 558999973
No 23
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.75 E-value=4e-08 Score=102.39 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=88.4
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||+.| ++|++.|+++|+|+.|+.|.|-.+.+....+...+..++..+++|+.|.++||..||.||+..--+.=
T Consensus 64 D~Yhry--~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L---- 137 (476)
T PRK09589 64 DFYHRY--KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHL---- 137 (476)
T ss_pred cHHHhh--HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHH----
Confidence 577777 89999999999999999999975543211233567899999999999999999999999986432110
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
.+....|. +..++.+.++.+.++++|++.-.. |=.+|||.
T Consensus 138 --~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~--WiT~NEp~ 178 (476)
T PRK09589 138 --VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKY--WMTFNEIN 178 (476)
T ss_pred --HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCE--EEEecchh
Confidence 01123465 688899999999999999985433 55889997
No 24
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.73 E-value=7.4e-08 Score=87.72 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=56.0
Q ss_pred CcccccEEEEecCCCceEEEcCCCCCCcceEEEEEe-cCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEE
Q 013777 2 STKFQKYIAAESGGGTIVVANRTSASGWETFRLWRV-NETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVR 80 (436)
Q Consensus 2 s~~~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~ 80 (436)
++.+|.|.+||.=.- ....++.|.|.+.++ ++++|+||+.+|+||+|+.. +.|+|+++++|+.|+|++|.
T Consensus 6 a~d~G~~t~~ePhd~------~~~p~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk~---G~v~a~sdAiGp~E~f~~V~ 76 (191)
T PF06229_consen 6 ALDNGLFTTGEPHDV------GEGPDPRQVWVATRVPGDEKIAFKSGHGKYLSCDKD---GIVSARSDAIGPQEQFEPVF 76 (191)
T ss_dssp E-TTS-EEE----SS------S----TTT-EEEEE--SSS-EEEEETTS-BEEE-SS---SBEEE--SS--TTTBEEEE-
T ss_pred eeccCCccccCCCcC------CCCCChhHeEEEEEecCCCceEeeccCccEEEEcCC---CcEEEEeecCCCceEEEEEE
Confidence 355677777765321 335678999999999 89999999999999999974 56999999999999999999
Q ss_pred cCCCCcceEEec-cCCceEEEeeCeEEEcCC
Q 013777 81 KDGDSSRVRLSA-SNGMFIQAISETRLTADY 110 (436)
Q Consensus 81 ~~~~~~~v~i~~-~nG~~lq~~~~~~v~a~~ 110 (436)
.++. ..+.. .|+.||.++...-+.++-
T Consensus 77 ~~~~---~a~~~~~~~~FLs~~~~~~i~a~s 104 (191)
T PF06229_consen 77 QDGK---PALFSSSNNKFLSVDEEGDIRADS 104 (191)
T ss_dssp STT-----EEEE-TTS-BEEE-SSS-EEE--
T ss_pred CCCC---eEEEecCCCeEEEEecccCeeecc
Confidence 7644 44555 999999987533344443
No 25
>PLN02849 beta-glucosidase
Probab=98.72 E-value=4.7e-08 Score=102.30 Aligned_cols=114 Identities=22% Similarity=0.296 Sum_probs=89.9
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||..| ++|++.||++|+|+.|+.|.|-.+. |...+++++..++..+++|+.|.++||..||.||+..--+.=
T Consensus 76 D~YhrY--~eDI~Lm~~lG~~aYRfSIsWsRI~-P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L---- 148 (503)
T PLN02849 76 DGYHKY--KEDVKLMVETGLDAFRFSISWSRLI-PNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYL---- 148 (503)
T ss_pred cHHHhH--HHHHHHHHHcCCCeEEEeccHHhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHH----
Confidence 577777 8999999999999999999986554 443346678899999999999999999999999986422100
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
.+....|. +...+.+.++.+.++++|++.-.. |=.+|||..
T Consensus 149 --~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~--WiT~NEP~~ 190 (503)
T PLN02849 149 --EDDYGGWINRRIIKDFTAYADVCFREFGNHVKF--WTTINEANI 190 (503)
T ss_pred --HHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCE--EEEecchhh
Confidence 00123465 688999999999999999986544 558999984
No 26
>PLN02814 beta-glucosidase
Probab=98.71 E-value=5.1e-08 Score=102.06 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=89.9
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||+.| ++|++.||++|+|+.|+.|.|-.+. |+..+..++..++..+++|+.|.++||.+||.||+..--+.=
T Consensus 74 D~Yhry--~EDI~L~k~lG~~ayRfSIsWsRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L---- 146 (504)
T PLN02814 74 DGYHKY--KEDVKLMAEMGLESFRFSISWSRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSL---- 146 (504)
T ss_pred cHHHhh--HHHHHHHHHcCCCEEEEeccHhhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHH----
Confidence 577777 8999999999999999999987554 433345678899999999999999999999999986322100
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
.+.+..|. ++..+.+.++.+.++++|++.-.. |=.+|||..
T Consensus 147 --~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~--WiT~NEP~~ 188 (504)
T PLN02814 147 --EDEYGGWINRKIIEDFTAFADVCFREFGEDVKL--WTTINEATI 188 (504)
T ss_pred --HHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCE--EEeccccch
Confidence 01123566 788999999999999999986443 557999984
No 27
>PLN02998 beta-glucosidase
Probab=98.71 E-value=4.8e-08 Score=102.10 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=90.1
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+||..| ++|++.|+++|+|+.|+.|.|-.+. |+..+++++..++..+++|+.+.++||.+||.||+..--+.=
T Consensus 79 D~Yhry--~EDi~lmk~lG~~~YRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L---- 151 (497)
T PLN02998 79 DQYHKY--KEDVKLMADMGLEAYRFSISWSRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQAL---- 151 (497)
T ss_pred cHHHhh--HHHHHHHHHcCCCeEEeeccHHhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHH----
Confidence 677777 8999999999999999999987554 433345678899999999999999999999999986432110
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
.+....|. ++.++.+.++.+.++++|++.-.. |=.+|||..
T Consensus 152 --~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~~ 193 (497)
T PLN02998 152 --EDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSH--WTTINEVNV 193 (497)
T ss_pred --HHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCE--EEEccCcch
Confidence 00123465 688999999999999999986443 558999984
No 28
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.61 E-value=5.4e-08 Score=77.94 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=48.8
Q ss_pred HHHHhCCCCceeEEEeecC-CCCC---------CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCCChhhhhccCCC
Q 013777 255 LAARYANRPSLAAIELINE-PLAP---------GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASG 324 (436)
Q Consensus 255 lA~ry~~~~~v~g~eL~NE-P~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~~~~~~~~ 324 (436)
|.++|+++|.|++|||.|| |... ....+.+.+|+++++.+||+++|+++|.++ .++ .....+... ..
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g-~~~-~~~~~~~~~-~~ 77 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG-FWG-GDWEDLEQL-QA 77 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE---B---S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee-ccc-CCHHHHHHh-ch
Confidence 4678999999999999999 7621 123467899999999999999999999775 232 222233333 12
Q ss_pred CCcEEEEEeec
Q 013777 325 LSRVVIDVHYY 335 (436)
Q Consensus 325 ~~nvv~~~H~Y 335 (436)
..-.++++|.|
T Consensus 78 ~~~DvisfH~Y 88 (88)
T PF12876_consen 78 ENLDVISFHPY 88 (88)
T ss_dssp TT-SSEEB-EE
T ss_pred hcCCEEeeecC
Confidence 34578999998
No 29
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.59 E-value=4.3e-06 Score=94.80 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc----CCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 235 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl----H~~pg~qng~~~sg~~~ 235 (436)
++||+.||++|+|+||+. .. | .. .++.++|.++||+|+-+. |+... .+...
T Consensus 374 ~~di~lmK~~g~NaVR~s-----Hy-P--~~----------p~fydlcDe~GilV~dE~~~e~hg~~~-------~~~~~ 428 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCS-----HY-P--NH----------PLWYELCDRYGLYVVDEANIETHGMVP-------MNRLS 428 (1027)
T ss_pred HHHHHHHHHCCCCEEEec-----CC-C--CC----------HHHHHHHHHcCCEEEEecCccccCCcc-------ccCCC
Confidence 689999999999999983 11 1 11 245789999999999885 32110 00000
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.. +...+.+.+-++.+..|.+++|+|+.|.+.||+... ....++++.+|+.||+++|...+
T Consensus 429 ~d----p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g--------~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 429 DD----PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG--------ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CC----HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC--------hhHHHHHHHHHhhCCCCcEEECC
Confidence 01 344566777789999999999999999999998631 12467889999999999998764
No 30
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.56 E-value=1.3e-07 Score=86.16 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=44.6
Q ss_pred ccccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEEcC
Q 013777 4 KFQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKD 82 (436)
Q Consensus 4 ~~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~ 82 (436)
.+|||||++.-| .|+|+++++|++|+|+++..+++.-.|...|++||+++.. +. |+|++.++|..|.+.|--+.
T Consensus 46 ~~GkYLs~Dk~G--~v~a~sdAiGp~E~f~~V~~~~~~a~~~~~~~~FLs~~~~--~~-i~a~s~~a~~~e~~~iR~~~ 119 (191)
T PF06229_consen 46 GHGKYLSCDKDG--IVSARSDAIGPQEQFEPVFQDGKPALFSSSNNKFLSVDEE--GD-IRADSKTAGENEMIKIRSDA 119 (191)
T ss_dssp TTS-BEEE-SSS--BEEE--SS--TTTBEEEE-STT--EEEE-TTS-BEEE-SS--S--EEE--S---TTT--EEEE-S
T ss_pred cCccEEEEcCCC--cEEEEeecCCCceEEEEEECCCCeEEEecCCCeEEEEecc--cC-eeeccccCCCCceEEEEEec
Confidence 489999999987 8999999999999999998765544444489999999984 33 99999999999988876554
No 31
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.53 E-value=4.6e-06 Score=94.64 Aligned_cols=114 Identities=20% Similarity=0.203 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc----CCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 235 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl----H~~pg~qng~~~sg~~~ 235 (436)
+.|++.||++|+|+||+. +. | +. .++.+.|.++||+|+-+. |..+ ..+..
T Consensus 358 ~~dl~lmK~~g~NavR~s-----Hy-P--~~----------~~fydlcDe~GllV~dE~~~e~~g~~-------~~~~~- 411 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTA-----HY-P--ND----------PRFYELCDIYGLFVMAETDVESHGFA-------NVGDI- 411 (1021)
T ss_pred HHHHHHHHHCCCCEEEec-----CC-C--CC----------HHHHHHHHHCCCEEEECCcccccCcc-------ccccc-
Confidence 688999999999999983 11 1 11 245789999999999875 3321 11100
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
....-.+...+.+++-++.+.+|++++|+|+.|.+.||.... ...+++++.+|+.||+++|..+
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g--------~~~~~~~~~~k~~DptR~v~~~ 475 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG--------CNIRAMYHAAKALDDTRLVHYE 475 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc--------HHHHHHHHHHHHhCCCceEEeC
Confidence 000000234456667788899999999999999999998531 1246889999999999998765
No 32
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.52 E-value=5.9e-06 Score=80.06 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
+.|+..|+++|+|+||+ | ..+|.. --|.+++.+.+.||||||||-....+.+.. +....
T Consensus 56 ~rDi~~l~~LgiNtIRV---Y--~vdp~~----------nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~------~P~~s 114 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRV---Y--SVDPSK----------NHDECMSAFADAGIYVILDLNTPNGSINRS------DPAPS 114 (314)
T ss_dssp HHHHHHHHHHT-SEEEE---S-----TTS------------HHHHHHHHHTT-EEEEES-BTTBS--TT------S----
T ss_pred HHhHHHHHHcCCCEEEE---E--EeCCCC----------CHHHHHHHHHhCCCEEEEecCCCCccccCC------CCcCC
Confidence 79999999999999999 2 234422 257788889999999999998875443321 11124
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC---ChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV---ALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~---~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
|.....++. ..+...|+..++++||-.-||-..... ...-++...+++=+.|++.+. +.|-|+
T Consensus 115 w~~~l~~~~----~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG 180 (314)
T PF03198_consen 115 WNTDLLDRY----FAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG 180 (314)
T ss_dssp --HHHHHHH----HHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EE
T ss_pred CCHHHHHHH----HHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCcee
Confidence 543334444 444556788899999999999764321 233455556666666666554 334444
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.46 E-value=7.1e-06 Score=80.33 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCEEEecCccccc-c-CC--CC--------CC-----CCccchHHHHHHHHHHHHHcCCEEEEE-cCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIA-N-DP--TP--------PK-----PFVGGSSKVLDNAFDWAEKYGVKVIVD-LHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~-~-~~--~~--------~~-----~~~~~~l~~ld~~v~~a~~~Gi~VilD-lH~~ 221 (436)
+.-++..++.|||+||+-+--... . .+ .+ +. .+.+.+++.||++|+.|.++||.+-|= +|..
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~ 112 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGC 112 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-HH
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 455888999999999996632111 1 11 00 00 134569999999999999999998554 4522
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCC
Q 013777 222 PGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 301 (436)
Q Consensus 222 pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 301 (436)
+.. .+.+..+. . .-..+...++++.|++||+..|+|+ |-|.||=. ....-.+.++++.+.||+.+|.
T Consensus 113 ~~~-~~~Wg~~~----~---~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~----~~~~~~~~w~~~~~~i~~~dp~ 179 (289)
T PF13204_consen 113 PYV-PGTWGFGP----N---IMPPENAERYGRYVVARYGAYPNVI-WILGGDYF----DTEKTRADWDAMARGIKENDPY 179 (289)
T ss_dssp HHH--------T----T---SS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHHH--S
T ss_pred ccc-cccccccc----c---CCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccC----CCCcCHHHHHHHHHHHHhhCCC
Confidence 210 01111110 0 1356788899999999999999998 88999971 2344566777889999999998
Q ss_pred eEEEEeCC
Q 013777 302 AYVIMSNR 309 (436)
Q Consensus 302 ~~Viv~~~ 309 (436)
.++.+++.
T Consensus 180 ~L~T~H~~ 187 (289)
T PF13204_consen 180 QLITIHPC 187 (289)
T ss_dssp S-EEEEE-
T ss_pred CcEEEeCC
Confidence 88888853
No 34
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.41 E-value=2.8e-06 Score=84.32 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
++.++.||++|+|+|-++|.|-. .+|.+ +.|+=+...-|+++++.|+++||+|||-.=-. .++....| |.+.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~-he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpy---i~aE~~~g---G~P~ 98 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNL-HEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPY---ICAEWDNG---GLPA 98 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHH-HSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES------TTBGGG---G--G
T ss_pred HHHHHHHHhCCcceEEEeccccc-cCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccce---ecccccch---hhhh
Confidence 78899999999999999998754 45544 45664555779999999999999999864211 11111111 2333
Q ss_pred CC------------hhHHHHHHHHHHHHHHHhCC-----CCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 240 WG------------DSNVADTVAVIDFLAARYAN-----RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 240 w~------------~~~~~~~~~~~~~lA~ry~~-----~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
|- +...+...++++.|++..+. --.|+++++=||... ...-+.|++.+.++.|+...+.
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~----~~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS----YGTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC----TSS-HHHHHHHHHHHHHTT-SS
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC----CcccHhHHHHHHHHHHHhhCcc
Confidence 42 34455555566665554332 236888999999762 2345678888888888888774
Q ss_pred EEEEe
Q 013777 303 YVIMS 307 (436)
Q Consensus 303 ~Viv~ 307 (436)
++...
T Consensus 175 ~~~~t 179 (319)
T PF01301_consen 175 VLLYT 179 (319)
T ss_dssp SBEEE
T ss_pred ceeec
Confidence 44444
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.32 E-value=2.7e-05 Score=69.80 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCCEEEecCc-cccc-cCCCC--CCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVG-WWIA-NDPTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~-~~~~-~~~~~--~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
+++|+.|++.|+++|=|-.. +... ..|.. +..+....-+.|+.+++.|.++||+|.|.|.-.+.. +..
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~----w~~---- 94 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDY----WDQ---- 94 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchh----hhc----
Confidence 79999999999999966321 1100 00110 111223456889999999999999999999876432 211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.... ...+....+.+.|.++|+.+|++.||=|-.|+.... ..-...++.+.+.++++.++.+|+|++
T Consensus 95 ~~~~---~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~s~~~Pv~ISp 161 (166)
T PF14488_consen 95 GDLD---WEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQISPGKPVMISP 161 (166)
T ss_pred cCHH---HHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHhCCCCCeEEec
Confidence 1111 234445568899999999999999999999998532 333667788888889998899999885
No 36
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.15 E-value=8.6e-05 Score=73.85 Aligned_cols=233 Identities=17% Similarity=0.226 Sum_probs=131.2
Q ss_pred HHHHHHhCCCCEEEecCc-cccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEE---EEcCCCCCCCCCCCCCCCCCCC
Q 013777 162 DFKFLSSNGINAVRIPVG-WWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI---VDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 162 d~~~ia~~G~N~VRipv~-~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vi---lDlH~~pg~qng~~~sg~~~~~ 237 (436)
..+.+-..-||.|=..-. -|....|.++ .+ .++..|++++||+++||.|- |=-|. |.+.+-...
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g-~~---~~~~~D~~~~~a~~~g~~vrGH~LvW~~----~~P~w~~~~---- 93 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPEPG-RF---NFESADAILDWARENGIKVRGHTLVWHS----QTPDWVFNL---- 93 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESBTT-BE---E-HHHHHHHHHHHHTT-EEEEEEEEESS----SS-HHHHTS----
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCCCC-cc---CccchhHHHHHHHhcCcceeeeeEEEcc----cccceeeec----
Confidence 455555566787775422 1223333322 22 57889999999999999985 33332 222111110
Q ss_pred CCCChh----HHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC-----ChhHHH-----HHHHHHHHHHHhhCCCeE
Q 013777 238 QEWGDS----NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-----ALDTLK-----SYYKAGYDAVRKYTSTAY 303 (436)
Q Consensus 238 ~~w~~~----~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~-----~~~~~~-----~~~~~~~~aIR~~~p~~~ 303 (436)
..+.+. ..++..+.++.+++||++...|..||++|||..... ....|. .|...+++..|+.+|+..
T Consensus 94 ~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~ 173 (320)
T PF00331_consen 94 ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAK 173 (320)
T ss_dssp TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSE
T ss_pred cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcE
Confidence 112212 466677999999999998888999999999986432 011222 588999999999999999
Q ss_pred EEEeCCCCCCCh---------hhhhccCCCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEE
Q 013777 304 VIMSNRLGPADH---------KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTF 374 (436)
Q Consensus 304 Viv~~~~~~~~~---------~~~~~~~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~ 374 (436)
+++.+-.--... ..+..-..+.+.+-+..|.-... . ++.+.+ .+..+... |.+|.
T Consensus 174 L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~-------~----~~~i~~----~l~~~~~~-Gl~i~ 237 (320)
T PF00331_consen 174 LFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGY-------P----PEQIWN----ALDRFASL-GLPIH 237 (320)
T ss_dssp EEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTS-------S----HHHHHH----HHHHHHTT-TSEEE
T ss_pred EEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCC-------C----HHHHHH----HHHHHHHc-CCceE
Confidence 998742111111 11111123467799999976431 1 222222 22333333 56799
Q ss_pred eecccccCCCCC---cCHHHHHHHHHHHHHHHcc----CCCcEEEEceecCCCCCC
Q 013777 375 VGEWTCEWNVKD---ASKQDYQRFANAQLDVYGR----ATFGWAYWAHKCEANHWS 423 (436)
Q Consensus 375 vGEwg~~~~~~~---~~~~~~~~~~~~q~~~~~~----~~~Gw~~W~~k~~~~~Ws 423 (436)
|+|+-..-.... ...+...++++..++++-+ ...|-++|.+-.. ..|-
T Consensus 238 ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~-~sW~ 292 (320)
T PF00331_consen 238 ITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDG-YSWR 292 (320)
T ss_dssp EEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTT-GSTT
T ss_pred EEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCC-Cccc
Confidence 999975433211 1123334455555554432 3568999998773 3443
No 37
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=5.8e-05 Score=80.89 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=89.6
Q ss_pred CHHHHHHHHhCCCCEEEe-cCccccccCCCCCCCCccchHHHHHHH-HHHHHHcCCEEEEEcCCCCCCCCCCCCC-----
Q 013777 159 TDEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPFVGGSSKVLDNA-FDWAEKYGVKVIVDLHAAPGSQNGNEHS----- 231 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRi-pv~~~~~~~~~~~~~~~~~~l~~ld~~-v~~a~~~Gi~VilDlH~~pg~qng~~~s----- 231 (436)
-++|++.|+++|+|+||+ .|.| .+.+|..+ .|+ +..+|.. ++.|.+.||+|||--- |.+.-+.+-+
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW-~~~eP~eG-~fd---f~~~D~~~l~~a~~~Gl~vil~t~--P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAW-NLHEPEEG-KFD---FTWLDEIFLERAYKAGLYVILRTG--PTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEe-eccCcccc-ccC---cccchHHHHHHHHhcCceEEEecC--CCCCCchHHhcCChh
Confidence 389999999999999999 7766 45666543 342 3356666 9999999999999652 2110000100
Q ss_pred -------CCCCCCCCCC------hhHHHHHHHHHHHHHHH-hCCCCceeEEEeecCCCC----CCCChhHHHHHHHHHHH
Q 013777 232 -------ATRDGFQEWG------DSNVADTVAVIDFLAAR-YANRPSLAAIELINEPLA----PGVALDTLKSYYKAGYD 293 (436)
Q Consensus 232 -------g~~~~~~~w~------~~~~~~~~~~~~~lA~r-y~~~~~v~g~eL~NEP~~----~~~~~~~~~~~~~~~~~ 293 (436)
+.......|. +.+.+....+.+.|++| |++.|+|++|.+=||=.. -..+...++.|.++-|.
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg 184 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYG 184 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcc
Confidence 0000111221 45677777899999999 999999999999999432 12344566677777776
Q ss_pred HHHhhCC
Q 013777 294 AVRKYTS 300 (436)
Q Consensus 294 aIR~~~p 300 (436)
.+...+.
T Consensus 185 ~l~~ln~ 191 (673)
T COG1874 185 SLDNLNE 191 (673)
T ss_pred hHHhhhh
Confidence 5555443
No 38
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.83 E-value=0.0046 Score=62.04 Aligned_cols=204 Identities=14% Similarity=0.160 Sum_probs=94.5
Q ss_pred HHHHHHHcCCEEEEEcCC-CCCC--CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCCC
Q 013777 203 AFDWAEKYGVKVIVDLHA-APGS--QNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG 278 (436)
Q Consensus 203 ~v~~a~~~Gi~VilDlH~-~pg~--qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~-~v~g~eL~NEP~~~~ 278 (436)
+++.|+++|+..++-.-. +|.. .||...++ ..+...-.+...+.+..++..++++|+..- .+--++.+|||...-
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~-~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGG-DDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S--SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCC-CccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 678999999987775444 4432 33332221 111111126778999999999999996554 566789999998631
Q ss_pred ---------CChhHHHHHHHHHHHHHHhhCCCeEEEEeCC--C----CC--CC------hhhhhccC-----CCCCcE--
Q 013777 279 ---------VALDTLKSYYKAGYDAVRKYTSTAYVIMSNR--L----GP--AD------HKELLSFA-----SGLSRV-- 328 (436)
Q Consensus 279 ---------~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~--~----~~--~~------~~~~~~~~-----~~~~nv-- 328 (436)
.+.+...++++.+..++++.+.+..|++++. + .. .+ ...|+... ...++|
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v~~ 267 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNVPN 267 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TTEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhccccchh
Confidence 3456778899999999999998887777631 1 10 00 12222211 223343
Q ss_pred EEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhc-CCCeEEeecccccCCC----CCcC--HHH---HHHHHHH
Q 013777 329 VIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTS-NGPLTFVGEWTCEWNV----KDAS--KQD---YQRFANA 398 (436)
Q Consensus 329 v~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~-~~p~v~vGEwg~~~~~----~~~~--~~~---~~~~~~~ 398 (436)
+++-|.|..- .+ ...+..++.. ....+.+. .+..++..||+.--+. .+.. .+. ..-|+..
T Consensus 268 ~i~~HsYwt~------~~-~~~l~~~R~~---~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~ar 337 (384)
T PF14587_consen 268 IISGHSYWTD------SP-WDDLRDIRKQ---LADKLDKYSPGLKYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVAR 337 (384)
T ss_dssp EEEE--TT-S------SS-HHHHHHHHHH---HHHHHHTTSS--EEEE----S----TTT-SSS-HHHHHHH--HHHHHH
T ss_pred heeecccccC------CC-HHHHHHHHHH---HHHHHHhhCcCCceeeeeeeeccCCcccccCCCcccchhHHHHHHHHH
Confidence 6899999541 12 2223333332 22333333 1345899999863221 0111 121 1233333
Q ss_pred HH--HHHccCCCcEEEEceec
Q 013777 399 QL--DVYGRATFGWAYWAHKC 417 (436)
Q Consensus 399 q~--~~~~~~~~Gw~~W~~k~ 417 (436)
++ |+=..+..+|.+|+--.
T Consensus 338 viH~DL~~anassW~wW~a~~ 358 (384)
T PF14587_consen 338 VIHNDLTYANASSWQWWTAIS 358 (384)
T ss_dssp HHHHHHHTS--SEEEEEESEE
T ss_pred HHHhhhhhcccchhHHHHHhc
Confidence 32 33234677999998654
No 39
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.0024 Score=62.04 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCC---CCCCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEee
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHAAP---GSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELI 271 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~~p---g~qng~~~sg~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~ 271 (436)
.++.-|.+++.|++|||.+ |.-+ .+|.+.+..+. ++. +...+...+.+..+++||++. +..||++
T Consensus 80 ~Fe~AD~ia~FAr~h~m~l----hGHtLvW~~q~P~W~~~~-----e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVV 148 (345)
T COG3693 80 NFEAADAIANFARKHNMPL----HGHTLVWHSQVPDWLFGD-----ELSKEALAKMVEEHIKTVVGRYKGS--VASWDVV 148 (345)
T ss_pred CccchHHHHHHHHHcCCee----ccceeeecccCCchhhcc-----ccChHHHHHHHHHHHHHHHHhccCc--eeEEEec
Confidence 4788899999999999975 4322 23333332221 133 456667778999999999986 7889999
Q ss_pred cCCCCCCCC--hhHH------HHHHHHHHHHHHhhCCCeEEEEeCC-CCCCCh---------hhhhccCCCCCcEEEEEe
Q 013777 272 NEPLAPGVA--LDTL------KSYYKAGYDAVRKYTSTAYVIMSNR-LGPADH---------KELLSFASGLSRVVIDVH 333 (436)
Q Consensus 272 NEP~~~~~~--~~~~------~~~~~~~~~aIR~~~p~~~Viv~~~-~~~~~~---------~~~~~~~~~~~nvv~~~H 333 (436)
|||...... ...| .++++.++..-|+.+|+..+++.+- ...... ..+..-..+-+.+-+..|
T Consensus 149 NE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH 228 (345)
T COG3693 149 NEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSH 228 (345)
T ss_pred ccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeee
Confidence 999862111 1122 2478889999999999999888752 211111 122222245678999999
Q ss_pred ecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccC--CCCCcCHHHHHH---HHHHHHHHHc--cC
Q 013777 334 YYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEW--NVKDASKQDYQR---FANAQLDVYG--RA 406 (436)
Q Consensus 334 ~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~--~~~~~~~~~~~~---~~~~q~~~~~--~~ 406 (436)
+=.- + .+.+. .. ..+....+. |-+++|+|.-..- ..+++.+...+. ..+.+...+. ..
T Consensus 229 ~~~~----~--~~~~~----~~----~a~~~~~k~-Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~ 293 (345)
T COG3693 229 FSGD----G--PSIEK----MR----AALLKFSKL-GLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQ 293 (345)
T ss_pred ecCC----C--CCHHH----HH----HHHHHHhhc-CCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3211 1 12221 11 123334455 6569999996543 222222221111 1111222221 12
Q ss_pred CCcEEEEceecC
Q 013777 407 TFGWAYWAHKCE 418 (436)
Q Consensus 407 ~~Gw~~W~~k~~ 418 (436)
-.+-++|.+...
T Consensus 294 v~~it~WGi~D~ 305 (345)
T COG3693 294 VKAITFWGITDR 305 (345)
T ss_pred cceEEEeeeccC
Confidence 457789998874
No 40
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00014 Score=75.15 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=87.1
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~-~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~s 231 (436)
+|..| ++|++.|+++|+++.|+.|+|-...+... .....+..++....+|+...++||.+++.|.+..--|.-
T Consensus 89 ~Yh~y--keDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~L---- 162 (524)
T KOG0626|consen 89 FYHRY--KEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQAL---- 162 (524)
T ss_pred hhhhh--HHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHH----
Confidence 44444 89999999999999999999976654322 234567799999999999999999999999865322211
Q ss_pred CCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 232 ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 232 g~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
.+.+..|. +..++.+.++-+..-++|.|.-.. |-.+|||+.
T Consensus 163 --eDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~--WiT~NEP~v 204 (524)
T KOG0626|consen 163 --EDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKH--WITFNEPNV 204 (524)
T ss_pred --HHHhccccCHHHHHHHHHHHHHHHHHhccccee--eEEecccce
Confidence 12344566 788899999999999999986433 668999983
No 41
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.71 E-value=0.0035 Score=65.78 Aligned_cols=229 Identities=19% Similarity=0.233 Sum_probs=116.9
Q ss_pred HhCCCCEEEecCccccccC------CCCCC----CCc--cc----hHHHHHHHHHHHHHcCCEEEEEcCCCCCCC--CCC
Q 013777 167 SSNGINAVRIPVGWWIAND------PTPPK----PFV--GG----SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ--NGN 228 (436)
Q Consensus 167 a~~G~N~VRipv~~~~~~~------~~~~~----~~~--~~----~l~~ld~~v~~a~~~Gi~VilDlH~~pg~q--ng~ 228 (436)
.-+|++.+|+||+--.+.. ..+.+ .|. .. .+..|+++++. .-+|+++-..-.+|+.. |+.
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~--~~~lki~aSpWSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAI--NPNLKIFASPWSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHH--HTT-EEEEEES---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHh--CCCcEEEEecCCCCHHHccCCc
Confidence 3479999999997322211 11111 111 00 12333333332 23599999999999742 221
Q ss_pred C-CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCC----------CCChhHHHHHHHH-HHHHH
Q 013777 229 E-HSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP----------GVALDTLKSYYKA-GYDAV 295 (436)
Q Consensus 229 ~-~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~-~v~g~eL~NEP~~~----------~~~~~~~~~~~~~-~~~aI 295 (436)
. ..|...+... +.+.+.+.+++.+..+.|+.+- .|.++-+-|||... ..+++..+.|.+. +..++
T Consensus 188 ~~g~g~l~g~~~--~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l 265 (496)
T PF02055_consen 188 MNGGGSLKGSLG--DEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPAL 265 (496)
T ss_dssp SCSS-BBSCGTT--SHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHH
T ss_pred CcCCCccCCCCC--chhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 1 1121111110 3456677777777778888775 78999999999841 1346677888876 77899
Q ss_pred HhhCC--CeEEEEe-CCCCC-CCh-hhhhccC-CCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcC
Q 013777 296 RKYTS--TAYVIMS-NRLGP-ADH-KELLSFA-SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSN 369 (436)
Q Consensus 296 R~~~p--~~~Viv~-~~~~~-~~~-~~~~~~~-~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 369 (436)
|+.++ +..|++- ..+.. ..+ ...+.-+ ...--..+.+|.|.. + ...+.++.+.+ +..
T Consensus 266 ~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g-~------~~~~~l~~~h~----------~~P 328 (496)
T PF02055_consen 266 RKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGG-D------PSPQALDQVHN----------KFP 328 (496)
T ss_dssp HTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTC-S-------HCHHHHHHHH----------HST
T ss_pred HhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCC-C------chhhHHHHHHH----------HCC
Confidence 99876 5555543 22211 111 1222111 112246799999953 1 11122333221 223
Q ss_pred CCeEEeeccccc-CCCC----CcCHHHHHHHHHHHHHHHccCCCcEEEEcee
Q 013777 370 GPLTFVGEWTCE-WNVK----DASKQDYQRFANAQLDVYGRATFGWAYWAHK 416 (436)
Q Consensus 370 ~p~v~vGEwg~~-~~~~----~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k 416 (436)
...++.+|.+.. +... ..+.+...+|....+..+.....||.+|.+-
T Consensus 329 ~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~ 380 (496)
T PF02055_consen 329 DKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLA 380 (496)
T ss_dssp TSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESE
T ss_pred CcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence 456888998643 2111 1123344566777777777677899999864
No 42
>PLN03059 beta-galactosidase; Provisional
Probab=97.57 E-value=0.0013 Score=71.85 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
++-++.+|++|+|+|=.-|.|- +.+|.+ +.|+=....-|.++++.|++.||+|||-.=-+ ..+.+..| |.+.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn-~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY---IcAEw~~G---GlP~ 133 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWN-GHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY---ICAEWNFG---GFPV 133 (840)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcc---eeeeecCC---CCch
Confidence 7889999999999999988764 456654 45654556779999999999999999953211 01111111 2333
Q ss_pred CC------------hhHHHHHHHHHHHHHHHhCC-------CCceeEEEeecCCCCCC-CChhHHHHHHHHHHHHHHhhC
Q 013777 240 WG------------DSNVADTVAVIDFLAARYAN-------RPSLAAIELINEPLAPG-VALDTLKSYYKAGYDAVRKYT 299 (436)
Q Consensus 240 w~------------~~~~~~~~~~~~~lA~ry~~-------~~~v~g~eL~NEP~~~~-~~~~~~~~~~~~~~~aIR~~~ 299 (436)
|- +...++..++++.|+...+. ---|+++++=||=..-. .....=+.|++.+.+..++.+
T Consensus 134 WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 134 WLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred hhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcC
Confidence 31 35556666677777766643 23578899999953210 001122678888888889988
Q ss_pred CCeEEEEeCC
Q 013777 300 STAYVIMSNR 309 (436)
Q Consensus 300 p~~~Viv~~~ 309 (436)
-+.+++.+++
T Consensus 214 i~VPl~t~dg 223 (840)
T PLN03059 214 TGVPWVMCKQ 223 (840)
T ss_pred CCcceEECCC
Confidence 8888888753
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.012 Score=65.14 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=74.1
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
++|++.||++|+|+||.. +| |.. +...++|.++||+||-|.-..- |... ..
T Consensus 324 ~~dl~lmk~~n~N~vRts-Hy-----P~~------------~~~ydLcDelGllV~~Ea~~~~-------~~~~--~~-- 374 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HY-----PNS------------EEFYDLCDELGLLVIDEAMIET-------HGMP--DD-- 374 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CC-----CCC------------HHHHHHHHHhCcEEEEecchhh-------cCCC--CC--
Confidence 789999999999999984 11 211 2467799999999999875431 1110 11
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+...+....-++.+.+|-|++|+|+.|.+.||+..+.. ...++..+.+.+++..+-..
T Consensus 375 --~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~~--------~~~~~~~~k~~d~~r~~~~~ 432 (808)
T COG3250 375 --PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGSN--------HWALYRWFKASDPTRPVQYE 432 (808)
T ss_pred --cchhHHHHHHHHHHHHhccCCCcEEEEeccccccCccc--------cHHHHHHHhhcCCccceecc
Confidence 23456666778889999999999999999999874211 12334455555555555444
No 44
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.27 E-value=0.0092 Score=56.81 Aligned_cols=133 Identities=18% Similarity=0.247 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCCCceeEEEeecCCCCC---CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCC--CCC------Ch-hhh
Q 013777 251 VIDFLAARYANRPSLAAIELINEPLAP---GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL--GPA------DH-KEL 318 (436)
Q Consensus 251 ~~~~lA~ry~~~~~v~g~eL~NEP~~~---~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~--~~~------~~-~~~ 318 (436)
.++.+.+.-.+.+.|+ .+|||... ..+++...+.+++.++.+|. +...|+ ++.. ... .+ ..|
T Consensus 55 ~~~~v~~~~~~~~~ll---~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~-sPa~~~~~~~~~~g~~Wl~~F 128 (239)
T PF11790_consen 55 WLANVQNAHPGSKHLL---GFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLG-SPAVAFTNGGTPGGLDWLSQF 128 (239)
T ss_pred HHHHHHhhccCcccee---eecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEE-CCeecccCCCCCCccHHHHHH
Confidence 4445554422334555 57999875 36778888888888888885 444443 3322 111 11 334
Q ss_pred hccCC-CCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccCCCCCcCHHHHHHHHH
Q 013777 319 LSFAS-GLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRFAN 397 (436)
Q Consensus 319 ~~~~~-~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~~~~~~~~~~~~~~~~ 397 (436)
+.... +..-.++++|.|.. +.+...+.| ..+.+..++||+|+||++.......+.+...+|++
T Consensus 129 ~~~~~~~~~~D~iavH~Y~~--------~~~~~~~~i--------~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~ 192 (239)
T PF11790_consen 129 LSACARGCRVDFIAVHWYGG--------DADDFKDYI--------DDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLR 192 (239)
T ss_pred HHhcccCCCccEEEEecCCc--------CHHHHHHHH--------HHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHH
Confidence 44333 55678999999921 122222222 22222234679999999765444567778899999
Q ss_pred HHHHHHcc
Q 013777 398 AQLDVYGR 405 (436)
Q Consensus 398 ~q~~~~~~ 405 (436)
..+..+++
T Consensus 193 ~~~~~ld~ 200 (239)
T PF11790_consen 193 QALPWLDS 200 (239)
T ss_pred HHHHHHhc
Confidence 88888865
No 45
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.041 Score=52.19 Aligned_cols=207 Identities=15% Similarity=0.180 Sum_probs=126.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
+.||+.|+..+. .||+ ... .-..|..+...+.+.|++|+|-+.-.+..+
T Consensus 66 ~sDLe~l~~~t~-~IR~------Y~s----------DCn~le~v~pAa~~~g~kv~lGiw~tdd~~-------------- 114 (305)
T COG5309 66 ASDLELLASYTH-SIRT------YGS----------DCNTLENVLPAAEASGFKVFLGIWPTDDIH-------------- 114 (305)
T ss_pred HhHHHHhccCCc-eEEE------eec----------cchhhhhhHHHHHhcCceEEEEEeeccchh--------------
Confidence 689999999988 8997 111 124477888899999999999876543211
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCC-Chhh
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPA-DHKE 317 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~-~~~~ 317 (436)
...++ ..+..+ .-|.+.+.|.++-+-||-... ..+.+++-.+..++-.++.+.+-+.+|.-.+.|... +-.+
T Consensus 115 ---~~~~~--til~ay-~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~ 188 (305)
T COG5309 115 ---DAVEK--TILSAY-LPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPE 188 (305)
T ss_pred ---hhHHH--HHHHHH-hccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChH
Confidence 11222 222222 235667888889999997643 467899999999999999988877776655544211 1122
Q ss_pred hhccCCCCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhcCCCeEEeecccccCC-----CCCcCHHHH
Q 013777 318 LLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-----VKDASKQDY 392 (436)
Q Consensus 318 ~~~~~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~p~v~vGEwg~~~~-----~~~~~~~~~ 392 (436)
+. ...+-++.-.|.|. + ..+..+........+...+....-.+ .+++|||-|=..+ ..-.+.++.
T Consensus 189 l~---~~SDfia~N~~aYw--d----~~~~a~~~~~f~~~q~e~vqsa~g~~-k~~~v~EtGWPS~G~~~G~a~pS~anq 258 (305)
T COG5309 189 LC---QASDFIAANAHAYW--D----GQTVANAAGTFLLEQLERVQSACGTK-KTVWVTETGWPSDGRTYGSAVPSVANQ 258 (305)
T ss_pred Hh---hhhhhhhcccchhc--c----ccchhhhhhHHHHHHHHHHHHhcCCC-ccEEEeeccCCCCCCccCCcCCChhHH
Confidence 32 23467888899993 3 22333322222111122222221122 5699999873221 122466778
Q ss_pred HHHHHHHHHHHccCCCcEEEE
Q 013777 393 QRFANAQLDVYGRATFGWAYW 413 (436)
Q Consensus 393 ~~~~~~q~~~~~~~~~Gw~~W 413 (436)
..|++..+..+.+.+...++-
T Consensus 259 ~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 259 KIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHHHhhhhccCccEEEe
Confidence 888888887776666665554
No 46
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=96.96 E-value=0.012 Score=50.93 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCcccccEEEEecCCCc-eEEEcCCCCCCcceEEEEEecCCeEEEEEeCCceEEeecCC----CCceEEEEec-----CC
Q 013777 1 MSTKFQKYIAAESGGGT-IVVANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQG----QGNGLVAVSN-----TA 70 (436)
Q Consensus 1 ~s~~~~~~~~a~~~g~~-~~~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~a~~~-----~~ 70 (436)
+| ..||||+||--|.+ .+--+|.+...-=+=+++.-+...+.||+.-|.|+++.+.. -.+.-+.... ..
T Consensus 13 RS-~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~~~~~~d~~ 91 (142)
T PF04601_consen 13 RS-HHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVVQTDPDRLDSS 91 (142)
T ss_pred Ee-cCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEEecCCccCCCC
Confidence 46 78999999765433 33344444332212233333346789999999999997531 1122233222 22
Q ss_pred CCCceEEEEEcCCCCcceEEeccCCceEEEeeC
Q 013777 71 GYSETFQIVRKDGDSSRVRLSASNGMFIQAISE 103 (436)
Q Consensus 71 ~~~e~f~~~~~~~~~~~v~i~~~nG~~lq~~~~ 103 (436)
-.|| -++. +..|.++..+|.||.++|.
T Consensus 92 ~~We---pvr~---g~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 92 VEWE---PVRD---GFYVKLRHRSGRYLRANGG 118 (142)
T ss_pred ceEE---EecC---CCEEEEEecCCceEEcCCC
Confidence 2343 3443 3579999999999999864
No 47
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.88 E-value=0.083 Score=52.09 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=124.2
Q ss_pred cccchhhhhccCcChhhHHHHHhhhhcCCHHHHHHHH-----hCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHH
Q 013777 131 LRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLS-----SNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFD 205 (436)
Q Consensus 131 ~~~e~~~~~~~G~~~a~~~~~~h~~~~ite~d~~~ia-----~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~ 205 (436)
...+.|...++|.-. ...|--+.+..-++.+= ++||..+|+||.--.+.-...+.+ .++.|..+ +
T Consensus 40 ~~~~~Q~IrGFGg~~-----~~Aw~g~lsaa~l~t~Fgng~~~lg~si~Rv~I~~ndfsl~g~~d~----w~kels~A-k 109 (433)
T COG5520 40 VAAKHQVIRGFGGMN-----SSAWAGDLSAAQLETLFGNGANQLGFSILRVPIDSNDFSLGGSADN----WYKELSTA-K 109 (433)
T ss_pred hhhhhceeecccccc-----cchhhhhhHHHHHHHHhcCCccccCceEEEEEecccccccCCCcch----hhhhcccc-h
Confidence 344556666666311 11233334444455442 489999999996321111111112 12222222 2
Q ss_pred HHHHcCCEEEEEcCCCCCCCCC-CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCCC-C---
Q 013777 206 WAEKYGVKVIVDLHAAPGSQNG-NEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG-V--- 279 (436)
Q Consensus 206 ~a~~~Gi~VilDlH~~pg~qng-~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~-~v~g~eL~NEP~~~~-~--- 279 (436)
-+.++|++|+-.....|.+..- .+..|...+... .+.-..+.+++......++++- .+.++.+-|||.... .
T Consensus 110 ~~in~g~ivfASPWspPa~Mktt~~~ngg~~g~Lk--~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~ 187 (433)
T COG5520 110 SAINPGMIVFASPWSPPASMKTTNNRNGGNAGRLK--YEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWC 187 (433)
T ss_pred hhcCCCcEEEecCCCCchhhhhccCcCCccccccc--hhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcc
Confidence 2788999999998888875211 111111111111 1223344555555556666665 678899999998632 1
Q ss_pred --ChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCC-CChh--hhhccCCCCCcEEEEEeecCcCCCCCCCCChhhhHHHH
Q 013777 280 --ALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP-ADHK--ELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYV 354 (436)
Q Consensus 280 --~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~-~~~~--~~~~~~~~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i 354 (436)
.+++..+|+. +..+.+..+.-|++.+.+.. .++. -+.+...-..-.++..|.|..-- .++.
T Consensus 188 ~wtpQe~~rF~~---qyl~si~~~~rV~~pes~~~~~~~~dp~lnDp~a~a~~~ilg~H~Ygg~v-----------~~~p 253 (433)
T COG5520 188 WWTPQEELRFMR---QYLASINAEMRVIIPESFKDLPNMSDPILNDPKALANMDILGTHLYGGQV-----------SDQP 253 (433)
T ss_pred cccHHHHHHHHH---HhhhhhccccEEecchhcccccccccccccCHhHhcccceeEeeeccccc-----------ccch
Confidence 2233333433 34445555666666543321 1110 11111111223589999996410 0111
Q ss_pred HHhhhhhHHHhhh--cCCCeEEeecccc-cCCCCCcCHHHHHHHHHHHHHHHccCCCcEEEEceecC
Q 013777 355 NNQRASDLGAVTT--SNGPLTFVGEWTC-EWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 418 (436)
Q Consensus 355 ~~~~~~~~~~~~~--~~~p~v~vGEwg~-~~~~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~ 418 (436)
. .+.+ -.++.+|+.|... ++++.++.++...-+........+...-|+.+|-+.-+
T Consensus 254 ~--------~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~ 312 (433)
T COG5520 254 Y--------PLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLD 312 (433)
T ss_pred h--------hHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeec
Confidence 0 1112 2266789999854 45543434333333333333334445668899987654
No 48
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.54 E-value=0.1 Score=56.68 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCCCEEEe-cCcccc-----ccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC--
Q 013777 160 DEDFKFLSSNGINAVRI-PVGWWI-----ANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ-- 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~~~~-----~~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q-- 225 (436)
+.-++.|+++|+|+|=| ||.... ..++.. +++- =+..+.|.++|+.|.++||+||||+ |..+...
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~-~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 238 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSR-FGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGL 238 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccc-cCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchh
Confidence 44459999999999999 874211 111110 1110 1457899999999999999999997 5433210
Q ss_pred C---C---CCCCCCC-CCCCCCC--------hhHHHHHHHHHHHHHHHhCCCCceeEEEee---------cCCCC--C--
Q 013777 226 N---G---NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI---------NEPLA--P-- 277 (436)
Q Consensus 226 n---g---~~~sg~~-~~~~~w~--------~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~---------NEP~~--~-- 277 (436)
. + +.+.... .....|. +..++..++..+...+.|.=+- + =+|.+ .+|.. +
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG-~-R~D~v~~~~~~~~~~~~~~~~~~~ 316 (613)
T TIGR01515 239 AEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDG-L-RVDAVASMLYLDYSRDEGEWSPNE 316 (613)
T ss_pred hccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcE-E-EEcCHHHhhhhccccccccccccc
Confidence 0 0 0011000 0112333 4455666677777777764321 1 12221 12210 0
Q ss_pred --CCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 278 --GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 278 --~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
+.....-..|.+++.+.||+..|+.++|-+.
T Consensus 317 ~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 349 (613)
T TIGR01515 317 DGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEE 349 (613)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 0112234679999999999999998888763
No 49
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.45 E-value=0.14 Score=55.87 Aligned_cols=144 Identities=18% Similarity=0.247 Sum_probs=79.6
Q ss_pred HHHHHHHHhCCCCEEEe-cCc------cccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-
Q 013777 160 DEDFKFLSSNGINAVRI-PVG------WWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~------~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q- 225 (436)
++-++.|+++|+|+|=| ||. .| ..++. .+++- =+..+.|+++|+.|.++||+||||+ |..+...
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~-GY~~~~y~~i~~~-~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~ 251 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSW-GYQLTGYFAPTSR-YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDG 251 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCC-CCCCcCcCcCCCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 44469999999999986 552 11 11111 01111 1468899999999999999999997 4332210
Q ss_pred -CCCC------CCCC-CCCCCCCC--------hhHHHHHHHHHHHHHHHhCCCCceeEEEee-cC------------C--
Q 013777 226 -NGNE------HSAT-RDGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE------------P-- 274 (436)
Q Consensus 226 -ng~~------~sg~-~~~~~~w~--------~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~-NE------------P-- 274 (436)
..++ +... ......|. +..++..++.++...+.|.=+- + -+|.. +. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG-~-R~D~~~~~~~~d~~~~~~~~~~~ 329 (633)
T PRK12313 252 LAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDG-L-RVDAVSNMLYLDYDEEGEWTPNK 329 (633)
T ss_pred ccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcE-E-EEcChhhhhhcccccccCcCCcc
Confidence 0000 0000 00112342 4455566677777776664321 0 01211 11 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 275 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.....+. .-..+.+.+.+.||+..|+.++|-+.
T Consensus 330 ~~~~~~~-~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 330 YGGRENL-EAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred cCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 1001111 34578999999999999998777663
No 50
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.29 E-value=0.14 Score=56.17 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCCCEEEe-cCcc------ccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-
Q 013777 160 DEDFKFLSSNGINAVRI-PVGW------WIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~~------~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q- 225 (436)
++-+..|+++|+|+|=| |+.- |- .++. .+++. -+..+.|.++|+.|.++||+||||+ |......
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wG-Y~~~~~fa~~~~-~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~ 331 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFG-YHVTNFFAVSSR-SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLD 331 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCC-cCcccCcccccc-cCCHHHHHHHHHHHHHCCCEEEEEeccccccccccc
Confidence 56799999999999988 4411 10 1111 11111 1356889999999999999999997 3322111
Q ss_pred --C-------CCCCCCCCCCCCCCC--------hhHHHHHHHHHHHHHHHhCCC-------Ccee------EEEe---ec
Q 013777 226 --N-------GNEHSATRDGFQEWG--------DSNVADTVAVIDFLAARYANR-------PSLA------AIEL---IN 272 (436)
Q Consensus 226 --n-------g~~~sg~~~~~~~w~--------~~~~~~~~~~~~~lA~ry~~~-------~~v~------g~eL---~N 272 (436)
+ .+.+.+.......|. +..++..++.++...+.|.=+ ..++ +.+. .|
T Consensus 332 gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~ 411 (758)
T PLN02447 332 GLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYN 411 (758)
T ss_pred cccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcc
Confidence 1 122222111112343 334455556666666665322 1221 0011 12
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 273 EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 273 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
|-.....+ ..-..|.+.+-..|++..|+.+.|.++
T Consensus 412 ~~~g~~~d-~~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 412 EYFGMATD-VDAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred cccCCccC-hHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 31211123 344678999999999999999888764
No 51
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.069 Score=54.52 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCCEEEecCcc---cc-c-c--CC--C----------------------CCCCCcc----chHHHHHHHH
Q 013777 160 DEDFKFLSSNGINAVRIPVGW---WI-A-N--DP--T----------------------PPKPFVG----GSSKVLDNAF 204 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~---~~-~-~--~~--~----------------------~~~~~~~----~~l~~ld~~v 204 (436)
|..++.|+=+|||.+=-|.+- |. . . .- . -++|..+ ..+-.-.+++
T Consensus 81 eR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIi 160 (666)
T KOG2233|consen 81 EREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRII 160 (666)
T ss_pred HhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999888652 11 0 0 00 0 0123322 2344456799
Q ss_pred HHHHHcCCEEEEEcCC----------CCCCC----CCCCCCCCCC--CC--CCCChhHHHHHHHHHHHHHHHhCCCCcee
Q 013777 205 DWAEKYGVKVIVDLHA----------APGSQ----NGNEHSATRD--GF--QEWGDSNVADTVAVIDFLAARYANRPSLA 266 (436)
Q Consensus 205 ~~a~~~Gi~VilDlH~----------~pg~q----ng~~~sg~~~--~~--~~w~~~~~~~~~~~~~~lA~ry~~~~~v~ 266 (436)
+...+.||.++|--.+ .|.+. ..+++..++- .. ....+-.++---.+++.+.+.|.+..+|.
T Consensus 161 drm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy 240 (666)
T KOG2233|consen 161 DRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIY 240 (666)
T ss_pred HHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCccccc
Confidence 9999999999985442 12110 0111111110 00 00113345566689999999999999999
Q ss_pred EEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 267 AIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 267 g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+-|..||-..+...++-++...+++|++.+++|++++-++.
T Consensus 241 ~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 241 SADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred ccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 99999998877778889999999999999999999876665
No 52
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.17 E-value=0.18 Score=53.92 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=76.2
Q ss_pred HHHHHHHhCCCCEEEe-cCc------cccccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCCC
Q 013777 161 EDFKFLSSNGINAVRI-PVG------WWIANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNG 227 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRi-pv~------~~~~~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~qng 227 (436)
+.++.|+++|+|+|=| ||. .| ..++.. +++- =+..+.|.++|+.|.++||+||||+ |..+.+..-
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~-GY~~~~~~~~~~~-~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~ 192 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGW-GYDGVLPYAPHNA-YGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYL 192 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCC-CCCccCccccccc-cCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccccc
Confidence 3489999999999998 542 11 111110 1110 1468899999999999999999997 544322110
Q ss_pred CCCCC--CCCCCCCCC-------h---hHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHH
Q 013777 228 NEHSA--TRDGFQEWG-------D---SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAV 295 (436)
Q Consensus 228 ~~~sg--~~~~~~~w~-------~---~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aI 295 (436)
..... .......|. + ..++..++..+..++.|+=+- + =+|++..-.. ..-..+.+++.+++
T Consensus 193 ~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDG-f-R~D~~~~~~~-----~~~~~~l~~~~~~~ 265 (542)
T TIGR02402 193 PRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDG-L-RLDAVHAIAD-----TSAKHILEELAREV 265 (542)
T ss_pred cccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcE-E-EEeCHHHhcc-----ccHHHHHHHHHHHH
Confidence 00000 001112332 2 444555666666666664221 1 1343332210 11246888888999
Q ss_pred HhhCCC---eEEEEe
Q 013777 296 RKYTST---AYVIMS 307 (436)
Q Consensus 296 R~~~p~---~~Viv~ 307 (436)
|+..|+ .++|.+
T Consensus 266 ~~~~p~~~~~~li~E 280 (542)
T TIGR02402 266 HELAAELRPVHLIAE 280 (542)
T ss_pred HHHCCCCceEEEEEe
Confidence 999887 555444
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=96.14 E-value=0.021 Score=51.19 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCCEEEecCccccc--------cCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIA--------NDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~--------~~~~~~~~~~--~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
+.++.|+++|+|+|-|+=.+... .++....... -+..+.|+++|+.|+++||+||+|+-
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44779999999999995432211 1111110011 14689999999999999999999985
No 54
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.12 E-value=0.007 Score=59.66 Aligned_cols=170 Identities=21% Similarity=0.239 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH-HH---HhC-CCC-ceeEEE
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFL-AA---RYA-NRP-SLAAIE 269 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~l-A~---ry~-~~~-~v~g~e 269 (436)
.+++.|++.+.|++-|+++|..|-+..|... .....+.--|..- |+ +|. +.. .|.+||
T Consensus 107 t~~rwd~l~~F~~~tG~~liFgLNAL~g~~~----------------~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WE 170 (319)
T PF03662_consen 107 TMSRWDELNNFAQKTGLKLIFGLNALLGRRQ----------------LADRDWDGSWNSSNAQSLLKYTASKGYNIDSWE 170 (319)
T ss_dssp -----HHHHHHHHHHT-EEEEEE-TTTS-HH----------------HHHHHHHHHHHHH-TTTEEEEEESS-GGG----
T ss_pred chhHHHHHHHHHHHhCCEEEEEecccCCCCC----------------CCCCCcCCCCChHHHHHHHHHHHHcCCCccccc
Confidence 4678999999999999999999988765210 0000111222211 11 121 112 466899
Q ss_pred eecCCCCCC----CChhHHHHHHHH---HHHHHHhh-CCCeEEEEeCCCCCCC-hhhhhccCCCCCcEEEEEeecCcCCC
Q 013777 270 LINEPLAPG----VALDTLKSYYKA---GYDAVRKY-TSTAYVIMSNRLGPAD-HKELLSFASGLSRVVIDVHYYNLFSN 340 (436)
Q Consensus 270 L~NEP~~~~----~~~~~~~~~~~~---~~~aIR~~-~p~~~Viv~~~~~~~~-~~~~~~~~~~~~nvv~~~H~Y~~~~~ 340 (436)
|.|||.... ++..++.+=+.+ +++.|... .+...|+-.++..... +.+|+....+..-.+++.|+|+. ++
T Consensus 171 LGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~vT~H~Y~l-g~ 249 (319)
T PF03662_consen 171 LGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAVTWHHYNL-GS 249 (319)
T ss_dssp ----HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEEEEEEEEE---
T ss_pred cccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEEEEEecCC-CC
Confidence 999998532 333333322222 22222222 2333343333322122 24555442222346789999964 21
Q ss_pred CCCCCChh-----hhHHHHHHhhhhhHHHhhhc--CCCeEEeecccccCC
Q 013777 341 NFNGLNVQ-----QNIDYVNNQRASDLGAVTTS--NGPLTFVGEWTCEWN 383 (436)
Q Consensus 341 ~~~~~~~~-----~~i~~i~~~~~~~~~~~~~~--~~p~v~vGEwg~~~~ 383 (436)
.-.....+ ..++.+.... +.+..+.+. .+.+++|||-|.+++
T Consensus 250 g~d~~l~~~~l~p~~Ld~~~~~~-~~~~~~v~~~~p~~~~WlGEtg~Ay~ 298 (319)
T PF03662_consen 250 GRDPALIEDFLNPSYLDTLADTF-QKLQQVVQEYGPGKPVWLGETGSAYN 298 (319)
T ss_dssp TT-TT-HHHHTS--HHHHHHHHH-HHHH-----HHH---EEEEEEEEEST
T ss_pred CchHHHHHHhcChhhhhHHHHHH-HHHhhhhcccCCCCCeEEeCcccccC
Confidence 11111111 1223332221 122222222 234699999998775
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.10 E-value=0.24 Score=54.81 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCCCEEEe-cCcccc-----ccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC--
Q 013777 160 DEDFKFLSSNGINAVRI-PVGWWI-----ANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ-- 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~~~~-----~~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q-- 225 (436)
++-+..|+++|+|+|=| ||.-.. ..++.. +++- =+..+.|.++|+.|.++||+||||+ |..+...
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 347 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGL 347 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccch
Confidence 44468999999999988 552100 111111 1111 1468899999999999999999997 5433210
Q ss_pred CC------CCCCCCC-CCCCCCC--------hhHHHHHHHHHHHHHHHhCCCCceeEEEee-cC---------------C
Q 013777 226 NG------NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE---------------P 274 (436)
Q Consensus 226 ng------~~~sg~~-~~~~~w~--------~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~-NE---------------P 274 (436)
.. +.+.... .....|. +..++..++..+...++|.=+- +-+|.+ +. +
T Consensus 348 ~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG--~R~D~v~~~~~~~~~~~~g~~~~~~ 425 (726)
T PRK05402 348 ARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDG--LRVDAVASMLYLDYSRKEGEWIPNI 425 (726)
T ss_pred hccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcE--EEECCHHHhhhcccccccccccccc
Confidence 00 0111000 1122342 4445556666666666664221 112211 22 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 275 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.. +.....-..+.+++.+.||+..|+.++|-+.
T Consensus 426 ~~-~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~ 458 (726)
T PRK05402 426 YG-GRENLEAIDFLRELNAVVHEEFPGALTIAEE 458 (726)
T ss_pred cc-CcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 11 1111234678999999999999998877763
No 56
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.90 E-value=2.4 Score=45.98 Aligned_cols=136 Identities=16% Similarity=0.222 Sum_probs=75.3
Q ss_pred HHHHHHHhCCCCEEEe-cCcccc-------------ccCCCC---CCC-Cc------cchHHHHHHHHHHHHHcCCEEEE
Q 013777 161 EDFKFLSSNGINAVRI-PVGWWI-------------ANDPTP---PKP-FV------GGSSKVLDNAFDWAEKYGVKVIV 216 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRi-pv~~~~-------------~~~~~~---~~~-~~------~~~l~~ld~~v~~a~~~Gi~Vil 216 (436)
+-++.|+++|+|+|=| ||.-.. ..++.. +++ |. .+..+.|+++|+.|.++||+|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999988 553110 111110 000 11 11368899999999999999999
Q ss_pred Ec---CCCCCCCCCCC-----------CCCCCCCCCCCC-------hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 217 DL---HAAPGSQNGNE-----------HSATRDGFQEWG-------DSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 217 Dl---H~~pg~qng~~-----------~sg~~~~~~~w~-------~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
|+ |...+..+.+. ..|.......|. +..++..++.++..++.|+=+ .+ =+|++..-
T Consensus 248 DvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iD-Gf-R~D~~~~~- 324 (605)
T TIGR02104 248 DVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNID-GF-RFDLMGIH- 324 (605)
T ss_pred EEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCC-EE-EEechhcC-
Confidence 97 54321111111 001000001111 344455566666666666322 22 25656332
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 276 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+ ..+.+++.++|++..|+.+++-+
T Consensus 325 ----~----~~~~~~~~~~~~~~~p~~~ligE 348 (605)
T TIGR02104 325 ----D----IETMNEIRKALNKIDPNILLYGE 348 (605)
T ss_pred ----C----HHHHHHHHHHHHhhCCCeEEEEc
Confidence 2 23566778888999998776654
No 57
>PLN02960 alpha-amylase
Probab=95.73 E-value=0.42 Score=53.11 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=83.3
Q ss_pred CHHHHHHHHhCCCCEEEe-cCcc------ccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRI-PVGW------WIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 225 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRi-pv~~------~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q 225 (436)
+++-+..|+++|+|+|=| ||.- | ..++. .+++- =+..+.|+.+|+.|.++||+||||+ |..+...
T Consensus 419 ~e~~LdYLk~LGvt~IeLmPv~e~~~~~sw-GY~~~~yfa~~~~-yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~ 496 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQLIGVQEHKDYSSV-GYKVTNFFAVSSR-FGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEM 496 (897)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCC-CCCcccCCCcccc-cCCHHHHHHHHHHHHHCCCEEEEEecccccCCccc
Confidence 355699999999999998 5521 1 01111 11111 1457899999999999999999997 5544321
Q ss_pred CC----------CCCCCCCCCCCCCC--------hhHHHHHHHHHHHHHHHhCCC-------CceeEEE--eecCCCC--
Q 013777 226 NG----------NEHSATRDGFQEWG--------DSNVADTVAVIDFLAARYANR-------PSLAAIE--LINEPLA-- 276 (436)
Q Consensus 226 ng----------~~~sg~~~~~~~w~--------~~~~~~~~~~~~~lA~ry~~~-------~~v~g~e--L~NEP~~-- 276 (436)
++ +.+.+.......|. +..++..++......+.|.=+ .+++-.+ ...++..
T Consensus 497 ~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~ 576 (897)
T PLN02960 497 VGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLD 576 (897)
T ss_pred cchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCccc
Confidence 11 11111111123344 334455566666666666432 1222111 0111110
Q ss_pred ---CCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 277 ---PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 277 ---~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.......-..|++.+-..|++..|+.++|.++
T Consensus 577 ~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 577 EYCNQYVDRDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred ccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 00112345678888899999999999888874
No 58
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.69 E-value=0.43 Score=51.63 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCEEEe-cCccccccCCCCCCCC---cc--chHHHHHHHHHHHHHcCCEEEEEc
Q 013777 160 DEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPF---VG--GSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~~~~~~~~~~~~~~---~~--~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.+-++.|+++|+|+|=| ||.--..........| ++ |..+.|+++|+.|+++||+||||+
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35589999999999998 4421000000001111 11 468999999999999999999998
No 59
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=95.64 E-value=0.081 Score=57.57 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=47.3
Q ss_pred hcCCHHHHHHHHhCCCCEEEe-cCccccccC--------------CC---CCC-CCc-----cchHHHHHHHHHHHHHcC
Q 013777 156 SYITDEDFKFLSSNGINAVRI-PVGWWIAND--------------PT---PPK-PFV-----GGSSKVLDNAFDWAEKYG 211 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRi-pv~~~~~~~--------------~~---~~~-~~~-----~~~l~~ld~~v~~a~~~G 211 (436)
....+..|+.|+++|+++|.| ||..+...+ |. .|+ .|. .+....|+.+|+.+.++|
T Consensus 199 gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaG 278 (697)
T COG1523 199 GLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAG 278 (697)
T ss_pred hhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcC
Confidence 334456699999999999998 775432211 10 001 121 236889999999999999
Q ss_pred CEEEEEc---CCCCC
Q 013777 212 VKVIVDL---HAAPG 223 (436)
Q Consensus 212 i~VilDl---H~~pg 223 (436)
|.||||+ |.+.|
T Consensus 279 I~VILDVVfNHTae~ 293 (697)
T COG1523 279 IEVILDVVFNHTAEG 293 (697)
T ss_pred CEEEEEEeccCcccc
Confidence 9999998 77543
No 60
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=95.60 E-value=0.046 Score=53.97 Aligned_cols=170 Identities=19% Similarity=0.216 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccc-----c--------------CCC------------CCCCC----ccchHHHHHHHH
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIA-----N--------------DPT------------PPKPF----VGGSSKVLDNAF 204 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~-----~--------------~~~------------~~~~~----~~~~l~~ld~~v 204 (436)
|+.|+.||=.|+|.+=-+++-... . .|. =++|. .+...+.=.+++
T Consensus 22 EreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl 101 (333)
T PF05089_consen 22 EREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQKKIL 101 (333)
T ss_dssp HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999988776653110 0 010 01232 234566667799
Q ss_pred HHHHHcCCEEEEEcCC----------CCCC---CCCCCCCCCCCCCCCCC----hhHHHHHHHHHHHHHHHhCCCCceeE
Q 013777 205 DWAEKYGVKVIVDLHA----------APGS---QNGNEHSATRDGFQEWG----DSNVADTVAVIDFLAARYANRPSLAA 267 (436)
Q Consensus 205 ~~a~~~Gi~VilDlH~----------~pg~---qng~~~sg~~~~~~~w~----~~~~~~~~~~~~~lA~ry~~~~~v~g 267 (436)
+..++.||..||=-.. .|.. .-+.++.-.+ +.|- +...+-...+++...+.|. ...+.+
T Consensus 102 ~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~---~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y~ 177 (333)
T PF05089_consen 102 DRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCR---PYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIYA 177 (333)
T ss_dssp HHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE-----EEE-SS--HHHHHHHHHHHHHHHHH----SEEE
T ss_pred HHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCC---CceeCCCCchHHHHHHHHHHHHHHhcC-CCceeC
Confidence 9999999999994321 0111 0000100000 0111 2344555678888889998 778999
Q ss_pred EEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC------C-CCCCChhhhhccCCCCCcEEEEEe
Q 013777 268 IELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN------R-LGPADHKELLSFASGLSRVVIDVH 333 (436)
Q Consensus 268 ~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~------~-~~~~~~~~~~~~~~~~~nvv~~~H 333 (436)
.|+.||-..+....+.+.+..+.+++++++.+|+++-++.+ . |.......++.-.+...-+|+|..
T Consensus 178 ~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~fW~~~~~~a~L~~Vp~~~mliLDL~ 250 (333)
T PF05089_consen 178 ADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDPFWTPNPIKALLSGVPKGRMLILDLF 250 (333)
T ss_dssp --TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE--------BTTBS-HHHHTT-SGGGEEEEETT
T ss_pred CCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcccccccccccCcchHHHHHcCCCCCCeEEEEcc
Confidence 99999977655666779999999999999999998766653 1 322222444443334455677654
No 61
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=95.41 E-value=0.051 Score=49.97 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=73.5
Q ss_pred ccccEEEEecCCCceEEEcCCC---CCCcceEEEEEecCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEE
Q 013777 4 KFQKYIAAESGGGTIVVANRTS---ASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVR 80 (436)
Q Consensus 4 ~~~~~~~a~~~g~~~~~anr~~---~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~ 80 (436)
.-|.||-|+--|..-|-+--.. ..+=|.|.+..+++++++|++-=|+|++++. .+.|++.+.++|+-|.|..|-
T Consensus 55 ~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki~dsrIaLKsGyGKYlsins---dglvvg~qeAvG~~EQw~~vF 131 (246)
T KOG3962|consen 55 DDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKISDSRIALKSGYGKYLSINS---DGLVVGRQEAVGSREQWEPVF 131 (246)
T ss_pred cCceEEEEEecCceeeccCCccccCCCchhhEEEEEccCceEEecccccceeeecC---CccEEEehhhcCcHhhchhhh
Confidence 3477887766665655554333 3467899999999999999999999999997 567999999999999998777
Q ss_pred cCCCCcceEEeccCCceEEEe
Q 013777 81 KDGDSSRVRLSASNGMFIQAI 101 (436)
Q Consensus 81 ~~~~~~~v~i~~~nG~~lq~~ 101 (436)
.. .++.+-++|+.|...+
T Consensus 132 q~---~r~a~~as~s~~~~~~ 149 (246)
T KOG3962|consen 132 QE---GRMALLASNSCFIRCN 149 (246)
T ss_pred hc---cceEEeeccceeEEec
Confidence 64 4677888888887654
No 62
>PLN02877 alpha-amylase/limit dextrinase
Probab=95.35 E-value=0.4 Score=54.00 Aligned_cols=112 Identities=8% Similarity=0.007 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCC----CCC-----------CCCCCCCCCCCC------hhHHHHHHHH
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN----GNE-----------HSATRDGFQEWG------DSNVADTVAV 251 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~qn----g~~-----------~sg~~~~~~~w~------~~~~~~~~~~ 251 (436)
....++++|+.|.++||+||||+ |...++.. ..+ ..|......-+. +...+..++.
T Consensus 464 RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDs 543 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDD 543 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHH
Confidence 45679999999999999999997 55322110 000 011100000000 2233455678
Q ss_pred HHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 013777 252 IDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 311 (436)
Q Consensus 252 ~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 311 (436)
++..++.|+=+ .. =|||+..-.. .+....+...+++...++.++...+++++.+|.
T Consensus 544 l~yW~~ey~VD-GF-RFDlmg~i~~--~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 544 LLNWAVNYKVD-GF-RFDLMGHLMK--RTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHHHHHhCCC-EE-EEEccccccH--HHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 88888888533 22 3788876431 111222222333322333345445666777774
No 63
>PLN02161 beta-amylase
Probab=95.34 E-value=0.29 Score=50.70 Aligned_cols=134 Identities=18% Similarity=0.314 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEEcCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~--VilDlH~~pg~qng~~~sg~~~~~ 237 (436)
+..++.||++|+.-|=++| ||-..+...|..| .+....++++.+++.||+ |||..|..-|.- | +..+ ..-
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNv-G-d~~~--IpL 191 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHSNMHLF-G-GKGG--ISL 191 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCCC-C-CccC--ccC
Confidence 7889999999999999999 7766666556666 578888999999999997 567888754311 1 1111 122
Q ss_pred CCCChhHHHHHHHHHHHHHH----HhCC-----CCceeEEEeecCCCCCCC-ChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 238 QEWGDSNVADTVAVIDFLAA----RYAN-----RPSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 238 ~~w~~~~~~~~~~~~~~lA~----ry~~-----~~~v~g~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+.| +++...+ -|+| ++.-+.+-+=|+|...+- +.+.+.+|++..-+.....-.+.++-|.
T Consensus 192 P~W----------V~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I~eI~ 261 (531)
T PLN02161 192 PLW----------IREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVIEEIS 261 (531)
T ss_pred CHH----------HHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 333 1111111 1333 234456777788986543 4577888888888877776545444444
Q ss_pred CCCC
Q 013777 308 NRLG 311 (436)
Q Consensus 308 ~~~~ 311 (436)
-+.|
T Consensus 262 VGlG 265 (531)
T PLN02161 262 IGLG 265 (531)
T ss_pred eccc
Confidence 3333
No 64
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.23 E-value=1.4 Score=43.62 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=74.3
Q ss_pred HHHHHHHHhCCCCEEEecCcccc---ccCCCCCCC--C--ccchHHHHHHHHHHHHHcCCEEEEEcCCCCCC----CCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWI---ANDPTPPKP--F--VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS----QNGN 228 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~---~~~~~~~~~--~--~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~----qng~ 228 (436)
++-++.|++.|+|+|=|.|--.. ..+...+.. . ......-+..+++.++++|||+|-=+..+... .++.
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe 95 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPE 95 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChh
Confidence 57799999999999999874211 011111100 0 11123568999999999999999755543211 0110
Q ss_pred CC----CCC--CC-CCCCCC----hhHHHHHHHHHHHHHHH--------hCCCCc---eeEEEeecCCCCCCCChhHHHH
Q 013777 229 EH----SAT--RD-GFQEWG----DSNVADTVAVIDFLAAR--------YANRPS---LAAIELINEPLAPGVALDTLKS 286 (436)
Q Consensus 229 ~~----sg~--~~-~~~~w~----~~~~~~~~~~~~~lA~r--------y~~~~~---v~g~eL~NEP~~~~~~~~~~~~ 286 (436)
.. .|. .+ ....|- ++..+..+++.+.+|+. |-..|. .-.. ...++.......+.+..
T Consensus 96 ~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l-~y~~~~~~~~r~~aI~~ 174 (316)
T PF13200_consen 96 WAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGL-DYSENDTEESRVDAITD 174 (316)
T ss_pred hEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCCCCccccc-ccCCCCCcchHHHHHHH
Confidence 00 010 00 112354 34455556666666652 111222 0000 01112111113477899
Q ss_pred HHHHHHHHHHhhCCC
Q 013777 287 YYKAGYDAVRKYTST 301 (436)
Q Consensus 287 ~~~~~~~aIR~~~p~ 301 (436)
|.+.+.+.+++.+-.
T Consensus 175 Fl~~a~~~l~~~~v~ 189 (316)
T PF13200_consen 175 FLAYAREELHPYGVP 189 (316)
T ss_pred HHHHHHHHHhHcCCC
Confidence 999999999987643
No 65
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=95.23 E-value=0.61 Score=53.60 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-----CCCCC----CCCCC----C-CCCCC-hhHHHHHHHHHHHHHH
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ-----NGNEH----SATRD----G-FQEWG-DSNVADTVAVIDFLAA 257 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q-----ng~~~----sg~~~----~-~~~w~-~~~~~~~~~~~~~lA~ 257 (436)
..+.|.++|+.|.++||+||||+ |....+. .++.+ .|... + ..... +..++..++.++..++
T Consensus 553 ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 553 RIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred cHHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 36889999999999999999997 4432210 00000 01000 0 00001 3344556677888888
Q ss_pred HhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 013777 258 RYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 310 (436)
Q Consensus 258 ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 310 (436)
.|+=+ . +=||++.. .+. .+++.+..++++.+|+.+++ +.+|
T Consensus 633 ey~VD-G-FRfDl~g~-----~d~----~~~~~~~~~l~~~dP~~~li-GE~W 673 (1111)
T TIGR02102 633 EFKVD-G-FRFDMMGD-----HDA----ASIEIAYKEAKAINPNIIMI-GEGW 673 (1111)
T ss_pred hcCCc-E-EEEecccc-----CCH----HHHHHHHHHHHHhCcCEEEE-Eecc
Confidence 77533 2 23777753 122 35566777888889976555 4444
No 66
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.20 E-value=0.67 Score=53.74 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCCEEEe-cCc------cccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-
Q 013777 160 DEDFKFLSSNGINAVRI-PVG------WWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~------~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q- 225 (436)
++-++.|+++|+|+|=| ||. .| ..++. .+++- =+..+.|.++|+.|.++||+||||+ |..+..-
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~sw-GY~~~~y~ap~~r-yGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~ 846 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSW-GYQVTSYFAPTSR-FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWA 846 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCC-CCCccccCCcCcc-cCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhh
Confidence 45589999999999977 652 12 11211 11110 1467889999999999999999997 4322110
Q ss_pred ----CC---CCCCCCC-CCCCCCC--------hhHHHHHHHHHHHHHHHhCCCC----ceeE---EEee-----cCCCCC
Q 013777 226 ----NG---NEHSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRP----SLAA---IELI-----NEPLAP 277 (436)
Q Consensus 226 ----ng---~~~sg~~-~~~~~w~--------~~~~~~~~~~~~~lA~ry~~~~----~v~g---~eL~-----NEP~~~ 277 (436)
.+ +.|.... .....|. +..++..++...+..++|.=+- .|.. .|-- -.|...
T Consensus 847 l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~ 926 (1224)
T PRK14705 847 LAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRF 926 (1224)
T ss_pred hhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhccccccccccccccc
Confidence 00 1111111 1123443 3444555666677777765432 1110 0100 012211
Q ss_pred C-CChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 278 G-VALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 278 ~-~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+ .....-..|.+++...|++..|+.++|-+
T Consensus 927 gg~en~~ai~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 927 GGRENLEAISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred CCccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1 11123467999999999999999888776
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=95.02 E-value=0.048 Score=52.90 Aligned_cols=58 Identities=26% Similarity=0.400 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCCEEEecCccccccC--CCCCCCC---c--cchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIAND--PTPPKPF---V--GGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~~~--~~~~~~~---~--~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+.++.|+++|+|+|-|+=-+..-.. +..+..| + =+..+.|.++|+.|.++||+||||+
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4588999999999999532221000 0000001 1 1578999999999999999999998
No 68
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=95.00 E-value=0.48 Score=52.04 Aligned_cols=58 Identities=24% Similarity=0.506 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCEEEe-cCcccc--------------ccCCC---CCCC-Ccc-chHHHHHHHHHHHHHcCCEEEEEc
Q 013777 161 EDFKFLSSNGINAVRI-PVGWWI--------------ANDPT---PPKP-FVG-GSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRi-pv~~~~--------------~~~~~---~~~~-~~~-~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.-++.|+++|+|+|=| ||.-.. ..++. .+++ |.. +..+.|.++|+.|.++||+||||+
T Consensus 188 ~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 188 AMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred chhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3599999999999988 442110 11111 0111 211 357889999999999999999997
No 69
>PLN02803 beta-amylase
Probab=94.98 E-value=0.4 Score=49.98 Aligned_cols=134 Identities=17% Similarity=0.390 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEEcCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~--VilDlH~~pg~qng~~~sg~~~~~ 237 (436)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||+ ||+..|..-| |-.+.+ ...-
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~--~IpL 181 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQCGG--NVGDSC--SIPL 181 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC--CCCCcc--cccC
Confidence 6789999999999999999 7766666556666 578888999999999997 5678887543 211111 1122
Q ss_pred CCCChhHHHHHHHHHHHHHH----HhCC-----CCceeEEEeecCCCCCCC-ChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 238 QEWGDSNVADTVAVIDFLAA----RYAN-----RPSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 238 ~~w~~~~~~~~~~~~~~lA~----ry~~-----~~~v~g~eL~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+.| +++...+ -|+| +..-+.+-+=|+|...+- +.+.+.+|++..-+.....-.+.++-|.
T Consensus 182 P~W----------V~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~ 251 (548)
T PLN02803 182 PPW----------VLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQ 251 (548)
T ss_pred CHH----------HHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 333 1221111 1333 223445666788876543 4477888888877777775545544444
Q ss_pred CCCC
Q 013777 308 NRLG 311 (436)
Q Consensus 308 ~~~~ 311 (436)
-+.|
T Consensus 252 VGlG 255 (548)
T PLN02803 252 VGMG 255 (548)
T ss_pred eccc
Confidence 3343
No 70
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.89 E-value=1.4 Score=48.62 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=80.9
Q ss_pred HHHHHHHHhCCCCEEEe-cCc------cccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-
Q 013777 160 DEDFKFLSSNGINAVRI-PVG------WWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ- 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~------~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q- 225 (436)
++-+..|+++|+|+|=| |+. .|- .++. .+.+- -+..+.|.++|+.|.++||+||||+ |..+...
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~-~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~ 350 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTAR-HGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHG 350 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcc-cCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccc
Confidence 56689999999999987 552 121 1111 11111 1467899999999999999999997 4332110
Q ss_pred -CCC------CCCCCCCC-CCCCC--------hhHHHHHHHHHHHHHHHhCCCC-------ceeEEE--------eecCC
Q 013777 226 -NGN------EHSATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIE--------LINEP 274 (436)
Q Consensus 226 -ng~------~~sg~~~~-~~~w~--------~~~~~~~~~~~~~lA~ry~~~~-------~v~g~e--------L~NEP 274 (436)
..+ .+...+.+ ...|. +..++..++......+.|.=+- .++-.+ +-|+-
T Consensus 351 l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~ 430 (730)
T PRK12568 351 LAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAH 430 (730)
T ss_pred cccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccccccccccc
Confidence 001 11111111 22343 3445555666666666654221 111011 11221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 275 LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
. +.....-..|.+++-.+|++..|+.++|-+
T Consensus 431 g--g~en~ea~~Fl~~ln~~v~~~~P~~~~IAE 461 (730)
T PRK12568 431 G--GRENLEAVAFLRQLNREIASQFPGVLTIAE 461 (730)
T ss_pred C--CccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1 111123467999999999999999988876
No 71
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.61 E-value=0.57 Score=40.31 Aligned_cols=98 Identities=16% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHHHhCCCCEEEecCc---cccccCCC--CCCCCccchHHHHHHHHHHHHHcCCEEEEEc--CCC-------CC--
Q 013777 160 DEDFKFLSSNGINAVRIPVG---WWIANDPT--PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL--HAA-------PG-- 223 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~---~~~~~~~~--~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl--H~~-------pg-- 223 (436)
++-++.+++.|+|+|-|... -+.+.+.. +..|+.. .+.|.++|+.|++.||+|++=+ +.. |.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~ 80 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWF 80 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCcee
Confidence 45578899999999999553 12222211 1223333 5889999999999999999833 211 11
Q ss_pred --CCCCCCCCCCCCCCCCCC-----hhHHHHHHHHHHHHHHHh
Q 013777 224 --SQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARY 259 (436)
Q Consensus 224 --~qng~~~sg~~~~~~~w~-----~~~~~~~~~~~~~lA~ry 259 (436)
..+|....+.....+.|. ..+.+..++.++.+.++|
T Consensus 81 ~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 81 VRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 011111111111222343 456788888999999999
No 72
>PLN02801 beta-amylase
Probab=94.52 E-value=0.39 Score=49.77 Aligned_cols=59 Identities=24% Similarity=0.601 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEEcCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAP 222 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~--VilDlH~~p 222 (436)
+..++.||++|+.-|=++| ||-..+...|..| .+...+++++.+++.||+ ||+..|..-
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCG 100 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQCG 100 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 6889999999999999999 6766665555566 578888999999999997 577889643
No 73
>PLN00197 beta-amylase; Provisional
Probab=94.44 E-value=0.38 Score=50.29 Aligned_cols=59 Identities=19% Similarity=0.480 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEEcCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAP 222 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~--VilDlH~~p 222 (436)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||+ ||+..|..-
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHqCG 190 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQCG 190 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 6889999999999999999 7766666556666 578888999999999997 567888643
No 74
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=94.14 E-value=0.57 Score=40.94 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=64.7
Q ss_pred ccccEEEEecCCCc---eEEEcCCC-CCCcceEEEEE--ecCCeEEEEEe-CCceEEeecCCCCceEEEEecCCC-----
Q 013777 4 KFQKYIAAESGGGT---IVVANRTS-ASGWETFRLWR--VNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAG----- 71 (436)
Q Consensus 4 ~~~~~~~a~~~g~~---~~~anr~~-~~~we~f~~~~--~~~~~~~~~~~-~~~~~~~~~~g~~~~~~a~~~~~~----- 71 (436)
-|||||++-..+.. -|--+-+. ..++-.|++.. ..+|.+.+|.. +++|.-... +++-=|.|.++.|.
T Consensus 13 ~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p~ed~s~ 91 (153)
T PF07468_consen 13 DNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDPDEDQSK 91 (153)
T ss_dssp TTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSHHH-TCS
T ss_pred CCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCcccccCC
Confidence 58999999773222 24344444 45999999999 77999999998 999999744 22336899888775
Q ss_pred CCce-EEEEEcC-CCCcceEEec-cCCceEEE
Q 013777 72 YSET-FQIVRKD-GDSSRVRLSA-SNGMFIQA 100 (436)
Q Consensus 72 ~~e~-f~~~~~~-~~~~~v~i~~-~nG~~lq~ 100 (436)
+..| |+-|+-+ ++...++++- .||.|.+-
T Consensus 92 ~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r 123 (153)
T PF07468_consen 92 PSCTLFEPVKVDVKDFNVIALRNMQNGHFCKR 123 (153)
T ss_dssp TCGG-EEEEESCCCETTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEecCCCccEEEEEecCCceEEEE
Confidence 4777 9988754 3335677766 57888873
No 75
>PLN02705 beta-amylase
Probab=94.02 E-value=0.47 Score=50.10 Aligned_cols=60 Identities=17% Similarity=0.429 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEEcCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPG 223 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~--VilDlH~~pg 223 (436)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||+ |||.+|..-|
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 6889999999999999999 7766666555666 578888999999999998 6778887533
No 76
>PLN02905 beta-amylase
Probab=93.97 E-value=1 Score=47.86 Aligned_cols=134 Identities=16% Similarity=0.358 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEEcCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~--VilDlH~~pg~qng~~~sg~~~~~ 237 (436)
+..++.||++|+.-|=++| ||-..+...|..| .|....++++.+++.||+ |||.+|..-| |..+.+ ...-
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHqCGG--NVGD~~--~IPL 360 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHECGG--NVGDDV--CIPL 360 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC--CCCCcc--cccC
Confidence 6889999999999999999 7766666556666 578888999999999997 5678887543 211111 1122
Q ss_pred CCCChhHHHHHHHHHHHHHH----HhCC-----CCceeEEEeecCCCCCC-CChhHHHHHHHHHHHHHHhhCCC-eEEEE
Q 013777 238 QEWGDSNVADTVAVIDFLAA----RYAN-----RPSLAAIELINEPLAPG-VALDTLKSYYKAGYDAVRKYTST-AYVIM 306 (436)
Q Consensus 238 ~~w~~~~~~~~~~~~~~lA~----ry~~-----~~~v~g~eL~NEP~~~~-~~~~~~~~~~~~~~~aIR~~~p~-~~Viv 306 (436)
+.| +++...+ -|+| ++.-+.+-.=++|...+ .+.+.+.+|++..-+.....-.+ .++=|
T Consensus 361 P~W----------V~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI 430 (702)
T PLN02905 361 PHW----------VAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMV 430 (702)
T ss_pred CHH----------HHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 333 1211111 1333 23445577788886533 45677888888888777775433 44334
Q ss_pred eCCCC
Q 013777 307 SNRLG 311 (436)
Q Consensus 307 ~~~~~ 311 (436)
.-+.|
T Consensus 431 ~VGLG 435 (702)
T PLN02905 431 EVGLG 435 (702)
T ss_pred EeccC
Confidence 33333
No 77
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.95 E-value=2.3 Score=46.36 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCCCEEEe-cCc------cccccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN 226 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~------~~~~~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~qn 226 (436)
+.-+..|+++|+|+|=| |+. .| ..++.. +.+- =+..+.|.++|+.|.++||+||||+ |..+. .+
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~w-GY~~~~~~~~~~~-~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~-~~ 247 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSW-GYQVTGYYAPTSR-LGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTD-ES 247 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCC-CcCcccccccccc-cCCHHHHHHHHHHHHHCCCEEEEEecccccCcc-hh
Confidence 44468899999999987 552 12 111110 1110 1467899999999999999999997 43332 11
Q ss_pred CC---C------CCCCCCC-CCCCC--------hhHHHHHHHHHHHHHHHhCCCC-------ceeEEE------eecCCC
Q 013777 227 GN---E------HSATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIE------LINEPL 275 (436)
Q Consensus 227 g~---~------~sg~~~~-~~~w~--------~~~~~~~~~~~~~lA~ry~~~~-------~v~g~e------L~NEP~ 275 (436)
+. + +.....+ ...|. +..++..++..+...+.|.=+- .++-.+ +-|+..
T Consensus 248 ~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~g 327 (639)
T PRK14706 248 GLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHG 327 (639)
T ss_pred hhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccC
Confidence 11 0 0000001 12333 3445555666666666664321 111011 111111
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 276 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
+.....-..+.+.+-.+||+..|+.++|.+.
T Consensus 328 --g~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~ 358 (639)
T PRK14706 328 --GRENLEAIAFLKRLNEVTHHMAPGCMMIAEE 358 (639)
T ss_pred --CcccHHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1112345678999999999999998777763
No 78
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=93.95 E-value=0.43 Score=38.94 Aligned_cols=78 Identities=13% Similarity=0.288 Sum_probs=53.6
Q ss_pred CCcccccEEEEecCC---CceEEEcCCCCCCcceEEEEEecCCeEEEEEe-CCceEEeecCCC--CceEEEEec-CCCCC
Q 013777 1 MSTKFQKYIAAESGG---GTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQ--GNGLVAVSN-TAGYS 73 (436)
Q Consensus 1 ~s~~~~~~~~a~~~g---~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~~~~~~~g~--~~~~~a~~~-~~~~~ 73 (436)
+++..|+||.+..++ |+.|+.-......-..|+|.+.++++|.|+.. .++.+.+.+++- |..|+--.. .-+..
T Consensus 20 ~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~~~~~~~ 99 (105)
T PF14200_consen 20 RNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQWEYDNGSDN 99 (105)
T ss_dssp EETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEEE-STSSGG
T ss_pred EECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEEeCCCCCcc
Confidence 356789999998874 66776655555899999999999999999998 577887765211 223443332 44555
Q ss_pred ceEEE
Q 013777 74 ETFQI 78 (436)
Q Consensus 74 e~f~~ 78 (436)
..|.|
T Consensus 100 Q~W~l 104 (105)
T PF14200_consen 100 QQWKL 104 (105)
T ss_dssp GEEEE
T ss_pred CEEEe
Confidence 55554
No 79
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=93.91 E-value=0.4 Score=50.14 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=91.5
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 238 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~ 238 (436)
++--++-.++.|+|++|+ |- ++-|. =|.+-+.|.+.||-|.-|+.-+-.- ....
T Consensus 359 ~~~LL~Sv~e~~MN~lRV----WG------GGvYE------sd~FY~lad~lGilVWQD~MFACAl---------YPt~- 412 (867)
T KOG2230|consen 359 TEFLLDSVAEVGMNMLRV----WG------GGVYE------SDYFYQLADSLGILVWQDMMFACAL---------YPTN- 412 (867)
T ss_pred HHHHHHHHHHhCcceEEE----ec------Ccccc------chhHHHHhhhccceehhhhHHHhhc---------ccCc-
Confidence 455567789999999998 41 12332 3556678999999999888743211 0000
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-------------CCChhHHHHHHHHHHHHHH-hhCCCeEE
Q 013777 239 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------------GVALDTLKSYYKAGYDAVR-KYTSTAYV 304 (436)
Q Consensus 239 ~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-------------~~~~~~~~~~~~~~~~aIR-~~~p~~~V 304 (436)
+...+...+-.+.=+.|.+.+|.|+.|---||-... ....+...-+|++.+..+. ..++..+.
T Consensus 413 ---~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPf 489 (867)
T KOG2230|consen 413 ---DEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPF 489 (867)
T ss_pred ---HHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCc
Confidence 233444455566677899999999999999996531 1122345556666444443 44566776
Q ss_pred EEeC-CCCC-CChhhhhccCCCCCcEEEEEeecCcC
Q 013777 305 IMSN-RLGP-ADHKELLSFASGLSRVVIDVHYYNLF 338 (436)
Q Consensus 305 iv~~-~~~~-~~~~~~~~~~~~~~nvv~~~H~Y~~~ 338 (436)
|++. ..|. ..+..+... .+.+|--=|+|+|.-+
T Consensus 490 i~SSPsNG~ete~e~~VS~-NP~dn~~GDVHfYdy~ 524 (867)
T KOG2230|consen 490 IVSSPSNGKETEPENYVSS-NPQDNQNGDVHFYDYT 524 (867)
T ss_pred eecCCCCCcccCccccccC-CCccccCCceEeeehh
Confidence 6663 2221 122333332 4566777799999754
No 80
>PLN00196 alpha-amylase; Provisional
Probab=93.40 E-value=0.26 Score=50.97 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEecCcccccc----CCCCCCCCc---cchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIAN----DPTPPKPFV---GGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~----~~~~~~~~~---~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.+.+..|+++|+++|=||=.+.... ++...-..+ =|..+.|+++|+.|+++||+||+|+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5668999999999999975432110 110000011 1467889999999999999999997
No 81
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.24 E-value=0.39 Score=51.21 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
++-++++++.|+|+|-..|.|- ..+|.++ .|+ ++.++ |.++|..|++.||+|||-+-
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep~~g-~y~FsG~~D-lvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEPSPG-KYDFSGRYD-LVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccCCCC-cccccchhH-HHHHHHHHHHCCeEEEecCC
Confidence 7889999999999999999775 4466554 444 44444 66679999999999999654
No 82
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=93.11 E-value=0.14 Score=51.80 Aligned_cols=127 Identities=19% Similarity=0.439 Sum_probs=70.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEEcCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV--IVDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~V--ilDlH~~pg~qng~~~sg~~~~~ 237 (436)
+..++.||++|+..|=++| ||-..+...|..| .+...+++++.+++.||++ |+..|...|.- |.+ +. ..-
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~cGgNv-gD~-~~--IpL 90 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQCGGNV-GDD-CN--IPL 90 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSST-TSS-SE--B-S
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeecCCCCC-CCc-cC--CcC
Confidence 6889999999999999999 6666666555556 5888999999999999985 66778764421 111 10 111
Q ss_pred CCCChhHHHHHHHHHHHHHH---HhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEE
Q 013777 238 QEWGDSNVADTVAVIDFLAA---RYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 306 (436)
Q Consensus 238 ~~w~~~~~~~~~~~~~~lA~---ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv 306 (436)
+.| +++...+ -|++.....--|-+. |...+.+.+.+.+|++...+..+..- ..+.-|
T Consensus 91 P~W----------v~~~~~~~di~ytd~~G~rn~E~lS-p~~~grt~~~Y~dfm~sF~~~f~~~~-~~I~~I 150 (402)
T PF01373_consen 91 PSW----------VWEIGKKDDIFYTDRSGNRNKEYLS-PVLDGRTLQCYSDFMRSFRDNFSDYL-STITEI 150 (402)
T ss_dssp -HH----------HHHHHHHSGGEEE-TTS-EEEEEE--CTBTTBCHHHHHHHHHHHHHHCHHHH-TGEEEE
T ss_pred CHH----------HHhccccCCcEEECCCCCcCcceee-cccCCchHHHHHHHHHHHHHHHHHHH-hhheEE
Confidence 222 1111111 144444333344444 65444336666777776666666554 444333
No 83
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.06 E-value=1.2 Score=44.06 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=82.6
Q ss_pred HHHHHHHHhCCCCEEEecCccc--cccCCCCCCC---------CccchHHHHHHHHHHHHHcCCEEEEEc----CCCCC-
Q 013777 160 DEDFKFLSSNGINAVRIPVGWW--IANDPTPPKP---------FVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPG- 223 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~--~~~~~~~~~~---------~~~~~l~~ld~~v~~a~~~Gi~VilDl----H~~pg- 223 (436)
++.++.|+++|||+|=+-|-.. .+. +..-.| .....++-|..+|+.|+++||.|.-=+ -..+.
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y-~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~ 100 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALY-PSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVS 100 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEe-cccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchh
Confidence 5778899999999987755321 000 111111 111258899999999999999986322 10000
Q ss_pred ---CCCCC----CCCCCC------CCCCCCC----hhHHHHHHHHHHHHHHHhCCCCceeEEE--ee-------cC----
Q 013777 224 ---SQNGN----EHSATR------DGFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIE--LI-------NE---- 273 (436)
Q Consensus 224 ---~qng~----~~sg~~------~~~~~w~----~~~~~~~~~~~~~lA~ry~~~~~v~g~e--L~-------NE---- 273 (436)
.+.+. .+.+.. .+...|. |+.++..+++++.|+++|. -..|- +| .. ++
T Consensus 101 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lDdy~yp~~~~g~~~~~~~ 178 (311)
T PF02638_consen 101 HILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LDDYFYPPPSFGYDFPDVA 178 (311)
T ss_pred hhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ecccccccccCCCCCccHH
Confidence 00110 011100 0111232 6778888999999999984 22222 22 00 00
Q ss_pred ---------CCCCCCC-------hhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 274 ---------PLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 274 ---------P~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
|.....+ .+.+..+.++++++|+++.|+..+-++.
T Consensus 179 ~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp 229 (311)
T PF02638_consen 179 AYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISP 229 (311)
T ss_pred HHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 1100011 2345678999999999999998887763
No 84
>PLN02361 alpha-amylase
Probab=92.99 E-value=0.34 Score=49.66 Aligned_cols=64 Identities=17% Similarity=0.374 Sum_probs=44.7
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEecCcccccc-CCCCCCC-C--cc--chHHHHHHHHHHHHHcCCEEEEEc
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRIPVGWWIAN-DPTPPKP-F--VG--GSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~-~~~~~~~-~--~~--~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
||..- ++.++.|+++|+++|=||=.+.... ....+.. | ++ +..+.|+++|+.|+++||+||+|+
T Consensus 27 ~w~~i--~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 27 WWRNL--EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHH--HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 56443 5668899999999999976542211 0011111 1 11 468899999999999999999998
No 85
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=92.40 E-value=1.6 Score=43.86 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=77.7
Q ss_pred CHHHHHHHHhCCCCEEEecC----ccccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPV----GWWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 230 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv----~~~~~~~~~~~~~~~----~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~ 230 (436)
+++-++.++++|+..|=|-- +|-++ |....+|. ...-+.+.++++.|+++||++.|-+|...-.......
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW--~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~ 170 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLW--PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPP 170 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS----TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTS
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccC--CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCC
Confidence 35668888999999987733 12111 11112232 2356899999999999999999977764211000000
Q ss_pred CCCC--CC----CCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEE
Q 013777 231 SATR--DG----FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYV 304 (436)
Q Consensus 231 sg~~--~~----~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~V 304 (436)
.... .. ...|.+...+.+..-++.|..+| .+.++-||...... .+.+.. .+.++.||+..|+.+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~~--~~~~~~i~~~qp~~ii 241 (346)
T PF01120_consen 171 DEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWDS--AELYNWIRKLQPDVII 241 (346)
T ss_dssp SCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHHH--HHHHHHHHHHSTTSEE
T ss_pred CccCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccCH--HHHHHHHHHhCCeEEE
Confidence 0000 00 00010112336667888899999 67777799887642 123322 8899999999997655
Q ss_pred E
Q 013777 305 I 305 (436)
Q Consensus 305 i 305 (436)
.
T Consensus 242 ~ 242 (346)
T PF01120_consen 242 N 242 (346)
T ss_dssp E
T ss_pred e
Confidence 3
No 86
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=92.31 E-value=1.1 Score=36.47 Aligned_cols=71 Identities=10% Similarity=0.268 Sum_probs=52.4
Q ss_pred eEEEEEec--CCeEEEEEe-CCceEEeecCC--CCceEEEEecCCCCCceEEEEEcCCCCcceEEecc-CCceEEEeeC
Q 013777 31 TFRLWRVN--ETFYNFRVN-NKQFIGLENQG--QGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISE 103 (436)
Q Consensus 31 ~f~~~~~~--~~~~~~~~~-~~~~~~~~~~g--~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~i~~~-nG~~lq~~~~ 103 (436)
.+++..+. ++.|.|+.. .|+++.+.+.+ .|..|+.-...-.+.+.|.|++.+++ .++|+.. .|+.|.+.+.
T Consensus 4 ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g--~y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 4 QWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDG--YYRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTS--EEEEEETSTTEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCC--eEEEEECCCCcEEEECCC
Confidence 56777766 899999987 89999998632 13356666655689999999998765 3667765 4888887643
No 87
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=92.29 E-value=0.47 Score=44.76 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCC---CceeEEEeecCCCC----------CCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 013777 251 VIDFLAARYANR---PSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 310 (436)
Q Consensus 251 ~~~~lA~ry~~~---~~v~g~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 310 (436)
++..|..+|..- ..|-+|.|=|||.. ..++.+.+..-+-+..++||+.+|+..|+-...|
T Consensus 109 wV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP~~w 181 (239)
T PF12891_consen 109 WVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGPVEW 181 (239)
T ss_dssp HHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred HHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeechhh
Confidence 455566666654 36788999999974 1345567777788888999999999988755433
No 88
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=92.05 E-value=0.47 Score=50.77 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccC--CCCCCCC---c--cchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIAND--PTPPKPF---V--GGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~--~~~~~~~---~--~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.+.++.|+++|+++|=|+=-+..... +.....| + =+.++.|+++|+.|+++||+||||+
T Consensus 30 ~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 30 IEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35588999999999998432221100 0000001 1 1578999999999999999999997
No 89
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.96 E-value=0.47 Score=50.83 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCEEEecCccccc-----cCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIA-----NDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~-----~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
+.++.|+++|+++|=|+=-+..- .++. ..+|- =+..+.|+++|+.|+++||+||||+-
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~-~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPT-YGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcc-cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 55899999999999883222110 0000 00110 14678999999999999999999983
No 90
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.85 E-value=4.2 Score=38.18 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 013777 193 VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 272 (436)
Q Consensus 193 ~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~N 272 (436)
.+..++.+.+++..|++.||++|- |-++.-... .+ .+...+++++-++..+.--......+++|+|.
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQ-LAGYDVYYE--~~----------d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMD 157 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQ-LAGYDVYYE--EA----------DEETRQRFIEGLKWAVELAARAQVMLAVEIMD 157 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEe-eccceeeec--cC----------CHHHHHHHHHHHHHHHHHHHhhccEEEeeecc
Confidence 356899999999999999999873 221110000 00 03667788766665433323335778999999
Q ss_pred CCCC
Q 013777 273 EPLA 276 (436)
Q Consensus 273 EP~~ 276 (436)
-|..
T Consensus 158 tpfm 161 (287)
T COG3623 158 TPFM 161 (287)
T ss_pred cHHH
Confidence 9973
No 91
>PRK03705 glycogen debranching enzyme; Provisional
Probab=91.82 E-value=0.4 Score=52.35 Aligned_cols=57 Identities=26% Similarity=0.564 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCEEEe-cCc---------------cccccCCC---CCCC-Ccc---chHHHHHHHHHHHHHcCCEEEEE
Q 013777 161 EDFKFLSSNGINAVRI-PVG---------------WWIANDPT---PPKP-FVG---GSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRi-pv~---------------~~~~~~~~---~~~~-~~~---~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
.-++.|+++|+|+|=| ||. +| ..++. .+++ |.. ..++.|+++|+.|.++||+||||
T Consensus 183 ~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~yw-GYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 183 VMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYW-GYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred cchHHHHHcCCCEEEecCcccCCCccccccccccccc-CcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 3499999999999988 552 11 01111 1111 211 24678999999999999999999
Q ss_pred c
Q 013777 218 L 218 (436)
Q Consensus 218 l 218 (436)
+
T Consensus 262 v 262 (658)
T PRK03705 262 V 262 (658)
T ss_pred E
Confidence 7
No 92
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=91.80 E-value=0.46 Score=50.01 Aligned_cols=58 Identities=28% Similarity=0.275 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCCEEEecCcccc-------ccCCCCC---C------CCcc--chHHHHHHHHHHHHHcCCEEEEEc
Q 013777 161 EDFKFLSSNGINAVRIPVGWWI-------ANDPTPP---K------PFVG--GSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~-------~~~~~~~---~------~~~~--~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+-++.|+++|+++|=|+=.+.. ..++... . ..++ |..+.|+++|+.|.++||+||+|+
T Consensus 26 ~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 26 ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4489999999999999543321 1111110 0 0111 468899999999999999999998
No 93
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=91.58 E-value=2.9 Score=47.16 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCCC---CC-------C----CCCCCCCCCCC------hhHHHHHHHHH
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNG---NE-------H----SATRDGFQEWG------DSNVADTVAVI 252 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~qng---~~-------~----sg~~~~~~~w~------~~~~~~~~~~~ 252 (436)
....|.++|+.|.++||+||||+ |...++... ++ + .|.......+. +...+..++.+
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998 554432110 00 0 01000001111 33345566777
Q ss_pred HHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 013777 253 DFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 311 (436)
Q Consensus 253 ~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 311 (436)
+..++.|+=+ .+ -||++..-. ..+++++.+++|+.+|+.++ ++.+|.
T Consensus 482 ~~W~~ey~VD-GF-RfDlm~~~~---------~~f~~~~~~~l~~i~pdi~l-~GEgW~ 528 (898)
T TIGR02103 482 VVWAKDYKVD-GF-RFDLMGHHP---------KAQMLAAREAIKALTPEIYF-YGEGWD 528 (898)
T ss_pred HHHHHHcCCC-EE-EEechhhCC---------HHHHHHHHHHHHHhCCCEEE-EecCCC
Confidence 7778777533 22 378886532 24667777889999997654 565664
No 94
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=91.53 E-value=2.1 Score=43.98 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=78.0
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg~ 233 (436)
-+|++.++.|++.|+|.|=| +...+.+..- ... .....+.+.++++.+++.|+. |.+||- +.||
T Consensus 112 ~lt~e~l~~l~~~Gvnrisl--GvQS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg---------- 178 (400)
T PRK07379 112 TFDLEQLQGYRSLGVNRVSL--GVQAFQDELL-ALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH---------- 178 (400)
T ss_pred cCCHHHHHHHHHCCCCEEEE--EcccCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 36899999999999995554 4343322100 000 123567788899999999998 778975 3443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
...+.+.+.++.+.+ . +-+.|-.+.|.-||..+ -.+.+....+|..+.+.+++.+=.+
T Consensus 179 ---------qt~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 247 (400)
T PRK07379 179 ---------QTLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEH 247 (400)
T ss_pred ---------CCHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCce
Confidence 223444445555443 2 23466667888888742 1234566678888888888887655
Q ss_pred E
Q 013777 303 Y 303 (436)
Q Consensus 303 ~ 303 (436)
+
T Consensus 248 y 248 (400)
T PRK07379 248 Y 248 (400)
T ss_pred e
Confidence 4
No 95
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=91.39 E-value=0.59 Score=49.96 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCEEEecCcccccc--CCCCCCCC---cc--chHHHHHHHHHHHHHcCCEEEEEc
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIAN--DPTPPKPF---VG--GSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~~--~~~~~~~~---~~--~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+-++.|+++|+|+|=|+=-+.... .+.....| ++ +..+.|+++|+.|+++||+||||+
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 448999999999999842221100 00000011 11 467999999999999999999997
No 96
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=91.04 E-value=2.8 Score=42.55 Aligned_cols=123 Identities=20% Similarity=0.118 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg~ 233 (436)
.++++.++.|+++|+|.|-|++ ..+.+.. -..+ .....+.+.++++.+++.|+. |.+|+- +.||
T Consensus 105 ~i~~e~l~~l~~~G~~rvslGv--QS~~~~~-L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg---------- 171 (375)
T PRK05628 105 STSPEFFAALRAAGFTRVSLGM--QSAAPHV-LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPG---------- 171 (375)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC----------
Confidence 4789999999999999777665 3222110 0001 112567788899999999998 989975 3443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
.+.+.+.+.++.+.+ ++ -..|..+.|.=||..+ ..+.+.....+..+.+..++.+-.+
T Consensus 172 ---------qt~~~~~~tl~~~~~-l~-~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 240 (375)
T PRK05628 172 ---------ESDDDWRASLDAALE-AG-VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (375)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Confidence 234455555555544 22 2345456677677642 1233556778888888888877554
Q ss_pred E
Q 013777 303 Y 303 (436)
Q Consensus 303 ~ 303 (436)
+
T Consensus 241 y 241 (375)
T PRK05628 241 Y 241 (375)
T ss_pred e
Confidence 3
No 97
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=90.76 E-value=3.4 Score=41.72 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg 232 (436)
..++++.++.|++.|+|.|=|++ ..+.+..- ... .....+.+.++++.++++|+. |-+|+- +.||
T Consensus 99 ~~lt~e~l~~lk~~G~nrisiGv--QS~~d~vL-~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg--------- 166 (353)
T PRK05904 99 ELITQSQINLLKKNKVNRISLGV--QSMNNNIL-KQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI--------- 166 (353)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC---------
Confidence 45789999999999999666655 32221100 000 123567788899999999997 888864 4443
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------CCChhHHHHHHHHHHHHHHhhCCCeEEE
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTSTAYVI 305 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p~~~Vi 305 (436)
.+.+.+.+.++.+.+ .+ -+.|..+.|.=||..+ ..+.+.-.+.++.+.+.+++.+-.++=+
T Consensus 167 ----------qt~e~~~~tl~~~~~-l~-p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 233 (353)
T PRK05904 167 ----------LKLKDLDEVFNFILK-HK-INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEec
Confidence 233455555555543 22 2345556666676531 1344556677888888888887766543
No 98
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=90.71 E-value=2.1 Score=44.41 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEE-EEcC-CCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI-VDLH-AAPGSQNGNEHSATR 234 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vi-lDlH-~~pg~qng~~~sg~~ 234 (436)
.+|++.++.|+++|+|.|-|.+ ..+.+..-..--.....+.+.++++.++++|+.+| +|+- +.|+
T Consensus 138 ~lt~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~----------- 204 (430)
T PRK08208 138 TTTAEKLALLAARGVNRLSIGV--QSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPG----------- 204 (430)
T ss_pred cCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-----------
Confidence 4789999999999999777655 32221100000011256788899999999999854 7864 3343
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-----CChhHHHHHHHHHHHHHHhhCCCe
Q 013777 235 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-----VALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 235 ~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~-----~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
.+.+.+.+.++.+.+ . +-+.|-.+.|.=||..+- .+.+....+|+.+.+...+.+=.+
T Consensus 205 --------qt~e~~~~~l~~~~~-l-~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 205 --------QTHASWMESLDQALV-Y-RPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred --------CCHHHHHHHHHHHHh-C-CCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 233445555555543 2 224555567777776421 133566677888888887776444
No 99
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=90.50 E-value=3.7 Score=41.67 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH~-~pg~qng~~~sg~ 233 (436)
.++++.++.+++.|+|.|-|.| ..+.+..- ... .....+.+.++++.+++.|+. |-+||-. .||
T Consensus 100 ~~~~~~l~~l~~~G~nrislGv--QS~~~~~L-~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg---------- 166 (370)
T PRK06294 100 NLSESYIRALALTGINRISIGV--QTFDDPLL-KLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPT---------- 166 (370)
T ss_pred CCCHHHHHHHHHCCCCEEEEcc--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 4689999999999999666544 33322100 000 112467778899999999996 8888743 333
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
...+.+.+.++.+.+ ++ -+.|-.|.|.=||..+ -.+.+.....|+.+.+.+.+.+-.+
T Consensus 167 ---------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 235 (370)
T PRK06294 167 ---------QSLSDFIVDLHQAIT-LP-ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR 235 (370)
T ss_pred ---------CCHHHHHHHHHHHHc-cC-CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe
Confidence 234455555555554 22 3456668888888742 0234556778888888888877655
Q ss_pred E
Q 013777 303 Y 303 (436)
Q Consensus 303 ~ 303 (436)
+
T Consensus 236 y 236 (370)
T PRK06294 236 Y 236 (370)
T ss_pred e
Confidence 4
No 100
>PRK09505 malS alpha-amylase; Reviewed
Probab=90.08 E-value=0.92 Score=49.71 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCEEEecCccccc-------------------cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEEc
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIA-------------------NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~-------------------~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+-++.|+++|+|+|=|.=.+... ..+......++ +..+.|+++|+.|+++||+||||+
T Consensus 234 ~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 234 EKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44889999999999984222110 00000000111 468999999999999999999997
No 101
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=89.86 E-value=2.9 Score=42.45 Aligned_cols=123 Identities=24% Similarity=0.240 Sum_probs=75.7
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg 232 (436)
..++++.++.|++.|+|.|=|.+ ..+.+.. -... .....+.+.++++.+++.|+. |.+|+- +.||
T Consensus 96 ~~l~~e~l~~l~~~G~~rvsiGv--qS~~~~~-l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg--------- 163 (377)
T PRK08599 96 GDLTKEKLQVLKDSGVNRISLGV--QTFNDEL-LKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG--------- 163 (377)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC---------
Confidence 34789999999999999666655 2221110 0000 123567888999999999997 667774 4443
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-----------CChhHHHHHHHHHHHHHHhhCCC
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-----------VALDTLKSYYKAGYDAVRKYTST 301 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~-----------~~~~~~~~~~~~~~~aIR~~~p~ 301 (436)
.+.+.+.+.++.+.+ .+ -+.|..+.|.-||..+- .+.+.....++.+.+.+++.+=.
T Consensus 164 ----------qt~~~~~~~l~~~~~-l~-~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 164 ----------QTIEDFKESLAKALA-LD-IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred ----------CCHHHHHHHHHHHHc-cC-CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 223444455555443 22 33555677777886420 13345567788888888887754
Q ss_pred e
Q 013777 302 A 302 (436)
Q Consensus 302 ~ 302 (436)
+
T Consensus 232 ~ 232 (377)
T PRK08599 232 Q 232 (377)
T ss_pred E
Confidence 4
No 102
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=89.75 E-value=14 Score=36.41 Aligned_cols=144 Identities=16% Similarity=0.214 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCEEEecCc----cccccC--CCCC--C----CCc-cc--hHHHHHHHHHHHHHcCCEEEEEcCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVG----WWIAND--PTPP--K----PFV-GG--SSKVLDNAFDWAEKYGVKVIVDLHAAPGS 224 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~----~~~~~~--~~~~--~----~~~-~~--~l~~ld~~v~~a~~~Gi~VilDlH~~pg~ 224 (436)
++.++.|+..++|.+-+.+. |-+-.. |.-. + ++. .+ ..+.+.++++.|+++||.||..+-. ||.
T Consensus 19 k~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD~-PGH 97 (303)
T cd02742 19 KRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEIDM-PGH 97 (303)
T ss_pred HHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEeccc-hHH
Confidence 45677889999999998875 321111 1100 0 001 11 4688999999999999999998743 331
Q ss_pred CCC------------CCCCCCC--CCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHH
Q 013777 225 QNG------------NEHSATR--DGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYK 289 (436)
Q Consensus 225 qng------------~~~sg~~--~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~ 289 (436)
... ...+... .+...-. +...+-..++++.+++-|...---+|-| |........+.+..|.+
T Consensus 98 ~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgD---E~~~~~~~~~l~~~f~~ 174 (303)
T cd02742 98 STAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGD---EAHFKQDRKHLMSQFIQ 174 (303)
T ss_pred HHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecce---ecCCCCCHHHHHHHHHH
Confidence 100 0000000 0000111 4556666788888888885432234533 32211123456778889
Q ss_pred HHHHHHHhhCCCeEEEEeC
Q 013777 290 AGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 290 ~~~~aIR~~~p~~~Viv~~ 308 (436)
++.+.|++.+. .+++-++
T Consensus 175 ~~~~~v~~~g~-~~~~W~d 192 (303)
T cd02742 175 RVLDIVKKKGK-KVIVWQD 192 (303)
T ss_pred HHHHHHHHcCC-eEEEecc
Confidence 99999998873 4444443
No 103
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=89.63 E-value=4.6 Score=40.96 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=76.6
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH~-~pg~qng~~~sg 232 (436)
..+|++.++.+++.|+|.|-|.+ ..+.+..- ... .....+.+.++++.+++.|+. |-+|+-. .||
T Consensus 95 ~~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg--------- 162 (374)
T PRK05799 95 GTFTEEKLKILKSMGVNRLSIGL--QAWQNSLL-KYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN--------- 162 (374)
T ss_pred CcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC---------
Confidence 34789999999999999555544 43322100 001 112567788899999999996 6688653 343
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChhHHHHHHHHHHHHHHhhCCC
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTST 301 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~ 301 (436)
.+.+.+.+.++.+.+. + -+.|-.|.|.-+|..+ ..+.+.....|+.+.+.+.+.+=.
T Consensus 163 ----------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 230 (374)
T PRK05799 163 ----------QTLEDWKETLEKVVEL-N-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH 230 (374)
T ss_pred ----------CCHHHHHHHHHHHHhc-C-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 3345566666666542 2 2345556677787642 023455667788888888887755
Q ss_pred eE
Q 013777 302 AY 303 (436)
Q Consensus 302 ~~ 303 (436)
++
T Consensus 231 ~y 232 (374)
T PRK05799 231 QY 232 (374)
T ss_pred EE
Confidence 53
No 104
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=89.52 E-value=1.8 Score=37.60 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=44.8
Q ss_pred cCCeEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEEcCCCCcceEEeccCCceEEEeeC
Q 013777 38 NETFYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISE 103 (436)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~i~~~nG~~lq~~~~ 103 (436)
+...+.||+..++|+.||..|.+-++--++.+...-=+=++|.. +...|++++..|.||.++..
T Consensus 6 d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~--~~~~v~L~saYGrYL~as~~ 69 (142)
T PF04601_consen 6 DGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPG--SPNYVRLRSAYGRYLAASDE 69 (142)
T ss_pred CCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecC--CCCEEEEeeccCceEeccCC
Confidence 46678999999999999976444455555554444334455553 35689999999999987643
No 105
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=89.43 E-value=2.8 Score=43.77 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg 232 (436)
..+|++.++.|+++|+|.|=|.| ..+.+.. -... .....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 148 ~~lt~e~l~~L~~~G~~rvsiGv--QS~~~~v-l~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg--------- 215 (453)
T PRK13347 148 RTVTAEMLQALAALGFNRASFGV--QDFDPQV-QKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH--------- 215 (453)
T ss_pred ccCCHHHHHHHHHcCCCEEEECC--CCCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC---------
Confidence 34789999999999999655544 3222110 0001 123677888999999999996 778864 3443
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC----------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
.+.+.+.+.++.+.+ ++ -..|..+.+...|... -.+.+.....++.+.+.+.+.+=.+
T Consensus 216 ----------qt~e~~~~tl~~~~~-l~-p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 216 ----------QTVESFRETLDKVIA-LS-PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 234556666666654 22 2244445555555421 1134556678888888888877443
No 106
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=89.30 E-value=0.82 Score=53.47 Aligned_cols=64 Identities=23% Similarity=0.458 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCCEEEe-cCccccc--------------cCCC---CCCC-CccchHHHHHHHHHHHHHcCCEEEEEc--
Q 013777 160 DEDFKFLSSNGINAVRI-PVGWWIA--------------NDPT---PPKP-FVGGSSKVLDNAFDWAEKYGVKVIVDL-- 218 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~~~~~--------------~~~~---~~~~-~~~~~l~~ld~~v~~a~~~Gi~VilDl-- 218 (436)
++.++.|+++|+|+|=| ||.-..- .++. .++| |-.+..+.|+++|+.|.++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 46688999999999988 5532110 1110 0111 211267889999999999999999997
Q ss_pred -CCCCC
Q 013777 219 -HAAPG 223 (436)
Q Consensus 219 -H~~pg 223 (436)
|...+
T Consensus 270 NHt~~~ 275 (1221)
T PRK14510 270 NHTGES 275 (1221)
T ss_pred ccccCC
Confidence 55443
No 107
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=89.20 E-value=6.2 Score=33.17 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=65.8
Q ss_pred cccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEe-CCceEEeecCCCCceEEEEecCCCCCceEEEEEcCC
Q 013777 5 FQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDG 83 (436)
Q Consensus 5 ~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~ 83 (436)
+|+||.....| .|.+-++.-+....|.+..++.+.+.||.. .+.|+|.+. .+.|.+. ..+..-..|.-.-..
T Consensus 9 ~~~~L~i~~~g--~V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~---~G~ly~~-~~~~~~C~F~e~~~~- 81 (122)
T PF00167_consen 9 TGYFLQINPNG--TVDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNK---CGRLYGS-KNFNKDCVFREELLE- 81 (122)
T ss_dssp TSEEEEEETTS--BEEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBT---TSBEEEE-SSBTGGGEEEEEEET-
T ss_pred CCeEEEECCCC--eEeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECC---CCeEccc-cccCCCceEEEEEcc-
Confidence 48999887755 778888888899999999999999999998 899999997 3457775 556667777743333
Q ss_pred CCcceEEecc--CCceEEEe
Q 013777 84 DSSRVRLSAS--NGMFIQAI 101 (436)
Q Consensus 84 ~~~~v~i~~~--nG~~lq~~ 101 (436)
+...+-.... .+.||-.+
T Consensus 82 n~y~~~~s~~~~~~~yla~~ 101 (122)
T PF00167_consen 82 NGYNTYESAKYGRGWYLAFN 101 (122)
T ss_dssp TSEEEEEESTTGTTEBCEBC
T ss_pred CCEEEEEeccCCccEEEEEC
Confidence 2334444443 47777554
No 108
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=89.12 E-value=3.9 Score=42.65 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcC-CEEEEEcC-CCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDLH-AAPGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~G-i~VilDlH-~~pg~qng~~~sg~ 233 (436)
.++++.++.+++.|+|.|-|.| ..+.+..- ... .....+.+.++++.++++| +.|.+||- +.||
T Consensus 160 ~~t~e~l~~l~~aGvnRiSiGV--QSf~d~vL-k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg---------- 226 (449)
T PRK09058 160 GFDDEKADAALDAGANRFSIGV--QSFNTQVR-RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPG---------- 226 (449)
T ss_pred cCCHHHHHHHHHcCCCEEEecC--CcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC----------
Confidence 3689999999999999666654 33321100 000 1124567778899999999 78999985 3443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CC-ChhHHHHHHHHHHHHHHhhCCC
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GV-ALDTLKSYYKAGYDAVRKYTST 301 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~-~~~~~~~~~~~~~~aIR~~~p~ 301 (436)
...+.+.+-++.+.+ ++ -..|..|.|.-||..+ .. +.+....+|+.+.+.+++.+=.
T Consensus 227 ---------qT~e~~~~~l~~~~~-l~-~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 227 ---------QTPEIWQQDLAIVRD-LG-LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 223444444555444 22 2456667888888642 11 4466778899999999888765
Q ss_pred eE
Q 013777 302 AY 303 (436)
Q Consensus 302 ~~ 303 (436)
++
T Consensus 296 ~y 297 (449)
T PRK09058 296 QL 297 (449)
T ss_pred EE
Confidence 53
No 109
>PLN02784 alpha-amylase
Probab=88.95 E-value=1.2 Score=49.43 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCEEEecCcccccc-CCCCCCC-C--c--cchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIAN-DPTPPKP-F--V--GGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~-~~~~~~~-~--~--~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.+.++.|+++|+++|=||=.+.... ....+.. | + =+..+.|..+|+.|+++||+||+|+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5679999999999999976432110 0011111 1 1 1467899999999999999999997
No 110
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=88.90 E-value=5.7 Score=41.02 Aligned_cols=123 Identities=21% Similarity=0.188 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSATR 234 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg~~ 234 (436)
.++.+-|+.+++.|+| ||.++-+.+.+..--.--.....+....+++.+++.|+. |-+||- +.|+
T Consensus 134 ~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~----------- 200 (416)
T COG0635 134 TVEAEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPG----------- 200 (416)
T ss_pred CCCHHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-----------
Confidence 4678999999999999 998887655322100000012456677889999999885 888985 3332
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC----------CChhHHHHHHHHHHHHHHhhCCCe
Q 013777 235 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG----------VALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 235 ~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~----------~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
.+.+.+.+.++.+.+ + +-+.|..|.|.-||...- .+.+.....++.+.+.+.+.+=.+
T Consensus 201 --------QT~~~~~~~l~~a~~-l-~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~ 268 (416)
T COG0635 201 --------QTLESLKEDLEQALE-L-GPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQ 268 (416)
T ss_pred --------CCHHHHHHHHHHHHh-C-CCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcE
Confidence 334555555655554 2 245777899999998621 233456678888888888877643
No 111
>PRK05660 HemN family oxidoreductase; Provisional
Probab=88.80 E-value=4.8 Score=40.98 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=76.0
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEE-EEEcCC-CCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKV-IVDLHA-APGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~V-ilDlH~-~pg~qng~~~sg 232 (436)
..++++.++.|+++|+| ||-++-..+.+..- ... .....+.+.++++.+++.|+.. -+|+-- .||
T Consensus 103 ~~l~~e~l~~Lk~~Gv~--risiGvqS~~~~~L-~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg--------- 170 (378)
T PRK05660 103 GTVEADRFVGYQRAGVN--RISIGVQSFSEEKL-KRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD--------- 170 (378)
T ss_pred CcCCHHHHHHHHHcCCC--EEEeccCcCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC---------
Confidence 34789999999999999 45444443321100 000 1235777888999999999974 588753 232
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------C-CChhHHHHHHHHHHHHHHhhCCCeE
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------G-VALDTLKSYYKAGYDAVRKYTSTAY 303 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~------~-~~~~~~~~~~~~~~~aIR~~~p~~~ 303 (436)
.+.+.+.+.++.+.+ . +-+.|..+.|.=||..+ . .+.+.....|+.+.+...+.+=.++
T Consensus 171 ----------qt~~~~~~~l~~~~~-l-~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 236 (378)
T PRK05660 171 ----------QSLEEALDDLRQAIA-L-NPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY 236 (378)
T ss_pred ----------CCHHHHHHHHHHHHh-c-CCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 234556666666555 2 23455556677677531 1 1234556788888888888775554
No 112
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=88.73 E-value=5.7 Score=40.09 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=73.7
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH~-~pg~qng~~~sg 232 (436)
..+|++.++.|+++|+|.|-|.+ ..+.+..- ... .....+.+.++++.+++.|+. |-+|+-. .|+
T Consensus 96 ~~lt~e~l~~l~~~Gv~risiGv--qS~~~~~l-~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg--------- 163 (360)
T TIGR00539 96 ELITAEWCKGLKGAGINRLSLGV--QSFRDDKL-LFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL--------- 163 (360)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCChHHH-HHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC---------
Confidence 34789999999999999666544 32221100 001 123578888999999999995 7788754 333
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-------CChhHHHHHHHHHHHHHHhhCCC
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-------VALDTLKSYYKAGYDAVRKYTST 301 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~-------~~~~~~~~~~~~~~~aIR~~~p~ 301 (436)
.+.+.+.+.++.+.+ .+ -+.+..+.+.=||..+- .+.+....++..+.+.+++.+=.
T Consensus 164 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 227 (360)
T TIGR00539 164 ----------QTLNSLKEELKLAKE-LP-INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFK 227 (360)
T ss_pred ----------CCHHHHHHHHHHHHc-cC-CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 234455555555554 22 23454566666665321 13345666777777777776543
No 113
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=87.77 E-value=3.8 Score=42.77 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=74.7
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCC-EEEEEcCC-CCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLHA-APGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi-~VilDlH~-~pg~qng~~~sg~ 233 (436)
.+|++.++.|++.|+|.|-|.+ ..+.+.. -..+ .....+.+.++++.+++.|+ .|.+|+-. .||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGv--qS~~~~~-L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGV--QDFDPEV-QKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK---------- 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECC--CCCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC----------
Confidence 4789999999999999777766 2221110 0000 12356778889999999999 78888753 343
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC----------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
.+.+.+.+.++.+.+ . +-..|-.+.|...|... -.+.+....++..+.+...+.+=.+
T Consensus 215 ---------qt~e~~~~~l~~~~~-l-~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 215 ---------QTPESFARTLEKVLE-L-RPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 234455555555554 1 22344445555555420 1244566778888888888776443
No 114
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=87.76 E-value=1.3 Score=47.78 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=41.6
Q ss_pred CHHHHHHHHhCCCCEEEe-cCcccc-----ccCCC----CCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 159 TDEDFKFLSSNGINAVRI-PVGWWI-----ANDPT----PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRi-pv~~~~-----~~~~~----~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+++-+..|+++|+++|=| ||.-.. ..++. +...| +.-+-|.++|+.|.++||.||||.
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sry--GtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRY--GTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccC--CCHHHHHHHHHHHHHcCCEEEEEe
Confidence 467788999999999997 553111 11111 11122 467889999999999999999997
No 115
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=87.61 E-value=0.83 Score=49.37 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=41.5
Q ss_pred CCHHHHHHHHhCCCCEEEe-cCccc-cc-----cCC----CCCCCCc----cchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 158 ITDEDFKFLSSNGINAVRI-PVGWW-IA-----NDP----TPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRi-pv~~~-~~-----~~~----~~~~~~~----~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+||+++..||.+|+|+|-| |+.-. .. ..+ .|...|. ......++.+|+.|.+.||-|+||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4688899999999999988 43211 00 000 0001111 2347789999999999999999998
No 116
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=87.38 E-value=5.5 Score=40.55 Aligned_cols=122 Identities=20% Similarity=0.109 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATR 234 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~VilDlH~-~pg~qng~~~sg~~ 234 (436)
.++++.++.|++.|+|.|-| +-..+.+..- ... .....+.+.++++++++.++.|.+||-- .||
T Consensus 101 ~i~~e~L~~l~~~Gvnrisl--GvQS~~d~vL-~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg----------- 166 (380)
T PRK09057 101 SVEAGRFRGYRAAGVNRVSL--GVQALNDADL-RFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPG----------- 166 (380)
T ss_pred cCCHHHHHHHHHcCCCEEEE--ecccCCHHHH-HHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCC-----------
Confidence 47889999999999995555 4343322110 000 1124566778889999999999999853 343
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 235 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 235 ~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
...+.+.+-++.+.+ + +-+.|..+.|.=||..+ -.+.+.....++.+.+.+.+.+-.+
T Consensus 167 --------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ 235 (380)
T PRK09057 167 --------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPA 235 (380)
T ss_pred --------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 223344444555553 3 33466668888888631 1233555677888888887766433
No 117
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=87.25 E-value=7.2 Score=39.25 Aligned_cols=124 Identities=19% Similarity=0.112 Sum_probs=74.0
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH~-~pg~qng~~~sg 232 (436)
.-+|++.++.+++.|+|.|-|.| ..+.+..- ... .....+.+.++++.+++.|+. |-+|+-- .||
T Consensus 94 ~~~~~e~l~~l~~~GvnRiSiGv--QS~~~~~L-~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg--------- 161 (350)
T PRK08446 94 NSATKAWLKGMKNLGVNRISFGV--QSFNEDKL-KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL--------- 161 (350)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC---------
Confidence 34789999999999999655544 33322110 001 123577888899999999996 6688853 243
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC----hhHHHHHHHHHHHHHHhhCCCeE
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA----LDTLKSYYKAGYDAVRKYTSTAY 303 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~----~~~~~~~~~~~~~aIR~~~p~~~ 303 (436)
.+.+.+.+.++.+.+ .+ -+.|..+.|.=||..+-.. ...-...+..+.+.+++.+-.++
T Consensus 162 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~y 224 (350)
T PRK08446 162 ----------DNKKLLKEELKLAKE-LP-INHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQY 224 (350)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEE
Confidence 234455555655554 22 2355557777777642100 00113467777888888765543
No 118
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=87.15 E-value=1.5 Score=45.96 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCCEEEe-cCccc-cccCCCCCCCC-----ccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 161 EDFKFLSSNGINAVRI-PVGWW-IANDPTPPKPF-----VGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRi-pv~~~-~~~~~~~~~~~-----~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
+-++.|+++|+++|=| |+... ....+.....| .-+.++.++++++.|.++||+||+|+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 5689999999999977 33221 01111100011 126899999999999999999999993
No 119
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=87.10 E-value=7.8 Score=38.17 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=73.3
Q ss_pred hcCCHHHHHHHH---hCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEEcC-CCCCCCCCCCC
Q 013777 156 SYITDEDFKFLS---SNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEH 230 (436)
Q Consensus 156 ~~ite~d~~~ia---~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~VilDlH-~~pg~qng~~~ 230 (436)
..++++.++.|+ +.|++ +||-++...+.+..- ... .....+.+.++++.++++||.|.+++- +.||
T Consensus 119 d~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~L-~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg------- 189 (302)
T TIGR01212 119 DCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKTL-KKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG------- 189 (302)
T ss_pred CcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHHH-HHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC-------
Confidence 456677666665 45885 445444443321100 001 112567788899999999999877654 2332
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC--------CCChhHHHHHHHHHHHHHHhhCCCe
Q 013777 231 SATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP--------GVALDTLKSYYKAGYDAVRKYTSTA 302 (436)
Q Consensus 231 sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~--------~~~~~~~~~~~~~~~~aIR~~~p~~ 302 (436)
...+.+.+.++.+.+ ++ -..|-.+-|.-+|..+ ......+..++..+...++...|+.
T Consensus 190 ------------et~e~~~~t~~~l~~-l~-~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~ 255 (302)
T TIGR01212 190 ------------EDREEMMETAKIVSL-LD-VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEV 255 (302)
T ss_pred ------------CCHHHHHHHHHHHHh-cC-CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCe
Confidence 233555566665554 22 2234446677777642 1223346778888889999888866
Q ss_pred EE
Q 013777 303 YV 304 (436)
Q Consensus 303 ~V 304 (436)
.|
T Consensus 256 ~i 257 (302)
T TIGR01212 256 VI 257 (302)
T ss_pred EE
Confidence 44
No 120
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=86.96 E-value=37 Score=34.39 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=111.9
Q ss_pred hCCCCEEEecCccccccCC-----CCCCCC-------ccchHHHHHHHHHHHHH---cCCEEEEEcCCCCCCCCCCCCCC
Q 013777 168 SNGINAVRIPVGWWIANDP-----TPPKPF-------VGGSSKVLDNAFDWAEK---YGVKVIVDLHAAPGSQNGNEHSA 232 (436)
Q Consensus 168 ~~G~N~VRipv~~~~~~~~-----~~~~~~-------~~~~l~~ld~~v~~a~~---~Gi~VilDlH~~pg~qng~~~sg 232 (436)
-+|+|..|+|+.-=.+... +.++.| ..+.++.---.++.|.+ .+|+..-....+||.-. .+|
T Consensus 135 Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsPWsaPgWlK---ttg 211 (518)
T KOG2566|consen 135 GLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASPWSAPGWLK---TTG 211 (518)
T ss_pred CccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecCCCCCceee---ecc
Confidence 4678899999952112110 011111 11222222234455544 45777777777776311 111
Q ss_pred CCCCCCCCC----hhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCCC----------CChhHHHHHHHHHH-HHHH
Q 013777 233 TRDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG----------VALDTLKSYYKAGY-DAVR 296 (436)
Q Consensus 233 ~~~~~~~w~----~~~~~~~~~~~~~lA~ry~~~~-~v~g~eL~NEP~~~~----------~~~~~~~~~~~~~~-~aIR 296 (436)
...|...-. +.+-+.+.++.-.+.+.|..+. ..+|...-|||.... .+.+.-+.|.++-. .++.
T Consensus 212 ~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa 291 (518)
T KOG2566|consen 212 RMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALA 291 (518)
T ss_pred cccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhh
Confidence 111111100 2444555555555566676665 568888999998631 34566667766554 3444
Q ss_pred hh--CCCeEEEE-eCCCCCCChhhhhccC----C-CCCcEEEEEeecCcCCCCCCCCChhhhHHHHHHhhhhhHHHhhhc
Q 013777 297 KY--TSTAYVIM-SNRLGPADHKELLSFA----S-GLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTS 368 (436)
Q Consensus 297 ~~--~p~~~Viv-~~~~~~~~~~~~~~~~----~-~~~nvv~~~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 368 (436)
+. ..+..|+| .+.=+ ....|.+.. . ..----+.+|.|..|... ..+++... .
T Consensus 292 ~s~~~knvkllilDD~Rg--~LP~WadtvlnDpeAakYv~GIaVHwY~df~~p------a~~L~eTh------------~ 351 (518)
T KOG2566|consen 292 SSKTTKNVKLLILDDQRG--LLPHWADTVLNDPEAAKYVHGIAVHWYQDFLEP------AKHLDETH------------R 351 (518)
T ss_pred cCCcCCceEEEEecCCcc--CCCccchhhccChhhhhhccceEEEeeccccCh------hhhhhhHH------------h
Confidence 33 23444444 43111 111221110 0 011123799999876431 11222111 1
Q ss_pred CCCe--EEeecccccC---C-CCCcCHHHHHHHHHHHHHHHccCCCcEEEEceecC
Q 013777 369 NGPL--TFVGEWTCEW---N-VKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 418 (436)
Q Consensus 369 ~~p~--v~vGEwg~~~---~-~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~~k~~ 418 (436)
+.|- +|-.|=++.. + +.-.+.+...+|..+.++-+...-.||+=|.+--+
T Consensus 352 ~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~vtGWtdwNl~Ld 407 (518)
T KOG2566|consen 352 KHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNHVTGWTDWNLILD 407 (518)
T ss_pred hCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhhccceeeeeeEec
Confidence 2232 4455554322 1 22234455677888877777767779999987643
No 121
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=86.85 E-value=2.1 Score=47.64 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCEEEecCcccc------ccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWI------ANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~------~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.+.+..|+++|+++|=|.=-+.. ..+.......++ +..+.|+++++.|+++||+||+|+-
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 57799999999999977321210 001111111111 4689999999999999999999973
No 122
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.95 E-value=30 Score=34.06 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCEEEecCccc-cc-cCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCC----CC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWW-IA-NDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN----EH 230 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~-~~-~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~----~~ 230 (436)
.+.++.|+..|+|.+=|-+.-- .+ ..|.- .+.| .-+.+.++++.|+++||.||..+-. ||..... ..
T Consensus 20 k~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~y---T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~~~~ 95 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAY---TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKHPEF 95 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCc---CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhCccc
Confidence 5668889999999998866320 00 01110 1222 5688999999999999999998754 3321000 00
Q ss_pred CCCCC-C---CCCC-C-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC-CC-------CCChhHHHHHHHHHHHHHH
Q 013777 231 SATRD-G---FQEW-G-DSNVADTVAVIDFLAARYANRPSLAAIELINEPL-AP-------GVALDTLKSYYKAGYDAVR 296 (436)
Q Consensus 231 sg~~~-~---~~~w-~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~-~~-------~~~~~~~~~~~~~~~~aIR 296 (436)
...++ . ...- . +...+-..++++.++.-|...---+|-|=..+.. .. ....+.+..+..++.+.|+
T Consensus 96 ~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~ 175 (301)
T cd06565 96 RHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIK 175 (301)
T ss_pred ccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00000 0 0000 1 4555666678888888887322224433222211 10 1123467889999999999
Q ss_pred hhCCCeEEEEeC
Q 013777 297 KYTSTAYVIMSN 308 (436)
Q Consensus 297 ~~~p~~~Viv~~ 308 (436)
+.++ .+++-++
T Consensus 176 ~~g~-~~~~W~D 186 (301)
T cd06565 176 KRGP-KPMMWDD 186 (301)
T ss_pred HcCC-EEEEEhH
Confidence 9987 4455444
No 123
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.88 E-value=19 Score=35.77 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCCEEEecCcc-ccccCCCCCC--------------------CCc-cc--hHHHHHHHHHHHHHcCCEEE
Q 013777 160 DEDFKFLSSNGINAVRIPVGW-WIANDPTPPK--------------------PFV-GG--SSKVLDNAFDWAEKYGVKVI 215 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~-~~~~~~~~~~--------------------~~~-~~--~l~~ld~~v~~a~~~Gi~Vi 215 (436)
.+-++.|+..++|.+-+.+.- |.+.-+..|. ... .+ ..+.+.++++.|+++||.||
T Consensus 20 k~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI~vI 99 (326)
T cd06564 20 KDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRGVNII 99 (326)
T ss_pred HHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcCCeEe
Confidence 466778899999999987642 1111110000 000 11 56889999999999999999
Q ss_pred EEcCCCCCCCCCC-------CC----CCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCC-CCce-eEEEeecCCCCCCCCh
Q 013777 216 VDLHAAPGSQNGN-------EH----SATRDGFQEWG-DSNVADTVAVIDFLAARYAN-RPSL-AAIELINEPLAPGVAL 281 (436)
Q Consensus 216 lDlH~~pg~qng~-------~~----sg~~~~~~~w~-~~~~~~~~~~~~~lA~ry~~-~~~v-~g~eL~NEP~~~~~~~ 281 (436)
..+-. ||....+ .. +....+..... +...+-..++++.+++-|.. .+.+ +|-| |-.......
T Consensus 100 PEID~-PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgD---E~~~~~~~~ 175 (326)
T cd06564 100 PEIDS-PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGAD---EYAGDAGYA 175 (326)
T ss_pred ccCCC-cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEeccc---cccccCccH
Confidence 97743 3321000 00 00000111111 44555566788888888873 3332 4432 222112345
Q ss_pred hHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 282 DTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 282 ~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
+.+..|.+++.+.|++.+. .+++-.+
T Consensus 176 ~~~~~f~~~~~~~v~~~gk-~~~~W~d 201 (326)
T cd06564 176 EAFRAYVNDLAKYVKDKGK-TPRVWGD 201 (326)
T ss_pred HHHHHHHHHHHHHHHHcCC-eEEEeCC
Confidence 7788999999999999854 3444443
No 124
>PLN03244 alpha-amylase; Provisional
Probab=85.79 E-value=14 Score=40.98 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC----------CCCCCCCCCCCCCCCC--------hhHHHHHHHHHH
Q 013777 195 GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ----------NGNEHSATRDGFQEWG--------DSNVADTVAVID 253 (436)
Q Consensus 195 ~~l~~ld~~v~~a~~~Gi~VilDl---H~~pg~q----------ng~~~sg~~~~~~~w~--------~~~~~~~~~~~~ 253 (436)
+..+.|.++|+.|.++||.||||+ |..+... ..+.+.+.+.....|. +..++..++.++
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHH
Confidence 357889999999999999999996 3333211 0122222111123454 344455556666
Q ss_pred HHHHHhCCC-------CceeEEE--e--ecCCCC----CCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 254 FLAARYANR-------PSLAAIE--L--INEPLA----PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 254 ~lA~ry~~~-------~~v~g~e--L--~NEP~~----~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
...+.|.=+ ++++-.+ + .+.+.. ...+ ..-..|++.+-..|++..|+.+.|.++
T Consensus 518 yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d-~dAv~fL~laN~~ih~~~P~~itIAED 586 (872)
T PLN03244 518 WWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVD-KDALMYLILANEILHALHPKIITIAED 586 (872)
T ss_pred HHHHHhCcCcceeecchhheeeccccccccCCccccccccCC-chHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 666665432 1112111 1 011110 0112 345568888889999999998777763
No 125
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=85.72 E-value=9 Score=39.22 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=78.0
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATRD 235 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~-~pg~qng~~~sg~~~ 235 (436)
.++++.++.|+++|+| ||-++-..+.+..-..--.....+...++++.|++.+..|.+||-- .||
T Consensus 108 ~~~~e~l~~l~~~Gvn--RiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg------------ 173 (390)
T PRK06582 108 SFETEKFKAFKLAGIN--RVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG------------ 173 (390)
T ss_pred cCCHHHHHHHHHCCCC--EEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC------------
Confidence 4789999999999998 5555444332210000001124566677788888888889999863 332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChhHHHHHHHHHHHHHHhhCCCeE
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTAY 303 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~~ 303 (436)
...+.+.+-++.+++ + +-+.|-.+.|.=||..+ ..+.+.....|+.+.+.+++.+=.++
T Consensus 174 -------qt~e~~~~~l~~~~~-l-~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 243 (390)
T PRK06582 174 -------QTLKDWQEELKQAMQ-L-ATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRY 243 (390)
T ss_pred -------CCHHHHHHHHHHHHh-c-CCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcee
Confidence 233445555555554 2 33567778888888642 12345667788888888888876554
No 126
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=85.69 E-value=40 Score=33.63 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCCCEEEecCcc---ccccCCCCC-----CCC------ccc--hHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPF------VGG--SSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~---~~~~~~~~~-----~~~------~~~--~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
.+.++.|+..++|.+-+.+.- |.+.-+.-| +.+ ..+ ..+.+.++|+.|+++||.||..+-. ||
T Consensus 21 k~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD~-PG 99 (329)
T cd06568 21 KRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEIDM-PG 99 (329)
T ss_pred HHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecCC-cH
Confidence 456778899999999887741 212111100 000 011 4678999999999999999998743 23
Q ss_pred CCC------C-CCCCCCC----------CCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHH
Q 013777 224 SQN------G-NEHSATR----------DGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLK 285 (436)
Q Consensus 224 ~qn------g-~~~sg~~----------~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~ 285 (436)
... + ..+.+.. .+..... +...+-..++++.+++-|.+.---+|- -|... ...+.+.
T Consensus 100 H~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiGg---DE~~~--~~~~~~~ 174 (329)
T cd06568 100 HTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHIGG---DEAHS--TPHDDYA 174 (329)
T ss_pred HHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEec---ccCCC--CchHHHH
Confidence 110 0 0000000 0000111 344555567778888777543222442 34432 2456788
Q ss_pred HHHHHHHHHHHhhCC
Q 013777 286 SYYKAGYDAVRKYTS 300 (436)
Q Consensus 286 ~~~~~~~~aIR~~~p 300 (436)
.|.+++.+.|++.+.
T Consensus 175 ~f~~~~~~~v~~~Gk 189 (329)
T cd06568 175 YFVNRVRAIVAKYGK 189 (329)
T ss_pred HHHHHHHHHHHHCCC
Confidence 899999999998764
No 127
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=84.57 E-value=21 Score=35.89 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCEEEecCcc---ccccCCCCC-----CCCcc-c--hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPFVG-G--SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGN 228 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~---~~~~~~~~~-----~~~~~-~--~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~ 228 (436)
.+.++.|+..++|.+-+.+.- |.+.-+.-| +.+.. + ..+.+..+|+.|+++||.||..+- .||.....
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID-~PGH~~a~ 99 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID-TPGHTGSW 99 (348)
T ss_pred HHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc-CchhhHHH
Confidence 456778899999999887631 222111111 11111 1 578899999999999999999874 24421110
Q ss_pred ------------C----CCCCCCCCCC-CC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC------------
Q 013777 229 ------------E----HSATRDGFQE-WG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG------------ 278 (436)
Q Consensus 229 ------------~----~sg~~~~~~~-w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~------------ 278 (436)
. .+........ -. +...+-..++++.+++-|...---+|-|=.+......
T Consensus 100 ~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~~~~w~~~p~~~~~m~~~g 179 (348)
T cd06562 100 GQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVNFNCWNSNPEIQKFMKKNN 179 (348)
T ss_pred HHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCCCCcccCCHHHHHHHHHcC
Confidence 0 0000000000 00 3445555678888888886432234544333221110
Q ss_pred -CC-hhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 279 -VA-LDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 279 -~~-~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
.+ .+.+..|.+++.+.|++.+. .+++-+
T Consensus 180 ~~~~~~l~~~f~~~~~~~l~~~Gk-~~i~W~ 209 (348)
T cd06562 180 GTDYSDLESYFIQRALDIVRSLGK-TPIVWE 209 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC-eEEEee
Confidence 01 12334578888899998874 344444
No 128
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=84.12 E-value=3.5 Score=46.29 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEecCcccc------ccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWI------ANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~------~~~~~~---~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.+.+..|+++|+++|=|+=-+.. ..+... .+|-. +..+.|+++++.|+++||+||+|+-
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-Gt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-GGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEec
Confidence 57789999999999988332211 001111 11111 4678999999999999999999983
No 129
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=83.09 E-value=12 Score=39.51 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCC-EEEEEcCC-CCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLHA-APGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi-~VilDlH~-~pg~qng~~~sg~ 233 (436)
.+|++.++.|++.|+| ||-++...+.+..- ... .....+.+.++++.|+++|+ .|-+|+-. .||
T Consensus 266 ~it~e~L~~Lk~~Gv~--RISIGvQS~~d~vL-k~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg---------- 332 (488)
T PRK08207 266 TITEEKLEVLKKYGVD--RISINPQTMNDETL-KAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG---------- 332 (488)
T ss_pred CCCHHHHHHHHhcCCC--eEEEcCCcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC----------
Confidence 5789999999999999 55454443321100 000 12367888899999999999 77788753 333
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC---------CCChhHHHHHHHHHHHHHHhhCCCeE
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP---------GVALDTLKSYYKAGYDAVRKYTSTAY 303 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~ 303 (436)
.+.+.+.+.++.+.+ .+ -+.|-.+.|.=+|..+ -.+.+.....++.+.+..++.+-.++
T Consensus 333 ---------Et~ed~~~tl~~l~~-L~-pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 333 ---------EGLEEVKHTLEEIEK-LN-PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhh
Confidence 234455555555543 22 2233334444444321 12345667788888888888775554
No 130
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=81.24 E-value=3.4 Score=40.88 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.+-++.+++.||.-|=..+. .+++..+..+.+++++++.|.+.||+||+|.-
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl~--------~~~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSLL--------IPEEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred HHHHHHHHHcCccceeeecc--------cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 35577788899986654332 22344456899999999999999999999986
No 131
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.27 E-value=69 Score=32.27 Aligned_cols=147 Identities=11% Similarity=0.086 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCCEEEecCcc---ccccCCCCC-----CCCc-----------------cc--hHHHHHHHHHHHHHcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPFV-----------------GG--SSKVLDNAFDWAEKYGV 212 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~---~~~~~~~~~-----~~~~-----------------~~--~l~~ld~~v~~a~~~Gi 212 (436)
.+.++.|+..++|.+-+.+.- |.+.-+.-| +.+. .+ ..+.+.++++.|+++||
T Consensus 21 k~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI 100 (357)
T cd06563 21 KRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAAERGI 100 (357)
T ss_pred HHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHHHcCC
Confidence 456778899999999987731 111111100 0000 11 47889999999999999
Q ss_pred EEEEEcCCCCCCCC------C-CCCCCCC----------CCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCC
Q 013777 213 KVIVDLHAAPGSQN------G-NEHSATR----------DGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEP 274 (436)
Q Consensus 213 ~VilDlH~~pg~qn------g-~~~sg~~----------~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP 274 (436)
.||..+-. ||... + ..+.+.. .+...-. +...+-..++++.+++-|...---+|-|=.+.-
T Consensus 101 ~VIPEID~-PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgDE~~~~ 179 (357)
T cd06563 101 TVIPEIDM-PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGDEVPKG 179 (357)
T ss_pred EEEEecCC-chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEeccccCCc
Confidence 99998743 33210 0 0000000 0000001 345555667888888888643333554333221
Q ss_pred CCCC-------------CCh-hHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 275 LAPG-------------VAL-DTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 275 ~~~~-------------~~~-~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.... .+. +.+..|.+++.+.|++.+. .+++-++
T Consensus 180 ~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~-~~i~W~d 226 (357)
T cd06563 180 QWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGK-KMIGWDE 226 (357)
T ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCC-EEEEeec
Confidence 1100 022 2345678899999998763 4444443
No 132
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=79.97 E-value=8.4 Score=40.23 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 233 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~-VilDlH-~~pg~qng~~~sg~ 233 (436)
.++++.++.|+++|+|.|-|.+ ..+.+..- ..+. ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 148 ~l~~e~l~~lk~~G~~risiGv--qS~~~~~l-~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (455)
T TIGR00538 148 YITKDVIDALRDEGFNRLSFGV--QDFNKEVQ-QAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK---------- 214 (455)
T ss_pred cCCHHHHHHHHHcCCCEEEEcC--CCCCHHHH-HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC----------
Confidence 4689999999999999666654 32211100 0010 13567788899999999996 668875 3343
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC----------CCCChhHHHHHHHHHHHHHHhhCC
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTS 300 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p 300 (436)
.+.+.+.+.++.+.+ ++ -..|..+.|.=+|.. .-.+.+...+.++.+.+..++.+-
T Consensus 215 ---------qt~e~~~~tl~~~~~-l~-~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy 280 (455)
T TIGR00538 215 ---------QTKESFAKTLEKVAE-LN-PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY 280 (455)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 234455555555554 22 123433444223321 012356667788888888877664
No 133
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=79.94 E-value=18 Score=37.02 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=72.5
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSAT 233 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~VilDlH~-~pg~qng~~~sg~ 233 (436)
..++++.++.++++|+|-|=|.| ..+.+..- ... .....+.+.++++++++.+..|-+||-. .||
T Consensus 118 ~~~~~e~L~~l~~~GvnrisiGv--QS~~~~~L-~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg---------- 184 (394)
T PRK08898 118 GTFEAEKFAQFRASGVNRLSIGI--QSFNDAHL-KALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG---------- 184 (394)
T ss_pred CCCCHHHHHHHHHcCCCeEEEec--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC----------
Confidence 34678999999999999555543 33321100 000 0124466777888888888888888853 232
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-------CCChhHHHHHHHHHHHHHHhhCCCeE
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTAY 303 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 303 (436)
...+.+.+.++.+.+ ++ -+.|-.+.|.=||..+ -.+.+.....++.+.+.+++.+-.++
T Consensus 185 ---------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 250 (394)
T PRK08898 185 ---------QTLDEALADVETALA-FG-PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHY 250 (394)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 223344444444433 22 2356557777777532 11334566777778888888775543
No 134
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=79.80 E-value=5.4 Score=47.96 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCEEEecCcccc---------ccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWI---------ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~---------~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.+-+..|+++|+++|=|.=-+.. ..+.....|- =+..+.|+++++.|+++||+||||+-
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~-lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPE-IGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcc-cCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 56688899999999987321210 0011001111 14688999999999999999999984
No 135
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=79.72 E-value=5.8 Score=42.87 Aligned_cols=60 Identities=22% Similarity=0.101 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCEEEecCcccc-----c-cCCCCCCCC-------cc--chHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWI-----A-NDPTPPKPF-------VG--GSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~-----~-~~~~~~~~~-------~~--~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
+...+.|+++|++.|=+.=.+.. . ..|....-| ++ +.++.++++++.|.++||+||+||-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 66788999999999998433321 0 001110111 11 5799999999999999999999995
No 136
>PRK04302 triosephosphate isomerase; Provisional
Probab=77.25 E-value=58 Score=30.35 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
|.-++.+++.|++.|=||-+-.. . ..+.+.+.+..|+++||.+|++.|..
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~-------~-----~~~e~~~~v~~a~~~Gl~~I~~v~~~------------------ 124 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERR-------L-----TLADIEAVVERAKKLGLESVVCVNNP------------------ 124 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccc-------c-----CHHHHHHHHHHHHHCCCeEEEEcCCH------------------
Confidence 44588899999999976542110 1 12448889999999999999987751
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC-hhHHHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 311 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 311 (436)
++ .+.++ +..+.+++|+...= ...+.. ........++..+.||+..++.+|+.+++..
T Consensus 125 ------~~----~~~~~---~~~~~~I~~~p~~~-igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 125 ------ET----SAAAA---ALGPDYVAVEPPEL-IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred ------HH----HHHHh---cCCCCEEEEeCccc-cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 01 11111 22345666654211 111111 0112334677788899876677888886654
No 137
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=76.35 E-value=21 Score=36.87 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCC----------CCCCc---cchHHHHHHHHHHH-HHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTP----------PKPFV---GGSSKVLDNAFDWA-EKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~----------~~~~~---~~~l~~ld~~v~~a-~~~Gi~VilDlH~ 220 (436)
++.|+.+++.|+|.|-++=--.......+ +.-+. +..++.|.++|..+ +++||.+|.|++-
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~ 99 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL 99 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence 78899999999999998321111110110 00011 23578888888877 5899999999963
No 138
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=74.17 E-value=5.8 Score=42.51 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCEEEecCcccccc-----CCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIAN-----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~-----~~~~~~~~~~--~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.+-++.|+++|++++=|+=.+-... .+.......+ +.++.|..++.++.+.||++|+|+=
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 3558999999999999953221110 1111111122 5789999999999999999999984
No 139
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=72.55 E-value=38 Score=34.18 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecC-CCC-CC
Q 013777 201 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA-PG 278 (436)
Q Consensus 201 d~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NE-P~~-~~ 278 (436)
++++..|+++|++|++.- ..+. .. .=.+..++++++-+-.++++|.=+ |++|==| |.. ..
T Consensus 67 ~~~~~~A~~~~v~v~~~~-~~~~-----~~--------l~~~~~R~~fi~siv~~~~~~gfD----GIdIDwE~p~~~~~ 128 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-DVPL-----EQ--------ISNPTYRTQWIQQKVELAKSQFMD----GINIDIEQPITKGS 128 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-ccCH-----HH--------cCCHHHHHHHHHHHHHHHHHhCCC----eEEEcccCCCCCCc
Confidence 478889999999999862 1110 00 001467788887777777777432 4444333 321 12
Q ss_pred CChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 279 VALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 279 ~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
.+.+.+..+++++.+++++.++...|.+.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 24567888899999998887666555554
No 140
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.48 E-value=33 Score=30.77 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCCEEEecCc--cccccC--CCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVG--WWIAND--PTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~--~~~~~~--~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
++-.+.+++.|+..+-+.+. +..... ..+..+ .+..++.+.++++.|++.|.+.|+- |.. . +..
T Consensus 30 ~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~-~~g--~---~~~----- 97 (213)
T PF01261_consen 30 EELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVV-HSG--R---YPS----- 97 (213)
T ss_dssp HHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEE-ECT--T---ESS-----
T ss_pred HHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceee-cCc--c---ccc-----
Confidence 44556667899996555332 211100 111112 3456899999999999999998653 321 0 000
Q ss_pred CCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCC-CeEEEEe
Q 013777 236 GFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMS 307 (436)
Q Consensus 236 ~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Viv~ 307 (436)
..... ....+.+++.++.+++.-+.....+++|....+... .... .+++...++++++ +.-|.+.
T Consensus 98 -~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~i~~D 164 (213)
T PF01261_consen 98 -GPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSE--TPFS----VEEIYRLLEEVDSPNVGICFD 164 (213)
T ss_dssp -STTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSS--EESS----HHHHHHHHHHHTTTTEEEEEE
T ss_pred -ccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcccc--chhh----HHHHHHHHhhcCCCcceEEEe
Confidence 00011 356777888888888777666666667755544321 1111 5667777777774 4455554
No 141
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.59 E-value=5.2 Score=36.15 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 222 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~p 222 (436)
++.++..+.+|...|+++.+.+........+.......+.|+++++.|+++|+.+.|-.|...
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 677889999999999998763211111110111133677888899999999999999888654
No 142
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.97 E-value=53 Score=31.30 Aligned_cols=95 Identities=11% Similarity=-0.009 Sum_probs=58.3
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 013777 194 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 273 (436)
Q Consensus 194 ~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NE 273 (436)
...++.+++.++.|+..|.+.|+- |. +.. +.. .. .+...+..++.++.|+..-+.....+++|.++.
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~-~~--~~~-~~~------~~---~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLI-SA--AHA-GYL------TP---PNVIWGRLAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEE-cC--CCC-CCC------CC---HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 347889999999999999998754 32 211 100 00 134567777888888776666666677886642
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 013777 274 PLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMS 307 (436)
Q Consensus 274 P~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~ 307 (436)
+.. ....-..++...+++++ |+..+.+.
T Consensus 153 ~~~------~~~~t~~~~~~l~~~~~~~~v~~~~D 181 (275)
T PRK09856 153 YES------NVVCNANDVLHALALVPSPRLFSMVD 181 (275)
T ss_pred Ccc------cccCCHHHHHHHHHHcCCCcceeEEe
Confidence 211 11122556777778777 55555554
No 143
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=70.92 E-value=26 Score=29.36 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=50.2
Q ss_pred EEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEEcCCCCcceEEecc-CCceEEEeeCeEEEcCC
Q 013777 42 YNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISETRLTADY 110 (436)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~i~~~-nG~~lq~~~~~~v~a~~ 110 (436)
.+|=+.+++|+.+.. ++.|.++.+.......|++...+. +.|.|+.. .+.||..+...-+.+..
T Consensus 3 ~~Ly~~~~~~L~i~~---~g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 3 VQLYCRTGYFLQINP---NGTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEETTSEEEEEET---TSBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEES
T ss_pred EEEEECCCeEEEECC---CCeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEcccc
Confidence 455555799999987 457999999989999999998864 47999985 69999988655555544
No 144
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=70.41 E-value=59 Score=31.45 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
.++++.++.|+++|++.|-+.+- . ++.--.... ...++..-++++.++++||.|...+ ..|. +
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E---~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~--i~Gl-~--------- 183 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD---T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG--IFGL-G--------- 183 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc---C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE--EEeC-C---------
Confidence 57899999999999999887653 1 111000111 2366777788999999999976543 3331 0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEee-cCCCCC--CCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI-NEPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~-NEP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
...+...+.++.+.+ +. +..+.+-.+ =.|..+ ..++.....+ -+.+...|..-|+..|.+..
T Consensus 184 -------et~~d~~~~~~~l~~-l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~-~~~ia~~r~~lp~~~i~~~~ 248 (296)
T TIGR00433 184 -------ETVEDRIGLALALAN-LP--PESVPINFLVKIKGTPLADNKELSADDA-LKTIALARIIMPKAEIRLAG 248 (296)
T ss_pred -------CCHHHHHHHHHHHHh-CC--CCEEEeeeeEEcCCCccCCCCCCCHHHH-HHHHHHHHHHCCcceEEEeC
Confidence 122344455555543 22 222222222 223221 1112223333 36677778888887776664
No 145
>PRK14565 triosephosphate isomerase; Provisional
Probab=69.92 E-value=88 Score=29.72 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
|=-...|+++|++.|=|-=+ +.. .-| .+.-+.+.+=+..|.++||.+||..-...-
T Consensus 75 evS~~mLkd~G~~~viiGHS-----ERR--~~f-~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e---------------- 130 (237)
T PRK14565 75 EISAKMLKECGCSYVILGHS-----ERR--STF-HETDSDIRLKAESAIESGLIPIICVGETLE---------------- 130 (237)
T ss_pred ccCHHHHHHcCCCEEEECcc-----ccc--CcC-CcCHHHHHHHHHHHHHCCCEEEEEcCCCHH----------------
Confidence 44467889999998877321 111 112 223344555568999999999998743210
Q ss_pred CChhHHHHHHH-HHHHHHHHhCC-CCceeEEEeecCCCCC-CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCCChh
Q 013777 240 WGDSNVADTVA-VIDFLAARYAN-RPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK 316 (436)
Q Consensus 240 w~~~~~~~~~~-~~~~lA~ry~~-~~~v~g~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~ 316 (436)
......+.+ +.++|..-+.+ .+.|++| ||... +.....=....+++...||+..++..|+.+++..+.+..
T Consensus 131 --~r~~~~~~~~~~~Ql~~~l~~~~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~ 204 (237)
T PRK14565 131 --DRENGMTKDVLLEQCSNCLPKHGEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIR 204 (237)
T ss_pred --HHHccChHHHHHHHHHHHhcCCCCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHH
Confidence 000111211 23344443433 2456665 67641 111122345688888999998877788888655444455
Q ss_pred hhhcc
Q 013777 317 ELLSF 321 (436)
Q Consensus 317 ~~~~~ 321 (436)
.++..
T Consensus 205 ~l~~~ 209 (237)
T PRK14565 205 DLKSI 209 (237)
T ss_pred HHhcC
Confidence 55553
No 146
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=69.82 E-value=71 Score=29.45 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=77.3
Q ss_pred HHHHHHhCCCCEEEecCcccccc-------C---------CCCCCCCcc-------------chHHHHHHHHHHHHHcCC
Q 013777 162 DFKFLSSNGINAVRIPVGWWIAN-------D---------PTPPKPFVG-------------GSSKVLDNAFDWAEKYGV 212 (436)
Q Consensus 162 d~~~ia~~G~N~VRipv~~~~~~-------~---------~~~~~~~~~-------------~~l~~ld~~v~~a~~~Gi 212 (436)
-+...++.||..|-||+++-.-. + ..+++.+++ ..-+.||.+|+.|+..|-
T Consensus 21 r~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yAkalgC 100 (264)
T KOG4518|consen 21 RYGAAASAGFKLVEVSIPYTEPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYAKALGC 100 (264)
T ss_pred HHHHHHhCCceEEEecCCCCChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHHHHhCC
Confidence 35566889999999999862100 0 012222221 135779999999999986
Q ss_pred E-EEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHH
Q 013777 213 K-VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAG 291 (436)
Q Consensus 213 ~-VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~ 291 (436)
- |-|-.-..++++ + + ....+-+.+-++.-|..++.+.-|--+|.+|-- ..+...-.-|+++
T Consensus 101 ~rIHlmAG~~k~g~---d----~-------~~~~~ty~eNlr~AA~~l~~~kligliEPINky----t~PgY~ln~y~~A 162 (264)
T KOG4518|consen 101 CRIHLMAGIPKSGD---D----L-------ENAHQTYSENLRFAAEKLKEHKLIGLIEPINKY----TIPGYHLNNYEDA 162 (264)
T ss_pred ceEEEeccCCCCCc---h----H-------HHHHHHHHHHHHHHHHHhhhhceeeeecchhcc----cCcchhcCCHHHH
Confidence 4 333222222211 0 0 123344567788888999998877667777732 2334455567888
Q ss_pred HHHHHhhCCCeEEEE
Q 013777 292 YDAVRKYTSTAYVIM 306 (436)
Q Consensus 292 ~~aIR~~~p~~~Viv 306 (436)
.+.+..+..+.+-+.
T Consensus 163 a~Ilq~v~~~Nlqlq 177 (264)
T KOG4518|consen 163 ADILQMVQSNNLQLQ 177 (264)
T ss_pred HHHHHHhcCCceehh
Confidence 888888877666544
No 147
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=69.51 E-value=16 Score=34.09 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.7
Q ss_pred CCCCCceEEEEEcCCCCcceEEeccCCceEEEeeCeEEEcCC
Q 013777 69 TAGYSETFQIVRKDGDSSRVRLSASNGMFIQAISETRLTADY 110 (436)
Q Consensus 69 ~~~~~e~f~~~~~~~~~~~v~i~~~nG~~lq~~~~~~v~a~~ 110 (436)
-|.+.|.|..|.-.| +++.+|.--|+||..+...+|.+--
T Consensus 79 gp~p~e~f~avki~d--srIaLKsGyGKYlsinsdglvvg~q 118 (246)
T KOG3962|consen 79 GPEPEEQFMAVKISD--SRIALKSGYGKYLSINSDGLVVGRQ 118 (246)
T ss_pred CCCchhhEEEEEccC--ceEEecccccceeeecCCccEEEeh
Confidence 588899999999886 5799999999999999888887654
No 148
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=68.94 E-value=32 Score=33.37 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=44.3
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
.++|++...+.|+..|+++++-........-..-.+..++.+.+++++|+++|+.|.+.+-..
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~ 137 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA 137 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE
Confidence 588999999999999999875321100011111123477888889999999999998877643
No 149
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=68.33 E-value=78 Score=31.34 Aligned_cols=58 Identities=14% Similarity=0.357 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCEEEecC----ccccccCCCC--------CCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPV----GWWIANDPTP--------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv----~~~~~~~~~~--------~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
.+.++.|+..++|.+-+.+ +|.+-....| .+.| ..+.+.++++.|+++||.||..+-.
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y---T~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 21 KRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY---TQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred HHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc---CHHHHHHHHHHHHHcCCEEEEeecC
Confidence 4567788999999998876 2322111111 0112 4678999999999999999998754
No 150
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.20 E-value=22 Score=34.20 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.-++..+.+|...|+++- +....++.. +.......+.|..+.+.|+++|+.+.|..|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~-~~~~~~~~~-~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAG-YDVYYEQAN-NETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECC-ccccccccH-HHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 6778899999999999852 110001100 1111234677888999999999999998884
No 151
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=67.88 E-value=58 Score=32.39 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=90.9
Q ss_pred HhhhhcCCHHHHHHHHhCCC-CEEEecCccc-cccCC-------------CCC-------CCC-c-cchHHHHHHHHH-H
Q 013777 152 DHWDSYITDEDFKFLSSNGI-NAVRIPVGWW-IANDP-------------TPP-------KPF-V-GGSSKVLDNAFD-W 206 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~-N~VRipv~~~-~~~~~-------------~~~-------~~~-~-~~~l~~ld~~v~-~ 206 (436)
+||+.++ ++-++.|++.|+ +.|=||+--+ ..... ... .+| + +.+.+.+-+.|. .
T Consensus 98 ry~~P~i-~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~ 176 (320)
T COG0276 98 RYGPPFI-EEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREK 176 (320)
T ss_pred cCCCCcH-HHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHH
Confidence 5666665 688999999999 5667777321 11000 000 012 1 346666666654 3
Q ss_pred HHHc---CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCceeEEEeecCCCCCCCCh
Q 013777 207 AEKY---GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVAL 281 (436)
Q Consensus 207 a~~~---Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~--~~~~v~g~eL~NEP~~~~~~~ 281 (436)
.+++ +..+|++.|+.|-+.-.. | +.+.++..+.-+-|+++.+ .....++|+--.=|.
T Consensus 177 ~~~~~~~~~~llfSaHglP~~~~~~---G---------DpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~------ 238 (320)
T COG0276 177 LAKHPRDDDVLLFSAHGLPKRYIDE---G---------DPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPE------ 238 (320)
T ss_pred HHhcCCCCeEEEEecCCCchhhhhc---C---------CchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCC------
Confidence 4554 699999999998643211 1 3567777778888888877 666788888744332
Q ss_pred hHHHHHHHHHHHHHHhhCCCeEEEEeCCCCC
Q 013777 282 DTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 312 (436)
Q Consensus 282 ~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~ 312 (436)
+.+..+.++.++.+.+.+.+++|+++.+|-+
T Consensus 239 ~WL~P~t~~~l~~L~~~g~k~iiv~pigFvs 269 (320)
T COG0276 239 PWLQPYTDDLLEELGEKGVKKIIVVPIGFVS 269 (320)
T ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCchhh
Confidence 3455667777777777788889999877753
No 152
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=67.85 E-value=20 Score=42.35 Aligned_cols=70 Identities=16% Similarity=0.343 Sum_probs=46.2
Q ss_pred hhhhccCcChhhHHHHHhhhhcCCHHHHHHHHhCCCCEEEe-cCccccccCCCCC--------CC-Cc--cchHHHHHHH
Q 013777 136 QITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRI-PVGWWIANDPTPP--------KP-FV--GGSSKVLDNA 203 (436)
Q Consensus 136 ~~~~~~G~~~a~~~~~~h~~~~ite~d~~~ia~~G~N~VRi-pv~~~~~~~~~~~--------~~-~~--~~~l~~ld~~ 203 (436)
-+.+.+|+ + ..| ++.|+.|+++|+|.|-+ |+. .......+. +| +- ++..+.|.++
T Consensus 123 vlsK~mG~------~-~~w-----~~~L~~ik~lGyN~IhftPI~-~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~l 189 (1464)
T TIGR01531 123 VLAKLLGP------L-SEW-----EPRLRVAKEKGYNMIHFTPLQ-ELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQAL 189 (1464)
T ss_pred ehhhhcCC------H-HHH-----HHHHHHHHHcCCCEEEeCCCc-cCCCCCCCccccchhhcChhhcccCCcHHHHHHH
Confidence 35566775 2 235 78899999999999998 331 111000000 11 11 1467889999
Q ss_pred HHHHHHc-CCEEEEEc
Q 013777 204 FDWAEKY-GVKVIVDL 218 (436)
Q Consensus 204 v~~a~~~-Gi~VilDl 218 (436)
|+.+.+. ||++|+|.
T Consensus 190 V~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 190 VEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHhcCCEEEEEe
Confidence 9999985 99999998
No 153
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=67.74 E-value=68 Score=32.21 Aligned_cols=59 Identities=8% Similarity=0.140 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
-..+.++++|.++|-+-+.| .++.+.......++.|.++.+.|+++||-+++-+-.+|.
T Consensus 110 ~sve~a~~~GAdAVk~lv~~----~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYY----RPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEe----CCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 34677999999999997744 232111122357889999999999999999998655543
No 154
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.21 E-value=42 Score=34.59 Aligned_cols=146 Identities=14% Similarity=0.001 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCEEEecCccc--ccc----CCC-CCCCC---ccchHHHHHHHHHHHHHcCCEEEEEc-----------
Q 013777 160 DEDFKFLSSNGINAVRIPVGWW--IAN----DPT-PPKPF---VGGSSKVLDNAFDWAEKYGVKVIVDL----------- 218 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~--~~~----~~~-~~~~~---~~~~l~~ld~~v~~a~~~Gi~VilDl----------- 218 (436)
.+.++.++.+|||+|=.-|.-. .+. -|. ..-|. .....+-|..+|+.|+++||.|+-=+
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~ 146 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP 146 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCCh
Confidence 4678999999999997644210 000 010 00011 23478899999999999999997511
Q ss_pred -CCC-CC----CCCCCCCCCCCCC-CCCCC----hhHHHHHHHHHHHHHHHhCCCC----ceeE----------------
Q 013777 219 -HAA-PG----SQNGNEHSATRDG-FQEWG----DSNVADTVAVIDFLAARYANRP----SLAA---------------- 267 (436)
Q Consensus 219 -H~~-pg----~qng~~~sg~~~~-~~~w~----~~~~~~~~~~~~~lA~ry~~~~----~v~g---------------- 267 (436)
|.. |. ...+.-..-+..+ ...|. ++-++...+++..++++|.-+. ....
T Consensus 147 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~ 226 (418)
T COG1649 147 LTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYR 226 (418)
T ss_pred hHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHH
Confidence 100 00 0000000000000 12333 5666777789999999986543 1221
Q ss_pred EEeecCCCCCCCChh---H-----HHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 268 IELINEPLAPGVALD---T-----LKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 268 ~eL~NEP~~~~~~~~---~-----~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
+|-.+.|- .+.. . ..++++++..+||++.|+..+-++.
T Consensus 227 ~et~~~~~---~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 227 YETGKGPP---SNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred hhccCCCC---CCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 11111111 1223 2 3468999999999999998887775
No 155
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=66.91 E-value=90 Score=30.74 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 013777 197 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 276 (436)
Q Consensus 197 l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~ 276 (436)
...+.+-|+.|++.|++|+|.+-...++. ..-.+..++++++.+..+.+.| .+-|+|+==|.-.
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~------------~~~~~~~~~~fa~sl~~~~~~~----g~DGiDiD~E~~~ 122 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHV------------DLNHTAQEDNFVDSIVAIIKEY----GFDGLDIDLESGS 122 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCcc------------ccCCHHHHHHHHHHHHHHHHHh----CCCeEEEecccCC
Confidence 35677788899999999999985432211 0001355667776666666666 3567888777532
Q ss_pred CCCChhHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 013777 277 PGVALDTLKSYYKAGYDAVRKYT-STAYVIMS 307 (436)
Q Consensus 277 ~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~ 307 (436)
.......-..-+.++++.+|+.- ++-+|.+.
T Consensus 123 ~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~A 154 (312)
T cd02871 123 NPLNATPVITNLISALKQLKDHYGPNFILTMA 154 (312)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 11111123334445556666543 33444443
No 156
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=66.62 E-value=70 Score=30.31 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHH-------HHHHHHHHHHcCCEEE---EEcCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKV-------LDNAFDWAEKYGVKVI---VDLHAAPGSQNGNE 229 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~-------ld~~v~~a~~~Gi~Vi---lDlH~~pg~qng~~ 229 (436)
++-+...|++||+.|-+.|.-- ...|.+ .-.+++.+.++|+.+- |.-|. ..
T Consensus 21 ~erl~~AK~~GFDFvEmSvDEs------------DeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHR-------Rf 81 (287)
T COG3623 21 LERLALAKELGFDFVEMSVDES------------DERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHR-------RF 81 (287)
T ss_pred HHHHHHHHHcCCCeEEEeccch------------HHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhc-------cC
Confidence 7889999999999999977321 112333 3357888999998751 12221 01
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHH---HHHHHhCCCC-ceeEEEeecCCCCCCCChhHHHHHHHHHHHHHH
Q 013777 230 HSATRDGFQEWGDSNVADTVAVID---FLAARYANRP-SLAAIELINEPLAPGVALDTLKSYYKAGYDAVR 296 (436)
Q Consensus 230 ~sg~~~~~~~w~~~~~~~~~~~~~---~lA~ry~~~~-~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR 296 (436)
..|++| +...++..++.+ .||+..+=.. .+.|||+.=||.. .+.-++|.+-+-.+++
T Consensus 82 PfGS~D------~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d----~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 82 PFGSKD------EATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD----EETRQRFIEGLKWAVE 142 (287)
T ss_pred CCCCCC------HHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC----HHHHHHHHHHHHHHHH
Confidence 112221 466777776665 3566554443 6799999999984 3444444444444443
No 157
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=66.25 E-value=8.5 Score=38.12 Aligned_cols=64 Identities=31% Similarity=0.397 Sum_probs=42.9
Q ss_pred hhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 155 DSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 155 ~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
...++++.++.|++.|++ +||-++...+.+..-..-.. .-..+.+.++++.++++||.|..++-
T Consensus 112 pd~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 112 PEFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred CCcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 346889999999999988 35655554332211000011 12567788999999999999888764
No 158
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=65.91 E-value=10 Score=38.26 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++-++.+++.||..|=..+. .|. .-.+..++.+.+++++|+++||+||+|+..
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~-----ipe---~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLH-----IPE---DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHCCCCEEECCCC-----cCC---CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 45577888999887765442 121 112458899999999999999999999974
No 159
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=65.57 E-value=7 Score=41.57 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=42.5
Q ss_pred hhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 154 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 154 ~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
....++++.++.|+++|+| ||-++-..+.+..-..--.....+.+.++++.++++|++|.+||-
T Consensus 200 RPD~i~~e~L~~L~~~G~~--rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 200 RPDYCREEHIDRMLKLGAT--RVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred cCCcCCHHHHHHHHHcCCC--EEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 3456899999999999998 444443333211000000123578888899999999999888775
No 160
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=65.10 E-value=84 Score=26.49 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=62.7
Q ss_pred ccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEe-CCceEEeecCCCCceEEEEecCCCCCceEEEEEcCCC
Q 013777 6 QKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGD 84 (436)
Q Consensus 6 ~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~~ 84 (436)
|.||--..-| .|..-++.-+..-.|++..++.+.+.+|.. .++|+|.+. .+.|-+.. .+..--.|.-.-..+
T Consensus 8 ~~~L~I~~dG--~V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~---~G~ly~s~-~~~~dC~F~E~~~~n- 80 (123)
T cd00058 8 GFHLQILPDG--TVDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNK---CGKLYGSK-GFTEECLFREELLEN- 80 (123)
T ss_pred CeEEEEcCCC--cEecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECC---CCCEEECC-CCCCCCEEEEEEccC-
Confidence 6777665433 677777777788999999999999999998 999999997 34577777 788888885333322
Q ss_pred CcceEEecc--CCceEEEe
Q 013777 85 SSRVRLSAS--NGMFIQAI 101 (436)
Q Consensus 85 ~~~v~i~~~--nG~~lq~~ 101 (436)
...+..+.. .+.||-.+
T Consensus 81 ~Y~~y~S~~~~~~~ylal~ 99 (123)
T cd00058 81 NYNTYASAKYRRRWYLALN 99 (123)
T ss_pred CcEEEEEcccCCCcEEEEC
Confidence 233333433 36677544
No 161
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=64.10 E-value=9 Score=36.94 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
...+|++...+.|+..|||.++-........-..-.+..++.+.++++.|+++|++|-+.+-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 458899999999999999976422110000001112346888999999999999999988754
No 162
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=63.72 E-value=41 Score=33.03 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC-CCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-PGSQNGNEHSATRDGFQ 238 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~-pg~qng~~~sg~~~~~~ 238 (436)
.+-.+.+++.|+|.|=|-= ..- .+.-....+++.+.++.+..+.|||+|-|.+--+ |-...+...+
T Consensus 60 ~~YARllASiGINgvvlNN-----VNa-~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~Ta------- 126 (328)
T PF07488_consen 60 RDYARLLASIGINGVVLNN-----VNA-NPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGLPTA------- 126 (328)
T ss_dssp HHHHHHHHHTT--EEE-S------SS---CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S---------
T ss_pred HHHHHHHhhcCCceEEecc-----ccc-ChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcCcC-------
Confidence 4557888999999998721 000 1122335689999999999999999999987632 2111111100
Q ss_pred CCChhHHHHHHHHHHHHHH-HhCCCCceeEEEeecC----CCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe----C-
Q 013777 239 EWGDSNVADTVAVIDFLAA-RYANRPSLAAIELINE----PLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS----N- 308 (436)
Q Consensus 239 ~w~~~~~~~~~~~~~~lA~-ry~~~~~v~g~eL~NE----P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~----~- 308 (436)
+..-.+..+.|+..++ -|+--|..-||=+.=. |.+.. ---...+-+..+.+|++.++. +|+.- +
T Consensus 127 ---DPld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~-YgRthAdGANmlA~Al~P~GG--~V~wRaFVY~~ 200 (328)
T PF07488_consen 127 ---DPLDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFT-YGRTHADGANMLARALKPHGG--IVIWRAFVYNC 200 (328)
T ss_dssp ----TTSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGG-GT--HHHHHHHHHHHHGGGT---EEEEE-----T
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcc-cCCCchhhHHHHHHHhhccCC--EEEEEeEeecc
Confidence 1233566677776554 4666787777755432 32100 112344556666677777663 33332 1
Q ss_pred --CCCC--CC-----hhhhhccC-CCCCcEEEEEeecCcC
Q 013777 309 --RLGP--AD-----HKELLSFA-SGLSRVVIDVHYYNLF 338 (436)
Q Consensus 309 --~~~~--~~-----~~~~~~~~-~~~~nvv~~~H~Y~~~ 338 (436)
.|.. .| +..|.++. .-.+|||+.+- |.|.
T Consensus 201 ~~dw~d~~~DRakaAy~~F~pLDG~F~dNVilQiK-nGPi 239 (328)
T PF07488_consen 201 HQDWRDRKTDRAKAAYDEFKPLDGQFDDNVILQIK-NGPI 239 (328)
T ss_dssp T--TTTTTS-GGGHHHHHHGGGTT-S-TTEEEEEE-SSSS
T ss_pred ccccccccccHHHHHHhhccCCCCCcccceEEEee-cCCc
Confidence 1211 11 24455553 23589998876 4443
No 163
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=62.61 E-value=12 Score=31.98 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=44.0
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCC-CCCCC-ccchHHHHHHHHHHHHHcCCE-EEEEcCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPT-PPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPG 223 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~-~~~~~-~~~~l~~ld~~v~~a~~~Gi~-VilDlH~~pg 223 (436)
+++.++.|++.|++.|++.+.-- ++. -...+ ....++.+-++++.+.++|+. ++.-+...||
T Consensus 89 ~~~~l~~l~~~~~~~i~~~l~s~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 89 DEELLDELKKLGVDRIRISLESL---DEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp CHHHHHHHHHTTCSEEEEEEBSS---SHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred hHHHHHHHHhcCccEEecccccC---CHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 48999999999999999977421 110 00011 234788889999999999998 6666666654
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=61.79 E-value=19 Score=34.41 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=41.0
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.+++++...+.|+..||+.++-........-..-.+..++.+.++++.|++.|++|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 588999999999999999764321100000001123467888999999999999987654
No 165
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=61.21 E-value=1.1e+02 Score=29.86 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=38.4
Q ss_pred HHHHHHHHhCC--CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G--~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++.++.+++.| +.++=|-++|..... ...-.+++..+...+.+++.+++.|++|++-+|-
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~-~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P 88 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQ-WCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINP 88 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCc-ceeeEECcccCCCHHHHHHHHHHCCCeEEEEecC
Confidence 34566678888 555666666652111 0011233445556789999999999999998873
No 166
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=61.00 E-value=41 Score=32.56 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.++|++...+.|+..|||-++. ..++.+...++.|+++|+.|.+.+..
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDAL--------------NDVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecC--------------ChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45889999999999999993321 12678899999999999999886653
No 167
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=60.93 E-value=40 Score=32.49 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=40.7
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
...+|++...+.|+..|||.+.- ..++.+.++++.++++|+.|.+.+-.+
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~a 132 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMAI 132 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 35788999999999999995521 257888999999999999999987654
No 168
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=60.44 E-value=1.5e+02 Score=27.93 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=72.5
Q ss_pred CHHHHH-HHHhCCCCEE--EecCccccccC-CCCCC-CCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCC
Q 013777 159 TDEDFK-FLSSNGINAV--RIPVGWWIAND-PTPPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 233 (436)
Q Consensus 159 te~d~~-~ia~~G~N~V--Ripv~~~~~~~-~~~~~-~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~ 233 (436)
+.+.++ .+++.|+... =+|++.|.... +.... ...+...+.++++++.|++.|..+|.- + +|...
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~-~--~g~~~------- 110 (258)
T PRK09997 41 DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINC-L--VGKTP------- 110 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEE-C--CCCCC-------
Confidence 334444 4567888854 24554432111 00000 111234678999999999999997753 2 12100
Q ss_pred CCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCC-CeEEEEe
Q 013777 234 RDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMS 307 (436)
Q Consensus 234 ~~~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~Viv~ 307 (436)
..+. +...+.+.+.++.+++..++....+++|.+|.+..+.. .-.-..++.+.|+++++ +..+.+.
T Consensus 111 ----~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~----~~~~~~~~~~ll~~v~~~~v~l~~D 178 (258)
T PRK09997 111 ----AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGF----HLTGTRQALKLIDDVGCCNLKIQYD 178 (258)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCC----ccCCHHHHHHHHHHhCCCCEEEEeE
Confidence 0111 24456777888888887777777889999886432111 11223345566777775 4445554
No 169
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=60.39 E-value=1.1e+02 Score=26.33 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=58.1
Q ss_pred cccEEEEecCCCceEE-EcCCC-CCCcceEEEEEecCCeEEEEEe-CCceEEeecCCCCceEEEEecCC-CC--Cc-eEE
Q 013777 5 FQKYIAAESGGGTIVV-ANRTS-ASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTA-GY--SE-TFQ 77 (436)
Q Consensus 5 ~~~~~~a~~~g~~~~~-anr~~-~~~we~f~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~a~~~~~-~~--~e-~f~ 77 (436)
|||||.+...++-+.+ .--+. ..+--.|++....++.+.+|+. +|||..... +=|.|.++.| .. +. -|.
T Consensus 14 n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s~----~WI~a~s~d~~e~~sscTLF~ 89 (139)
T smart00791 14 NQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLSH----YWITADANDPDENKSACTLFR 89 (139)
T ss_pred CCceEEEEeecccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccCC----CEEEecCCCCccCCCcccEEe
Confidence 8999998775444332 11111 1244456777788999999998 999998863 4688888888 22 22 366
Q ss_pred EEEcCCCCcceEEec-cCCceEEE
Q 013777 78 IVRKDGDSSRVRLSA-SNGMFIQA 100 (436)
Q Consensus 78 ~~~~~~~~~~v~i~~-~nG~~lq~ 100 (436)
-+.-++ +.++++- -||.|+.-
T Consensus 90 Pv~~d~--~~i~lr~vq~~~~~~r 111 (139)
T smart00791 90 PLYVEM--KKIRLLNVQLGHYTKR 111 (139)
T ss_pred EEeccC--ceEEEEEecCCceEEe
Confidence 666432 3566665 46777753
No 170
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=60.21 E-value=2.1e+02 Score=29.31 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=77.0
Q ss_pred CHHHHHHHHhCCCCEEEecC----ccccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCEEEEEcCC----CCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPV----GWWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHA----APGSQN 226 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv----~~~~~~~~~~~~~~~----~~~l~~ld~~v~~a~~~Gi~VilDlH~----~pg~qn 226 (436)
.++-++.+|++|+..|=|-- +|-++ + ....+|. .-.-+.|.++++.|+++||++-|-++. .|....
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw-~-S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~ 160 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLW-D-SKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAG 160 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCcccc-C-CCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCcccc
Confidence 36667888999999987633 12111 1 1111221 114588999999999999999983321 111100
Q ss_pred CCCCCCCCCCCCCCC--hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCe-E
Q 013777 227 GNEHSATRDGFQEWG--DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA-Y 303 (436)
Q Consensus 227 g~~~sg~~~~~~~w~--~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~-~ 303 (436)
... .......+. ....+.+..-++.|..+|.. .++-||.-.+-. ...+ -.+++++.||+..|+. -
T Consensus 161 ~~~---~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp--d~lWfD~~~~~~-----~~~~--~~~~l~~~~~~~qP~~~~ 228 (384)
T smart00812 161 PTS---SDEDPDNWPRFQEFVDDWLPQLRELVTRYKP--DLLWFDGGWEAP-----DDYW--RSKEFLAWLYNLSPVKDT 228 (384)
T ss_pred ccc---cccccccchhHHHHHHHHHHHHHHHHhcCCC--ceEEEeCCCCCc-----cchh--cHHHHHHHHHHhCCCCce
Confidence 000 000011111 22333347778888899976 566688654311 1112 2567888899999976 2
Q ss_pred EEEeCCCC
Q 013777 304 VIMSNRLG 311 (436)
Q Consensus 304 Viv~~~~~ 311 (436)
||+.++++
T Consensus 229 vvvn~R~~ 236 (384)
T smart00812 229 VVVNDRWG 236 (384)
T ss_pred EEEEcccc
Confidence 34455553
No 171
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=60.16 E-value=22 Score=37.20 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcC-CCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH-AAPG 223 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH-~~pg 223 (436)
++++.++.|++.|++.|-|.+ ..+.+..- ..+. ....+.+.++++.|+++||.|.+++- +.||
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGi--ES~s~~~L-~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGY--ESGDQQIL-KNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPG 349 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcC--CCCCHHHH-HHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCC
Confidence 689999999999999777655 22211000 0011 12567788899999999999988864 4443
No 172
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=60.03 E-value=19 Score=34.89 Aligned_cols=50 Identities=26% Similarity=0.439 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
++-|+.++++|+.-|.|-+ ++.. .+...+..+++++.|.+|+| +||+|..
T Consensus 109 ~~~f~~~~~~Gv~GvKidF-----~~~d-----~Q~~v~~y~~i~~~AA~~~L--mvnfHg~ 158 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF-----MDRD-----DQEMVNWYEDILEDAAEYKL--MVNFHGA 158 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SST-----SHHHHHHHHHHHHHHHHTT---EEEETTS
T ss_pred HHHHHHHHHcCCCEEeeCc-----CCCC-----CHHHHHHHHHHHHHHHHcCc--EEEecCC
Confidence 8889999999999999954 2221 24578999999999999986 5788975
No 173
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.00 E-value=19 Score=34.60 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.-++..+.+|.+.||++ ++.....+.. +...+...+.|+.+++.|+++||++.|-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 567888899999999986 2211111111 1111335677888999999999999998874
No 174
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.46 E-value=36 Score=32.09 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
++-++..+.+|...||++.+.... .+ +.+.......+.|.++++.|+++||.+.|..|..
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~~~-~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKRPA-GV-SPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 466888999999999997653210 00 0011112245678888999999999999988753
No 175
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.25 E-value=25 Score=35.37 Aligned_cols=62 Identities=11% Similarity=-0.077 Sum_probs=43.8
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
.++|++...+.|+..|+|.++-........-..-.+..++.+.++|+.|+++|++|.+.+-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~ 184 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC 184 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 69999999999999999976532111000001112457888999999999999999766643
No 176
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=57.82 E-value=23 Score=34.04 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++-++..+.+|.+.||++-.-. ..++. .........+.|.++++.|+++|+++.|..|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~-~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYDV-YYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecCccc-ccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 6778889999999999863211 10110 01111235678889999999999999998773
No 177
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=57.78 E-value=1.2e+02 Score=28.91 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=78.5
Q ss_pred HHHhCCCCEEEecCccccccCCCCCC-CCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChh
Q 013777 165 FLSSNGINAVRIPVGWWIANDPTPPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDS 243 (436)
Q Consensus 165 ~ia~~G~N~VRipv~~~~~~~~~~~~-~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~ 243 (436)
.+++.|+...-+.++-+.......+. ...+..++.+.++++.|+..|..+|+ ++... ...+.. .+.
T Consensus 60 ~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~------~~~~~~------~~~ 126 (279)
T TIGR00542 60 AIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQ-LAGYD------VYYEEH------DEE 126 (279)
T ss_pred HHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE-ecCcc------cccCcC------CHH
Confidence 45677887666543321000000011 11234688899999999999999875 33210 000000 124
Q ss_pred HHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhC-CCeEEEEeCCC---CCCChhhhh
Q 013777 244 NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELL 319 (436)
Q Consensus 244 ~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~~~---~~~~~~~~~ 319 (436)
..+.+++.++.+++.-++.-..+++|.++.|.. .+. .++.+.|+.++ |+.-+++..+. ...+....+
T Consensus 127 ~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~--~t~-------~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~i 197 (279)
T TIGR00542 127 TRRRFREGLKEAVELAARAQVTLAVEIMDTPFM--SSI-------SKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQMEL 197 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchh--cCH-------HHHHHHHHHcCCCceEEEeCcChhhhccCCHHHHH
Confidence 567788888888888777777888997755542 122 23344556666 44444443221 111222222
Q ss_pred ccCCCCCcEEEEEeecCc
Q 013777 320 SFASGLSRVVIDVHYYNL 337 (436)
Q Consensus 320 ~~~~~~~nvv~~~H~Y~~ 337 (436)
.. ...-+.-+|.-..
T Consensus 198 ~~---~~~~i~~vHikD~ 212 (279)
T TIGR00542 198 QL---GIDKIVAIHLKDT 212 (279)
T ss_pred HH---hhhhEEEEEeCCC
Confidence 21 2245778887654
No 178
>PTZ00333 triosephosphate isomerase; Provisional
Probab=57.74 E-value=1.4e+02 Score=28.61 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
|=-...|+++|++.|=|-=+ +.. ..| .+.-+.+.+-+..|.++||.+||..=
T Consensus 79 evS~~mL~d~G~~~viiGHS-----ERR--~~f-~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 79 EISAEMLKDLGINWTILGHS-----ERR--QYF-GETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred cCCHHHHHHcCCCEEEECcc-----ccc--CcC-CCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 44467899999999977322 111 122 23347788889999999999999874
No 179
>PRK07094 biotin synthase; Provisional
Probab=57.36 E-value=71 Score=31.46 Aligned_cols=128 Identities=17% Similarity=0.100 Sum_probs=67.4
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATRD 235 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH~-~pg~qng~~~sg~~~ 235 (436)
.+++.++.|+++|++.|=+.+ ... ++.--..+. ....+..-++++.+++.||.|-.++-. .||
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~gl--Es~-~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg------------ 191 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRH--ETA-DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPG------------ 191 (323)
T ss_pred CCHHHHHHHHHcCCCEEEecc--ccC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCC------------
Confidence 578999999999999776544 221 110000010 235677888899999999986544321 121
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC--CChhHHHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG--VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 310 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~--~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 310 (436)
.+.+...+.++.+.+ ++- ..+...-+.-.|..+- ...... ..+.+++...|-.-|+..|-...++
T Consensus 192 -------et~ed~~~~l~~l~~-l~~-~~v~~~~~~P~pgTpl~~~~~~~~-~~~~~~~a~~R~~lp~~~i~~~~~~ 258 (323)
T PRK07094 192 -------QTLEDLADDILFLKE-LDL-DMIGIGPFIPHPDTPLKDEKGGSL-ELTLKVLALLRLLLPDANIPATTAL 258 (323)
T ss_pred -------CCHHHHHHHHHHHHh-CCC-CeeeeeccccCCCCCcccCCCCCH-HHHHHHHHHHHHhCcCCCCcccCCc
Confidence 223445555555543 221 1222223333444321 111112 2236777888888887655443333
No 180
>PRK06256 biotin synthase; Validated
Probab=57.29 E-value=84 Score=31.16 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=69.3
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
.++++.++.|+++|++.|=+.+ .. .+.-..... ...++..-++++.+++.||.|...+- .|. |
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~~l--Et--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-------g--- 212 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNHNL--ET--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGI--IGM-------G--- 212 (336)
T ss_pred cCCHHHHHHHHHhCCCEEecCC--cc--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeE--EeC-------C---
Confidence 3789999999999999665433 21 110000111 23567777889999999998644332 221 0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeec-CCCCC--CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN-EPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 310 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~N-EP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 310 (436)
.+.+...+.+..+.+ .+ +.-+.+..++ .|..+ ..+... ..-+.+.+...|-.-|+..|.++++.
T Consensus 213 -------Et~ed~~~~~~~l~~-l~--~~~v~i~~l~P~pGT~l~~~~~~~-~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 213 -------ESLEDRVEHAFFLKE-LD--ADSIPINFLNPIPGTPLENHPELT-PLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred -------CCHHHHHHHHHHHHh-CC--CCEEeecccccCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCeeEecCch
Confidence 233445555555542 22 2222233333 12211 111111 22344567789999999999888543
No 181
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=57.12 E-value=1.5e+02 Score=28.09 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecC-CCC
Q 013777 198 KVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA 276 (436)
Q Consensus 198 ~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NE-P~~ 276 (436)
..+...++.|+++|++|++-+.....+. + + ...=.+..++++++-+-.+.++|. +-|++|-=| |..
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~--~--~-----~~~~~~~~r~~fi~~lv~~~~~~~----~DGIdiDwE~~~~ 112 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPE--F--T-----AALNDPAKRKALVDKIINYVVSYN----LDGIDVDLEGPDV 112 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCc--c--h-----hhhcCHHHHHHHHHHHHHHHHHhC----CCceeEEeeccCc
Confidence 4577889999999999999886421110 0 0 000014566777766666666664 334444444 321
Q ss_pred CCCChhHHHHHHHHHHHHHHhh
Q 013777 277 PGVALDTLKSYYKAGYDAVRKY 298 (436)
Q Consensus 277 ~~~~~~~~~~~~~~~~~aIR~~ 298 (436)
..+.+..+.+++.+++++.
T Consensus 113 ---~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 113 ---TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred ---cHhHHHHHHHHHHHHHhhc
Confidence 2456667777777777654
No 182
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=57.06 E-value=1.6e+02 Score=29.47 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHHHhCC--CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 013777 161 EDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 238 (436)
Q Consensus 161 ~d~~~ia~~G--~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~ 238 (436)
+.++.+++.+ +++|=|-+.|+.. ...-.+++..+...+.+++.+++.|+++++.+|-.-. .+....+ ....+
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~~~---~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~--~g~~~~~-~~~~p 101 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQDN---YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS--YGGGLGS-PGLYP 101 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchhcC---CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--cCccCCC-Cceee
Confidence 3344455555 4455555555421 1111233445555678899999999999987774322 1111111 11122
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 239 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 239 ~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
.+. ...+.+.|..+.+.+.+.-.-..|-=+|||.
T Consensus 102 Dft---np~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 102 DLG---RPDVREWWGNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred CCC---CHHHHHHHHHHHHHHHhCCCceeecCCCCcc
Confidence 232 2234445655554443322112244589986
No 183
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=56.89 E-value=22 Score=33.76 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++-++..+.+|...|+++.++.. .....+.......+.|.++.+.|+++|+++.|-.|.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 57788889999999999876421 111111111234577788889999999999998764
No 184
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.23 E-value=26 Score=35.52 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=42.2
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.++|++.+.+.|+..|||.++-........-..-.+..++.+.++++.|+++|++|.+.+-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5899999999999999995543211000000011234688888999999999999988764
No 185
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.05 E-value=20 Score=35.48 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
|.+-..+.|+++|.++|.+=+-| +|+.+........+.+.++.+.|++.+|--+|.+-.+|.
T Consensus 108 l~~ws~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 108 LVEWSVKRLKEAGADAVKFLLYY----DVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 44567899999999999996533 344333344557899999999999999999999998864
No 186
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=54.85 E-value=84 Score=32.17 Aligned_cols=49 Identities=20% Similarity=0.473 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
++||+..++.||+..=|-++. + +++ ..+.|..+++.|++.|.++.|.+-
T Consensus 20 ~~di~~A~~~GIDgFaLNig~-----~---d~~---~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS-----S---DSW---QPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc-----C---Ccc---cHHHHHHHHHHHHhcCCEEEEEec
Confidence 899999999999999987741 1 122 458899999999999999888654
No 187
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.80 E-value=16 Score=35.82 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=42.6
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
..+|++...+.|+..|||.++-........-..-.+..++.+.++|+.|+++|++|...+-
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 5899999999999999996643211000011111234788899999999999999976554
No 188
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=54.77 E-value=54 Score=32.93 Aligned_cols=97 Identities=13% Similarity=-0.017 Sum_probs=59.1
Q ss_pred HHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChh
Q 013777 203 AFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALD 282 (436)
Q Consensus 203 ~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~ 282 (436)
.++.|+++|++|+-.++..+..+...-+ ..-... +....++++-+-.||+.|+=+--. |+.=+.+. .....+
T Consensus 51 ~idaAHknGV~Vlgti~~e~~~~~~~~~--~lL~~~---~~~~~~~a~kLv~lak~yGfDGw~--iN~E~~~~-~~~~~~ 122 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWTGQVEWLE--DFLKKD---EDGSFPVADKLVEVAKYYGFDGWL--INIETELG-DAEKAK 122 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCCCchHHHH--HHhccC---cccchHHHHHHHHHHHHhCCCceE--eeeeccCC-cHHHHH
Confidence 4669999999999988754321000000 000000 133456667777888888655433 33334431 123568
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 283 TLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 283 ~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
.+..|.+.+.+..++..|...|+-=
T Consensus 123 ~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 123 RLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 8999999999999999888777653
No 189
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=54.69 E-value=24 Score=33.90 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
+.-++..+.+|+..|++..+.... .+.+.......+.|.++++.|+++||++.|..|..+.. +..
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~-----~~~------- 152 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGN-----EIG------- 152 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-----CCC-------
Confidence 577888899999999997664311 11111113356888889999999999999988864321 000
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCce-eEEEeecCCCCCC--CChhHHHHHHHHHHHHH
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAPG--VALDTLKSYYKAGYDAV 295 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v-~g~eL~NEP~~~~--~~~~~~~~~~~~~~~aI 295 (436)
...+.+.++++.+ ...|.+ +-+|+.|=-.... .+++.+..++.+....|
T Consensus 153 ---~t~~~~~~li~~v----~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i 204 (279)
T cd00019 153 ---SSFEELKEIIDLI----KEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVI 204 (279)
T ss_pred ---CCHHHHHHHHHhc----CCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHh
Confidence 2234444555444 224543 4588877221100 12344666666554444
No 190
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=54.69 E-value=60 Score=31.85 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC
Q 013777 201 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW-GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV 279 (436)
Q Consensus 201 d~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w-~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~ 279 (436)
.++++.|+++|++|++-+....++ ++. +. . -...- .+..++++++-+..++++|+=+ |++|-=|+.. ..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~--~~~-~~-~-~~~~l~~~~~r~~fi~~iv~~l~~~~~D----GidiDwE~~~-~~ 117 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNG--NFD-SE-L-AHAVLSNPEARQRLINNILALAKKYGYD----GVNIDFENVP-PE 117 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCC--CCC-HH-H-HHHHhcCHHHHHHHHHHHHHHHHHhCCC----cEEEecccCC-HH
Confidence 578999999999999998764210 000 00 0 00000 0455677777777777777432 4444335432 22
Q ss_pred ChhHHHHHHHHHHHHHHhhC
Q 013777 280 ALDTLKSYYKAGYDAVRKYT 299 (436)
Q Consensus 280 ~~~~~~~~~~~~~~aIR~~~ 299 (436)
+.+.+..+.+++.+++++.+
T Consensus 118 d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 118 DREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 45567778888888887644
No 191
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=54.03 E-value=88 Score=30.27 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=51.6
Q ss_pred hhhHHHHHhhhhcCCHHHHHHHHhCCCCEEEecCccccc-cCCC-----C------CCCCccchHHHHHHHHHHHHHcCC
Q 013777 145 KAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIA-NDPT-----P------PKPFVGGSSKVLDNAFDWAEKYGV 212 (436)
Q Consensus 145 ~a~~~~~~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~-~~~~-----~------~~~~~~~~l~~ld~~v~~a~~~Gi 212 (436)
.....+.+.|..++.++....+..-|.=++++.=+...+ .+.. . ......+.|+.|++.++.+++.+.
T Consensus 135 ~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~ 214 (296)
T cd00842 135 WLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGE 214 (296)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 334556677888888877777777776555431121111 1110 0 001124589999999999999999
Q ss_pred EEEEEcCCCCCC
Q 013777 213 KVIVDLHAAPGS 224 (436)
Q Consensus 213 ~VilDlH~~pg~ 224 (436)
+|+|=.|..|+.
T Consensus 215 ~v~I~~HiPp~~ 226 (296)
T cd00842 215 KVWIIGHIPPGV 226 (296)
T ss_pred eEEEEeccCCCC
Confidence 999999998864
No 192
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=53.57 E-value=31 Score=34.96 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=41.4
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.++|++.+.+.|+..|||.++-........-..-.+..++.+.++++.|+++|+.|.+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 589999999999999999765321100000001123467888899999999999988754
No 193
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=53.30 E-value=34 Score=34.84 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=42.5
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.++|++.+.+.|+..|||.++-....-...-..-.+..++.+.++++.|++.|+.|.+..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 388999999999999999765322110000011124578899999999999999998864
No 194
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.27 E-value=1.8e+02 Score=27.60 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=55.6
Q ss_pred HHHHHhCCCCEEEecCcc-c--cccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 163 FKFLSSNGINAVRIPVGW-W--IANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 163 ~~~ia~~G~N~VRipv~~-~--~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
-+.+++.|+...=+.++. . .+..+++ ...+..++.+.++++.|++.|..+|. ++..+. .. . . .
T Consensus 58 ~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~--~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~----~~--~-~-~--- 123 (284)
T PRK13210 58 VKAIYETGVRIPSMCLSGHRRFPFGSRDP--ATRERALEIMKKAIRLAQDLGIRTIQ-LAGYDV----YY--E-E-K--- 123 (284)
T ss_pred HHHHHHcCCCceEEecccccCcCCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCEEE-ECCccc----cc--c-c-c---
Confidence 334567888766543221 1 1111111 11234788999999999999999986 232110 00 0 0 0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELIN 272 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~N 272 (436)
.+...+.+++.++.+++..++.-..+++|.+.
T Consensus 124 -~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 124 -SEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 13456777888888888777766667777653
No 195
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.06 E-value=16 Score=34.69 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
+++++.+++.|+..|||++.-...........-.++.++.+.+.++.|+++|+.|.+.+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 889999999999999998753210000000001124688888999999999999999884
No 196
>PRK09936 hypothetical protein; Provisional
Probab=52.00 E-value=1.4e+02 Score=29.30 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC-
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ- 238 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~- 238 (436)
++-++.++..||+++=+-..=+ .+. .|. +.-..|-+.++.|++.||+|+|-|+..|..- .+- +.|+..
T Consensus 41 q~~~~~~~~~G~~tLivQWt~y--G~~----~fg-~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~---q~~-~~d~~~~ 109 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQWTRY--GDA----DFG-GQRGWLAKRLAAAQQAGLKLVVGLYADPEFF---MHQ-KQDGAAL 109 (296)
T ss_pred HHHHHHHHHcCCcEEEEEeeec--cCC----Ccc-cchHHHHHHHHHHHHcCCEEEEcccCChHHH---HHH-hcCchhH
Confidence 5778999999999998754311 111 221 2346688899999999999999999887531 010 111110
Q ss_pred -CCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-CChhHHHHHHHHHHHHHHhhC-CCeEEEEeC
Q 013777 239 -EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-VALDTLKSYYKAGYDAVRKYT-STAYVIMSN 308 (436)
Q Consensus 239 -~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~-~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~ 308 (436)
.|-.....+.++.++.+.++..-. |-||=+==|+.... .+.+....++..+-+.++..+ +..+|-|+.
T Consensus 110 ~~yl~~~l~~~~~qa~~~~~~~~~~--v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISa 180 (296)
T PRK09936 110 ESYLNRQLGASLQQARLWSAAWGVP--VDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISA 180 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC--CCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 011122333334444444443322 36777777776422 233443444434334444433 345666664
No 197
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.75 E-value=24 Score=34.90 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=48.8
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
+.+-..+.|+++|.++|.+=+-| +|+.+........+.+.++.+.|++.+|--+|.+-.+|.
T Consensus 106 l~~wS~~rike~GadavK~Llyy----~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 106 LDDWSAKRIKEEGADAVKFLLYY----DVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 34556889999999999996533 444443344567899999999999999999999988764
No 198
>PLN02449 ferrochelatase
Probab=50.62 E-value=1.3e+02 Score=31.88 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=82.8
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEe-cCc--cccc------------c--CCC--CC-----CCC--ccchHHHHHHHHHH
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRI-PVG--WWIA------------N--DPT--PP-----KPF--VGGSSKVLDNAFDW 206 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRi-pv~--~~~~------------~--~~~--~~-----~~~--~~~~l~~ld~~v~~ 206 (436)
||..+ +++-++.|++.|++.|-+ |+- |-.. . .+. .. ..| .+++++.+-+.|..
T Consensus 188 Y~~P~-iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~ 266 (485)
T PLN02449 188 YWHPF-TEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIKK 266 (485)
T ss_pred cCCCC-HHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHHH
Confidence 66555 488899999999997665 552 1000 0 000 00 011 13455555554443
Q ss_pred H-HHc----CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC----CCceeEEEeecCCCCC
Q 013777 207 A-EKY----GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN----RPSLAAIELINEPLAP 277 (436)
Q Consensus 207 a-~~~----Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~----~~~v~g~eL~NEP~~~ 277 (436)
+ ++. ...+++..|+.|-+.- +..| +.+.++..+..+.|+++... .+..++|+----|
T Consensus 267 ~l~~~~~~~~~~LlFSAHGlP~~~v--~~~G---------DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp--- 332 (485)
T PLN02449 267 ELAKFSDPEEVHIFFSAHGVPVSYV--EEAG---------DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGP--- 332 (485)
T ss_pred HHHhccCcCCcEEEEecCCChhhhh--hhcC---------CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCC---
Confidence 2 222 3789999999986421 0001 24567777788888887754 3455666652222
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCC
Q 013777 278 GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 312 (436)
Q Consensus 278 ~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~ 312 (436)
.+.+..+..+++..+.+.+-++++++..+|-+
T Consensus 333 ---~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvS 364 (485)
T PLN02449 333 ---VEWLKPYTDETIVELGKKGVKSLLAVPISFVS 364 (485)
T ss_pred ---CCCCCCCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 23455667777777777777788888877654
No 199
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.48 E-value=2.3e+02 Score=27.03 Aligned_cols=118 Identities=10% Similarity=0.038 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCC
Q 013777 195 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEP 274 (436)
Q Consensus 195 ~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP 274 (436)
..++.+++.++.|++.|..+|. ++..+. .. +.. .+...+.+++.++.+++.-+.....+++|..+.+
T Consensus 96 ~~~~~~~~~i~~a~~lG~~~i~-~~~~~~---~~-------~~~--~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~ 162 (283)
T PRK13209 96 QALEIMRKAIQLAQDLGIRVIQ-LAGYDV---YY-------EQA--NNETRRRFIDGLKESVELASRASVTLAFEIMDTP 162 (283)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ECCccc---cc-------ccc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCc
Confidence 4688899999999999999876 443210 00 000 0345567777888877766666677888876433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhC-CCeEEEEeCCC---CCCChhhhhccCCCCCcEEEEEeecCc
Q 013777 275 LAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELLSFASGLSRVVIDVHYYNL 337 (436)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~~~H~Y~~ 337 (436)
.. .+ ..++.+.|++++ |+.-+++..+. ...+...... ....-+..+|.-..
T Consensus 163 ~~--~~-------~~~~~~ll~~v~~~~lgl~~D~~h~~~~~~~~~~~i~---~~~~~i~~vHikD~ 217 (283)
T PRK13209 163 FM--NS-------ISKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQMELQ---AGIGHIVAFHVKDT 217 (283)
T ss_pred cc--CC-------HHHHHHHHHHhCCCccceEeccchHHHhcCCHHHHHH---hCcCcEEEEEeccC
Confidence 21 11 234566677766 44445544221 0112222222 22345777887653
No 200
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=50.29 E-value=1.3e+02 Score=29.66 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCC-EEEecCccccccCCCCCCCCccchHHHHHH--------HHHHHHHcCCE-EEEEcCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGIN-AVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGVK-VIVDLHAAPGSQNGNE 229 (436)
Q Consensus 160 e~d~~~ia~~G~N-~VRipv~~~~~~~~~~~~~~~~~~l~~ld~--------~v~~a~~~Gi~-VilDlH~~pg~qng~~ 229 (436)
++.|..+++.|+. .|=|++. +. .|-.++.++.+.+ +++.|.++||. +++|.-..|-+
T Consensus 136 ~eel~llk~yg~aavIvLa~d------~~--~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs----- 202 (308)
T PRK00979 136 EEEIEALKESDIKAAIVLAFD------PM--DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLP----- 202 (308)
T ss_pred HHHHHHHHHhCCceEEEEEcC------CC--CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCc-----
Confidence 4669999999977 6666553 22 2334678999999 89999999994 66666554421
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 230 HSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 230 ~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
+ ...+++.++.+.++| +.|...| +-|=+.
T Consensus 203 --~------------~~~tl~aI~~iK~~~-G~pt~~G--lSNiS~ 231 (308)
T PRK00979 203 --G------------SGAAIRAIFAVKAKF-GYPVGCA--PHNAPS 231 (308)
T ss_pred --c------------HHHHHHHHHHHHHHc-CCCeEEE--EeCCch
Confidence 1 347788889999999 7888776 677665
No 201
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=50.22 E-value=1.6e+02 Score=30.30 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHcCCEEE-EEcCCCCCCCCCCCCCCCCCCCCCCC------hhHHHHHHHHHHHHHHHhCCC-CceeE
Q 013777 196 SSKVLDNAFDWAEKYGVKVI-VDLHAAPGSQNGNEHSATRDGFQEWG------DSNVADTVAVIDFLAARYANR-PSLAA 267 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~Vi-lDlH~~pg~qng~~~sg~~~~~~~w~------~~~~~~~~~~~~~lA~ry~~~-~~v~g 267 (436)
.+.++|++++....+|+-.| ++||.-.- ++. .| .|. ....+....+++.+..||.-. -..+.
T Consensus 38 ~~t~~d~i~d~~~~~~~~~ie~~l~~~~l-~~~-~~--------~wq~n~~~~~~~~dl~~~fl~h~~~~vg~e~v~kw~ 107 (428)
T COG3664 38 PFTYIDEIIDTLLDLGLDLIELFLIWNNL-NTK-EH--------QWQLNVDDPKSVFDLIAAFLKHVIRRVGVEFVRKWP 107 (428)
T ss_pred ChHHHHHHHHHHHHhccHHHHHhhcccch-hhh-hh--------hcccccCCcHhHHHHHHHHHHHHHHHhChhheeecc
Confidence 35788999999999885433 34443210 000 01 233 134566677888888888743 35788
Q ss_pred EEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCCChhhhhccCCCCCcEEEEEeecCc
Q 013777 268 IELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVIDVHYYNL 337 (436)
Q Consensus 268 ~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~~~~~~~~~~nvv~~~H~Y~~ 337 (436)
|+..|||+.. .+...+.+.|..++ |+..|. |=+++.|.......+.+ ..+.-..+..|.|..
T Consensus 108 f~~~~~pn~~-ad~~eyfk~y~~~a---~~~~p~--i~vg~~w~~e~l~~~~k--~~d~idfvt~~a~~~ 169 (428)
T COG3664 108 FYSPNEPNLL-ADKQEYFKLYDATA---RQRAPS--IQVGGSWNTERLHEFLK--KADEIDFVTELANSV 169 (428)
T ss_pred eeecCCCCcc-cchHHHHHHHHhhh---hccCcc--eeeccccCcHHHhhhhh--ccCcccceeeccccc
Confidence 9999999863 33344444444443 354543 33343332211223333 233444567777754
No 202
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.20 E-value=51 Score=32.02 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
.+-+++.+++|+..|=|--+|.........+......-..|.++++.|++.|+.|+|=.|...+.
T Consensus 35 k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~--------------- 99 (273)
T PF10566_consen 35 KRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGG--------------- 99 (273)
T ss_dssp HHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTT---------------
T ss_pred HHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcch---------------
Confidence 45688889999999999888753111111111111123568999999999999999999975431
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCC--ceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 240 WGDSNVADTVAVIDFLAARYANRP--SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~--~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
...+.++. .+.+-++|++-- .| =+|-++- +.....++|+++++.--++ +.+|-+++
T Consensus 100 -~~~~~~~~---~~~~f~~~~~~Gv~Gv-KidF~~~------d~Q~~v~~y~~i~~~AA~~--~LmvnfHg 157 (273)
T PF10566_consen 100 -NVANLEKQ---LDEAFKLYAKWGVKGV-KIDFMDR------DDQEMVNWYEDILEDAAEY--KLMVNFHG 157 (273)
T ss_dssp -BHHHHHCC---HHHHHHHHHHCTEEEE-EEE--SS------TSHHHHHHHHHHHHHHHHT--T-EEEETT
T ss_pred -hhHhHHHH---HHHHHHHHHHcCCCEE-eeCcCCC------CCHHHHHHHHHHHHHHHHc--CcEEEecC
Confidence 10111111 244445555432 22 2555654 3466777887777544332 34454554
No 203
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=50.06 E-value=17 Score=35.39 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.+++...+.|+..|+|.++-........-..-.+..++.+.++++.|+++|++|.+.+-.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 6789999999999999977421111000001112458899999999999999999998864
No 204
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=49.88 E-value=42 Score=35.53 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=37.4
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+++.++.|++.|++.|=|.+ ....+.. -..+. ....+...++++.++++||.+.+++
T Consensus 286 d~ell~~l~~aG~~~v~iGi--ES~~~~~-L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~ 343 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGT--EAAAQAT-LDHFRKGTTTSTNKEAIRLLRQHNILSEAQF 343 (497)
T ss_pred CHHHHHHHHHhCCcEEEEcc--ccCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 57788999999998666644 3221110 00111 1256778889999999999987774
No 205
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=49.48 E-value=25 Score=34.82 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=47.9
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
.+-..+.|+++|.++|.+=+-| +|+.+........+.+.++.+.|++++|--+|.+-.++.
T Consensus 108 ~~~s~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~ 168 (325)
T TIGR01232 108 VEWSAKRLKEQGANAVKFLLYY----DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDD 168 (325)
T ss_pred ccccHHHHHHhCCCeEEEEEEe----CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 3556889999999999996533 444333344457899999999999999999999988764
No 206
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=49.35 E-value=29 Score=38.16 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=46.4
Q ss_pred hhhhccCcChhhHHHHHhhhhcCCHHHHHHHHhCCCCEEEe-cCc---------cccccCCCCCCCCcc--chHHHHHHH
Q 013777 136 QITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRI-PVG---------WWIANDPTPPKPFVG--GSSKVLDNA 203 (436)
Q Consensus 136 ~~~~~~G~~~a~~~~~~h~~~~ite~d~~~ia~~G~N~VRi-pv~---------~~~~~~~~~~~~~~~--~~l~~ld~~ 203 (436)
|+.++++.+.| .+.+..++++|+.++=+ ||- |. ..++. ...+ +..+-|.++
T Consensus 11 Q~~~gFtF~~A-------------~~~l~yl~~LGIShLY~SPIftA~pGStHGYD-VvD~t---~InPeLGG~egl~rL 73 (889)
T COG3280 11 QFRGGFTFADA-------------RALLDYLADLGISHLYLSPIFTARPGSTHGYD-VVDPT---EINPELGGEEGLERL 73 (889)
T ss_pred eecCCCCHHHH-------------HHhhHHHHhcCchheeccchhhcCCCCCCCcc-CCCcc---ccChhhcChHHHHHH
Confidence 45556665555 46688999999999877 331 11 11221 1222 578899999
Q ss_pred HHHHHHcCCEEEEEcC
Q 013777 204 FDWAEKYGVKVIVDLH 219 (436)
Q Consensus 204 v~~a~~~Gi~VilDlH 219 (436)
+..+++.||.+|+|+-
T Consensus 74 vaalk~~GlGlI~DIV 89 (889)
T COG3280 74 VAALKSRGLGLIVDIV 89 (889)
T ss_pred HHHHHhcCCceEEEec
Confidence 9999999999999983
No 207
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=49.29 E-value=1e+02 Score=26.50 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=48.0
Q ss_pred eEEEEEeCCceEEeecCCCCceEEEEecCCC-CCceEEEEEcCCCCcceEEecc-CCceEEEeeCeEEEcCCC
Q 013777 41 FYNFRVNNKQFIGLENQGQGNGLVAVSNTAG-YSETFQIVRKDGDSSRVRLSAS-NGMFIQAISETRLTADYG 111 (436)
Q Consensus 41 ~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~-~~e~f~~~~~~~~~~~v~i~~~-nG~~lq~~~~~~v~a~~~ 111 (436)
.+.||..|++|+.....++-.-|....+-++ +.-.|++..+.++ .||||.. +++|-..++..| .|+..
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg--~V~ik~~~~nKfWr~s~~WI-~a~s~ 76 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNG--LVHIKSNYTNKFWRLSHYWI-TADAN 76 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEEcCCC--cEEEEecCCCceEccCCCEE-EecCC
Confidence 4688988999999876545556666666554 4557888887644 7999994 799987775555 34443
No 208
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=48.17 E-value=2e+02 Score=27.57 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=58.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCC---EEEEEcCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV---KVIVDLHAAPGSQNGNEHSATRDG 236 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi---~VilDlH~~pg~qng~~~sg~~~~ 236 (436)
++-+..+++.|+-.|=++.+- ...| .. .+..++.+.+.++.|.++|| .+|||.-..|-+.+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~----~g~P-~t-~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~---------- 169 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDD----TGIP-KD-AEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA---------- 169 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCC----CCCC-CC-HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC----------
Confidence 455777889999998876531 1111 11 13468899999999999999 89999765432110
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhCCCCceeE
Q 013777 237 FQEWGDSNVADTVAVIDFLAARYANRPSLAA 267 (436)
Q Consensus 237 ~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g 267 (436)
....-.+++.++.+.+.|.+.|.++|
T Consensus 170 -----~~~~~~~l~~i~~l~~~~pg~p~l~G 195 (261)
T PRK07535 170 -----QDAGPEVLETIRRIKELYPKVHTTCG 195 (261)
T ss_pred -----hHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 02233456777788877767787766
No 209
>PRK09989 hypothetical protein; Provisional
Probab=48.10 E-value=2.4e+02 Score=26.53 Aligned_cols=130 Identities=14% Similarity=0.098 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCC---CCCC-CccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPT---PPKP-FVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~---~~~~-~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
++.-+.+++.|+...-+-.+.-....+. ...+ -.....+.++++++.|++.|...|. +| +|... .+
T Consensus 43 ~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~~~v~-v~--~g~~~----~~--- 112 (258)
T PRK09989 43 LQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNCEQVH-VM--AGVVP----AG--- 112 (258)
T ss_pred HHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCcCEEE-EC--ccCCC----CC---
Confidence 3444456788888775532211010000 0001 0122467899999999999998664 23 22110 00
Q ss_pred CCCCCC-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCC-eEEEEe
Q 013777 236 GFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST-AYVIMS 307 (436)
Q Consensus 236 ~~~~w~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~-~~Viv~ 307 (436)
.. ....+..++.++.+++..++....+++|.+|....... +..-..++.+.|+++++. ..+.+.
T Consensus 113 ----~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~----~~~~~~~~~~ll~~v~~~~v~l~lD 178 (258)
T PRK09989 113 ----EDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHY----LFSSQYQALAIVEEVARDNVFIQLD 178 (258)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCC----ccCCHHHHHHHHHHcCCCCeEEEee
Confidence 01 24456678888898888888778788998885321111 112245667778888754 445554
No 210
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=47.96 E-value=1.3e+02 Score=26.58 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=39.5
Q ss_pred EEEEEeCCceEEeecCCCC--ceEEEEecCC-CCCceEEEEEcCCCCcceEEec-cCCceEEEeeCe
Q 013777 42 YNFRVNNKQFIGLENQGQG--NGLVAVSNTA-GYSETFQIVRKDGDSSRVRLSA-SNGMFIQAISET 104 (436)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~--~~~~a~~~~~-~~~e~f~~~~~~~~~~~v~i~~-~nG~~lq~~~~~ 104 (436)
+.||-.|++|+++-.++.. +-|....+-+ .+.-.|+|+......+.||||. .+++|....+.+
T Consensus 8 V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n 74 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPN 74 (153)
T ss_dssp EEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC
T ss_pred EEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCC
Confidence 4566669999999752223 4466666555 5678999999443445799999 589999764433
No 211
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=47.51 E-value=2.4e+02 Score=26.58 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 275 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~ 275 (436)
.++.....+..+++.|+||++.+.....+. ++ . ..=.+...+++++-+..+..+|. +-|++|==|+.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~-~~---~-----~~~~~~~~~~fa~~l~~~v~~yg----lDGiDiD~E~~ 115 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGA-GF---A-----NNLSDAAAKAYAKAIVDTVDKYG----LDGVDFDDEYS 115 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCC-Cc---c-----ccCCHHHHHHHHHHHHHHHHHhC----CCceEEeeeec
Confidence 456777888889999999999987532210 11 0 00013456666665556666774 44555555543
Q ss_pred CCCC-C-hhHHHHHHHHHHHHHHhhC-C-CeEEEEe
Q 013777 276 APGV-A-LDTLKSYYKAGYDAVRKYT-S-TAYVIMS 307 (436)
Q Consensus 276 ~~~~-~-~~~~~~~~~~~~~aIR~~~-p-~~~Viv~ 307 (436)
.... . ...-...+..+++.+|+.- | +.+|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 116 GYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred ccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 2110 0 0112334456666666544 3 5666665
No 212
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=47.50 E-value=1.8e+02 Score=31.25 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHhhhhcCCHHHHHHHHhCCCCEEEe---------cC------ccccccCCCCCCCCccchHHHHHHHHHHHHHcCC
Q 013777 148 QVLQDHWDSYITDEDFKFLSSNGINAVRI---------PV------GWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV 212 (436)
Q Consensus 148 ~~~~~h~~~~ite~d~~~ia~~G~N~VRi---------pv------~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi 212 (436)
..+..-|++|+..+..+.+..-|+=.+-+ -. ++|+...... | .+.|+.|-..++.|++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~td--p--~~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTD--P--IDQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCC--c--hHHhhHHHHHHHHHHhcCC
Confidence 55778899999999988887766543322 21 1333322222 2 2359999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeE
Q 013777 213 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAA 267 (436)
Q Consensus 213 ~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g 267 (436)
+|-|=.|..||... -...|........-++-+.|+.+|-+++.+--
T Consensus 360 kVhil~HIPpG~~~---------c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~ 405 (577)
T KOG3770|consen 360 KVHILGHIPPGDGV---------CLEGWSINFYRIVNRFRSTIAGQFYGHTHIDE 405 (577)
T ss_pred EEEEEEeeCCCCcc---------hhhhhhHHHHHHHHHHHHhhhhhccccCccee
Confidence 99999999987410 11234433344444666778888877776533
No 213
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.78 E-value=91 Score=31.21 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=39.1
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
+.+|++...+.|+..|||.++.- ..+.+.+.+++|++.|+.|.+.+-..
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~a 138 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMMS 138 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57899999999999999965321 12457889999999999998877643
No 214
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=46.28 E-value=94 Score=26.61 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=53.6
Q ss_pred cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCceeEEEeecCCCCCCCChhHHHHH
Q 013777 210 YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVALDTLKSY 287 (436)
Q Consensus 210 ~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~--~~~~v~g~eL~NEP~~~~~~~~~~~~~ 287 (436)
....+|+..|+.|-..-. .+ +.+.++..+..+.|+++.. ..+..++|+-.-=|. +.+...
T Consensus 17 ~~~~llfsaHgiP~~~~~-------~g-----d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~------~Wl~P~ 78 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK-------KG-----DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPG------EWLEPS 78 (135)
T ss_pred CCCEEEEEcCCCHHHHhh-------CC-----CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCC------CCCCCC
Confidence 578999999999853210 01 2577888889999999887 555556665322121 223334
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCCC
Q 013777 288 YKAGYDAVRKYTSTAYVIMSNRLG 311 (436)
Q Consensus 288 ~~~~~~aIR~~~p~~~Viv~~~~~ 311 (436)
..++++.+.+.+-+++++++.+|-
T Consensus 79 ~~~~l~~l~~~G~~~i~v~p~gF~ 102 (135)
T cd00419 79 TDDALEELAKEGVKNVVVVPIGFV 102 (135)
T ss_pred HHHHHHHHHHcCCCeEEEECCccc
Confidence 556666666667778888876554
No 215
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=46.28 E-value=63 Score=30.43 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=65.5
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHH----HHHcCCEEEEEcCCCCCCCCCCCCCCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDW----AEKYGVKVIVDLHAAPGSQNGNEHSATR 234 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~----a~~~Gi~VilDlH~~pg~qng~~~sg~~ 234 (436)
+.+|++.|+-.|+..|=-+- .+|.+. ...+.+++.+++++.+ |.+.||++-+.+---|...+
T Consensus 13 ~~eDlekMa~sGI~~Vit~A-----hdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP-------- 78 (254)
T COG1099 13 GFEDLEKMALSGIREVITLA-----HDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIP-------- 78 (254)
T ss_pred cHHHHHHHHHhChhhhhhcc-----cCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCC--------
Confidence 46999999999998875432 233322 2334577888887755 89999877665543343211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 235 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 235 ~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
.+ ....++.|-+-++ +..|+++. |-.....+.+. ++..+.-...-|.. +.+||++.
T Consensus 79 --------~e---~~~~l~~L~~~l~-~e~VvAiG---EiGLe~~t~~E-~evf~~QL~LA~e~--dvPviVHT 134 (254)
T COG1099 79 --------PE---LEEVLEELEELLS-NEDVVAIG---EIGLEEATDEE-KEVFREQLELAREL--DVPVIVHT 134 (254)
T ss_pred --------ch---HHHHHHHHHhhcc-cCCeeEee---ecccccCCHHH-HHHHHHHHHHHHHc--CCcEEEeC
Confidence 12 4445666666666 45554442 33222223333 33333333444554 35677774
No 216
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=46.20 E-value=62 Score=31.97 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~----~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
.+.|+++++.|+|+-=. -.-.+|.- .++|.+..++.|.++++.|++.|+..+.-+|-
T Consensus 18 ~~l~~f~~~~kmN~YiY----APKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIY----APKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHHTT--EEEE------TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred HHHHHHHHHcCCceEEE----CCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 46789999999996532 11112211 14566778999999999999999999999994
No 217
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=46.19 E-value=1.8e+02 Score=24.55 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=59.4
Q ss_pred cccEEEEecCCCceEEEcCCCCCCcceEEEEEecCCeEEEEEe-CCceEEeecCCCCceEEEEecCCCCCceEEEEEcCC
Q 013777 5 FQKYIAAESGGGTIVVANRTSASGWETFRLWRVNETFYNFRVN-NKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDG 83 (436)
Q Consensus 5 ~~~~~~a~~~g~~~~~anr~~~~~we~f~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~ 83 (436)
+|.||---.-| .|-.-++.-+..--|++..++.+.+.+|.. .+.|+|.+.- +.|-+... +..--.|.=.-..
T Consensus 11 ~~~~L~I~~~G--~V~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~---G~ly~s~~-~~~dC~F~E~~~~- 83 (126)
T smart00442 11 NGQHLQILPDG--TVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKC---GKLYGSKN-FTEDCVFREEMEE- 83 (126)
T ss_pred CCeEEEEcCCc--eEecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCC---CCEEEccc-CCCCcEEEEEecc-
Confidence 45666554322 566667777788889999999999999998 8999999973 45777666 6666677422222
Q ss_pred CCcceEEeccCC--ceEEEe
Q 013777 84 DSSRVRLSASNG--MFIQAI 101 (436)
Q Consensus 84 ~~~~v~i~~~nG--~~lq~~ 101 (436)
+...+..+..+. .||-.+
T Consensus 84 n~y~~y~S~~~~~~~ylal~ 103 (126)
T smart00442 84 NGYNTYASAKYRKRWYVALN 103 (126)
T ss_pred CCeEEEEEcccCCceEEEEC
Confidence 234444555444 455443
No 218
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.90 E-value=1e+02 Score=30.79 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=38.4
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.+|++...+.|+..|||.++.- ..+.+.+.++++++.|+.|.+.+-.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 57899999999999999966321 1245788999999999999877654
No 219
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.71 E-value=37 Score=32.36 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++-++..+.+|..+|+++.+.-. ... ..+...+...+.|+++.+.|+++||++.+..|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~-~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAG-YLT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 56788899999999999653211 011 111112345678899999999999999998774
No 220
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.28 E-value=85 Score=30.09 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
+..+.++++|++.+|=-. +.+...+..|.+-.++-|..+.+.|++.||.++-+.|..
T Consensus 33 ~~a~~~~~~g~~~~r~g~----~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGA----YKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred HHHHHHHHcCCCEEEecc----cCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 334458899999999643 223344444555467889999999999999999999964
No 221
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=44.92 E-value=2.3e+02 Score=26.99 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHHHHHhCCC--CEEEecCccccccCCCCCC--CCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 161 EDFKFLSSNGI--NAVRIPVGWWIANDPTPPK--PFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 161 ~d~~~ia~~G~--N~VRipv~~~~~~~~~~~~--~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.++.+++.|| .+|=|-..|... ...- .+++..+.-...+|+.+++.|++|++.+|.
T Consensus 28 ~~~~~~~~~~iP~d~~~lD~~~~~~---~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 28 EVIDGMRENDIPLDGFVLDDDYTDG---YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred HHHHHHHHcCCCccEEEECcccccC---CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeCh
Confidence 34555566664 355555444321 1112 344456666889999999999999998874
No 222
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=44.86 E-value=35 Score=33.96 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCCCEEEecCcc---ccccCCCCC-----CCCcc-----c-hHHHHHHHHHHHHHcCCEEEEEcCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPFVG-----G-SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~---~~~~~~~~~-----~~~~~-----~-~l~~ld~~v~~a~~~Gi~VilDlH~~pg~q 225 (436)
.+-++.|+..++|++-+.+.- |.+.-+.-| +.+.. - ..+.+.++|+.|+++||.||..+-. ||..
T Consensus 21 k~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid~-PGH~ 99 (351)
T PF00728_consen 21 KRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEIDT-PGHA 99 (351)
T ss_dssp HHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEEE-SSS-
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeeccC-chHH
Confidence 456888999999999987742 111111111 00111 1 4588999999999999999997743 3321
Q ss_pred CCC-------CCC-----C----CCCCC----CCC-C-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-----
Q 013777 226 NGN-------EHS-----A----TRDGF----QEW-G-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG----- 278 (436)
Q Consensus 226 ng~-------~~s-----g----~~~~~----~~w-~-~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~----- 278 (436)
... ..+ . ..... ... . +...+-..++++.+++.|...---+| .-|.....
T Consensus 100 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHiG---gDEv~~~~~~~~~ 176 (351)
T PF00728_consen 100 EAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHIG---GDEVNYNCWNNSP 176 (351)
T ss_dssp HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEEE----TSTTTHHHHCHH
T ss_pred HHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEeC---CcccccccccCCH
Confidence 100 000 0 00000 000 0 34455566788888888873222244 34443200
Q ss_pred ------------CChhHHHHHHHHHHHHHHhhCCCeEEEEeCCC
Q 013777 279 ------------VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 310 (436)
Q Consensus 279 ------------~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~ 310 (436)
...+.+..|.+++.+.+++.+.+ +++-++.+
T Consensus 177 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~W~D~~ 219 (351)
T PF00728_consen 177 ECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PIIWNDML 219 (351)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEEESTTT
T ss_pred HHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEEEcccc
Confidence 01123445677888889998765 55556533
No 223
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=44.72 E-value=35 Score=28.50 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCCC
Q 013777 200 LDNAFDWAEKYGVKVIVDLHAAPGSQN 226 (436)
Q Consensus 200 ld~~v~~a~~~Gi~VilDlH~~pg~qn 226 (436)
++++++..+++||.++||+-..|.|++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~ 28 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRK 28 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCC
Confidence 688999999999999999999998864
No 224
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=44.64 E-value=2.3e+02 Score=26.85 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 013777 194 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 272 (436)
Q Consensus 194 ~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~N 272 (436)
+..++.+.++++.|++.|..+|+ +|. |.. + . . ......+++++.++.|++. .....+++|-++
T Consensus 80 ~~~~~~l~~~i~~A~~lGa~~vv-~h~--g~~-~----~---~---~~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~~ 142 (273)
T smart00518 80 EKSIERLIDEIKRCEELGIKALV-FHP--GSY-L----K---Q---SKEEALNRIIESLNEVIDE--TKGVVILLETTA 142 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-Ecc--ccc-c----C---C---CHHHHHHHHHHHHHHHHhc--cCCcEEEEeccC
Confidence 45788999999999999998766 564 210 0 0 0 0135567778888888873 333445666553
No 225
>PLN02849 beta-glucosidase
Probab=43.96 E-value=21 Score=37.91 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=33.7
Q ss_pred hcCCCeEEeecccccCCC-------CCcCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 367 TSNGPLTFVGEWTCEWNV-------KDASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 367 ~~~~p~v~vGEwg~~~~~-------~~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
+.+.||++|.|.|..... +....+.++++++..+++.++ .-.|++.|++-.
T Consensus 382 rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~D 441 (503)
T PLN02849 382 SYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMD 441 (503)
T ss_pred hcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 455667999999976321 111223456677777777654 457999999976
No 226
>TIGR03356 BGL beta-galactosidase.
Probab=43.89 E-value=24 Score=36.58 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=34.2
Q ss_pred hcCCCeEEeecccccCCC---C-----CcCHHHHHHHHHHHHHHHcc--CCCcEEEEceecCCCCCC
Q 013777 367 TSNGPLTFVGEWTCEWNV---K-----DASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWS 423 (436)
Q Consensus 367 ~~~~p~v~vGEwg~~~~~---~-----~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~~~~~Ws 423 (436)
+.+.||++|.|.|..... . ......++++++..+.+.++ .-.|+++|++-. +-.|.
T Consensus 334 rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~D-n~ew~ 399 (427)
T TIGR03356 334 DYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLD-NFEWA 399 (427)
T ss_pred hcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeccccc-ccchh
Confidence 344567999999975321 0 11122345666666666644 467999999976 33443
No 227
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=43.43 E-value=2.8e+02 Score=25.92 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=71.0
Q ss_pred HHHHH-HHHhCCCCEEEe--cCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCC
Q 013777 160 DEDFK-FLSSNGINAVRI--PVGWWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 233 (436)
Q Consensus 160 e~d~~-~ia~~G~N~VRi--pv~~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~ 233 (436)
-++++ .+++.|+..+=+ |++-|...... .+++. ....+.++++++.|++.|..+|. ++. |.. .+
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~lg~~~i~-~~~--g~~-----~~- 110 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGRE-EEFREGVALAIAYARALGCPQVN-CLA--GKR-----PA- 110 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccH-HHHHHHHHHHHHHHHHhCCCEEE-ECc--CCC-----CC-
Confidence 34444 456888875544 43323211100 01111 23468899999999999999875 332 210 00
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 013777 234 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMS 307 (436)
Q Consensus 234 ~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~Viv~ 307 (436)
. .. .+...+.+++.++.++..-++..-.+++|..|=+..+. .+..-.+++.+.|++++ |+.-|.+.
T Consensus 111 --~-~~-~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~----~~l~t~~~~~~li~~v~~~~~~i~~D 177 (254)
T TIGR03234 111 --G-VS-PEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPG----FFLTTTEQALAVIDDVGRENLKLQYD 177 (254)
T ss_pred --C-CC-HHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCC----ChhcCHHHHHHHHHHhCCCCEeEeee
Confidence 0 00 02345667788888887666666667788665332111 12344566677788777 44445554
No 228
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=43.30 E-value=13 Score=38.92 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=35.0
Q ss_pred hcCCCeEEeecccccCCCC--------CcCHHHHHHHHHHHHHHHcc--CCCcEEEEceecCCCCCChHHHHhCCC
Q 013777 367 TSNGPLTFVGEWTCEWNVK--------DASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWSLKWMIENGY 432 (436)
Q Consensus 367 ~~~~p~v~vGEwg~~~~~~--------~~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~~~~~Ws~~~~~~~g~ 432 (436)
+.+.||++|.|.|...... ....+.+++++...+++.++ .-.|+++|++-. +-.|..-...+-|+
T Consensus 352 ~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~D-n~Ew~~Gy~~rfGl 426 (455)
T PF00232_consen 352 RYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLD-NFEWAEGYKKRFGL 426 (455)
T ss_dssp HHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB----BGGGGGGSE--S
T ss_pred ccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeecccc-ccccccCccCccCc
Confidence 3444889999999864321 11123456777777777754 456999999977 34454333344443
No 229
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=43.17 E-value=2.2e+02 Score=26.71 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=76.9
Q ss_pred HHHHHHHHhCCCCEEEe-cCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 238 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRi-pv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~ 238 (436)
++--+.+++.|+..+-+ |+.-- +..+.+ .-....++.+.++++.|++.|..+++-............
T Consensus 48 ~~l~~~l~~~gl~i~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~--------- 115 (274)
T COG1082 48 AELKELLADYGLEITSLAPFSNN-LLSPDE--EEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPD--------- 115 (274)
T ss_pred HHHHHHHHHcCcEEEeecccCCC-cCCCch--hhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCC---------
Confidence 34445567888887763 33220 112211 111346888888999999999987776554322111000
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCC-eEEEEeCCC---CCCC
Q 013777 239 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST-AYVIMSNRL---GPAD 314 (436)
Q Consensus 239 ~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~-~~Viv~~~~---~~~~ 314 (436)
+.....+.+.+.++.++..-+.. ++.|.+||+. .....+... .+.++.|++.+.. ..+++..+. ...+
T Consensus 116 -~~~~~~~~~~~~l~~l~~~a~~~----~i~l~~e~~~--~~~~~~~~~-~~~~~~~~~~~~~~v~~~lD~~H~~~~~~d 187 (274)
T COG1082 116 -SPEEARERWAEALEELAEIAEEL----GIGLALENHH--HPGNVVETG-ADALDLLREVDSPNVGLLLDTGHAFFAGED 187 (274)
T ss_pred -CCcccHHHHHHHHHHHHHHHHHh----CCceEEeecC--CccceeecC-HHHHHHHHhcCCCceEEEEecCchhhccCC
Confidence 11122255556666555543333 2334455421 111223333 5677778877754 445555432 1112
Q ss_pred hhhhhccCCCCCcEEEEEeecCcC
Q 013777 315 HKELLSFASGLSRVVIDVHYYNLF 338 (436)
Q Consensus 315 ~~~~~~~~~~~~nvv~~~H~Y~~~ 338 (436)
+..... ....-+.-+|.....
T Consensus 188 ~~~~~~---~~~~rI~hvH~kD~~ 208 (274)
T COG1082 188 PLEAIR---KLGDRIGHVHLKDAD 208 (274)
T ss_pred HHHHHH---HhhcceeEEEEeecC
Confidence 222222 122266777776553
No 230
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=42.98 E-value=24 Score=33.11 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 193 VGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 193 ~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
.-+++++..+.|+.|+..||..+|.
T Consensus 239 L~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 239 LTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred chhhHHHHHHHHHHHHhcCceeEee
Confidence 4579999999999999999999885
No 231
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.54 E-value=79 Score=31.64 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=48.5
Q ss_pred hhHHHHHhhhh-------cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 146 APQVLQDHWDS-------YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 146 a~~~~~~h~~~-------~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
.-+.++++|.. -.|.++.+.+.++|.+.|++-++-=..-....-....-..+..|-++.+.+.++++.||.|
T Consensus 140 ~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 140 FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 34556667742 3589999999999999999986531110000000000137899999999999999999998
No 232
>PRK09389 (R)-citramalate synthase; Provisional
Probab=42.07 E-value=57 Score=34.49 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++|++.+.+.|...|+|.++-+...-...-..-.+..++.+.++++.|+++|+.|.+++-.
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 7899999999999999977643221000001112457888888999999999999987753
No 233
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=42.04 E-value=45 Score=26.75 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=48.1
Q ss_pred hHHHHHHH---HHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 013777 196 SSKVLDNA---FDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 272 (436)
Q Consensus 196 ~l~~ld~~---v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~N 272 (436)
+++.|.+. ++..++.+++|++|.++-.+ ..++..|.+++.- .+ +++-.
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~-------------------------~~~~~~ll~~lg~--~~--~~~n~ 53 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGAG-------------------------SDILPRLLERLGC--DV--IELNC 53 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTSTT-------------------------HHHHHHHHHHTTC--EE--EEESS
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCHH-------------------------HHHHHHHHHHcCC--cE--EEEec
Confidence 34445444 44678999999999886432 1366777777654 22 34444
Q ss_pred CCCCC--C-CChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 273 EPLAP--G-VALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 273 EP~~~--~-~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
+|... . ..++-..+.++.+.+.+++.+.+..+++.
T Consensus 54 ~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~D 91 (104)
T PF02879_consen 54 DPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFD 91 (104)
T ss_dssp S-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-
T ss_pred ccccccccccccccccchhHHHHHHhhccCceEEEEEC
Confidence 45431 1 11111126778888899998887766654
No 234
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=41.78 E-value=4e+02 Score=27.19 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHhCCCCEEEecCcc-ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~-~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
-++++.++.+++.|+ .|=|.+.= ....|-..+..--.+.++++-+.++.++++++.+.+-.-..
T Consensus 101 LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~-------------- 165 (378)
T COG0641 101 LLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVN-------------- 165 (378)
T ss_pred ccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEc--------------
Confidence 367899999999999 88776631 11111111111113578999999999999997743321111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------CCChhHHHHHHHHHHHHHHhhCC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTS 300 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p 300 (436)
+.+.++..++.++|++.. ...+-.+.++-..... ..+...+.+|+....+..++.+-
T Consensus 166 ------~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~ 228 (378)
T COG0641 166 ------RQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDV 228 (378)
T ss_pred ------hhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 134445556666666544 2222223444433321 24567899999999999888873
No 235
>PLN02814 beta-glucosidase
Probab=41.75 E-value=24 Score=37.48 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=32.9
Q ss_pred hcCCCeEEeecccccCCCCC-----cCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 367 TSNGPLTFVGEWTCEWNVKD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 367 ~~~~p~v~vGEwg~~~~~~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
+.+.||++|.|.|......+ ...+.+++++++..++.+. .-.|+++|++-.
T Consensus 384 rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllD 441 (504)
T PLN02814 384 SYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMID 441 (504)
T ss_pred hcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 34566799999998643211 1223456666666666654 357999999976
No 236
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=41.41 E-value=35 Score=33.03 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
.+.+++.+++.|++.|||.++-....-....+.-.+..++.+.++++.|+++|+.|.+.
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 35678899999999999966421110000000112347888999999999999999885
No 237
>PRK14567 triosephosphate isomerase; Provisional
Probab=41.18 E-value=3.3e+02 Score=26.17 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
|=-...|+++|++.|=|--+ +.. .+-.+.-+.+.+-+..|.++||.+|+..-
T Consensus 75 EvS~~mLkd~G~~yviiGHS-----ERR---~~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 75 EISARMLEDIGCDYLLIGHS-----ERR---SLFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred cCCHHHHHHcCCCEEEECcc-----ccc---CccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34467889999999877322 111 12223446677788899999999999874
No 238
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=41.15 E-value=81 Score=31.35 Aligned_cols=56 Identities=32% Similarity=0.490 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
..+++-++.|.++|++-||+..+ .+ .+...+..-..+..|+++||-|=+.+-+.||
T Consensus 121 ~~~~e~l~~L~eAGLDEIRfHp~-------~~----~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg 176 (353)
T COG2108 121 LATEEALKALAEAGLDEIRFHPP-------RP----GSKSSEKYIENLKIAKKYGMDVGVEIPAIPG 176 (353)
T ss_pred cCCHHHHHHHHhCCCCeEEecCC-------Cc----cccccHHHHHHHHHHHHhCccceeecCCCcc
Confidence 46799999999999999998543 11 1234566667788899999999888877765
No 239
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=40.04 E-value=3.5e+02 Score=26.93 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC-----hhHHHHHHHHHHHHHHHhCCCCceeEEEe
Q 013777 197 SKVLDNAFDWAEK-YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSLAAIEL 270 (436)
Q Consensus 197 l~~ld~~v~~a~~-~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~-----~~~~~~~~~~~~~lA~ry~~~~~v~g~eL 270 (436)
...+.++...-++ .+++|+|-+.....+. ..|. +..++++++-+-.+.++|.=+ |++|
T Consensus 55 ~~~~~~~~~lk~~~p~lkvlisiGG~~~~~------------~~f~~~~~~~~~r~~fi~~iv~~l~~~~~D----Gidi 118 (362)
T cd02872 55 LGLYERFNALKEKNPNLKTLLAIGGWNFGS------------AKFSAMAASPENRKTFIKSAIAFLRKYGFD----GLDL 118 (362)
T ss_pred hhHHHHHHHHHhhCCCceEEEEEcCCCCCc------------chhHHHhCCHHHHHHHHHHHHHHHHHcCCC----Ceee
Confidence 3445555544444 4899999886432110 1122 356677777676777777533 3333
Q ss_pred ecC-CCCC---CCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 271 INE-PLAP---GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 271 ~NE-P~~~---~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
-=| |... ..+.+.+..+++++.+++++..++..|.+.
T Consensus 119 DwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 119 DWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred eeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 223 3211 123456788888888888877555555544
No 240
>PLN02389 biotin synthase
Probab=39.57 E-value=2.7e+02 Score=28.36 Aligned_cols=154 Identities=13% Similarity=0.039 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
.++++.++.|++.|++.+-+ .... .+.-.... ....++..-+.++.|++.||.|-. |...|. |
T Consensus 175 ~l~~E~l~~LkeAGld~~~~--~LeT--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~s--g~IiGl-------g--- 238 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNH--NLDT--SREYYPNVITTRSYDDRLETLEAVREAGISVCS--GGIIGL-------G--- 238 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEe--eecC--ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeE--EEEECC-------C---
Confidence 46899999999999997655 3221 01000011 123677777889999999998733 333221 0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC--CChhHH-HHHHHHHHHHHHhhCCCeEEEEeCCCCC
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG--VALDTL-KSYYKAGYDAVRKYTSTAYVIMSNRLGP 312 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~--~~~~~~-~~~~~~~~~aIR~~~p~~~Viv~~~~~~ 312 (436)
+..+..++.+..|.+ +..++.-+.+..++ |.... .+.... ..-+-+++...|-.-|+..|-+..+|-.
T Consensus 239 -------Et~edrv~~l~~Lr~-L~~~~~~v~l~~l~-P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~ 309 (379)
T PLN02389 239 -------EAEEDRVGLLHTLAT-LPEHPESVPINALV-AVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVR 309 (379)
T ss_pred -------CCHHHHHHHHHHHHh-cccCCcEEecccce-ecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccc
Confidence 223344444444433 33234333333332 22100 000111 1133467788898999998888766632
Q ss_pred CChh-hhhccCCCCCcEEEEEeecC
Q 013777 313 ADHK-ELLSFASGLSRVVIDVHYYN 336 (436)
Q Consensus 313 ~~~~-~~~~~~~~~~nvv~~~H~Y~ 336 (436)
.... .-+.+ ...-|.++.=.+|-
T Consensus 310 l~~~~~~~~l-~~GAN~~~~g~~~L 333 (379)
T PLN02389 310 FSMAEQALCF-LAGANSIFTGDKLL 333 (379)
T ss_pred cChhHHHHHH-HhCCCEEEECCccc
Confidence 1111 12222 23346666555543
No 241
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=38.71 E-value=37 Score=33.08 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=43.5
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
...+|++...+.|+..|-|.++-........-..-.+..++.+.++++.|+++|++|-+.+
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3689999999999999998664321110001111134589999999999999999998887
No 242
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.43 E-value=3.3e+02 Score=25.32 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 239 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~ 239 (436)
|-....|+++|+..|=|--+-.. .+-.+.=+.+-+-+..|...||+||..+--.-.- ...+
T Consensus 76 EiS~~mlkd~G~~wVIlGHSERR--------~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~lee--------REaG--- 136 (247)
T KOG1643|consen 76 EISAEMLKDLGAEWVILGHSERR--------HVFGESDEFIADKTAHALAEGLKVIACIGETLEE--------REAG--- 136 (247)
T ss_pred ccCHHHHHhCCCCEEEecchhhh--------hhhCCchHHHHHHHHHHHHcCCeEEEEecccHHh--------hhcC---
Confidence 55577899999999987433211 1112233556666788999999999987432100 0011
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-CCChhHHHHHHHHHHHHHHhhC---------CCeEEEEeCC
Q 013777 240 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYT---------STAYVIMSNR 309 (436)
Q Consensus 240 w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~---------p~~~Viv~~~ 309 (436)
...+-..+-+..++++-++..+|+ +.=||... +.....-.+-+|+....||+-. ...-||.++.
T Consensus 137 ---~t~dVv~~Ql~aiad~v~~w~niv---iAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGS 210 (247)
T KOG1643|consen 137 ---KTLDVVFRQLKAIADKVKDWSNIV---IAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGS 210 (247)
T ss_pred ---chHHHHHHHHHHHHHhcCCccceE---EEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccc
Confidence 234555566778888888877653 45578752 1111111223444445555422 2334666654
Q ss_pred CCCCChhhhhccCC
Q 013777 310 LGPADHKELLSFAS 323 (436)
Q Consensus 310 ~~~~~~~~~~~~~~ 323 (436)
-...+..++.+.++
T Consensus 211 V~g~N~~el~~~~d 224 (247)
T KOG1643|consen 211 VNGGNCKELAKKPD 224 (247)
T ss_pred cccccHHHhccccc
Confidence 43345566666543
No 243
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=38.14 E-value=3.6e+02 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
|=-...|++.|++.|=|-=+ +.. .+-.+.-+.+.+-+..|.++||.+||..=
T Consensus 74 evS~~mL~d~G~~~viiGHS-----ERR---~~f~Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 74 EISAEMLKDAGAKYVIIGHS-----ERR---QYFGETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----ccc---CcCCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 34467899999999987322 111 12233567788899999999999999874
No 244
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=38.11 E-value=3e+02 Score=24.80 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=67.7
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCC
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 232 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg 232 (436)
||..-|+..|++.+++.|+..|=|-.. +. ..+.. ..+..-++.|++.||.|=+=....+.+
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikat-----eG---~~~~D---~~~~~n~~~A~~aGl~vG~Yhf~~~~~-------- 68 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLT-----EG---TTYRN---PYAASQIANAKAAGLKVSAYHYAHYTS-------- 68 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEc-----CC---CCccC---hHHHHHHHHHHHCCCeeEEEEEEecCC--------
Confidence 455557778999999999984433221 11 11111 346777899999999763321111100
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~ry~~-~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
. ...++++..+++.+. .+.- .+.++.+|+=.-+. ...+.++..+..+.|++.+-..++|..
T Consensus 69 -----~---~~a~~eA~~f~~~~~-~~~~~~~~~~~lD~E~~~~-----~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 69 -----A---ADAQAEARYFANTAK-SLGLSKNTVMVADMEDSSS-----SGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred -----h---HHHHHHHHHHHHHHH-HcCCCCCCceEEEeecCCC-----cchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 0 133444445555553 3322 22334456533221 345777888888899988764555554
No 245
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=37.82 E-value=57 Score=32.99 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~--~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.++++.++.|++.|++.|.|.+.-. ++...+.. ..+.++.+-+.++.++++|+.|.|..
T Consensus 101 ll~~~~~~~L~~~g~~~v~iSldg~---~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 101 GLTEARLAALKDAGLDHIQLSFQDS---DPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred cCCHHHHHHHHHcCCCEEEEEecCC---CHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 3788999999999999999977421 11000011 12467888888999999999987755
No 246
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=37.65 E-value=2.4e+02 Score=28.57 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCE-EEEEcCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~----~~~l~~ld~~v~~a~~~Gi~-VilDlH~~pg~qng~~~s 231 (436)
.++++.++.|+++|++.|-+-+ ... ++.-..... ...++..-+.++.|++.||. |-.++-- |
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~l--ET~-~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~--G-------- 226 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQ--ETY-NPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALL--G-------- 226 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEE--ecC-CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEe--c--------
Confidence 3689999999999999555432 211 110000010 12466666678999999995 5333321 1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC-Chh-HHHHHHHHHHHHHHhhCCCeEEEEeCC
Q 013777 232 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-ALD-TLKSYYKAGYDAVRKYTSTAYVIMSNR 309 (436)
Q Consensus 232 g~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~-~~~-~~~~~~~~~~~aIR~~~p~~~Viv~~~ 309 (436)
-.+| ....-.++..++.|-.+|...+.-+-+..++ |..... +.. .=..-+.+++.+.|-..|+.-|.++++
T Consensus 227 -----lge~-~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~-P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g 299 (371)
T PRK09240 227 -----LSDW-RTDALMTALHLRYLQRKYWQAEYSISFPRLR-PCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTR 299 (371)
T ss_pred -----CCcc-HHHHHHHHHHHHHHHHhCCCCceeeecCccc-cCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecC
Confidence 1111 1334445566777777887766433222222 221100 101 112234577888899999999999864
No 247
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=37.06 E-value=62 Score=28.64 Aligned_cols=37 Identities=30% Similarity=0.664 Sum_probs=21.1
Q ss_pred ccEEEEecC---CCceEEEcCCCCCCcceEEEEEec-----CCeEEEE
Q 013777 6 QKYIAAESG---GGTIVVANRTSASGWETFRLWRVN-----ETFYNFR 45 (436)
Q Consensus 6 ~~~~~a~~~---g~~~~~anr~~~~~we~f~~~~~~-----~~~~~~~ 45 (436)
=|||+.|+| .|+.++| +...|+.|+++=++ ...|..|
T Consensus 22 TrYL~v~~~~~~~g~~f~a---s~~~W~~F~I~lvd~~~~~~~~~~~~ 66 (158)
T PF09270_consen 22 TRYLHVENGASGHGPRFVA---SSTQWDPFTIHLVDDPRSNAEPFDVR 66 (158)
T ss_dssp EEEEEEETT------EEEE---ESS----EEEEEE-TT--SSSCEEEE
T ss_pred ceeeecCCCcccceeeeee---ccCcccceEEEEecCCccccCCCCCC
Confidence 389999986 5556666 45689999999993 3446655
No 248
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=36.51 E-value=3.8e+02 Score=26.38 Aligned_cols=59 Identities=7% Similarity=0.035 Sum_probs=34.2
Q ss_pred HHHHHHHhCC--CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 161 EDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 161 ~d~~~ia~~G--~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+.++.+++.| +.+|=|-+.|+.-.. -..-.++...+.-...+|+.++++|++|++.+|.
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~~~-~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P 88 (319)
T cd06591 28 DVAKEYRKRGIPLDVIVQDWFYWPKQG-WGEWKFDPERFPDPKAMVRELHEMNAELMISIWP 88 (319)
T ss_pred HHHHHHHHhCCCccEEEEechhhcCCC-ceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 3445556665 445544444431100 0011234445566789999999999999997764
No 249
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=35.74 E-value=43 Score=24.35 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcceEEeccCCceE
Q 013777 75 TFQIVRKDGDSSRVRLSASNGMFI 98 (436)
Q Consensus 75 ~f~~~~~~~~~~~v~i~~~nG~~l 98 (436)
.|+|.+..++..|+++++.||--+
T Consensus 4 kfei~kdk~Ge~rfrlkA~N~eiI 27 (59)
T COG3422 4 KFEIYKDKAGEYRFRLKAANGEII 27 (59)
T ss_pred eEEEEEcCCCcEEEEEEccCccEE
Confidence 699999998889999999998776
No 250
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=35.54 E-value=85 Score=30.12 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=38.6
Q ss_pred CHHHHHHHHhCC----CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 159 TDEDFKFLSSNG----INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 159 te~d~~~ia~~G----~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
.+++++...+.| +..|||.++-........-..-.+..++.+..+++.|+++|++|.+.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 478899998888 99999955321110000000111346788889999999999998854
No 251
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.47 E-value=69 Score=32.05 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~--~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
-++++.++.|++.|++.|.|.+.-. ++...... ..+.++.+-+.++.++++|+.|.|..-
T Consensus 92 ll~~e~~~~L~~~g~~~v~iSldg~---~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v 153 (358)
T TIGR02109 92 GLTEARLDALADAGLDHVQLSFQGV---DEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV 153 (358)
T ss_pred cCCHHHHHHHHhCCCCEEEEeCcCC---CHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE
Confidence 4688999999999999999977421 11000011 124677888888999999998777553
No 252
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=35.46 E-value=50 Score=33.81 Aligned_cols=53 Identities=26% Similarity=0.353 Sum_probs=40.1
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+||...+.|.-++...++|++.+|| |...-| -.-|...++.++++|..|...+
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi---FDAlND-----------~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI---FDALND-----------VRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe---chhccc-----------hhHHHHHHHHHHhcCceeEEEE
Confidence 5787777788888889999999998 221111 2458889999999999876654
No 253
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.24 E-value=1.2e+02 Score=29.04 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
+-.++...+.|.+.|=|-... . ..+.|.++++.|+++||.+++|+|..
T Consensus 123 ~~qi~~a~~~GAD~VlLi~~~-----------l---~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 123 PYQIYEARAAGADAILLIVAA-----------L---DDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHHHcCCCEEEEEecc-----------C---CHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 445666667777777663311 0 12579999999999999999999974
No 254
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=34.87 E-value=51 Score=34.64 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=32.0
Q ss_pred cCC-CeEEeecccccCCCC---C------cCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 368 SNG-PLTFVGEWTCEWNVK---D------ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 368 ~~~-p~v~vGEwg~~~~~~---~------~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
.+. ||++|.|.|...... + ...+.++++++..+++.++ .-.|+++|++-.
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D 426 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMD 426 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 444 579999999753210 1 1123456667777766654 357999999976
No 255
>PLN02998 beta-glucosidase
Probab=34.83 E-value=35 Score=36.18 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=33.0
Q ss_pred hcCCCeEEeecccccCCCCC-----cCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 367 TSNGPLTFVGEWTCEWNVKD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 367 ~~~~p~v~vGEwg~~~~~~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
+.+.||++|.|-|......+ ...+.++++++....+.++ .-.|++.|++-.
T Consensus 389 rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~D 446 (497)
T PLN02998 389 TYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMD 446 (497)
T ss_pred HcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 34566799999997542111 1223456667766666654 457999999976
No 256
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.26 E-value=1.5e+02 Score=28.59 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
.+..+.++++|+..+|.-. +.+...+..|.+-..+.|..+.+.|++.||.++-+.|..
T Consensus 44 ~~~A~~lk~~g~~~~r~~~----~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGA----FKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHcCCCEEEEee----ecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 4557788999999999843 222222233433246667777778999999999999965
No 257
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=34.24 E-value=1.3e+02 Score=34.18 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEEcC-CCCCCCCCCCCCCC--CCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEe
Q 013777 194 GGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEHSAT--RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIEL 270 (436)
Q Consensus 194 ~~~l~~ld~~v~~a~~~Gi~VilDlH-~~pg~qng~~~sg~--~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL 270 (436)
...++.|..+|+.+++.||+||--+. ..|+.. .+|. +.|.. .......++.++.|.+.| |+++ |
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~----~t~~fg~~g~~---rs~a~~~~~~~~~~~~~y---~~f~---~ 870 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFPQSPGYK----NTGSFGRYGPR---RSIAKKIIDSFKKMEKTY---PHFI---L 870 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCCCCCcc----ccCcccccCcc---hhhHHHHHHHHHHHHhhC---CceE---E
Confidence 45689999999999999999998765 233322 1221 11100 123334445555555555 5544 7
Q ss_pred ecCCCC
Q 013777 271 INEPLA 276 (436)
Q Consensus 271 ~NEP~~ 276 (436)
++|-..
T Consensus 871 ~denk~ 876 (912)
T TIGR02171 871 FDENKD 876 (912)
T ss_pred EecCcC
Confidence 788653
No 258
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=34.06 E-value=32 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV 214 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~V 214 (436)
|+++||+.|++.||.+|== . . |+..++ ..-..+..-+.|+++||.-
T Consensus 15 ~~~~d~~~la~~GfktVIn-l-----R-pd~E~~----~qp~~~~~~~~a~~~Gl~y 60 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVIN-L-----R-PDGEEP----GQPSSAEEAAAAEALGLQY 60 (110)
T ss_dssp --HHHHHHHHHCT--EEEE-------S--TTSTT----T-T-HHCHHHHHHHCT-EE
T ss_pred CCHHHHHHHHHCCCcEEEE-C-----C-CCCCCC----CCCCHHHHHHHHHHcCCeE
Confidence 6799999999999998832 1 1 111011 1122445567899999864
No 259
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=34.01 E-value=56 Score=32.06 Aligned_cols=60 Identities=25% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCC-CCCCc---c--chHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFV---G--GSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~-~~~~~---~--~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
++.|+.|++.|+|++-|-+--....-..+ ..++. . .-+.-+..+|+.|++.|||+|--.-
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiV 145 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARIV 145 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEEE
Confidence 57799999999999999764221110000 01111 1 1345577899999999999987443
No 260
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=33.97 E-value=2.1e+02 Score=23.64 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=32.6
Q ss_pred CCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCCChh
Q 013777 261 NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK 316 (436)
Q Consensus 261 ~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~ 316 (436)
..|.++++..+..- . ..+.++.+.||+..|+.+|++++...+..+.
T Consensus 38 ~~pdiv~~S~~~~~---------~-~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~ 83 (127)
T cd02068 38 LKPDVVGISLMTSA---------I-YEALELAKIAKEVLPNVIVVVGGPHATFFPE 83 (127)
T ss_pred cCCCEEEEeecccc---------H-HHHHHHHHHHHHHCCCCEEEECCcchhhCHH
Confidence 67899999875432 1 1567788899999999999998654333333
No 261
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=33.73 E-value=72 Score=30.61 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=38.4
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
|++-.+...+.+|.++|=|.+.. + + -+.|.++++.|.+.||-|++..|..
T Consensus 117 iD~yQI~~Ar~~GADavLLI~~~--L-~-----------~~~l~el~~~A~~LGm~~LVEVh~~ 166 (254)
T COG0134 117 IDPYQIYEARAAGADAVLLIVAA--L-D-----------DEQLEELVDRAHELGMEVLVEVHNE 166 (254)
T ss_pred CCHHHHHHHHHcCcccHHHHHHh--c-C-----------HHHHHHHHHHHHHcCCeeEEEECCH
Confidence 46667777788888888776531 1 1 1468899999999999999999963
No 262
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.64 E-value=4.3e+02 Score=27.34 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=34.7
Q ss_pred hcCCHHHHHHHHhC--CCCEEEecCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEE
Q 013777 156 SYITDEDFKFLSSN--GINAVRIPVGWWIANDPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVI 215 (436)
Q Consensus 156 ~~ite~d~~~ia~~--G~N~VRipv~~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~Gi~Vi 215 (436)
..++++.++.|++. |++.|-||+- .+.+.. -..++ ..+.+.++++.++++|..+.
T Consensus 230 ~~i~~ell~~l~~~~~g~~~l~igvQ--Sgs~~vLk~m~R~~---~~~~~~~~v~~lr~~~~~i~ 289 (440)
T PRK14334 230 MNFTDDVIAAMAETPAVCEYIHLPVQ--SGSDRVLRRMAREY---RREKYLERIAEIREALPDVV 289 (440)
T ss_pred ccCCHHHHHHHHhcCcCCCeEEeccc--cCCHHHHHHhCCCC---CHHHHHHHHHHHHHhCCCcE
Confidence 34789999999985 5898888872 111100 00112 34667788888999875543
No 263
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=33.55 E-value=4.6e+02 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCC
Q 013777 197 SKVLDNAFDWAEKYGVKVIVDLHAAP 222 (436)
Q Consensus 197 l~~ld~~v~~a~~~Gi~VilDlH~~p 222 (436)
-..|..-|+.|++.|++|+|.+=...
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIGG~~ 83 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIGGAG 83 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEccCCC
Confidence 35788899999999999999986553
No 264
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=32.79 E-value=40 Score=35.41 Aligned_cols=47 Identities=9% Similarity=0.119 Sum_probs=30.5
Q ss_pred CeEEeecccccCCC---CC-----cCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 371 PLTFVGEWTCEWNV---KD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 371 p~v~vGEwg~~~~~---~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
||++|.|.|..... .+ ...+.+++++...+++.++ .-.|+++|++-.
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D 424 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMD 424 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 57999999986421 11 1123456667666666543 357999999976
No 265
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.68 E-value=71 Score=29.82 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=38.8
Q ss_pred CHHHHHH----HHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 159 TDEDFKF----LSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 159 te~d~~~----ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.+++++. +++.|+..||+.++-....-...-..-.+..++.+.++++.|+++|+.|-+.+-
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 4566666 346999999997653211000000011234688899999999999999966653
No 266
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=32.54 E-value=1.4e+02 Score=24.12 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHhCC-CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 013777 157 YITDEDFKFLSSNG-INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 216 (436)
Q Consensus 157 ~ite~d~~~ia~~G-~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vil 216 (436)
..+..||+.+-+.| ++.|++-+.. -+.+....++.+.|+++||.+++
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 34677888876654 7888874432 24678899999999999999876
No 267
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=32.43 E-value=4.5e+02 Score=26.83 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--CceeEEEee-
Q 013777 195 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--PSLAAIELI- 271 (436)
Q Consensus 195 ~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~--~~v~g~eL~- 271 (436)
..++.+.++|+.|++.|-..|+ +|. |. .+.+.+... . .....+.+++.++.|++.-++. ...+++|.+
T Consensus 112 ~ai~~~kraId~A~eLGa~~v~-v~~--G~-~g~~~~~~~----d-~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 112 YALRKVLRNMDLGAELGAETYV-VWG--GR-EGAEYDGAK----D-VRAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-Ecc--CC-CCCcCcccc----C-HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4688899999999999998653 332 21 111111000 0 0245567778888888766553 345778887
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHhhC
Q 013777 272 NEPLAPGVALDTLKSYYKAGYDAVRKYT 299 (436)
Q Consensus 272 NEP~~~~~~~~~~~~~~~~~~~aIR~~~ 299 (436)
|||.. ..+..-..++...|++++
T Consensus 183 ~~~~~-----~~ll~T~~~al~li~~v~ 205 (382)
T TIGR02631 183 NEPRG-----DILLPTVGHALAFIETLE 205 (382)
T ss_pred CCCCc-----ceecCCHHHHHHHHHHcC
Confidence 67753 112233445566667766
No 268
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=32.10 E-value=2.9e+02 Score=27.90 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=71.2
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC----ccchHHHHHHHHHHHHHcCCE-EEEEcCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF----VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~----~~~~l~~ld~~v~~a~~~Gi~-VilDlH~~pg~qng~~~s 231 (436)
.+|+++++.|+++|++.+-+-+ ... ++.-.... ....++..-+.++.|++.||. |=+++-. |
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~l--ET~-~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~--G-------- 225 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQ--ETY-NEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALL--G-------- 225 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEe--ecC-CHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEE--e--------
Confidence 3789999999999999655533 211 11000000 012455556678899999986 4333221 1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeec---CCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 232 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN---EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 232 g~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~N---EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
-..|. ...-.+...++.|-.+|...+.-+-+-.++ .|..+. ...=..-+.+.+.++|-..|+.-|.+++
T Consensus 226 -----l~e~~-~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~--~~l~~~~~~~~i~~~R~~~P~~~i~~s~ 297 (366)
T TIGR02351 226 -----LDDWR-TDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPK--VIVTDRELVQIICAYRLFDPFVEISLST 297 (366)
T ss_pred -----CchhH-HHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCC--CcCCHHHHHHHHHHHHHhCcccccEEec
Confidence 11111 222334456667777777643222121111 122111 1111234567788999999999999986
Q ss_pred CC
Q 013777 309 RL 310 (436)
Q Consensus 309 ~~ 310 (436)
+-
T Consensus 298 g~ 299 (366)
T TIGR02351 298 RE 299 (366)
T ss_pred CC
Confidence 43
No 269
>PRK00865 glutamate racemase; Provisional
Probab=32.05 E-value=1.9e+02 Score=27.69 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeC
Q 013777 249 VAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 249 ~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
+.+++.|.+++.+..-|..-|..|=|.. .-+.+.+..+..++++.+.+.+.+.+||-++
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYG-EKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4688999999999999999999999996 4567899999999999999988888887765
No 270
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=31.42 E-value=49 Score=23.33 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEeC
Q 013777 287 YYKAGYDAVRKYTSTAYVIMSN 308 (436)
Q Consensus 287 ~~~~~~~aIR~~~p~~~Viv~~ 308 (436)
-+.++.+.|++.||++.|++.+
T Consensus 28 e~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 28 ELPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHHhCCCEEEEEEc
Confidence 3567889999999999999874
No 271
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=31.35 E-value=5.3e+02 Score=25.58 Aligned_cols=59 Identities=7% Similarity=-0.069 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCC--CEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~--N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
++.++.+++.|| .+|=|-+.|+. ....-.+++..+.-...+|+.+++.|++|++-+|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~ 87 (339)
T cd06603 27 KEVDAGFDEHDIPYDVIWLDIEHTD---GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPH 87 (339)
T ss_pred HHHHHHHHHcCCCceEEEEChHHhC---CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 344556666664 34444444431 111112344556667889999999999999998844
No 272
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=31.21 E-value=1.5e+02 Score=27.24 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHc-CCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY-GVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~-Gi~VilDlH~~ 221 (436)
+..-+.|.+.|++++.--- ...+..|...+-.-.+.+-+..+++ +|.++||+|..
T Consensus 37 ~~L~~~Le~~Gi~vihd~t-------~~~~~~y~~sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 37 DRLAKELEEKGIGVIHDKT-------VHDGLNYEQSYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHHHHHCCCeEEEeCC-------ccCCccHHHHHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 4555677888999887632 1111123333333333344455556 68999999975
No 273
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=30.94 E-value=1.7e+02 Score=32.31 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=62.2
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCcc-ccccCCCCCCC---Ccc----chHHHHHHHHHHHHHcCCEEEEEcCCCCCC---
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKP---FVG----GSSKVLDNAFDWAEKYGVKVIVDLHAAPGS--- 224 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~-~~~~~~~~~~~---~~~----~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~--- 224 (436)
+|..|+|+... +.||+-.-||+.. |+-++-..... |+. .-.+.|+++- ++.+.|-+|||.|.-..+
T Consensus 367 NY~DE~DV~~V-d~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa--~kgRklV~IvDPHIKkD~~Y~ 443 (915)
T KOG1066|consen 367 NYNDEEDVLTV-DQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLA--SKGRKLVTIVDPHIKKDDGYF 443 (915)
T ss_pred cccchhhhhhh-hcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHH--hcCCceEEEeCcccccCCCeE
Confidence 56788888765 5699999999973 54333222222 222 2234444432 346678999999964321
Q ss_pred --------------CCCCCCCCCC-CCCCCCChhHHHHHHHHHHHHH--HHhCCC-CceeEEEeecCCCC
Q 013777 225 --------------QNGNEHSATR-DGFQEWGDSNVADTVAVIDFLA--ARYANR-PSLAAIELINEPLA 276 (436)
Q Consensus 225 --------------qng~~~sg~~-~~~~~w~~~~~~~~~~~~~~lA--~ry~~~-~~v~g~eL~NEP~~ 276 (436)
.+|.+.-|.| .|...|.+-.-....++|...- .+|... +++..|.=||||.-
T Consensus 444 v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fafd~y~g~t~nl~iWNDMNEPSV 513 (915)
T KOG1066|consen 444 VHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFAFDRYEGSTPNLFIWNDMNEPSV 513 (915)
T ss_pred EhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcccccccCCCCceEEeccCCCccc
Confidence 1111211211 2233332111122334444333 356554 46888999999974
No 274
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=30.65 E-value=95 Score=31.11 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCC
Q 013777 197 SKVLDNAFDWAEKYGVKVIVDLHAAPGS 224 (436)
Q Consensus 197 l~~ld~~v~~a~~~Gi~VilDlH~~pg~ 224 (436)
...++.+.++|+++||.||-|.-.+.|+
T Consensus 126 ~~d~~~i~~~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 126 PADMDAIRAIARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp ---HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred cccHHHHHHHHHHcCCcEEEccccccCc
Confidence 3469999999999999999999877775
No 275
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=30.47 E-value=1.7e+02 Score=28.98 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCc--cchHHHHHHHHHHHHHcCCE-EEEEcCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVK-VIVDLHAAP 222 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~--~~~l~~ld~~v~~a~~~Gi~-VilDlH~~p 222 (436)
++.++.+++.|++.|.|.+.- .++.....+. .+.++.+-+.++.+.+.|+. |-|.....+
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~---~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~ 164 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDS---LDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMR 164 (334)
T ss_pred HHHHHHHHHcCCCeEEEeccc---CCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 456888999999999987742 1111111122 23788888999999999997 777665444
No 276
>PRK14047 putative methyltransferase; Provisional
Probab=30.36 E-value=1.4e+02 Score=29.35 Aligned_cols=65 Identities=14% Similarity=0.349 Sum_probs=48.3
Q ss_pred HhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHH--------HHHHHHHcCC-EEEEEcCCCC
Q 013777 152 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGV-KVIVDLHAAP 222 (436)
Q Consensus 152 ~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~--------~v~~a~~~Gi-~VilDlH~~p 222 (436)
+-=+--++++.++.|++.++++.=| +..+|.. |-.++.++.|.+ ++..|.+.|| +.+||.-..|
T Consensus 128 NSIn~s~~~~EieaL~~sdi~aaIi-----LaFn~~d--~sv~gr~~~le~gg~~~~~gll~~ae~~GI~~~liD~avtp 200 (310)
T PRK14047 128 NSINMSIHESEIEALKQSDIDSSIV-----LGFNAMD--SSLKGRMEMLETGGGLLEKGLLEIADDCGITNILIDPSITP 200 (310)
T ss_pred hhcCccCCHHHHHHHHhcCCCeEEE-----EecCCCC--CCHHHHHHHHHhcCccccccHHHHHHHcCCCceeecccccC
Confidence 3334457899999999999998876 2334433 344677888864 6899999999 4888988876
Q ss_pred C
Q 013777 223 G 223 (436)
Q Consensus 223 g 223 (436)
-
T Consensus 201 l 201 (310)
T PRK14047 201 M 201 (310)
T ss_pred C
Confidence 4
No 277
>PRK10673 acyl-CoA esterase; Provisional
Probab=30.18 E-value=1.4e+02 Score=27.31 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 013777 252 IDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 311 (436)
Q Consensus 252 ~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 311 (436)
|..++.++.+.-.|+.+|+-.==.......-.+..+.+++...|...+...+++++-.+|
T Consensus 32 ~~~~~~~l~~~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~G 91 (255)
T PRK10673 32 LGVLARDLVNDHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFIGHSMG 91 (255)
T ss_pred HHHHHHHHhhCCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEECHH
Confidence 444444444445788888854100001112345667777777888777666777775454
No 278
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.58 E-value=1.5e+02 Score=29.28 Aligned_cols=77 Identities=22% Similarity=0.435 Sum_probs=53.5
Q ss_pred hhccCcChhhHHHHHhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHH--------HHHHHHH
Q 013777 138 TNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEK 209 (436)
Q Consensus 138 ~~~~G~~~a~~~~~~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~--------~v~~a~~ 209 (436)
+...|. +.+.+-+--+--++++.++.|++.++++.=| +..+|.. |-.++.++.|.+ ++..|.+
T Consensus 116 ~~E~Gl--adR~IYNSIn~s~~~eEieaL~esdi~aaIi-----LaFnp~d--psv~gr~~~l~~gg~~~~~gll~~ae~ 186 (314)
T TIGR01114 116 ATEVGL--ADRAIYNSINASIEEEEIQVLKESDLSAAIV-----LAFNPMD--PTVEGKIDILEVGGGTSDKGMLEIAEE 186 (314)
T ss_pred hhhhch--HHHHHHhhcCccCCHHHHHHHHhcCCCeEEE-----EecCCCC--CCHHHHHHHHHhcCccccccHHHHHHH
Confidence 344443 2333333334557899999999999998876 3344433 445678888864 6899999
Q ss_pred cCC-EEEEEcCCCCC
Q 013777 210 YGV-KVIVDLHAAPG 223 (436)
Q Consensus 210 ~Gi-~VilDlH~~pg 223 (436)
.|| +.+||.-..|-
T Consensus 187 ~GI~~pliD~avtpl 201 (314)
T TIGR01114 187 CGIKYPLIDVAVTPL 201 (314)
T ss_pred cCCCceeecccccCC
Confidence 999 58889988764
No 279
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=29.47 E-value=3.8e+02 Score=28.27 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCHHHHHHHHhCCCCEEEecCc-cc----cccCCCCCCCCccchHHHHHHHHHHHHHcCCE-EEEEcCCCCCCCCCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVG-WW----IANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPGSQNGNEHS 231 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~-~~----~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~-VilDlH~~pg~qng~~~s 231 (436)
+|+++++.|++.|++.+=+-.- |- ....| .++ ...++.=-+.++.|.+.||. |=+..
T Consensus 178 lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp--~g~--k~~y~~Rl~t~~rA~~aGi~~Vg~G~------------- 240 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHP--SGP--KSDYDWRLTAMDRAMEAGIDDVGIGV------------- 240 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCC--CCC--CCCHHHHHHHHHHHHHcCCCeeCeEE-------------
Confidence 6899999999999997765221 10 00011 111 12344445567888888886 42221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-C-Chh--HHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 232 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-V-ALD--TLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 232 g~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~-~-~~~--~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
.-|-..|. ...-..+...+.|-++|+-.|..+.+-.++ |.... . +.. .=..-+.+++.++|=..|..-|+++
T Consensus 241 --L~GLge~~-~E~~~l~~hl~~L~~~~gvgp~tIsvprl~-P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lS 316 (469)
T PRK09613 241 --LFGLYDYK-FEVLGLLMHAEHLEERFGVGPHTISVPRLR-PADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILS 316 (469)
T ss_pred --EEcCCCCH-HHHHHHHHHHHHHHHhhCCCCcccccccee-cCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceee
Confidence 11222222 112223455677888885445444343332 33211 1 111 1123456788999999999989888
Q ss_pred CC
Q 013777 308 NR 309 (436)
Q Consensus 308 ~~ 309 (436)
..
T Consensus 317 tR 318 (469)
T PRK09613 317 TR 318 (469)
T ss_pred cC
Confidence 53
No 280
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=29.46 E-value=2.8e+02 Score=21.74 Aligned_cols=74 Identities=7% Similarity=0.127 Sum_probs=37.5
Q ss_pred cccEEEEecC-CCceE-EEcCCCCCCcceEEEEEecCCeEEEEEeCCceEEeecCCCCceEEEEecCC-CCCceEEEEEc
Q 013777 5 FQKYIAAESG-GGTIV-VANRTSASGWETFRLWRVNETFYNFRVNNKQFIGLENQGQGNGLVAVSNTA-GYSETFQIVRK 81 (436)
Q Consensus 5 ~~~~~~a~~~-g~~~~-~anr~~~~~we~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~-~~~e~f~~~~~ 81 (436)
.|+.|.+..+ .++.| +......+.-..|.+.+ .+.+.++. .+.-+.+.+...+..|+...-.. ...+.|++...
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~--~g~~~~~~-~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~ 85 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS--DGTIRIKS-SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKD 85 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC--CCeEEEcC-CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCC
Confidence 5677766654 23344 34333332344444444 66777765 45544443311123455555444 66778877643
No 281
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=29.13 E-value=1.5e+02 Score=28.22 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=37.3
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
..+|++...+.|+..|||.++-- ....+.++++.|++.|+.|.+.+-
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46889999999999999955321 124678899999999999988773
No 282
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=28.85 E-value=5e+02 Score=24.43 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=81.5
Q ss_pred eEEEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEEcC--CCCcceEEeccC--CceEEEeeCeEEEcCCCCCCCC
Q 013777 41 FYNFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKD--GDSSRVRLSASN--GMFIQAISETRLTADYGSSSWD 116 (436)
Q Consensus 41 ~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~--~~~~~v~i~~~n--G~~lq~~~~~~v~a~~~~~~W~ 116 (436)
.+.|.+..|.-|++-+- ++ +|...+|.++.-= -+.++|.|...+ ...++.. |. -+-+.+
T Consensus 22 ~Vsl~v~~GEiVGLLGP--NG--------AGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R------Ar-lGigYL 84 (243)
T COG1137 22 DVSLEVNSGEIVGLLGP--NG--------AGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR------AR-LGIGYL 84 (243)
T ss_pred eeeEEEcCCcEEEEECC--CC--------CCceeEEEEEEEEEecCCceEEECCcccccCChHHH------hh-cCcccc
Confidence 37888889999999732 33 6888999865420 011233333322 1111100 00 013566
Q ss_pred CCCCcccccccccccccchhhhhccCcChhhHHHHHhh-hhcCC--HHHH-HHHHhCCCCEEEecCcccccc--------
Q 013777 117 DSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHW-DSYIT--DEDF-KFLSSNGINAVRIPVGWWIAN-------- 184 (436)
Q Consensus 117 ~~~ps~F~~~~~~~~~~e~~~~~~~G~~~a~~~~~~h~-~~~it--e~d~-~~ia~~G~N~VRipv~~~~~~-------- 184 (436)
-.+||+|..-.+. ++...+++-+. +.... +..+ ..|.+..+.++|=.-++.+-.
T Consensus 85 pQE~SIFr~LtV~--------------dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 85 PQEASIFRKLTVE--------------DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred cccchHhhcCcHH--------------HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHH
Confidence 7889999653321 11122222222 11111 1112 446778888888655443211
Q ss_pred ------CCC---CCCCCc---cchHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 013777 185 ------DPT---PPKPFV---GGSSKVLDNAFDWAEKYGVKVIVDLHAAP 222 (436)
Q Consensus 185 ------~~~---~~~~~~---~~~l~~ld~~v~~a~~~Gi~VilDlH~~p 222 (436)
+|. -.+||. +=....+++++...+++||.|+|.-|...
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 110 013542 34778899999999999999999999764
No 283
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.68 E-value=1.6e+02 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
.-+.+..+|+.|+++||.||..+-
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID 118 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEID 118 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccC
Confidence 468899999999999999999764
No 284
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=28.67 E-value=4.5e+02 Score=27.05 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHhCC--CCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHc--CCEEEEEc
Q 013777 157 YITDEDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKY--GVKVIVDL 218 (436)
Q Consensus 157 ~ite~d~~~ia~~G--~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~--Gi~VilDl 218 (436)
.++++.++.|++.| +.+|-||+- ...+..- .... ....+.+.++++.++++ ++.+..|+
T Consensus 229 ~~~~ell~~~~~~~~~~~~l~iglE--S~s~~vL-k~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~ 292 (430)
T TIGR01125 229 ELTDDVIDLMAEGPKVLPYLDIPLQ--HASDRIL-KLMRRPGSGEQQLDFIERLREKCPDAVLRTTF 292 (430)
T ss_pred cCCHHHHHHHhhCCcccCceEeCCC--CCCHHHH-hhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEE
Confidence 37889999999885 788877762 1111000 0011 12457777888899888 55554453
No 285
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.62 E-value=1.7e+02 Score=26.49 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 162 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 162 d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
+++.++++|.+.|=++.. .+ -..+.++++.|+++|++++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~-----~~----------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV-----AD----------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEecc-----CC----------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 588889999998887541 01 134788999999999999999876
No 286
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=28.54 E-value=84 Score=29.00 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred hhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccc--hHHHHHHHHHHHHHcC
Q 013777 153 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGG--SSKVLDNAFDWAEKYG 211 (436)
Q Consensus 153 h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~--~l~~ld~~v~~a~~~G 211 (436)
+.++-+.+.-.+.+.+.|+-++|+-+ .- . ....++|+.+ -++-...+++|++.+.
T Consensus 43 tm~nkvv~~la~~l~~~G~atlRfNf--Rg-V-G~S~G~fD~GiGE~~Da~aaldW~~~~h 99 (210)
T COG2945 43 TMNNKVVQTLARALVKRGFATLRFNF--RG-V-GRSQGEFDNGIGELEDAAAALDWLQARH 99 (210)
T ss_pred ccCCHHHHHHHHHHHhCCceEEeecc--cc-c-ccccCcccCCcchHHHHHHHHHHHHhhC
Confidence 44444556778889999999999855 21 1 1223466653 5777778999998764
No 287
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=28.44 E-value=2.8e+02 Score=23.97 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=31.3
Q ss_pred CCceeEEEe-ecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEe
Q 013777 262 RPSLAAIEL-INEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 307 (436)
Q Consensus 262 ~~~v~g~eL-~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~ 307 (436)
.|.++.+.+ .|+-.. ..+.+.+.+.++++++.+|+..|+..|++.
T Consensus 50 ~p~~vvi~~G~ND~~~-~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 50 QPRRVVLYAGDNDLAS-GRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred CCCEEEEEEecCcccC-CCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 454443433 676432 456888999999999999999887655553
No 288
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.37 E-value=1.4e+02 Score=27.73 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=29.1
Q ss_pred HHHHHHHcCC----EEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH-HHHhCCCCceeEEEee
Q 013777 203 AFDWAEKYGV----KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFL-AARYANRPSLAAIELI 271 (436)
Q Consensus 203 ~v~~a~~~Gi----~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~l-A~ry~~~~~v~g~eL~ 271 (436)
+++..++++| +++|||-++||+ |.++ +++-+....|+|+|+.
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGg---------------------------WsQva~~~~~~~~~ivavDi~ 79 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGG---------------------------WSQVAAKKLGAGGKIVAVDIL 79 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCc---------------------------HHHHHHHHhCCCCcEEEEECc
Confidence 4455566655 799999999984 3444 4455555669999975
No 289
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.19 E-value=1.1e+02 Score=31.85 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEc
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
+.+++++...+.|+..|||..+-- ....+..+++.|+++|+.|.+.+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~ln--------------d~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALN--------------DVRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC--------------cHHHHHHHHHHHHHcCCeEEEEE
Confidence 457889999999999999954311 11347789999999999877654
No 290
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=28.19 E-value=84 Score=32.97 Aligned_cols=58 Identities=19% Similarity=0.492 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC--hhHHHHHHHHHHHHHHHhCCCCc
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG--DSNVADTVAVIDFLAARYANRPS 264 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~--~~~~~~~~~~~~~lA~ry~~~~~ 264 (436)
..+.+|.+++.|++.||+=||-|-+.|-- +...|. ...-+.++++++.+-++|.|+=.
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~-----------g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~ 149 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPI-----------GQDKWVEEEGGFRYAVDLVRYIRSKYGDYFC 149 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCC-----------CccccccccCCchhHHHHHHHHHHHhCCeEE
Confidence 47889999999999999999999987532 111232 12245688999999999998743
No 291
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=27.60 E-value=1.5e+02 Score=29.18 Aligned_cols=56 Identities=13% Similarity=-0.031 Sum_probs=35.2
Q ss_pred HHHHHhCCCCEEEecCccc----------cccCCCCCCCCcc-chHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 163 FKFLSSNGINAVRIPVGWW----------IANDPTPPKPFVG-GSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 163 ~~~ia~~G~N~VRipv~~~----------~~~~~~~~~~~~~-~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
...++.+|++.+.+|+.-- .+..|.+ |--. -..+.+.+++++|+++|+.||+|=.-
T Consensus 100 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~N--PTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y 166 (330)
T PRK05664 100 AHAWRRAGHQVRELDEAEVEAALDSLDVLVVVNPNN--PTGRRFDPARLLAWHARLAARGGWLVVDEAF 166 (330)
T ss_pred HHHHHHcCCeEEEechhhHhhhhcCCCEEEEeCCcC--CCCCccCHHHHHHHHHHHHhcCCEEEEECCc
Confidence 3445567777777776210 0122322 2111 15778999999999999999998653
No 292
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=27.50 E-value=95 Score=27.45 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcC-CEEEEEc
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDL 218 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~-~~~~l~~ld~~v~~a~~~G-i~VilDl 218 (436)
.++++.++.|++.|+..|.|.+.-. ++...... ....++.+.+.++.+.++| +.|.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSG---SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccC---CHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 4678999999999999888866421 11000000 1235688889999999999 6554433
No 293
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=27.15 E-value=85 Score=33.08 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=30.2
Q ss_pred CCeEEeecccccCCC----CC-----cCHHHHHHHHHHHHHHHcc--CCCcEEEEceec
Q 013777 370 GPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 417 (436)
Q Consensus 370 ~p~v~vGEwg~~~~~----~~-----~~~~~~~~~~~~q~~~~~~--~~~Gw~~W~~k~ 417 (436)
+.|++|.|.|..... .+ ...+.+++++++.+++.++ .-.|+++|++-.
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~D 423 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCID 423 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccc
Confidence 445999999976321 11 1122345666666666544 457999999976
No 294
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.14 E-value=1.8e+02 Score=27.64 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
++-++..+++||++|=|.-+.-.+ ..+...++|+.++++|++|+-.+..
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i------------~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEI------------SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCC------------CHHHHHHHHHHHHhCCCeEeccccc
Confidence 666789999999999996543111 2366788999999999999987653
No 295
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=27.04 E-value=2.1e+02 Score=29.00 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
.+..+.+++.|+..+|=- . +.+...|..|.+-.++.+..+.+.|++.||.++-+.|..
T Consensus 135 ~~~A~~lk~~g~~~~r~~--~--~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~ 192 (360)
T PRK12595 135 EAVAKALKAKGLKLLRGG--A--FKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNP 192 (360)
T ss_pred HHHHHHHHHcCCcEEEcc--c--cCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 455777889999999942 2 223333333444467888888889999999999999964
No 296
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=26.79 E-value=1.9e+02 Score=28.38 Aligned_cols=68 Identities=29% Similarity=0.479 Sum_probs=47.1
Q ss_pred HHHHhhhhcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHH--------HHHHHHHcCC-EEEEEcC
Q 013777 149 VLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGV-KVIVDLH 219 (436)
Q Consensus 149 ~~~~h~~~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~--------~v~~a~~~Gi-~VilDlH 219 (436)
.+-+--+-.++++.++.|++.++++.=| +.++|.. |-.++.++.|.+ +++.|++.|| +++||.-
T Consensus 120 ~IYNSIn~~~~~~EieaLkes~i~aaIv-----LaFn~~d--~s~~gr~~~le~~~~~~~kgll~~a~e~GI~~~LvD~~ 192 (296)
T PF02007_consen 120 AIYNSINMSIEDEEIEALKESDIDAAIV-----LAFNPMD--PSVEGRIEMLENGGGGQDKGLLDIAEECGIENPLVDTA 192 (296)
T ss_pred hhhhcCCCCCCHHHHHHHHhcCCCEEEE-----EecCCCC--CChhhhHHHHhccCcccccchHHHHHHcCCcceeeccc
Confidence 3333334467899999999999998876 2334433 334556666633 6789999999 5888988
Q ss_pred CCCC
Q 013777 220 AAPG 223 (436)
Q Consensus 220 ~~pg 223 (436)
..|-
T Consensus 193 v~pl 196 (296)
T PF02007_consen 193 VTPL 196 (296)
T ss_pred ccCC
Confidence 7764
No 297
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=26.31 E-value=1.2e+02 Score=28.12 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC---hhHHHHHHHHHHHHHHHhC-CCCceeEEEee
Q 013777 197 SKVLDNAFDWAEK-YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG---DSNVADTVAVIDFLAARYA-NRPSLAAIELI 271 (436)
Q Consensus 197 l~~ld~~v~~a~~-~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~---~~~~~~~~~~~~~lA~ry~-~~~~v~g~eL~ 271 (436)
-+.|.++++...+ +|--++||+|.++....+.... ..+.|. ........++.+.+.+.++ ..---+ -.
T Consensus 116 h~~l~~~l~~~~~~~g~~illd~HS~~~~~~~~~~~----~~~~~~lG~~~~~s~~~~l~~~~~~~l~~~~g~~v---~~ 188 (222)
T PF05013_consen 116 HRALAALLERLRARFGKVILLDCHSMPPVPPGREDD----PRPDIVLGTLHGPSCDPELVDALAEALEASDGYSV---RV 188 (222)
T ss_dssp HHHHHHHHHHHHHCCS-EEEEEEEEE-TCCCCCCT--------SECEECCTTTSS-HHHHHHHHHHCC-CTTS-E---EE
T ss_pred HHHHHHHHHHHHHhcCceEEEEeccCCCcccccccC----CCCCeEEEcCCCCCCCHHHHHHHHHHhhcccCcEE---ee
Confidence 4556666655544 6888899999987654332200 112222 0010112356666666666 332223 26
Q ss_pred cCCCC
Q 013777 272 NEPLA 276 (436)
Q Consensus 272 NEP~~ 276 (436)
|+|..
T Consensus 189 N~Py~ 193 (222)
T PF05013_consen 189 NEPYS 193 (222)
T ss_dssp TSS--
T ss_pred CCCCC
Confidence 99985
No 298
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=25.95 E-value=2.4e+02 Score=27.94 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCC-EEEEEc
Q 013777 161 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGV-KVIVDL 218 (436)
Q Consensus 161 ~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi-~VilDl 218 (436)
+.++.|++.|++.|.|.+.- .++....... .+.++.+-+.++.+.+.|+ .|-|..
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs---~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~ 161 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDT---LRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNA 161 (329)
T ss_pred HHHHHHHHcCCCeEEEEecc---CCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 46888999999999987742 1111111111 2468888888999999999 676654
No 299
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=25.94 E-value=3.2e+02 Score=22.98 Aligned_cols=54 Identities=4% Similarity=0.016 Sum_probs=41.3
Q ss_pred CCceEEeecCCCCceEEEEecCCCCCceEEEEEcCCCCcceEEecc-CCceEEEeeCeEE
Q 013777 48 NKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISETRL 106 (436)
Q Consensus 48 ~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~i~~~-nG~~lq~~~~~~v 106 (436)
++.|+.+.. ++.|.++++.....-.|++..-+ .+.|.|+.. .+.||..+...-+
T Consensus 7 ~~~~L~I~~---dG~V~Gt~~~~~~~s~l~~~s~~--~g~v~i~~v~s~~YLCmn~~G~l 61 (123)
T cd00058 7 TGFHLQILP---DGTVDGTRDDSSSYTILERIAVA--VGVVSIKGVASCRYLCMNKCGKL 61 (123)
T ss_pred CCeEEEEcC---CCcEecccCCCCCCceEEEEECC--CCEEEEEEcccceEEEECCCCCE
Confidence 478888875 45699998887788889888765 458999985 7999987755433
No 300
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=25.70 E-value=1.5e+02 Score=27.33 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH-HhCCCCceeEEEeec-CCC
Q 013777 213 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAA-RYANRPSLAAIELIN-EPL 275 (436)
Q Consensus 213 ~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~-ry~~~~~v~g~eL~N-EP~ 275 (436)
-.|||+-.+||+ |.++|. +-..+..|+|+||++ ||-
T Consensus 71 ~~VlD~G~APGs---------------------------WsQVavqr~~p~g~v~gVDllh~~p~ 108 (232)
T KOG4589|consen 71 DTVLDCGAAPGS---------------------------WSQVAVQRVNPNGMVLGVDLLHIEPP 108 (232)
T ss_pred CEEEEccCCCCh---------------------------HHHHHHHhhCCCceEEEEeeeeccCC
Confidence 368999998874 455554 333566899999998 443
No 301
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=25.63 E-value=1.7e+02 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
+.+..+...+..|.++|=|.+. .. .-+.|.++++.|.+.||-+++..|..
T Consensus 112 id~~QI~ea~~~GADavLLI~~---~L-----------~~~~l~~l~~~a~~lGle~LVEVh~~ 161 (247)
T PRK13957 112 LDEIQIREARAFGASAILLIVR---IL-----------TPSQIKSFLKHASSLGMDVLVEVHTE 161 (247)
T ss_pred CCHHHHHHHHHcCCCEEEeEHh---hC-----------CHHHHHHHHHHHHHcCCceEEEECCH
Confidence 4677778888888888855331 11 11468899999999999999999963
No 302
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=25.55 E-value=95 Score=32.72 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=33.2
Q ss_pred CCeEEeecccccCCC----CC-----cCHHHHHHHHHHHHHHH-cc--CCCcEEEEceecCCCCCC
Q 013777 370 GPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVY-GR--ATFGWAYWAHKCEANHWS 423 (436)
Q Consensus 370 ~p~v~vGEwg~~~~~----~~-----~~~~~~~~~~~~q~~~~-~~--~~~Gw~~W~~k~~~~~Ws 423 (436)
+.|++|.|-|..... .+ ...+.+++++++.+.+. ++ .-.|++.|++-. +-.|.
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~D-n~Ew~ 431 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCID-LVSAG 431 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccc-ccccc
Confidence 345999999976321 11 11234567777777776 33 467999999976 33454
No 303
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=25.46 E-value=96 Score=30.68 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHHHhCCCCEEEecCccccccCCC------CCC--------C-CccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 164 KFLSSNGINAVRIPVGWWIANDPT------PPK--------P-FVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 164 ~~ia~~G~N~VRipv~~~~~~~~~------~~~--------~-~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
+.++..|+..+++|+......++. .+. + ...+.+.-++++.+.|+++|+.+|+|--..
T Consensus 106 ~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~ 178 (353)
T TIGR03235 106 RALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV 178 (353)
T ss_pred HHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhh
Confidence 445667888888887532111110 000 0 113445558999999999999999997544
No 304
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=25.30 E-value=2e+02 Score=27.92 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHc-CCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY-GVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~-Gi~VilDlH~~ 221 (436)
+.--+.|.+.|++++..--.. ++ ..|...+-.-...+-+.++++ +|+++||+|..
T Consensus 114 ~~L~~~Le~~Gi~v~h~~t~~----d~---~~y~~sY~~Sr~tv~~~l~~~p~i~~~iDiHRD 169 (268)
T PF07454_consen 114 DRLAQELEKYGIGVIHDKTIH----DY---PSYNQSYKRSRETVKKALKENPDIKVVIDIHRD 169 (268)
T ss_pred HHHHHHHHHCCCcEEEeCCCC----Cc---chhHHHHHHHHHHHHHHHHHCCCceEEEEecCC
Confidence 556677899999998863311 11 134333444444455666667 78999999975
No 305
>COG5483 Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=1e+02 Score=29.05 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCCCCC
Q 013777 200 LDNAFDWAEKYGVKVIVDLHAAPGSQNGN 228 (436)
Q Consensus 200 ld~~v~~a~~~Gi~VilDlH~~pg~qng~ 228 (436)
+...++..++.|-+|+||.-..|.||.++
T Consensus 13 l~~~~d~l~~lgsrvmIdvrrfprSqta~ 41 (289)
T COG5483 13 LLYTIDKLHELGSRVMIDVRRFPRSQTAV 41 (289)
T ss_pred HHHHHHHHHhhCceEEEEEeeccccccch
Confidence 55667777889999999999999988543
No 306
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=25.17 E-value=6.6e+02 Score=24.66 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCC----C-----ccchHHHHHHHH-HHHHHcCCEEEEEcC----CCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKP----F-----VGGSSKVLDNAF-DWAEKYGVKVIVDLH----AAPGSQ 225 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~----~-----~~~~l~~ld~~v-~~a~~~Gi~VilDlH----~~pg~q 225 (436)
..-|+.|+++|+|+|=|-. +.+|...+. | ..=.-+.|.+++ +...+.|++|.-=|- ..|...
T Consensus 20 ~~l~~ri~~~~~~tV~Lqa----f~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~lp~~~ 95 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQA----FADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDLPKVK 95 (294)
T ss_pred HHHHHHHHHcCCCEEEEEe----eeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccCCCcc
Confidence 5679999999999999843 455543222 1 111345566665 455688998764221 112211
Q ss_pred CCCCC---CCCCCCC---CCCChhHHHHHHHHHHHHHHH-------hCCCCceeEEE---eecCCCCCCCChhHHHHHHH
Q 013777 226 NGNEH---SATRDGF---QEWGDSNVADTVAVIDFLAAR-------YANRPSLAAIE---LINEPLAPGVALDTLKSYYK 289 (436)
Q Consensus 226 ng~~~---sg~~~~~---~~w~~~~~~~~~~~~~~lA~r-------y~~~~~v~g~e---L~NEP~~~~~~~~~~~~~~~ 289 (436)
.-... .....++ ..|.+...+...++-+.||.. |.|+..+-=+| +.++|.. ......+..|..
T Consensus 96 ~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~-~~Kt~~Li~ft~ 174 (294)
T PF14883_consen 96 RADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPAD-RQKTRALIDFTM 174 (294)
T ss_pred hhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhh-HHHHHHHHHHHH
Confidence 00000 0001111 234467777777888888863 22222222222 1222221 112346788999
Q ss_pred HHHHHHHhhCCC
Q 013777 290 AGYDAVRKYTST 301 (436)
Q Consensus 290 ~~~~aIR~~~p~ 301 (436)
++.++||.+.|+
T Consensus 175 eL~~~v~~~rp~ 186 (294)
T PF14883_consen 175 ELAAAVRRYRPD 186 (294)
T ss_pred HHHHHHHHhCcc
Confidence 999999999875
No 307
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=25.04 E-value=69 Score=31.31 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEc
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDL 218 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDl 218 (436)
.++.|..+.++|+++||+|.+|=
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 68999999999999999999983
No 308
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=24.86 E-value=1.1e+02 Score=32.25 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=31.3
Q ss_pred CCeEEeecccccCCC----CC-----cCHHHHHHHHHHHHHHHc-c--CCCcEEEEceec
Q 013777 370 GPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVYG-R--ATFGWAYWAHKC 417 (436)
Q Consensus 370 ~p~v~vGEwg~~~~~----~~-----~~~~~~~~~~~~q~~~~~-~--~~~Gw~~W~~k~ 417 (436)
+.|++|.|-|..... .+ ...+.++++++..+++.+ + .-.|++.|++-.
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~D 427 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCID 427 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 445999999976421 11 122345677777777763 3 357999999876
No 309
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=24.76 E-value=8.2e+02 Score=25.60 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCC--CccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKP--FVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGF 237 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~--~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~ 237 (436)
.+-.+.+++.|+|.+-|.- .+-...+. ...-.|..+.++.+..+.|||+|.|.+.-+..-+ ..|-...
T Consensus 186 kDYAR~laSiGINg~v~NN-----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~~----lGgL~TA- 255 (684)
T COG3661 186 KDYARALASIGINGTVLNN-----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPME----LGGLKTA- 255 (684)
T ss_pred HHHHHHHhhcCcceEEecc-----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCccc----cCCcCcC-
Confidence 3446678999999988731 01111122 2233788899999999999999999886432111 1111111
Q ss_pred CCCChhHHHHHHHHHHHHH-HHhCCCCceeEEEee
Q 013777 238 QEWGDSNVADTVAVIDFLA-ARYANRPSLAAIELI 271 (436)
Q Consensus 238 ~~w~~~~~~~~~~~~~~lA-~ry~~~~~v~g~eL~ 271 (436)
+..-++..++|+.-| .-|+--|..-||-+.
T Consensus 256 ----DPLDe~VrawWkeka~~IY~yIPDFGGFLVK 286 (684)
T COG3661 256 ----DPLDEAVRAWWKEKADEIYKYIPDFGGFLVK 286 (684)
T ss_pred ----CcccHHHHHHHHHHHHHHHHhcccccceEEe
Confidence 123356667887654 457777776666443
No 310
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=24.73 E-value=4.2e+02 Score=26.13 Aligned_cols=103 Identities=22% Similarity=0.203 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCC-CCCCCCChhHHHHHHHHHHHHHHH---hCCCCceeEEEee
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATR-DGFQEWGDSNVADTVAVIDFLAAR---YANRPSLAAIELI 271 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~-~~~~~w~~~~~~~~~~~~~~lA~r---y~~~~~v~g~eL~ 271 (436)
.-..|+.++..|++.+--++|=+...|+- ++++.. .|. .....+.+.++++.||+. |.+.+.|+.
T Consensus 45 ~~~~l~~~~~~a~~~~~~~vlVvY~lP~R----DC~a~~S~Ge---g~~~~~~Yk~wId~ia~~i~~~g~~~~vvI---- 113 (298)
T PF01341_consen 45 VRQYLRAAVAQAAAAGKTPVLVVYNLPNR----DCAAGASAGE---GADSLASYKEWIDPIAAGIKKYGDRRAVVI---- 113 (298)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEE---TTC----STTSSSTSSS---GGTHHHHHHHHHHHHHHHHHHTTTSEEEEE----
T ss_pred HHHHHHHHHHhhhccCCceEEEEeccCCC----CccccccCCC---CCCchhHHHHHHHHHHHHHHhcCCCceEEE----
Confidence 45778889999998888888888888863 332211 111 124566666677777665 488777764
Q ss_pred cCCCCCC-----CC----h--hHHHHHHHHHHHHHHhh--CCCeEEEEeCC
Q 013777 272 NEPLAPG-----VA----L--DTLKSYYKAGYDAVRKY--TSTAYVIMSNR 309 (436)
Q Consensus 272 NEP~~~~-----~~----~--~~~~~~~~~~~~aIR~~--~p~~~Viv~~~ 309 (436)
=||..-. .. . .....+.+.+--+|+.. .|+..|.+..+
T Consensus 114 lEPDaL~~lvtn~~~~~C~~~~~~~~r~~~l~yAv~~L~~~~na~vYlDaG 164 (298)
T PF01341_consen 114 LEPDALANLVTNMSTPACGNAAQQAERLELLAYAVDKLSALPNAWVYLDAG 164 (298)
T ss_dssp E-TTCHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred ECcchhhhhhcccCcccccchhccHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 3776311 00 0 11233444444455544 46889998853
No 311
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.68 E-value=7.2e+02 Score=25.64 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhC--CCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHc--CCEEEEEcC-CCCC
Q 013777 158 ITDEDFKFLSSN--GINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKY--GVKVIVDLH-AAPG 223 (436)
Q Consensus 158 ite~d~~~ia~~--G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~--Gi~VilDlH-~~pg 223 (436)
++++.++.|++. |+++|-||+- ...+..- .... .-..+.+.++++.++++ |+.+..|+- +.||
T Consensus 240 l~~ell~~~~~~~~~~~~l~igiq--Sgsd~vL-k~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~Pg 308 (437)
T PRK14331 240 LDEDIIKAMADIPQVCEHLHLPFQ--AGSDRIL-KLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPT 308 (437)
T ss_pred CCHHHHHHHHcCCccCCceecccc--cCChHHH-HHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCC
Confidence 678999999987 5888888772 2211100 0000 12456778889999998 998766643 3343
No 312
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.65 E-value=2.5e+02 Score=29.25 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~-~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
-.|.++.+.+.++|++.|++-++-=.. .... ...+.-..+..+.++.+.|+++++.||-|
T Consensus 273 v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~-~~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 273 VATAEQAKALIDAGADGLRVGIGPGSICTTRI-VAGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred CCCHHHHHHHHHhCCCEEEECCCCCcCCccce-ecCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 468999999999999999986631100 0000 00111126788888889999999999886
No 313
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.58 E-value=2.4e+02 Score=28.20 Aligned_cols=132 Identities=17% Similarity=0.286 Sum_probs=77.8
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCcc---chHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCC
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVG---GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 232 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~---~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg 232 (436)
+-.+++-++.|+++|++-+-+.++ ..||.-.....+ =..+.+.++++++...||.|+|..-..||-
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~---aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~-------- 268 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVD---ALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV-------- 268 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeecc---cCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc--------
Confidence 346789999999999998888774 234421111111 157888888999999999999998888873
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCceeEEEeecCCCCCC-----CChhHHHHHHHHHHHHHHhhCCCeEEE
Q 013777 233 TRDGFQEWGDSNVADTVAVIDFLAAR--YANRPSLAAIELINEPLAPG-----VALDTLKSYYKAGYDAVRKYTSTAYVI 305 (436)
Q Consensus 233 ~~~~~~~w~~~~~~~~~~~~~~lA~r--y~~~~~v~g~eL~NEP~~~~-----~~~~~~~~~~~~~~~aIR~~~p~~~Vi 305 (436)
|-+...+++++-++- =|..|.+ |++.. +|+--+ ...=.|++||..+-..=.+++-..+|+
T Consensus 269 -----------ND~E~~~iIe~A~~iGaGkk~p~l-giQky-ipyk~GRkp~~~k~~~fkeFYrwLrelEketg~kpLil 335 (414)
T COG2100 269 -----------NDDEMPKIIEWAREIGAGKKWPPL-GIQKY-IPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVKPLIL 335 (414)
T ss_pred -----------ChHHHHHHHHHHHHhCCCCCCCCc-ceEEe-eeecccCCccccccCcHHHHHHHHHHHHHHhCCCcccc
Confidence 112333444443331 2333443 46554 344211 122347788877766666666444443
Q ss_pred EeCCCC
Q 013777 306 MSNRLG 311 (436)
Q Consensus 306 v~~~~~ 311 (436)
-...++
T Consensus 336 kP~~fG 341 (414)
T COG2100 336 KPGEFG 341 (414)
T ss_pred ChhhcC
Confidence 333343
No 314
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=24.52 E-value=2.6e+02 Score=26.88 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=36.2
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
|.+..+..-+.+|.++|=|-+.. + .-+.|.++++.|.+.||.+++..|.
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L------------~~~~l~~l~~~a~~lGle~lVEVh~ 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--L------------SDDQLEELLELAHSLGLEALVEVHN 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--S------------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--C------------CHHHHHHHHHHHHHcCCCeEEEECC
Confidence 46777888888899988875431 1 1255889999999999999999996
No 315
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.99 E-value=42 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.7
Q ss_pred HHHHHhCCCCEEEecCcccc
Q 013777 163 FKFLSSNGINAVRIPVGWWI 182 (436)
Q Consensus 163 ~~~ia~~G~N~VRipv~~~~ 182 (436)
-+.|+++|.+.|.||.--|.
T Consensus 24 ~r~L~~~G~~Vi~Ip~~eW~ 43 (58)
T PF08373_consen 24 HRHLKALGYKVISIPYYEWN 43 (58)
T ss_pred HHHHHHCCCEEEEecHHHHH
Confidence 46789999999999987664
No 316
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=23.87 E-value=54 Score=30.37 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=37.5
Q ss_pred CCCCCCCCcccccccccccccchhhhhccCcChhhHHHHHhhhhcCCHHHHHH
Q 013777 113 SSWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKF 165 (436)
Q Consensus 113 ~~W~~~~ps~F~~~~~~~~~~e~~~~~~~G~~~a~~~~~~h~~~~ite~d~~~ 165 (436)
.||.+..|.+|.....+.......++-|.|...+..+|+++|..-+|+++...
T Consensus 135 ~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~ 187 (212)
T cd03751 135 GGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVK 187 (212)
T ss_pred EEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHH
Confidence 35544468888765444344444567888888999999999988888877643
No 317
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=23.85 E-value=2.3e+02 Score=29.47 Aligned_cols=95 Identities=9% Similarity=0.316 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 013777 157 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 235 (436)
Q Consensus 157 ~ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~ 235 (436)
.++++|+++|.+.++.=+.|.|+- .+|.-...+. ...-..+-+.+++..++||.+..-+-..||-. |
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVha---t~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiN---------D 192 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVHA---TEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIN---------D 192 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEec---CCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcC---------C
Confidence 467999999999999988887752 2331100000 11234455566777788887766666667631 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEee
Q 013777 236 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI 271 (436)
Q Consensus 236 ~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~ 271 (436)
+ +..+++++.+..+.. ++.|.|..+-++
T Consensus 193 g------~~L~~Ti~dL~~~~~--~~~P~v~S~avV 220 (433)
T TIGR03279 193 G------KHLERTLRDLAQFHD--GDWPTVLSVAVV 220 (433)
T ss_pred H------HHHHHHHHHHHhhcc--cCCCceeEEEEE
Confidence 1 344555544444432 556766555444
No 318
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.75 E-value=55 Score=30.72 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
..+.+...++|.+.|=+-+.|...... . ....++.+.++++.|+++||+|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~----~-~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG----N-EDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT----H-HHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc----c-HHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 467888899999999998876433221 1 2347888999999999999999998
No 319
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=23.71 E-value=6.6e+02 Score=24.95 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=31.1
Q ss_pred ceeEEEeecCCCCC-CCChhHHHHHHHHHHHHHHhhCCCeEEEEeCC
Q 013777 264 SLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 309 (436)
Q Consensus 264 ~v~g~eL~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~ 309 (436)
++-+|+..+|+... ....+.+..+..++.+.+|+..|+.+||+.++
T Consensus 168 ~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG 214 (315)
T TIGR01370 168 LIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNG 214 (315)
T ss_pred cchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 45556666554321 12346678888999999999999987776654
No 320
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=23.64 E-value=2.8e+02 Score=25.76 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEE
Q 013777 196 SSKVLDNAFDWAEKYGVKVIV 216 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~Vil 216 (436)
.-+.+.++.+.++++|+.|+|
T Consensus 191 ~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCeEEe
Confidence 457788888899999999976
No 321
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.61 E-value=2e+02 Score=29.91 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHhC--CCCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHHc--CCEEEEEcC
Q 013777 157 YITDEDFKFLSSN--GINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKY--GVKVIVDLH 219 (436)
Q Consensus 157 ~ite~d~~~ia~~--G~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~~--Gi~VilDlH 219 (436)
.++++.++.|++. |++.+-||+- ...+..- .... .-..+.+.++++.+++. ||.+..|+-
T Consensus 242 ~l~~ell~~~~~~~~g~~~l~iglQ--Sgsd~vL-k~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~I 306 (445)
T PRK14340 242 DISESLVRTIAARPNICNHIHLPVQ--SGSSRML-RRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLI 306 (445)
T ss_pred hcCHHHHHHHHhCCCCCCeEEECCC--cCCHHHH-HhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEE
Confidence 3689999999885 8999999882 1211100 0000 12467788899999999 998877754
No 322
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=23.45 E-value=2e+02 Score=29.98 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
..+.+.+++++|+++++.+|.|=.
T Consensus 218 s~e~l~~l~~~~~~~~i~lI~DEi 241 (447)
T PLN02607 218 QRSVLEDILDFVVRKNIHLVSDEI 241 (447)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecc
Confidence 467899999999999999999865
No 323
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=23.37 E-value=4.9e+02 Score=22.56 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=38.4
Q ss_pred EEEEe--CCceEEeecCCCCceEEEEecCCC----CCceEEEEEcCCCCcceEEeccC--CceEEEeeCeEE
Q 013777 43 NFRVN--NKQFIGLENQGQGNGLVAVSNTAG----YSETFQIVRKDGDSSRVRLSASN--GMFIQAISETRL 106 (436)
Q Consensus 43 ~~~~~--~~~~~~~~~~g~~~~~~a~~~~~~----~~e~f~~~~~~~~~~~v~i~~~n--G~~lq~~~~~~v 106 (436)
.|++. .++||.-.+. ...+.+.....+ .-.+|.|++-=.+++.|.+.+.| |.||...+-.+.
T Consensus 4 ~~~s~~~~~ryirh~~~--~~~~~~v~~~s~~~~r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~~v~ 73 (142)
T PF05270_consen 4 RLTSPNYPDRYIRHRGS--LVRLDPVSSSSSALDRADATFRVVPGLADSSCVSFESVNYPGYYLRHSNFRVR 73 (142)
T ss_dssp EEEESSSTTEEEEEETT--EEEEEES-SSGGHHHHHGG-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEE
T ss_pred EEECCCCCCeEEEEcCc--eEEEeeccCCcchhhccCceEEEEEccCCCCEEEEEECCCCCcEEEEECCEEE
Confidence 45555 4788888752 232333333322 25789999977777899998887 999987655553
No 324
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=23.30 E-value=1.3e+02 Score=30.28 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=33.8
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHc--CCEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~--Gi~VilDlH~~ 221 (436)
+.+.++.|-+.|+|.+||-+++- ++ +...+.++.+=+.++++ .+.+++||-+.
T Consensus 16 ~~e~l~~li~aGm~v~RiN~SHg---~~-------e~~~~~i~~iR~a~~~~~~~i~IllDl~GP 70 (348)
T PF00224_consen 16 SVEVLRKLIEAGMNVARINFSHG---TH-------EEHKEIIENIREAEKELGKPIAILLDLKGP 70 (348)
T ss_dssp SHHHHHHHHHHTEEEEEEETTSS----H-------HHHHHHHHHHHHHHHHTTTS-EEEEEE-TS
T ss_pred CHHHHHHHHHhccEEEEEeeecC---CH-------HHHHHHHHHHHHHHhccCCceEEEeccCCC
Confidence 36789999999999999987641 11 12444444444444443 48999999853
No 325
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=23.22 E-value=2.3e+02 Score=26.25 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV 214 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~V 214 (436)
|.-++.++++|.++|.+ + |-.+ ...++.|..+.+.|.++|+++
T Consensus 138 etAiaml~dmG~~SiKf------f--Pm~G----l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKF------F--PMGG----LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE-----------TT----TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeE------e--ecCC----cccHHHHHHHHHHHHHcCcee
Confidence 67789999999999996 1 1011 137888999999999999987
No 326
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=23.21 E-value=4e+02 Score=22.43 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=43.0
Q ss_pred EEEEeCCceEEeecCCCCceEEEEecCCCCCceEEEEEcCCCCcceEEecc-CCceEEEeeCeEEE
Q 013777 43 NFRVNNKQFIGLENQGQGNGLVAVSNTAGYSETFQIVRKDGDSSRVRLSAS-NGMFIQAISETRLT 107 (436)
Q Consensus 43 ~~~~~~~~~~~~~~~g~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~i~~~-nG~~lq~~~~~~v~ 107 (436)
+|=+.++.|+.+.. ++.|-++++...+.-.|++.--+ .+.|.|+.. .+.||..+...-+.
T Consensus 6 ~Ly~~~~~~L~I~~---~G~V~Gt~~~~~~~~ile~~s~~--~g~V~ik~~~s~~YLCmn~~G~ly 66 (126)
T smart00442 6 QLYCRNGQHLQILP---DGTVDGTRDESSSFTILEIIAVA--VGVVAIKGVASCRYLCMNKCGKLY 66 (126)
T ss_pred EEEeCCCeEEEEcC---CceEecccCCCCcceEEEEEecc--CCEEEEEEcccceEEEECCCCCEE
Confidence 44444668888875 45688888887888888877765 357899985 69999876554443
No 327
>PLN02623 pyruvate kinase
Probab=23.12 E-value=87 Score=33.78 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=34.3
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHH---cCCEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEK---YGVKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~---~Gi~VilDlH~~ 221 (436)
+++.++.|.+.|+|.+||-++.- +. +...+.++.+=+.+++ +.+.+++|+-+.
T Consensus 124 s~e~l~~li~aGmnv~RlNfSHg---~~-------e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GP 179 (581)
T PLN02623 124 TREMIWKLAEAGMNVARLNMSHG---DH-------ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 179 (581)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---CH-------HHHHHHHHHHHHHHHHcCCCceEEEecCCCC
Confidence 37889999999999999987531 11 1123333333333333 458999999754
No 328
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.11 E-value=8.4e+02 Score=25.95 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHhCC--CCEEEecCccccccCCC---CCCCCccchHHHHHHHHHHHHHc--CCEEEEEc
Q 013777 157 YITDEDFKFLSSNG--INAVRIPVGWWIANDPT---PPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDL 218 (436)
Q Consensus 157 ~ite~d~~~ia~~G--~N~VRipv~~~~~~~~~---~~~~~~~~~l~~ld~~v~~a~~~--Gi~VilDl 218 (436)
.++++.++.|++.| ++++-||+- ...+.. -...+ ..+.+.++++.++++ ++.+..|+
T Consensus 306 ~i~deli~~m~~~g~~~~~l~lgvQ--Sgsd~vLk~M~R~~---t~e~~~~~v~~lr~~~p~i~i~tdi 369 (509)
T PRK14327 306 DFDDHLIEVLAKGGNLVEHIHLPVQ--SGSTEVLKIMARKY---TRESYLELVRKIKEAIPNVALTTDI 369 (509)
T ss_pred cCCHHHHHHHHhcCCccceEEeccC--CCCHHHHHhcCCCC---CHHHHHHHHHHHHHhCCCcEEeeeE
Confidence 46889999999999 678888772 121110 00112 346677788888887 66655554
No 329
>PRK10425 DNase TatD; Provisional
Probab=22.90 E-value=4.4e+02 Score=25.17 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=26.6
Q ss_pred CeEEeecccccCCCCCcCHHHHHHHHHHHHHHHccCCCcEEEEc
Q 013777 371 PLTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWA 414 (436)
Q Consensus 371 p~v~vGEwg~~~~~~~~~~~~~~~~~~~q~~~~~~~~~Gw~~W~ 414 (436)
..+-|||.|..........+..++++++|+++-.+.+.--...+
T Consensus 85 ~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 85 EVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred CEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 44679999976432223455566788888876555444434443
No 330
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=22.89 E-value=1.7e+02 Score=28.02 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 013777 194 GGSSKVLDNAFDWAEKYGVKVIVDLHAAP 222 (436)
Q Consensus 194 ~~~l~~ld~~v~~a~~~Gi~VilDlH~~p 222 (436)
..-++.+|++++.|...-=.+|+|+|+-.
T Consensus 126 d~PF~~~d~l~~~~~~~~~~iiVDFHAEt 154 (266)
T COG1692 126 DNPFKAADKLLDEIKLGTDLIIVDFHAET 154 (266)
T ss_pred CCHHHHHHHHHHhCccCCceEEEEccccc
Confidence 45688999999998887778999999853
No 331
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=22.70 E-value=7.5e+02 Score=24.43 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHH-HH----cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCceeEE
Q 013777 195 GSSKVLDNAFDWA-EK----YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAI 268 (436)
Q Consensus 195 ~~l~~ld~~v~~a-~~----~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~-~~~v~g~ 268 (436)
.+++.+-+.|..+ .+ -...+|+..|+.|-+.-. .| +.+.++..+..+.|+++... .+..++|
T Consensus 167 ~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~---~G---------d~Y~~~~~~ta~~l~~~l~~~~~~~~~f 234 (322)
T TIGR00109 167 KYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVD---EG---------DPYPAECEATTRLIAEKLGFPNEYRLTW 234 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhh---CC---------CChHHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 3555555444332 12 245899999999853210 01 14556777788888888763 4456677
Q ss_pred EeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCC
Q 013777 269 ELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 311 (436)
Q Consensus 269 eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~ 311 (436)
+----|. +.+.....+.+..+.+.+.+++++++.++-
T Consensus 235 QS~~g~~------~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv 271 (322)
T TIGR00109 235 QSRVGPE------PWLGPYTEELLEKLGEQGVQHIVVVPIGFT 271 (322)
T ss_pred eCCCCCC------CcCCCCHHHHHHHHHHcCCceEEEECCccc
Confidence 6532221 223456666777777777788888886664
No 332
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=22.70 E-value=2.3e+02 Score=29.58 Aligned_cols=59 Identities=27% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCC-------------------CCCCCCccc-hHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDP-------------------TPPKPFVGG-SSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~-------------------~~~~~~~~~-~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
..-+..++.+|++.+-||+.- ...++ .-..|.-.. .+++=.+++++|++|++.||=|-.
T Consensus 190 ~~~~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 190 PGALQALEALGARVIPVPVDE-DGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred HHHHHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 356777889999999999952 12221 111222111 688889999999999999998754
No 333
>PLN02429 triosephosphate isomerase
Probab=22.69 E-value=7.7e+02 Score=24.52 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
|=-...|++.|++.|=|-=+ +. ...| .+.-+.+.+=+..|.++||.+|+.+-
T Consensus 137 EVSa~mLkd~Gv~~ViiGHS-----ER--R~~f-~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 137 EISVEQLKDLGCKWVILGHS-----ER--RHVI-GEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----cc--CCCC-CcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 44456677777777765221 11 1112 22334455555669999999999874
No 334
>PRK12677 xylose isomerase; Provisional
Probab=22.62 E-value=8.3e+02 Score=24.88 Aligned_cols=72 Identities=25% Similarity=0.238 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--CceeEEEee-
Q 013777 195 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--PSLAAIELI- 271 (436)
Q Consensus 195 ~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~--~~v~g~eL~- 271 (436)
..++.+.+.|+.|++.|...|+=.-+..| .+..+.. .+ ....+++++.++.|+++-++. ...+++|.+
T Consensus 111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g----~~~~~~~----d~-~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp 181 (384)
T PRK12677 111 YALRKVLRNIDLAAELGAKTYVMWGGREG----AEYDAAK----DV-RAALDRYREAIDLLAAYVKDQGYDLRFALEPKP 181 (384)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCC----ccCcccC----CH-HHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCC
Confidence 35888999999999999987553322111 1111110 00 245566777788888766543 355777765
Q ss_pred cCCC
Q 013777 272 NEPL 275 (436)
Q Consensus 272 NEP~ 275 (436)
|||.
T Consensus 182 ~ep~ 185 (384)
T PRK12677 182 NEPR 185 (384)
T ss_pred CCCC
Confidence 3454
No 335
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=22.49 E-value=89 Score=21.50 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=26.6
Q ss_pred CceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhC
Q 013777 263 PSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT 299 (436)
Q Consensus 263 ~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~ 299 (436)
|...|+..++|...|-.+.+.-+.||+.+++.|..+.
T Consensus 4 p~y~gigp~De~giP~~~vd~~kDWYktMFkqIHk~~ 40 (47)
T PF02208_consen 4 PHYEGIGPVDESGIPLSNVDRPKDWYKTMFKQIHKLH 40 (47)
T ss_pred CcCCCcCccccCCCccccccchhHHHHHHHHHHHhhc
Confidence 3344566777766554455778899999999998865
No 336
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=22.41 E-value=7.5e+02 Score=24.29 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCC--CEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~--N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
++.++.+++.+| .+|=|-+.|+ +....-.+++..+.-..++|+.+++.|++|++-+|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~---~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~ 87 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYM---DSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPG 87 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhh---CCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecc
Confidence 344555666663 3344433332 1111123444556667889999999999999877743
No 337
>PRK05826 pyruvate kinase; Provisional
Probab=22.37 E-value=1.8e+02 Score=30.51 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=35.3
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHc--CCEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~--Gi~VilDlH~~ 221 (436)
+.+.++.|-+.|+|.+||-+++- +. +...+.++.+=+..++. -+.+++|+-+.
T Consensus 18 ~~e~l~~li~~G~~v~RiN~sHg---~~-------~~~~~~i~~ir~~~~~~~~~i~I~~Dl~Gp 72 (465)
T PRK05826 18 SPENLEKLIEAGVNVVRLNFSHG---SH-------EEHGKRAALVREIAAKLGRPVAILLDLKGP 72 (465)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCC---CH-------HHHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 46889999999999999987541 11 12344444444444444 47899999764
No 338
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=22.26 E-value=1.3e+02 Score=31.72 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=31.3
Q ss_pred CCeEEeecccccCCCC----C-----cCHHHHHHHHHHHHHHHc-c--CCCcEEEEceec
Q 013777 370 GPLTFVGEWTCEWNVK----D-----ASKQDYQRFANAQLDVYG-R--ATFGWAYWAHKC 417 (436)
Q Consensus 370 ~p~v~vGEwg~~~~~~----~-----~~~~~~~~~~~~q~~~~~-~--~~~Gw~~W~~k~ 417 (436)
+.|++|.|-|...... + ...+.++.++++.+++.+ . .-.|++.|++-.
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~D 427 (478)
T PRK09593 368 QKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCID 427 (478)
T ss_pred CCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchH
Confidence 3459999999763210 0 112345677777777763 3 457999999976
No 339
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=22.16 E-value=2.7e+02 Score=28.79 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCcc-chHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVG-GSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~-~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
|+-+....+.|.++==| ++..|.+ |.-. -.-+.|..++++|.+++|.||+|=-
T Consensus 214 E~A~~~A~~~~~kVkGv-----litNPsN--PLG~~~~~e~L~~ll~Fa~~kniHvI~DEI 267 (471)
T KOG0256|consen 214 EAALNQARKLGLKVKGV-----LITNPSN--PLGTTLSPEELISLLNFASRKNIHVISDEI 267 (471)
T ss_pred HHHHHHHHHhCCceeEE-----EEeCCCC--CCCCccCHHHHHHHHHHHhhcceEEEeehh
Confidence 45566677788776555 3445543 3321 2568899999999999999999843
No 340
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=22.03 E-value=3.1e+02 Score=26.81 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 216 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vil 216 (436)
++.++.+++.|.+.|++=+..-.. .+....+...-..+.+..+++.|+++|+.|.+
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~~~-~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~ 178 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGGVL-SPGDPPPDTQFSEEELRAIVDEAHKAGLYVAA 178 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCCcC-CCCCCCcccCcCHHHHHHHHHHHHHcCCEEEE
Confidence 456788888999999995533111 11110010112468899999999999998765
No 341
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=22.00 E-value=2.5e+02 Score=30.23 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCEEEecCcc-ccccCCCCCCC------Cc-----cchHHHHHHHHHHHHHcCCEEEEE
Q 013777 160 DEDFKFLSSNGINAVRIPVGW-WIANDPTPPKP------FV-----GGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~-~~~~~~~~~~~------~~-----~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
++.++.|++.-||.|-. ..| |.+..|-+.+. |. .-+.+.+++.|+.|+++||++|.=
T Consensus 121 ~~~i~~L~~yHIN~~QF-YDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Y 189 (559)
T PF13199_consen 121 EAEIDQLNRYHINGLQF-YDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAY 189 (559)
T ss_dssp HHHHHHHHHTT--EEEE-TS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHhhCcCeEEE-EeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehh
Confidence 78999999999999886 232 22333333222 21 227899999999999999999984
No 342
>PLN02461 Probable pyruvate kinase
Probab=21.99 E-value=2.1e+02 Score=30.42 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=36.3
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcC--CEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~G--i~VilDlH~~ 221 (436)
+.+.++.|...|+|.+||-++.- +. +...+.++.+-+.+++.| +.+++|+-+.
T Consensus 35 ~~e~l~~li~aGm~v~RlN~SHg---~~-------e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GP 89 (511)
T PLN02461 35 SVPMLEKLLRAGMNVARFNFSHG---SH-------EYHQETLDNLRQAMANTGILCAVMLDTKGP 89 (511)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---CH-------HHHHHHHHHHHHHHHHcCCCeEEEeeCCCC
Confidence 46889999999999999987541 11 124455555555555555 6788898754
No 343
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.92 E-value=9.1e+02 Score=27.25 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHhCC------CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCC------
Q 013777 157 YITDEDFKFLSSNG------INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS------ 224 (436)
Q Consensus 157 ~ite~d~~~ia~~G------~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~------ 224 (436)
+-+|+++..+.+.. +.+++|-+.+|. +....-.|+...+...+.+++..++.||++|+-++-.-..
T Consensus 276 ~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~--~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~ 353 (772)
T COG1501 276 YYDEDEVLEFIDEMRERDIPLDVFVLDIDFWM--DNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFK 353 (772)
T ss_pred cccHHHHHHHHhhcccccCcceEEEEeehhhh--ccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHH
Confidence 44577766654433 567777664222 1111123445566667799999999999988866532110
Q ss_pred ---CCCCCCC---CCCCCCCCCC------hhHHHHHHHHHH-HHHHHhCCCCceeEEEeecCCCCCCC-------ChhHH
Q 013777 225 ---QNGNEHS---ATRDGFQEWG------DSNVADTVAVID-FLAARYANRPSLAAIELINEPLAPGV-------ALDTL 284 (436)
Q Consensus 225 ---qng~~~s---g~~~~~~~w~------~~~~~~~~~~~~-~lA~ry~~~~~v~g~eL~NEP~~~~~-------~~~~~ 284 (436)
.+|.... |..-....|. +.....+.+.|. ...+.+.+.....-|-=+|||..... +....
T Consensus 354 e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~ 433 (772)
T COG1501 354 EAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEM 433 (772)
T ss_pred HHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHH
Confidence 1111111 1111112333 333445556666 45566666665555777999985321 22222
Q ss_pred H-----HHHHHHHHHHHhhCC-CeEEEEe
Q 013777 285 K-----SYYKAGYDAVRKYTS-TAYVIMS 307 (436)
Q Consensus 285 ~-----~~~~~~~~aIR~~~p-~~~Viv~ 307 (436)
. -+++..++++|+..+ ..+++++
T Consensus 434 ~N~yp~~~~~a~~~~~~~~~~~~r~~~ls 462 (772)
T COG1501 434 HNLYPLLYAKAVYEALKELGGNERPFILS 462 (772)
T ss_pred hcchhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 2 356778899999964 4666665
No 344
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.77 E-value=5.6e+02 Score=24.37 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=22.0
Q ss_pred CeEEeecccccCCCCCcCHHHHHHHHHHHHHHHccCC
Q 013777 371 PLTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRAT 407 (436)
Q Consensus 371 p~v~vGEwg~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 407 (436)
..+-|||.|-.........+...+++..|+++-.+.+
T Consensus 91 ~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~ 127 (258)
T PRK11449 91 KVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYD 127 (258)
T ss_pred CEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3467999997532222344556677777776654433
No 345
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.76 E-value=5.4e+02 Score=25.56 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=79.8
Q ss_pred CCHHHHHHHHhCCCCEEEecC-ccccccCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCC
Q 013777 158 ITDEDFKFLSSNGINAVRIPV-GWWIANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATR 234 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv-~~~~~~~~~~~~~~~~--~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~ 234 (436)
.+++.++.|+++|++.+ +. +...+ ++.-...... ...+..-++++.|++.||++--.+--
T Consensus 139 ~~~e~l~~LkeAGl~~i--~~~~~E~~-~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~-------------- 201 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSM--PGTAAEIL-DDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY-------------- 201 (343)
T ss_pred CHHHHHHHHHHhCcccc--cCcchhhc-CHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE--------------
Confidence 46889999999999965 32 22211 1100000111 13444567899999999976322111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC----CC-hhHHHHHHHHHHHHHHhhCCCeEEEEeCC
Q 013777 235 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG----VA-LDTLKSYYKAGYDAVRKYTSTAYVIMSNR 309 (436)
Q Consensus 235 ~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~----~~-~~~~~~~~~~~~~aIR~~~p~~~Viv~~~ 309 (436)
|.. ...+.....+.+++.|...+.....++=+-.++ |..+- .. ...=...+-+++...|=.-|+..+-+..+
T Consensus 202 -G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~-~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~ 278 (343)
T TIGR03551 202 -GHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVH-YNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQAS 278 (343)
T ss_pred -ecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccC-CCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeecc
Confidence 101 012455566667777776665544333222122 22110 00 01113355677888888889876666655
Q ss_pred CCCCChhh-hhcc---CCCCCcEEEEEeecCc
Q 013777 310 LGPADHKE-LLSF---ASGLSRVVIDVHYYNL 337 (436)
Q Consensus 310 ~~~~~~~~-~~~~---~~~~~nvv~~~H~Y~~ 337 (436)
|....... ...+ .++...+++.=|.+..
T Consensus 279 ~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~ 310 (343)
T TIGR03551 279 WVKLGKKLAQVALRCGANDLGGTLMEESISRA 310 (343)
T ss_pred ccccCHHHHHHHHhCCCccCCccceecccccc
Confidence 53222111 1111 2344456666555543
No 346
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.70 E-value=2.8e+02 Score=24.84 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 162 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 162 d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
.++.+++.|.+.|=+|.. + .-+.++++++.|+++|++++++++..
T Consensus 69 ~~~~~~~aGad~i~~h~~------~---------~~~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 69 EAEMAFKAGADIVTVLGA------A---------PLSTIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHhcCCCEEEEEee------C---------CHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 467788889888877531 0 11457889999999999999998764
No 347
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=21.60 E-value=1.7e+02 Score=28.91 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
.++.++++++.|+++|+.|.||+-.
T Consensus 90 ~~~~l~~i~~~A~~~~v~v~iDaE~ 114 (313)
T PF01619_consen 90 ALERLRRICERAKEHGVFVLIDAEE 114 (313)
T ss_dssp HHHHHHHHHHHHHHTTEEEEE----
T ss_pred HHHHHHHHHHHhhcCCcEEEEcCCC
Confidence 5788999999999999999999864
No 348
>PRK05839 hypothetical protein; Provisional
Probab=21.54 E-value=2.6e+02 Score=28.05 Aligned_cols=24 Identities=25% Similarity=-0.002 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 196 SSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 196 ~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
..+.+.++++.|+++|+.||+|-.
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~ 196 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDEC 196 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccc
Confidence 578899999999999999999853
No 349
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.37 E-value=8.1e+02 Score=24.33 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCC--CEEEecCccccccCCCCCCCCccchHHHH--HHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVL--DNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~--N~VRipv~~~~~~~~~~~~~~~~~~l~~l--d~~v~~a~~~Gi~VilDlH~~ 221 (436)
++.++.+++.|| ++|=|-+.|+.. ...-.++...+.-. +++|+.+++.|++|++-+|..
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~---~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 89 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDR---RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPA 89 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccC---ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCc
Confidence 344556667764 344444444311 11112334445556 889999999999999987743
No 350
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=21.25 E-value=1.3e+03 Score=26.77 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=32.0
Q ss_pred HHHHHhCC--CCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 163 FKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 163 ~~~ia~~G--~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
++.+++.| +++|=+-+.|+. ....-.|+...+.....+++..++.|+++++-+|
T Consensus 207 a~~fre~~IP~DvIwlDidYm~---g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iid 262 (978)
T PLN02763 207 ARTFREKKIPCDVVWMDIDYMD---GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLD 262 (978)
T ss_pred HHHHHHcCCCceEEEEehhhhc---CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEc
Confidence 44455666 345555555431 1111133444555678899999999999887655
No 351
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=21.23 E-value=2.6e+02 Score=20.19 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHh-CCCCceeEEEeecCCCC
Q 013777 244 NVADTVAVIDFLAARY-ANRPSLAAIELINEPLA 276 (436)
Q Consensus 244 ~~~~~~~~~~~lA~ry-~~~~~v~g~eL~NEP~~ 276 (436)
..+.+++.++.+++.. +..|..++++++-.+..
T Consensus 14 ~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 47 (78)
T PF03992_consen 14 KEEEFLAAFQELAEATLRKEPGCLSYELYRSLDD 47 (78)
T ss_dssp GHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 4578888899888877 78999999999875543
No 352
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.19 E-value=6.3e+02 Score=23.93 Aligned_cols=94 Identities=15% Similarity=0.247 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 013777 194 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 273 (436)
Q Consensus 194 ~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NE 273 (436)
...++.+.++++.|++.|...++ +|. |.... .. .+...+.+++.++.|++.-+.....+++|...=
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~-~~~--g~~~~--------~~---~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLV-FHP--GSYLG--------QS---KEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-ECC--CCCCC--------CC---HHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 34688888899999999998654 343 21100 00 034567778888888887666665566654432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhC--CCeEEEEe
Q 013777 274 PLAPGVALDTLKSYYKAGYDAVRKYT--STAYVIMS 307 (436)
Q Consensus 274 P~~~~~~~~~~~~~~~~~~~aIR~~~--p~~~Viv~ 307 (436)
|.. .+..-..++.+.|++++ |+.-+++.
T Consensus 147 ~~~------~~~~t~~~~~~li~~v~~~~~~g~~lD 176 (279)
T cd00019 147 QGN------EIGSSFEELKEIIDLIKEKPRVGVCID 176 (279)
T ss_pred CCC------CCCCCHHHHHHHHHhcCCCCCeEEEEE
Confidence 210 01112234445555555 55556665
No 353
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.17 E-value=7.9e+02 Score=24.10 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCC--CEEEecCccccccC-CCC--CCCCccchHHHHHHHHHHHHHcCCEEEEEcCCC
Q 013777 160 DEDFKFLSSNGI--NAVRIPVGWWIAND-PTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 221 (436)
Q Consensus 160 e~d~~~ia~~G~--N~VRipv~~~~~~~-~~~--~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~ 221 (436)
.+.++.+++.|| .+|=|-..|+.... ... .-.++...+.-..++|+.+++.|++|++-+|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 355666777774 45555555532100 000 012344555667889999999999999988743
No 354
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.96 E-value=2.7e+02 Score=26.26 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=73.6
Q ss_pred HHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC
Q 013777 162 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG 241 (436)
Q Consensus 162 d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg~qng~~~sg~~~~~~~w~ 241 (436)
-++.+++.|.+.|=||-- |+ +..+.++++++.|+++||++++-+|...
T Consensus 93 ~i~~~~~~Gadgvii~dl-----------p~--e~~~~~~~~~~~~~~~Gl~~~~~v~p~T------------------- 140 (244)
T PRK13125 93 FLNMARDVGADGVLFPDL-----------LI--DYPDDLEKYVEIIKNKGLKPVFFTSPKF------------------- 140 (244)
T ss_pred HHHHHHHcCCCEEEECCC-----------CC--CcHHHHHHHHHHHHHcCCCEEEEECCCC-------------------
Confidence 366777888888877521 11 1235688899999999999999988521
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCCChhhhhcc
Q 013777 242 DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSF 321 (436)
Q Consensus 242 ~~~~~~~~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~~~~~ 321 (436)
..+ .++.+++ ..+.++-+ -. +|... ..+.....+.++.+|+..++..|+++.+.. +.......
T Consensus 141 --~~e----~l~~~~~---~~~~~l~m-sv-~~~~g----~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~--~~e~i~~~ 203 (244)
T PRK13125 141 --PDL----LIHRLSK---LSPLFIYY-GL-RPATG----VPLPVSVERNIKRVRNLVGNKYLVVGFGLD--SPEDARDA 203 (244)
T ss_pred --CHH----HHHHHHH---hCCCEEEE-Ee-CCCCC----CCchHHHHHHHHHHHHhcCCCCEEEeCCcC--CHHHHHHH
Confidence 111 2233332 23344423 22 45532 135666667778888887666677776653 22233221
Q ss_pred -CCCCCcEEEEEeecC
Q 013777 322 -ASGLSRVVIDVHYYN 336 (436)
Q Consensus 322 -~~~~~nvv~~~H~Y~ 336 (436)
..+.+.+|+......
T Consensus 204 ~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 204 LSAGADGVVVGTAFIE 219 (244)
T ss_pred HHcCCCEEEECHHHHH
Confidence 234566777766553
No 355
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.79 E-value=2.6e+02 Score=26.71 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=36.0
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 219 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH 219 (436)
-++-++.++++||++|=|.-+.-. =..+...++|+.+++.|++|+-.+.
T Consensus 86 ~~~yl~~~k~lGf~~IEiSdGti~------------l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISDGTID------------LPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEecCCcee------------CCHHHHHHHHHHHHHCCCEEeeccc
Confidence 378899999999999998554311 1235677789999999999999887
No 356
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.77 E-value=2.3e+02 Score=22.89 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=33.7
Q ss_pred CCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHHhhCCCeEEEEeCCCCCCChhhh
Q 013777 261 NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKEL 318 (436)
Q Consensus 261 ~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~Viv~~~~~~~~~~~~ 318 (436)
.+|.++++.....|. .....++.+.+|+..|+.+|++++...+..+...
T Consensus 50 ~~pd~V~iS~~~~~~---------~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~ 98 (121)
T PF02310_consen 50 ERPDVVGISVSMTPN---------LPEAKRLARAIKERNPNIPIVVGGPHATADPEEI 98 (121)
T ss_dssp TTCSEEEEEESSSTH---------HHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHH
T ss_pred CCCcEEEEEccCcCc---------HHHHHHHHHHHHhcCCCCEEEEECCchhcChHHH
Confidence 378899998875554 2334677777999999999999865433334443
No 357
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.70 E-value=2.8e+02 Score=29.24 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
-|-+..+.+.++|++.||+-++-=..-.........-..+..+.++.+.|+++|+.||-|
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 478889999999999999977531110000000011137888899999999999999887
No 358
>PLN02681 proline dehydrogenase
Probab=20.68 E-value=2.8e+02 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHcCCEEEEEcCC
Q 013777 195 GSSKVLDNAFDWAEKYGVKVIVDLHA 220 (436)
Q Consensus 195 ~~l~~ld~~v~~a~~~Gi~VilDlH~ 220 (436)
..+++|+++++.|.++|+.|+||.-.
T Consensus 217 ~~~~rl~~i~~~A~~~gv~l~IDAE~ 242 (455)
T PLN02681 217 LAHERLQKLCERAAQLGVPLLIDAEY 242 (455)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCc
Confidence 36788999999999999999999854
No 359
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=20.64 E-value=9.1e+02 Score=24.63 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=37.9
Q ss_pred hcCCHHHHHHHHhCCCCEEEecCcccccc-CCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 013777 156 SYITDEDFKFLSSNGINAVRIPVGWWIAN-DPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 216 (436)
Q Consensus 156 ~~ite~d~~~ia~~G~N~VRipv~~~~~~-~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vil 216 (436)
+-++++.++.+++.|+ .|.|.+.=.... +......-..+.++.+-+.++.++++|+.+-+
T Consensus 111 ~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 111 TLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred EeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 3578899999999998 788766311000 00000000125788888888999999987544
No 360
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.62 E-value=1.2e+02 Score=29.24 Aligned_cols=59 Identities=8% Similarity=0.004 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 160 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 160 e~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
+=+.++||+.|-++|.|=+-|. . +.+ ...+..+.+|.++...|...+|-.+|.+-.++.
T Consensus 114 ~isa~riK~~G~~avK~Lvy~~-~---D~~-e~neqk~a~ierigsec~aedi~f~lE~ltyd~ 172 (306)
T COG3684 114 KISAKRIKEDGGDAVKFLVYYR-S---DED-EINEQKLAYIERIGSECHAEDLPFFLEPLTYDP 172 (306)
T ss_pred hhCHHHHHHhcccceEEEEEEc-C---Cch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeecCC
Confidence 3457889999999999966432 2 222 344568999999999999999999999887753
No 361
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=20.58 E-value=2.4e+02 Score=29.78 Aligned_cols=53 Identities=26% Similarity=0.311 Sum_probs=36.1
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcC--CEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~G--i~VilDlH~~ 221 (436)
+++.++.|-..|+|.+||-+++- ++ +...+.++.+-+..++.| +.+++||-+.
T Consensus 16 ~~e~l~~li~aG~~v~RiN~sHg---~~-------~~~~~~i~~vr~~~~~~~~~i~il~Dl~Gp 70 (480)
T cd00288 16 SVENLKKLIKAGMNVARMNFSHG---SH-------EYHQSRIDNVREAAEKTGGPVAIALDTKGP 70 (480)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCC---CH-------HHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46889999999999999987531 11 124455555555555555 6788898754
No 362
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.42 E-value=3.3e+02 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=41.5
Q ss_pred CCHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEE
Q 013777 158 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 217 (436)
Q Consensus 158 ite~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~VilD 217 (436)
.|.+-.+.|..+|.+.||+-++-=..-....-.-.--..+..+-++.+.|+++|..||-|
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEec
Confidence 478899999999999999977532111110000001127888999999999999998876
No 363
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.18 E-value=4.4e+02 Score=25.02 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCCceeEEEeecCCCCCCCChhHHHHHHHHHHHHHH-hhCCCeEEEEeC
Q 013777 249 VAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVR-KYTSTAYVIMSN 308 (436)
Q Consensus 249 ~~~~~~lA~ry~~~~~v~g~eL~NEP~~~~~~~~~~~~~~~~~~~aIR-~~~p~~~Viv~~ 308 (436)
+.+++.|.+++.+..-|.--|-.|=|.. .-+.+.+.++..++++.+. +.+.+.+||-++
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCN 70 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYG-EKSPEFILEYVLELLTFLKERHNIKLLVVACN 70 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4688899999988888888899999996 4567889999999999999 888988888775
No 364
>PRK06247 pyruvate kinase; Provisional
Probab=20.12 E-value=2.6e+02 Score=29.56 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=34.7
Q ss_pred CHHHHHHHHhCCCCEEEecCccccccCCCCCCCCccchHHHHHHHHHHHHHc--CCEEEEEcCCC
Q 013777 159 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDLHAA 221 (436)
Q Consensus 159 te~d~~~ia~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~--Gi~VilDlH~~ 221 (436)
+++.++.|.+.|+|.+||-++.- ++ +...+.++.+=+.+++. .+.+++||-+.
T Consensus 19 ~~e~l~~li~aGm~v~RlN~SHg---~~-------e~~~~~i~~vr~~~~~~~~~i~Il~Dl~Gp 73 (476)
T PRK06247 19 SEDMIRKLVEAGADVFRLNFSHG---DH-------DDHRELYKRIREVEDETGRPIGILADLQGP 73 (476)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---CH-------HHHHHHHHHHHHHHHHcCCCeeEEEeCCCC
Confidence 36889999999999999987531 11 12334444444444444 46788999764
No 365
>PRK14012 cysteine desulfurase; Provisional
Probab=20.07 E-value=1.8e+02 Score=29.41 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 013777 195 GSSKVLDNAFDWAEKYGVKVIVDLHAAPG 223 (436)
Q Consensus 195 ~~l~~ld~~v~~a~~~Gi~VilDlH~~pg 223 (436)
+...-++++.++|+++|+.||+|--...|
T Consensus 158 G~~~~~~~I~~la~~~g~~vivD~a~~~g 186 (404)
T PRK14012 158 GVIQDIAAIGEICRERGIIFHVDAAQSVG 186 (404)
T ss_pred cchhhHHHHHHHHHHcCCEEEEEcchhcC
Confidence 55666899999999999999999865443
No 366
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.04 E-value=9.3e+02 Score=24.50 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHhCC--CCEEEecCccccccCCCCCCCCc-cchHHHHHHHHHHHHH--cCCEEEEEcC
Q 013777 157 YITDEDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEK--YGVKVIVDLH 219 (436)
Q Consensus 157 ~ite~d~~~ia~~G--~N~VRipv~~~~~~~~~~~~~~~-~~~l~~ld~~v~~a~~--~Gi~VilDlH 219 (436)
.++++.++.|++.| +..+-||+- ...+..- .... ....+.+.++++.+++ .|+.+..|+-
T Consensus 232 ~~~~ell~~m~~~~~~~~~l~lglE--Sgs~~vL-k~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~I 296 (414)
T TIGR01579 232 DIDEELLEAIASEKRLCPHLHLSLQ--SGSDRVL-KRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDII 296 (414)
T ss_pred hCCHHHHHHHHhcCccCCCeEECCC--cCChHHH-HhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEE
Confidence 36888999999876 777777762 1211000 0000 1245778888999999 8988777754
Done!